BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1689
         (998 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|158299261|ref|XP_554103.3| AGAP010198-PA [Anopheles gambiae str. PEST]
 gi|157014280|gb|EAL39294.3| AGAP010198-PA [Anopheles gambiae str. PEST]
          Length = 809

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/505 (73%), Positives = 441/505 (87%), Gaps = 3/505 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  WSLMC
Sbjct: 302 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMC 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD+WGE+F+ LY  YE EG+FIRQV A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 362 PHDCPGLSDTWGEEFEKLYTGYEKEGRFIRQVKAQDLWFAIIESQVETGVPYMLYKDACN 421

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDEVAVCNLASIALNM++   DKTY+F KLK+VAK
Sbjct: 422 RKSNQQNIGTIKCSNLCTEIVEYSSKDEVAVCNLASIALNMFVK-QDKTYDFAKLKEVAK 480

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNKIIDVN+YPV EA+ SNMRHRPIGIGVQG+AD FI MR P++  E++ LN+QI
Sbjct: 481 TVTRNLNKIIDVNYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYESEEAQKLNQQI 540

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+AARDGPY+TYEGSPVS+GILQY+MW   PTDLW+WA LKEKIAKH
Sbjct: 541 FETIYYGALEASCELAARDGPYETYEGSPVSKGILQYEMWNKEPTDLWNWAELKEKIAKH 600

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQVVNHHLL+DL  +GLW
Sbjct: 601 GIRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLQDLTNMGLW 660

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D +MK++++ NNGSIQ I  IPQ+++DLYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 661 DLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIH 720

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DKTK+ N   S  +R   E
Sbjct: 721 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKTKLQNGNESNVSRMSNE 780

Query: 571 IQ--ADQEQAMAAMICRRDNKEDCI 593
               A++ + MA M+C  +NK++C+
Sbjct: 781 NGSFAERNRRMAEMVCSLENKDECM 805



 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 193/231 (83%), Gaps = 2/231 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW   PTDLW+WA LKEKIAKHG+RNSLL+APMPTASTAQILGNNESFEPYTSN+Y
Sbjct: 575 LQYEMWNKEPTDLWNWAELKEKIAKHGIRNSLLLAPMPTASTAQILGNNESFEPYTSNVY 634

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLL+DL  +GLWD +MK++++ NNGSIQ I  IPQ+++DLYKTVWE
Sbjct: 635 NRRVLSGEFQVVNHHLLQDLTNMGLWDLDMKNEILSNNGSIQKIAAIPQEIRDLYKTVWE 694

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KT + MAADRGAFIDQSQS NI++AE NY K++S+HF+GWK+GLKTGMYYLRTKPA 
Sbjct: 695 ISVKTCIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAV 754

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQ--ADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+DKTK+ N   S  +R   E    A++ + MA M+C  +NK++C+
Sbjct: 755 NAIQFTVDKTKLQNGNESNVSRMSNENGSFAERNRRMAEMVCSLENKDECM 805



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  WSLMC
Sbjct: 302 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMC 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD+WGE+F+ LY  YE EG
Sbjct: 362 PHDCPGLSDTWGEEFEKLYTGYEKEG 387



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 77/92 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD FI MR P++  E++ LN+QIFETIYYGALEASCE+AARDGPY+TYEGSPVS
Sbjct: 512 IGVQGMADAFILMRYPYESEEAQKLNQQIFETIYYGALEASCELAARDGPYETYEGSPVS 571

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQY+MW   PTDLW+WA LK     +G++
Sbjct: 572 KGILQYEMWNKEPTDLWNWAELKEKIAKHGIR 603



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 51/63 (80%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +Q  EV+ +LY M N+   T++PMISD HY++IM NADRLNSAIIYDRDF YN+F
Sbjct: 96  HKETKKQFSEVMHDLYMMENEFLKTKSPMISDFHYKVIMDNADRLNSAIIYDRDFGYNYF 155

Query: 768 GFK 770
           GFK
Sbjct: 156 GFK 158



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQ+ETG PYMLYKDACNRKSNQQN+  I+
Sbjct: 398 LWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIK 433


>gi|157126851|ref|XP_001660977.1| ribonucleoside-diphosphate reductase large chain [Aedes aegypti]
 gi|18087345|gb|AAL58843.1|AF411296_1 ribonucleotide reductase 1 [Aedes aegypti]
 gi|108873131|gb|EAT37356.1| AAEL010644-PA [Aedes aegypti]
          Length = 844

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/542 (68%), Positives = 444/542 (81%), Gaps = 40/542 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGD+F+FL+LKKNTG E+ RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 300 RPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDWCLMC 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD+WGE+F+ LY  YEAEG++IR+V A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 360 PHECPGLSDTWGEEFEKLYTSYEAEGRYIRKVKAQDLWFAIIESQVETGVPYMLYKDACN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDE+AVCNLASIALNM++ P DKTY+F KLK+VAK
Sbjct: 420 RKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKP-DKTYDFQKLKEVAK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I TKNLNKIID+NFYPV EA+ SNMRHRPIGIGVQG+AD FI MR P+D  E++ LN+QI
Sbjct: 479 IATKNLNKIIDINFYPVPEAKRSNMRHRPIGIGVQGMADAFILMRYPYDSEEAQKLNQQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++G Y+TY G PVS+G+LQYDMW   PTD+WDWAALKEKIAKH
Sbjct: 539 FETIYYGALEASCELAEKEGTYETYPGCPVSKGVLQYDMWNKEPTDMWDWAALKEKIAKH 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQ+VNHHLL+DL EL LW
Sbjct: 599 GVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQIVNHHLLKDLTELDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I NNGSIQ+IE IPQ ++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 659 DDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWEISVKSCIKMAADRGAFIDQSQSFNIH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-------------- 556
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DKT++              
Sbjct: 719 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKTRLNQSNRINNSDTVNG 778

Query: 557 --------------ANAMASKDA--------RSQEEI---QADQEQAMAAMICRRDNKED 591
                          N  A+  A         SQ+++    A++ + MA M+C  +NKED
Sbjct: 779 SPSKMNGATSTPSKMNGTATSSASPVKASSDNSQQQLNGSHAERNRRMAEMVCSLENKED 838

Query: 592 CI 593
           C+
Sbjct: 839 CM 840



 Score =  342 bits (877), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 164/268 (61%), Positives = 202/268 (75%), Gaps = 39/268 (14%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PTD+WDWAALKEKIAKHGVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y
Sbjct: 573 LQYDMWNKEPTDMWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VNHHLL+DL EL LWDD+MK+++I NNGSIQ+IE IPQ ++DLYKTVWE
Sbjct: 633 NRRVLSGEFQIVNHHLLKDLTELDLWDDDMKNRIIANNGSIQNIEEIPQHIRDLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+GWK+GLKTGMYYLRTKPA 
Sbjct: 693 ISVKSCIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAV 752

Query: 949 NAIQFTIDKTKM--ANAMASKDT----------------------------------RSQ 972
           NAIQFT+DKT++  +N + + DT                                   SQ
Sbjct: 753 NAIQFTVDKTRLNQSNRINNSDTVNGSPSKMNGATSTPSKMNGTATSSASPVKASSDNSQ 812

Query: 973 EEI---QADQEQAMAAMICRRDNKEDCL 997
           +++    A++ + MA M+C  +NKEDC+
Sbjct: 813 QQLNGSHAERNRRMAEMVCSLENKEDCM 840



 Score =  152 bits (384), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGD+F+FL+LKKNTG E+ RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 300 RPGAFAIYLEPWHGDVFEFLDLKKNTGAEDVRARDMFYALWIPDLFMKRVEANEDWCLMC 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD+WGE+F+ LY  YEAEG
Sbjct: 360 PHECPGLSDTWGEEFEKLYTSYEAEG 385



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD FI MR P+D  E++ LN+QIFETIYYGALEASCE+A ++G Y+TY G PVS
Sbjct: 510 IGVQGMADAFILMRYPYDSEEAQKLNQQIFETIYYGALEASCELAEKEGTYETYPGCPVS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMW   PTD+WDWAALK     +G++
Sbjct: 570 KGVLQYDMWNKEPTDMWDWAALKEKIAKHGVR 601



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 49/63 (77%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   +V+ +LY M N+    RTPMIS+ HY++IM +ADRLNSAIIYDRDF YN+F
Sbjct: 94  HKETKKHFSDVMHDLYMMENEHLKKRTPMISEFHYKVIMDHADRLNSAIIYDRDFGYNYF 153

Query: 768 GFK 770
           GFK
Sbjct: 154 GFK 156



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+    A  + +  V    LWFAI++SQ+ETG PYMLYKDACNRKSNQQN+
Sbjct: 368 DTWGEEFEKLYTSYEAEGRYIRKVKAQDLWFAIIESQVETGVPYMLYKDACNRKSNQQNI 427

Query: 717 EVIE 720
             I+
Sbjct: 428 GTIK 431


>gi|397531933|gb|AFO54476.1| ribonucleotide reductase large subunit R1i [Carassius carassius]
          Length = 793

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 428/503 (85%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWCLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F++LY KYE EGK  R V A++LW AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDECWGEEFENLYTKYEKEGKAKRVVKAQQLWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P ++T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVTP-ERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVQEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPY+TY GSPVS+GILQYDMW  TPTDLWDW ALKEKIAKH
Sbjct: 532 FETIYYAALESSCELAAEFGPYETYAGSPVSKGILQYDMWDKTPTDLWDWEALKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQLIAQNGSIQGIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+      K A ++EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLKE--TQKSASNEEE 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           I   +E  MAAM+C  +N+++C+
Sbjct: 770 I---KELNMAAMVCSLENRDECL 789



 Score =  343 bits (879), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 190/229 (82%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALKEKIAKHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWDKTPTDLWDWEALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+QLI  NGSIQ I  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQLIAQNGSIQGIPTIPDDLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+      K   ++EEI   +E  MAAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKE--TQKSASNEEEI---KELNMAAMVCSLENRDECL 789



 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWCLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL + WGE+F++LY KYE EG
Sbjct: 353 PNDCPGLDECWGEEFENLYTKYEKEG 378



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALE+SCE+AA  GPY+TY GSPVS
Sbjct: 503 IGVQGLADAFILMRFPFESAEAQLLNTQIFETIYYAALESSCELAAEFGPYETYAGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPTDLWDW ALK     +G++
Sbjct: 563 KGILQYDMWDKTPTDLWDWEALKEKIAKHGVR 594



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYSGVTTVEL-DTLAAEISATLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   E +E+LYN VN      +PM+S +  +I++ N DRLNSAII+DRDF+YNFFGFK
Sbjct: 90  TKKVFSEAMEDLYNYVNPLNDRHSPMVSKETLDIVLANKDRLNSAIIFDRDFSYNFFGFK 149



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V   +LW AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 379 KAKRVVKAQQLWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|397531935|gb|AFO54477.1| ribonucleotide reductase large subunit R1ii [Carassius carassius]
          Length = 793

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 429/503 (85%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++A WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNADWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE+F+ LY KYE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSDCPGLDECWGEEFEKLYMKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY+ P ++T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-ERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIIDVN+YPV EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDVNYYPVREAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPY+TY GSPVS+GILQYDMW  TPTDLWDWAALKEKI KH
Sbjct: 532 FETIYYAALESSCELAAECGPYETYAGSPVSKGILQYDMWEKTPTDLWDWAALKEKITKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQLIAQNGSIQAIPTIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT+DK K+     ++++ S EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLDKEKLKE---TQESTSNEE 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 769 --ETKERNKAAMVCSLENRDECL 789



 Score =  343 bits (879), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 190/229 (82%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWAALKEKI KHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWEKTPTDLWDWAALKEKITKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+QLI  NGSIQ I  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQLIAQNGSIQAIPTIPDDLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+DK K+     S  T ++EE    +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLDKEKLKETQES--TSNEEET---KERNKAAMVCSLENRDECL 789



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++A WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNADWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WGE+F+ LY KYE EG
Sbjct: 353 PSDCPGLDECWGEEFEKLYMKYEQEG 378



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALE+SCE+AA  GPY+TY GSPVS
Sbjct: 503 IGVQGLADAFILMRFPFESAEAQLLNTQIFETIYYAALESSCELAAECGPYETYAGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPTDLWDWAALK     +G++
Sbjct: 563 KGILQYDMWEKTPTDLWDWAALKEKITKHGVR 594



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYSGVTTVEL-DTLAAEITATLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+LYN VN   G  +PMIS +  +I++ N DRLNSAII+DRDF+YNFFGFK
Sbjct: 90  TKKVFSEVMEDLYNYVNPLNGHHSPMISKETLDIVLANKDRLNSAIIFDRDFSYNFFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|410915398|ref|XP_003971174.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Takifugu rubripes]
          Length = 792

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 429/503 (85%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F FLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAVYLEPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSECPGLIDCWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTSKDEVAVCNLASIALNMY+ P  +TY+F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-QRTYDFNKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ +NLNKIID+N+YPV EAR SNMRHRPIGIGVQGLAD FI MR P++  E++LLN QI
Sbjct: 472 IIVRNLNKIIDINYYPVPEARRSNMRHRPIGIGVQGLADAFILMRHPYESPEAQLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  GPY+TY GSPVS+G+LQYDMWG TPTDLWDW ALKEKIAKH
Sbjct: 532 FETIYYAALEASCELAAEFGPYETYAGSPVSKGVLQYDMWGKTPTDLWDWNALKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+QLI +NGSIQDI+ IP  LK LYKTVWEI QKTVL MAADRGA+IDQSQSLNI+
Sbjct: 652 SDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE  Y K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT+++ K+  A   + A+S+EE
Sbjct: 712 IAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNREKLKEA---QSAKSKEE 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+ MAAM+C   NK++C+
Sbjct: 769 A---KERNMAAMVCSLANKDECM 788



 Score =  347 bits (889), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/229 (72%), Positives = 193/229 (84%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDW ALKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWGKTPTDLWDWNALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW D MK+QLI +NGSIQDI+ IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWSDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGA+IDQSQSLNI++AE  Y K++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 686 ISQKTVLKMAADRGAYIDQSQSLNIHIAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+++ K+  A ++K   S+EE    +E+ MAAM+C   NK++C+
Sbjct: 746 NPIQFTLNREKLKEAQSAK---SKEEA---KERNMAAMVCSLANKDECM 788



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F FLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAVYLEPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F++LY +YE EG
Sbjct: 353 PSECPGLIDCWGEEFEELYTRYEKEG 378



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR P++  E++LLN QIFETIYY ALEASCE+AA  GPY+TY GSPVS
Sbjct: 503 IGVQGLADAFILMRHPYESPEAQLLNIQIFETIYYAALEASCELAAEFGPYETYAGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMWG TPTDLWDW ALK     +G++
Sbjct: 563 KGVLQYDMWGKTPTDLWDWNALKEKIAKHGVR 594



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PMIS +  +I+++N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNKQHSPMISKETLDIVLENKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|170038940|ref|XP_001847305.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
 gi|167862546|gb|EDS25929.1| ribonucleoside-diphosphate reductase large subunit [Culex
           quinquefasciatus]
          Length = 838

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/543 (67%), Positives = 438/543 (80%), Gaps = 41/543 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL ++WGE+F+ LY  YE EG++IR+V A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 353 PHDCPGLPETWGEEFEKLYTTYENEGRYIRKVKAQDLWFAIIESQVETGVPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDE+AVCNLASIA+NM++ P DK+Y+F KLK+V+K
Sbjct: 413 RKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIAVNMFVKP-DKSYDFQKLKEVSK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YPV EA+ SNMRHRPIGIGVQG+AD FI MR P++  E++ LN+QI
Sbjct: 472 IVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRFPYESEEAQKLNQQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCEIA +DG Y+TY+G PVS+GILQYDMW   P+DLWDWA LKEKIAKH
Sbjct: 532 FETIYYGALEASCEIAEKDGTYETYDGCPVSKGILQYDMWNKAPSDLWDWAPLKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQVVNHHLL+DL EL LW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I +NGSIQ I+ IP+ +++LYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 652 DDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWEISVKTCIKMAADRGAFIDQSQSFNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN------------ 558
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DK K+              
Sbjct: 712 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKVKLGQTQSAQNGTTSPS 771

Query: 559 --------------------AMASKDA--------RSQEEIQADQEQAMAAMICRRDNKE 590
                               AMA   A         S     A++ + MA M+C  +NKE
Sbjct: 772 KSMLMNGSSTPRKMNGESSMAMADTSAIAAGTAGETSMNGSYAERNRRMAEMVCSLENKE 831

Query: 591 DCI 593
           DC+
Sbjct: 832 DCM 834



 Score =  332 bits (850), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 161/269 (59%), Positives = 195/269 (72%), Gaps = 40/269 (14%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   P+DLWDWA LKEKIAKHGVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y
Sbjct: 566 LQYDMWNKAPSDLWDWAPLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLL+DL EL LWDD+MK+++I +NGSIQ I+ IP+ +++LYKTVWE
Sbjct: 626 NRRVLSGEFQVVNHHLLKDLTELELWDDDMKNKIIASNGSIQHIDEIPKHIRELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KT + MAADRGAFIDQSQS NI++AE NY K++S+HF+GWK+GLKTGMYYLRTKPA 
Sbjct: 686 ISVKTCIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAV 745

Query: 949 NAIQFTIDKTKMA------------------------------NAMASKDTR-------- 970
           NAIQFT+DK K+                               ++MA  DT         
Sbjct: 746 NAIQFTVDKVKLGQTQSAQNGTTSPSKSMLMNGSSTPRKMNGESSMAMADTSAIAAGTAG 805

Query: 971 --SQEEIQADQEQAMAAMICRRDNKEDCL 997
             S     A++ + MA M+C  +NKEDC+
Sbjct: 806 ETSMNGSYAERNRRMAEMVCSLENKEDCM 834



 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGDIF+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  W LMC
Sbjct: 293 RPGAFAIYLEPWHGDIFEFLDLKKNTGKEEVRARDMFYALWIPDLFMKRVEANEDWCLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL ++WGE+F+ LY  YE EG
Sbjct: 353 PHDCPGLPETWGEEFEKLYTTYENEG 378



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD FI MR P++  E++ LN+QIFETIYYGALEASCEIA +DG Y+TY+G PVS
Sbjct: 503 IGVQGMADAFILMRFPYESEEAQKLNQQIFETIYYGALEASCEIAEKDGTYETYDGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   P+DLWDWA LK     +G++
Sbjct: 563 KGILQYDMWNKAPSDLWDWAPLKEKIAKHGVR 594



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/63 (60%), Positives = 52/63 (82%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   +V+ +LYNM N+   T++PMISD+HY+IIM NADRLNSAIIYDRDF YN+F
Sbjct: 87  HKETKKHFSDVMADLYNMENEFLKTKSPMISDEHYKIIMDNADRLNSAIIYDRDFGYNYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQ+ETG PYMLYKDACNRKSNQQN+  I+
Sbjct: 389 LWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIK 424


>gi|321471172|gb|EFX82145.1| hypothetical protein DAPPUDRAFT_302612 [Daphnia pulex]
          Length = 798

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/503 (71%), Positives = 430/503 (85%), Gaps = 1/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FMRRVESD  WSLMC
Sbjct: 293 RPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D+WGE+F+ LY KYE  G + R+V A++LWFA+++SQIETGTPY+LYKDACN
Sbjct: 353 PHECPGLADTWGEEFEALYTKYEESGMYRRKVKAQQLWFAVIESQIETGTPYILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S +EVAVCNL SIALNM++ P DKT++  KLK+V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYSSPEEVAVCNLGSIALNMFVKP-DKTFDIPKLKEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKII++N+YPV EA+ SN RHRPIGIGVQGLAD FI MR PFD  E++LLNK I
Sbjct: 472 VLTRNLNKIIEINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRYPFDSEEAQLLNKHI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A + G Y++Y G PVS+GILQYDMWGVTPTDLWDWAALK+KI +H
Sbjct: 532 FETIYYGALEASCELAEQLGTYESYPGCPVSKGILQYDMWGVTPTDLWDWAALKKKINEH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES E YTSNIY RRVLSGEFQVVNHHLLRDL E GLW
Sbjct: 592 GLRNSLLLAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFQVVNHHLLRDLTEGGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++++K+ +I NNGSIQ+I+GIP  LK LYKTVWEIPQ+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWEIPQRIVIKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+ WKLGLKTGMYYLRTKPAA+AIQFT+DK+K+       ++     
Sbjct: 712 IAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAASAIQFTVDKSKLKKMNGVDNSAGATN 771

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
              ++++   AM+C   N++DC+
Sbjct: 772 GNDEEKRNREAMVCSLQNRDDCL 794



 Score =  342 bits (877), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 191/229 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDWAALK+KI +HG+RNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWGVTPTDLWDWAALKKKINEHGLRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVNHHLLRDL E GLW++++K+ +I NNGSIQ+I+GIP  LK LYKTVWE
Sbjct: 626 VRRVLSGEFQVVNHHLLRDLTEGGLWNEDVKNGIIANNGSIQNIDGIPDDLKALYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ V+ MAADRGAFIDQSQSLNI++AE NY K++SMHF+ WKLGLKTGMYYLRTKPAA
Sbjct: 686 IPQRIVIKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYSWKLGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AIQFT+DK+K+       ++        ++++   AM+C   N++DCL
Sbjct: 746 SAIQFTVDKSKLKKMNGVDNSAGATNGNDEEKRNREAMVCSLQNRDDCL 794



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/87 (77%), Positives = 75/87 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FMRRVESD  WSLMC
Sbjct: 293 RPGAFAIYLEPWHSDVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVESDGDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ C GL+D+WGE+F+ LY KYE  G+
Sbjct: 353 PHECPGLADTWGEEFEALYTKYEESGM 379



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PFD  E++LLNK IFETIYYGALEASCE+A + G Y++Y G PVS
Sbjct: 503 IGVQGLADAFILMRYPFDSEEAQLLNKHIFETIYYGALEASCELAEQLGTYESYPGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWGVTPTDLWDWAALK     +GL+
Sbjct: 563 KGILQYDMWGVTPTDLWDWAALKKKINEHGLR 594



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI++LYNM NK T   TPMISD H+ II K++D+LNSAIIYDRDFN+N+FGFK
Sbjct: 96  EVIDDLYNMKNKITKKPTPMISDFHHGIITKHSDKLNSAIIYDRDFNFNYFGFK 149



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 36/41 (87%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWFA+++SQIETGTPY+LYKDACNRKSNQQNL  I+
Sbjct: 384 VKAQQLWFAVIESQIETGTPYILYKDACNRKSNQQNLGTIK 424


>gi|195578133|ref|XP_002078920.1| GD22272 [Drosophila simulans]
 gi|194190929|gb|EDX04505.1| GD22272 [Drosophila simulans]
          Length = 812

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/506 (70%), Positives = 433/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHEVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I KH
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808



 Score =  338 bits (867), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 193/232 (83%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDW  LKE I KHGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ---EEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K + A +M  ++  ++   ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACM 808



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLHEVWGDEFEKLYEKYEQEG 389



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE+A  +GPY+TYEGSPVS
Sbjct: 514 IGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDW  LK     +G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIKKHGVR 605



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA ++ A +      +AIL ++I     +   K A +        +V E+
Sbjct: 61  GVTTQELDNLAA-EIAAGLTCNHPDYAILAARIAVSNLHKETKKAFS--------DVFED 111

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 112 LYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAI+++Q+ETG PYML+KDACNRKSNQQN+  I+
Sbjct: 395 VKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIK 435


>gi|194859786|ref|XP_001969450.1| GG23946 [Drosophila erecta]
 gi|190661317|gb|EDV58509.1| GG23946 [Drosophila erecta]
          Length = 812

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/506 (70%), Positives = 431/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY+KYE EG+  R V A+ LW+AI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLQDVWGDEFEKLYEKYEQEGRANRTVKAQSLWYAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTRNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I KH
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQ+++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE- 569
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K K A  +  ++  S E 
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKKGAEGINGQNGTSDES 782

Query: 570 --EIQADQEQAMAAMICRRDNKEDCI 593
             + + D+E+ MA M+C  +NK+ C+
Sbjct: 783 SKQFEEDRERKMADMVCSLENKDACM 808



 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 191/232 (82%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDW  LKE I KHGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IPQ+++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQRVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQE---EIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K K A  +  ++  S E   + + D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVNKKKGAEGINGQNGTSDESSKQFEEDRERKMADMVCSLENKDACM 808



 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLQDVWGDEFEKLYEKYEQEG 389



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE+A  +GPY+TYEGSPVS
Sbjct: 514 IGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDW  LK     +G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIKKHGVR 605



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 66/112 (58%), Gaps = 15/112 (13%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLW---FAILDSQIETGTPYMLYKDACNRKSNQQNLEV 718
           GVT  +L + AA     +  GL  +   +AIL ++I     +   K A +        +V
Sbjct: 61  GVTTQELDNLAA----EIAAGLTCYHPDYAILAARIAVSNLHKETKKAFS--------DV 108

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            E+LYN VNKET  +  ++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 109 FEDLYNHVNKETNQKVSLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LW+AI+++Q+ETG PYML+KDACNRKSNQQN+  I+
Sbjct: 395 VKAQSLWYAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIK 435


>gi|194761754|ref|XP_001963091.1| GF14111 [Drosophila ananassae]
 gi|190616788|gb|EDV32312.1| GF14111 [Drosophila ananassae]
          Length = 812

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/506 (70%), Positives = 429/506 (84%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY KYE EG+  R V A+ LWFAI++SQ+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHDVWGDEFEKLYVKYEQEGRANRTVKAQSLWFAIIESQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V +NLNKIID+NFYP+ EA+ SNMRHRPIGIGVQGLAD  I MR P++  E+ LLN+QI
Sbjct: 483 TVARNLNKIIDINFYPLPEAKKSNMRHRPIGIGVQGLADALILMRYPYESEEASLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+A +DG Y+TYEGSPVS+GILQYDMW  TPT LWDW +LKE I +H
Sbjct: 543 FETIYFGALEASCELAQKDGTYETYEGSPVSKGILQYDMWDKTPTGLWDWKSLKESIKQH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT+DK   A  +  ++   +E 
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVDKKMSALKINGQNGVKEES 782

Query: 571 IQ---ADQEQAMAAMICRRDNKEDCI 593
            Q   +D+E+ MA M+C  +NK+ C+
Sbjct: 783 AQDYESDRERKMADMVCSLENKDACM 808



 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 157/232 (67%), Positives = 190/232 (81%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPT LWDW +LKE I +HGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKTPTGLWDWKSLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIESIPQKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMA---NAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+DK   A   N        S ++ ++D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVDKKMSALKINGQNGVKEESAQDYESDRERKMADMVCSLENKDACM 808



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WG++F+ LY KYE EG
Sbjct: 364 PHKCPGLHDVWGDEFEKLYVKYEQEG 389



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD  I MR P++  E+ LLN+QIFETIY+GALEASCE+A +DG Y+TYEGSPVS
Sbjct: 514 IGVQGLADALILMRYPYESEEASLLNQQIFETIYFGALEASCELAQKDGTYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPT LWDW +LK     +G++
Sbjct: 574 KGILQYDMWDKTPTGLWDWKSLKESIKQHGVR 605



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V E LY  VNKET  R P++S+ HY ++ KNADRLNS+IIYDRDF YN+FGFK
Sbjct: 107 DVFEALYTHVNKETNLRAPLVSEFHYNVVKKNADRLNSSIIYDRDFGYNYFGFK 160



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAI++SQ+ETG PYML+KDACNRKSNQQN+  I+
Sbjct: 395 VKAQSLWFAIIESQVETGNPYMLFKDACNRKSNQQNVGTIK 435


>gi|242014390|ref|XP_002427874.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
 gi|212512343|gb|EEB15136.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Pediculus humanus corporis]
          Length = 795

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/503 (71%), Positives = 427/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLFY LWIPD FM RVE + +W LMC
Sbjct: 296 RPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQEWCLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P TC GLSD WGE+F+ LY  YE +G ++++V A+ LW+AI++SQ+ETGTPYMLYKDACN
Sbjct: 356 PKTCPGLSDCWGEEFNKLYLSYEEKGLYVKKVKAQSLWYAIIESQVETGTPYMLYKDACN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S +E+AVCNLASIA+NM++ P DKTYNF KLKDV K
Sbjct: 416 RKSNQQNLGTIKCSNLCTEIVEYSSPEEIAVCNLASIAVNMFVKP-DKTYNFEKLKDVTK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+TKNLNK+ID+ +YPV EA+ SN+RHRPIGIG+QGLAD FI MRLPFD  E++ LN QI
Sbjct: 475 IITKNLNKVIDITYYPVPEAKLSNLRHRPIGIGIQGLADAFILMRLPFDSPEAQKLNIQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEAS E+AA  GPY+TYEGSP S+GILQYDMWGVTPT+LWDW ALK KI K 
Sbjct: 535 FETIYYGALEASSELAAIHGPYETYEGSPASKGILQYDMWGVTPTNLWDWDALKNKIKKW 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNESFEPYT+NIY+RRVLSGEFQVVN HLL+DL E+GLW
Sbjct: 595 GIRNSLLIAPMPTASTAQILGNNESFEPYTTNIYTRRVLSGEFQVVNQHLLKDLTEIGLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+ +I N GSIQ+I+ IP++LK LYKTVWEI QK +L MAADRGAFIDQSQSLNI+
Sbjct: 655 NDEMKNTIIANGGSIQNIDSIPKELKALYKTVWEISQKVILKMAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A+ NY K++SMHF+ WKLGLKTGMYYLRTKPAA  IQFT+DKTK+ NA   + +  +++
Sbjct: 715 IAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAAQPIQFTVDKTKVNNANVKEVSTEKDK 774

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
                   M ++ C   NK+DC+
Sbjct: 775 FN------MESISCSLQNKDDCL 791



 Score =  335 bits (860), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 188/229 (82%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPT+LWDW ALK KI K G+RNSLLIAPMPTASTAQILGNNESFEPYT+NIY
Sbjct: 569 LQYDMWGVTPTNLWDWDALKNKIKKWGIRNSLLIAPMPTASTAQILGNNESFEPYTTNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLL+DL E+GLW+D MK+ +I N GSIQ+I+ IP++LK LYKTVWE
Sbjct: 629 TRRVLSGEFQVVNQHLLKDLTEIGLWNDEMKNTIIANGGSIQNIDSIPKELKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L MAADRGAFIDQSQSLNI++A+ NY K++SMHF+ WKLGLKTGMYYLRTKPAA
Sbjct: 689 ISQKVILKMAADRGAFIDQSQSLNIHIAQPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
             IQFT+DKTK+ NA   + +  +++        M ++ C   NK+DCL
Sbjct: 749 QPIQFTVDKTKVNNANVKEVSTEKDKFN------MESISCSLQNKDDCL 791



 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 71/87 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLFY LWIPD FM RVE + +W LMC
Sbjct: 296 RPGAFAIYLEPWHADIFEFLDLKKNTGKEETRARDLFYALWIPDLFMERVEQNQEWCLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P  C GLSD WGE+F+ LY  YE +GL
Sbjct: 356 PKTCPGLSDCWGEEFNKLYLSYEEKGL 382



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 72/83 (86%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD FI MRLPFD  E++ LN QIFETIYYGALEAS E+AA  GPY+TYEGSP S
Sbjct: 506 IGIQGLADAFILMRLPFDSPEAQKLNIQIFETIYYGALEASSELAAIHGPYETYEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQYDMWGVTPT+LWDW ALK
Sbjct: 566 KGILQYDMWGVTPTNLWDWDALK 588



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L D  A +V A +      +AIL ++I             ++++     +V+ +
Sbjct: 53  GVTTAEL-DSLAAEVSASMTTQHPDYAILAARIAVSN--------LHKETKVSFSDVMTD 103

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYNM N      TPM+SD HY+II+K+AD LN+AIIY+RD+NYN+FGFK
Sbjct: 104 LYNMKNSFNQQPTPMLSDYHYDIIIKHADELNAAIIYERDYNYNYFGFK 152



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 34/36 (94%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW+AI++SQ+ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 392 LWYAIIESQVETGTPYMLYKDACNRKSNQQNLGTIK 427


>gi|195473603|ref|XP_002089082.1| GE26085 [Drosophila yakuba]
 gi|194175183|gb|EDW88794.1| GE26085 [Drosophila yakuba]
          Length = 812

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/506 (70%), Positives = 433/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLQDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EA+ SN+RHRP+GIGVQG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEAKKSNLRHRPVGIGVQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I +H
Sbjct: 543 FETIYYGALEASCELAQAEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKQH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A ++  ++  S+  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSINGQNGASEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKFEEDRERKMADMVCSLENKDACM 808



 Score =  337 bits (865), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/232 (66%), Positives = 193/232 (83%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDW  LKE I +HGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIKQHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIEAIPQKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ---EEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K + A ++  ++  S+   ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVNKKQGAVSINGQNGASEGSPQKFEEDRERKMADMVCSLENKDACM 808



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLQDVWGDEFEKLYEKYEQEG 389



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE+A  +GPY+TYEGSPVS
Sbjct: 514 IGVQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQAEGPYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDW  LK     +G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIKQHGVR 605



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V E+LY  VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 107 DVFEDLYEHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAI+++Q+ETG PYML+KDACNRKSNQQN+  I+
Sbjct: 395 VKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIK 435


>gi|312385901|gb|EFR30291.1| hypothetical protein AND_00204 [Anopheles darlingi]
          Length = 775

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/469 (75%), Positives = 417/469 (88%), Gaps = 1/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGD+F+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  WSLMC
Sbjct: 278 RPGAFAIYLEPWHGDVFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLS++WGE+F+ LY  YE EG+F RQV A+ LWFAI++SQ+ETG PYMLYKDACN
Sbjct: 338 PHDCPGLSETWGEEFEKLYTGYEREGRFTRQVKAQDLWFAIIESQVETGVPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+SKDE+AVCNLASIALNM++ P D+TY+F KLK+VAK
Sbjct: 398 RKSNQQNIGTIKCSNLCTEIVEYSSKDEIAVCNLASIALNMFVKP-DRTYDFAKLKEVAK 456

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNKIID+N+YPV EA+ SNMRHRPIGIGVQG+AD FI MR P++  E++LLN+Q+
Sbjct: 457 TVTKNLNKIIDINYYPVPEAKRSNMRHRPIGIGVQGMADAFILMRHPYESEEAQLLNQQM 516

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+AA+DGPY++Y+GSPVS+GILQYDMW   PT+LWDWA LK  I  H
Sbjct: 517 FETIYFGALEASCELAAQDGPYESYDGSPVSKGILQYDMWEKKPTELWDWAELKRNIVTH 576

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y+RRVLSGEFQVVNHHLL+DL EL LW
Sbjct: 577 GVRNSLLLAPMPTASTAQILGNNESFEPYTSNVYNRRVLSGEFQVVNHHLLKDLTELELW 636

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK++++  NGSIQ IE IPQ +++LYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 637 DDEMKNKILAQNGSIQKIEEIPQHIRNLYKTVWEISVKTCIKMAADRGAFIDQSQSFNIH 696

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +AE NY K++S+HF+GWK+GLKTGMYYLRTKPA NAIQFT+DK+K+ N 
Sbjct: 697 VAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAVNAIQFTVDKSKLQNG 745



 Score =  319 bits (817), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 168/195 (86%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDWA LK  I  HGVRNSLL+APMPTASTAQILGNNESFEPYTSN+Y
Sbjct: 551 LQYDMWEKKPTELWDWAELKRNIVTHGVRNSLLLAPMPTASTAQILGNNESFEPYTSNVY 610

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLL+DL EL LWDD MK++++  NGSIQ IE IPQ +++LYKTVWE
Sbjct: 611 NRRVLSGEFQVVNHHLLKDLTELELWDDEMKNKILAQNGSIQKIEEIPQHIRNLYKTVWE 670

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KT + MAADRGAFIDQSQS NI++AE NY K++S+HF+GWK+GLKTGMYYLRTKPA 
Sbjct: 671 ISVKTCIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYGWKMGLKTGMYYLRTKPAV 730

Query: 949 NAIQFTIDKTKMANA 963
           NAIQFT+DK+K+ N 
Sbjct: 731 NAIQFTVDKSKLQNG 745



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGD+F+FL+LKKNTGKEE RARD+FY LWIPD FM+RVE++  WSLMC
Sbjct: 278 RPGAFAIYLEPWHGDVFEFLDLKKNTGKEEVRARDMFYALWIPDLFMQRVEANEMWSLMC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLS++WGE+F+ LY  YE EG
Sbjct: 338 PHDCPGLSETWGEEFEKLYTGYEREG 363



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 79/92 (85%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD FI MR P++  E++LLN+Q+FETIY+GALEASCE+AA+DGPY++Y+GSPVS
Sbjct: 488 IGVQGMADAFILMRHPYESEEAQLLNQQMFETIYFGALEASCELAAQDGPYESYDGSPVS 547

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDWA LK   + +G++
Sbjct: 548 KGILQYDMWEKKPTELWDWAELKRNIVTHGVR 579



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 50/59 (84%), Gaps = 1/59 (1%)

Query: 713 QQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           Q++LE V+ +LY M N+   T++PMIS+ HY++IM+NADRLNSAIIYDRDF YN+FGFK
Sbjct: 76  QESLEKVMHDLYMMENEFLKTKSPMISNTHYKLIMENADRLNSAIIYDRDFGYNYFGFK 134



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQ+ETG PYMLYKDACNRKSNQQN+  I+
Sbjct: 374 LWFAIIESQVETGVPYMLYKDACNRKSNQQNIGTIK 409


>gi|156408425|ref|XP_001641857.1| predicted protein [Nematostella vectensis]
 gi|156228997|gb|EDO49794.1| predicted protein [Nematostella vectensis]
          Length = 810

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/511 (71%), Positives = 432/511 (84%), Gaps = 7/511 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DI +FL+LKKNTGKEE RARDLFY LWIPD FM+RVE+D  WSLMC
Sbjct: 303 RPGAFAIYLEPWHADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKRVEADGMWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GEKF+ LY+KYE++GK++RQ+ A+KLWFAIL+SQ ETGTPYMLYKDACN
Sbjct: 363 PNQCPGLQDCYGEKFEKLYEKYESQGKYMRQIKAQKLWFAILESQTETGTPYMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT---YNFTKLKD 267
            KSNQ+NLGTIKCSNLCTEIVEY++ DEVAVCNLASIALN ++N  DK+   +NF KL +
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNRFVN-VDKSPPEFNFQKLFE 481

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V ++VTKNLNKIIDVN+YPV EAR SN RHRPIGIGVQGLAD FI MR PF+  +++ LN
Sbjct: 482 VTQVVTKNLNKIIDVNYYPVPEARKSNFRHRPIGIGVQGLADAFILMRYPFESQKAQELN 541

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
           K IFETIYYGA+ ASC++AA +GPY+TYEGSP SQG+LQYD+W VTP++LWDW ALK+K+
Sbjct: 542 KLIFETIYYGAVTASCDLAATNGPYETYEGSPASQGLLQYDLWNVTPSNLWDWEALKKKV 601

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIAPMPTASTAQILGNNES EPYTSNIYSRRVLSGEFQ+VNHHLL+DL E+
Sbjct: 602 KEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQIVNHHLLKDLTEM 661

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+D MK+QLI NNGSIQDI+ IP  LK LYKTVWEI Q+ ++DMAADRGAFIDQSQS 
Sbjct: 662 GLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTVWEIKQRVLIDMAADRGAFIDQSQSF 721

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA-R 566
           N+++A+  ++K++SMHF+GWK GLKTGMYYLR++PA NAIQFT+D+T +A   AS  +  
Sbjct: 722 NVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRPAVNAIQFTVDQTALAKKKASDSSPT 781

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
           S EE     E A AA  CRRDN + C+   G
Sbjct: 782 SNEEKPKKDEDAAAA--CRRDNPDGCLMCSG 810



 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 191/230 (83%), Gaps = 3/230 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W VTP++LWDW ALK+K+ +HG+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 579 LQYDLWNVTPSNLWDWEALKKKVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 638

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VNHHLL+DL E+GLW+D MK+QLI NNGSIQDI+ IP  LK LYKTVWE
Sbjct: 639 SRRVLSGEFQIVNHHLLKDLTEMGLWNDGMKNQLIANNGSIQDIKEIPADLKALYKTVWE 698

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQS N+++A+  ++K++SMHF+GWK GLKTGMYYLR++PA 
Sbjct: 699 IKQRVLIDMAADRGAFIDQSQSFNVFIAQPTFSKLTSMHFYGWKKGLKTGMYYLRSRPAV 758

Query: 949 NAIQFTIDKTKMANAMASKDT-RSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+D+T +A   AS  +  S EE     E A AA  CRRDN + CL
Sbjct: 759 NAIQFTVDQTALAKKKASDSSPTSNEEKPKKDEDAAAA--CRRDNPDGCL 806



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DI +FL+LKKNTGKEE RARDLFY LWIPD FM+RVE+D  WSLMC
Sbjct: 303 RPGAFAIYLEPWHADILEFLDLKKNTGKEEQRARDLFYALWIPDLFMKRVEADGMWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GEKF+ LY+KYE++G
Sbjct: 363 PNQCPGLQDCYGEKFEKLYEKYESQG 388



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  +++ LNK IFETIYYGA+ ASC++AA +GPY+TYEGSP S
Sbjct: 516 IGVQGLADAFILMRYPFESQKAQELNKLIFETIYYGAVTASCDLAATNGPYETYEGSPAS 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQYD+W VTP++LWDW ALK     +GL+
Sbjct: 576 QGLLQYDLWNVTPSNLWDWEALKKKVKEHGLR 607



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 13/123 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  GI Q    GV  T+L D  A +  A +      +AIL ++IE            +++
Sbjct: 53  VISGIYQ----GVKTTEL-DTLAAETAASMTTKHPDYAILAARIEVSN--------LHKE 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+EELYN VN +    +P+IS +  +II K+ADRLNSAIIYDRD+ YN+FGFK
Sbjct: 100 TKKVFSEVMEELYNYVNPKNNKHSPLISKETLDIIQKHADRLNSAIIYDRDYQYNYFGFK 159

Query: 771 YDM 773
             M
Sbjct: 160 TLM 162



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K +  +   KLWFAIL+SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 389 KYMRQIKAQKLWFAILESQTETGTPYMLYKDACNSKSNQKNLGTIK 434


>gi|348534733|ref|XP_003454856.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Oreochromis niloticus]
          Length = 793

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/503 (73%), Positives = 429/503 (85%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVENNEDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL + WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYM+YKDACN
Sbjct: 353 PADCPGLDECWGEEFEELYTRYEREGRVKRVVKAQQLWYAIIESQTETGTPYMVYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY+ P ++TY+F KL  V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-ERTYDFKKLAYVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNK+ID+N+YPVEEAR SNMRHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVRNLNKVIDINYYPVEEARRSNMRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  G Y+TYEGSPVS+GILQYDMW  TPTDLWDW  LKEKIAKH
Sbjct: 532 FETIYYAALEASCELAAELGTYETYEGSPVSKGILQYDMWEKTPTDLWDWKLLKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI +NGSIQ+I  IP  LK LYKTVWEI QKTVL MAADRGA+IDQSQSLNI+
Sbjct: 652 NEEMKNQLIAHNGSIQNINEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+  A  +    S++E
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLKEAQPA--TSSEQE 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           I   +E+  AAM+C  +NK++C+
Sbjct: 770 I---KERNKAAMVCSLENKDECL 789



 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 191/229 (83%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWEKTPTDLWDWKLLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+QLI +NGSIQ+I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQLIAHNGSIQNINEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGA+IDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTVLKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+  A  +  T S++EI   +E+  AAM+C  +NK++CL
Sbjct: 746 NPIQFTLNKEKLKEAQPA--TSSEQEI---KERNKAAMVCSLENKDECL 789



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVENNEDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P  C GL + WGE+F++LY +YE EG V
Sbjct: 353 PADCPGLDECWGEEFEELYTRYEREGRV 380



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALEASCE+AA  G Y+TYEGSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESPEAQLLNIQIFETIYYAALEASCELAAELGTYETYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPTDLWDW  LK     +G++
Sbjct: 563 KGILQYDMWEKTPTDLWDWKLLKEKIAKHGVR 594



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYSGVTTVEL-DTLAAEIAATLTTKYPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+E+LYN +N      +PM+S    +I++ N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 90  TKKVFSDVMEDLYNYINPLNKRHSPMVSKDTLDIVLANKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYM+YKDACNRKSNQQNL  I+
Sbjct: 379 RVKRVVKAQQLWYAIIESQTETGTPYMVYKDACNRKSNQQNLGTIK 424


>gi|195339753|ref|XP_002036481.1| GM11750 [Drosophila sechellia]
 gi|194130361|gb|EDW52404.1| GM11750 [Drosophila sechellia]
          Length = 812

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/506 (70%), Positives = 432/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHEVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSSPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +G Y+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I KH
Sbjct: 543 FETIYYGALEASCELAQTEGAYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808



 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 193/232 (83%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDW  LKE I KHGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIKKHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IPQK++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPQKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ---EEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K + A +M  ++  ++   ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACM 808



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLHEVWGDEFEKLYEKYEQEG 389



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE+A  +G Y+TYEGSPVS
Sbjct: 514 IGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGAYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDW  LK     +G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIKKHGVR 605



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA ++ A +      +AIL ++I     +   K A +        +V E+
Sbjct: 61  GVTTQELDNLAA-EIAAGLTCNHPDYAILAARIAVSNLHKETKKAFS--------DVFED 111

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 112 LYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAI+++Q+ETG PYML+KDACNRKSNQQN+  I+
Sbjct: 395 VKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQNVGTIK 435


>gi|410915400|ref|XP_003971175.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Takifugu rubripes]
          Length = 795

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/506 (73%), Positives = 427/506 (84%), Gaps = 10/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F FLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAVYLEPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSECPGLIDCWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTSKDEVAVCNLASIALNMY+ P  +TY+F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-QRTYDFNKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEA---RNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           I+ +NLNKIID+N+YPV E      SNMRHRPIGIGVQGLAD FI MR P++  E++LLN
Sbjct: 472 IIVRNLNKIIDINYYPVPEVCLLLRSNMRHRPIGIGVQGLADAFILMRHPYESPEAQLLN 531

