RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16887
         (160 letters)



>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of
          Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 21 VSLRHPGFIRPVVLFGPVADLARDKLLKDFPDKFSAPHPR 60
          V+     + RP+++ GP  D A D LL +FPDKF +  P 
Sbjct: 1  VTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPH 40


>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 27.9 bits (61), Expect = 0.47
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 30 RPVVLFGPVA---DLARDKLLKDFPDKFSAPHPRRR 62
          + +VL G         ++ L+   PD+F+ P P   
Sbjct: 4  KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 39


>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 186

 Score = 26.8 bits (58), Expect = 0.93
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)

Query: 30 RPVVLFGPVA---DLARDKLLKDFPDKFSAPHPRRRNQ 64
          RP+V+ GP          KL  ++PD F          
Sbjct: 2  RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39


>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 190

 Score = 26.4 bits (57), Expect = 1.3
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 5/37 (13%)

Query: 30 RPVVLFGPVA---DLARDKLLKDFPDKF--SAPHPRR 61
          RPVVL GP          KL ++    F  S  H  R
Sbjct: 1  RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTR 37


>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 96

 Score = 25.2 bits (55), Expect = 1.8
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 50 FPDKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSYGFY 90
          FP+  + P        + R  +F   +  V+   L   GFY
Sbjct: 1  FPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFY 41


>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea
           lamprey (Petromyzon marinus), beta [TaxId: 7757]}
          Length = 259

 Score = 25.6 bits (55), Expect = 3.2
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 52  DKFSAPHPRRRNQEKFRWSSFFNSLTKVSATCLTSY--GFYVDLLFGSNRSDDLDSNPRV 109
           D ++   P +    +     ++N        C  +   G Y      +    D  ++  V
Sbjct: 185 DNWNPGDPTKHCSREDAGGWWYNR-------CHAANPNGRYYWGGIYTKEQADYGTDDGV 237

Query: 110 YTRPWKNGKPG-KSMDLKIRPK 130
               WK      + M +K+RPK
Sbjct: 238 VWMNWKGSWYSMRQMAMKLRPK 259


>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and
           beige-like anchor protein LRBA {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 304

 Score = 25.0 bits (54), Expect = 4.4
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 2   HWDDVVFGDSISKFPAYERVSLRHP----GFIRPVVLFGPVADLARDKLLKDF---PDK- 53
            W D++FG       A   +++ +     G +    +  PV   A +  ++ F   P + 
Sbjct: 237 QWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQL 296

Query: 54  FSAPHPRR 61
              PHP R
Sbjct: 297 LIEPHPPR 304


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 653,482
Number of extensions: 28845
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 11
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)