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIYY ALEASCE+AA  GPY+TY GSPVS+G+LQYDMWG TPTDLWDW ALKEKI
Sbjct: 532 IQIFETIYYAALEASCELAAEFGPYETYAGSPVSKGVLQYDMWGKTPTDLWDWNALKEKI 591

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           AKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E 
Sbjct: 592 AKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTER 651

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW D MK+QLI +NGSIQDI+ IP  LK LYKTVWEI QKTVL MAADRGA+IDQSQSL
Sbjct: 652 GLWSDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWEISQKTVLKMAADRGAYIDQSQSL 711

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           NI++AE  Y K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT+++ K+  A   + A+S
Sbjct: 712 NIHIAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNREKLKEA---QSAKS 768

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCI 593
           +EE    +E+ MAAM+C   NK++C+
Sbjct: 769 KEEA---KERNMAAMVCSLANKDECM 791



 Score =  346 bits (888), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/229 (72%), Positives = 193/229 (84%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDW ALKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 569 LQYDMWGKTPTDLWDWNALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW D MK+QLI +NGSIQDI+ IP  LK LYKTVWE
Sbjct: 629 TRRVLSGEFQIVNPHLLKDLTERGLWSDAMKNQLIAHNGSIQDIQEIPDDLKQLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGA+IDQSQSLNI++AE  Y K++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 689 ISQKTVLKMAADRGAYIDQSQSLNIHIAEPTYGKLTSMHFYGWKLGLKTGMYYLRTKPAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+++ K+  A ++K   S+EE    +E+ MAAM+C   NK++C+
Sbjct: 749 NPIQFTLNREKLKEAQSAK---SKEEA---KERNMAAMVCSLANKDECM 791



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F FLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAVYLEPWHSDVFAFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F++LY +YE EG
Sbjct: 353 PSECPGLIDCWGEEFEELYTRYEKEG 378



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR P++  E++LLN QIFETIYY ALEASCE+AA  GPY+TY GSPVS
Sbjct: 506 IGVQGLADAFILMRHPYESPEAQLLNIQIFETIYYAALEASCELAAEFGPYETYAGSPVS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMWG TPTDLWDW ALK     +G++
Sbjct: 566 KGVLQYDMWGKTPTDLWDWNALKEKIAKHGVR 597



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PMIS +  +I+++N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNKQHSPMISKETLDIVLENKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|432890244|ref|XP_004075435.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Oryzias latipes]
          Length = 794

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/503 (72%), Positives = 421/503 (83%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVES+  WSLMC
Sbjct: 294 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WG +F++LY KYE EG+  R V A++LW A+++SQ ETGTPYMLYKDACN
Sbjct: 354 PNECPGLDECWGVEFEELYTKYEREGRVKRVVKAQQLWHAVIESQTETGTPYMLYKDACN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEIVEYTS DEVAVCNLASIALNMY+ P ++T++F KL  V K
Sbjct: 414 KKSNQQNLGTIKCSNLCTEIVEYTSHDEVAVCNLASIALNMYVTP-ERTFDFKKLASVTK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 473 VIVKNLNKIIDINYYPVPEAEKSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  GPY+TY+G PVS+G+LQYDMW  TPTDLWDW  LKEKIAKH
Sbjct: 533 FETIYYAALEASCELAAELGPYETYDGCPVSRGVLQYDMWEKTPTDLWDWKLLKEKIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 593 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK++LI NNGSIQDI  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 653 SEEMKNKLIGNNGSIQDIAEIPNDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+    +SK       
Sbjct: 713 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLKEGQSSKMPE---- 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            Q  +E+  AAM+C  +N++DC+
Sbjct: 769 -QDAKERNTAAMVCSLENRDDCL 790



 Score =  342 bits (876), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 187/229 (81%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 567 LQYDMWEKTPTDLWDWKLLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK++LI NNGSIQDI  IP  LK LYKTVWE
Sbjct: 627 TRRVLSGEFQIVNPHLLKDLTERGLWSEEMKNKLIGNNGSIQDIAEIPNDLKQLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 687 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+    +SK        Q  +E+  AAM+C  +N++DCL
Sbjct: 747 NPIQFTLNKEKLKEGQSSKMPE-----QDAKERNTAAMVCSLENRDDCL 790



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVES+  WSLMC
Sbjct: 294 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WG +F++LY KYE EG V
Sbjct: 354 PNECPGLDECWGVEFEELYTKYEREGRV 381



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALEASCE+AA  GPY+TY+G PVS
Sbjct: 504 IGVQGLADAFILMRYPFESPEAQLLNIQIFETIYYAALEASCELAAELGPYETYDGCPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMW  TPTDLWDW  LK     +G++
Sbjct: 564 RGVLQYDMWEKTPTDLWDWKLLKEKIAKHGVR 595



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 40  ITMKVIQGLYSGVTTVEL-DTLAAEIAATLTTKYPDYAILAARIAVSN--------LHKE 90

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+LY+ VN      +PMIS +  +I+++N DRLNSAII+DRDF+YNFFGFK
Sbjct: 91  TKKVFSEVMEDLYSYVNPLNKCHSPMISKETLDIVLENKDRLNSAIIFDRDFSYNFFGFK 150



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           + WGV   +L+       +V  +V   +LW A+++SQ ETGTPYMLYKDACN+KSNQQNL
Sbjct: 362 ECWGVEFEELYTKYEREGRVKRVVKAQQLWHAVIESQTETGTPYMLYKDACNKKSNQQNL 421

Query: 717 EVIE 720
             I+
Sbjct: 422 GTIK 425


>gi|17352481|ref|NP_477027.1| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|12644286|sp|P48591.2|RIR1_DROME RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|4928448|gb|AAD33590.1|AF132143_1 ribonucleoside reductase M1 subunit [Drosophila melanogaster]
 gi|21430662|gb|AAM51009.1| RE58177p [Drosophila melanogaster]
 gi|22946135|gb|AAF52913.2| ribonucleoside diphosphate reductase large subunit [Drosophila
           melanogaster]
 gi|220942628|gb|ACL83857.1| RnrL-PA [synthetic construct]
          Length = 812

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/506 (69%), Positives = 431/506 (85%), Gaps = 4/506 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY+KYE EG+  R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A  +GPY+TYEGSPVS+GILQYDMW   PT+LWDW  LKE I  H
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IP K++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M  ++  ++  
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782

Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
            ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808



 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 153/232 (65%), Positives = 191/232 (82%), Gaps = 3/232 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PT+LWDW  LKE I  HGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IP K++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ---EEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K + A +M  ++  ++   ++ + D+E+ MA M+C  +NK+ C+
Sbjct: 757 NAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACM 808



 Score =  153 bits (386), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLHDVWGDEFEKLYEKYEQEG 389



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE+A  +GPY+TYEGSPVS
Sbjct: 514 IGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PT+LWDW  LK    ++G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIRMHGVR 605



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA ++ A +      +AIL ++I     +   K A +        +V E+
Sbjct: 61  GVTTQELDNLAA-EIAAGLTCNHPDYAILAARIAVSNLHKETKKAFS--------DVFED 111

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN VNKET  + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 112 LYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 658 YDMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+WG     L++    +  A   V    LWFAI+++Q+ETG PYML+KDACNRKSNQQN
Sbjct: 371 HDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQN 430

Query: 716 LEVIE 720
           +  I+
Sbjct: 431 VGTIK 435


>gi|405962741|gb|EKC28390.1| Ribonucleoside-diphosphate reductase large subunit [Crassostrea
           gigas]
          Length = 790

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/503 (72%), Positives = 427/503 (84%), Gaps = 4/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+ KKNTGKEE RARDLFY +WIPD FM+RVE + +W+LM 
Sbjct: 288 RPGAFAIYLEPWHADVFMFLDCKKNTGKEEQRARDLFYAMWIPDLFMKRVEKNEEWTLMD 347

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F+ LY+KYE EGK  + + A++LW+AI+++Q ETGTPYMLYKD CN
Sbjct: 348 PHECPGLHDCWGEEFETLYQKYEQEGKGRKTIKAQQLWYAIIEAQTETGTPYMLYKDHCN 407

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S DEVAVCNLASIALNMY+ P DKTY+F KLK V K
Sbjct: 408 RKSNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASIALNMYVKP-DKTYDFEKLKSVTK 466

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SNMRHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 467 VIVRNLNKIIDINYYPVPEAERSNMRHRPIGIGVQGLADAFILMRYPFESEEAQLLNKQI 526

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A RDGPY+TY+G PVS+GILQ+DMW VTPTDL DW +L+ KI KH
Sbjct: 527 FETIYYAALEASCELAERDGPYETYQGCPVSKGILQHDMWNVTPTDLHDWNSLRAKIKKH 586

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES E YTSNIYSRRVLSGEFQVVN HL++D+ E GLW
Sbjct: 587 GIRNSLLLAPMPTASTAQILGNNESIEAYTSNIYSRRVLSGEFQVVNQHLMKDMTERGLW 646

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I   GSIQ+IE IP++++DLYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 647 DDDMKNKIIAYGGSIQNIEKIPKEIRDLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 706

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+ WKLGLKTGMYYLRTKPAA+AI+FT+DKTK+    + K A  QE 
Sbjct: 707 IAEPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAASAIKFTVDKTKLTQP-SGKSAAEQE- 764

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
              +  Q MAAM+C   NKEDC+
Sbjct: 765 -MEETTQNMAAMVCSLQNKEDCM 786



 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 194/229 (84%), Gaps = 3/229 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW VTPTDL DW +L+ KI KHG+RNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 561 LQHDMWNVTPTDLHDWNSLRAKIKKHGIRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN HL++D+ E GLWDD+MK+++I   GSIQ+IE IP++++DLYKTVWE
Sbjct: 621 SRRVLSGEFQVVNQHLMKDMTERGLWDDDMKNKIIAYGGSIQNIEKIPKEIRDLYKTVWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+ WKLGLKTGMYYLRTKPAA
Sbjct: 681 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYAWKLGLKTGMYYLRTKPAA 740

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+DKTK+     S  + +++E++ +  Q MAAM+C   NKEDC+
Sbjct: 741 SAIKFTVDKTKLTQ--PSGKSAAEQEME-ETTQNMAAMVCSLQNKEDCM 786



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+ KKNTGKEE RARDLFY +WIPD FM+RVE + +W+LM 
Sbjct: 288 RPGAFAIYLEPWHADVFMFLDCKKNTGKEEQRARDLFYAMWIPDLFMKRVEKNEEWTLMD 347

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F+ LY+KYE EG
Sbjct: 348 PHECPGLHDCWGEEFETLYQKYEQEG 373



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLNKQIFETIYY ALEASCE+A RDGPY+TY+G PVS
Sbjct: 498 IGVQGLADAFILMRYPFESEEAQLLNKQIFETIYYAALEASCELAERDGPYETYQGCPVS 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW VTPTDL DW +L+     +G++
Sbjct: 558 KGILQHDMWNVTPTDLHDWNSLRAKIKKHGIR 589



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 44/54 (81%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+++LY  +N +T   +PMIS + + IIMKNADRLNSAII+DRDFNY +FGFK
Sbjct: 101 DVMDDLYKWINPKTNKHSPMISPEIHSIIMKNADRLNSAIIFDRDFNYQYFGFK 154



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW+AI+++Q ETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 383 QLWYAIIEAQTETGTPYMLYKDHCNRKSNQQNLGTIK 419


>gi|357612500|gb|EHJ68034.1| hypothetical protein KGM_04264 [Danaus plexippus]
          Length = 780

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/506 (71%), Positives = 428/506 (84%), Gaps = 15/506 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RVE +  WSLMC
Sbjct: 285 RPGAFAIYVEPWHSDIFEFLDLKKNTGKEEVRARELFYALWIPDLFMKRVERNENWSLMC 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D +GE+F+ LY+KYE E +F+RQV A+ LW AI+++Q+ETGTPYMLYKDACN
Sbjct: 345 PHNCPGLYDCYGEEFEALYEKYEQENRFVRQVRAQILWKAIIEAQVETGTPYMLYKDACN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEIVEYTS+DEVAVCNLASIALNM++   +K ++F KLK+V K
Sbjct: 405 RKSNQKNLGTIKCSNLCTEIVEYTSEDEVAVCNLASIALNMFVE--NKKFDFKKLKEVTK 462

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNKIIDVNFYPV EA+NSNM+HRPIGIGVQGLAD F+ MRLP++  ++ LLN+QI
Sbjct: 463 TVTQNLNKIIDVNFYPVPEAKNSNMKHRPIGIGVQGLADAFVLMRLPYESEKAILLNQQI 522

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A RDG Y TYEGSP SQGILQYDMW  TPTDLWDWAALKEKIAKH
Sbjct: 523 FETIYYGALEASCELAERDGVYSTYEGSPASQGILQYDMWNKTPTDLWDWAALKEKIAKH 582

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVNHHLL DL +  LW
Sbjct: 583 GLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNHHLLTDLTQADLW 642

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+ MK+ +I NNGSIQ+IE IP+ ++DLYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 643 DEEMKNLIIHNNGSIQNIEAIPKDIRDLYKTVWEISVKTTIQMAADRGAFIDQSQSFNIH 702

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKDARSQ 568
           +AE NY K++S+HF+ WK+GLKTGMYYLRTKPAANAIQFT+DK+  K+ N  A KD    
Sbjct: 703 VAEPNYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKSKVKITNGNAQKD---- 758

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIG 594
                  E +M+ + C   NK++C+ 
Sbjct: 759 -------EASMSMIACSLANKDECLS 777



 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 187/231 (80%), Gaps = 13/231 (5%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWAALKEKIAKHG+RNSLL+APMPTASTAQILGNNESFEP+TSNIY
Sbjct: 557 LQYDMWNKTPTDLWDWAALKEKIAKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIY 616

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVNHHLL DL +  LWD+ MK+ +I NNGSIQ+IE IP+ ++DLYKTVWE
Sbjct: 617 QRRVLSGEFQVVNHHLLTDLTQADLWDEEMKNLIIHNNGSIQNIEAIPKDIRDLYKTVWE 676

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KT + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK+GLKTGMYYLRTKPAA
Sbjct: 677 ISVKTTIQMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYAWKMGLKTGMYYLRTKPAA 736

Query: 949 NAIQFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+DK+  K+ N  A KD           E +M+ + C   NK++CL
Sbjct: 737 NAIQFTVDKSKVKITNGNAQKD-----------EASMSMIACSLANKDECL 776



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MRLP++  ++ LLN+QIFETIYYGALEASCE+A RDG Y TYEGSP S
Sbjct: 494 IGVQGLADAFVLMRLPYESEKAILLNQQIFETIYYGALEASCELAERDGVYSTYEGSPAS 553

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW  TPTDLWDWAALK     +GL+
Sbjct: 554 QGILQYDMWNKTPTDLWDWAALKEKIAKHGLR 585



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 72/85 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RVE +  WSLMC
Sbjct: 285 RPGAFAIYVEPWHSDIFEFLDLKKNTGKEEVRARELFYALWIPDLFMKRVERNENWSLMC 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D +GE+F+ LY+KYE E
Sbjct: 345 PHNCPGLYDCYGEEFEALYEKYEQE 369



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   +V+ +LYN++N  T  R+PMISD HYEIIM N DRL+SAI+YDRDF YN+F
Sbjct: 94  HKETKKHFSDVMTDLYNIINPYTKKRSPMISDFHYEIIMNNKDRLDSAIVYDRDFKYNYF 153

Query: 768 GFK 770
           GFK
Sbjct: 154 GFK 156



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 381 LWKAIIEAQVETGTPYMLYKDACNRKSNQKNLGTIK 416


>gi|348538826|ref|XP_003456891.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Oreochromis niloticus]
          Length = 793

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/503 (72%), Positives = 425/503 (84%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F+FLELKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAVYLEPWHFDVFEFLELKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSECPGLDECWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTSKDEVAVCNLASIALNMY+ P +KTY+F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-EKTYDFKKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  GPY+TY GSPVS+GILQY+MW  TPTDLWDW  LKEKIAKH
Sbjct: 532 FETIYYAALEASCELAAELGPYETYPGSPVSKGILQYEMWNKTPTDLWDWKVLKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK+QLI +NGSIQ+I+ IP  LK LYKTVWEI QKTVL MAADRG +IDQSQSLNI+
Sbjct: 652 NEDMKNQLIAHNGSIQNIDDIPDDLKQLYKTVWEISQKTVLKMAADRGTYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K+SSMHF+GWKLGLKTGMYYLRTKPAAN IQFT++K K+  A ++K    +  
Sbjct: 712 IAEPNYGKLSSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKEKLKEAQSAKSVEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C   NK++C+
Sbjct: 770 ---TRERNTAAMVCSLANKDECL 789



 Score =  339 bits (869), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 189/229 (82%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW  TPTDLWDW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYEMWNKTPTDLWDWKVLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW+++MK+QLI +NGSIQ+I+ IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEDMKNQLIAHNGSIQNIDDIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRG +IDQSQSLNI++AE NY K+SSMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 686 ISQKTVLKMAADRGTYIDQSQSLNIHIAEPNYGKLSSMHFYGWKLGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+  A ++K    +      +E+  AAM+C   NK++CL
Sbjct: 746 NPIQFTLNKEKLKEAQSAKSVEEE-----TRERNTAAMVCSLANKDECL 789



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F+FLELKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAVYLEPWHFDVFEFLELKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WGE+F++LY +YE EG
Sbjct: 353 PSECPGLDECWGEEFEELYTRYEKEG 378



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALEASCE+AA  GPY+TY GSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESPEAQLLNIQIFETIYYAALEASCELAAELGPYETYPGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQY+MW  TPTDLWDW  LK     +G++
Sbjct: 563 KGILQYEMWNKTPTDLWDWKVLKEKIAKHGVR 594



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N      +PMIS +  +++++N  RLNS+IIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYINPLNKRHSPMISKETLDVVLENKARLNSSIIYDRDFSYNFFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|195146786|ref|XP_002014365.1| GL19156 [Drosophila persimilis]
 gi|194106318|gb|EDW28361.1| GL19156 [Drosophila persimilis]
          Length = 821

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/516 (68%), Positives = 429/516 (83%), Gaps = 13/516 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LK+NTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEANESWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGEKF++LY KYE EG+  R V A+ LWFAI++SQ+ETG PYML+KD+CN
Sbjct: 364 PHKCPGLQDVWGEKFEELYVKYEQEGRANRTVEAQALWFAIIESQVETGNPYMLFKDSCN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DEVAVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V KNLNKIID+N+YP+ EA+ SN+RHRPIGIGVQGLAD  I MR P++  E+ LLN+QI
Sbjct: 483 TVAKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGLADALILMRFPYESEEAGLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+A   G Y+TYEGSPVS+GILQYDMW  TPT+LWDW +LKE I KH
Sbjct: 543 FETIYFGALEASCELAEEFGVYETYEGSPVSKGILQYDMWDKTPTNLWDWQSLKEDIKKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+++I + GSIQDIE IPQK++DLYKTVWEI  K+ + MAADRGAFIDQSQS N++
Sbjct: 663 DDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNVH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA----------- 559
           +AE NY K++S+HF  WK GLKTGMYYLRTKPAANAIQFT+DK + A+A           
Sbjct: 723 VAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAANAIQFTVDKKQAASALNDLNGSFNKS 782

Query: 560 -MASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            +  +   +   I++D+E+ MA M+C  +NK+ C+ 
Sbjct: 783 TLLDESTNNSHHIESDRERHMAEMVCSLENKDACLS 818



 Score =  342 bits (878), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 158/241 (65%), Positives = 193/241 (80%), Gaps = 12/241 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPT+LWDW +LKE I KHG+RNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKTPTNLWDWQSLKEDIKKHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD MK+++I + GSIQDIE IPQK++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNKIISSRGSIQDIETIPQKVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS N+++AE NY K++S+HF  WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNVHVAEPNYGKLTSIHFFSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKTKMANA------------MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           NAIQFT+DK + A+A            +  + T +   I++D+E+ MA M+C  +NK+ C
Sbjct: 757 NAIQFTVDKKQAASALNDLNGSFNKSTLLDESTNNSHHIESDRERHMAEMVCSLENKDAC 816

Query: 997 L 997
           L
Sbjct: 817 L 817



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LK+NTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKRNTGKEENRARDLFYALWIPDLFMKRVEANESWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGEKF++LY KYE EG
Sbjct: 364 PHKCPGLQDVWGEKFEELYVKYEQEG 389



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 69/83 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD  I MR P++  E+ LLN+QIFETIY+GALEASCE+A   G Y+TYEGSPVS
Sbjct: 514 IGVQGLADALILMRFPYESEEAGLLNQQIFETIYFGALEASCELAEEFGVYETYEGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQYDMW  TPT+LWDW +LK
Sbjct: 574 KGILQYDMWDKTPTNLWDWQSLK 596



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 44/54 (81%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V E+L+  +N+ET T +PM+S+ HY I+  NADRLNSAIIYDRDF YN+FGFK
Sbjct: 107 DVFEDLFKNINRETNTASPMVSEFHYNIVKNNADRLNSAIIYDRDFGYNYFGFK 160



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQ+ETG PYML+KD+CNRKSNQQN+  I+
Sbjct: 400 LWFAIIESQVETGNPYMLFKDSCNRKSNQQNVGTIK 435


>gi|71895081|ref|NP_001026008.1| ribonucleoside-diphosphate reductase large subunit [Gallus gallus]
 gi|53127690|emb|CAG31174.1| hypothetical protein RCJMB04_2p9 [Gallus gallus]
          Length = 790

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/503 (72%), Positives = 430/503 (85%), Gaps = 9/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  R V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++ LN+QI
Sbjct: 472 VIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A + GPY+TYEGSPVS+GILQYDMW VTP+DLWDW ALKEKIAK+
Sbjct: 532 FETIYYGALEASCELAEQQGPYETYEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL++PMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLL+DL E GLW
Sbjct: 592 GVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I +NGSIQ+I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K    +  ++  S+EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEK----LREREKASEEE 767

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 768 ----KERNKAAMVCSLENRDECM 786



 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 192/229 (83%), Gaps = 8/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP+DLWDW ALKEKIAK+GVRNSLL++PMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPSDLWDWKALKEKIAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLL+DL E GLW++ MK+Q+I +NGSIQ+I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNISEIPADLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K    +  ++  S+EE    +E+  AAM+C  +N+++C+
Sbjct: 746 NPIQFTLNKEK----LREREKASEEE----KERNKAAMVCSLENRDECM 786



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/99 (67%), Positives = 80/99 (80%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   IGVQGLAD FI MR PF+  E++ LN+QIFETIYYGALEASCE+A + GPY+T
Sbjct: 496 RRHRPIGIGVQGLADAFILMRFPFESPEAQRLNQQIFETIYYGALEASCELAEQQGPYET 555

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           YEGSPVS+GILQYDMW VTP+DLWDW ALK     YG++
Sbjct: 556 YEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIAKYGVR 594



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+++LYN +N   G  +PMIS +  +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMDDLYNYINPHNGKHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|410909836|ref|XP_003968396.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Takifugu rubripes]
          Length = 794

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/503 (72%), Positives = 426/503 (84%), Gaps = 5/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFYG+WIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHSDIFDFLELKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL++ WGE+F+ LY KYE EG+  R V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PDECPGLNECWGEEFEKLYTKYEKEGRVKRVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTS DEVAVCNLAS+ALNMY+  A++T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASVALNMYVT-AERTFDFQKLAAVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VVVKNLNKIIDINYYPVPEAEKSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  GPY+TYEGSPVS+GILQYDMW  TPTDL DW  LKEKIAKH
Sbjct: 532 FETIYYAALEASCELAAELGPYETYEGSPVSKGILQYDMWEKTPTDLLDWKLLKEKIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK++LI +NGSIQ+I GIP  +K LYKTVWEI QKT++ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEDMKNKLIAHNGSIQNINGIPNDVKQLYKTVWEISQKTIIKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+        A S+EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLKETQDPVKA-SEEE 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           +   +E+ MAAM+C   N+++C+
Sbjct: 771 V---KERNMAAMVCSLQNRDECL 790



 Score =  332 bits (851), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 189/229 (82%), Gaps = 4/229 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDL DW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWEKTPTDLLDWKLLKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW+++MK++LI +NGSIQ+I GIP  +K LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEDMKNKLIAHNGSIQNINGIPNDVKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++ MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTIIKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+          S+EE+   +E+ MAAM+C   N+++CL
Sbjct: 746 NPIQFTLNKEKLKETQDPVKA-SEEEV---KERNMAAMVCSLQNRDECL 790



 Score =  157 bits (397), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 76/88 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFYG+WIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHSDIFDFLELKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+ C GL++ WGE+F+ LY KYE EG V
Sbjct: 353 PDECPGLNECWGEEFEKLYTKYEKEGRV 380



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALEASCE+AA  GPY+TYEGSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESPEAQLLNTQIFETIYYAALEASCELAAELGPYETYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPTDL DW  LK     +G++
Sbjct: 563 KGILQYDMWEKTPTDLLDWKLLKEKIAKHGVR 594



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYNGVTTVEL-DTLAAEISATLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+E+LYN +N      +PM+S +  +I+++N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 90  TKKVFSDVMEDLYNYINPLNKRHSPMVSKETLDIVLQNKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 379 RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|91080433|ref|XP_968671.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005754|gb|EFA02202.1| hypothetical protein TcasGA2_TC007859 [Tribolium castaneum]
          Length = 808

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/502 (70%), Positives = 421/502 (83%), Gaps = 2/502 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH DI DFL LKKNTGKE+ RARDLF+ LW PD FMRRV++D +WSLMC
Sbjct: 304 RPGACAIYLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDEKWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WGE+F+ LY+KYE +G+++RQ+PAR +W AI  SQ+ETGTPYMLYKDACN
Sbjct: 364 PHQSPGLADCWGEEFEKLYEKYETDGRYVRQLPARDVWRAICVSQVETGTPYMLYKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+ SNLCTEIVE+TS DE+AVCNLASIA+NM++      Y+F KLK++ K
Sbjct: 424 RKSNQQNLGTIRSSNLCTEIVEFTSPDEIAVCNLASIAVNMFVKADRSGYDFNKLKEITK 483

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNK+ID+N+YP+ EAR SN+RHRP+GIGVQGLAD FI +R+PFD  E++ LN+QI
Sbjct: 484 VVAKNLNKVIDLNYYPLPEARKSNLRHRPVGIGVQGLADAFILLRMPFDSPEAKALNRQI 543

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A + GPY+TYEGSPVSQG+LQYDMWGVTPT+LWDW+ LK+KIAK+
Sbjct: 544 FETLYYGALEASCELAEKYGPYETYEGSPVSQGVLQYDMWGVTPTNLWDWSDLKKKIAKY 603

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY RRVLSGEFQVVN HLL+DL E GLW
Sbjct: 604 GVRNSLLLAPMPTASTAQILGNNESTEPYTSNIYVRRVLSGEFQVVNQHLLKDLTERGLW 663

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+Q+I N GSIQ+I GIP  LK LYKTVWEI QK ++DMAADRGAFIDQSQS+NI+
Sbjct: 664 DDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWEISQKVIIDMAADRGAFIDQSQSMNIH 723

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A  NY  MSSMHF+GW  GLKTGMYYLRTKPAAN IQFT+DK+K+    ++   + QE 
Sbjct: 724 IAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAANPIQFTVDKSKLITKTSTGVGKVQET 783

Query: 571 IQADQEQAMAAMICRRDNKEDC 592
               +E+  AA++C   N E C
Sbjct: 784 KTTPEEE--AALVCSLRNPEAC 803



 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 185/228 (81%), Gaps = 2/228 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPT+LWDW+ LK+KIAK+GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 578 LQYDMWGVTPTNLWDWSDLKKKIAKYGVRNSLLLAPMPTASTAQILGNNESTEPYTSNIY 637

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN HLL+DL E GLWDD MK+Q+I N GSIQ+I GIP  LK LYKTVWE
Sbjct: 638 VRRVLSGEFQVVNQHLLKDLTERGLWDDTMKNQIIANYGSIQNIPGIPDDLKQLYKTVWE 697

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAFIDQSQS+NI++A  NY  MSSMHF+GW  GLKTGMYYLRTKPAA
Sbjct: 698 ISQKVIIDMAADRGAFIDQSQSMNIHIAAPNYGVMSSMHFYGWDKGLKTGMYYLRTKPAA 757

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           N IQFT+DK+K+    ++   + QE     +E+  AA++C   N E C
Sbjct: 758 NPIQFTVDKSKLITKTSTGVGKVQETKTTPEEE--AALVCSLRNPEAC 803



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 79/92 (85%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +R+PFD  E++ LN+QIFET+YYGALEASCE+A + GPY+TYEGSPVS
Sbjct: 515 IGVQGLADAFILLRMPFDSPEAKALNRQIFETLYYGALEASCELAEKYGPYETYEGSPVS 574

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQYDMWGVTPT+LWDW+ LK     YG++
Sbjct: 575 QGVLQYDMWGVTPTNLWDWSDLKKKIAKYGVR 606



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH DI DFL LKKNTGKE+ RARDLF+ LW PD FMRRV++D +WSLMC
Sbjct: 304 RPGACAIYLEPWHADILDFLNLKKNTGKEQLRARDLFFALWTPDLFMRRVKNDEKWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WGE+F+ LY+KYE +G
Sbjct: 364 PHQSPGLADCWGEEFEKLYEKYETDG 389



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 71/109 (65%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L D  A +  A++      +AIL ++I             ++++ +Q  +VI++
Sbjct: 57  GVTTVEL-DTLAAETAAMMTTNHPDYAILAARIAVSN--------LHKETKKQFSDVIDD 107

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+  V+ +TG +T MISD+H+ I+MKNADRLNS IIYDRDF+YN+FGFK
Sbjct: 108 LHKAVSSKTGRKTQMISDEHHAIVMKNADRLNSCIIYDRDFSYNYFGFK 156



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +W AI  SQ+ETGTPYMLYKDACNRKSNQQNL  I
Sbjct: 400 VWRAICVSQVETGTPYMLYKDACNRKSNQQNLGTI 434


>gi|18859325|ref|NP_571530.1| ribonucleoside-diphosphate reductase large subunit [Danio rerio]
 gi|3914656|sp|P79732.1|RIR1_DANRE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit; AltName: Full=Ribonucleotide reductase protein
           R1 class I
 gi|1695829|gb|AAB37102.1| ribonucleotide reductase protein R1 class I [Danio rerio]
          Length = 794

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/503 (71%), Positives = 420/503 (83%), Gaps = 5/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY KYE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN+QNLGTIKCSNLCTEIVEYTS DEVAVCNLASIALNMY+  +++T++F KL  V K
Sbjct: 413 RKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVT-SERTFDFQKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  GPYQTY G PVS+GILQYDMW  TPTDLWDWAALKEKIA  
Sbjct: 532 FETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIAND 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGA+IDQSQSLNI+
Sbjct: 652 NEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKP AN IQFT++K K+     +  +  +E 
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQKTTSSEDEE- 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+ +C+
Sbjct: 771 ---TKERNKAAMVCSLENRHECL 790



 Score =  332 bits (851), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 186/229 (81%), Gaps = 4/229 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWAALKEKIA  GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWEKTPTDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK+LYKTVWE
Sbjct: 626 HRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAADRGA+IDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKP A
Sbjct: 686 ISQKTILKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+      K T S++E    +E+  AAM+C  +N+ +CL
Sbjct: 746 NPIQFTLNKEKLKE--TQKTTSSEDE--ETKERNKAAMVCSLENRHECL 790



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL + WGE+F+ LY KYE EG
Sbjct: 353 PNDCPGLDECWGEEFEKLYAKYEQEG 378



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 70/83 (84%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALE+SCE+AA  GPYQTY G PVS
Sbjct: 503 IGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQYDMW  TPTDLWDWAALK
Sbjct: 563 KGILQYDMWEKTPTDLWDWAALK 585



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+E+LYN VN      +PMIS +  +I++ N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 96  EVMEDLYNYVNPLNSRHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSN+QNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNLGTIK 424


>gi|260789736|ref|XP_002589901.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
 gi|229275086|gb|EEN45912.1| hypothetical protein BRAFLDRAFT_266176 [Branchiostoma floridae]
          Length = 787

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/503 (69%), Positives = 425/503 (84%), Gaps = 12/503 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+FL+ +KNTGKEE RARDLFY +WIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F+ LY+ YE  GK  R V A+++W+AI+++Q ETG PYMLYKDACN
Sbjct: 353 PHECPGLEDCWGEEFEKLYEGYEKAGKGRRTVKAQQVWYAIIEAQTETGNPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIKCSNLCTEIVEYTS DEVAVCNLASIA+NMY+ P D TY+F KLK+V  
Sbjct: 413 SKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIAVNMYVKP-DGTYDFEKLKEVTV 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIIDVN+YPV EA NSN +HRPIGIGVQGLAD FI MR PF+  E++ LNKQI
Sbjct: 472 VITRNLNKIIDVNYYPVPEAENSNKKHRPIGIGVQGLADCFILMRYPFESEEAQHLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGA++ASCEIA   GPY+TYEG PVS+GI QYDMW VTPTDLWDWAALKE++ +H
Sbjct: 532 FETIYYGAMQASCEIAKELGPYETYEGCPVSKGIFQYDMWNVTPTDLWDWAALKEQVKQH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQVVNHHL+ DL ELGLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQVVNHHLMTDLTELGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+ +I NNGS+Q+IE IP+ +++LYKT WEI QKTV+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWEISQKTVIKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + E NY K++SMHF+GWKLGLKTGMYYLRT+PA+N IQFT+DK+K+A           + 
Sbjct: 712 IGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPASNPIQFTVDKSKLA-----------QS 760

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            +A++E+ + AM+C  +NK++C+
Sbjct: 761 TKAEKEKQLEAMVCSLENKDECL 783



 Score =  345 bits (886), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 194/229 (84%), Gaps = 11/229 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+YDMW VTPTDLWDWAALKE++ +HGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 FQYDMWNVTPTDLWDWAALKEQVKQHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHL+ DL ELGLW++ MK+ +I NNGS+Q+IE IP+ +++LYKT WE
Sbjct: 626 TRRVLSGEFQVVNHHLMTDLTELGLWNEEMKNMIIANNGSVQNIEVIPETIRNLYKTTWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+ MAADRGAFIDQSQSLNI++ E NY K++SMHF+GWKLGLKTGMYYLRT+PA+
Sbjct: 686 ISQKTVIKMAADRGAFIDQSQSLNIHIGEPNYGKITSMHFYGWKLGLKTGMYYLRTRPAS 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+DK+K+A           +  +A++E+ + AM+C  +NK++CL
Sbjct: 746 NPIQFTVDKSKLA-----------QSTKAEKEKQLEAMVCSLENKDECL 783



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++ LNKQIFETIYYGA++ASCEIA   GPY+TYEG PVS
Sbjct: 503 IGVQGLADCFILMRYPFESEEAQHLNKQIFETIYYGAMQASCEIAKELGPYETYEGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI QYDMW VTPTDLWDWAALK     +G++
Sbjct: 563 KGIFQYDMWNVTPTDLWDWAALKEQVKQHGVR 594



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+FL+ +KNTGKEE RARDLFY +WIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAMYLEPWHADIFEFLDARKNTGKEEQRARDLFYAMWIPDLFMKRVEENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F+ LY+ YE  G
Sbjct: 353 PHECPGLEDCWGEEFEKLYEGYEKAG 378



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 47/63 (74%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   +V+E+LYN VN +T   +PMIS K  +++ KNADRLNSAIIYDRDF Y +F
Sbjct: 87  HKETKKAFTDVMEDLYNWVNPKTNQHSPMISKKLMDLVTKNADRLNSAIIYDRDFKYTYF 146

Query: 768 GFK 770
           G K
Sbjct: 147 GIK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L++    A K    V   ++W+AI+++Q ETG PYMLYKDACN KSNQQNL
Sbjct: 361 DCWGEEFEKLYEGYEKAGKGRRTVKAQQVWYAIIEAQTETGNPYMLYKDACNSKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|195403619|ref|XP_002060363.1| GJ14594 [Drosophila virilis]
 gi|194140867|gb|EDW57333.1| GJ14594 [Drosophila virilis]
          Length = 818

 Score =  773 bits (1996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/513 (69%), Positives = 425/513 (82%), Gaps = 10/513 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE+F+ LY KYE EG+  R V A+ LWFAI++SQ+ETGTPYML+KD+CN
Sbjct: 364 PHKCPGLQDVWGEEFEKLYVKYEKEGRQNRIVKAQSLWFAIIESQVETGTPYMLFKDSCN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++  A+K+Y+F KLKDV K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT-AEKSYDFKKLKDVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EA+ SN+RHRPIGIGVQG AD  I MR P++  E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGFADALILMRFPYESEEASLLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE++ +DGPY+TY GSPVS+G+LQYDMW  +PTDLWDW  LK  I +H
Sbjct: 543 FETIYYGALEASCELSKKDGPYETYIGSPVSKGVLQYDMWNRSPTDLWDWDHLKRSIKQH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQI+GNNESFEPYTSNIY+RRVLSGEFQVVN HLLRDL EL LW
Sbjct: 603 GVRNSLLIAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSGEFQVVNPHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+Q+I + GSIQ+IE IP++++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDEMKNQIIASRGSIQNIESIPEEIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT---------KMANAMA 561
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT+DK             +  A
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVDKNVSVVEINAQNFVDQHA 782

Query: 562 SKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
           S +     E   ++E+ MA MIC  +NK+ C+ 
Sbjct: 783 SMEMGDTNESDIERERRMAQMICSLENKDACLS 815



 Score =  329 bits (844), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/238 (65%), Positives = 185/238 (77%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  +PTDLWDW  LK  I +HGVRNSLLIAPMPTASTAQI+GNNESFEPYTSNIY
Sbjct: 577 LQYDMWNRSPTDLWDWDHLKRSIKQHGVRNSLLIAPMPTASTAQIMGNNESFEPYTSNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLRDL EL LWDD MK+Q+I + GSIQ+IE IP++++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNPHLLRDLTELDLWDDEMKNQIIASRGSIQNIESIPEEIRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDKT---------KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+DK             +  AS +     E   ++E+ MA MIC  +NK+ CL
Sbjct: 757 NAIQFTVDKNVSVVEINAQNFVDQHASMEMGDTNESDIERERRMAQMICSLENKDACL 814



 Score =  152 bits (385), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F+ LY KYE EG
Sbjct: 364 PHKCPGLQDVWGEEFEKLYVKYEKEG 389



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD  I MR P++  E+ LLN+QIFETIYYGALEASCE++ +DGPY+TY GSPVS
Sbjct: 514 IGVQGFADALILMRFPYESEEASLLNQQIFETIYYGALEASCELSKKDGPYETYIGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMW  +PTDLWDW  LK     +G++
Sbjct: 574 KGVLQYDMWNRSPTDLWDWDHLKRSIKQHGVR 605



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA ++ A +      +A+L ++I             ++++ +   +V E+
Sbjct: 61  GVTTQELDNLAA-EIAASLTTHHADYALLAARIAVSN--------LHKETRKVFSDVFED 111

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN+ET   +PM+S+ HY I+  N+DRLNSAIIYDRDF YN+FGFK
Sbjct: 112 LYKHVNRETNETSPMVSEYHYNIVANNSDRLNSAIIYDRDFGYNYFGFK 160



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V    LWFAI++SQ+ETGTPYML+KD+CNRKSNQQN+  I+
Sbjct: 394 IVKAQSLWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIK 435


>gi|195119233|ref|XP_002004136.1| GI18284 [Drosophila mojavensis]
 gi|193914711|gb|EDW13578.1| GI18284 [Drosophila mojavensis]
          Length = 771

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/513 (69%), Positives = 430/513 (83%), Gaps = 10/513 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 257 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFFALWIPDLFMKRVEANEDWSLMC 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WGE F++LY KYE EG+  R + A+ LWFAI++SQ+ETGTPYML+KD+CN
Sbjct: 317 PHKCPGLPDVWGEDFENLYIKYEREGRANRVIKAQSLWFAIIESQVETGTPYMLFKDSCN 376

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++   +K+Y+F KLKDV K
Sbjct: 377 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT-QEKSYDFKKLKDVTK 435

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EA+ SN+RHRPIGIGVQG AD  I MR  ++  E+ LLN+QI
Sbjct: 436 IVTKNLNKIIDINYYPLPEAKKSNLRHRPIGIGVQGFADALILMRYSYESREAFLLNQQI 495

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A RDGPY+TY GSPVS+GILQYDMW  +PTDLWDW ALK+ IA+H
Sbjct: 496 FETIYYGALEASCELAQRDGPYETYVGSPVSKGILQYDMWNKSPTDLWDWNALKKSIAQH 555

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 556 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLW 615

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+Q+I + GSIQ+IE IP++++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 616 DDEMKNQIISSRGSIQNIESIPKEIRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 675

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM---ANAMASKDARS 567
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K      +N  +S +  +
Sbjct: 676 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKNISVLESNGHSSFEKNT 735

Query: 568 QEEI------QADQEQAMAAMICRRDNKEDCIG 594
             E+        ++E+ MA MIC  +NK+ C+ 
Sbjct: 736 SLEVDNPSESDIERERRMADMICSLENKDACLS 768



 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/238 (66%), Positives = 192/238 (80%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  +PTDLWDW ALK+ IA+HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY
Sbjct: 530 LQYDMWNKSPTDLWDWNALKKSIAQHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 589

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD MK+Q+I + GSIQ+IE IP++++DLYKTVWE
Sbjct: 590 TRRVLSGEFQVVNHHLLRDLTELDLWDDEMKNQIISSRGSIQNIESIPKEIRDLYKTVWE 649

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 650 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 709

Query: 949 NAIQFTIDKTKM---ANAMASKDTRSQEEI------QADQEQAMAAMICRRDNKEDCL 997
           NAIQFT++K      +N  +S +  +  E+        ++E+ MA MIC  +NK+ CL
Sbjct: 710 NAIQFTVNKNISVLESNGHSSFEKNTSLEVDNPSESDIERERRMADMICSLENKDACL 767



 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 257 RPGAFAIYLEPWHSDVFEFLDLKKNTGKEEHRARDLFFALWIPDLFMKRVEANEDWSLMC 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE F++LY KYE EG
Sbjct: 317 PHKCPGLPDVWGEDFENLYIKYEREG 342



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD  I MR  ++  E+ LLN+QIFETIYYGALEASCE+A RDGPY+TY GSPVS
Sbjct: 467 IGVQGFADALILMRYSYESREAFLLNQQIFETIYYGALEASCELAQRDGPYETYVGSPVS 526

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  +PTDLWDW ALK     +G++
Sbjct: 527 KGILQYDMWNKSPTDLWDWNALKKSIAQHGVR 558



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GV+  +L + AA ++ A +  L   +A+L ++I             ++++ +   +V E+
Sbjct: 14  GVSTQELDNLAA-EIAASLTTLHADYALLAARIAVSN--------LHKETKKVFSDVFED 64

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+  VNKET   +P++S+ HY I+  N+DRLNSAIIYDRDF YN+FGFK
Sbjct: 65  LFKHVNKETNLPSPLVSEYHYNIVKNNSDRLNSAIIYDRDFGYNYFGFK 113



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 34/36 (94%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQ+ETGTPYML+KD+CNRKSNQQN+  I+
Sbjct: 353 LWFAIIESQVETGTPYMLFKDSCNRKSNQQNVGTIK 388


>gi|432898484|ref|XP_004076524.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Oryzias latipes]
          Length = 793

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/503 (72%), Positives = 424/503 (84%), Gaps = 6/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE+F+ LY +YE EG+  R V A+++W+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSECPGLEECWGEEFEQLYIRYEKEGRAKRVVKAQQVWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEIVEYTSKDEVAVCNLASIALNMY+ P +KT++F KL  V K
Sbjct: 413 GKSNQQNLGTIKSSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-EKTFDFKKLASVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR  F+  E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVAEAERSNRRHRPIGIGVQGLADAFILMRYAFESPEAQLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+AA  G Y+TY GSPVS+GILQYDMWG TPTDLWDW ALK KIA H
Sbjct: 532 FETIYYAALEASCELAAHYGTYETYAGSPVSKGILQYDMWGKTPTDLWDWEALKAKIALH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK+QLI  NGSIQ+IEGIP  LK LYKTVWEI QKTVL MAADRGA+IDQSQSLNI+
Sbjct: 652 NEDMKNQLIAQNGSIQEIEGIPADLKQLYKTVWEISQKTVLKMAADRGAYIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT++K K+  A  ++ A  +EE
Sbjct: 712 IAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKEKLKEAQTTRSA--EEE 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           +   +E   AAM+C   NK++C+
Sbjct: 770 L---RELNNAAMVCSLANKDECL 789



 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 167/229 (72%), Positives = 191/229 (83%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDW ALK KIA HGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWGKTPTDLWDWEALKAKIALHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW+++MK+QLI  NGSIQ+IEGIP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEDMKNQLIAQNGSIQEIEGIPADLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGA+IDQSQSLNI++AE NY K++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 686 ISQKTVLKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+  A   + TRS EE    +E   AAM+C   NK++CL
Sbjct: 746 NPIQFTLNKEKLKEA---QTTRSAEE--ELRELNNAAMVCSLANKDECL 789



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WGE+F+ LY +YE EG
Sbjct: 353 PSECPGLEECWGEEFEQLYIRYEKEG 378



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/99 (65%), Positives = 77/99 (77%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   IGVQGLAD FI MR  F+  E++LLN QIFETIYY ALEASCE+AA  G Y+T
Sbjct: 496 RRHRPIGIGVQGLADAFILMRYAFESPEAQLLNIQIFETIYYAALEASCELAAHYGTYET 555

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           Y GSPVS+GILQYDMWG TPTDLWDW ALK    ++G++
Sbjct: 556 YAGSPVSKGILQYDMWGKTPTDLWDWEALKAKIALHGVR 594



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PMIS +  EI+++N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNKRHSPMISKETLEIVLENKDRLNSAIIYDRDFSYNFFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   ++W+AI++SQ ETGTPYMLYKDACN KSNQQNL  I+
Sbjct: 383 VVKAQQVWYAIIESQTETGTPYMLYKDACNGKSNQQNLGTIK 424


>gi|354495277|ref|XP_003509757.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Cricetulus griseus]
 gi|344240187|gb|EGV96290.1| Ribonucleoside-diphosphate reductase large subunit [Cricetulus
           griseus]
          Length = 792

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/503 (71%), Positives = 425/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFQKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVVPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSISEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+      KD     +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKL------KDREKALK 765

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+E+C+
Sbjct: 766 EEEEKERNTAAMVCSLENREECL 788



 Score =  330 bits (846), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVVPTDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSISEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+      KD     + + ++E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKL------KDREKALKEEEEKERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVVPTDLWDWKLLKEKIAKYGVR 594



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLHNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|167524415|ref|XP_001746543.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774813|gb|EDQ88439.1| predicted protein [Monosiga brevicollis MX1]
          Length = 784

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/503 (69%), Positives = 422/503 (83%), Gaps = 15/503 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F+FL+LKKN G +E RARDLFY LW+PD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYALWVPDLFMKRVERNEQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G +F+ LY++YE EG+  + + A+KLWFAIL+SQ ETGTPYMLYKDACN
Sbjct: 353 PHECPGLADCYGAEFEALYERYEREGRGRKTIDAQKLWFAILESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+CSNLCTEIVEY++ DEVAVCNLAS+AL  ++N   +TY+F +L DV K
Sbjct: 413 EKSNQKNLGTIRCSNLCTEIVEYSAPDEVAVCNLASLALPKFVNEDTRTYDFERLHDVVK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+IID+N+YPV EA+NSNMRHRPIGIGVQGLAD FI MRLPFD  E+R LNK+I
Sbjct: 473 IVTRNLNRIIDINYYPVPEAKNSNMRHRPIGIGVQGLADAFILMRLPFDSPEARDLNKRI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIA RDGPY+TYEGSPVSQG LQYDMWG+TPTD WDWAALK KIA+H
Sbjct: 533 FETIYHAALEASCEIAQRDGPYKTYEGSPVSQGTLQYDMWGITPTDQWDWAALKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQVVN HLL+DLVELG+W
Sbjct: 593 GVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQVVNKHLLKDLVELGIW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +++K Q+I+NNGSIQ I GIP  +K LYKTVWE+ Q+T++D+AADRGAFIDQSQS N++
Sbjct: 653 SNDIKQQIILNNGSIQAIAGIPDDIKALYKTVWELSQRTLIDLAADRGAFIDQSQSFNVH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           M E N+ K++SMHF+ WK GLKTGMYYLRT+ AA+AI+FTID TK         A+ Q  
Sbjct: 713 MGEPNFGKLTSMHFYAWKQGLKTGMYYLRTRAAASAIKFTIDATK---------AKEQ-- 761

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               QE+  AAM+C   N E C+
Sbjct: 762 ----QEKEEAAMVCSLTNPEGCL 780



 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 183/229 (79%), Gaps = 15/229 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG+TPTD WDWAALK KIA+HGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 567 LQYDMWGITPTDQWDWAALKAKIAEHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSG+FQVVN HLL+DLVELG+W +++K Q+I+NNGSIQ I GIP  +K LYKTVWE
Sbjct: 627 SRRVLSGDFQVVNKHLLKDLVELGIWSNDIKQQIILNNGSIQAIAGIPDDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + Q+T++D+AADRGAFIDQSQS N++M E N+ K++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 687 LSQRTLIDLAADRGAFIDQSQSFNVHMGEPNFGKLTSMHFYAWKQGLKTGMYYLRTRAAA 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FTID TK                +  QE+  AAM+C   N E CL
Sbjct: 747 SAIKFTIDATKA---------------KEQQEKEEAAMVCSLTNPEGCL 780



 Score =  154 bits (388), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 78/92 (84%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MRLPFD  E+R LNK+IFETIY+ ALEASCEIA RDGPY+TYEGSPVS
Sbjct: 504 IGVQGLADAFILMRLPFDSPEARDLNKRIFETIYHAALEASCEIAQRDGPYKTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWG+TPTD WDWAALK     +G++
Sbjct: 564 QGTLQYDMWGITPTDQWDWAALKAKIAEHGVR 595



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F+FL+LKKN G +E RARDLFY LW+PD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLKKNHGSDELRARDLFYALWVPDLFMKRVERNEQWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G +F+ LY++YE EG
Sbjct: 353 PHECPGLADCYGAEFEALYERYEREG 378



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWFAIL+SQ ETGTPYMLYKDACN KSNQ+NL  I
Sbjct: 388 KLWFAILESQTETGTPYMLYKDACNEKSNQKNLGTI 423



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I             ++++N+   + ++ L+  VN +TG   P++SD+ + +I 
Sbjct: 74  YAILAARISVSN--------LHKQTNKSFSQTMKALHEYVNPKTGKLAPLVSDETWAVIE 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           KN + L+S +IYDRDFN+NFFGFK
Sbjct: 126 KNKELLDSHVIYDRDFNFNFFGFK 149


>gi|213512716|ref|NP_001133985.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|209156060|gb|ACI34262.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
 gi|223648756|gb|ACN11136.1| Ribonucleoside-diphosphate reductase large subunit [Salmo salar]
          Length = 792

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 424/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFL+LKKNTGKEE RARDLFYG+WIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE+F+ LY +YE EG+  R V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PSDCPGLDECWGEEFEKLYTRYEQEGRVKRVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTS DEVAVCNLASIALNMY+ P ++T++F+KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSHDEVAVCNLASIALNMYVTP-ERTFDFSKLAYVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++N+YPV EA NSN RHRPIGIGVQGLAD FI MR PF+  E++ LN QI
Sbjct: 472 VIVRNLNKIIEINYYPVVEAENSNKRHRPIGIGVQGLADAFILMRFPFESAEAQKLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+AA  G Y+TY GSPVS+GILQY+MW  TPTDLWDW  LKE IAKH
Sbjct: 532 FETIYYAALESSCELAAELGAYETYPGSPVSKGILQYNMWDKTPTDLWDWTLLKENIAKH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+QLI  NGSIQ I  IP  LK+LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+      K+++S + 
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKL------KESQSAKN 765

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
           ++A +E   AAM+C  +N++DC+
Sbjct: 766 LEALKELNRAAMVCSLENRDDCL 788



 Score =  338 bits (866), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 190/229 (82%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW  TPTDLWDW  LKE IAKHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYNMWDKTPTDLWDWTLLKENIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+QLI  NGSIQ I  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQLIGQNGSIQGIAEIPDDLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 686 ISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+      K+++S + ++A +E   AAM+C  +N++DCL
Sbjct: 746 NPIQFTLNKEKL------KESQSAKNLEALKELNRAAMVCSLENRDDCL 788



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFL+LKKNTGKEE RARDLFYG+WIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLDLKKNTGKEEQRARDLFYGMWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+ C GL + WGE+F+ LY +YE EG V
Sbjct: 353 PSDCPGLDECWGEEFEKLYTRYEQEGRV 380



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++ LN QIFETIYY ALE+SCE+AA  G Y+TY GSPVS
Sbjct: 503 IGVQGLADAFILMRFPFESAEAQKLNTQIFETIYYAALESSCELAAELGAYETYPGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQY+MW  TPTDLWDW  LK     +G++
Sbjct: 563 KGILQYNMWDKTPTDLWDWTLLKENIAKHGVR 594



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYSGVTTVEL-DTLAAEIAATLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+E+LYN VN      +PM++ +  +I+++N DRLNSAII+DRDF+YNFFGFK
Sbjct: 90  TKKVFSDVVEDLYNYVNPLNRCHSPMVAKETLDIVLENKDRLNSAIIFDRDFSYNFFGFK 149



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 379 RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|47222551|emb|CAG02916.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 898

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/557 (67%), Positives = 430/557 (77%), Gaps = 61/557 (10%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 345 RPGAFAVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 404

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D WGE+F++LY +YE EG+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 405 PSECPGLTDCWGEEFEELYTRYEKEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 464

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+CSNLCTEIVEYTSKDEVAVCNLASIALNMY+ P  +TY+F KL  V K
Sbjct: 465 RKSNQQNLGTIRCSNLCTEIVEYTSKDEVAVCNLASIALNMYVTP-QRTYDFHKLASVTK 523

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNKIID+N+YPV EA+ SN+RHRPIGIGVQGLAD FI MR P++  E++LLN QI
Sbjct: 524 TIVKNLNKIIDINYYPVPEAKRSNLRHRPIGIGVQGLADAFILMRHPYESPEAQLLNTQI 583

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+AA  GPYQTY GSPVS+G+LQYDMWG TPTDLWDW ALKEKIAKH
Sbjct: 584 FETIYHAALEASCELAAEFGPYQTYAGSPVSRGVLQYDMWGKTPTDLWDWTALKEKIAKH 643

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV--------------- 435
           GVRNSLL+APMPTASTAQILGNNESFE YTSNIY+RRVLSGEFQV               
Sbjct: 644 GVRNSLLLAPMPTASTAQILGNNESFEAYTSNIYTRRVLSGEFQVCTRAFRPSLTAAGKA 703

Query: 436 ----------VNHHLLRDLVELGLWDDNMKDQLIVNNGSI-------------------- 465
                     VN HLL+DL E GLW D MK+QLI +NGSI                    
Sbjct: 704 ERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLIAHNGSIQVERRICCISSTISLWQKPI 763

Query: 466 ---------QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINY 516
                    Q+I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI++AE NY
Sbjct: 764 FYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNY 823

Query: 517 AKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQE 576
            K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT++K  +  A A   ARS+EE    +E
Sbjct: 824 GKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFTLNKETLKEAQA---ARSEEE---SKE 877

Query: 577 QAMAAMICRRDNKEDCI 593
           +  AA++C   NK++C+
Sbjct: 878 RNAAAVVCSLANKDECM 894



 Score =  318 bits (816), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/283 (59%), Positives = 192/283 (67%), Gaps = 60/283 (21%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDW ALKEKIAKHGVRNSLL+APMPTASTAQILGNNESFE YTSNIY
Sbjct: 618 LQYDMWGKTPTDLWDWTALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESFEAYTSNIY 677

Query: 829 SRRVLSGEFQV-------------------------VNHHLLRDLVELGLWDDNMKDQLI 863
           +RRVLSGEFQV                         VN HLL+DL E GLW D MK+QLI
Sbjct: 678 TRRVLSGEFQVCTRAFRPSLTAAGKAERKIWPRLQIVNPHLLKDLTERGLWSDGMKNQLI 737

Query: 864 VNNGSI-----------------------------QDIEGIPQKLKDLYKTVWEIPQKTV 894
            +NGSI                             Q+I  IP  LK LYKTVWEI QKTV
Sbjct: 738 AHNGSIQVERRICCISSTISLWQKPIFYKYFFNGQQNIPEIPDDLKQLYKTVWEISQKTV 797

Query: 895 LDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           L MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWKLGLKTGMYYLRTKPAAN IQFT
Sbjct: 798 LKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKLGLKTGMYYLRTKPAANPIQFT 857

Query: 955 IDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           ++K  +  A A+   RS+EE    +E+  AA++C   NK++C+
Sbjct: 858 LNKETLKEAQAA---RSEEE---SKERNAAAVVCSLANKDECM 894



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 345 RPGAFAVYLEPWHSDVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 404

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D WGE+F++LY +YE EG
Sbjct: 405 PSECPGLTDCWGEEFEELYTRYEKEG 430



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR P++  E++LLN QIFETIY+ ALEASCE+AA  GPYQTY GSPVS
Sbjct: 555 IGVQGLADAFILMRHPYESPEAQLLNTQIFETIYHAALEASCELAAEFGPYQTYAGSPVS 614

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMWG TPTDLWDW ALK     +G++
Sbjct: 615 RGVLQYDMWGKTPTDLWDWTALKEKIAKHGVR 646



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PMIS +   II +N  RLNSAIIYDRDF+YNFFGFK
Sbjct: 120 DVMEDLYNYVNPLNKLHSPMISKETLHIIRENKARLNSAIIYDRDFSYNFFGFK 173



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I
Sbjct: 435 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTI 475


>gi|61557388|ref|NP_001013254.1| ribonucleotide reductase M1 [Rattus norvegicus]
 gi|55250768|gb|AAH85906.1| Ribonucleotide reductase M1 [Rattus norvegicus]
 gi|149068638|gb|EDM18190.1| ribonucleotide reductase M1 (mapped), isoform CRA_b [Rattus
           norvegicus]
          Length = 792

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 425/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788



 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKALKEEEE------KERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    EI+M + DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVASSTLEIVMAHKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|426245029|ref|XP_004016318.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Ovis
           aries]
          Length = 791

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 425/503 (84%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY++YE EG+  + + A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+FTKL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFTKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW+ LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWSLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +            
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEE--- 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 769 ----KERNTAAMVCSLENRDECL 787



 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW+ LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWSLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +                +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEE-------KERNTAAMVCSLENRDECL 787



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY++YE EG V
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRV 380



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 92/137 (67%)

Query: 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRL 607
           + T D TK+A           + I  +      A +  + ++   IGVQGLAD FI MR 
Sbjct: 458 EHTYDFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRY 517

Query: 608 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct: 518 PFESPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTD 577

Query: 668 LWDWAALKVLALVYGLK 684
           LWDW+ LK     YG++
Sbjct: 578 LWDWSLLKEKIAKYGIR 594



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  ++   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|427794775|gb|JAA62839.1| Putative ribonucleotide reductase alpha subunit, partial
           [Rhipicephalus pulchellus]
          Length = 802

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/503 (70%), Positives = 427/503 (84%), Gaps = 21/503 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+FLELKKNTGKEE RARDLFY LWIPD FM+RVE D  WSLMC
Sbjct: 317 RPGAFAMYLEPWHADIFEFLELKKNTGKEETRARDLFYALWIPDLFMKRVEEDGVWSLMC 376

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL +   E+F+ LY +YE + ++ RQV A++LW AIL+SQIETGTPYMLYKDACN
Sbjct: 377 PHECPGLHEVHSEEFEKLYVQYETDKRYRRQVRAQQLWSAILESQIETGTPYMLYKDACN 436

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTE+VEYTS DEVAVCNLASIALN ++   D +++F KL++V++
Sbjct: 437 RKSNQKNLGTIKCSNLCTEVVEYTSPDEVAVCNLASIALNRFVK--DGSFDFQKLREVSQ 494

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN+IIDVNFYP+ EA  SN RHRPIGIGVQGLAD FI +RLPFD  ++ LLN+QI
Sbjct: 495 VITRNLNRIIDVNFYPIPEAERSNKRHRPIGIGVQGLADCFILLRLPFDSEQAMLLNRQI 554

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A +DGPY+TY+GSPVS+GILQYDMWGVTPTDLWDWAALKEKIAKH
Sbjct: 555 FETIYYGALEASCELAQKDGPYETYKGSPVSEGILQYDMWGVTPTDLWDWAALKEKIAKH 614

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQVVN HLL+DL + GLW
Sbjct: 615 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQVVNQHLLKDLTDRGLW 674

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++++K+ LI NNGS+Q+++ IP+ LK LY+TVWEIPQK VL MAADRGA+IDQSQSLN++
Sbjct: 675 NESLKNDLIANNGSVQNLD-IPEDLKALYRTVWEIPQKNVLRMAADRGAYIDQSQSLNVH 733

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A+ NYAK++SMHF+GWKLGLKTGMYYLRTKPAANAIQFT+DKT +              
Sbjct: 734 IAQPNYAKLTSMHFYGWKLGLKTGMYYLRTKPAANAIQFTVDKTAL-------------- 779

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +++ +  + C   NK++C+
Sbjct: 780 ----KKKQLDGIACSLKNKDECL 798



 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 189/229 (82%), Gaps = 19/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDWAALKEKIAKHGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 589 LQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 648

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLL+DL + GLW++++K+ LI NNGS+Q+++ IP+ LK LY+TVWE
Sbjct: 649 TRRVLSGEFQVVNQHLLKDLTDRGLWNESLKNDLIANNGSVQNLD-IPEDLKALYRTVWE 707

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK VL MAADRGA+IDQSQSLN+++A+ NYAK++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 708 IPQKNVLRMAADRGAYIDQSQSLNVHIAQPNYAKLTSMHFYGWKLGLKTGMYYLRTKPAA 767

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+DKT +                  +++ +  + C   NK++CL
Sbjct: 768 NAIQFTVDKTAL------------------KKKQLDGIACSLKNKDECL 798



 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 81/92 (88%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +RLPFD  ++ LLN+QIFETIYYGALEASCE+A +DGPY+TY+GSPVS
Sbjct: 526 IGVQGLADCFILLRLPFDSEQAMLLNRQIFETIYYGALEASCELAQKDGPYETYKGSPVS 585

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWGVTPTDLWDWAALK     +G++
Sbjct: 586 EGILQYDMWGVTPTDLWDWAALKEKIAKHGVR 617



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+FLELKKNTGKEE RARDLFY LWIPD FM+RVE D  WSLMC
Sbjct: 317 RPGAFAMYLEPWHADIFEFLELKKNTGKEETRARDLFYALWIPDLFMKRVEEDGVWSLMC 376

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL +   E+F+ LY +YE +
Sbjct: 377 PHECPGLHEVHSEEFEKLYVQYETD 401



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 46/54 (85%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+E+LYNMVN+ T  R+PMISD  Y+I+M NA+  NSAIIYDRDF+YN+FGFK
Sbjct: 120 EVVEDLYNMVNERTRLRSPMISDSVYKIVMDNAEVFNSAIIYDRDFSYNYFGFK 173



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 35/41 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW AIL+SQIETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 408 VRAQQLWSAILESQIETGTPYMLYKDACNRKSNQKNLGTIK 448


>gi|348555237|ref|XP_003463430.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Cavia porcellus]
          Length = 792

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/503 (71%), Positives = 425/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY++YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 652 NEKMKNQIIACNGSIQTILEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEKMKNQIIACNGSIQTILEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY++YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKQGRV 380



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGVR 594



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|31982026|ref|NP_033129.2| ribonucleoside-diphosphate reductase large subunit [Mus musculus]
 gi|341941976|sp|P07742.2|RIR1_MOUSE RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|16741219|gb|AAH16450.1| Ribonucleotide reductase M1 [Mus musculus]
 gi|26352964|dbj|BAC40112.1| unnamed protein product [Mus musculus]
 gi|74205882|dbj|BAE23230.1| unnamed protein product [Mus musculus]
 gi|74214440|dbj|BAE40455.1| unnamed protein product [Mus musculus]
 gi|148684655|gb|EDL16602.1| ribonucleotide reductase M1, isoform CRA_b [Mus musculus]
          Length = 792

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788



 Score =  325 bits (834), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKALKEEEE------KERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIR 594



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|200765|gb|AAA40061.1| ribonucleotide reductase subunit M1 [Mus musculus]
          Length = 792

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788



 Score =  325 bits (834), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKALKEEEE------KERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIR 594



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|291244082|ref|XP_002741928.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain-like,
           partial [Saccoglossus kowalevskii]
          Length = 759

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/506 (71%), Positives = 424/506 (83%), Gaps = 10/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFL+ KKNTGKEE RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 257 RPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRARDLFYALWIPDLFMKRVETNQDWTLMC 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D WG++F+DLY+KYE E K  + + A+ LW+AI+++Q ETGTPYMLYKDACN
Sbjct: 317 PNECPGLHDVWGKEFEDLYEKYERENKGTKTIKAQLLWYAIIEAQTETGTPYMLYKDACN 376

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN QNLGTIKCSNLCTEIVE++S DEVAVCNLASIA+NM++ P DKTY+F KL+ V  
Sbjct: 377 RKSNHQNLGTIKCSNLCTEIVEFSSPDEVAVCNLASIAVNMFVKP-DKTYDFKKLEQVTG 435

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLAD FI MR PFD +E+ LLNKQI
Sbjct: 436 VIVRNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQI 495

Query: 331 FETIYYGALEASCEIAARDGPYQTY---EGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
           FETIYYGAL+ASCE+A RDG Y++Y   +G PVS+GILQYDMW VTPTDL DW ALK+ I
Sbjct: 496 FETIYYGALKASCELAERDGAYESYKFGDGCPVSKGILQYDMWDVTPTDLHDWDALKKDI 555

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           A HG+RNSLL+APMPTASTAQILGNNES EPYT+NIYSRRVLSGEFQVVNHHLL+DL E+
Sbjct: 556 ATHGLRNSLLLAPMPTASTAQILGNNESVEPYTTNIYSRRVLSGEFQVVNHHLLKDLTEM 615

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+D+MK+ LI NNGSIQ I+GIP  +K LY+TVWEI QK +L MAADRGAFIDQSQSL
Sbjct: 616 GLWNDDMKNLLIANNGSIQSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSL 675

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           NI++AE NY K++SMHF  WK GLKTGMYYLRT+PAA+ I+FT++KT +      K   +
Sbjct: 676 NIHIAEPNYGKLTSMHFFAWKQGLKTGMYYLRTRPAADPIKFTVNKTSL------KPTTN 729

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCI 593
            E     +E+  AAM+C   NK+DC+
Sbjct: 730 VEAAAEKEEENQAAMVCSLQNKDDCL 755



 Score =  322 bits (826), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDL DW ALK+ IA HG+RNSLL+APMPTASTAQILGNNES EPYT+NIY
Sbjct: 533 LQYDMWDVTPTDLHDWDALKKDIATHGLRNSLLLAPMPTASTAQILGNNESVEPYTTNIY 592

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVNHHLL+DL E+GLW+D+MK+ LI NNGSIQ I+GIP  +K LY+TVWE
Sbjct: 593 SRRVLSGEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQSIDGIPDHIKKLYRTVWE 652

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L MAADRGAFIDQSQSLNI++AE NY K++SMHF  WK GLKTGMYYLRT+PAA
Sbjct: 653 ISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFAWKQGLKTGMYYLRTRPAA 712

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           + I+FT++KT +      K T + E     +E+  AAM+C   NK+DCL
Sbjct: 713 DPIKFTVNKTSL------KPTTNVEAAAEKEEENQAAMVCSLQNKDDCL 755



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 73/85 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFL+ KKNTGKEE RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 257 RPGAFAIYLEPWHADIFDFLDAKKNTGKEEQRARDLFYALWIPDLFMKRVETNQDWTLMC 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL D WG++F+DLY+KYE E
Sbjct: 317 PNECPGLHDVWGKEFEDLYEKYERE 341



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 76/95 (80%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTY---EGS 649
           IGVQGLAD FI MR PFD +E+ LLNKQIFETIYYGAL+ASCE+A RDG Y++Y   +G 
Sbjct: 467 IGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGAYESYKFGDGC 526

Query: 650 PVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           PVS+GILQYDMW VTPTDL DW ALK     +GL+
Sbjct: 527 PVSKGILQYDMWDVTPTDLHDWDALKKDIATHGLR 561



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 42/53 (79%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++L+N VN      +PMIS K ++II  NA+RLNSAIIYDRDFNYNFFGFK
Sbjct: 61  VMDDLFNYVNPRNNKPSPMISTKIHDIITNNAERLNSAIIYDRDFNYNFFGFK 113



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 658 YDMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+WG    DL++      K    +    LW+AI+++Q ETGTPYMLYKDACNRKSN QN
Sbjct: 324 HDVWGKEFEDLYEKYERENKGTKTIKAQLLWYAIIEAQTETGTPYMLYKDACNRKSNHQN 383

Query: 716 LEVIE 720
           L  I+
Sbjct: 384 LGTIK 388


>gi|449277321|gb|EMC85547.1| Ribonucleoside-diphosphate reductase large subunit [Columba livia]
          Length = 623

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/503 (71%), Positives = 428/503 (85%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 124 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 183

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WG++F+ LY+ YE +G+  R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 184 PNECPGLDEVWGDEFEKLYESYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDACN 243

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY+  ++ TY+F KL +V K
Sbjct: 244 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYVT-SEHTYDFKKLAEVTK 302

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++ LN+ I
Sbjct: 303 VIVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEAQRLNQHI 362

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW VTP+DLWDW ALKEKIAK+
Sbjct: 363 FETIYYGALEASCELAREQGPYETYEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIAKY 422

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL++PMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLL+DL E GLW
Sbjct: 423 GVRNSLLLSPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLW 482

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I +NGSIQ+I  IP+ LK LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 483 NEEMKNQIIAHNGSIQNIPEIPEDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 542

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+      ++     +
Sbjct: 543 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKL------REREKANK 596

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+E+C+
Sbjct: 597 EEEEKERNKAAMVCSLENREECL 619



 Score =  329 bits (844), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 192/229 (83%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP+DLWDW ALKEKIAK+GVRNSLL++PMPTASTAQILGNNES EPYTSNIY
Sbjct: 397 LQYDMWNVTPSDLWDWKALKEKIAKYGVRNSLLLSPMPTASTAQILGNNESIEPYTSNIY 456

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLL+DL E GLW++ MK+Q+I +NGSIQ+I  IP+ LK LYKTVWE
Sbjct: 457 TRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHNGSIQNIPEIPEDLKQLYKTVWE 516

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 517 ISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAA 576

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+      ++     + + ++E+  AAM+C  +N+E+CL
Sbjct: 577 NPIQFTLNKEKL------REREKANKEEEEKERNKAAMVCSLENREECL 619



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 124 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 183

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WG++F+ LY+ YE +G V
Sbjct: 184 PNECPGLDEVWGDEFEKLYESYERQGRV 211



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 78/99 (78%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   IGVQGLAD FI MR PF+  E++ LN+ IFETIYYGALEASCE+A   GPY+T
Sbjct: 327 RRHRPIGIGVQGLADAFILMRYPFESPEAQRLNQHIFETIYYGALEASCELAREQGPYET 386

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           YEGSPVS+GILQYDMW VTP+DLWDW ALK     YG++
Sbjct: 387 YEGSPVSKGILQYDMWNVTPSDLWDWKALKEKIAKYGVR 425



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 210 RVRRVVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 255


>gi|350588224|ref|XP_003129661.3| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Sus scrofa]
          Length = 634

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/507 (70%), Positives = 425/507 (83%), Gaps = 8/507 (1%)

Query: 87  LVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQW 146
           ++ FRPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  W
Sbjct: 132 IMLFRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDW 191

Query: 147 SLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYK 206
           SLMCPN C GL + WGE+F+ LY+ YE +G   + V A++LW+AI++SQ ETGTPYMLYK
Sbjct: 192 SLMCPNECPGLDEVWGEEFEKLYESYERQGHVRKVVKAQQLWYAIIESQTETGTPYMLYK 251

Query: 207 DACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLK 266
           D+CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+FTKL 
Sbjct: 252 DSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFTKLA 310

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +V K++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LL
Sbjct: 311 EVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLL 370

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEK
Sbjct: 371 NKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEK 430

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           IAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E
Sbjct: 431 IAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTE 490

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
            GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQS
Sbjct: 491 RGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQS 550

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +        
Sbjct: 551 LNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEE 610

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCI 593
                   +E+  AAM+C  +N+++C+
Sbjct: 611 E-------KERNTAAMVCSLENRDECL 630



 Score =  325 bits (833), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 409 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 468

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 469 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 528

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 529 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 588

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +                +E+  AAM+C  +N+++CL
Sbjct: 589 NPIQFTLNKEKLKDKEKVSKEEE-------KERNTAAMVCSLENRDECL 630



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 136 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 195

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 196 PNECPGLDEVWGEEFEKLYESYERQGHV 223



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 91/137 (66%)

Query: 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRL 607
           + T D TK+A           + I  +      A +  + ++   IGVQGLAD FI MR 
Sbjct: 301 EHTYDFTKLAEVTKVIVRNLNKIIDINYYPIPEASLSNKRHRPIGIGVQGLADAFILMRY 360

Query: 608 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct: 361 PFESPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTD 420

Query: 668 LWDWAALKVLALVYGLK 684
           LWDW  LK     YG++
Sbjct: 421 LWDWKLLKEKIAKYGIR 437



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query: 676 VLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 223 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 267


>gi|241672125|ref|XP_002411450.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215504101|gb|EEC13595.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 779

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/503 (69%), Positives = 426/503 (84%), Gaps = 20/503 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FMRRVE D  WSLMC
Sbjct: 293 RPGAFAMYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + +GE F+ LY KYE E ++ RQV A++LW+AIL+SQIETGTPYMLYKDACN
Sbjct: 353 PHECPGLHEVYGEDFEKLYTKYEGEKRYRRQVQAQQLWYAILESQIETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTE++EYT+ DEVAVCNLASIALN +++  + +++F KL++V++
Sbjct: 413 SKSNQKNLGTIKCSNLCTEVIEYTAPDEVAVCNLASIALNRFVH--EGSFDFQKLREVSQ 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLN+IID+NFYP+ EA  SN  HRPIGIGVQGLAD FI +RLPFDC ++RLLNKQI
Sbjct: 471 VITKNLNRIIDINFYPIPEAEKSNKSHRPIGIGVQGLADTFILLRLPFDCEKARLLNKQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TY G PVSQGILQYDMWGVTPTD+WDWAALK +IA++
Sbjct: 531 FETIYYGALEASCDLAKELGPYETYPGCPVSQGILQYDMWGVTPTDMWDWAALKARIAQY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSGEFQVVN HLL+DL + GLW
Sbjct: 591 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLTDRGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++++K+ LI NNGS+Q+++ IP  LK+LY+TVWEIPQK +L MAADRGAF+DQSQSLN++
Sbjct: 651 NEDLKNSLIANNGSVQELD-IPDDLKELYRTVWEIPQKNILQMAADRGAFVDQSQSLNVH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A+ NY K++SMHF GWKLGLKTGMYYLRTKPAA+AIQFT+DKT +         R +E+
Sbjct: 710 IAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAASAIQFTVDKTAL---------RKKEQ 760

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
                   M A+ C   NK++C+
Sbjct: 761 --------MNAVTCSLKNKDECL 775



 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/229 (67%), Positives = 189/229 (82%), Gaps = 18/229 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTD+WDWAALK +IA++GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDMWGVTPTDMWDWAALKARIAQYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN HLL+DL + GLW++++K+ LI NNGS+Q+++ IP  LK+LY+TVWE
Sbjct: 625 SRRVLSGEFQVVNQHLLKDLTDRGLWNEDLKNSLIANNGSVQELD-IPDDLKELYRTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAF+DQSQSLN+++A+ NY K++SMHF GWKLGLKTGMYYLRTKPAA
Sbjct: 684 IPQKNILQMAADRGAFVDQSQSLNVHIAQPNYGKLTSMHFFGWKLGLKTGMYYLRTKPAA 743

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AIQFT+DKT +         R +E+        M A+ C   NK++CL
Sbjct: 744 SAIQFTVDKTAL---------RKKEQ--------MNAVTCSLKNKDECL 775



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 79/92 (85%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +RLPFDC ++RLLNKQIFETIYYGALEASC++A   GPY+TY G PVS
Sbjct: 502 IGVQGLADTFILLRLPFDCEKARLLNKQIFETIYYGALEASCDLAKELGPYETYPGCPVS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMWGVTPTD+WDWAALK     YG++
Sbjct: 562 QGILQYDMWGVTPTDMWDWAALKARIAQYGVR 593



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FMRRVE D  WSLMC
Sbjct: 293 RPGAFAMYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMRRVEQDQMWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + +GE F+ LY KYE E
Sbjct: 353 PHECPGLHEVYGEDFEKLYTKYEGE 377



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/54 (72%), Positives = 49/54 (90%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+E+LYNMV+++T  RTPMISD+ Y+I+M+NA+  NSAIIYDRDFNYNFFGFK
Sbjct: 96  EVVEDLYNMVSEKTRLRTPMISDETYKIVMENAEAFNSAIIYDRDFNYNFFGFK 149



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW+AIL+SQIETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 384 VQAQQLWYAILESQIETGTPYMLYKDACNSKSNQKNLGTIK 424


>gi|344296860|ref|XP_003420120.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Loxodonta africana]
          Length = 792

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE  G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKRGRIRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRP+GIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEAFLSNKRHRPVGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIHEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECM 788



 Score =  326 bits (835), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIHEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++C+
Sbjct: 746 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECM 788



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/104 (66%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 AFLSNKRHRPVGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGVR 594



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE  G +
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKRGRI 380



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM+++   +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVANSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RIRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|149719333|ref|XP_001499936.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Equus caballus]
          Length = 792

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 426/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNM++  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVT-SEHTYDFQKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC+++  DGPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLSREDGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I+ IP  LK LYKTVWEI QKT+L MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I+ IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTILKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 82/104 (78%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC+++  D
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLSRED 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGVR 594



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKPTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|194388656|dbj|BAG60296.1| unnamed protein product [Homo sapiens]
          Length = 762

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 263 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 323 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 383 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 441

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 442 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 501

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 502 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 561

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 562 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 621

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 622 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 681

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 682 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 739

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 740 ----KERNTAAMVCSLENRDECL 758



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 536 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 595

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 596 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 655

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 656 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 715

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 716 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 758



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 461 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 520

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 521 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 564



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 263 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 323 PNECPGLDEVWGEEFEKLYASYEKQGRV 350



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 66  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 119



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 349 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 394


>gi|5006420|gb|AAD37491.1| ribonucleotide reductase M1 subunit [Homo sapiens]
          Length = 792

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 594



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|4506749|ref|NP_001024.1| ribonucleoside-diphosphate reductase large subunit [Homo sapiens]
 gi|132608|sp|P23921.1|RIR1_HUMAN RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|323714413|pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714414|pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp
 gi|323714415|pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714416|pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effector Ttp And Substrate Gdp
 gi|323714417|pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714418|pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Atp
 gi|323714419|pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|323714420|pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
           Bound To The Effectors Ttp And Datp
 gi|36065|emb|CAA42118.1| M1 subunit of ribonucleotide reductase [Homo sapiens]
 gi|36153|emb|CAA42180.1| large subunit ribonucleotide reductase [Homo sapiens]
 gi|13676332|gb|AAH06498.1| Ribonucleotide reductase M1 [Homo sapiens]
 gi|119622988|gb|EAX02583.1| ribonucleotide reductase M1 polypeptide [Homo sapiens]
 gi|123991808|gb|ABM83954.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
 gi|123999422|gb|ABM87271.1| ribonucleotide reductase M1 polypeptide [synthetic construct]
          Length = 792

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 594



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|296479831|tpg|DAA21946.1| TPA: ribonucleoside-diphosphate reductase M1 chain [Bos taurus]
          Length = 791

 Score =  762 bits (1967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY++YE EG+  + + A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+FTKL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFTKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN  HRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +            
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEE--- 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 769 ----KERNTAAMVCSLENRDECL 787



 Score =  325 bits (834), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 184/229 (80%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +                +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEE-------KERNTAAMVCSLENRDECL 787



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY++YE EG V
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRV 380



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 91/137 (66%)

Query: 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRL 607
           + T D TK+A           + I  +      A +  + ++   IGVQGLAD FI MR 
Sbjct: 458 EHTYDFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRY 517

Query: 608 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct: 518 PFESPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTD 577

Query: 668 LWDWAALKVLALVYGLK 684
           LWDW  LK     YG++
Sbjct: 578 LWDWNLLKEKIAKYGVR 594



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  ++   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|42490975|gb|AAH66217.1| Ribonucleotide reductase M1 [Mus musculus]
          Length = 792

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 422/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK L KTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERDTAAMVCSLENREECL 788



 Score =  322 bits (825), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK L KTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLCKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKALKEEEE------KERDTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIR 594



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|410972848|ref|XP_003992868.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
           reductase large subunit [Felis catus]
          Length = 790

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 424/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 291 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 351 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 411 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 470 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 530 FETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVIPTDLWDWKLLKEKIAKY 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 590 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ+I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 650 NEEMKNQIIACNGSIQNIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 710 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEE-- 767

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 768 ----KERNTAAMVCSLENREECL 786



 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 564 LQYDMWNVIPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ+I  IP  LK LYKTVWE
Sbjct: 624 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQNIPEIPDDLKQLYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 684 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 743

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 744 NPIQFTLNKEKLKDKEKATKEEEE------KERNTAAMVCSLENREECL 786



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 291 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 351 PNECPGLDEVWGEEFEKLYESYEKQGRV 378



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 489 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEH 548

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 549 GPYETYEGSPVSKGILQYDMWNVIPTDLWDWKLLKEKIAKYGIR 592



 Score = 72.8 bits (177), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I+  N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVXANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 377 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 422


>gi|195050620|ref|XP_001992932.1| GH13371 [Drosophila grimshawi]
 gi|193899991|gb|EDV98857.1| GH13371 [Drosophila grimshawi]
          Length = 821

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/516 (68%), Positives = 425/516 (82%), Gaps = 13/516 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DI +F++LKKNTGKEE RAR+LFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPDLFMKRVEANEDWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG+ F+ LY +YE EGK  R + A+ LWFAI+++Q+ETGTPYML+KD+CN
Sbjct: 364 PHKCPGLQDVWGDDFEKLYVQYEKEGKANRVIKAQTLWFAIIEAQVETGTPYMLFKDSCN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++  +DKTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVT-SDKTYDFKKLKEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNKIID+N+YP+ EA+ SN RHRPIGIGVQG AD  I MR P++  E+ LLN+QI
Sbjct: 483 TVTKNLNKIIDINYYPLPEAKKSNFRHRPIGIGVQGFADALILMRHPYESEEAALLNQQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+A ++GPY+TY GSPVS+GILQYDMWG TPTDLWDW +LK  I +H
Sbjct: 543 FETIYFGALEASCELAQKEGPYETYPGSPVSKGILQYDMWGKTPTDLWDWNSLKLSIKEH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQI+GNNESFEPYTSNIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTSNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+Q+I + GSIQ+IE IP+ ++DLYKTVWEI  KT + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIIASRGSIQNIESIPKNVRDLYKTVWEISVKTTIKMAADRGAFIDQSQSFNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK---TKMANAMA------ 561
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT+ K    K  N +       
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVAKGSPVKQTNGLHNTSFVE 782

Query: 562 ---SKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
              S +  +  E   ++E+ MA ++C  +NK+ C+ 
Sbjct: 783 HNDSMENGNVSESDLERERKMADVVCSLENKDACLS 818



 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 189/241 (78%), Gaps = 12/241 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDW +LK  I +HGVRNSLL+APMPTASTAQI+GNNESFEPYTSNIY
Sbjct: 577 LQYDMWGKTPTDLWDWNSLKLSIKEHGVRNSLLVAPMPTASTAQIMGNNESFEPYTSNIY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IP+ ++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIIASRGSIQNIESIPKNVRDLYKTVWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KT + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKTTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756

Query: 949 NAIQFTIDK---TKMANAMA---------SKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           NAIQFT+ K    K  N +          S +  +  E   ++E+ MA ++C  +NK+ C
Sbjct: 757 NAIQFTVAKGSPVKQTNGLHNTSFVEHNDSMENGNVSESDLERERKMADVVCSLENKDAC 816

Query: 997 L 997
           L
Sbjct: 817 L 817



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DI +F++LKKNTGKEE RAR+LFY LWIPD FM+RVE++  WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDILEFMDLKKNTGKEEHRARELFYALWIPDLFMKRVEANEDWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WG+ F+ LY +YE EG
Sbjct: 364 PHKCPGLQDVWGDDFEKLYVQYEKEG 389



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD  I MR P++  E+ LLN+QIFETIY+GALEASCE+A ++GPY+TY GSPVS
Sbjct: 514 IGVQGFADALILMRHPYESEEAALLNQQIFETIYFGALEASCELAQKEGPYETYPGSPVS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWG TPTDLWDW +LK+    +G++
Sbjct: 574 KGILQYDMWGKTPTDLWDWNSLKLSIKEHGVR 605



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA ++ A +      +A+L ++I             ++++ +   +V E+
Sbjct: 61  GVTTQELDNLAA-EIAASLTTQHADYALLAARIAVSN--------LHKETRKVFSDVFED 111

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +NKET   +PM+S+ HY I+ K+ADRLNSAIIYDRDF YN+FGFK
Sbjct: 112 LYKHINKETNEPSPMVSEFHYNIVKKHADRLNSAIIYDRDFGYNYFGFK 160



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 34/36 (94%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI+++Q+ETGTPYML+KD+CNRKSNQQN+  I+
Sbjct: 400 LWFAIIEAQVETGTPYMLFKDSCNRKSNQQNVGTIK 435


>gi|114635715|ref|XP_001160029.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 4 [Pan troglodytes]
 gi|397465790|ref|XP_003804664.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Pan paniscus]
 gi|410214658|gb|JAA04548.1| ribonucleotide reductase M1 [Pan troglodytes]
 gi|410262940|gb|JAA19436.1| ribonucleotide reductase M1 [Pan troglodytes]
 gi|410303308|gb|JAA30254.1| ribonucleotide reductase M1 [Pan troglodytes]
 gi|410337287|gb|JAA37590.1| ribonucleotide reductase M1 [Pan troglodytes]
          Length = 792

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  325 bits (832), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|332211477|ref|XP_003254845.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Nomascus leucogenys]
          Length = 792

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|281339148|gb|EFB14732.1| hypothetical protein PANDA_021921 [Ailuropoda melanoleuca]
          Length = 500

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 424/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 1   RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 61  PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 120

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 121 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASVALNMYVT-SEHTYDFKKLAEVTK 179

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 180 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 239

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 240 FETIYYGALEASCDLAREHGPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKY 299

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 300 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 359

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 360 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 419

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 420 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEE-- 477

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 478 ----KERNTAAMVCSLENREECL 496



 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 274 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 333

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 334 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 393

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 394 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 453

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 454 NPIQFTLNKEKLKDKEKATKEEEE------KERNTAAMVCSLENREECL 496



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
          RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 1  RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 60

Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
          PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 61 PNECPGLDEVWGEEFEKLYESYEKQGRV 88



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 199 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 258

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 259 GPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 302



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 87  RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 132


>gi|291384376|ref|XP_002708776.1| PREDICTED: ribonucleoside-diphosphate reductase M1 chain
           [Oryctolagus cuniculus]
          Length = 792

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/503 (70%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTE+VEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEG PVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGCPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEG PVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGCPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LY+ +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYSYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|164519000|ref|NP_001106767.1| ribonucleoside-diphosphate reductase large subunit [Bos taurus]
 gi|158455067|gb|AAI09487.2| RRM1 protein [Bos taurus]
          Length = 791

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 422/503 (83%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY++YE EG+  + + A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+FTKL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFTKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN  HRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST QILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTVQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +            
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEE--- 768

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 769 ----KERNTAAMVCSLENRDECL 787



 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 183/229 (79%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTAST QILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWNLLKEKIAKYGVRNSLLIAPMPTASTVQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +                +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEE-------KERNTAAMVCSLENRDECL 787



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY++YE EG V
Sbjct: 353 PNECPGLDEVWGEEFEKLYERYEKEGRV 380



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 91/137 (66%)

Query: 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRL 607
           + T D TK+A           + I  +      A +  + ++   IGVQGLAD FI MR 
Sbjct: 458 EHTYDFTKLAEVTKVIVRNLNKIIDINYYPVPEASLSNKLHRPIGIGVQGLADAFILMRY 517

Query: 608 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct: 518 PFESPEAQLLNKQIFETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTD 577

Query: 668 LWDWAALKVLALVYGLK 684
           LWDW  LK     YG++
Sbjct: 578 LWDWNLLKEKIAKYGVR 594



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  ++   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|114635721|ref|XP_001159888.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Pan troglodytes]
 gi|397465792|ref|XP_003804665.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Pan paniscus]
          Length = 695

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 315

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 316 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 374

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 375 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 434

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 435 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 494

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 495 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 554

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 555 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 614

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 615 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 672

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 673 ----KERNTAAMVCSLENRDECL 691



 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 469 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 528

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 529 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 588

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 589 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 648

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 649 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 691



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 394 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 453

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 454 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 497



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRV 283



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 52



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 282 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 327


>gi|332211481|ref|XP_003254847.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Nomascus leucogenys]
          Length = 695

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 315

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 316 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 374

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 375 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 434

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 435 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 494

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 495 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 554

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 555 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIH 614

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 615 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 672

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 673 ----KERNTAAMVCSLENRDECL 691



 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 469 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 528

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 529 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 588

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 589 ISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 648

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 649 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 691



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 394 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 453

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 454 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 497



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRV 283



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 52



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 282 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 327


>gi|194382560|dbj|BAG64450.1| unnamed protein product [Homo sapiens]
          Length = 695

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 315

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 316 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 374

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 375 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 434

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 435 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 494

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 495 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 554

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 555 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 614

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 615 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 672

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 673 ----KERNTAAMVCSLENRDECL 691



 Score =  325 bits (833), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 469 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 528

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 529 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 588

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 589 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 648

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 649 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 691



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 394 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 453

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 454 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 497



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 256 PNECPGLDEVWGEEFEKLYASYEKQGRV 283



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 52



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 282 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 327


>gi|383853838|ref|XP_003702429.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Megachile rotundata]
          Length = 821

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/520 (68%), Positives = 423/520 (81%), Gaps = 16/520 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMC
Sbjct: 299 RPGAFAVYLEPWHADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLENGVWTLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F+ LY +YE E +F RQ+ AR LW AIL +Q+ETGTPYMLYKD CN
Sbjct: 359 PHESPGLADVWGDEFETLYTRYENEKRFKRQIQARDLWTAILIAQVETGTPYMLYKDHCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIK SNLCTE+V+Y+S DEVAVCNLASIA+NM++N ++KT++F KLK V K
Sbjct: 419 RKSNQQNIGTIKSSNLCTEVVQYSSADEVAVCNLASIAVNMFVNSSNKTFDFQKLKKVTK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT NL+K+IDVN+YP+ EA+ SN RHRPIGIG+QGLAD F+ MR PF+  E++ LN QI
Sbjct: 479 IVTCNLDKVIDVNYYPIPEAKKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A   G Y+TYEGSPVS+GILQYDMW VTPTDLWDWAALKEKIAKH
Sbjct: 539 FETLYYGALEASCELAEEKGTYETYEGSPVSKGILQYDMWNVTPTDLWDWAALKEKIAKH 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLLRDL E  LW
Sbjct: 599 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLRDLTERDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+NMK+++I NNGSIQDIE IP  LK LYKTVWEI QK VL MAADRGAFIDQSQSLN++
Sbjct: 659 DENMKNEIIANNGSIQDIERIPSDLKMLYKTVWEISQKVVLKMAADRGAFIDQSQSLNVH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+    K++SMHF+GW++GLKTGMYYLRTKPAANA+QFT+DK+K+ +A ++   +S   
Sbjct: 719 MAKPTTEKLTSMHFYGWQMGLKTGMYYLRTKPAANALQFTVDKSKLRSATSTPANQSLNL 778

Query: 571 IQADQEQAM----------------AAMICRRDNKEDCIG 594
              + E  M                A + C R+N + C+ 
Sbjct: 779 ESGNDEGYMNSSKKWLQDRSSEDIEAVLACSRENGDACMA 818



 Score =  338 bits (868), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 163/245 (66%), Positives = 191/245 (77%), Gaps = 16/245 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 573 LQYDMWNVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLLRDL E  LWD+NMK+++I NNGSIQDIE IP  LK LYKTVWE
Sbjct: 633 TRRVLSGEFQIVNPHLLRDLTERDLWDENMKNEIIANNGSIQDIERIPSDLKMLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VL MAADRGAFIDQSQSLN++MA+    K++SMHF+GW++GLKTGMYYLRTKPAA
Sbjct: 693 ISQKVVLKMAADRGAFIDQSQSLNVHMAKPTTEKLTSMHFYGWQMGLKTGMYYLRTKPAA 752

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAM----------------AAMICRRDN 992
           NA+QFT+DK+K+ +A ++   +S      + E  M                A + C R+N
Sbjct: 753 NALQFTVDKSKLRSATSTPANQSLNLESGNDEGYMNSSKKWLQDRSSEDIEAVLACSREN 812

Query: 993 KEDCL 997
            + C+
Sbjct: 813 GDACM 817



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+A   G Y+TYEGSPVS
Sbjct: 510 IGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCELAEEKGTYETYEGSPVS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDWAALK     +G++
Sbjct: 570 KGILQYDMWNVTPTDLWDWAALKEKIAKHGVR 601



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMC
Sbjct: 299 RPGAFAVYLEPWHADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLENGVWTLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL+D WG++F+ LY +YE E
Sbjct: 359 PHESPGLADVWGDEFETLYTRYENE 383



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI +LY++  +      P+IS+K+Y II  NA +LNSAIIYDRDF+YN+FGFK
Sbjct: 102 EVIHDLYHVQEQYLNKPRPVISEKYYNIIQNNASKLNSAIIYDRDFSYNYFGFK 155



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL +Q+ETGTPYMLYKD CNRKSNQQN+  I+
Sbjct: 395 LWTAILIAQVETGTPYMLYKDHCNRKSNQQNIGTIK 430


>gi|431919136|gb|ELK17888.1| Ribonucleoside-diphosphate reductase large subunit [Pteropus
           alecto]
          Length = 799

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/503 (70%), Positives = 423/503 (84%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ +WSLMC
Sbjct: 301 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQEWSLMC 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 361 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 420

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R+SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 421 RQSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFKKLAEVTK 479

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 480 VIVRNLNKIIDINYYPIPEAYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 539

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TY+GSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 540 FETIYYGALEASCDLAKEHGPYETYKGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 599

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 600 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 659

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MA +RGAFIDQSQSLNI+
Sbjct: 660 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAVERGAFIDQSQSLNIH 719

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +        
Sbjct: 720 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEE--- 776

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 777 ----KERNTAAMVCSLENRDECL 795



 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 184/229 (80%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 574 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 633

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 634 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 693

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MA +RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 694 ISQKTVLKMAVERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 753

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +            +E+  AAM+C  +N+++CL
Sbjct: 754 NPIQFTLNKEKLKDKEKASKEEE-------KERNTAAMVCSLENRDECL 795



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ +WSLMC
Sbjct: 301 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQEWSLMC 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 361 PNECPGLDEVWGEEFEKLYESYEKQGRV 388



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 499 AYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEH 558

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY+GSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 559 GPYETYKGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 602



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N      +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 104 DVMEDLYNYINPHNSKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 157



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNR+SNQQNL  I+
Sbjct: 387 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRQSNQQNLGTIK 432


>gi|62897131|dbj|BAD96506.1| ribonucleoside-diphosphate reductase M1 chain variant [Homo
           sapiens]
          Length = 792

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 420/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           F TIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FGTIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 VAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  325 bits (834), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIF TIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFGTIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 594



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|388454038|ref|NP_001252816.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
 gi|355566819|gb|EHH23198.1| Ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
 gi|355752416|gb|EHH56536.1| Ribonucleoside-diphosphate reductase large subunit [Macaca
           fascicularis]
 gi|380815414|gb|AFE79581.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
 gi|383420603|gb|AFH33515.1| ribonucleoside-diphosphate reductase large subunit [Macaca mulatta]
          Length = 792

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKE IAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKISKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 183/229 (79%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKE IAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKISKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKYGIR 594



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|402894484|ref|XP_003910386.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Papio anubis]
          Length = 711

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 272 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 331

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 332 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 390

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 391 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 450

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKE IAK+
Sbjct: 451 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKY 510

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 511 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 570

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 571 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 630

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 631 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 688

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 689 ----KERNTAAMVCSLENRDECL 707



 Score =  323 bits (827), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 183/229 (79%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKE IAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 485 LQYDMWNVTPTDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 544

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 545 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 604

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 605 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 664

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 665 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 707



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 272 PNECPGLDEVWGEEFEKLYESYEKQGRV 299



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 410 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 469

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 470 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKYGIR 513



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 298 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 343


>gi|194377918|dbj|BAG63322.1| unnamed protein product [Homo sapiens]
          Length = 570

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 420/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 71  RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 130

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI+ SQ ETGTPYMLYKD+CN
Sbjct: 131 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIGSQTETGTPYMLYKDSCN 190

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 191 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 249

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 250 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 309

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 310 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 369

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 370 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 429

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 430 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 489

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 490 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 547

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 548 ----KERNTAAMVCSLENRDECL 566



 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 344 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 403

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 404 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 463

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 464 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 523

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 524 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 566



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 269 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 328

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 329 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 372



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 71  RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 130

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 131 PNECPGLDEVWGEEFEKLYASYEKQGRV 158



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI+ SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 157 RVRKVVKAQQLWYAIIGSQTETGTPYMLYKDSCNRKSNQQNLGTIK 202


>gi|402894482|ref|XP_003910385.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Papio anubis]
          Length = 792

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKE IAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  322 bits (826), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 183/229 (79%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKE IAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWNLLKENIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKENIAKYGIR 594



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|343959472|dbj|BAK63593.1| ribonucleoside-diphosphate reductase large subunit [Pan
           troglodytes]
          Length = 570

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 71  RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 130

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 131 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 190

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 191 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 249

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 250 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 309

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 310 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 369

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 370 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 429

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 430 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 489

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 490 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 547

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 548 ----KERNTAAMVCSLENRDECL 566



 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 344 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 403

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 404 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 463

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 464 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 523

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 524 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 566



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 269 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 328

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 329 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 372



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 71  RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 130

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 131 PNECPGLDEVWGEEFEKLYASYEKQGRV 158



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 157 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 202


>gi|73988079|ref|XP_534027.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Canis lupus familiaris]
          Length = 792

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPT+LWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTELWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QK VL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKIVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKATKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788



 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTELWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKIVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKATKEEEE------KERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPT+LWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSRGILQYDMWNVTPTELWDWKLLKEKIAKYGVR 594



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|197100140|ref|NP_001126012.1| ribonucleoside-diphosphate reductase large subunit [Pongo abelii]
 gi|75041664|sp|Q5R919.1|RIR1_PONAB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase
           subunit M1; AltName: Full=Ribonucleotide reductase large
           subunit
 gi|55730032|emb|CAH91741.1| hypothetical protein [Pongo abelii]
          Length = 792

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCS+LCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  325 bits (832), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I       L+K+A    S     +V+E+LYN +N   G  +PM++    +I++
Sbjct: 74  YAILAARIAVSN---LHKEAKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVL 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
            N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 126 ANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|395814934|ref|XP_003780992.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Otolemur garnettii]
          Length = 792

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 422/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G   + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGHVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTE+VEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEVVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLNEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEKMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLTMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT+      N    KD     +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL------NKEKLKDKEKLSK 765

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 766 EEEEKERNTAAMVCSLENRDECL 788



 Score =  322 bits (824), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWNLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEKMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLTMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+      N    KD     + + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTL------NKEKLKDKEKLSKEEEEKERNTAAMVCSLENRDECL 788



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGHV 380



 Score =  147 bits (372), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWNLLKEKIAKYGIR 594



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+L+N +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLFNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 37/45 (82%)

Query: 676 VLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 380 VRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|326435406|gb|EGD80976.1| Rrm1 protein [Salpingoeca sp. ATCC 50818]
          Length = 779

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/503 (68%), Positives = 425/503 (84%), Gaps = 20/503 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELKKNTG EE RARDLF+ LW+PD FM+RVE++ +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANEEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD++G++F+ LY+KYEAEGK  ++V A KLWFAILD+Q ETGTPYMLYKDACN
Sbjct: 353 PHECPGLSDTYGDEFERLYEKYEAEGKGRKKVSASKLWFAILDAQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI  SNLCTEI+EY+S DEVAVCNL SIALN ++   DKT+++ KL +V K
Sbjct: 413 KKSNQKNLGTIHSSNLCTEIIEYSSPDEVAVCNLGSIALNKFV--GDKTFDYKKLHEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIID+N+YPV EAR SNMRHRPIGIGVQGLAD FI MRLPFD +E+R +N++I
Sbjct: 471 VLTRNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFILMRLPFDSDEAREVNRKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEAS EIA+ +GPY+T+EGSP S+GILQ+DMW V PTDLWDW +L+E++ K 
Sbjct: 531 FETIYHGALEASTEIASVEGPYETFEGSPTSEGILQFDMWDVKPTDLWDWESLRERVKKD 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSGEFQVVN HLL+DLVE+GLW
Sbjct: 591 GIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNKHLLKDLVEMGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D +KDQ+I+NNGSIQ IEGIP  +K LYKTVWE+ Q+T++DMAADRGAFIDQSQS N++
Sbjct: 651 SDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWELSQRTLIDMAADRGAFIDQSQSFNVH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +++ N+ K++SMHF+ WK GLKTGMYYLR++ A NAIQFT+D         +K AR  +E
Sbjct: 711 ISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAATNAIQFTVD---------AKKAREAKE 761

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
                    AAM+C  DN+++C+
Sbjct: 762 ---------AAMMCSIDNRDECV 775



 Score =  319 bits (817), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/229 (63%), Positives = 181/229 (79%), Gaps = 18/229 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V PTDLWDW +L+E++ K G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQFDMWDVKPTDLWDWESLRERVKKDGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN HLL+DLVE+GLW D +KDQ+I+NNGSIQ IEGIP  +K LYKTVWE
Sbjct: 625 SRRVLSGEFQVVNKHLLKDLVEMGLWSDEVKDQIILNNGSIQKIEGIPDDIKALYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + Q+T++DMAADRGAFIDQSQS N+++++ N+ K++SMHF+ WK GLKTGMYYLR++ A 
Sbjct: 685 LSQRTLIDMAADRGAFIDQSQSFNVHISDPNFGKLTSMHFYAWKRGLKTGMYYLRSRAAT 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+D  K                   +E   AAM+C  DN+++C+
Sbjct: 745 NAIQFTVDAKKA------------------REAKEAAMMCSIDNRDECV 775



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 77/86 (89%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELKKNTG EE RARDLF+ LW+PD FM+RVE++ +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADIFDFLELKKNTGVEEQRARDLFFALWVPDLFMKRVEANEEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD++G++F+ LY+KYEAEG
Sbjct: 353 PHECPGLSDTYGDEFERLYEKYEAEG 378



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 73/83 (87%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MRLPFD +E+R +N++IFETIY+GALEAS EIA+ +GPY+T+EGSP S
Sbjct: 502 IGVQGLADAFILMRLPFDSDEAREVNRKIFETIYHGALEASTEIASVEGPYETFEGSPTS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQ+DMW V PTDLWDW +L+
Sbjct: 562 EGILQFDMWDVKPTDLWDWESLR 584



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLWFAILD+Q ETGTPYMLYKDACN+KSNQ+NL  I 
Sbjct: 384 VSASKLWFAILDAQTETGTPYMLYKDACNKKSNQKNLGTIH 424



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L D  A +  A        +AIL ++I             ++ +++Q  +VI+ 
Sbjct: 50  GVTTVEL-DQLAAETAASFTTKHPDYAILAARIAVSN--------LHKMTHKQFSDVIDA 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L++ VN ETG   P+IS + YE +M N +  NS II++RDFN+NFFGFK
Sbjct: 101 LHHYVNPETGRPAPLISKETYEQVMANKEVYNSHIIFERDFNFNFFGFK 149


>gi|391328008|ref|XP_003738485.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Metaseiulus occidentalis]
          Length = 778

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/507 (68%), Positives = 421/507 (83%), Gaps = 21/507 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+L+KNTG EE RARDLFY LWIPD FM+RVE + +WSLMC
Sbjct: 293 RPGAFAIYLEPWHGDIFEFLDLRKNTGIEEMRARDLFYALWIPDLFMKRVEQNGKWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD+WG++F+ LY+ YE EG++IRQ+ A+KLW+ IL+SQIETGTPYMLYKDACN
Sbjct: 353 PNTCPGLSDTWGDEFEKLYEGYEKEGRYIRQIDAQKLWYTILESQIETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S DE+AVCNLAS+ALN +++  D  ++F +L++V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYSSPDEIAVCNLASVALNRFVH--DGAFDFERLREVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PFD  E+  LN +I
Sbjct: 471 AITRNLNKIIDINYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFDSPEAMDLNSKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A   G Y+TY G PVS+GILQ+DMW V P+DLWDW  L+ KIA+H
Sbjct: 531 FETIYFAALEASCELAEIHGTYETYAGCPVSKGILQHDMWNVKPSDLWDWDGLRRKIAQH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSN+Y+RRVLSGEFQ+VNHHLL+DL +LGLW
Sbjct: 591 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYARRVLSGEFQIVNHHLLKDLTDLGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK++L+ +NGS+Q+++ IP KLK LY+TVWE+PQK ++ MAADRGAFIDQSQSLNI+
Sbjct: 651 NETMKNELVASNGSVQNLD-IPDKLKQLYRTVWELPQKNIIKMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
            AE N+ K++SMHF+GWKLGLKTGMYYLRTKPAA AIQFT+DKTK+              
Sbjct: 710 FAETNFGKLTSMHFYGWKLGLKTGMYYLRTKPAAQAIQFTVDKTKI-------------- 755

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
               +++   AM+C   NK+ C+   G
Sbjct: 756 ----KQKNAEAMVCSLTNKDACLSCSG 778



 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 185/229 (80%), Gaps = 19/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW  L+ KIA+HG+RNSLL+APMPTASTAQILGNNES EPYTSN+Y
Sbjct: 565 LQHDMWNVKPSDLWDWDGLRRKIAQHGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VNHHLL+DL +LGLW++ MK++L+ +NGS+Q+++ IP KLK LY+TVWE
Sbjct: 625 ARRVLSGEFQIVNHHLLKDLTDLGLWNETMKNELVASNGSVQNLD-IPDKLKQLYRTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQK ++ MAADRGAFIDQSQSLNI+ AE N+ K++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 684 LPQKNIIKMAADRGAFIDQSQSLNIHFAETNFGKLTSMHFYGWKLGLKTGMYYLRTKPAA 743

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AIQFT+DKTK+                  +++   AM+C   NK+ CL
Sbjct: 744 QAIQFTVDKTKI------------------KQKNAEAMVCSLTNKDACL 774



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGDIF+FL+L+KNTG EE RARDLFY LWIPD FM+RVE + +WSLMC
Sbjct: 293 RPGAFAIYLEPWHGDIFEFLDLRKNTGIEEMRARDLFYALWIPDLFMKRVEQNGKWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD+WG++F+ LY+ YE EG
Sbjct: 353 PNTCPGLSDTWGDEFEKLYEGYEKEG 378



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PFD  E+  LN +IFETIY+ ALEASCE+A   G Y+TY G PVS
Sbjct: 502 IGVQGLADAFILMRYPFDSPEAMDLNSKIFETIYFAALEASCELAEIHGTYETYAGCPVS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW  L+     +G++
Sbjct: 562 KGILQHDMWNVKPSDLWDWDGLRRKIAQHGIR 593



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   E I  L  M N +TG   PMIS++ Y  +M N DRL+SAI+YDRDFNYN+F
Sbjct: 87  HKETKKHFSETIHILRTMSNGKTGKPMPMISEETYNFVMANKDRLDSAIVYDRDFNYNYF 146

Query: 768 GFK 770
           GF+
Sbjct: 147 GFR 149



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+ IL+SQIETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 388 KLWYTILESQIETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|296217190|ref|XP_002754897.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 3 [Callithrix jacchus]
          Length = 711

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE + +  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 272 PNECPGLDEVWGEEFEKLYESYEKQRRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 331

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 332 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFQKLAEVTK 390

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 391 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 450

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 451 FETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKY 510

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 511 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 570

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 571 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIH 630

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 631 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 688

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 689 ----KERNTAAMMCSLENRDECL 707



 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 485 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 544

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 545 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 604

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 605 ISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 664

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 665 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMMCSLENRDECL 707



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 410 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEH 469

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 470 GPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 513



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +  V
Sbjct: 272 PNECPGLDEVWGEEFEKLYESYEKQRRV 299



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 298 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 343


>gi|350414638|ref|XP_003490375.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Bombus impatiens]
          Length = 805

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/504 (68%), Positives = 419/504 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKN GKEE RAR+LFY LWIPD FM+RV  +  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVFDNGVWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F+ LY +YE E ++ RQ+ AR LW AIL SQ+ETGTPYMLYKD CN
Sbjct: 359 PHESPGLPDVWGDEFEALYTRYENEKRYKRQIQARDLWTAILVSQVETGTPYMLYKDHCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN QNLGTIK SNLCTEIV+Y+S DE+AVCNLASIA+NM++N +++T++F KL+ V K
Sbjct: 419 RKSNHQNLGTIKSSNLCTEIVQYSSPDEIAVCNLASIAVNMFVNSSNQTFDFEKLRKVTK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT NL+KIIDVN+YPV EA+ SN +HRPIGIG+QGLAD F+ MR PF+  E++ LN QI
Sbjct: 479 IVTCNLDKIIDVNYYPVHEAKTSNFKHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+AA  G Y+TYEGSPVS+GILQYDMW VTPT+LW+W  LKEKIAKH
Sbjct: 539 FETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMWNVTPTNLWNWTILKEKIAKH 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLRDL E  LW
Sbjct: 599 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYARRVLSGEFQVVNPHLLRDLTERDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++MK+++I NNGS+Q+IE IP  LK LYKTVWEIPQK +L MAADRGAFIDQSQS+N++
Sbjct: 659 DEDMKNEIIANNGSVQNIERIPNDLKMLYKTVWEIPQKVILKMAADRGAFIDQSQSMNVH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+    K++SMHF+GWK+GLKTGMYYLRTKPA NA+QFT+DK+K+ N +++   +S   
Sbjct: 719 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAVNALQFTVDKSKLRNTVSTTSNQSVNS 778

Query: 571 IQADQEQAMAAMICRRDNKEDCIG 594
             ++ E+ +    C R+N + C+ 
Sbjct: 779 ESSNDEKLIEVFACSRENGDACMA 802



 Score =  340 bits (871), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 154/229 (67%), Positives = 189/229 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LW+W  LKEKIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 573 LQYDMWNVTPTNLWNWTILKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLRDL E  LWD++MK+++I NNGS+Q+IE IP  LK LYKTVWE
Sbjct: 633 ARRVLSGEFQVVNPHLLRDLTERDLWDEDMKNEIIANNGSVQNIERIPNDLKMLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAFIDQSQS+N++MA+    K++SMHF+GWK+GLKTGMYYLRTKPA 
Sbjct: 693 IPQKVILKMAADRGAFIDQSQSMNVHMAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAV 752

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NA+QFT+DK+K+ N +++   +S     ++ E+ +    C R+N + C+
Sbjct: 753 NALQFTVDKSKLRNTVSTTSNQSVNSESSNDEKLIEVFACSRENGDACM 801



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKN GKEE RAR+LFY LWIPD FM+RV  +  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVFDNGVWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL D WG++F+ LY +YE E
Sbjct: 359 PHESPGLPDVWGDEFEALYTRYENE 383



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+AA  G Y+TYEGSPVS
Sbjct: 510 IGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCELAAEKGTYETYEGSPVS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPT+LW+W  LK     +G++
Sbjct: 570 KGILQYDMWNVTPTNLWNWTILKEKIAKHGVR 601



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  LYN+    T    P+IS+K+Y II  NA++LNSAIIYDRDF+YN+FGFK
Sbjct: 102 EVIHNLYNVKEHYTNEVRPVISEKYYNIIQNNANKLNSAIIYDRDFSYNYFGFK 155



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL SQ+ETGTPYMLYKD CNRKSN QNL  I+
Sbjct: 395 LWTAILVSQVETGTPYMLYKDHCNRKSNHQNLGTIK 430


>gi|391328010|ref|XP_003738486.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Metaseiulus occidentalis]
          Length = 783

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/507 (68%), Positives = 421/507 (83%), Gaps = 21/507 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWHGDIF+FL+L+KNTG EE RARDLFY LWIPD FM+RVE + +WSLMC
Sbjct: 298 RPGAFAIYLEPWHGDIFEFLDLRKNTGIEEMRARDLFYALWIPDLFMKRVEQNGKWSLMC 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD+WG++F+ LY+ YE EG++IRQ+ A+KLW+ IL+SQIETGTPYMLYKDACN
Sbjct: 358 PNTCPGLSDTWGDEFEKLYEGYEKEGRYIRQIDAQKLWYTILESQIETGTPYMLYKDACN 417

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY+S DE+AVCNLAS+ALN +++  D  ++F +L++V K
Sbjct: 418 RKSNQQNLGTIKCSNLCTEIVEYSSPDEIAVCNLASVALNRFVH--DGAFDFERLREVTK 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PFD  E+  LN +I
Sbjct: 476 AITRNLNKIIDINYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFDSPEAMDLNSKI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A   G Y+TY G PVS+GILQ+DMW V P+DLWDW  L+ KIA+H
Sbjct: 536 FETIYFAALEASCELAEIHGTYETYAGCPVSKGILQHDMWNVKPSDLWDWDGLRRKIAQH 595

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSN+Y+RRVLSGEFQ+VNHHLL+DL +LGLW
Sbjct: 596 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYARRVLSGEFQIVNHHLLKDLTDLGLW 655

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK++L+ +NGS+Q+++ IP KLK LY+TVWE+PQK ++ MAADRGAFIDQSQSLNI+
Sbjct: 656 NETMKNELVASNGSVQNLD-IPDKLKQLYRTVWELPQKNIIKMAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
            AE N+ K++SMHF+GWKLGLKTGMYYLRTKPAA AIQFT+DKTK+              
Sbjct: 715 FAETNFGKLTSMHFYGWKLGLKTGMYYLRTKPAAQAIQFTVDKTKI-------------- 760

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
               +++   AM+C   NK+ C+   G
Sbjct: 761 ----KQKNAEAMVCSLTNKDACLSCSG 783



 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/229 (64%), Positives = 185/229 (80%), Gaps = 19/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW  L+ KIA+HG+RNSLL+APMPTASTAQILGNNES EPYTSN+Y
Sbjct: 570 LQHDMWNVKPSDLWDWDGLRRKIAQHGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VNHHLL+DL +LGLW++ MK++L+ +NGS+Q+++ IP KLK LY+TVWE
Sbjct: 630 ARRVLSGEFQIVNHHLLKDLTDLGLWNETMKNELVASNGSVQNLD-IPDKLKQLYRTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQK ++ MAADRGAFIDQSQSLNI+ AE N+ K++SMHF+GWKLGLKTGMYYLRTKPAA
Sbjct: 689 LPQKNIIKMAADRGAFIDQSQSLNIHFAETNFGKLTSMHFYGWKLGLKTGMYYLRTKPAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AIQFT+DKTK+                  +++   AM+C   NK+ CL
Sbjct: 749 QAIQFTVDKTKI------------------KQKNAEAMVCSLTNKDACL 779



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/86 (74%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWHGDIF+FL+L+KNTG EE RARDLFY LWIPD FM+RVE + +WSLMC
Sbjct: 298 RPGAFAIYLEPWHGDIFEFLDLRKNTGIEEMRARDLFYALWIPDLFMKRVEQNGKWSLMC 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD+WG++F+ LY+ YE EG
Sbjct: 358 PNTCPGLSDTWGDEFEKLYEGYEKEG 383



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PFD  E+  LN +IFETIY+ ALEASCE+A   G Y+TY G PVS
Sbjct: 507 IGVQGLADAFILMRYPFDSPEAMDLNSKIFETIYFAALEASCELAEIHGTYETYAGCPVS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW  L+     +G++
Sbjct: 567 KGILQHDMWNVKPSDLWDWDGLRRKIAQHGIR 598



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 44/63 (69%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   E I  L  M N +TG   PMIS++ Y  +M N DRL+SAI+YDRDFNYN+F
Sbjct: 92  HKETKKHFSETIHILRTMSNGKTGKPMPMISEETYNFVMANKDRLDSAIVYDRDFNYNYF 151

Query: 768 GFK 770
           GF+
Sbjct: 152 GFR 154



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+ IL+SQIETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 393 KLWYTILESQIETGTPYMLYKDACNRKSNQQNLGTIK 429


>gi|296217186|ref|XP_002754895.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Callithrix jacchus]
          Length = 792

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE + +  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQRRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFQKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLRMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMMCSLENRDECL 788



 Score =  324 bits (830), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLRMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMMCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +  V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQRRV 380



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|221125331|ref|XP_002156185.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Hydra magnipapillata]
          Length = 821

 Score =  757 bits (1954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/522 (66%), Positives = 431/522 (82%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIYLEPWH DI DFL+LKKNTGKEE RARDLF+GLW+PD FMRRVE    WSLMC
Sbjct: 310 RPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMC 369

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +GE+F++LY+KYE+EG++ +Q+PA+KLWFAIL+SQ ETGTPYMLYKD+CN
Sbjct: 370 PHECPGLADCYGEEFEELYQKYESEGRYRKQIPAQKLWFAILESQTETGTPYMLYKDSCN 429

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN--------PADKT--- 259
           RKSNQ+NLGT+KCSNLCTEI+EYTS DE+AVCNLASI++N ++         P+ +T   
Sbjct: 430 RKSNQKNLGTLKCSNLCTEILEYTSSDEIAVCNLASISVNSFVTVNSETVTLPSGETKLV 489

Query: 260 ----YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
               Y+F KLK V K++T+NLNK+ID NFYPV EARNSNMRHRPIGIGVQGLAD FI MR
Sbjct: 490 KTGVYDFKKLKYVTKVITRNLNKVIDRNFYPVPEARNSNMRHRPIGIGVQGLADAFILMR 549

Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 375
            PF+ +E+ LLNKQIFETIYYGALEASCE+A +DG Y++Y+GSP+S+GILQYDMW VTPT
Sbjct: 550 FPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPISKGILQYDMWNVTPT 609

Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
           +LW+WA LK KIA HGVRNSLL+APMPTASTAQILGNNES EPYT+NIYSRRVLSGEFQV
Sbjct: 610 NLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIYSRRVLSGEFQV 669

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN HL++DL +L LWDDNMK+ LI +NGS+Q+I+ IP  +K LYKT WEI QK++++MAA
Sbjct: 670 VNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWEIKQKSLINMAA 729

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           DRGAFIDQSQS N+++ E +++ ++++HF+GWK GLKTGMYYLRTKPAANAIQFT+D+ K
Sbjct: 730 DRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAANAIQFTVDQNK 789

Query: 556 MANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
           +  +   K        Q D +  + ++IC  +NK+ C+   G
Sbjct: 790 LKQSNNLK--------QTDDD--LKSLICSLENKDQCMSCSG 821



 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/229 (62%), Positives = 184/229 (80%), Gaps = 10/229 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LW+WA LK KIA HGVRNSLL+APMPTASTAQILGNNES EPYT+NIY
Sbjct: 599 LQYDMWNVTPTNLWNWAELKAKIALHGVRNSLLVAPMPTASTAQILGNNESIEPYTNNIY 658

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN HL++DL +L LWDDNMK+ LI +NGS+Q+I+ IP  +K LYKT WE
Sbjct: 659 SRRVLSGEFQVVNKHLMKDLTDLNLWDDNMKNTLIAHNGSVQNIDEIPADIKVLYKTAWE 718

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK++++MAADRGAFIDQSQS N+++ E +++ ++++HF+GWK GLKTGMYYLRTKPAA
Sbjct: 719 IKQKSLINMAADRGAFIDQSQSFNVFLGEPSFSTLTAIHFYGWKKGLKTGMYYLRTKPAA 778

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           NAIQFT+D+ K+  +   K T          +  + ++IC  +NK+ C+
Sbjct: 779 NAIQFTVDQNKLKQSNNLKQT----------DDDLKSLICSLENKDQCM 817



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIYLEPWH DI DFL+LKKNTGKEE RARDLF+GLW+PD FMRRVE    WSLMC
Sbjct: 310 RPGSIAIYLEPWHADIIDFLDLKKNTGKEEQRARDLFFGLWVPDLFMRRVEEKGMWSLMC 369

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +GE+F++LY+KYE+EG
Sbjct: 370 PHECPGLADCYGEEFEELYQKYESEG 395



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 79/92 (85%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+ +E+ LLNKQIFETIYYGALEASCE+A +DG Y++Y+GSP+S
Sbjct: 536 IGVQGLADAFILMRFPFESDEASLLNKQIFETIYYGALEASCELAEKDGTYESYQGSPIS 595

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPT+LW+WA LK    ++G++
Sbjct: 596 KGILQYDMWNVTPTNLWNWAELKAKIALHGVR 627



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL+SQ ETGTPYMLYKD+CNRKSNQ+NL  ++
Sbjct: 405 KLWFAILESQTETGTPYMLYKDSCNRKSNQKNLGTLK 441



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           G+T  +L D  A +V A +      +A+L ++I       L+K+   + S     + I +
Sbjct: 67  GITTVEL-DTLAAEVAASMTTKHPDYALLAARIAISN---LHKETKKKFS-----DTIAD 117

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN ++ E     PM+S++ Y+I+ KN +RL+ AII  RDF Y++FGFK
Sbjct: 118 LYNYISPEINMNCPMVSEEVYQIVQKNKERLDGAIISSRDFEYHYFGFK 166


>gi|340375670|ref|XP_003386357.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Amphimedon queenslandica]
          Length = 794

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/507 (69%), Positives = 419/507 (82%), Gaps = 9/507 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DI  FL+L+KN GKEE RARDLFY LW PD FMRRVESD  WSLMC
Sbjct: 297 RPGAFAIYIEPWHADIIGFLDLRKNHGKEEQRARDLFYALWTPDLFMRRVESDGMWSLMC 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL ++WG++FD LY+KYEAEG+    + A+KLWFAIL+SQIETGTPYMLYKDACN
Sbjct: 357 PDECPGLYETWGDEFDQLYEKYEAEGRARTVIRAQKLWFAILESQIETGTPYMLYKDACN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLCTEIVEYTS DEVAVCNLASIAL  ++  ++  ++F +L +V K
Sbjct: 417 RKSNQKNLGTIQCSNLCTEIVEYTSPDEVAVCNLASIALPRFV--SEGQFDFQRLFEVTK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN+IID+N+YPV EAR SN+RHRPIGIGVQGLAD FI MR  FDC E++ LN+ I
Sbjct: 475 VITRNLNRIIDINYYPVPEARTSNLRHRPIGIGVQGLADTFILMRYSFDCEEAQELNRMI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY AL ASCE+A  +G Y+TY GSPVSQGILQYDMW VTP+DLWDW ALKE+IAK+
Sbjct: 535 FETIYYAALTASCELAGEEGVYETYHGSPVSQGILQYDMWDVTPSDLWDWKALKEQIAKY 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSGEFQ+VN HL+RDL E GLW
Sbjct: 595 GIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQIVNSHLMRDLSERGLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK +LI +NGS+Q+I  IP +LK LYKTVWEI QKT+++MAADRGA+IDQSQS NI+
Sbjct: 655 NDDMKQRLIKDNGSVQNIPEIPDELKVLYKTVWEISQKTLINMAADRGAYIDQSQSFNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           M E N+ KM+SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D+T + +A    D   +EE
Sbjct: 715 MGETNFGKMTSMHFYGWKKGLKTGMYYLRTRAAAQAIQFTVDQTVIKSASTKSDEMKKEE 774

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
               QE+   AMIC   NKE CI    
Sbjct: 775 ----QEE---AMICSLKNKEACISCSA 794



 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 189/229 (82%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP+DLWDW ALKE+IAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 569 LQYDMWDVTPSDLWDWKALKEQIAKYGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN HL+RDL E GLW+D+MK +LI +NGS+Q+I  IP +LK LYKTVWE
Sbjct: 629 SRRVLSGEFQIVNSHLMRDLSERGLWNDDMKQRLIKDNGSVQNIPEIPDELKVLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADRGA+IDQSQS NI+M E N+ KM+SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKTLINMAADRGAYIDQSQSFNIHMGETNFGKMTSMHFYGWKKGLKTGMYYLRTRAAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AIQFT+D+T     + S  T+S E  + +QE+   AMIC   NKE C+
Sbjct: 749 QAIQFTVDQT----VIKSASTKSDEMKKEEQEE---AMICSLKNKEACI 790



 Score =  149 bits (376), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DI  FL+L+KN GKEE RARDLFY LW PD FMRRVESD  WSLMC
Sbjct: 297 RPGAFAIYIEPWHADIIGFLDLRKNHGKEEQRARDLFYALWTPDLFMRRVESDGMWSLMC 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL ++WG++FD LY+KYEAEG
Sbjct: 357 PDECPGLYETWGDEFDQLYEKYEAEG 382



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR  FDC E++ LN+ IFETIYY AL ASCE+A  +G Y+TY GSPVS
Sbjct: 506 IGVQGLADTFILMRYSFDCEEAQELNRMIFETIYYAALTASCELAGEEGVYETYHGSPVS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTP+DLWDW ALK     YG++
Sbjct: 566 QGILQYDMWDVTPSDLWDWKALKEQIAKYGIR 597



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 658 YDMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           Y+ WG     L++   A  +   ++   KLWFAIL+SQIETGTPYMLYKDACNRKSNQ+N
Sbjct: 364 YETWGDEFDQLYEKYEAEGRARTVIRAQKLWFAILESQIETGTPYMLYKDACNRKSNQKN 423

Query: 716 LEVIE 720
           L  I+
Sbjct: 424 LGTIQ 428



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 42/53 (79%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++LY+ VN + G   PMIS +  +II  NAD+LNSAI+Y+RD++Y++FGFK
Sbjct: 101 VMQDLYDYVNPKNGRHCPMISAETNKIIQDNADKLNSAILYNRDYDYSYFGFK 153


>gi|148224574|ref|NP_001084312.1| ribonucleotide reductase M1 [Xenopus laevis]
 gi|49256098|gb|AAH74185.1| RRM1 protein [Xenopus laevis]
          Length = 797

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/503 (69%), Positives = 427/503 (84%), Gaps = 2/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+R E++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG+KF++LY+KYE EG+  + V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREGRTRKVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS  EVAVCNLAS+ALNMY+ P +++++F KL DV K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTP-ERSFDFKKLADVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++NFYPV EA  SN +HRPIGIGVQGLAD FI MR PF+  ++++LNKQI
Sbjct: 472 VIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY+TYEG PVS+GILQYDMW VTPTDLWDW ALKEKIAK+
Sbjct: 532 FETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTPTDLWDWTALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HL++DL E GLW
Sbjct: 592 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWEI QKTV+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+          + E+
Sbjct: 712 VAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKEKELIT-METTEK 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 771 DKEEKEKNKAAMVCSLENRDECL 793



 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 192/229 (83%), Gaps = 1/229 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HL++DL E GLW++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+ MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+          + E+ + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKEKELIT-METTEKDKEEKEKNKAAMVCSLENRDECL 793



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+R E++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRAENNLDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WG+KF++LY+KYE EG
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREG 378



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  ++++LNKQIFETIYY ALE+SCE+A   GPY+TYEG PVS
Sbjct: 503 IGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW ALK     YG++
Sbjct: 563 KGILQYDMWNVTPTDLWDWTALKEKIAKYGIR 594



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PM+S +  +I++ N DRLNS+IIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|395521330|ref|XP_003764771.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Sarcophilus harrisii]
          Length = 911

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/503 (70%), Positives = 422/503 (83%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 413 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 472

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 473 PNECPGLDDVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 532

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNM++   + T++F KL +V K
Sbjct: 533 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVT-LEHTFDFQKLAEVTK 591

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 592 VIVRNLNKIININYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 651

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 652 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWNVLKEKIAKY 711

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 712 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 771

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 772 NEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 831

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+              
Sbjct: 832 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKEKEKVLK------ 885

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
              ++E+  AAM+C  +N+++C+
Sbjct: 886 -DEEKERNTAAMVCSLENRDECL 907



 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 686 LQYDMWNVTPTDLWDWNVLKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 745

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWE
Sbjct: 746 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWE 805

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 806 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 865

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+                 ++E+  AAM+C  +N+++CL
Sbjct: 866 NPIQFTLNKEKLKEKEKVLK-------DEEKERNTAAMVCSLENRDECL 907



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 413 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 472

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL D WGE+F+ LY+ YE +G V
Sbjct: 473 PNECPGLDDVWGEEFEKLYESYEKQGRV 500



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 611 ASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEY 670

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 671 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWNVLKEKIAKYGIR 714



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A +  A +      +AIL ++I             +++
Sbjct: 159 ITMKVIQGLYSGVTTVEL-DTLAAETSATLTTKHPDYAILAARIAVSN--------LHKE 209

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 210 TKKVFSDVMEDLYNYINPFNGRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 269



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG     L++      +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL
Sbjct: 481 DVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 540

Query: 717 EVIE 720
             I+
Sbjct: 541 GTIK 544


>gi|194389080|dbj|BAG61557.1| unnamed protein product [Homo sapiens]
          Length = 683

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/468 (75%), Positives = 405/468 (86%), Gaps = 1/468 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 272 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 331

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 332 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 390

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 391 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 450

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 451 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 510

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 511 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 570

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 571 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 630

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +
Sbjct: 631 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKD 678



 Score =  318 bits (814), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 168/194 (86%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 485 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 544

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 545 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 604

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 605 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 664

Query: 949 NAIQFTIDKTKMAN 962
           N IQFT++K K+ +
Sbjct: 665 NPIQFTLNKEKLKD 678



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 410 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 469

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 470 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 513



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 212 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 271

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 272 PNECPGLDEVWGEEFEKLYASYEKQGRV 299



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 298 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 343


>gi|370988472|dbj|BAL43552.1| ribonucleotide reductase M1 [Xenopus laevis]
          Length = 797

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/503 (69%), Positives = 427/503 (84%), Gaps = 2/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG+KF++LY+KYE EG+  + V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREGRTRKVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSN CTEIVEYTS  EVAVCNLAS+ALNMY+ P +++++F KL DV K
Sbjct: 413 RKSNQQNLGTIKCSNQCTEIVEYTSDKEVAVCNLASLALNMYVTP-ERSFDFKKLADVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++NFYPV EA  SN +HRPIGIGVQGLAD FI MR PF+  ++++LNKQI
Sbjct: 472 VIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY+TYEG PVS+GILQYDMW VTPTDLWDW ALKEKIAK+
Sbjct: 532 FETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTPTDLWDWTALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HL++DL E GLW
Sbjct: 592 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWEI QKTV+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+          + E+
Sbjct: 712 VAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKEKELIT-METTEK 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 771 DKEEKEKNKAAMVCSLENRDECL 793



 Score =  329 bits (844), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 192/229 (83%), Gaps = 1/229 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HL++DL E GLW++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+ MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+          + E+ + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKEKELIT-METTEKDKEEKEKNKAAMVCSLENRDECL 793



 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/164 (46%), Positives = 99/164 (60%), Gaps = 17/164 (10%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           P+ C GL + WG+KF++LY+KYE EG    R        + WH      +E +  TG   
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREG----RTRKVVKAQQVWHA----IIESQTETGTP- 403

Query: 121 FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEK 164
                  Y L+  D   R+       ++ C N C  + +   +K
Sbjct: 404 -------YMLY-KDACNRKSNQQNLGTIKCSNQCTEIVEYTSDK 439



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  ++++LNKQIFETIYY ALE+SCE+A   GPY+TYEG PVS
Sbjct: 503 IGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW ALK     YG++
Sbjct: 563 KGILQYDMWNVTPTDLWDWTALKEKIAKYGIR 594



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PM+S +  +I++ N DRLNS+IIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNSKHSPMVSKETLDIVLANKDRLNSSIIYDRDFSYNFFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMIS 738
           +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+      + +        S
Sbjct: 383 VVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK-----CSNQCTEIVEYTS 437

Query: 739 DKHYEIIMKNADRLNSAIIYDRDFNY 764
           DK   +    +  LN  +  +R F++
Sbjct: 438 DKEVAVCNLASLALNMYVTPERSFDF 463


>gi|196012349|ref|XP_002116037.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
 gi|190581360|gb|EDV21437.1| hypothetical protein TRIADDRAFT_50804 [Trichoplax adhaerens]
          Length = 780

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/507 (69%), Positives = 420/507 (82%), Gaps = 19/507 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFL+LKKNTGKEE RARDLFY +W+PD FM+RVE +  WSLMC
Sbjct: 293 RPGAFAIYLEPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D++GE+F+ LY +YE  GKFIRQV A+KLWFAIL++Q+ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLHDTYGEEFEKLYTEYEDAGKFIRQVRAQKLWFAILEAQVETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  ++ P DKT++F KL +V K
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPRFVRP-DKTFDFHKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIID+NFYPV EA  SN RHRPIGIGVQGLAD FI MR PFD  E+R LN +I
Sbjct: 472 VITRNLNKIIDINFYPVPEAEKSNKRHRPIGIGVQGLADAFILMRFPFDGPEARDLNIKI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE+IYYGAL+ASCE+A   GPY+TYEGSP SQG LQ+D+W   PTDLW+W +LKE I K+
Sbjct: 532 FESIYYGALQASCELAKEVGPYETYEGSPASQGQLQFDLWEKQPTDLWNWNSLKEDIKKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSGEFQVVN HLL+DL ++G+W
Sbjct: 592 GLRNSLLLAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGEFQVVNQHLLKDLTDMGVW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK++LI NNGSIQ I  IP  +K LYKTVWEI Q+T++DMAADRGA+IDQSQS N++
Sbjct: 652 NDMMKNELIANNGSIQKINNIPDDIKALYKTVWEISQRTLIDMAADRGAYIDQSQSFNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE N+AK++SMHF+ WK GLKTGMYYLRTKPAA+AIQFT+DK               E+
Sbjct: 712 IAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAASAIQFTVDK---------------EK 756

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
           +Q D+E   +AM+C  +NKE C+   G
Sbjct: 757 LQKDRE---SAMVCSLENKEACLMCSG 780



 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 184/229 (80%), Gaps = 18/229 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PTDLW+W +LKE I K+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQFDLWEKQPTDLWNWNSLKEDIKKYGLRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN HLL+DL ++G+W+D MK++LI NNGSIQ I  IP  +K LYKTVWE
Sbjct: 626 SRRVLSGEFQVVNQHLLKDLTDMGVWNDMMKNELIANNGSIQKINNIPDDIKALYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQS N+++AE N+AK++SMHF+ WK GLKTGMYYLRTKPAA
Sbjct: 686 ISQRTLIDMAADRGAYIDQSQSFNVHIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTKPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AIQFT+DK               E++Q D+E   +AM+C  +NKE CL
Sbjct: 746 SAIQFTVDK---------------EKLQKDRE---SAMVCSLENKEACL 776



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFL+LKKNTGKEE RARDLFY +W+PD FM+RVE +  WSLMC
Sbjct: 293 RPGAFAIYLEPWHPDIFDFLDLKKNTGKEEQRARDLFYAMWMPDLFMKRVEENGVWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D++GE+F+ LY +YE  G
Sbjct: 353 PNDCPGLHDTYGEEFEKLYTEYEDAG 378



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PFD  E+R LN +IFE+IYYGAL+ASCE+A   GPY+TYEGSP S
Sbjct: 503 IGVQGLADAFILMRFPFDGPEARDLNIKIFESIYYGALQASCELAKEVGPYETYEGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+W   PTDLW+W +LK     YGL+
Sbjct: 563 QGQLQFDLWEKQPTDLWNWNSLKEDIKKYGLR 594



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V++ELYN VN + G  +PMIS + +EII K+ +RLNSAIIYDRD+NYNFFGFK
Sbjct: 97  VMDELYNYVNPKNGKHSPMISKETHEIITKHCERLNSAIIYDRDYNYNFFGFK 149



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 673 ALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A K +  V   KLWFAIL++Q+ETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 377 AGKFIRQVRAQKLWFAILEAQVETGTPYMLYKDACNRKSNQKNLGTIK 424


>gi|444731474|gb|ELW71827.1| Ribonucleoside-diphosphate reductase large subunit [Tupaia
           chinensis]
          Length = 792

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/503 (70%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+KYE +G+  + V A++LW+AI++SQ ETGTPYMLYK +CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYEKYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKASCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R +NQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RTNNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK+KIAK+
Sbjct: 532 FETIYYGALEASCDLAKEYGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKDKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +  
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKTSKEEEE-- 769

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788



 Score =  325 bits (832), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK+KIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKDKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKTSKEEEE------KERNTAAMVCSLENRDECL 788



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+KYE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYEKYEKQGRV 380



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 AYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKDKIAKYGVR 594



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYK +CNR +NQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKASCNRTNNQQNLGTIK 424


>gi|149634836|ref|XP_001505371.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Ornithorhynchus anatinus]
          Length = 792

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/503 (70%), Positives = 423/503 (84%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS+DEVAVCNLAS+ALNM++   + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSRDEVAVCNLASLALNMFVT-LEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN+QI
Sbjct: 472 VIVRNLNKIIDINYYPIPEASTSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNQQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGAL+ASC++A   GPY+TY+GSPVS+GILQYDMW VTPTDLWDW ALKEKIAK+
Sbjct: 532 FETIYYGALDASCDLAKDHGPYETYQGSPVSKGILQYDMWNVTPTDLWDWKALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT+      N    K+     +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL------NKEKLKEKEKATK 765

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+E+C+
Sbjct: 766 EEEEKERNTAAMVCSLENREECL 788



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALKEKIAK+GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+      N    K+     + + ++E+  AAM+C  +N+E+CL
Sbjct: 746 NPIQFTL------NKEKLKEKEKATKEEEEKERNTAAMVCSLENREECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNRDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 77/92 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLN+QIFETIYYGAL+ASC++A   GPY+TY+GSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESPEAQLLNQQIFETIYYGALDASCDLAKDHGPYETYQGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW ALK     YG++
Sbjct: 563 KGILQYDMWNVTPTDLWDWKALKEKIAKYGVR 594



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYVNPHNGKHSPMVAKTTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|403262126|ref|XP_003923446.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Saimiri boliviensis boliviensis]
          Length = 792

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE + +  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQRRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFQKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT+      N    KD     +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL------NKEKIKDKEKISK 765

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 766 EEEEKERNTAAMVCSLENRDECL 788



 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+      N    KD     + + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTL------NKEKIKDKEKISKEEEEKERNTAAMVCSLENRDECL 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEH 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +  V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQRRV 380



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|403262128|ref|XP_003923447.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 2 [Saimiri boliviensis boliviensis]
          Length = 695

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE + +  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 256 PNECPGLDEVWGEEFEKLYESYEKQRRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 315

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 316 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFQKLAEVTK 374

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 375 VIVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 434

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 435 FETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 494

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 495 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 554

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 555 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 614

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT+      N    KD     +
Sbjct: 615 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTL------NKEKIKDKEKISK 668

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 669 EEEEKERNTAAMVCSLENRDECL 691



 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 469 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 528

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 529 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 588

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 589 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 648

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT+      N    KD     + + ++E+  AAM+C  +N+++CL
Sbjct: 649 NPIQFTL------NKEKIKDKEKISKEEEEKERNTAAMVCSLENRDECL 691



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 394 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEH 453

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 454 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 497



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/88 (70%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 196 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 255

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +  V
Sbjct: 256 PNECPGLDEVWGEEFEKLYESYEKQRRV 283



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 1   MEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 52



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 282 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 327


>gi|340715220|ref|XP_003396116.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Bombus terrestris]
          Length = 821

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/520 (67%), Positives = 421/520 (80%), Gaps = 16/520 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKN GKEE RAR+LFY LWIPD FM+RV  +  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVLDNGVWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F+ LY +YE E ++ RQ+ AR LW AIL SQ+ETGTPYMLYKD CN
Sbjct: 359 PHESPGLPDVWGDEFEALYTRYETEKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN QNLGTIK SNLCTEIV+Y+S DE+AVCNLASIA+NM++N +++T++F KL+ V K
Sbjct: 419 RKSNHQNLGTIKSSNLCTEIVQYSSPDEIAVCNLASIAVNMFVNSSNQTFDFEKLRKVTK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT NL+KIIDVN+YPV EA+ SN +HRPIGIG+QGLAD F+ MR PF+  E++ LN QI
Sbjct: 479 IVTCNLDKIIDVNYYPVPEAKTSNFKHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+AA  G Y+TYEGSPVS+GILQYDMW VTPTDLW+W  LKEKIAKH
Sbjct: 539 FETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMWNVTPTDLWNWTILKEKIAKH 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLRDL E  LW
Sbjct: 599 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYARRVLSGEFQVVNPHLLRDLTERDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+NMK+++I NNGS+Q+IE IP  LK LYKTVWEIPQK +L MAADRGAFIDQSQS+N++
Sbjct: 659 DENMKNEIIANNGSVQNIERIPNDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSMNVH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS--- 567
           MA+    K++SMHF+GWK+GLKTGMYYLRTKPA NA+QFT+DK+K+ N +++   +S   
Sbjct: 719 MAKPTAEKLTSMHFYGWKMGLKTGMYYLRTKPAVNALQFTVDKSKLQNTISTTSNQSVNS 778

Query: 568 ----QEEIQADQ---------EQAMAAMICRRDNKEDCIG 594
                EE+ + +         E   A   C R+N + C+ 
Sbjct: 779 ECNNDEELNSTENKWLQNQSSENIEAVFACSRENGDACMA 818



 Score =  335 bits (860), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 159/245 (64%), Positives = 191/245 (77%), Gaps = 16/245 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLW+W  LKEKIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 573 LQYDMWNVTPTDLWNWTILKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLRDL E  LWD+NMK+++I NNGS+Q+IE IP  LK LYKTVWE
Sbjct: 633 ARRVLSGEFQVVNPHLLRDLTERDLWDENMKNEIIANNGSVQNIERIPNDLKMLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAFIDQSQS+N++MA+    K++SMHF+GWK+GLKTGMYYLRTKPA 
Sbjct: 693 IPQKIILKMAADRGAFIDQSQSMNVHMAKPTAEKLTSMHFYGWKMGLKTGMYYLRTKPAV 752

Query: 949 NAIQFTIDKTKMANAMASKDTRS-------QEEIQADQ---------EQAMAAMICRRDN 992
           NA+QFT+DK+K+ N +++   +S        EE+ + +         E   A   C R+N
Sbjct: 753 NALQFTVDKSKLQNTISTTSNQSVNSECNNDEELNSTENKWLQNQSSENIEAVFACSREN 812

Query: 993 KEDCL 997
            + C+
Sbjct: 813 GDACM 817



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+AA  G Y+TYEGSPVS
Sbjct: 510 IGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCELAAEKGTYETYEGSPVS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLW+W  LK     +G++
Sbjct: 570 KGILQYDMWNVTPTDLWNWTILKEKIAKHGVR 601



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKN GKEE RAR+LFY LWIPD FM+RV  +  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNIGKEENRARELFYALWIPDLFMKRVLDNGVWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL D WG++F+ LY +YE E
Sbjct: 359 PHESPGLPDVWGDEFEALYTRYETE 383



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  LYN+    T    P+I++K+Y II  NA++LNSAIIYDRDF+YN+FGFK
Sbjct: 102 EVIHSLYNVKEHYTNEVRPVINEKYYNIIQNNANKLNSAIIYDRDFSYNYFGFK 155



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL SQ+ETGTPYMLYKD CNRKSN QNL  I+
Sbjct: 395 LWTAILISQVETGTPYMLYKDHCNRKSNHQNLGTIK 430


>gi|443684165|gb|ELT88174.1| hypothetical protein CAPTEDRAFT_228855 [Capitella teleta]
          Length = 790

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/507 (69%), Positives = 419/507 (82%), Gaps = 9/507 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+ +KNTGKEE RARDLFY LWIPD FM+RVE +  WSLMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDCRKNTGKEEQRARDLFYALWIPDLFMKRVEQNGDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD WGE+F+ LY+KYE EG+  + + A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PHESPGLSDVWGEEFEALYEKYEKEGRVRKTIKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEY++ DEVAVCNLASIALN ++  +DKT++F KL +V  
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYSAPDEVAVCNLASIALNRFVK-SDKTFDFDKLIEVTG 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIIDVNFYPV EAR SNMRHRPIGIGVQGLAD FI MR PFD  E++ LN+ I
Sbjct: 472 VIVRNLNKIIDVNFYPVPEARKSNMRHRPIGIGVQGLADTFILMRFPFDSPEAQKLNRDI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGAL+ SC++A  +G YQTY G PVS+GILQ+DMW V   D  DW  L+  I KH
Sbjct: 532 FETIYYGALKMSCQLAQEEGAYQTYAGCPVSKGILQHDMWDVK-ADRHDWDGLRADIKKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVNHHLL+DL E GLW
Sbjct: 591 GVRNSLLMAPMPTASTAQILGNNESTEPYTSNIYTRRVLSGEFQVVNHHLLKDLTENGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+++I +NGSIQ+IEGIP  LK LYKTVWEI QK VL+MAA+RGAFIDQSQSLNI+
Sbjct: 651 NDDMKNRMISSNGSIQEIEGIPDDLKALYKTVWEIKQKVVLNMAAERGAFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY +++SMHF+ WKLGLKTGMYYLRTKPAA AIQFT+DK+K+     + +++  EE
Sbjct: 711 IAEPNYGRLTSMHFYAWKLGLKTGMYYLRTKPAAQAIQFTVDKSKLKKKTPTGESKKSEE 770

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
                   MAAM+C  DNK++CI   G
Sbjct: 771 -------NMAAMVCSLDNKDECIMCSG 790



 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 154/229 (67%), Positives = 186/229 (81%), Gaps = 8/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V   D  DW  L+  I KHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQHDMWDVK-ADRHDWDGLRADIKKHGVRNSLLMAPMPTASTAQILGNNESTEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLL+DL E GLW+D+MK+++I +NGSIQ+IEGIP  LK LYKTVWE
Sbjct: 625 TRRVLSGEFQVVNHHLLKDLTENGLWNDDMKNRMISSNGSIQEIEGIPDDLKALYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VL+MAA+RGAFIDQSQSLNI++AE NY +++SMHF+ WKLGLKTGMYYLRTKPAA
Sbjct: 685 IKQKVVLNMAAERGAFIDQSQSLNIHIAEPNYGRLTSMHFYAWKLGLKTGMYYLRTKPAA 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AIQFT+DK+K+     + +++  EE        MAAM+C  DNK++C+
Sbjct: 745 QAIQFTVDKSKLKKKTPTGESKKSEE-------NMAAMVCSLDNKDECI 786



 Score =  149 bits (376), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+ +KNTGKEE RARDLFY LWIPD FM+RVE +  WSLMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDCRKNTGKEEQRARDLFYALWIPDLFMKRVEQNGDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+   GLSD WGE+F+ LY+KYE EG V
Sbjct: 353 PHESPGLSDVWGEEFEALYEKYEKEGRV 380



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PFD  E++ LN+ IFETIYYGAL+ SC++A  +G YQTY G PVS
Sbjct: 503 IGVQGLADTFILMRFPFDSPEAQKLNRDIFETIYYGALKMSCQLAQEEGAYQTYAGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V   D  DW  L+     +G++
Sbjct: 563 KGILQHDMWDVK-ADRHDWDGLRADIKKHGVR 593



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +LY  VN +    +PMIS +  +I+ +NADRLNSAIIYDRD++YN+FGFK
Sbjct: 96  EVMNDLYTYVNPKNDIHSPMISKELLDIVTENADRLNSAIIYDRDYSYNYFGFK 149



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG     L++      +V   +   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL
Sbjct: 361 DVWGEEFEALYEKYEKEGRVRKTIKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|116283230|gb|AAH03299.1| Rrm1 protein [Mus musculus]
          Length = 762

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/462 (75%), Positives = 402/462 (87%), Gaps = 1/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753



 Score =  311 bits (798), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 164/188 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTID 956
           N IQFT++
Sbjct: 746 NPIQFTLN 753



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK     YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIR 594



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|351702964|gb|EHB05883.1| Ribonucleoside-diphosphate reductase large subunit, partial
           [Heterocephalus glaber]
          Length = 787

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/504 (70%), Positives = 422/504 (83%), Gaps = 8/504 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 287 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD-AC 209
           PN C GL + WGE+F+ LY+ YE +G+  R V A++LW+AI++SQ ETGTPYMLYKD + 
Sbjct: 347 PNECPGLDEVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDYSY 406

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           N+KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V 
Sbjct: 407 NQKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVT 465

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           K++ +NLNKIID+N+YP+ EA  SN  HRPIGIGVQGLAD FI MR PF+  E++LLNKQ
Sbjct: 466 KVIVRNLNKIIDINYYPIPEAHLSNKCHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQ 525

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK
Sbjct: 526 IFETIYYGALEASCDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAK 585

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GL
Sbjct: 586 YGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGL 645

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI
Sbjct: 646 WNEEMKNQIIACNGSIQSILEIPDDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSLNI 705

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     + 
Sbjct: 706 HIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE- 764

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
                +E+  AAM+C  +N+++C+
Sbjct: 765 -----KERNTAAMVCSLENRDECL 783



 Score =  327 bits (837), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 186/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 561 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 621 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSILEIPDDLKQLYKTVWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 681 ISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 740

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 741 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 783



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 287 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 347 PNECPGLDEVWGEEFEKLYESYEKQGRV 374



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS
Sbjct: 498 IGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYETYEGSPVS 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 558 KGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 589



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 90  DVMEDLYNYINPHNGRHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 143



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKD-ACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD + N+KSNQQNL  I+
Sbjct: 373 RVRRVVKAQQLWYAIIESQTETGTPYMLYKDYSYNQKSNQQNLGTIK 419


>gi|341877710|gb|EGT33645.1| CBN-RNR-1 protein [Caenorhabditis brenneri]
          Length = 786

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/494 (69%), Positives = 413/494 (83%), Gaps = 8/494 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+F+ L+KNTG EE RARDLF  LW+PD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADVFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WGE+F+ LY +YEAEG+F + V ARKLW  I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFEKLYTRYEAEGRFRKVVKARKLWEHIVSNQIETGLPYITYKDAAN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEI+EY++ DE+AVCNLASIALN ++ P +KT++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRFVTP-EKTFDFKKLAEVTK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLNKIIDVN+YPVEEARNSNMRHRPIG+GVQGLAD F+ MR PF    +R LNK+I
Sbjct: 478 VITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRFPFTSEGARDLNKRI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A +DGPY TY+GSPVS+G LQ+DMWGVTPTD  +W AL++KIAKH
Sbjct: 538 FETIYYAALEASCELAEKDGPYSTYQGSPVSKGQLQFDMWGVTPTDQCNWNALRQKIAKH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK++LI NNGSIQ+I GIP  +K+LY+TVWEI QK +++MAADRGAFIDQSQSLNI+
Sbjct: 658 SDEMKNRLIANNGSIQNIPGIPDDIKELYRTVWEISQKEIIEMAADRGAFIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK+ +          S++E
Sbjct: 718 MAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKSALKTP-------SKQE 770

Query: 571 IQADQEQAMAAMIC 584
           +  ++ Q    ++C
Sbjct: 771 VAKEEPQDEGCVMC 784



 Score =  321 bits (823), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 184/220 (83%), Gaps = 7/220 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPTD  +W AL++KIAKHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 572 LQFDMWGVTPTDQCNWNALRQKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSG+FQ+VN H+L+DLVE GLW D MK++LI NNGSIQ+I GIP  +K+LY+TVWE
Sbjct: 632 SRRVLSGDFQIVNPHMLKDLVERGLWSDEMKNRLIANNGSIQNIPGIPDDIKELYRTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADRGAFIDQSQSLNI+MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA 
Sbjct: 692 ISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAV 751

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           NA+QFT+DK+ +        T S++E+  ++ Q    ++C
Sbjct: 752 NAVQFTVDKSAL-------KTPSKQEVAKEEPQDEGCVMC 784



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+F+ L+KNTG EE RARDLF  LW+PD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADVFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL D WGE+F+ LY +YEAEG
Sbjct: 359 PCECPGLDDCWGEEFEKLYTRYEAEG 384



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF    +R LNK+IFETIYY ALEASCE+A +DGPY TY+GSPVS
Sbjct: 509 LGVQGLADCFMLMRFPFTSEGARDLNKRIFETIYYAALEASCELAEKDGPYSTYQGSPVS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+DMWGVTPTD  +W AL+     +G++
Sbjct: 569 KGQLQFDMWGVTPTDQCNWNALRQKIAKHGVR 600



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A +      +A+L ++I             ++K+N+   EV+  
Sbjct: 56  GVTTVELDNLAA-ETAASMTTQHPEYALLAARIAVSN--------LHKKTNKVFSEVMRT 106

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+N  +  TG   PMISD+ + II KNAD+LNSAI+YDRD++Y +FGFK
Sbjct: 107 LHNFHHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFK 155



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+    A  +   +V   KLW  I+ +QIETG PY+ YKDA NRKSNQQNL
Sbjct: 367 DCWGEEFEKLYTRYEAEGRFRKVVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNL 426

Query: 717 EVIE 720
             I+
Sbjct: 427 GTIK 430


>gi|28422346|gb|AAH46846.1| RRM1 protein, partial [Xenopus laevis]
          Length = 760

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/462 (73%), Positives = 405/462 (87%), Gaps = 1/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG+KF++LY+KYE EG+  + V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREGRTRKVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS  EVAVCNLAS+ALNMY+ P +++++F KL DV K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSDKEVAVCNLASLALNMYVTP-ERSFDFKKLADVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++NFYPV EA  SN +HRPIGIGVQGLAD FI MR PF+  ++++LNKQI
Sbjct: 472 VIVRNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFESEKAQMLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY+TYEG PVS+GILQYDMW VTPTDLWDW ALKEKIAK+
Sbjct: 532 FETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTPTDLWDWTALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HL++DL E GLW
Sbjct: 592 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWEI QKTV+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++
Sbjct: 712 VAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLN 753



 Score =  318 bits (816), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 145/188 (77%), Positives = 169/188 (89%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HL++DL E GLW++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+ MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTID 956
           N IQFT++
Sbjct: 746 NPIQFTLN 753



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WG+KF++LY+KYE EG
Sbjct: 353 PHECPGLEEVWGDKFEELYEKYEREG 378



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  ++++LNKQIFETIYY ALE+SCE+A   GPY+TYEG PVS
Sbjct: 503 IGVQGLADAFILMRYPFESEKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW ALK     YG++
Sbjct: 563 KGILQYDMWNVTPTDLWDWTALKEKIAKYGIR 594



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN      +PM+S +  +I++ N DRLNS+IIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNSKHSPMVSRETLDIVLANKDRLNSSIIYDRDFSYNFFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|187608195|ref|NP_001120566.1| ribonucleotide reductase M1 [Xenopus (Silurana) tropicalis]
 gi|171847253|gb|AAI61529.1| LOC100145720 protein [Xenopus (Silurana) tropicalis]
          Length = 797

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/503 (70%), Positives = 429/503 (85%), Gaps = 2/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG+KF++LY++YE EG+  + V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PHECPGLEEVWGDKFEELYERYEREGRARKVVKAQQLWYAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS DEVAVCNLAS+ALNMY+ P +++++F KL DV K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSDDEVAVCNLASLALNMYVTP-ERSFDFKKLADVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKII++NFYPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIEINFYPVPEAEYSNKRHRPIGIGVQGLADAFILMRYPFESEEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY TYEGSPVS+GILQYDMW VTPT LWDWAALKEKIAK+
Sbjct: 532 FETIYYAALESSCELAKELGPYDTYEGSPVSKGILQYDMWNVTPTGLWDWAALKEKIAKY 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HL++DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWEI QKTV+ MAADRGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIANNGSIQNVPDIPADLKELYKTVWEISQKTVITMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF GWK GLKTGMYYLRT+PAAN IQFT++K K+          + E+
Sbjct: 712 VAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKEKELI-SKETMEK 770

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            + ++E+  AAM+C  +N+++C+
Sbjct: 771 DKEEKEKNKAAMVCSLENRDECL 793



 Score =  328 bits (841), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 191/229 (83%), Gaps = 1/229 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT LWDWAALKEKIAK+GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTGLWDWAALKEKIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HL++DL E GLW++ MK+Q+I NNGSIQ++  IP  LK+LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLMKDLTERGLWNEEMKNQIIANNGSIQNVPDIPADLKELYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+ MAADRGAFIDQSQSLNI++AE NY K++SMHF GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVITMAADRGAFIDQSQSLNIHVAEPNYGKLTSMHFFGWKQGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+          + E+ + ++E+  AAM+C  +N+++CL
Sbjct: 746 NPIQFTLNKEKLKEKELI-SKETMEKDKEEKEKNKAAMVCSLENRDECL 793



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++LLNKQIFETIYY ALE+SCE+A   GPY TYEGSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESEEAQLLNKQIFETIYYAALESSCELAKELGPYDTYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPT LWDWAALK     YG++
Sbjct: 563 KGILQYDMWNVTPTGLWDWAALKEKIAKYGVR 594



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 65/75 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHYDVFEFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 352

Query: 61  PNACRGLSDSWGEKF 75
           P+ C GL + WG+KF
Sbjct: 353 PHECPGLEEVWGDKF 367



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN VN   G  +PM+S +  ++++ N DRLNS+IIYDRDF+YNFFGFK
Sbjct: 96  DVMEDLYNYVNPLNGKHSPMVSKETLDLVLANKDRLNSSIIYDRDFSYNFFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LW+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|308501413|ref|XP_003112891.1| CRE-RNR-1 protein [Caenorhabditis remanei]
 gi|308265192|gb|EFP09145.1| CRE-RNR-1 protein [Caenorhabditis remanei]
          Length = 786

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/494 (70%), Positives = 409/494 (82%), Gaps = 8/494 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+F+ L+KNTG EE RARDLF  LWIPD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQNWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WGE+F+ LY KYEAEG+  + V ARKLW  I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAAN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEI+EY++ DE+AVCNLASIALN Y+ P +K ++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIMEYSAPDEIAVCNLASIALNRYVTP-EKKFDFKKLAEVTK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLNKIIDVN+YPVEEARNSNMRHRPIG+GVQGLAD F+ MR PF   ++R LNK+I
Sbjct: 478 VITKNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSKQARDLNKRI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A RDGPY TYEGSPVS+G LQ+DMWGVTPTD  DWAAL++KIA H
Sbjct: 538 FETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWAALRKKIATH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK++LI NNGSIQ+I  IP  +K+LY TVWEI QK +++MAADRGAFIDQSQSLNI+
Sbjct: 658 TDEMKNRLIANNGSIQNIPEIPADIKELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK  +        A+   +
Sbjct: 718 MAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAVNAVQFTVDKGAL-------KAKVDPK 770

Query: 571 IQADQEQAMAAMIC 584
           + A Q+Q    ++C
Sbjct: 771 VAALQQQDEGCLMC 784



 Score =  313 bits (802), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 147/220 (66%), Positives = 179/220 (81%), Gaps = 7/220 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPTD  DWAAL++KIA HG+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 572 LQFDMWGVTPTDQCDWAALRKKIATHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSG+FQ+VN H+L+DLVE GLW D MK++LI NNGSIQ+I  IP  +K+LY TVWE
Sbjct: 632 SRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPEIPADIKELYLTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADRGAFIDQSQSLNI+MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA 
Sbjct: 692 ISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKQGLKTGMYYLRTKPAV 751

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           NA+QFT+DK  +   +  K       + A Q+Q    ++C
Sbjct: 752 NAVQFTVDKGALKAKVDPK-------VAALQQQDEGCLMC 784



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 70/88 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+F+ L+KNTG EE RARDLF  LWIPD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADVFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQNWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P  C GL D WGE+F+ LY KYEAEG V
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRV 386



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF   ++R LNK+IFETIYY ALEASCE+A RDGPY TYEGSPVS
Sbjct: 509 LGVQGLADCFMLMRYPFTSKQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+DMWGVTPTD  DWAAL+     +G++
Sbjct: 569 KGQLQFDMWGVTPTDQCDWAALRKKIATHGIR 600



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A +      +A+L ++I             ++K+N+   EV++ 
Sbjct: 56  GVTTVELDNLAA-ETAASMTTQHPEYALLAARIAVSN--------LHKKTNKVFSEVMKT 106

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+   +  TG   PMISD+ + II KNAD+LNSAI+YDRD++Y +FGFK
Sbjct: 107 LHEFHHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFK 155



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   V   KLW  I+ +QIETG PY+ YKDA NRKSNQQNL  I+
Sbjct: 385 RVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIK 430


>gi|17555242|ref|NP_499039.1| Protein RNR-1 [Caenorhabditis elegans]
 gi|417657|sp|Q03604.1|RIR1_CAEEL RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|3880121|emb|CAA79574.1| Protein RNR-1 [Caenorhabditis elegans]
          Length = 788

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/484 (71%), Positives = 408/484 (84%), Gaps = 5/484 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF  LWIPD FM+RVE D +WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WGE+F+ LY KYEAEG+  + V ARKLW  I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAAN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEI+EY++ DE+AVCNLASIALN Y+ P +K ++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTP-EKKFDFVKLAEVTK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIIDVN+YPVEEARNSNMRHRPIG+GVQGLAD F+ MR PF   E+R LNK+I
Sbjct: 478 VITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A  +GPY TYEGSPVS+G LQ+DMWGVTPTD  DWA L++KIAKH
Sbjct: 538 FETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWATLRKKIAKH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK++LI NNGSIQ+I+GIP  +K+LY+TVWEI QK +++MAADRGA+IDQSQSLNI+
Sbjct: 658 TDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD----AR 566
           MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK  +     ++     A 
Sbjct: 718 MAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQAETPATVAE 777

Query: 567 SQEE 570
           SQ+E
Sbjct: 778 SQDE 781



 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 172/192 (89%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPTD  DWA L++KIAKHG+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 572 LQFDMWGVTPTDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSG+FQ+VN H+L+DLVE GLW D MK++LI NNGSIQ+I+GIP  +K+LY+TVWE
Sbjct: 632 SRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADRGA+IDQSQSLNI+MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA 
Sbjct: 692 ISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAV 751

Query: 949 NAIQFTIDKTKM 960
           NA+QFT+DK  +
Sbjct: 752 NAVQFTVDKNAL 763



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 71/88 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF  LWIPD FM+RVE D +WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P  C GL D WGE+F+ LY KYEAEG V
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRV 386



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF   E+R LNK+IFETIYY ALEASCE+A  +GPY TYEGSPVS
Sbjct: 509 LGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+DMWGVTPTD  DWA L+     +G++
Sbjct: 569 KGQLQFDMWGVTPTDQCDWATLRKKIAKHGIR 600



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A +      +A+L ++I             ++K+N+   EV++ 
Sbjct: 56  GVTTVELDNLAA-ETAASMTTQHPEYALLAARIAVSN--------LHKKTNKVFSEVMKT 106

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+   +  TG   PMISD+ + II KNAD+LNSAI+YDRD++Y +FGFK
Sbjct: 107 LHEFHHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFK 155



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 32/46 (69%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   V   KLW  I+ +QIETG PY+ YKDA NRKSNQQNL  I+
Sbjct: 385 RVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIK 430


>gi|339251084|ref|XP_003373025.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
 gi|316969123|gb|EFV53282.1| ribonucleoside-diphosphate reductase large subunit [Trichinella
           spiralis]
          Length = 833

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/466 (71%), Positives = 406/466 (87%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFL+ KKNTG EE RARDLFY LWIPD FM+R+E+D  WSLMC
Sbjct: 312 RPGAFAVYLEPWHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMC 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D WG++F+ LY+KYEA+GK  R++ A++LW+AI++SQIETGTP+M+YKDACN
Sbjct: 372 PHECPGLADLWGDEFEKLYEKYEAQGKHKRRIKAQQLWYAIIESQIETGTPFMVYKDACN 431

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIV+Y+S DE +VCNLASIALN ++N A + ++F KL +V K
Sbjct: 432 RKSNQQNLGTIKCSNLCTEIVQYSSPDETSVCNLASIALNKFVNVAKREFDFAKLAEVTK 491

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLNKIID N+YPV  A  SN RHRPIGIGVQGLAD FI MR PF+  E+RLLNK+I
Sbjct: 492 VVTVNLNKIIDRNYYPVAVAEKSNKRHRPIGIGVQGLADAFILMRYPFESEEARLLNKKI 551

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SC++A + GPY+TY+GSP S+GILQYDMW V PTDLWDW +LK +I K+
Sbjct: 552 FETIYYAALESSCDLAKQFGPYETYQGSPASKGILQYDMWNVQPTDLWDWESLKCRIEKY 611

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES E YTSN+Y+RRVLSGEFQ+VNHHL++DLVELGLW
Sbjct: 612 GLRNSLLLAPMPTASTAQILGNNESVEAYTSNVYTRRVLSGEFQIVNHHLMKDLVELGLW 671

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+++K+++I N GSIQ IE IP ++++LYKTVWEI QK V+DMAA+RGAFIDQSQSLNI+
Sbjct: 672 DESLKNEIIANKGSIQSIESIPAEIRELYKTVWEISQKCVIDMAAERGAFIDQSQSLNIH 731

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +AE NYAK++SMHF+GWK GLKTGMYYLRTKPA  AIQFT+DK  +
Sbjct: 732 IAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAVTAIQFTVDKLAL 777



 Score =  315 bits (806), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 141/192 (73%), Positives = 171/192 (89%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW +LK +I K+G+RNSLL+APMPTASTAQILGNNES E YTSN+Y
Sbjct: 586 LQYDMWNVQPTDLWDWESLKCRIEKYGLRNSLLLAPMPTASTAQILGNNESVEAYTSNVY 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VNHHL++DLVELGLWD+++K+++I N GSIQ IE IP ++++LYKTVWE
Sbjct: 646 TRRVLSGEFQIVNHHLMKDLVELGLWDESLKNEIIANKGSIQSIESIPAEIRELYKTVWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+DMAA+RGAFIDQSQSLNI++AE NYAK++SMHF+GWK GLKTGMYYLRTKPA 
Sbjct: 706 ISQKCVIDMAAERGAFIDQSQSLNIHIAEPNYAKLTSMHFYGWKKGLKTGMYYLRTKPAV 765

Query: 949 NAIQFTIDKTKM 960
            AIQFT+DK  +
Sbjct: 766 TAIQFTVDKLAL 777



 Score =  150 bits (380), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFL+ KKNTG EE RARDLFY LWIPD FM+R+E+D  WSLMC
Sbjct: 312 RPGAFAVYLEPWHADIFDFLDAKKNTGVEENRARDLFYALWIPDLFMKRIEADGDWSLMC 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D WG++F+ LY+KYEA+G
Sbjct: 372 PHECPGLADLWGDEFEKLYEKYEAQG 397



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E+RLLNK+IFETIYY ALE+SC++A + GPY+TY+GSP S
Sbjct: 523 IGVQGLADAFILMRYPFESEEARLLNKKIFETIYYAALESSCDLAKQFGPYETYQGSPAS 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PTDLWDW +LK     YGL+
Sbjct: 583 KGILQYDMWNVQPTDLWDWESLKCRIEKYGLR 614



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     GVT  +L + AA ++ A +      +A L ++I             +++
Sbjct: 58  ISQKVIAGLYQGVTTVELDNLAA-EISATMTTKHPDYATLAARIAVSN--------LHKE 108

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +VI++LY  +N  T   +PMIS K ++II  N+ RLNS I+YDRDF+Y++FGFK
Sbjct: 109 TKKVFSDVIDDLYQWINPNTNKHSPMISPKVHQIIQANSQRLNSTIVYDRDFSYSYFGFK 168



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG     L++   A  K    +   +LW+AI++SQIETGTP+M+YKDACNRKSNQQNL
Sbjct: 380 DLWGDEFEKLYEKYEAQGKHKRRIKAQQLWYAIIESQIETGTPFMVYKDACNRKSNQQNL 439

Query: 717 EVIE 720
             I+
Sbjct: 440 GTIK 443


>gi|195456500|ref|XP_002075166.1| GK23355 [Drosophila willistoni]
 gi|194171251|gb|EDW86152.1| GK23355 [Drosophila willistoni]
          Length = 768

 Score =  744 bits (1921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/480 (70%), Positives = 410/480 (85%), Gaps = 1/480 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LK+NTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 287 RPGAFAIYLEPWHSDIFEFLDLKRNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG+KF++LY KYE EG   R V A+ LWFAI++SQ+ETG PYML+KD+CN
Sbjct: 347 PHKCPGLEDVWGDKFEELYVKYEKEGLANRIVKAQSLWFAIIESQVETGNPYMLFKDSCN 406

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQN+GTIKCSNLCTE+VEY++ DE+AVCNLASIALNM++   DKTY+F KLK+V K
Sbjct: 407 KKSNQQNVGTIKCSNLCTEVVEYSAPDEIAVCNLASIALNMFVT-TDKTYDFKKLKEVTK 465

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV KNLNKIIDVN+YP+ EA+ SN++HRPIGIGVQGLAD  I MRLP++  ++ LLN+QI
Sbjct: 466 IVAKNLNKIIDVNYYPLPEAKKSNLKHRPIGIGVQGLADALILMRLPYESKQACLLNQQI 525

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEASCE+A   GPY+T++GSP S+GILQYDMW   P+DLWDW  LK  I +H
Sbjct: 526 FETIYFGALEASCELAQMYGPYETFKGSPASRGILQYDMWNKKPSDLWDWNKLKAAIKEH 585

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 586 GIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 645

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK++++ + GSIQ+IE IPQ ++DLYKTVWEI  K+ + MAADRGAFIDQSQS NI+
Sbjct: 646 DDDMKNKIVSSRGSIQNIEVIPQNVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 705

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++S+HF+ WK GLKTGMYYLRTKPAA+AIQFT+DK   A  ++S++   + E
Sbjct: 706 VAEPNYGKLTSIHFYSWKSGLKTGMYYLRTKPAAHAIQFTVDKNASATIISSQNGSIKAE 765



 Score =  312 bits (799), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 173/206 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   P+DLWDW  LK  I +HG+RNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 560 LQYDMWNKKPSDLWDWNKLKAAIKEHGIRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 619

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVNHHLLRDL EL LWDD+MK++++ + GSIQ+IE IPQ ++DLYKTVWE
Sbjct: 620 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNKIVSSRGSIQNIEVIPQNVRDLYKTVWE 679

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 680 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKSGLKTGMYYLRTKPAA 739

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEE 974
           +AIQFT+DK   A  ++S++   + E
Sbjct: 740 HAIQFTVDKNASATIISSQNGSIKAE 765



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/87 (74%), Positives = 75/87 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LK+NTGKEE RARDLFY LWIPD FM+RVE++  WSLMC
Sbjct: 287 RPGAFAIYLEPWHSDIFEFLDLKRNTGKEEHRARDLFYALWIPDLFMKRVEANEDWSLMC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ C GL D WG+KF++LY KYE EGL
Sbjct: 347 PHKCPGLEDVWGDKFEELYVKYEKEGL 373



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD  I MRLP++  ++ LLN+QIFETIY+GALEASCE+A   GPY+T++GSP S
Sbjct: 497 IGVQGLADALILMRLPYESKQACLLNQQIFETIYFGALEASCELAQMYGPYETFKGSPAS 556

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   P+DLWDW  LK     +G++
Sbjct: 557 RGILQYDMWNKKPSDLWDWNKLKAAIKEHGIR 588



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV EELY+ VNKET   +PM+S  HY I+  NADRLNSA+IYDRDF YN+FGFK
Sbjct: 90  EVFEELYHHVNKETNNPSPMVSSYHYNIVKNNADRLNSAMIYDRDFGYNYFGFK 143



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG    +L+     + LA  +V    LWFAI++SQ+ETG PYML+KD+CN+KSNQQN+
Sbjct: 355 DVWGDKFEELYVKYEKEGLANRIVKAQSLWFAIIESQVETGNPYMLFKDSCNKKSNQQNV 414

Query: 717 EVIE 720
             I+
Sbjct: 415 GTIK 418


>gi|72084113|ref|XP_780425.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           isoform 1 [Strongylocentrotus purpuratus]
          Length = 797

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/503 (68%), Positives = 416/503 (82%), Gaps = 5/503 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFL+ KKN GKEE RARDLFYGLWIPD FM+RVE+D  W+LMC
Sbjct: 296 RPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WGE+F+ LY+ YE  G+  + + A+ LW+AI++SQ ETGTPYM+YKD CN
Sbjct: 356 PHESPGLHEVWGEEFETLYEGYEKAGRGRKTIKAQALWYAIIESQTETGTPYMVYKDHCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEIVEY+S DEVAVCNLASIAL  ++   D+T++F KL++V  
Sbjct: 416 KKSNQQNLGTIKCSNLCTEIVEYSSADEVAVCNLASIALPRFVQ--DRTFDFKKLEEVTM 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIID+N+YPV EA+ SN RHRPIGIGVQGLAD FI MR PF+  E++ LN QI
Sbjct: 474 VITENLNKIIDINYYPVPEAKRSNFRHRPIGIGVQGLADAFILMRFPFESVEAKKLNIQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY AL+ASC+IAA+ GPY+TY+GSPVS+GILQ DMWGVTPTDL DWA+LK  IAKH
Sbjct: 534 FETIYYAALKASCKIAAKLGPYETYKGSPVSKGILQQDMWGVTPTDLHDWASLKADIAKH 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNE+ EPYTSNIY+RRVLSGEFQVVNHHLLRDL ++GLW
Sbjct: 594 GVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRRVLSGEFQVVNHHLLRDLTDMGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+ LI NNGSIQ+I  IP  +K LYKTVWEI QKT++ MA DRGA+IDQSQSLNI+
Sbjct: 654 SDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQKTIIQMAVDRGAYIDQSQSLNIH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF  WK GLKTGMYYLRT+PAA+ I+FT+DK  +     +K   ++E+
Sbjct: 714 IAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPIKFTLDKLSLKEKSGAKLTEAEEK 773

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            +A  E   AAM+C  +NK+ C+
Sbjct: 774 ERAKNE---AAMMCSLENKDACV 793



 Score =  329 bits (844), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 155/226 (68%), Positives = 185/226 (81%), Gaps = 3/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTPTDL DWA+LK  IAKHGVRNSLL+APMPTASTAQILGNNE+ EPYTSNIY+RR
Sbjct: 571 DMWGVTPTDLHDWASLKADIAKHGVRNSLLLAPMPTASTAQILGNNEAIEPYTSNIYTRR 630

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEFQVVNHHLLRDL ++GLW D MK+ LI NNGSIQ+I  IP  +K LYKTVWEI Q
Sbjct: 631 VLSGEFQVVNHHLLRDLTDMGLWSDEMKNNLIANNGSIQNIPTIPDDIKALYKTVWEISQ 690

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++ MA DRGA+IDQSQSLNI++AE NY K++SMHF  WK GLKTGMYYLRT+PAA+ I
Sbjct: 691 KTIIQMAVDRGAYIDQSQSLNIHIAEPNYGKLTSMHFFAWKSGLKTGMYYLRTRPAADPI 750

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+DK  +     +K T ++E+ +A  E   AAM+C  +NK+ C+
Sbjct: 751 KFTLDKLSLKEKSGAKLTEAEEKERAKNE---AAMMCSLENKDACV 793



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFL+ KKN GKEE RARDLFYGLWIPD FM+RVE+D  W+LMC
Sbjct: 296 RPGAFAIYLEPWHADIFDFLDCKKNHGKEEQRARDLFYGLWIPDLFMKRVEADGDWTLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WGE+F+ LY+ YE  G
Sbjct: 356 PHESPGLHEVWGEEFETLYEGYEKAG 381



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E++ LN QIFETIYY AL+ASC+IAA+ GPY+TY+GSPVS
Sbjct: 505 IGVQGLADAFILMRFPFESVEAKKLNIQIFETIYYAALKASCKIAAKLGPYETYKGSPVS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGVTPTDL DWA+LK     +G++
Sbjct: 565 KGILQQDMWGVTPTDLHDWASLKADIAKHGVR 596



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++L+   N   G  +P+IS++   II  NADRLNSA++YDRDF YN+FGFK
Sbjct: 100 VMKDLFEYTNPRNGLHSPLISEETMMIINDNADRLNSAVLYDRDFEYNYFGFK 152



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW+AI++SQ ETGTPYM+YKD CN+KSNQQNL  I+
Sbjct: 392 LWYAIIESQTETGTPYMVYKDHCNKKSNQQNLGTIK 427


>gi|332023837|gb|EGI64061.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 854

 Score =  742 bits (1916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/529 (65%), Positives = 414/529 (78%), Gaps = 25/529 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFLELK+N G    RARDLFYGLWIPD FM RV +D  WSLMC
Sbjct: 323 RPGAFAIYLEPWHADIFDFLELKRNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMC 382

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD WG++F +LY +YE EG++ +QV AR +W AIL SQ+ETGTPYMLYKD CN
Sbjct: 383 PHESPGLSDVWGDEFKELYTRYEKEGRYKKQVEARSVWLAILRSQVETGTPYMLYKDHCN 442

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN Q++GT+KCSNLCTEI+EY+   EVAVCNLASIA+NM++N   K ++F KLK VAK
Sbjct: 443 RKSNHQHIGTVKCSNLCTEIIEYSGPGEVAVCNLASIAVNMFVNIDTKIFDFDKLKTVAK 502

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NL+K+IDVNFYP+EE R SN RHRPIGIG+QGLAD F+ MR PF+  E++ LN +I
Sbjct: 503 IVTRNLDKVIDVNFYPIEETRTSNHRHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKI 562

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+AA  G Y+TY+GSPVS+GILQYDMW V PT+LWDW  LK KIAKH
Sbjct: 563 FETLYYGALEASCELAAEKGTYETYQGSPVSKGILQYDMWNVKPTNLWDWDELKAKIAKH 622

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY RRVLSGEF +VN HLLRDL   GLW
Sbjct: 623 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFIIVNPHLLRDLTSRGLW 682

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++MK++++ N GS+Q+IE IP  LK+LYKTVWEIPQK +L+MAADRGAF+DQSQSLN++
Sbjct: 683 DEDMKNEILANFGSVQNIERIPDDLKELYKTVWEIPQKVILEMAADRGAFVDQSQSLNVH 742

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-------------- 556
           + +    K++SMHF GWK GLKTGMYYLRTKPAAN IQFT+DK+K+              
Sbjct: 743 IGDPTTEKLTSMHFFGWKSGLKTGMYYLRTKPAANPIQFTVDKSKLQNRDSVSNVSDAST 802

Query: 557 ----------ANAMASKDARSQEEIQADQEQAMAAMI-CRRDNKEDCIG 594
                      N  +  DA  ++++     + + AM+ C R NKEDC+ 
Sbjct: 803 SVVNSTPIQSPNQDSDDDAEKRKQLSTQARKNLDAMLACSRKNKEDCMA 851



 Score =  317 bits (811), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 185/254 (72%), Gaps = 25/254 (9%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT+LWDW  LK KIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 597 LQYDMWNVKPTNLWDWDELKAKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 656

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF +VN HLLRDL   GLWD++MK++++ N GS+Q+IE IP  LK+LYKTVWE
Sbjct: 657 VRRVLSGEFIIVNPHLLRDLTSRGLWDEDMKNEILANFGSVQNIERIPDDLKELYKTVWE 716

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L+MAADRGAF+DQSQSLN+++ +    K++SMHF GWK GLKTGMYYLRTKPAA
Sbjct: 717 IPQKVILEMAADRGAFVDQSQSLNVHIGDPTTEKLTSMHFFGWKSGLKTGMYYLRTKPAA 776

Query: 949 NAIQFTIDKTKM------------------------ANAMASKDTRSQEEIQADQEQAMA 984
           N IQFT+DK+K+                         N  +  D   ++++     + + 
Sbjct: 777 NPIQFTVDKSKLQNRDSVSNVSDASTSVVNSTPIQSPNQDSDDDAEKRKQLSTQARKNLD 836

Query: 985 AMI-CRRDNKEDCL 997
           AM+ C R NKEDC+
Sbjct: 837 AMLACSRKNKEDCM 850



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFLELK+N G    RARDLFYGLWIPD FM RV +D  WSLMC
Sbjct: 323 RPGAFAIYLEPWHADIFDFLELKRNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMC 382

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD WG++F +LY +YE EG
Sbjct: 383 PHESPGLSDVWGDEFKELYTRYEKEG 408



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN +IFET+YYGALEASCE+AA  G Y+TY+GSPVS
Sbjct: 534 IGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYETYQGSPVS 593

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PT+LWDW  LK     +G++
Sbjct: 594 KGILQYDMWNVKPTNLWDWDELKAKIAKHGVR 625



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I+            ++++ +   EV+ +L+   N  T    P+IS  +Y II 
Sbjct: 105 YAILAARIDVSN--------LHKETKKSFSEVMHDLHYAKNPVTNHYNPIISKHYYNIIK 156

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
            NA++L+SAIIYDRDFNYN+ GFK
Sbjct: 157 NNAEKLDSAIIYDRDFNYNYIGFK 180



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    +W AIL SQ+ETGTPYMLYKD CNRKSN Q++  ++
Sbjct: 414 VEARSVWLAILRSQVETGTPYMLYKDHCNRKSNHQHIGTVK 454


>gi|320167592|gb|EFW44491.1| ribonucleotide reductase M1 subunit [Capsaspora owczarzaki ATCC
           30864]
          Length = 785

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/508 (66%), Positives = 419/508 (82%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLF+ LWIPD FM+RVE+D  WSLMC
Sbjct: 293 RPGAFAMYLEPWHADVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL +++G+KF++LY +YE EGK  + + A+KLWFAIL+SQ E+GTPYMLYKDACN
Sbjct: 353 PHECPGLEETYGDKFEELYTRYEREGKARKVIKAQKLWFAILESQTESGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEY+S DEVAVCNLAS++L M++  +D+TY+F KL ++ +
Sbjct: 413 IKSNQKNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLSLPMFVR-SDRTYDFKKLHEITQ 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLN+IID+N+YPV EA  SNMRHRPIG+GVQGLAD FIQMR+PFD  +++ LN++I
Sbjct: 472 VVTKNLNRIIDINYYPVPEAEKSNMRHRPIGLGVQGLADAFIQMRVPFDSEDAKKLNREI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+ AL AS E+A + GPY+TY GSPVSQGILQ+DMWGV  T  LWDW AL+ +IA+
Sbjct: 532 FETIYHAALTASVEMAKKSGPYETYAGSPVSQGILQHDMWGVKETSGLWDWDALRAQIAQ 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL DL+ELGL
Sbjct: 592 HGIRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNQHLLHDLMELGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+++I   GSI  IE IP  ++ LYKTVWE+ QKT++DMAADRGA+IDQSQS N+
Sbjct: 652 WNDRMKNKIISQGGSIAGIEEIPAHIRALYKTVWELSQKTLIDMAADRGAYIDQSQSFNV 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++AE N+ K++SMHF+ WK GLKTGMYYLRT+PAANAIQFT+D+  +A            
Sbjct: 712 HIAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPAANAIQFTVDQKALAAPQ--------- 762

Query: 570 EIQADQEQAMAAMICRRDNKEDCIGVQG 597
             + D+E   AAM+C   NKE C+   G
Sbjct: 763 --KVDEE---AAMVCSLQNKEACLMCSG 785



 Score =  309 bits (792), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 146/230 (63%), Positives = 180/230 (78%), Gaps = 15/230 (6%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGV  T  LWDW AL+ +IA+HG+RNSLL+APMPTASTAQILGNNES EPYTSNI
Sbjct: 566 LQHDMWGVKETSGLWDWDALRAQIAQHGIRNSLLVAPMPTASTAQILGNNESIEPYTSNI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQ+VN HLL DL+ELGLW+D MK+++I   GSI  IE IP  ++ LYKTVW
Sbjct: 626 YTRRVLSGEFQIVNQHLLHDLMELGLWNDRMKNKIISQGGSIAGIEEIPAHIRALYKTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+ QKT++DMAADRGA+IDQSQS N+++AE N+ K++SMHF+ WK GLKTGMYYLRT+PA
Sbjct: 686 ELSQKTLIDMAADRGAYIDQSQSFNVHIAEPNFGKLTSMHFYAWKRGLKTGMYYLRTRPA 745

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           ANAIQFT+D+  +A              + D+E   AAM+C   NKE CL
Sbjct: 746 ANAIQFTVDQKALAAPQ-----------KVDEE---AAMVCSLQNKEACL 781



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLF+ LWIPD FM+RVE+D  WSLMC
Sbjct: 293 RPGAFAMYLEPWHADVFDFLELKKNTGKEEQRARDLFFALWIPDLFMKRVEADGNWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL +++G+KF++LY +YE EG
Sbjct: 353 PHECPGLEETYGDKFEELYTRYEREG 378



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FIQMR+PFD  +++ LN++IFETIY+ AL AS E+A + GPY+TY GSPVS
Sbjct: 503 LGVQGLADAFIQMRVPFDSEDAKKLNREIFETIYHAALTASVEMAKKSGPYETYAGSPVS 562

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           QGILQ+DMWGV  T  LWDW AL+     +G++
Sbjct: 563 QGILQHDMWGVKETSGLWDWDALRAQIAQHGIR 595



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L D  A +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVINGVYPGVTTVEL-DTLAAETAAYLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY   N +TG   P+++D  YEII +NAD L+SA+IYDRDF+Y++FGFK
Sbjct: 90  TKKQFSSVMRDLYEYQNPKTGKPAPLLADDVYEIIQRNADILDSAVIYDRDFSYSYFGFK 149



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   ++   KLWFAIL+SQ E+GTPYMLYKDACN KSNQ+NL  I+
Sbjct: 379 KARKVIKAQKLWFAILESQTESGTPYMLYKDACNIKSNQKNLGTIK 424


>gi|442750421|gb|JAA67370.1| Putative ribonucleotide reductase alpha subunit [Ixodes ricinus]
          Length = 762

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/463 (73%), Positives = 403/463 (87%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FM RVE +  WSLMC
Sbjct: 293 RPGAIAIYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMERVEKNETWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G+KF+ LY KYE+E ++IRQVPA+KLW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDDVYGKKFEQLYTKYESEKRYIRQVPAQKLWYAIVESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTIKCSNLCTEIVEYTS  EVAVCNLASIALN ++   +  ++F +L+ V++
Sbjct: 413 EKSNQKNIGTIKCSNLCTEIVEYTSDKEVAVCNLASIALNRFVR--NGHFDFEQLRRVSR 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T NLN+II+ NFYP+ EA+ SNMRHRPIGIGVQGLAD FI +RLPFD  E+RLLN+QI
Sbjct: 471 IITVNLNRIIERNFYPIPEAKLSNMRHRPIGIGVQGLADTFILLRLPFDSEEARLLNRQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALE SCE+A   GPY+TY GSPVS+G+LQYDMWGV PT++WDW +LK++I K+
Sbjct: 531 FETIYYGALEQSCELAKNLGPYETYPGSPVSKGLLQYDMWGVKPTEMWDWTSLKKQIVKY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y+RRVLSGEFQVVN+HLL+DL + GLW
Sbjct: 591 GVRNSLLVAPMPTASTAQILGNNESIEPYTTNVYTRRVLSGEFQVVNYHLLKDLTDRGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K+ LI N+GS+Q +  IP  LK LY+TVWEIPQK +L+MAADRGAFIDQSQSLNI+
Sbjct: 651 NDELKNALIANHGSVQKL-NIPDDLKHLYRTVWEIPQKHILEMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A+  Y+K++SMHF GWKLGLKTGMYYLRTKPAANAIQFT+DK
Sbjct: 710 IAQPTYSKITSMHFFGWKLGLKTGMYYLRTKPAANAIQFTVDK 752



 Score =  309 bits (791), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 139/189 (73%), Positives = 169/189 (89%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV PT++WDW +LK++I K+GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y
Sbjct: 565 LQYDMWGVKPTEMWDWTSLKKQIVKYGVRNSLLVAPMPTASTAQILGNNESIEPYTTNVY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN+HLL+DL + GLW+D +K+ LI N+GS+Q +  IP  LK LY+TVWE
Sbjct: 625 TRRVLSGEFQVVNYHLLKDLTDRGLWNDELKNALIANHGSVQKL-NIPDDLKHLYRTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L+MAADRGAFIDQSQSLNI++A+  Y+K++SMHF GWKLGLKTGMYYLRTKPAA
Sbjct: 684 IPQKHILEMAADRGAFIDQSQSLNIHIAQPTYSKITSMHFFGWKLGLKTGMYYLRTKPAA 743

Query: 949 NAIQFTIDK 957
           NAIQFT+DK
Sbjct: 744 NAIQFTVDK 752



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 77/92 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +RLPFD  E+RLLN+QIFETIYYGALE SCE+A   GPY+TY GSPVS
Sbjct: 502 IGVQGLADTFILLRLPFDSEEARLLNRQIFETIYYGALEQSCELAKNLGPYETYPGSPVS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDMWGV PT++WDW +LK   + YG++
Sbjct: 562 KGLLQYDMWGVKPTEMWDWTSLKKQIVKYGVR 593



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FM RVE +  WSLMC
Sbjct: 293 RPGAIAIYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMERVEKNETWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL D +G+KF+ LY KYE+E
Sbjct: 353 PNDCPGLDDVYGKKFEQLYTKYESE 377



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  LY+M+N+     TPMI ++ Y+I+M+NAD  NSAI+YDRDFNYN+FGFK
Sbjct: 96  EVISNLYHMINESNNLHTPMIDEEIYKIVMENADTFNSAIVYDRDFNYNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI++SQ ETGTPYMLYKDACN KSNQ+N+  I+
Sbjct: 388 KLWYAIVESQTETGTPYMLYKDACNEKSNQKNIGTIK 424


>gi|380020101|ref|XP_003693934.1| PREDICTED: LOW QUALITY PROTEIN: ribonucleoside-diphosphate
           reductase large subunit-like [Apis florea]
          Length = 822

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/468 (73%), Positives = 400/468 (85%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNGIWTLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG +F+ LY +YE E ++ RQ+ AR LW AIL SQ+ETGTPYMLYKD CN
Sbjct: 359 PHESPGLADVWGNEFEILYTRYENEKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN QN+GTIK SNLCTE+V+Y+S DEVAVCNLASIA+NM++NP ++T++F KL  V K
Sbjct: 419 RKSNHQNIGTIKSSNLCTEVVQYSSPDEVAVCNLASIAVNMFVNPNNQTFDFQKLLKVTK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT NL+KIIDVN+YP+ EAR SN RHRPIGIG+QGLAD F+ MR PF+  E++ LN QI
Sbjct: 479 IVTCNLDKIIDVNYYPIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A   G Y+TYEGSPVS+GILQYDMW V PT+LWDW  LK KIAK+
Sbjct: 539 FETLYYGALEASCELAEEKGTYETYEGSPVSKGILQYDMWNVIPTNLWDWTILKXKIAKY 598

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLRDL E  LW
Sbjct: 599 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLW 658

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++MK+++I NNGSIQDIE IP  LK LYKTVWEIPQK +L MAADRGAFIDQSQSLN++
Sbjct: 659 DEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           MA+    K++SMHF+GWK+GLKTGMYYLRTKPAANA+QFT+DK+K+ N
Sbjct: 719 MAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAANALQFTVDKSKLRN 766



 Score =  323 bits (828), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 150/194 (77%), Positives = 171/194 (88%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT+LWDW  LK KIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 573 LQYDMWNVIPTNLWDWTILKXKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLRDL E  LWD++MK+++I NNGSIQDIE IP  LK LYKTVWE
Sbjct: 633 TRRVLSGEFQVVNPHLLRDLTERDLWDEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAFIDQSQSLN++MA+    K++SMHF+GWK+GLKTGMYYLRTKPAA
Sbjct: 693 IPQKIILKMAADRGAFIDQSQSLNVHMAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAA 752

Query: 949 NAIQFTIDKTKMAN 962
           NA+QFT+DK+K+ N
Sbjct: 753 NALQFTVDKSKLRN 766



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNGIWTLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL+D WG +F+ LY +YE E
Sbjct: 359 PHESPGLADVWGNEFEILYTRYENE 383



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+A   G Y+TYEGSPVS
Sbjct: 510 IGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCELAEEKGTYETYEGSPVS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PT+LWDW  LK     YG++
Sbjct: 570 KGILQYDMWNVIPTNLWDWTILKXKIAKYGVR 601



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I       L+K+     S     EV+  LY++  + T  + P+IS+K+Y II 
Sbjct: 80  YAILAARIAISN---LHKETTKSFS-----EVMYNLYHVKEQYTNNQKPVISEKYYNIIQ 131

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           KNA++LNSAIIYDRDF+YN+FGFK
Sbjct: 132 KNANKLNSAIIYDRDFSYNYFGFK 155



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL SQ+ETGTPYMLYKD CNRKSN QN+  I+
Sbjct: 395 LWTAILISQVETGTPYMLYKDHCNRKSNHQNIGTIK 430


>gi|349605784|gb|AEQ00901.1| Ribonucleoside-diphosphate reductase large subunit-like protein,
           partial [Equus caballus]
          Length = 492

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/495 (70%), Positives = 417/495 (84%), Gaps = 7/495 (1%)

Query: 99  LEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLS 158
           LEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD F +RVES+  WSLMCPN C GL 
Sbjct: 1   LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFKKRVESNQDWSLMCPNECPGLD 60

Query: 159 DSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 218
           + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL
Sbjct: 61  EVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 120

Query: 219 GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNK 278
           GTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNM++  ++ TY+F KL +V K++ +NLNK
Sbjct: 121 GTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVT-SEHTYDFQKLAEVTKVIVRNLNK 179

Query: 279 IIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGA 338
           IID+N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQIFETIYYGA
Sbjct: 180 IIDINYYPIPEACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGA 239

Query: 339 LEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLI 398
           LEASC+++  DGPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+GVRNSLLI
Sbjct: 240 LEASCDLSKEDGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGVRNSLLI 299

Query: 399 APMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQL 458
           APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+
Sbjct: 300 APMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQI 359

Query: 459 IVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAK 518
           I  NGSIQ I+ IP  LK LYKTVWEI QKT+L MAA+RGAFIDQSQSLNI++AE NY K
Sbjct: 360 IACNGSIQSIQEIPDDLKQLYKTVWEISQKTILKMAAERGAFIDQSQSLNIHIAEPNYGK 419

Query: 519 MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQA 578
           ++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +   +     +      +E+ 
Sbjct: 420 LTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE------KERN 473

Query: 579 MAAMICRRDNKEDCI 593
            AAM+C  +N+++C+
Sbjct: 474 TAAMVCSLENRDECL 488



 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/229 (68%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 266 LQYDMWNVTPTDLWDWKLLKEKIAKYGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 325

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I+ IP  LK LYKTVWE
Sbjct: 326 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIQEIPDDLKQLYKTVWE 385

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 386 ISQKTILKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 445

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 446 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 488



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 82/104 (78%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC+++  D
Sbjct: 191 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLSKED 250

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 251 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGVR 294



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 65/80 (81%)

Query: 9  LEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLS 68
          LEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD F +RVES+  WSLMCPN C GL 
Sbjct: 1  LEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFKKRVESNQDWSLMCPNECPGLD 60

Query: 69 DSWGEKFDDLYKKYEAEGLV 88
          + WGE+F+ LY+ YE +G V
Sbjct: 61 EVWGEEFEKLYESYEKQGRV 80



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 79  RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 124


>gi|268573646|ref|XP_002641800.1| C. briggsae CBR-RNR-1 protein [Caenorhabditis briggsae]
          Length = 790

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/494 (69%), Positives = 407/494 (82%), Gaps = 4/494 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF  LW+PD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WGE+F+ LY KYEAEG+  + V ARKLW  I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFETLYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAAN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEI+EY++ DEVAVCNLASIALN ++   DK ++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALNRFVT-NDKKFDFVKLAEVTK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLNKIIDVN+YP+EEARNSNMRHRPIG+GVQGLAD F+ MR PF   ++R LNK+I
Sbjct: 478 VITKNLNKIIDVNYYPIEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSPQARDLNKRI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A RDGPY TYEGSPVS+G LQ+DMWGVTPT+  +W  L++KIAKH
Sbjct: 538 FETIYYAALEASCELAERDGPYSTYEGSPVSKGQLQFDMWGVTPTNQCNWDELRKKIAKH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GVRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK++LI NNGSIQ+I GIP  +K+LY TVWEI QK +++MAADRGAFIDQSQSLNI+
Sbjct: 658 TDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWEISQKEIIEMAADRGAFIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK  +      K   ++  
Sbjct: 718 MAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKAALQQKNVQK---AESR 774

Query: 571 IQADQEQAMAAMIC 584
           + + + Q    ++C
Sbjct: 775 VASPEAQDEGCLMC 788



 Score =  311 bits (798), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 144/220 (65%), Positives = 179/220 (81%), Gaps = 3/220 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPT+  +W  L++KIAKHGVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 572 LQFDMWGVTPTNQCNWDELRKKIAKHGVRNSLLMAPMPTASTAQILGNNESIEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSG+FQ+VN H+L+DLVE GLW D MK++LI NNGSIQ+I GIP  +K+LY TVWE
Sbjct: 632 SRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIPGIPDDIKELYLTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADRGAFIDQSQSLNI+MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA 
Sbjct: 692 ISQKEIIEMAADRGAFIDQSQSLNIHMAKPSYAAITSMHFYGWKKGLKTGMYYLRTKPAV 751

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           NA+QFT+DK  +      K   ++  + + + Q    ++C
Sbjct: 752 NAVQFTVDKAALQQKNVQK---AESRVASPEAQDEGCLMC 788



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 70/88 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF  LW+PD FM+RVE D  WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVALRKNTGPEEERARDLFLALWVPDLFMKRVEKDQDWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P  C GL D WGE+F+ LY KYEAEG V
Sbjct: 359 PCECPGLDDCWGEEFETLYAKYEAEGRV 386



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF   ++R LNK+IFETIYY ALEASCE+A RDGPY TYEGSPVS
Sbjct: 509 LGVQGLADCFMLMRYPFTSPQARDLNKRIFETIYYAALEASCELAERDGPYSTYEGSPVS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+DMWGVTPT+  +W  L+     +G++
Sbjct: 569 KGQLQFDMWGVTPTNQCNWDELRKKIAKHGVR 600



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A +      +A+L ++I             ++K+N+   EV++ 
Sbjct: 56  GVTTVELDNLAA-ETAASMTTQHPEYALLAARIAVSN--------LHKKTNKVFSEVMKT 106

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+   +  TG   PMISD+ +EII KNAD+LNSAI+YDRD++Y +FGFK
Sbjct: 107 LHEFHHPHTGKHAPMISDETWEIIQKNADKLNSAIVYDRDYSYTYFGFK 155



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+    A  +V   V   KLW  I+ +QIETG PY+ YKDA NRKSNQQNL
Sbjct: 367 DCWGEEFETLYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNL 426

Query: 717 EVIE 720
             I+
Sbjct: 427 GTIK 430


>gi|241854846|ref|XP_002415982.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
 gi|215510196|gb|EEC19649.1| ribonucleotide reductase, alpha subunit, putative [Ixodes
           scapularis]
          Length = 766

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/464 (72%), Positives = 402/464 (86%), Gaps = 3/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFYGLWIPD FM+RVE D  WSLMC
Sbjct: 302 RPGAIAIYLEPWHADVFDFLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEEDGIWSLMC 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE F+ LY +YE E ++ RQV A++LW AI++SQ ETGTPYMLYKDACN
Sbjct: 362 PHESPHLQDVYGEDFEKLYVRYETEKRYRRQVRAQQLWSAIIESQTETGTPYMLYKDACN 421

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+GTIKCSNLCTEIVEYTS DEVAVCNLASIALN ++      ++F KL+ V +
Sbjct: 422 RKSNQKNVGTIKCSNLCTEIVEYTSVDEVAVCNLASIALNRFVYHGH--FDFEKLRQVTR 479

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YP+ EA+ SNMRHRPIGIGVQGLAD FI +RLPFDC+E+  +NK+I
Sbjct: 480 VVTRNLNKIIDVNYYPIPEAKLSNMRHRPIGIGVQGLADAFILLRLPFDCDEACEINKKI 539

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALE SCE++ + GPY+TY GSPVSQGILQYDMW VTP++LWDW+ALKE+I   
Sbjct: 540 FETIYYGALEESCELSKKFGPYETYPGSPVSQGILQYDMWNVTPSNLWDWSALKERIKSF 599

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE+ EPYTSN+Y+RRVLSGEFQ+VNHHLL+DL  LGLW
Sbjct: 600 GIRNSLLVAPMPTASTAQILGNNEAMEPYTSNVYTRRVLSGEFQIVNHHLLKDLTRLGLW 659

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +DN+K++LI NNGS+Q +  IP++LK LY+TVWEI QK +L+M+ADRGAF+DQSQSLNI+
Sbjct: 660 NDNLKNELIANNGSVQKL-NIPKELKMLYRTVWEISQKNILEMSADRGAFVDQSQSLNIH 718

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +A+  Y K++SMHF GWKLGLKTGMYYLRTKPA NAIQFT+DK+
Sbjct: 719 IAQPTYGKLTSMHFCGWKLGLKTGMYYLRTKPAVNAIQFTVDKS 762



 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 138/190 (72%), Positives = 170/190 (89%), Gaps = 1/190 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP++LWDW+ALKE+I   G+RNSLL+APMPTASTAQILGNNE+ EPYTSN+Y
Sbjct: 574 LQYDMWNVTPSNLWDWSALKERIKSFGIRNSLLVAPMPTASTAQILGNNEAMEPYTSNVY 633

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VNHHLL+DL  LGLW+DN+K++LI NNGS+Q +  IP++LK LY+TVWE
Sbjct: 634 TRRVLSGEFQIVNHHLLKDLTRLGLWNDNLKNELIANNGSVQKL-NIPKELKMLYRTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L+M+ADRGAF+DQSQSLNI++A+  Y K++SMHF GWKLGLKTGMYYLRTKPA 
Sbjct: 693 ISQKNILEMSADRGAFVDQSQSLNIHIAQPTYGKLTSMHFCGWKLGLKTGMYYLRTKPAV 752

Query: 949 NAIQFTIDKT 958
           NAIQFT+DK+
Sbjct: 753 NAIQFTVDKS 762



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 78/92 (84%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +RLPFDC+E+  +NK+IFETIYYGALE SCE++ + GPY+TY GSPVS
Sbjct: 511 IGVQGLADAFILLRLPFDCDEACEINKKIFETIYYGALEESCELSKKFGPYETYPGSPVS 570

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTP++LWDW+ALK     +G++
Sbjct: 571 QGILQYDMWNVTPSNLWDWSALKERIKSFGIR 602



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFYGLWIPD FM+RVE D  WSLMC
Sbjct: 302 RPGAIAIYLEPWHADVFDFLDLKKNTGKEESRARDLFYGLWIPDLFMKRVEEDGIWSLMC 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+    L D +GE F+ LY +YE E
Sbjct: 362 PHESPHLQDVYGEDFEKLYVRYETE 386



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 46/54 (85%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +LY+MVN+  G  TPMIS++ Y+I+M NAD LNS+I+YDRDFNYN+FGFK
Sbjct: 105 EVMTDLYHMVNETNGKSTPMISEETYKIVMNNADFLNSSIVYDRDFNYNYFGFK 158



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW AI++SQ ETGTPYMLYKDACNRKSNQ+N+  I+
Sbjct: 393 VRAQQLWSAIIESQTETGTPYMLYKDACNRKSNQKNVGTIK 433


>gi|229597646|pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg.
 gi|229597647|pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
           Complex With Datp And Mg
          Length = 676

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/451 (75%), Positives = 391/451 (86%), Gaps = 1/451 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 339

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 340 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 398

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 399 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 458

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+
Sbjct: 459 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 518

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 519 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 578

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 579 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 638

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           +AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 639 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/177 (77%), Positives = 154/177 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 493 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 552

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 553 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 612

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 613 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 418 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 477

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 478 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 521



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRV 307



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 23  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 76



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 306 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 351


>gi|442761207|gb|JAA72762.1| Putative ribonucleotide reductase alpha subunit, partial [Ixodes
           ricinus]
          Length = 740

 Score =  730 bits (1885), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/463 (72%), Positives = 400/463 (86%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FM RVE +  WSLMC
Sbjct: 271 RPGAIAIYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMERVEKNETWSLMC 330

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G+KF+ LY KYE+E ++IRQVPA+KLW+AI++SQ ETGTPYMLYKDACN
Sbjct: 331 PNDCPGLDDVYGKKFEQLYTKYESEKRYIRQVPAQKLWYAIVESQTETGTPYMLYKDACN 390

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTIKCSNLCTEIVEYTS  EVAVCNLASIALN ++   +  ++F +L+ V++
Sbjct: 391 EKSNQKNIGTIKCSNLCTEIVEYTSDKEVAVCNLASIALNRFVR--NGHFDFEQLRRVSR 448

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T NLN+II+ NFYP+ EA+ SNMRHRPIGIGVQGLAD FI +RLPFD  E+RLLN+QI
Sbjct: 449 IITVNLNRIIERNFYPIPEAKLSNMRHRPIGIGVQGLADTFILLRLPFDSEEARLLNRQI 508

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALE SCE+A   GPY+TY GSPVS+G+LQYDM    PT++WDW +LK++I K+
Sbjct: 509 FETIYYGALEQSCELAKNLGPYETYPGSPVSKGLLQYDMXXXKPTEMWDWTSLKKQIVKY 568

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y+RRVLSGEFQVVN+HLL+DL + GLW
Sbjct: 569 GVRNSLLVAPMPTASTAQILGNNESIEPYTTNVYTRRVLSGEFQVVNYHLLKDLTDRGLW 628

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K+ LI N+GS+Q +  IP  LK LY+TVWEIPQK +L+MAADRGAFIDQSQSLNI+
Sbjct: 629 NDELKNALIANHGSVQKL-NIPDDLKHLYRTVWEIPQKHILEMAADRGAFIDQSQSLNIH 687

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A+  Y+K++SMHF GWKLGLKTGMYYLRTKPAANAIQFT+DK
Sbjct: 688 IAQPTYSKITSMHFFGWKLGLKTGMYYLRTKPAANAIQFTVDK 730



 Score =  299 bits (766), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 136/189 (71%), Positives = 166/189 (87%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDM    PT++WDW +LK++I K+GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y
Sbjct: 543 LQYDMXXXKPTEMWDWTSLKKQIVKYGVRNSLLVAPMPTASTAQILGNNESIEPYTTNVY 602

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN+HLL+DL + GLW+D +K+ LI N+GS+Q +  IP  LK LY+TVWE
Sbjct: 603 TRRVLSGEFQVVNYHLLKDLTDRGLWNDELKNALIANHGSVQKL-NIPDDLKHLYRTVWE 661

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L+MAADRGAFIDQSQSLNI++A+  Y+K++SMHF GWKLGLKTGMYYLRTKPAA
Sbjct: 662 IPQKHILEMAADRGAFIDQSQSLNIHIAQPTYSKITSMHFFGWKLGLKTGMYYLRTKPAA 721

Query: 949 NAIQFTIDK 957
           NAIQFT+DK
Sbjct: 722 NAIQFTVDK 730



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH D+FDFL+LKKNTGKEE RARDLFY LWIPD FM RVE +  WSLMC
Sbjct: 271 RPGAIAIYLEPWHADVFDFLDLKKNTGKEENRARDLFYALWIPDLFMERVEKNETWSLMC 330

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL D +G+KF+ LY KYE+E
Sbjct: 331 PNDCPGLDDVYGKKFEQLYTKYESE 355



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +RLPFD  E+RLLN+QIFETIYYGALE SCE+A   GPY+TY GSPVS
Sbjct: 480 IGVQGLADTFILLRLPFDSEEARLLNRQIFETIYYGALEQSCELAKNLGPYETYPGSPVS 539

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYDM    PT++WDW +LK   + YG++
Sbjct: 540 KGLLQYDMXXXKPTEMWDWTSLKKQIVKYGVR 571



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  LY+M+N+     TPMI ++ Y+I+M+NAD  NSAI+YDRDFNYN+FGFK
Sbjct: 74  EVISNLYHMINESNNLHTPMIDEEIYKIVMENADTFNSAIVYDRDFNYNYFGFK 127



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI++SQ ETGTPYMLYKDACN KSNQ+N+  I+
Sbjct: 366 KLWYAIVESQTETGTPYMLYKDACNEKSNQKNIGTIK 402


>gi|294471317|gb|ADE80903.1| RR1 [Spodoptera litura NPV]
          Length = 772

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/465 (69%), Positives = 403/465 (86%), Gaps = 1/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 297 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D  G +F+ LY+KYE +G+++++V A+ LW AI+++Q+ETGTPYMLYKD+CN
Sbjct: 357 PMQSPGLADCHGVEFEALYEKYEKQGRYVKRVSAQTLWRAIIEAQVETGTPYMLYKDSCN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++ P    Y+F +LK++ K
Sbjct: 417 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLKEITK 476

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+IID N  P+ EA  SN R+RPIGIGVQG+AD F+ MR+P++ + +  LNK+I
Sbjct: 477 IVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKI 536

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK KI+K
Sbjct: 537 FETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISK 596

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 597 YGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGL 656

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+ ++ NNGS+Q+IE IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+
Sbjct: 657 WNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNV 716

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPAANAIQFT+DKT
Sbjct: 717 YMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 761



 Score =  306 bits (784), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 169/191 (88%), Gaps = 1/191 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW G TP++LWDW+ LK KI+K+G+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 571 LQYDMWNGATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 630

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D MK+ ++ NNGS+Q+IE IP +++ LYKTVW
Sbjct: 631 YQRRVLSGEFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVW 690

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T++ MAADRGAFIDQSQS N+YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA
Sbjct: 691 EMSMRTMIRMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPA 750

Query: 948 ANAIQFTIDKT 958
           ANAIQFT+DKT
Sbjct: 751 ANAIQFTVDKT 761



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 297 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D  G +F+ LY+KYE +G
Sbjct: 357 PMQSPGLADCHGVEFEALYEKYEKQG 382



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I A+Q     A    + N+   IGVQG+AD F+ MR+P++ + +  LNK+IFETIYYGAL
Sbjct: 486 IDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKIFETIYYGAL 545

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           EASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK     YGL+
Sbjct: 546 EASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLR 600



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             VI ++Y  ++++TG  TPMISD HY II  NADRLNSAI++DRDFNY++FGFK
Sbjct: 99  FNVIVDMYEAIDQKTGAATPMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFK 153



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 393 LWRAIIEAQVETGTPYMLYKDSCNRKSNQSNLGTIK 428


>gi|307196361|gb|EFN77956.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 849

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/523 (65%), Positives = 412/523 (78%), Gaps = 19/523 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLELK+N G    RARDLFY LW+PD FM RV  D  WSLMC
Sbjct: 324 RPGAFAVYLEPWHADIFDFLELKRNIGDGNLRARDLFYALWVPDLFMERVFDDEVWSLMC 383

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D WG++F++LY +YE EG++ RQV AR +W  IL SQ+ETGTPYMLYKD CN
Sbjct: 384 PYESPGLADVWGDEFNELYTRYEKEGRYKRQVQARDVWVTILRSQVETGTPYMLYKDHCN 443

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN Q+LGTIKCSNLCTEIVEY+S +EVAVCNLASIALNM++N   KT++F KLK V K
Sbjct: 444 RKSNHQHLGTIKCSNLCTEIVEYSSPEEVAVCNLASIALNMFVNTNKKTFDFDKLKTVVK 503

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NL+K+IDVNFYP+ E + SN RHRPIGIGVQGLAD F+ MR PF+  E++ LN +I
Sbjct: 504 IVTRNLDKVIDVNFYPIPETKRSNRRHRPIGIGVQGLADAFLLMRYPFESKEAKELNIKI 563

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+AA  G Y+TYEGSPVS+GILQYDMW V PTDLWDW  LK KIAKH
Sbjct: 564 FETLYYGALEASCELAAEKGTYETYEGSPVSKGILQYDMWNVKPTDLWDWDELKTKIAKH 623

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES E YTSNIY RRVLSGEF ++N HLLRDL   GLW
Sbjct: 624 GVRNSLLIAPMPTASTAQILGNNESIEAYTSNIYVRRVLSGEFVIINPHLLRDLTVRGLW 683

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +M+++++ N GS+Q+IE IP  LK+LYKTVWEI QK +L+MAADRGAFIDQSQSLNI+
Sbjct: 684 GKDMQNEILANFGSVQNIERIPDDLKELYKTVWEISQKVILEMAADRGAFIDQSQSLNIH 743

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS-------- 562
           +A+ +  K++SMHF GW+ GLKTGMYYLRTKPAAN IQFT+DK+K+ +  +         
Sbjct: 744 IADPSTEKLTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLQSRDSLSSSTSDIS 803

Query: 563 -------KDARSQEEIQADQEQA---MAAMI-CRRDNKEDCIG 594
                  KDA + E+     +QA   + AM+ C R+NK+ C+ 
Sbjct: 804 SPIKSPDKDADNSEKRNLINQQANKNLEAMLACARENKDACMA 846



 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/248 (60%), Positives = 185/248 (74%), Gaps = 19/248 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LK KIAKHGVRNSLLIAPMPTASTAQILGNNES E YTSNIY
Sbjct: 598 LQYDMWNVKPTDLWDWDELKTKIAKHGVRNSLLIAPMPTASTAQILGNNESIEAYTSNIY 657

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF ++N HLLRDL   GLW  +M+++++ N GS+Q+IE IP  LK+LYKTVWE
Sbjct: 658 VRRVLSGEFVIINPHLLRDLTVRGLWGKDMQNEILANFGSVQNIERIPDDLKELYKTVWE 717

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L+MAADRGAFIDQSQSLNI++A+ +  K++SMHF GW+ GLKTGMYYLRTKPAA
Sbjct: 718 ISQKVILEMAADRGAFIDQSQSLNIHIADPSTEKLTSMHFFGWRSGLKTGMYYLRTKPAA 777

Query: 949 NAIQFTIDKTKMANAMAS---------------KDTRSQEEIQADQEQA---MAAMI-CR 989
           N IQFT+DK+K+ +  +                KD  + E+     +QA   + AM+ C 
Sbjct: 778 NPIQFTVDKSKLQSRDSLSSSTSDISSPIKSPDKDADNSEKRNLINQQANKNLEAMLACA 837

Query: 990 RDNKEDCL 997
           R+NK+ C+
Sbjct: 838 RENKDACM 845



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/99 (62%), Positives = 76/99 (76%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   IGVQGLAD F+ MR PF+  E++ LN +IFET+YYGALEASCE+AA  G Y+T
Sbjct: 528 RRHRPIGIGVQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCELAAEKGTYET 587

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           YEGSPVS+GILQYDMW V PTDLWDW  LK     +G++
Sbjct: 588 YEGSPVSKGILQYDMWNVKPTDLWDWDELKTKIAKHGVR 626



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLELK+N G    RARDLFY LW+PD FM RV  D  WSLMC
Sbjct: 324 RPGAFAVYLEPWHADIFDFLELKRNIGDGNLRARDLFYALWVPDLFMERVFDDEVWSLMC 383

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D WG++F++LY +YE EG
Sbjct: 384 PYESPGLADVWGDEFNELYTRYEKEG 409



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I+            ++++ +   EV+ +L+   +  T    P+IS+ +Y II 
Sbjct: 105 YAILAARIDVSN--------LHKETKKSFSEVMHDLHYARDPITNEPNPVISEHYYNIIK 156

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           +NA+RL+SAIIYDRDFNYN+ GFK
Sbjct: 157 RNAERLDSAIIYDRDFNYNYMGFK 180



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W  IL SQ+ETGTPYMLYKD CNRKSN Q+L  I+
Sbjct: 420 VWVTILRSQVETGTPYMLYKDHCNRKSNHQHLGTIK 455


>gi|328770641|gb|EGF80682.1| hypothetical protein BATDEDRAFT_16482 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 796

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/510 (65%), Positives = 412/510 (80%), Gaps = 9/510 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KNTGKEE RARDLFY LWIPD FMRRVES+  WSL C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL D WG++FD LY+KYE EG+  + + A+KLW+AILDSQ ETGTPYMLYKDACN
Sbjct: 353 PAEAPGLDDVWGDEFDALYEKYEREGRARKIIKAQKLWYAILDSQSETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
           RKSNQQNLGTIKCSNLCTEIVEY+S DEVAVCNLAS+AL  ++         ++F K+ D
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYSSPDEVAVCNLASLALPNFVIKDTTGAPVFDFDKMID 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
             KI T NLNKII++N+YPVE+A+ SNMRHRPIG+GVQGLAD FI+MR+PFD  E++ LN
Sbjct: 473 TTKIATYNLNKIINLNYYPVEQAKRSNMRHRPIGLGVQGLADTFIKMRMPFDSPEAKKLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFE IY+ AL ASCE+A RDGPY+TY GSP+S+GI+Q DMW V  +D +DW  L+  I
Sbjct: 533 IQIFEAIYFAALTASCELAKRDGPYETYSGSPMSKGIIQPDMWNVKVSDQFDWPTLRANI 592

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           AK+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY RRVLSGEFQ+VN HLL+DL EL
Sbjct: 593 AKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRRVLSGEFQIVNQHLLKDLTEL 652

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+++MK+++I  NGSIQ+I  IP +LK +YKTVWEI QK ++DMAADRGAFIDQSQSL
Sbjct: 653 GLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQKVIIDMAADRGAFIDQSQSL 712

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           NI++AE+NY K++SMHF+GW  GLKTGMYYLR++PAA+AI+FT+DK  +     ++ A  
Sbjct: 713 NIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAIKFTVDKQSL-----TQGAED 767

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
           +  + A     M  M+C  +N++ C+   G
Sbjct: 768 KNNVVASVNN-MTDMLCSLENRDACMSCSG 796



 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/226 (61%), Positives = 177/226 (78%), Gaps = 6/226 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V  +D +DW  L+  IAK+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY RR
Sbjct: 573 DMWNVKVSDQFDWPTLRANIAKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYIRR 632

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEFQ+VN HLL+DL ELGLW+++MK+++I  NGSIQ+I  IP +LK +YKTVWEI Q
Sbjct: 633 VLSGEFQIVNQHLLKDLTELGLWNESMKNRIISANGSIQNIPSIPAQLKAIYKTVWEISQ 692

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++DMAADRGAFIDQSQSLNI++AE+NY K++SMHF+GW  GLKTGMYYLR++PAA+AI
Sbjct: 693 KVIIDMAADRGAFIDQSQSLNIHLAEVNYGKLTSMHFYGWHKGLKTGMYYLRSRPAADAI 752

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+DK  +      K+              M  M+C  +N++ C+
Sbjct: 753 KFTVDKQSLTQGAEDKNN------VVASVNNMTDMLCSLENRDACM 792



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KNTGKEE RARDLFY LWIPD FMRRVES+  WSL C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNTGKEENRARDLFYALWIPDMFMRRVESNGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL D WG++FD LY+KYE EG
Sbjct: 353 PAEAPGLDDVWGDEFDALYEKYEREG 378



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI+MR+PFD  E++ LN QIFE IY+ AL ASCE+A RDGPY+TY GSP+S
Sbjct: 507 LGVQGLADTFIKMRMPFDSPEAKKLNIQIFEAIYFAALTASCELAKRDGPYETYSGSPMS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI+Q DMW V  +D +DW  L+     YG++
Sbjct: 567 KGIIQPDMWNVKVSDQFDWPTLRANIAKYGVR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 39  VAQKVVTGVYQGVTTVELDNLAA-ETTAYLTTKHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+++LY  VN +    +PMIS   ++ I+KNADRLNSAIIYDRDFNYNFFGFK
Sbjct: 90  TKKQFSSVMQDLYEYVNPKNNKHSPMISKTTFDCILKNADRLNSAIIYDRDFNYNFFGFK 149



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   KLW+AILDSQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 383 IIKAQKLWYAILDSQSETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|449017740|dbj|BAM81142.1| ribonucleoside-diphosphate reductase alpha chain [Cyanidioschyzon
           merolae strain 10D]
          Length = 811

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/515 (65%), Positives = 413/515 (80%), Gaps = 11/515 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF++L+LKKN GKEE RARDLFY LW PD FMRRVE++ QWSL C
Sbjct: 294 RKGAFAVYLEPWHADIFEWLDLKKNHGKEEARARDLFYALWTPDLFMRRVEANEQWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG+ FD+LY++YEAEG+    +PARKLWF+IL+SQIETGTPYMLYKD CN
Sbjct: 354 PNEAPGLADVWGDAFDELYQRYEAEGRAREVIPARKLWFSILESQIETGTPYMLYKDHCN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK------TYNFTK 264
           RKSNQQNLGTI+CSNLCTEIVEYT+ DEVAVCNLASIALN ++ P D+       +NF +
Sbjct: 414 RKSNQQNLGTIRCSNLCTEIVEYTAPDEVAVCNLASIALNKFVVPGDRERGTCPVFNFDE 473

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L  V ++VTKNLNKIIDVNFYP+ EA+NSN+RHRPIGIGVQGLAD FI MR+PF+ +E+R
Sbjct: 474 LAFVTRMVTKNLNKIIDVNFYPIPEAQNSNLRHRPIGIGVQGLADAFILMRMPFESDEAR 533

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT-DLWDWAAL 383
            LN++IFE IYY AL+AS E+A RDGPY ++EGSP ++G LQ+D+W V PT   WDW AL
Sbjct: 534 ALNQEIFECIYYNALQASIELAERDGPYASFEGSPAARGQLQFDLWNVKPTSSRWDWDAL 593

Query: 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           KE+I  HG+RNSLL+APMPTAST+QILGNNE FEPYTSN+Y+RRVL+GEF VVN HL+RD
Sbjct: 594 KERITLHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNLYTRRVLAGEFTVVNQHLVRD 653

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
           L ELGLW+  +K+++I + GSIQ I  IPQ ++DLYKTVWE+ Q+ +LD+AADRGAFIDQ
Sbjct: 654 LQELGLWNPLVKNKIIAHGGSIQQIPEIPQDIRDLYKTVWEVSQRRLLDLAADRGAFIDQ 713

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID----KTKMANA 559
           SQSLN+Y+A+    K+SSMHFHGW+LGLKTGMYYLRT+PAA+AI+FT+D    K +   A
Sbjct: 714 SQSLNVYIAQPTIGKLSSMHFHGWRLGLKTGMYYLRTRPAADAIKFTLDQRILKEENHTA 773

Query: 560 MASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
           +           +    +  AA+ C  D K+DCI 
Sbjct: 774 VNGSQLPCNLTPRTSAAEQFAALACSLDKKDDCIA 808



 Score =  299 bits (765), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 153/286 (53%), Positives = 199/286 (69%), Gaps = 23/286 (8%)

Query: 733 RTPMISDKH-------YEIIMKNADRLNSAI-IYDRDFNYNFF--------GFKYDMWGV 776
           R P  SD+        +E I  NA  L ++I + +RD  Y  F          ++D+W V
Sbjct: 524 RMPFESDEARALNQEIFECIYYNA--LQASIELAERDGPYASFEGSPAARGQLQFDLWNV 581

Query: 777 TPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
            PT   WDW ALKE+I  HG+RNSLL+APMPTAST+QILGNNE FEPYTSN+Y+RRVL+G
Sbjct: 582 KPTSSRWDWDALKERITLHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNLYTRRVLAG 641

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN HL+RDL ELGLW+  +K+++I + GSIQ I  IPQ ++DLYKTVWE+ Q+ +L
Sbjct: 642 EFTVVNQHLVRDLQELGLWNPLVKNKIIAHGGSIQQIPEIPQDIRDLYKTVWEVSQRRLL 701

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D+AADRGAFIDQSQSLN+Y+A+    K+SSMHFHGW+LGLKTGMYYLRT+PAA+AI+FT+
Sbjct: 702 DLAADRGAFIDQSQSLNVYIAQPTIGKLSSMHFHGWRLGLKTGMYYLRTRPAADAIKFTL 761

Query: 956 DKTKMANAMASKDTRSQEEI----QADQEQAMAAMICRRDNKEDCL 997
           D+  +     +    SQ       +    +  AA+ C  D K+DC+
Sbjct: 762 DQRILKEENHTAVNGSQLPCNLTPRTSAAEQFAALACSLDKKDDCI 807



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF++L+LKKN GKEE RARDLFY LW PD FMRRVE++ QWSL C
Sbjct: 294 RKGAFAVYLEPWHADIFEWLDLKKNHGKEEARARDLFYALWTPDLFMRRVEANEQWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG+ FD+LY++YEAEG
Sbjct: 354 PNEAPGLADVWGDAFDELYQRYEAEG 379



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 13/159 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR+PF+ +E+R LN++IFE IYY AL+AS E+A RDGPY ++EGSP +
Sbjct: 511 IGVQGLADAFILMRMPFESDEARALNQEIFECIYYNALQASIELAERDGPYASFEGSPAA 570

Query: 653 QGILQYDMWGVTPT-DLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR- 709
           +G LQ+D+W V PT   WDW ALK    ++GL+   ++L + + T  T  +L  + C   
Sbjct: 571 RGQLQFDLWNVKPTSSRWDWDALKERITLHGLR--NSLLVAPMPTASTSQILGNNECFEP 628

Query: 710 -KSNQQNLEVIEELYNMVN-------KETGTRTPMISDK 740
             SN     V+   + +VN       +E G   P++ +K
Sbjct: 629 YTSNLYTRRVLAGEFTVVNQHLVRDLQELGLWNPLVKNK 667



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG    +L+    A  +   ++   KLWF+IL+SQIETGTPYMLYKD CNRKSNQQNL
Sbjct: 362 DVWGDAFDELYQRYEAEGRAREVIPARKLWFSILESQIETGTPYMLYKDHCNRKSNQQNL 421

Query: 717 EVI 719
             I
Sbjct: 422 GTI 424



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+E LY   + +T    P+I+    EI+ ++A+ ++ AIIYDRDF+Y++FGFK
Sbjct: 98  VMERLYAYRSPKTNDPAPLIASDVIEIVRRHAETIDGAIIYDRDFSYDYFGFK 150


>gi|449139070|gb|AGE89875.1| RR1 [Spodoptera littoralis NPV]
          Length = 828

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/464 (69%), Positives = 401/464 (86%), Gaps = 1/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 339 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 398

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D  G +F+ LY+KYE +G+++++V A+ LW AI+++Q+ETGTPYMLYKD+CN
Sbjct: 399 PMQSPGLADCHGVEFEALYEKYEKQGRYVKRVSAQTLWRAIIEAQVETGTPYMLYKDSCN 458

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++ P    Y+F +LK++ K
Sbjct: 459 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLKEITK 518

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+IID N  P+ EA  SN R+RPIGIGVQG+AD F+ MR+P++ + +  LNK+I
Sbjct: 519 IVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKI 578

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK KI+K
Sbjct: 579 FETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISK 638

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 639 YGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGL 698

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+ ++ NNGS+Q+IE IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+
Sbjct: 699 WNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNV 758

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA NAIQFT+DK
Sbjct: 759 YMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTVDK 802



 Score =  302 bits (774), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 167/190 (87%), Gaps = 1/190 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW G TP++LWDW+ LK KI+K+G+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 613 LQYDMWNGATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 672

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D MK+ ++ NNGS+Q+IE IP +++ LYKTVW
Sbjct: 673 YQRRVLSGEFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVW 732

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T++ MAADRGAFIDQSQS N+YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA
Sbjct: 733 EMSMRTMIRMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPA 792

Query: 948 ANAIQFTIDK 957
            NAIQFT+DK
Sbjct: 793 VNAIQFTVDK 802



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 339 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 398

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D  G +F+ LY+KYE +G
Sbjct: 399 PMQSPGLADCHGVEFEALYEKYEKQG 424



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I A+Q     A    + N+   IGVQG+AD F+ MR+P++ + +  LNK+IFETIYYGAL
Sbjct: 528 IDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKIFETIYYGAL 587

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           EASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK     YGL+
Sbjct: 588 EASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLR 642



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             VI ++Y  ++++TG  TPMISD HY II  NADRLNSAI++DRDFNY++FGFK
Sbjct: 141 FNVIVDMYEAIDQKTGAATPMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFK 195



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 435 LWRAIIEAQVETGTPYMLYKDSCNRKSNQSNLGTIK 470


>gi|343425606|emb|CBQ69140.1| probable RNR1-ribonucleoside-diphosphate reductase large subunit
           [Sporisorium reilianum SRZ2]
          Length = 897

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/477 (68%), Positives = 401/477 (84%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YEAEG+F R V A+KLW+AIL+SQ ETG P++LYKDA N
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEGRFKRTVKAQKLWYAILESQTETGNPFILYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+EY++ DEVAVCNLASIAL  +I+P  KTY+F +L +VAK
Sbjct: 414 RKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYDFKRLHEVAK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNKIID+N+YPVEEAR SNMRHRPIGIGVQGLAD F+ M   F+  E+R LN QI
Sbjct: 474 AICKNLNKIIDINYYPVEEARRSNMRHRPIGIGVQGLADAFMIMGYAFESPEARRLNVQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE SCE+A   G Y+TY GSP SQG LQYDMWGVTP+DLWDWA LK KIAKH
Sbjct: 534 FETIYHAALERSCELAQEHGTYETYAGSPASQGELQYDMWGVTPSDLWDWAELKAKIAKH 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LLR+LVE GLW
Sbjct: 594 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLRELVEQGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ++ GIP+++K LYKTVWEI QK ++DMAADRGAFI QSQSLNI+
Sbjct: 654 NDTMKNRIIAHGGSIQNVPGIPERIKKLYKTVWEISQKAIIDMAADRGAFICQSQSLNIH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           ++   + +++SMHF+GWK GLKTG YYLRTKPA+NAIQFT+   ++  A A+   R+
Sbjct: 714 LSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTLSVAEVNEAKAAASKRT 770



 Score =  306 bits (783), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 172/203 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDWA LK KIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDMWGVTPSDLWDWAELKAKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LLR+LVE GLW+D MK+++I + GSIQ++ GIP+++K LYKTVWE
Sbjct: 628 SRRVLAGEFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPERIKKLYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAFI QSQSLNI+++   + +++SMHF+GWK GLKTG YYLRTKPA+
Sbjct: 688 ISQKAIIDMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPAS 747

Query: 949 NAIQFTIDKTKMANAMASKDTRS 971
           NAIQFT+   ++  A A+   R+
Sbjct: 748 NAIQFTLSVAEVNEAKAAASKRT 770



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY++YEAEG
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEG 379



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M   F+  E+R LN QIFETIY+ ALE SCE+A   G Y+TY GSP S
Sbjct: 505 IGVQGLADAFMIMGYAFESPEARRLNVQIFETIYHAALERSCELAQEHGTYETYAGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWGVTP+DLWDWA LK     +GL+
Sbjct: 565 QGELQYDMWGVTPSDLWDWAELKAKIAKHGLR 596



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 69/109 (63%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A        +A+L ++I       L+K+   RK+  Q   V+++
Sbjct: 51  GVTTVELDNLAA-ETAAYKTTTHPDYAVLAARIAISN---LHKE--TRKNFSQ---VVQD 101

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN + G  +PMISD  Y+++M++ D+L+SAIIY+RDF+YNFFGFK
Sbjct: 102 LYEYVNPKNGRHSPMISDTTYKVVMEHKDQLDSAIIYERDFHYNFFGFK 150



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL+SQ ETG P++LYKDA NRKSNQ+NL  I+
Sbjct: 385 VKAQKLWYAILESQTETGNPFILYKDAANRKSNQKNLGTIK 425


>gi|307180389|gb|EFN68415.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 889

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/485 (67%), Positives = 403/485 (83%), Gaps = 2/485 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFLEL++N G    RARDLFYGLWIPD FM RV ++  WSLMC
Sbjct: 322 RPGAFAIYLEPWHADIFDFLELRRNIGDGNMRARDLFYGLWIPDLFMERVYNNENWSLMC 381

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F +LY +YE EG++ +QV AR +W AIL SQ+ETGTPYMLYKD CN
Sbjct: 382 PHESPGLADVWGDEFKELYIRYEKEGRYKKQVEARAVWVAILRSQVETGTPYMLYKDHCN 441

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN Q++GTIKCSNLCTE+++Y+   EVAVCNLASIA+NM++N  +KT++F KLK +AK
Sbjct: 442 RKSNHQHIGTIKCSNLCTEVIQYSGPGEVAVCNLASIAVNMFVNTNNKTFDFDKLKTIAK 501

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NL+K+IDVNFYP+ E + SN +HRPIGIG+QGLAD F+ MR PF+  E++ LN +I
Sbjct: 502 VVTRNLDKVIDVNFYPIVETKTSNQKHRPIGIGIQGLADAFLLMRYPFESKEAKELNIKI 561

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASC++AA  G Y+TYEGSPVS+GILQYDMW V PT+LWDW  LKEKIAKH
Sbjct: 562 FETLYYGALEASCKLAAEKGTYETYEGSPVSKGILQYDMWNVKPTNLWDWDKLKEKIAKH 621

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY RRVLSGEF +VN HLLRDL   GLW
Sbjct: 622 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLW 681

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++M+++++ + GS+Q+I+ IP  LK LYKTVWEIPQK +L+MAADRGAFIDQSQSLN++
Sbjct: 682 DEDMQNEILASFGSVQNIDRIPDDLKVLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVH 741

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN--AMASKDARSQ 568
           + +    K++SMHF GW+ GLKTGMYYLRTKPAAN IQFT+DK+K+ N  +++S    + 
Sbjct: 742 IGDPTTEKLTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDKSKLRNNDSISSASTVNN 801

Query: 569 EEIQA 573
             IQ+
Sbjct: 802 TPIQS 806



 Score =  309 bits (791), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 144/211 (68%), Positives = 175/211 (82%), Gaps = 2/211 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT+LWDW  LKEKIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 596 LQYDMWNVKPTNLWDWDKLKEKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 655

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF +VN HLLRDL   GLWD++M+++++ + GS+Q+I+ IP  LK LYKTVWE
Sbjct: 656 VRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEILASFGSVQNIDRIPDDLKVLYKTVWE 715

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L+MAADRGAFIDQSQSLN+++ +    K++SMHF GW+ GLKTGMYYLRTKPAA
Sbjct: 716 IPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKLTSMHFFGWRSGLKTGMYYLRTKPAA 775

Query: 949 NAIQFTIDKTKMAN--AMASKDTRSQEEIQA 977
           N IQFT+DK+K+ N  +++S  T +   IQ+
Sbjct: 776 NPIQFTVDKSKLRNNDSISSASTVNNTPIQS 806



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFLEL++N G    RARDLFYGLWIPD FM RV ++  WSLMC
Sbjct: 322 RPGAFAIYLEPWHADIFDFLELRRNIGDGNMRARDLFYGLWIPDLFMERVYNNENWSLMC 381

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WG++F +LY +YE EG
Sbjct: 382 PHESPGLADVWGDEFKELYIRYEKEG 407



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN +IFET+YYGALEASC++AA  G Y+TYEGSPVS
Sbjct: 533 IGIQGLADAFLLMRYPFESKEAKELNIKIFETLYYGALEASCKLAAEKGTYETYEGSPVS 592

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PT+LWDW  LK     +G++
Sbjct: 593 KGILQYDMWNVKPTNLWDWDKLKEKIAKHGVR 624



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 10/85 (11%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNL-EVIEELYNMVNKETGTRTPMISDKHYEII 745
           +AIL ++I+    +         K  ++N  +V+ +LY+  +  T   TP+I++++Y II
Sbjct: 105 YAILAARIDVSNLH---------KETKKNFSKVMHDLYHARDSVTNQHTPIINERYYNII 155

Query: 746 MKNADRLNSAIIYDRDFNYNFFGFK 770
             NA++L+SAIIYDRDF+YN+ GFK
Sbjct: 156 KNNAEKLDSAIIYDRDFSYNYIGFK 180



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AIL SQ+ETGTPYMLYKD CNRKSN Q++  I+
Sbjct: 418 VWVAILRSQVETGTPYMLYKDHCNRKSNHQHIGTIK 453


>gi|156541405|ref|XP_001600772.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Nasonia vitripennis]
          Length = 797

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/494 (67%), Positives = 405/494 (81%), Gaps = 2/494 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+FL+LKKN GKEE+RAR+LFY LWIPD FM+RV  + +WSLMC
Sbjct: 305 RPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIPDLFMQRVLDNEKWSLMC 364

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY KYE E ++ RQ+ AR LW AIL +Q+ETGTPYMLYKD CN
Sbjct: 365 PHECPGLPDVWGDEFNKLYIKYEEEKRYKRQIVARDLWTAILKAQVETGTPYMLYKDHCN 424

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI++Y+S +EVAVCNLASIA+NM+++   + YNF KLK+V K
Sbjct: 425 RKSNQQNLGTIKSSNLCTEIIQYSSPNEVAVCNLASIAVNMFVDVETQYYNFLKLKEVVK 484

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V KNL+KIID+N YP+ EA  SN+ HRP+GIGVQGLAD F+ MR PF+  E++ LN QI
Sbjct: 485 TVAKNLDKIIDLNHYPLIEAEKSNLMHRPVGIGVQGLADAFLLMRYPFESKEAQQLNIQI 544

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+GALEASCE+A  +GPY +Y GSPVS+GILQYDMW VTPT+LWDWAALK KIAK+
Sbjct: 545 FETLYFGALEASCELAKENGPYSSYNGSPVSKGILQYDMWNVTPTNLWDWAALKLKIAKY 604

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEF +VN HLL DL +  LW
Sbjct: 605 GVRNSLLLAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFIIVNPHLLNDLTKRNLW 664

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+++I NNGSIQ++  I Q LK+LYKTVWEIPQK +L MAADRGAFIDQSQS+N++
Sbjct: 665 DDEMKNEIIANNGSIQNVGHITQDLKELYKTVWEIPQKIILKMAADRGAFIDQSQSVNVH 724

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MA+    K++SMHF+GWK GLKTGMYYLRTKPAANA+QFT++K+ +      +       
Sbjct: 725 MAKPTTEKLTSMHFYGWKAGLKTGMYYLRTKPAANALQFTVNKSLLRPHATEEVKEKSNT 784

Query: 571 IQADQEQAMAAMIC 584
           I  ++E   A M+C
Sbjct: 785 IMENKED--ACMMC 796



 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/220 (66%), Positives = 177/220 (80%), Gaps = 2/220 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDWAALK KIAK+GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 579 LQYDMWNVTPTNLWDWAALKLKIAKYGVRNSLLLAPMPTASTAQILGNNESVEPYTSNIY 638

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF +VN HLL DL +  LWDD MK+++I NNGSIQ++  I Q LK+LYKTVWE
Sbjct: 639 TRRVLSGEFIIVNPHLLNDLTKRNLWDDEMKNEIIANNGSIQNVGHITQDLKELYKTVWE 698

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAFIDQSQS+N++MA+    K++SMHF+GWK GLKTGMYYLRTKPAA
Sbjct: 699 IPQKIILKMAADRGAFIDQSQSVNVHMAKPTTEKLTSMHFYGWKAGLKTGMYYLRTKPAA 758

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           NA+QFT++K+ +      +       I  ++E   A M+C
Sbjct: 759 NALQFTVNKSLLRPHATEEVKEKSNTIMENKED--ACMMC 796



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 71/85 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+FL+LKKN GKEE+RAR+LFY LWIPD FM+RV  + +WSLMC
Sbjct: 305 RPGAFALYLEPWHADIFEFLDLKKNIGKEEYRARELFYALWIPDLFMQRVLDNEKWSLMC 364

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY KYE E
Sbjct: 365 PHECPGLPDVWGDEFNKLYIKYEEE 389



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MR PF+  E++ LN QIFET+Y+GALEASCE+A  +GPY +Y GSPVS
Sbjct: 516 IGVQGLADAFLLMRYPFESKEAQQLNIQIFETLYFGALEASCELAKENGPYSSYNGSPVS 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPT+LWDWAALK+    YG++
Sbjct: 576 KGILQYDMWNVTPTNLWDWAALKLKIAKYGVR 607



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GV   +L + AA ++ A +      +AIL ++I   +   L+K+  NRK
Sbjct: 45  ITQCVINGLYPGVKTVELDNLAA-EIAATMTTKHPDYAILAARIVISS---LHKE--NRK 98

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +     EV+++LY +++  T    PMIS+++  II K+ DRLNSAI YDRDF +N+FGFK
Sbjct: 99  TFS---EVMDDLYKVIDPITKEHKPMISEEYNNIIQKHKDRLNSAIDYDRDFVFNYFGFK 155



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL +Q+ETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 401 LWTAILKAQVETGTPYMLYKDHCNRKSNQQNLGTIK 436


>gi|294471323|gb|ADE80908.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/464 (69%), Positives = 400/464 (86%), Gaps = 1/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D  G +F+ LY+KYE +G+++++V A+ LW AI+++Q+ETGTPYMLYKD+CN
Sbjct: 352 PMQSPGLADCHGVEFEALYEKYEKQGRYVKRVSAQTLWRAIIEAQVETGTPYMLYKDSCN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++ P    Y+F +LK++ K
Sbjct: 412 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLKEITK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+IID N  P+ EA  SN R+RPIGIGVQG+AD F+ MR+P++ + +  LNK+I
Sbjct: 472 IVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK KI+K
Sbjct: 532 FETIYYGALEASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISK 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 592 YGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+ ++ NNGS+Q+IE IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+
Sbjct: 652 WNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNV 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           YMAE +Y K++S+HF+ W +GLKTGMYYLRTKPA NAIQFT+DK
Sbjct: 712 YMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPAVNAIQFTVDK 755



 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 133/190 (70%), Positives = 166/190 (87%), Gaps = 1/190 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW G TP++LWDW+ LK KI+K+G+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 566 LQYDMWNGATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D MK+ ++ NNGS+Q+IE IP +++ LYKTVW
Sbjct: 626 YQRRVLSGEFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T++ MAADRGAFIDQSQS N+YMAE +Y K++S+HF+ W +GLKTGMYYLRTKPA
Sbjct: 686 EMSMRTMIRMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWNMGLKTGMYYLRTKPA 745

Query: 948 ANAIQFTIDK 957
            NAIQFT+DK
Sbjct: 746 VNAIQFTVDK 755



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D  G +F+ LY+KYE +G
Sbjct: 352 PMQSPGLADCHGVEFEALYEKYEKQG 377



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I A+Q     A    + N+   IGVQG+AD F+ MR+P++ + +  LNK+IFETIYYGAL
Sbjct: 481 IDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKIFETIYYGAL 540

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           EASCE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK     YGL+
Sbjct: 541 EASCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLR 595



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 43/55 (78%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             VI ++Y  ++++TG  TPMI D HY II  NADRLNSAI++DRDFNY++FGFK
Sbjct: 94  FNVIVDMYEAIDQKTGAATPMIPDFHYGIIAANADRLNSAIMHDRDFNYDYFGFK 148



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 388 LWRAIIEAQVETGTPYMLYKDSCNRKSNQSNLGTIK 423


>gi|15617495|ref|NP_258291.1| RR1 [Spodoptera litura NPV]
 gi|15553231|gb|AAL01709.1|AF325155_21 ribonucleotide reductase [Spodoptera litura NPV]
          Length = 770

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/465 (70%), Positives = 401/465 (86%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+D+ WSLMC
Sbjct: 296 RPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D +G +FD LY+KYE EG+++R+V A+ +W AI++SQ+ETGTPYMLYKD+CN
Sbjct: 356 PMQSPGLADCYGAEFDALYQKYEEEGRYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++  +   Y+F KLK + K
Sbjct: 416 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVVQSG-VYDFEKLKKITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+ ID N+YP+ EA+ SN+++RPIGIGVQG+AD F+ MR+P++   +  LNK+I
Sbjct: 475 IVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA  GPY+TYEGSP S+G+LQYDMW  VTP+DLWDW+ LK KI+K
Sbjct: 535 FETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWDNVTPSDLWDWSMLKSKISK 594

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 595 HGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTAIGL 654

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D +K+ +I NNGS+Q IE IP +++ LYKTVWE+  +T+++MAADRGAFIDQSQS N+
Sbjct: 655 WNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQSFNV 714

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           YM   +Y K++S+HF+ WK+GLKTGMYYLRTKPAANAIQFT+DKT
Sbjct: 715 YMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 167/191 (87%), Gaps = 1/191 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW  VTP+DLWDW+ LK KI+KHG+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 569 LQYDMWDNVTPSDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 628

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D +K+ +I NNGS+Q IE IP +++ LYKTVW
Sbjct: 629 YQRRVLSGEFQVVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVW 688

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T+++MAADRGAFIDQSQS N+YM   +Y K++S+HF+ WK+GLKTGMYYLRTKPA
Sbjct: 689 EMSMRTLINMAADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPA 748

Query: 948 ANAIQFTIDKT 958
           ANAIQFT+DKT
Sbjct: 749 ANAIQFTVDKT 759



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+D+ WSLMC
Sbjct: 296 RPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D +G +FD LY+KYE EG
Sbjct: 356 PMQSPGLADCYGAEFDALYQKYEEEG 381



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +    N+   IGVQG+AD F+ MR+P++   +  LNK+IFETIYYGALEASCE+AA  
Sbjct: 494 AKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYYGALEASCELAAIY 553

Query: 641 GPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSP S+G+LQYDMW  VTP+DLWDW+ LK     +GL+
Sbjct: 554 GPYETYEGSPASRGVLQYDMWDNVTPSDLWDWSMLKSKISKHGLR 598



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 48/63 (76%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++     +VI ++Y  ++ +TG +TPMIS+ HY II  NA RLNSAI++DRDFNY++F
Sbjct: 90  HKETKDSFFDVIIDMYEAIDPKTGVKTPMISNFHYNIIAANAYRLNSAIVHDRDFNYDYF 149

Query: 768 GFK 770
           GFK
Sbjct: 150 GFK 152



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V+   +W AI++SQ+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 387 VHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQSNLGTIK 427


>gi|294471329|gb|ADE80913.1| RR1 [Spodoptera litura NPV]
          Length = 770

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/465 (70%), Positives = 401/465 (86%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+D+ WSLMC
Sbjct: 296 RPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D +G +FD LY+KYE EG+++R+V A+ +W AI++SQ+ETGTPYMLYKD+CN
Sbjct: 356 PMQSPGLADCYGAEFDALYQKYEEEGRYVRRVHAQTMWRAIIESQVETGTPYMLYKDSCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++  +   Y+F KLK + K
Sbjct: 416 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVLQSG-VYDFEKLKKITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+ ID N+YP+ EA+ SN+++RPIGIGVQG+AD F+ MR+P++   +  LNK+I
Sbjct: 475 IVTRNLNRTIDSNWYPLPEAKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA  GPY+TYEGSP S+G+LQYDMW  VTP+DLWDW+ LK KI+K
Sbjct: 535 FETIYYGALEASCELAAIYGPYETYEGSPASRGVLQYDMWDNVTPSDLWDWSMLKSKISK 594

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 595 HGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLTAIGL 654

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D +K+ +I NNGS+Q IE IP +++ LYKTVWE+  +T+++MAADRGAFIDQSQS N+
Sbjct: 655 WNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVWEMSMRTLINMAADRGAFIDQSQSFNV 714

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           YM   +Y K++S+HF+ WK+GLKTGMYYLRTKPAANAIQFT+DKT
Sbjct: 715 YMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAANAIQFTVDKT 759



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/191 (71%), Positives = 167/191 (87%), Gaps = 1/191 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW  VTP+DLWDW+ LK KI+KHG+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 569 LQYDMWDNVTPSDLWDWSMLKSKISKHGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 628

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D +K+ +I NNGS+Q IE IP +++ LYKTVW
Sbjct: 629 YQRRVLSGEFQVVNRHLVKDLTAIGLWNDTIKNLIIHNNGSVQRIESIPLEIRQLYKTVW 688

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T+++MAADRGAFIDQSQS N+YM   +Y K++S+HF+ WK+GLKTGMYYLRTKPA
Sbjct: 689 EMSMRTLINMAADRGAFIDQSQSFNVYMDLPSYGKLTSIHFYAWKMGLKTGMYYLRTKPA 748

Query: 948 ANAIQFTIDKT 958
           ANAIQFT+DKT
Sbjct: 749 ANAIQFTVDKT 759



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+D+ WSLMC
Sbjct: 296 RPGAFAVYLEPWHADVLDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVENDSMWSLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D +G +FD LY+KYE EG
Sbjct: 356 PMQSPGLADCYGAEFDALYQKYEEEG 381



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +    N+   IGVQG+AD F+ MR+P++   +  LNK+IFETIYYGALEASCE+AA  
Sbjct: 494 AKVSNLKNRPIGIGVQGMADAFVMMRMPYESVAAAELNKKIFETIYYGALEASCELAAIY 553

Query: 641 GPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSP S+G+LQYDMW  VTP+DLWDW+ LK     +GL+
Sbjct: 554 GPYETYEGSPASRGVLQYDMWDNVTPSDLWDWSMLKSKISKHGLR 598



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 48/63 (76%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++     +VI ++Y  ++ +TG +TPMIS+ HY II  NA RLNSAI++DRDFNY++F
Sbjct: 90  HKETKDSFFDVIIDMYEAIDPKTGVKTPMISNFHYNIIAANAYRLNSAIVHDRDFNYDYF 149

Query: 768 GFK 770
           GFK
Sbjct: 150 GFK 152



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V+   +W AI++SQ+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 387 VHAQTMWRAIIESQVETGTPYMLYKDSCNRKSNQSNLGTIK 427


>gi|71020483|ref|XP_760472.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
 gi|46100377|gb|EAK85610.1| hypothetical protein UM04325.1 [Ustilago maydis 521]
          Length = 1117

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/472 (69%), Positives = 397/472 (84%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 525 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 584

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YEAEG+  R V A+KLW+AIL+SQ ETG P++LYKDA N
Sbjct: 585 PNECPGLADCYGDEFERLYERYEAEGRSKRTVKAQKLWYAILESQTETGNPFILYKDAAN 644

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+EY++ DEVAVCNLASIAL  +I+P  KTY+F +L  VAK
Sbjct: 645 RKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKTYDFKRLHSVAK 704

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNKIID+N+YPVEEAR SNMRHRPIGIGVQGLAD F+ M   F+  E+R LN QI
Sbjct: 705 AICKNLNKIIDINYYPVEEARKSNMRHRPIGIGVQGLADAFMIMGYAFESAEARRLNVQI 764

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE SCE+A + G Y+TY GSP SQG LQYDMWGVTP+DLWDWA LK KIAKH
Sbjct: 765 FETIYHAALERSCELAEQHGSYETYAGSPASQGELQYDMWGVTPSDLWDWAELKAKIAKH 824

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LLR+LVE GLW
Sbjct: 825 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLRELVEQGLW 884

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ++ GIP ++K LYKTVWEI QK ++DMAADRGAFI QSQSLNI+
Sbjct: 885 NDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAIIDMAADRGAFICQSQSLNIH 944

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           ++   + +++SMHF+GWK GLKTG YYLRTKPA+NAIQFT+   ++  A A+
Sbjct: 945 LSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAIQFTLSVAEVNEAKAA 996



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/198 (69%), Positives = 169/198 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDWA LK KIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 799 LQYDMWGVTPSDLWDWAELKAKIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 858

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LLR+LVE GLW+D MK+++I + GSIQ++ GIP ++K LYKTVWE
Sbjct: 859 SRRVLAGEFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWE 918

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAFI QSQSLNI+++   + +++SMHF+GWK GLKTG YYLRTKPA+
Sbjct: 919 ISQKAIIDMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPAS 978

Query: 949 NAIQFTIDKTKMANAMAS 966
           NAIQFT+   ++  A A+
Sbjct: 979 NAIQFTLSVAEVNEAKAA 996



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 525 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 584

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY++YEAEG
Sbjct: 585 PNECPGLADCYGDEFERLYERYEAEG 610



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M   F+  E+R LN QIFETIY+ ALE SCE+A + G Y+TY GSP S
Sbjct: 736 IGVQGLADAFMIMGYAFESAEARRLNVQIFETIYHAALERSCELAEQHGSYETYAGSPAS 795

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWGVTP+DLWDWA LK     +GL+
Sbjct: 796 QGELQYDMWGVTPSDLWDWAELKAKIAKHGLR 827



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +++ +++    GVT  +L + AA +  A        +A+L ++I       L+K+     
Sbjct: 271 ITRKVIEGIYEGVTTVELDNLAA-ETAAYKTTTHPDYAVLAARIAISN---LHKETSKNF 326

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +V++ LY  VN + G  +PMISD  Y+++M++ D+L+SAIIY+RDF+YNFFGFK
Sbjct: 327 S-----QVVQALYEYVNPKNGRHSPMISDATYKVVMEHKDQLDSAIIYERDFHYNFFGFK 381



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL+SQ ETG P++LYKDA NRKSNQ+NL  I+
Sbjct: 616 VKAQKLWYAILESQTETGNPFILYKDAANRKSNQKNLGTIK 656


>gi|388855438|emb|CCF50884.1| probable RNR1-ribonucleoside-diphosphate reductase large subunit
           [Ustilago hordei]
          Length = 892

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/477 (68%), Positives = 400/477 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YEAEG+  R V A+KLW+AIL+SQ ETG P++LYKDA N
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEGRCKRTVKAQKLWYAILESQTETGNPFILYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+EY++ DEVAVCNLASIAL  +I+P  K Y+F +L +VAK
Sbjct: 414 RKSNQKNLGTIKCSNLCTEIIEYSAPDEVAVCNLASIALPTFIDPVTKVYDFKRLHEVAK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNKIID+N+YPVEEAR SNMRHRPIGIGVQGLAD F+ M   F+  E+R LN QI
Sbjct: 474 AICKNLNKIIDINYYPVEEARRSNMRHRPIGIGVQGLADAFMIMGYAFESPEARRLNVQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE SCE+A   G Y+TY+GSP SQG LQYDMWGVTP+DLWDWA+LK  IAKH
Sbjct: 534 FETIYHAALERSCELAQEHGTYETYQGSPASQGELQYDMWGVTPSDLWDWASLKANIAKH 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LLR+LVE GLW
Sbjct: 594 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLRELVEQGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ++ GIP ++K LYKTVWEI QK ++DMAADRGAFI QSQSLNI+
Sbjct: 654 NDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAIIDMAADRGAFICQSQSLNIH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           ++   + +++SMHF+GWK GLKTG YYLRTKPA+NA+QFT+   ++  A A+ + RS
Sbjct: 714 LSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAVQFTLSVAEVNEAKAAANKRS 770



 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 138/203 (67%), Positives = 172/203 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDWA+LK  IAKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDMWGVTPSDLWDWASLKANIAKHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LLR+LVE GLW+D MK+++I + GSIQ++ GIP ++K LYKTVWE
Sbjct: 628 SRRVLAGEFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAFI QSQSLNI+++   + +++SMHF+GWK GLKTG YYLRTKPA+
Sbjct: 688 ISQKAIIDMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPAS 747

Query: 949 NAIQFTIDKTKMANAMASKDTRS 971
           NA+QFT+   ++  A A+ + RS
Sbjct: 748 NAVQFTLSVAEVNEAKAAANKRS 770



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY++YEAEG
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEG 379



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M   F+  E+R LN QIFETIY+ ALE SCE+A   G Y+TY+GSP S
Sbjct: 505 IGVQGLADAFMIMGYAFESPEARRLNVQIFETIYHAALERSCELAQEHGTYETYQGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWGVTP+DLWDWA+LK     +GL+
Sbjct: 565 QGELQYDMWGVTPSDLWDWASLKANIAKHGLR 596



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 50/63 (79%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++++   +V+++LY  VN +    +PMISD  Y+++M++ D+L+SAIIY+RDF+YNFF
Sbjct: 88  HKETSKNFSQVVQDLYEYVNPKNRRHSPMISDATYKVVMQHKDQLDSAIIYERDFHYNFF 147

Query: 768 GFK 770
           GFK
Sbjct: 148 GFK 150



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL+SQ ETG P++LYKDA NRKSNQ+NL  I+
Sbjct: 385 VKAQKLWYAILESQTETGNPFILYKDAANRKSNQKNLGTIK 425


>gi|294471336|gb|ADE80919.1| RR1 [Spodoptera litura NPV]
          Length = 778

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/464 (69%), Positives = 399/464 (85%), Gaps = 1/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D  G +F+ LY+KYE +G+++++V A+ LW AI+++Q+ETGTPYMLYKD+CN
Sbjct: 352 PMQSPGLADCHGVEFEALYEKYEKQGRYVKRVSAQTLWRAIIEAQVETGTPYMLYKDSCN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++ P    Y+F +LK++ K
Sbjct: 412 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLKEITK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLN+IID N  P+ EA  SN R+RPIGIGVQG+AD F+ MR+P++ + +  LNK+I
Sbjct: 472 IVTRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETIYYGALEASCE+AA+DGPY+TY+GS  S+G LQYDMW G TP++LWDW+ LK KI+K
Sbjct: 532 FETIYYGALEASCELAAKDGPYETYKGSRASRGELQYDMWNGATPSNLWDWSLLKSKISK 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 592 YGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+ ++ NNGS+Q+IE IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+
Sbjct: 652 WNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNV 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA NAIQFT+DK
Sbjct: 712 YMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNAIQFTVDK 755



 Score =  302 bits (774), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 167/190 (87%), Gaps = 1/190 (0%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YDMW G TP++LWDW+ LK KI+K+G+RNSLL+APMPTASTAQILGNNESFEP+TSNI
Sbjct: 566 LQYDMWNGATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQILGNNESFEPFTSNI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEFQVVN HL++DL  +GLW+D MK+ ++ NNGS+Q+IE IP +++ LYKTVW
Sbjct: 626 YQRRVLSGEFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+  +T++ MAADRGAFIDQSQS N+YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA
Sbjct: 686 EMSMRTMIRMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPA 745

Query: 948 ANAIQFTIDK 957
            NAIQFT+DK
Sbjct: 746 VNAIQFTVDK 755



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+ DFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVSDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D  G +F+ LY+KYE +G
Sbjct: 352 PMQSPGLADCHGVEFEALYEKYEKQG 377



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I A+Q     A    + N+   IGVQG+AD F+ MR+P++ + +  LNK+IFETIYYGAL
Sbjct: 481 IDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPYESDAAAELNKKIFETIYYGAL 540

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           EASCE+AA+DGPY+TY+GS  S+G LQYDMW G TP++LWDW+ LK     YGL+
Sbjct: 541 EASCELAAKDGPYETYKGSRASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLR 595



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             VI ++Y  ++++TG  TPMISD HY II  NADRLNSAI++DRDFNY++FGFK
Sbjct: 94  FNVIVDMYEAIDQKTGAATPMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFK 148



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 388 LWRAIIEAQVETGTPYMLYKDSCNRKSNQSNLGTIK 423


>gi|443896993|dbj|GAC74335.1| hypothetical protein PANT_11d00009 [Pseudozyma antarctica T-34]
          Length = 1291

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/472 (69%), Positives = 397/472 (84%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YEAEG+  R V A+KLW+AIL+SQ ETG P++LYKDA N
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEGRSKRTVKAQKLWYAILESQTETGNPFILYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+EY+S DEVAVCNLASIAL  +I+P  KTY+F +L  VAK
Sbjct: 414 RKSNQKNLGTIKCSNLCTEIIEYSSPDEVAVCNLASIALPTFIDPVSKTYDFKRLHSVAK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNKIID+N+YPVEEAR SNMRHRPIGIGVQGLAD F+ M   F+  E+R LN QI
Sbjct: 474 AICKNLNKIIDINYYPVEEARRSNMRHRPIGIGVQGLADAFMIMGYAFESPEARKLNVQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE SCE+A + G Y+TY GSP SQG LQYDMWGVTP+DLWDWA LK KIA+H
Sbjct: 534 FETIYHAALERSCELAQQHGTYETYAGSPASQGELQYDMWGVTPSDLWDWAELKAKIAQH 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LLR+LVE GLW
Sbjct: 594 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLRELVEQGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ++ GIP ++K LYKTVWEI QK ++DMAADRGAFI QSQSLNI+
Sbjct: 654 NDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWEISQKAIIDMAADRGAFICQSQSLNIH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           ++   + +++SMHF+GWK GLKTG YYLRTKPA+NA+QFT+   ++  A A+
Sbjct: 714 LSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPASNAVQFTLSVAEVNEAKAA 765



 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 169/198 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDWA LK KIA+HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDMWGVTPSDLWDWAELKAKIAQHGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LLR+LVE GLW+D MK+++I + GSIQ++ GIP ++K LYKTVWE
Sbjct: 628 SRRVLAGEFQVVNPWLLRELVEQGLWNDTMKNRIIAHGGSIQNVPGIPDRIKKLYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAFI QSQSLNI+++   + +++SMHF+GWK GLKTG YYLRTKPA+
Sbjct: 688 ISQKAIIDMAADRGAFICQSQSLNIHLSAPTFGQLTSMHFYGWKKGLKTGTYYLRTKPAS 747

Query: 949 NAIQFTIDKTKMANAMAS 966
           NA+QFT+   ++  A A+
Sbjct: 748 NAVQFTLSVAEVNEAKAA 765



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RAR+LFY LW+PD FM+RVE +  WSLMC
Sbjct: 294 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARELFYALWVPDLFMKRVEQNGDWSLMC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY++YEAEG
Sbjct: 354 PNECPGLADCYGDEFERLYERYEAEG 379



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M   F+  E+R LN QIFETIY+ ALE SCE+A + G Y+TY GSP S
Sbjct: 505 IGVQGLADAFMIMGYAFESPEARKLNVQIFETIYHAALERSCELAQQHGTYETYAGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWGVTP+DLWDWA LK     +GL+
Sbjct: 565 QGELQYDMWGVTPSDLWDWAELKAKIAQHGLR 596



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 50/63 (79%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++++   +V++ LY+ +N + G  +PMISD  Y+++M + D+L+SAIIY+RDF+YNFF
Sbjct: 88  HKETSKNFSQVVQALYDYINPKNGRHSPMISDATYKVVMAHKDQLDSAIIYERDFHYNFF 147

Query: 768 GFK 770
           GFK
Sbjct: 148 GFK 150



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL+SQ ETG P++LYKDA NRKSNQ+NL  I+
Sbjct: 385 VKAQKLWYAILESQTETGNPFILYKDAANRKSNQKNLGTIK 425


>gi|193669060|ref|XP_001942710.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 1 [Acyrthosiphon pisum]
 gi|328715730|ref|XP_003245707.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           isoform 2 [Acyrthosiphon pisum]
          Length = 802

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/504 (65%), Positives = 404/504 (80%), Gaps = 12/504 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH D++ + EL+KNTG +E + RDLF  LWIPDEFMRRVE+D  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEADQSWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GLSD WG+ F  LYKKYE E ++ RQV AR+LWF I+ SQIETG PY+LYKDACN
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDEKRYNRQVSARELWFRIITSQIETGMPYVLYKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEI++YTS +EVAVCNLASIA+NM++ P +  Y+F KL  + K
Sbjct: 424 SKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKP-NGEYDFEKLLKITK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++IDVNFYPV EA  SN RHRP+GIGVQGLADLF+ MR PF   ESR LN QI
Sbjct: 483 IVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPFGSPESRKLNSQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A + G Y +Y+GSP+SQGILQYDMW V PTDLWDW  LKEKIAKH
Sbjct: 543 FETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNVKPTDLWDWDILKEKIAKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y RR LSGEF VVN HLL DL++L LW
Sbjct: 603 GVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEFSVVNRHLLNDLIKLNLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++M+++LI   GS+Q I+ IP  +K+LYKT WE+ QK +LDMAADR AFIDQSQSLNI+
Sbjct: 663 NEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQKIILDMAADRAAFIDQSQSLNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + +    K+SS+HF+GWK GLKTGMYYLRT+PAA+ IQFT++K+ +++ +A         
Sbjct: 723 IEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVNKSTLSSNIA--------- 773

Query: 571 IQADQEQA--MAAMICRRDNKEDC 592
           IQ ++  A  M  ++C  +NK+ C
Sbjct: 774 IQTEKNDALSMQELVCSLENKDAC 797



 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 179/230 (77%), Gaps = 11/230 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES EPYT+N+Y
Sbjct: 577 LQYDMWNVKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR LSGEF VVN HLL DL++L LW+++M+++LI   GS+Q I+ IP  +K+LYKT WE
Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK +LDMAADR AFIDQSQSLNI++ +    K+SS+HF+GWK GLKTGMYYLRT+PAA
Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA--MAAMICRRDNKEDC 996
           + IQFT++K+ +++ +A         IQ ++  A  M  ++C  +NK+ C
Sbjct: 757 DPIQFTVNKSTLSSNIA---------IQTEKNDALSMQELVCSLENKDAC 797



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLF+ MR PF   ESR LN QIFET+YYGALEASCE+A + G Y +Y+GSP+S
Sbjct: 514 IGVQGLADLFLLMRFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPIS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDW  LK     +G++
Sbjct: 574 QGILQYDMWNVKPTDLWDWDILKEKIAKHGVR 605



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH D++ + EL+KNTG +E + RDLF  LWIPDEFMRRVE+D  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEADQSWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P  C GLSD WG+ F  LYKKYE E
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDE 388



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           FA+L ++I       LYK+  N  S     +VI +LYNM N+    R  +ISD HY ++M
Sbjct: 85  FAVLAARIAISN---LYKETKNNFS-----DVIYDLYNMSNERNQRRMKIISDFHYGVVM 136

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K+ADRLN+AI +DRD+ Y++FGFK
Sbjct: 137 KHADRLNNAIKHDRDYTYSYFGFK 160



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF I+ SQIETG PY+LYKDACN KSNQ+NL  I+
Sbjct: 395 VSARELWFRIITSQIETGMPYVLYKDACNSKSNQKNLGTIK 435


>gi|301792342|ref|XP_002931138.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like,
           partial [Ailuropoda melanoleuca]
          Length = 477

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/480 (70%), Positives = 403/480 (83%), Gaps = 7/480 (1%)

Query: 114 KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYE 173
           KNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMCPN C GL + WGE+F+ LY+ YE
Sbjct: 1   KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60

Query: 174 AEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEY 233
            +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNLGTIKCSNLCTEIVEY
Sbjct: 61  KQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEY 120

Query: 234 TSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNS 293
           TSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K++ +NLNKIID+N+YPV EA  S
Sbjct: 121 TSKDEVAVCNLASVALNMYVT-SEHTYDFKKLAEVTKVIVRNLNKIIDINYYPVPEACLS 179

Query: 294 NMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQ 353
           N RHRPIGIGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   GPY+
Sbjct: 180 NKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREHGPYE 239

Query: 354 TYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
           TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNN
Sbjct: 240 TYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNN 299

Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
           ES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP 
Sbjct: 300 ESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPD 359

Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT 533
            LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKT
Sbjct: 360 DLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKT 419

Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           GMYYLRT+PAAN IQFT++K K+ +   +         + ++E+  AAM+C  +N+E+C+
Sbjct: 420 GMYYLRTRPAANPIQFTLNKEKLKDKEKATKE------EEEKERNTAAMVCSLENREECL 473



 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 251 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 310

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 311 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 370

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 371 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 430

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +         + ++E+  AAM+C  +N+E+CL
Sbjct: 431 NPIQFTLNKEKLKDKEKATKE------EEEKERNTAAMVCSLENREECL 473



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 176 ACLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAREH 235

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 236 GPYETYEGSPVSRGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 279



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 52/65 (80%)

Query: 24 KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE 83
          KNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMCPN C GL + WGE+F+ LY+ YE
Sbjct: 1  KNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYESYE 60

Query: 84 AEGLV 88
           +G V
Sbjct: 61 KQGRV 65



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 64  RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 109


>gi|384493683|gb|EIE84174.1| ribonucleoside-diphosphate reductase large chain [Rhizopus delemar
           RA 99-880]
          Length = 757

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/507 (65%), Positives = 413/507 (81%), Gaps = 12/507 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF FL+L+KN GK+E RARDLFY LW+PD FM+RV+    WSL C
Sbjct: 263 RPGAFAMYLEPWHADIFTFLDLRKNFGKDEIRARDLFYALWVPDLFMQRVKDGGDWSLFC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D WG++F  LY+ YE EG+    + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 323 PNEAPGLQDVWGDEFVALYESYEREGRARETIKAQKLWYAILEAQTETGNPFMLYKDACN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS DEVAVCNLASIAL  ++    ++Y+F +L +VAK
Sbjct: 383 RKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIALPTFV-INRESYDFKRLHEVAK 441

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIID+N+YPV EA  SN RHRPIG+GVQGLAD F+ +R PFD  E++ LN QI
Sbjct: 442 VITRNLNKIIDINYYPVIEAERSNKRHRPIGLGVQGLADTFMALRYPFDSPEAKQLNIQI 501

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A + GPY+TYEGSPVS+GILQYDMW VTPT LWDWA+LKEKIAKH
Sbjct: 502 FETIYHAALEASCELAEKYGPYETYEGSPVSKGILQYDMWNVTPTSLWDWASLKEKIAKH 561

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+Q+LG NE FEPYTSN Y+RRVLSGE+Q+VN  LLRDLV++G+W
Sbjct: 562 GVRNSLLLAPMPTASTSQMLGFNECFEPYTSNFYTRRVLSGEYQMVNPWLLRDLVDMGIW 621

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K+ ++ + GS+Q++  IPQ LK+LYKTVWEI Q+T++DMAADRGA+IDQSQSLNI+
Sbjct: 622 NDEVKNMIMADGGSVQNVPTIPQHLKELYKTVWEISQRTIVDMAADRGAYIDQSQSLNIF 681

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE N+ K++SMHF+GW+ GLKTGMYYLRT+PA +AI+FT+D+  +      ++ R + E
Sbjct: 682 IAEPNFGKLTSMHFYGWQKGLKTGMYYLRTRPAVDAIKFTVDQVSL------REYRKKME 735

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
                E+  A M+C  DNK+ C+   G
Sbjct: 736 -----EKNQADMVCSIDNKDACMSCSG 757



 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 187/229 (81%), Gaps = 11/229 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT LWDWA+LKEKIAKHGVRNSLL+APMPTAST+Q+LG NE FEPYTSN Y
Sbjct: 536 LQYDMWNVTPTSLWDWASLKEKIAKHGVRNSLLLAPMPTASTSQMLGFNECFEPYTSNFY 595

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGE+Q+VN  LLRDLV++G+W+D +K+ ++ + GS+Q++  IPQ LK+LYKTVWE
Sbjct: 596 TRRVLSGEYQMVNPWLLRDLVDMGIWNDEVKNMIMADGGSVQNVPTIPQHLKELYKTVWE 655

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQSLNI++AE N+ K++SMHF+GW+ GLKTGMYYLRT+PA 
Sbjct: 656 ISQRTIVDMAADRGAYIDQSQSLNIFIAEPNFGKLTSMHFYGWQKGLKTGMYYLRTRPAV 715

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D+  +      ++ R + E     E+  A M+C  DNK+ C+
Sbjct: 716 DAIKFTVDQVSL------REYRKKME-----EKNQADMVCSIDNKDACM 753



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 3/137 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PFD  E++ LN QIFETIY+ ALEASCE+A + GPY+TYEGSPVS
Sbjct: 473 LGVQGLADTFMALRYPFDSPEAKQLNIQIFETIYHAALEASCELAEKYGPYETYEGSPVS 532

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR--K 710
           +GILQYDMW VTPT LWDWA+LK     +G++    +L       T  ML  + C     
Sbjct: 533 KGILQYDMWNVTPTSLWDWASLKEKIAKHGVRNSL-LLAPMPTASTSQMLGFNECFEPYT 591

Query: 711 SNQQNLEVIEELYNMVN 727
           SN     V+   Y MVN
Sbjct: 592 SNFYTRRVLSGEYQMVN 608



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF FL+L+KN GK+E RARDLFY LW+PD FM+RV+    WSL C
Sbjct: 263 RPGAFAMYLEPWHADIFTFLDLRKNFGKDEIRARDLFYALWVPDLFMQRVKDGGDWSLFC 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL D WG++F  LY+ YE EG
Sbjct: 323 PNEAPGLQDVWGDEFVALYESYEREG 348



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +      +A+L ++I             +++
Sbjct: 9   ITQKVISGVYEGVTTVELDNLAA-ETAAYMTTRHPDYALLAARIAISN--------LHKE 59

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +VIE+LYN VN +T   +PMISD  Y+++  NA+RLNSAIIYDRDF YNFFGFK
Sbjct: 60  TKKVFSQVIEDLYNYVNPKTNKHSPMISDTTYKVVQDNAERLNSAIIYDRDFKYNFFGFK 119



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETG P+MLYKDACNRKSNQQNL  I+
Sbjct: 358 KLWYAILEAQTETGNPFMLYKDACNRKSNQQNLGTIK 394


>gi|403418237|emb|CCM04937.1| predicted protein [Fibroporia radiculosa]
          Length = 958

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/463 (71%), Positives = 392/463 (84%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 371 RPGAFAIYLEPWHDDIFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGKWSLFC 430

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WG +F+ LY++YE+EG+  R + A+KLW+AILD+QIETG P+MLYKDACN
Sbjct: 431 PNEAPGLHEVWGAEFETLYERYESEGRARRTIDAQKLWYAILDAQIETGNPFMLYKDACN 490

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTIK SNLCTEIVEY+S DE AVCNLAS+AL   I      YNF +L DVAK
Sbjct: 491 AKSNQRHLGTIKSSNLCTEIVEYSSPDETAVCNLASVALPSCIEGGR--YNFQRLHDVAK 548

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN+II+VN+YPV EAR SNMRHRPIG+GV GLAD F+ +R+PFD  E+R LNKQI
Sbjct: 549 VVTFNLNRIIEVNYYPVPEARRSNMRHRPIGVGVNGLADAFMALRMPFDSPEARELNKQI 608

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIAA DGPY+TYEGSP S+G LQYDMWGVTP+DLWDWA+LK+KIAKH
Sbjct: 609 FETIYHAALEASCEIAAVDGPYETYEGSPASRGELQYDMWGVTPSDLWDWASLKDKIAKH 668

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+V   LLR+LV+  LW
Sbjct: 669 GLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYTRRVLAGEFQIVCPWLLRELVDRKLW 728

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+Q+I NNGS+Q+I GIP  +K +YKTVWEI QK VLDMAADRGAFI QSQSLN++
Sbjct: 729 DDEMKNQIIANNGSVQNISGIPDDIKAIYKTVWEISQKKVLDMAADRGAFICQSQSLNVH 788

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D+
Sbjct: 789 LQSPTTPQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQ 831



 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/189 (71%), Positives = 164/189 (86%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDWA+LK+KIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 643 LQYDMWGVTPSDLWDWASLKDKIAKHGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIY 702

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+V   LLR+LV+  LWDD MK+Q+I NNGS+Q+I GIP  +K +YKTVWE
Sbjct: 703 TRRVLAGEFQIVCPWLLRELVDRKLWDDEMKNQIIANNGSVQNISGIPDDIKAIYKTVWE 762

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDMAADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 763 ISQKKVLDMAADRGAFICQSQSLNVHLQSPTTPQLTSMHFYGWKKGLKTGMYYLRTRPAA 822

Query: 949 NAIQFTIDK 957
            AIQFT+D+
Sbjct: 823 QAIQFTVDQ 831



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 77/92 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PFD  E+R LNKQIFETIY+ ALEASCEIAA DGPY+TYEGSP S
Sbjct: 580 VGVNGLADAFMALRMPFDSPEARELNKQIFETIYHAALEASCEIAAVDGPYETYEGSPAS 639

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMWGVTP+DLWDWA+LK     +GL+
Sbjct: 640 RGELQYDMWGVTPSDLWDWASLKDKIAKHGLR 671



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 371 RPGAFAIYLEPWHDDIFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGKWSLFC 430

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WG +F+ LY++YE+EG
Sbjct: 431 PNEAPGLHEVWGAEFETLYERYESEG 456



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 11/121 (9%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +      +AIL ++I     +         K
Sbjct: 117 ITQKVIAGVYQGVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAVSNLH---------K 166

Query: 711 SNQQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGF 769
             ++N   VI +LYN VN + G    MIS + Y+++M NA+ L+SAIIYDRDFNYNFFGF
Sbjct: 167 ETKKNFSAVISDLYNYVNPKNGRPAGMISKQTYDVVMANAETLDSAIIYDRDFNYNFFGF 226

Query: 770 K 770
           K
Sbjct: 227 K 227



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AILD+QIETG P+MLYKDACN KSNQ++L  I+
Sbjct: 466 KLWYAILDAQIETGNPFMLYKDACNAKSNQRHLGTIK 502


>gi|395330811|gb|EJF63193.1| ribonucleotide reductase alpha subunit [Dichomitus squalens
           LYAD-421 SS1]
          Length = 894

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/477 (68%), Positives = 400/477 (83%), Gaps = 2/477 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVES  +WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESGGKWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WGE+F+ LY++YE EG+  + + A+KLW+AIL+SQIETG P+MLYKDA N
Sbjct: 354 PSEAPGLHEVWGEEFEALYEQYEREGRARKTIDAQKLWYAILESQIETGGPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EY++ DE AVCNLASIAL  +I   +  YNF KL DVAK
Sbjct: 414 RKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASIALPSFIE--NGKYNFQKLHDVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YP+ EAR SNMRHRPIGIGVQGLAD F+ +R+PFD  E+RLLN QI
Sbjct: 472 VVAFNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSVEARLLNLQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIY+ A+EASCE+A +DGPY+TY+GSP SQG LQYD+WGVTPTDLWDWA+LK K+A+H
Sbjct: 532 AETIYHAAVEASCEMAQKDGPYETYQGSPASQGKLQYDLWGVTPTDLWDWASLKAKVAQH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LVELGLW
Sbjct: 592 GLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVELGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+ +I NNGS+Q+I+ IP+ +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 652 NDDMKNMIIANNGSVQNIDIIPEDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AI+FT+D + + NA     A++
Sbjct: 712 LQSPTNGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIKFTVDSSYLKNAAKKTQAKA 768



 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/204 (68%), Positives = 176/204 (86%), Gaps = 2/204 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPTDLWDWA+LK K+A+HG+RNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 LQYDLWGVTPTDLWDWASLKAKVAQHGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LVELGLW+D+MK+ +I NNGS+Q+I+ IP+ +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVELGLWNDDMKNMIIANNGSVQNIDIIPEDVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVLDLAADRGAFICQSQSLNVHLQSPTNGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ 972
            AI+FT+D + + N  A+K T+++
Sbjct: 746 QAIKFTVDSSYLKN--AAKKTQAK 767



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 77/92 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD  E+RLLN QI ETIY+ A+EASCE+A +DGPY+TY+GSP S
Sbjct: 503 IGVQGLADAFMALRMPFDSVEARLLNLQIAETIYHAAVEASCEMAQKDGPYETYQGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYD+WGVTPTDLWDWA+LK     +GL+
Sbjct: 563 QGKLQYDLWGVTPTDLWDWASLKAKVAQHGLR 594



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVES  +WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESGGKWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WGE+F+ LY++YE EG
Sbjct: 354 PSEAPGLHEVWGEEFEALYEQYEREG 379



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 11/121 (9%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GVT  +L + AA +  A +      +AIL ++I     +         K
Sbjct: 40  VAQKVIAGVYAGVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAVSNLH---------K 89

Query: 711 SNQQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGF 769
             ++N   VI +LY+ VN + G    +IS + YE++  NA+ L+SAIIYDRDFNYNFFGF
Sbjct: 90  ETKKNFSAVISDLYHYVNPKNGKPAGLISKEIYEVVQANAEVLDSAIIYDRDFNYNFFGF 149

Query: 770 K 770
           K
Sbjct: 150 K 150



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL+SQIETG P+MLYKDA NRKSNQQNL  I+
Sbjct: 389 KLWYAILESQIETGGPFMLYKDAANRKSNQQNLGTIK 425


>gi|189196218|ref|XP_001934447.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980326|gb|EDU46952.1| ribonucleoside-diphosphate reductase large chain [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 795

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/509 (66%), Positives = 410/509 (80%), Gaps = 8/509 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE + K    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKQNKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLAS+AL  +++     ++F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SCEIA   GPYQTYEGSPVSQGILQYDMW VTPTDLWDWA+LK KIA+H
Sbjct: 533 FETIYHAALTSSCEIAKELGPYQTYEGSPVSQGILQYDMWNVTPTDLWDWASLKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I + GSI  I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKDARSQ 568
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+   K+A+   + +AR  
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNIANEARDG 772

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQG 597
            +I AD     A + C  +N E C+   G
Sbjct: 773 -DIYAD-----AVLACSIENPESCVMCSG 795



 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/229 (64%), Positives = 178/229 (77%), Gaps = 4/229 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWA+LK KIA+HGVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I + GSI  I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
             IQFT+D+ ++  A    DT    E +     A A + C  +N E C+
Sbjct: 747 APIQFTVDQEQLKVA----DTNIANEARDGDIYADAVLACSIENPESCV 791



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 29/130 (22%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C GL+D +G++F+ LY+ YE                             K+N G+E 
Sbjct: 353 PNECPGLADVYGDEFEALYESYE-----------------------------KQNKGRET 383

Query: 121 FRARDLFYGL 130
            RA+ L+Y +
Sbjct: 384 VRAQKLWYAI 393



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/92 (68%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SCEIA   GPYQTYEGSPVS
Sbjct: 504 MGVQGLADAFLALRLPFESEEAKKLNIQIFETIYHAALTSSCEIAKELGPYQTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWA+LK     +G++
Sbjct: 564 QGILQYDMWNVTPTDLWDWASLKAKIAEHGVR 595



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+E+LY+ VN + G   PMISD  Y++I  +A+ LNSAI+YDRDFNY FFGFK
Sbjct: 90  TKKQFSAVVEDLYSYVNPKNGKSQPMISDHVYKVIQDHAEELNSAIVYDRDFNYQFFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|328722843|ref|XP_003247688.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/504 (65%), Positives = 404/504 (80%), Gaps = 12/504 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH D++ + EL+KNTG +E + RDLF  LWIPDEFMRRVE++  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GLSD WG+ F  LYKKYE E ++ RQV AR+LWF I+ SQIETG PY+LYKDACN
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDEKRYNRQVSARELWFRIITSQIETGMPYVLYKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEI++YTS +EVAVCNLASIA+NM++ P +  Y+F KL  + K
Sbjct: 424 SKSNQKNLGTIKCSNLCTEIIQYTSSEEVAVCNLASIAVNMFVKP-NGEYDFEKLLKITK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++IDVNFYPV EA  SN RHRP+GIGVQGLADLF+ MR PF   ESR LN QI
Sbjct: 483 IVTKNLNRVIDVNFYPVIEAETSNKRHRPVGIGVQGLADLFLLMRFPFGSPESRKLNSQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A + G Y +Y+GSP+SQGILQYDMW V PTDLWDW  LKEKIAKH
Sbjct: 543 FETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYDMWNVKPTDLWDWDILKEKIAKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y RR LSGEF VVN HLL DL++L LW
Sbjct: 603 GVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEFSVVNRHLLNDLIKLNLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++M+++LI   GS+Q I+ IP  +K+LYKT WE+ QK +LDMAADR AFIDQSQSLNI+
Sbjct: 663 NEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWELSQKIILDMAADRAAFIDQSQSLNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + +    K+SS+HF+GWK GLKTGMYYLRT+PAA+ IQFT++K+ +++ +A         
Sbjct: 723 IEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVNKSTLSSNIA--------- 773

Query: 571 IQADQEQA--MAAMICRRDNKEDC 592
           IQ ++  A  M  ++C  +NK+ C
Sbjct: 774 IQTEKNDALSMQELVCSLENKDAC 797



 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/230 (60%), Positives = 179/230 (77%), Gaps = 11/230 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES EPYT+N+Y
Sbjct: 577 LQYDMWNVKPTDLWDWDILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR LSGEF VVN HLL DL++L LW+++M+++LI   GS+Q I+ IP  +K+LYKT WE
Sbjct: 637 YRRTLSGEFSVVNRHLLNDLIKLNLWNEDMRNELIYYKGSVQKIKSIPDNIKELYKTNWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK +LDMAADR AFIDQSQSLNI++ +    K+SS+HF+GWK GLKTGMYYLRT+PAA
Sbjct: 697 LSQKIILDMAADRAAFIDQSQSLNIHIEQPTIGKISSVHFYGWKKGLKTGMYYLRTRPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA--MAAMICRRDNKEDC 996
           + IQFT++K+ +++ +A         IQ ++  A  M  ++C  +NK+ C
Sbjct: 757 DPIQFTVNKSTLSSNIA---------IQTEKNDALSMQELVCSLENKDAC 797



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLF+ MR PF   ESR LN QIFET+YYGALEASCE+A + G Y +Y+GSP+S
Sbjct: 514 IGVQGLADLFLLMRFPFGSPESRKLNSQIFETLYYGALEASCELAEKYGTYSSYQGSPIS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDW  LK     +G++
Sbjct: 574 QGILQYDMWNVKPTDLWDWDILKEKIAKHGVR 605



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH D++ + EL+KNTG +E + RDLF  LWIPDEFMRRVE++  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADVYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P  C GLSD WG+ F  LYKKYE E
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDE 388



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 55/84 (65%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           FA+L ++I       LYK+  N  S     +VI +LYNM N+    R  +ISD HY ++M
Sbjct: 85  FAVLAARIAISN---LYKETKNNFS-----DVIYDLYNMSNERNQRRMKIISDFHYGVVM 136

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K+ADRLN+AI +DRD+ Y++FGFK
Sbjct: 137 KHADRLNNAIKHDRDYTYSYFGFK 160



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF I+ SQIETG PY+LYKDACN KSNQ+NL  I+
Sbjct: 395 VSARELWFRIITSQIETGMPYVLYKDACNSKSNQKNLGTIK 435


>gi|322792463|gb|EFZ16447.1| hypothetical protein SINV_80023 [Solenopsis invicta]
          Length = 802

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/535 (63%), Positives = 406/535 (75%), Gaps = 33/535 (6%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FLELK+N G    RARDLFYGLWIPD FM RV +D  WSLMC
Sbjct: 263 RPGAFAIYLEPWHADIFEFLELKRNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D WG++F +LY +YE EG++ +QV AR +W AIL SQ ETGTPYMLYKD CN
Sbjct: 323 PYESPGLADVWGDEFKELYIRYEKEGRYRKQVEARTVWLAILRSQGETGTPYMLYKDHCN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN Q+LGTIKCSNLCTEIVEY+   EVAVCNLASIA+NM++N   KT++F KLK VAK
Sbjct: 383 RKSNHQHLGTIKCSNLCTEIVEYSGPGEVAVCNLASIAVNMFVNTDTKTFDFDKLKTVAK 442

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NL+K+IDVNFYP+ E + SN +HRPIGIG+QGLAD F+ MR  FD  E++ LN +I
Sbjct: 443 IVTRNLDKVIDVNFYPIPETKASNQKHRPIGIGIQGLADAFLLMRYSFDSKEAKELNIKI 502

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALE SCE+AA  G Y+TY+GSPVS+GILQYDMW V PTDLW+W  LK KIA+H
Sbjct: 503 FETLYYGALECSCELAAEKGTYETYQGSPVSKGILQYDMWNVKPTDLWNWDELKAKIAEH 562

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTASTAQILGNNES EPYTSNIY RRVLSGEF +VN HLLRDL   GLW
Sbjct: 563 GVRNSLLIAPMPTASTAQILGNNESIEPYTSNIYVRRVLSGEFVIVNPHLLRDLTARGLW 622

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++M+++++ N GS+Q+IE IP  LK LYKTVWEIPQK +L+MAADRGAFIDQSQSLN++
Sbjct: 623 DEDMQNEILANFGSVQNIERIPDDLKMLYKTVWEIPQKVILEMAADRGAFIDQSQSLNVH 682

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-------------- 556
           + +    K++SMHF GW+ GLKTGMYYLRTKPAAN IQFT+D++K+              
Sbjct: 683 IGDPTTEKLTSMHFFGWRSGLKTGMYYLRTKPAANPIQFTVDQSKLQSRDSISSASNTST 742

Query: 557 ------------------ANAMASKDARSQEEIQADQEQAMAAMI-CRRDNKEDC 592
                              +     DA  ++++     + + AM+ C R NKE C
Sbjct: 743 STINSTPINSTPIHQSPNKDVNGDDDAEKRKQLSQQASKNLEAMLACSRKNKEAC 797



 Score =  302 bits (774), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 164/192 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLW+W  LK KIA+HGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 537 LQYDMWNVKPTDLWNWDELKAKIAEHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 596

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF +VN HLLRDL   GLWD++M+++++ N GS+Q+IE IP  LK LYKTVWE
Sbjct: 597 VRRVLSGEFVIVNPHLLRDLTARGLWDEDMQNEILANFGSVQNIERIPDDLKMLYKTVWE 656

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L+MAADRGAFIDQSQSLN+++ +    K++SMHF GW+ GLKTGMYYLRTKPAA
Sbjct: 657 IPQKVILEMAADRGAFIDQSQSLNVHIGDPTTEKLTSMHFFGWRSGLKTGMYYLRTKPAA 716

Query: 949 NAIQFTIDKTKM 960
           N IQFT+D++K+
Sbjct: 717 NPIQFTVDQSKL 728



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FLELK+N G    RARDLFYGLWIPD FM RV +D  WSLMC
Sbjct: 263 RPGAFAIYLEPWHADIFEFLELKRNIGDGNMRARDLFYGLWIPDLFMERVYNDEMWSLMC 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D WG++F +LY +YE EG
Sbjct: 323 PYESPGLADVWGDEFKELYIRYEKEG 348



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR  FD  E++ LN +IFET+YYGALE SCE+AA  G Y+TY+GSPVS
Sbjct: 474 IGIQGLADAFLLMRYSFDSKEAKELNIKIFETLYYGALECSCELAAEKGTYETYQGSPVS 533

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PTDLW+W  LK     +G++
Sbjct: 534 KGILQYDMWNVKPTDLWNWDELKAKIAEHGVR 565



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I+            ++++ +   EV+ +LY   N  T   TP+IS+ +Y II 
Sbjct: 38  YAILAARIDVSN--------LHKETKKSFSEVMHDLYYARNSITNQHTPIISEHYYNIIK 89

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
            NADRL+SAIIYDRDF+YN+ GFK
Sbjct: 90  NNADRLDSAIIYDRDFSYNYIGFK 113



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AIL SQ ETGTPYMLYKD CNRKSN Q+L  I+
Sbjct: 359 VWLAILRSQGETGTPYMLYKDHCNRKSNHQHLGTIK 394


>gi|402591720|gb|EJW85649.1| ribonucleoside-diphosphate reductase [Wuchereria bancrofti]
          Length = 813

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 391/466 (83%), Gaps = 1/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAIYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL DSWGE F+ LY +YE EG++ +QVPARKLW  I+ +QIETG PYM+YKD CN
Sbjct: 363 PAECPGLEDSWGEAFEKLYTQYEEEGRYRKQVPARKLWETIVFTQIETGVPYMVYKDTCN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQQNLGTIKCSNLCTE+V Y+S++E+AVCNLASIAL+ ++  ++ TY+F  L +V K
Sbjct: 423 RKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALSRFVT-SEMTYDFNMLHEVTK 481

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNK+ID N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF   ++R LNK+I
Sbjct: 482 VVVKNLNKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRI 541

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YY ALEASC++A   GPY++YEGSP+S+GILQ+DMWGVTPTD WDW  L+EKIAK+
Sbjct: 542 FETMYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTPTDQWDWEILREKIAKY 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNS+L+APMPTASTAQILGNNES EPYTSN+Y+R VLSG FQ+ N HL+ DL+ L LW
Sbjct: 602 GIRNSVLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQIFNMHLMNDLMHLDLW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK ++I N GSIQ+IE IPQ+++DLYKTVWE+ Q+ ++DMAADRGAFIDQSQSLNI+
Sbjct: 662 DDDMKLEIIKNKGSIQNIERIPQEIRDLYKTVWEMSQRDIIDMAADRGAFIDQSQSLNIF 721

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA +A+QFT+DKT++
Sbjct: 722 IARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRL 767



 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 141/234 (60%), Positives = 181/234 (77%), Gaps = 5/234 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPTD WDW  L+EKIAK+G+RNS+L+APMPTASTAQILGNNES EPYTSN+Y
Sbjct: 576 LQFDMWGVTPTDQWDWEILREKIAKYGIRNSVLLAPMPTASTAQILGNNESIEPYTSNVY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +R VLSG FQ+ N HL+ DL+ L LWDD+MK ++I N GSIQ+IE IPQ+++DLYKTVWE
Sbjct: 636 TRNVLSGSFQIFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYKTVWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + Q+ ++DMAADRGAFIDQSQSLNI++A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA 
Sbjct: 696 MSQRDIIDMAADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAV 755

Query: 949 NAIQFTIDKTKMA-----NAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +A+QFT+DKT++      NA  +  + S        + A   M C     ++CL
Sbjct: 756 DAVQFTVDKTRLKEYDNINADKNSKSSSSSTPATTSKLATKVMECTLSTGDECL 809



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAIYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL DSWGE F+ LY +YE EG
Sbjct: 363 PAECPGLEDSWGEAFEKLYTQYEEEG 388



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF   ++R LNK+IFET+YY ALEASC++A   GPY++YEGSP+S
Sbjct: 513 IGVQGLADAFILMRYPFTSEKARDLNKRIFETMYYAALEASCDLAKEQGPYESYEGSPIS 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTPTD WDW  L+     YG++
Sbjct: 573 KGILQFDMWGVTPTDQWDWEILREKIAKYGIR 604



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  I+ +QIETG PYM+YKD CNRK+NQQNL  I+
Sbjct: 398 KLWETIVFTQIETGVPYMVYKDTCNRKTNQQNLGTIK 434



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     GVT  +L + AA ++ A +      +A L S+I             ++K
Sbjct: 49  ISQKVIAGLYKGVTTVELDNLAA-EIAADMITKHPDYATLASRITVSN--------LHKK 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   ++   LYN  + ++G   P+IS + ++II  NA+ L+SAI+++RD+ Y +FG K
Sbjct: 100 TEKSFSKLSGRLYNATHPKSGRHMPLISKELFDIIQNNANFLDSAIVHERDYLYTYFGLK 159


>gi|341039005|gb|EGS23997.1| hypothetical protein CTHT_0007080 [Chaetomium thermophilum var.
           thermophilum DSM 1495]
          Length = 910

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/466 (69%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNQDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EG+  R V A+KLW+ IL++Q+ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREGRGRRTVKAQKLWYHILEAQVETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLCTEI+EY + DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRCSNLCTEIIEYCAPDEVAVCNLASLALPAFVDYNEGRYDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID+N YPV EAR SN+RHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNRIIDINHYPVPEARKSNLRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC+IA  +GPY+TYEGSPVSQGILQYDMWGVTP+ LWDW +LK KI K+
Sbjct: 533 FETIYHAALTASCDIAKEEGPYETYEGSPVSQGILQYDMWGVTPSPLWDWESLKAKIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLVELGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVELGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI QKT++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQKTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  300 bits (767), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 168/209 (80%), Gaps = 4/209 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+ LWDW +LK KI K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPSPLWDWESLKAKIKKYGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLVELGLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVELGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQKTIVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQA 977
             IQFT+D+     A+  +DT + + +  
Sbjct: 747 QPIQFTVDQ----EALRVQDTTTAKPVSG 771



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNQDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREG 378



 Score =  142 bits (359), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL ASC+IA  +GPY+TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASCDIAKEEGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMWGVTP+ LWDW +LK     YG++
Sbjct: 564 QGILQYDMWGVTPSPLWDWESLKAKIKKYGVR 595



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +A+L ++I             +++
Sbjct: 39  ITQKVIAGVYPGVTTAQLDDLAA-ETAAYMTVTHPDYAVLAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +LY+ VN + G   PMIS + YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVIHDLYHYVNPKNGKPCPMISKETYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+ IL++Q+ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYHILEAQVETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|432101770|gb|ELK29759.1| Ribonucleoside-diphosphate reductase large subunit [Myotis davidii]
          Length = 642

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/540 (63%), Positives = 414/540 (76%), Gaps = 44/540 (8%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 106 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 165

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+C 
Sbjct: 166 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCT 225

Query: 211 ---RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
                       TIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+   + TY+F KL +
Sbjct: 226 VXXXXXXXXXXXTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-TEHTYDFKKLAE 284

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNM-------------------------------- 295
           V K+V +NLNKIID+N+YP+ E   +NM                                
Sbjct: 285 VTKVVVRNLNKIIDINYYPIPEPIRANMCKLTQPRWRLICVYRLGVKTEDNIEGSEAYLS 344

Query: 296 --RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQ 353
             RHRPIGIGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   GPY+
Sbjct: 345 NKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCDLAKEHGPYE 404

Query: 354 TYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
           TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNN
Sbjct: 405 TYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNN 464

Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
           ES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP 
Sbjct: 465 ESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPD 524

Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT 533
            LK LYKTVWEI QKT+L+MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKT
Sbjct: 525 DLKQLYKTVWEISQKTILNMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKT 584

Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           GMYYLRT+PAAN IQFT++K K+ +   +     +      +E+  AAM+C  +N+++C+
Sbjct: 585 GMYYLRTRPAANPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 638



 Score =  325 bits (833), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 187/229 (81%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 416 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 475

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 476 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 535

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+L+MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 536 ISQKTILNMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 595

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +   +     +      +E+  AAM+C  +N+++CL
Sbjct: 596 NPIQFTLNKEKLKDKEKASKEEEE------KERNTAAMVCSLENRDECL 638



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 83/111 (74%)

Query: 574 DQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEAS 633
           D  +   A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEAS
Sbjct: 334 DNIEGSEAYLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEAS 393

Query: 634 CEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           C++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 394 CDLAKEHGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 444



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 106 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 165

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 166 PNECPGLDEVWGEEFEKLYESYEKQGRV 193



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 27/33 (81%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDAC 707
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+C
Sbjct: 192 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSC 224


>gi|193608391|ref|XP_001944671.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 802

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/504 (65%), Positives = 405/504 (80%), Gaps = 12/504 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH DI+ + EL+KNTG +E + RDLF  LWIPDEFMRRVE++  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWSLMC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GLSD WG+ F  LYKKYE E  + +QVPAR+LWF I+ SQIETG PYMLYKDACN
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDEKLYNKQVPARELWFRIITSQIETGMPYMLYKDACN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTE+++YTS++EVAVCNLASIA+NM++ P +  Y+F KL  + K
Sbjct: 424 AKSNQKNLGTIKCSNLCTEVIQYTSEEEVAVCNLASIAVNMFVKP-NGEYDFEKLLKITK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+IDVNFYPV EA  SN RHRPIGIG+QGLADLF  MR PF   ESR LN QI
Sbjct: 483 IVTRNLNKVIDVNFYPVIEAETSNKRHRPIGIGIQGLADLFSLMRFPFGSPESRKLNIQI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YYGALEASCE+A + G Y +Y+GSP+SQGILQY+MW V P+ LW+W  LKEKIAKH
Sbjct: 543 FETLYYGALEASCELAEKYGTYSSYQGSPISQGILQYEMWNVKPSSLWNWEILKEKIAKH 602

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYT+N+Y RR LSGEF V+N HLL DL++L LW
Sbjct: 603 GVRNSLLLAPMPTASTAQILGNNESIEPYTTNLYYRRTLSGEFSVINRHLLNDLIKLNLW 662

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++M+++LI   GS+Q I+ IP  +K+LYKT WE+ QK +LDMAADRGA+IDQSQSLNI+
Sbjct: 663 NEDMRNKLIFFKGSVQKIKSIPDNIKELYKTNWELSQKIILDMAADRGAYIDQSQSLNIH 722

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + +   +K+SS+HF+GWK GLKTGMYYLRT+PAA+ IQFT+DK+ ++N +A         
Sbjct: 723 IEQPTISKISSVHFYGWKKGLKTGMYYLRTRPAADPIQFTVDKSTVSNNVA--------- 773

Query: 571 IQADQEQA--MAAMICRRDNKEDC 592
           IQ ++  A  M  ++C  +NK+ C
Sbjct: 774 IQTEKNDALNMEQLVCSLENKDAC 797



 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/230 (59%), Positives = 180/230 (78%), Gaps = 11/230 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW V P+ LW+W  LKEKIAKHGVRNSLL+APMPTASTAQILGNNES EPYT+N+Y
Sbjct: 577 LQYEMWNVKPSSLWNWEILKEKIAKHGVRNSLLLAPMPTASTAQILGNNESIEPYTTNLY 636

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR LSGEF V+N HLL DL++L LW+++M+++LI   GS+Q I+ IP  +K+LYKT WE
Sbjct: 637 YRRTLSGEFSVINRHLLNDLIKLNLWNEDMRNKLIFFKGSVQKIKSIPDNIKELYKTNWE 696

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK +LDMAADRGA+IDQSQSLNI++ +   +K+SS+HF+GWK GLKTGMYYLRT+PAA
Sbjct: 697 LSQKIILDMAADRGAYIDQSQSLNIHIEQPTISKISSVHFYGWKKGLKTGMYYLRTRPAA 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA--MAAMICRRDNKEDC 996
           + IQFT+DK+ ++N +A         IQ ++  A  M  ++C  +NK+ C
Sbjct: 757 DPIQFTVDKSTVSNNVA---------IQTEKNDALNMEQLVCSLENKDAC 797



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH DI+ + EL+KNTG +E + RDLF  LWIPDEFMRRVE++  WSLMC
Sbjct: 304 RPGAVAVYIEPWHADIYTYTELRKNTGNKEEKTRDLFLALWIPDEFMRRVEANQSWSLMC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P  C GLSD WG+ F  LYKKYE E L
Sbjct: 364 PRKCPGLSDVWGDDFVKLYKKYEDEKL 390



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLADLF  MR PF   ESR LN QIFET+YYGALEASCE+A + G Y +Y+GSP+S
Sbjct: 514 IGIQGLADLFSLMRFPFGSPESRKLNIQIFETLYYGALEASCELAEKYGTYSSYQGSPIS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQY+MW V P+ LW+W  LK     +G++
Sbjct: 574 QGILQYEMWNVKPSSLWNWEILKEKIAKHGVR 605



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 10/85 (11%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNL-EVIEELYNMVNKETGTRTPMISDKHYEII 745
           FA+L ++I     Y         K  ++N  +VI +LYNM N+   +R P+ISD HY I+
Sbjct: 85  FAVLAARIAISNLY---------KETKENFSDVIYDLYNMSNERNQSRMPIISDFHYGIV 135

Query: 746 MKNADRLNSAIIYDRDFNYNFFGFK 770
           MK+ADRLN+AI +DRD+ Y++FGFK
Sbjct: 136 MKHADRLNNAIKHDRDYTYSYFGFK 160



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF I+ SQIETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 399 ELWFRIITSQIETGMPYMLYKDACNAKSNQKNLGTIK 435


>gi|336275156|ref|XP_003352331.1| heterokaryon incompatibility protein [Sordaria macrospora k-hell]
 gi|380088434|emb|CCC13588.1| putative heterokaryon incompatibility protein [Sordaria macrospora
           k-hell]
          Length = 937

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/466 (69%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+R+E +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALAAFVDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV EA NSNMRHRPIG+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 473 VVVRNLNKIIDVNHYPVMEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSPEARKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   G Y TYEGSPVSQGILQYDMW VTP++LWDWAALK  I KH
Sbjct: 533 FETIYHAALTASCQLAKEQGTYSTYEGSPVSQGILQYDMWNVTPSNLWDWAALKADIKKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  301 bits (772), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 139/192 (72%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP++LWDWAALK  I KHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPSNLWDWAALKADIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLRDLVE+GLW DNMK+++I   GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDNMKNRIIAEGGSIQNIASIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+R+E +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRIEQNGTWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ AL ASC++A   G Y TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSPEARKLNIQIFETIYHAALTASCQLAKEQGTYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTP++LWDWAALK     +G++
Sbjct: 564 QGILQYDMWNVTPSNLWDWAALKADIKKHGVR 595



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI ELYN VN +TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSLVINELYNYVNPKTGKHSPMIAKDTYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|324506544|gb|ADY42792.1| Ribonucleoside-diphosphate reductase large subunit, partial
           [Ascaris suum]
          Length = 790

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/471 (68%), Positives = 396/471 (84%), Gaps = 1/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF++L+L+KN G E  R RDLF+GLW+PD FM+RV  + +WSLMC
Sbjct: 303 RPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGLWVPDLFMQRVRDNGKWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  CRGL D WG++F+ LY KYEAEG++ +Q+ AR+LW AI+ +QIETG PYM+YKDACN
Sbjct: 363 PAECRGLEDCWGDEFEKLYSKYEAEGRYRKQIEARRLWEAIITAQIETGVPYMVYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQN+GTIKCSNLCTEIVEY+S  EVAVCNLASIALN ++   +KT++F KL +V K
Sbjct: 423 RKSNQQNVGTIKCSNLCTEIVEYSSPTEVAVCNLASIALNRFVT-TEKTFDFKKLHEVTK 481

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIID N+YPV EA+ SNMRHRPIGIGVQGLAD F+ MR PF    +R LNK+I
Sbjct: 482 VVTRNLNKIIDGNYYPVPEAKVSNMRHRPIGIGVQGLADAFMLMRYPFTSAPARELNKRI 541

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A + GPY++YEGSP+S+GILQ DMWGV PTD  DW  L+ +IAK+
Sbjct: 542 FETIYHAALEASCELAKKYGPYESYEGSPISKGILQQDMWGVEPTDQCDWDTLRAEIAKY 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSN+Y+R VLSG FQ+ N HLL+DLV+LGLW
Sbjct: 602 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGNFQIFNPHLLKDLVDLGLW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK ++I + GS+Q IE IP ++++LYKTVWE+ QK ++DMAADRGAFIDQSQSLNI+
Sbjct: 662 DDEMKLEIIAHKGSVQAIERIPLEIRNLYKTVWELSQKDIIDMAADRGAFIDQSQSLNIF 721

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           +A+ +YA  +SMHF+GW  GLKTGMYYLRT+PA +A+QFT+DKT++    A
Sbjct: 722 IAKPSYANCTSMHFYGWSKGLKTGMYYLRTRPAVDAVQFTVDKTRLKEVNA 772



 Score =  292 bits (747), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 132/194 (68%), Positives = 164/194 (84%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGV PTD  DW  L+ +IAK+GVRNSLL+APMPTASTAQILGNNES EPYTSN+Y+R 
Sbjct: 579 DMWGVEPTDQCDWDTLRAEIAKYGVRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRN 638

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSG FQ+ N HLL+DLV+LGLWDD MK ++I + GS+Q IE IP ++++LYKTVWE+ Q
Sbjct: 639 VLSGNFQIFNPHLLKDLVDLGLWDDEMKLEIIAHKGSVQAIERIPLEIRNLYKTVWELSQ 698

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++DMAADRGAFIDQSQSLNI++A+ +YA  +SMHF+GW  GLKTGMYYLRT+PA +A+
Sbjct: 699 KDIIDMAADRGAFIDQSQSLNIFIAKPSYANCTSMHFYGWSKGLKTGMYYLRTRPAVDAV 758

Query: 952 QFTIDKTKMANAMA 965
           QFT+DKT++    A
Sbjct: 759 QFTVDKTRLKEVNA 772



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF++L+L+KN G E  R RDLF+GLW+PD FM+RV  + +WSLMC
Sbjct: 303 RPGAFAIYLEPWHADIFEYLDLRKNVGDELERCRDLFFGLWVPDLFMQRVRDNGKWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  CRGL D WG++F+ LY KYEAEG
Sbjct: 363 PAECRGLEDCWGDEFEKLYSKYEAEG 388



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MR PF    +R LNK+IFETIY+ ALEASCE+A + GPY++YEGSP+S
Sbjct: 513 IGVQGLADAFMLMRYPFTSAPARELNKRIFETIYHAALEASCELAKKYGPYESYEGSPIS 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGV PTD  DW  L+     YG++
Sbjct: 573 KGILQQDMWGVEPTDQCDWDTLRAEIAKYGVR 604



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           VSQ ++     GV+   L + AA +  A +      +AIL ++I             +++
Sbjct: 49  VSQKVIAGLFKGVSTVQLDNLAA-ETAADMTTKHPDYAILAARIAISN--------LHKQ 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV   LYN  + +TG  TPMIS + ++II+ NADRLNSAI++DRDF++ +FGFK
Sbjct: 100 TKKMFSEVATVLYNAHHPKTGVHTPMISKEVFDIIIANADRLNSAIVHDRDFSFTYFGFK 159



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AI+ +QIETG PYM+YKDACNRKSNQQN+  I+
Sbjct: 398 RLWEAIITAQIETGVPYMVYKDACNRKSNQQNVGTIK 434


>gi|302689939|ref|XP_003034649.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
 gi|300108344|gb|EFI99746.1| hypothetical protein SCHCODRAFT_75631 [Schizophyllum commune H4-8]
          Length = 892

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/496 (66%), Positives = 404/496 (81%), Gaps = 7/496 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVES   WSL C
Sbjct: 296 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYEAEG+  +++PA+KLW+AIL++QIETG P+MLYKD+ N
Sbjct: 356 PNEAPGLADCWGDEFEALYAKYEAEGRERKKIPAQKLWYAILEAQIETGNPFMLYKDSAN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EY++ DE AVCNLAS+AL  +I   D  Y+F KL DV K
Sbjct: 416 RKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASLALPTFIR--DGVYDFQKLHDVTK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YPV EAR SNMRHRPIG+GVQGLAD F+ +R+PFD  E+R LNKQI
Sbjct: 474 VVTRNLNKIIDVNYYPVPEARRSNMRHRPIGLGVQGLADAFMALRMPFDSPEARELNKQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A EAS ++A  +GPY+T+EGSP SQG LQ+D+WGVTP+DLWDWA+LK KIA+ 
Sbjct: 534 FETIYHAACEASSDLAEEEGPYETWEGSPASQGQLQFDLWGVTPSDLWDWASLKAKIART 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RN+LL+APMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+ GLW
Sbjct: 594 GMRNALLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDKGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+Q+I NNGSIQ I  IP  +K +YKTVWEI QK VLD+AADRG FI QSQSLN++
Sbjct: 654 DDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWEISQKKVLDLAADRGPFICQSQSLNVH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A     +++SMHF+GWK GLKTGMYYLRT+PA+ AIQFT+D+     AM  +  +++ E
Sbjct: 714 LAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTVDQ-----AMLKESNKAEGE 768

Query: 571 IQADQEQAMAAMICRR 586
           +     + + A   R+
Sbjct: 769 VAGAPARPVVATTPRK 784



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/222 (61%), Positives = 175/222 (78%), Gaps = 5/222 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGVTP+DLWDWA+LK KIA+ G+RN+LL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 568 LQFDLWGVTPSDLWDWASLKAKIARTGMRNALLVAPMPTASTSQILGNNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+ GLWDD MK+Q+I NNGSIQ I  IP  +K +YKTVWE
Sbjct: 628 TRRVLAGEFQVVCPWLLRELVDKGLWDDKMKNQIIANNGSIQSIARIPDDIKAIYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRG FI QSQSLN+++A     +++SMHF+GWK GLKTGMYYLRT+PA+
Sbjct: 688 ISQKKVLDLAADRGPFICQSQSLNVHLAAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAS 747

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRR 990
            AIQFT+D+     AM  +  +++ E+     + + A   R+
Sbjct: 748 QAIQFTVDQ-----AMLKESNKAEGEVAGAPARPVVATTPRK 784



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVES   WSL C
Sbjct: 296 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEQRARDLFYALWIPDLFMKRVESGGDWSLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYEAEG
Sbjct: 356 PNEAPGLADCWGDEFEALYAKYEAEG 381



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LNKQIFETIY+ A EAS ++A  +GPY+T+EGSP S
Sbjct: 505 LGVQGLADAFMALRMPFDSPEARELNKQIFETIYHAACEASSDLAEEEGPYETWEGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WGVTP+DLWDWA+LK      G++
Sbjct: 565 QGQLQFDLWGVTPSDLWDWASLKAKIARTGMR 596



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QG+      GVT  +L + AA +  A +      +A+L ++I       L+K+     
Sbjct: 46  VVQGVYH----GVTTVELDNLAA-ETAAYLTTQHPDYAVLAARIAISN---LHKETTKSF 97

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +V+E+LYN VN + G R  MISD  Y+++M NA+ L+SAIIYDRDF YN+FGFK
Sbjct: 98  S-----QVVEKLYNYVNPKNGKRASMISDATYKVVMDNAETLDSAIIYDRDFAYNYFGFK 152



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+MLYKD+ NRKSNQQNL  I+
Sbjct: 391 KLWYAILEAQIETGNPFMLYKDSANRKSNQQNLGTIK 427


>gi|378729263|gb|EHY55722.1| ribonucleoside-diphosphate reductase large chain [Exophiala
           dermatitidis NIH/UT8656]
          Length = 918

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/469 (69%), Positives = 392/469 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F++L L+KN GKEE RARDLFY LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEWLNLRKNHGKEEVRARDLFYALWTPDLFMKRVEKNQDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F+ LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHEAPGLADVYGDEFEALYEKYEKEGRGRQTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLAS+AL  +++ A   Y+F +L +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPTFVDQARGEYDFGRLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIID+N+YPV EA+NSNMRHRPIG+GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VVTRNLNKIIDINYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRLPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASCE+A   GPY TYEGSPVSQGILQYDMW VTPTDLWDW ALK +IAKH
Sbjct: 533 FETIYHAALTASCELAKEQGPYSTYEGSPVSQGILQYDMWNVTPTDLWDWDALKAEIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+TVL MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTVLQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  302 bits (773), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 141/195 (72%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALK +IAKHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDALKAEIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TVL MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRTVLQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ AL ASCE+A   GPY TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCELAKEQGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVTPTDLWDWDALKAEIAKHGVR 595



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F++L L+KN GKEE RARDLFY LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEWLNLRKNHGKEEVRARDLFYALWTPDLFMKRVEKNQDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN + G  +PMIS + YE +M++ D LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVISDLYHYVNPKNGKPSPMISTETYECVMRHQDELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|336468943|gb|EGO57106.1| ribonucleotide reductase large subunit [Neurospora tetrasperma FGSC
           2508]
 gi|350288752|gb|EGZ69977.1| ribonucleotide reductase large subunit [Neurospora tetrasperma FGSC
           2509]
          Length = 920

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + +  LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK  I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I   GSIQ+I+ IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  295 bits (756), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDW ALK  I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLRDLVE+GLW D MK+++I   GSIQ+I+ IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD + +  LN QIFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPT+LWDW ALK     YG++
Sbjct: 564 QGILQYDMWNVTPTNLWDWTALKADIKKYGVR 595



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI ELYN VN  TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSFVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|353029222|gb|ABF71875.2| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 923

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + +  LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK  I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I   GSIQ+I+ IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  295 bits (755), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDW ALK  I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLRDLVE+GLW D MK+++I   GSIQ+I+ IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD + +  LN QIFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPT+LWDW ALK     YG++
Sbjct: 564 QGILQYDMWNVTPTNLWDWTALKADIKKYGVR 595



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI ELYN VN  TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|393231310|gb|EJD38904.1| ribonucleotide reductase alpha subunit [Auricularia delicata
           TFB-10046 SS5]
          Length = 871

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/475 (68%), Positives = 394/475 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE + +WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEENGEWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL +    +F+ LY++YE EG+  + +PA+KLW+AIL++QIETG P+MLYKDACN
Sbjct: 354 PNEAPGLHEVHSAEFEALYERYEKEGRARKTIPAQKLWYAILEAQIETGGPFMLYKDACN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEIVEY++ DEVAVCNLASIAL  ++    ++Y+F KL DVAK
Sbjct: 414 AKSNQQNLGTIKSSNLCTEIVEYSAPDEVAVCNLASIALPSFVAADKQSYDFQKLHDVAK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN+YPV EAR SNMRHRPIGIGVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 474 VVARNLNKIIDVNYYPVPEARRSNMRHRPIGIGVQGLADAFMILRLPFDSAEARKLNLQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS E+AARDGPY+T+EGSP  QG LQYD+WG TPTDLWDWAALKE+IA+ 
Sbjct: 534 FETIYHAALEASSELAARDGPYETWEGSPAQQGRLQYDLWGATPTDLWDWAALKEQIAQT 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+  LW
Sbjct: 594 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDRRLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+ +I N GS+Q+I GIP  +K +YKTVWEI QK VLDMAADRGAFI QSQSLN++
Sbjct: 654 DDHMKNLIIANGGSVQNIPGIPDDVKAIYKTVWEISQKKVLDMAADRGAFICQSQSLNVH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D   +  A ++++ 
Sbjct: 714 LQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDAAVLKEAKSARNG 768



 Score =  291 bits (746), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 166/200 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WG TPTDLWDWAALKE+IA+ G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDLWGATPTDLWDWAALKEQIAQTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+  LWDD+MK+ +I N GS+Q+I GIP  +K +YKTVWE
Sbjct: 628 TRRVLAGEFQVVCPWLLRELVDRRLWDDHMKNLIIANGGSVQNIPGIPDDVKAIYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDMAADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 688 ISQKKVLDMAADRGAFICQSQSLNVHLQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAA 747

Query: 949 NAIQFTIDKTKMANAMASKD 968
            AIQFT+D   +  A ++++
Sbjct: 748 QAIQFTVDAAVLKEAKSARN 767



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +RLPFD  E+R LN QIFETIY+ ALEAS E+AARDGPY+T+EGSP  
Sbjct: 505 IGVQGLADAFMILRLPFDSAEARKLNLQIFETIYHAALEASSELAARDGPYETWEGSPAQ 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYD+WG TPTDLWDWAALK      GL+
Sbjct: 565 QGRLQYDLWGATPTDLWDWAALKEQIAQTGLR 596



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE + +WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEENGEWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL +    +F+ LY++YE EG
Sbjct: 354 PNEAPGLHEVHSAEFEALYERYEKEG 379



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A +      +AIL ++I             ++++ +    VIE+
Sbjct: 51  GVTTVELDNLAA-ETAAYMTTKHPDYAILAARIAISN--------LHKETKKSFSHVIED 101

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            YN VN + G    MIS++ Y ++  NA+ L+S+IIYDRDF+Y +FGFK
Sbjct: 102 CYNYVNPKNGKPAGMISEETYRVVKANAELLDSSIIYDRDFHYQYFGFK 150



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+MLYKDACN KSNQQNL  I+
Sbjct: 389 KLWYAILEAQIETGGPFMLYKDACNAKSNQQNLGTIK 425


>gi|384500853|gb|EIE91344.1| hypothetical protein RO3G_16055 [Rhizopus delemar RA 99-880]
          Length = 803

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/511 (64%), Positives = 410/511 (80%), Gaps = 4/511 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G FA+YLEPWH D+FDFL+L+KN G EE RARDLF GLW+PD FM+RVE + +WSL C
Sbjct: 293 RNGNFAMYLEPWHVDVFDFLDLRKNNGAEEMRARDLFLGLWVPDLFMKRVEQNGKWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL DS+GEKFD LY KYE EGK  + + A+KLWFAIL++Q ETG PYMLYKDACN
Sbjct: 353 PDEAPGLWDSYGEKFDALYIKYENEGKARKTIEAQKLWFAILEAQTETGMPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI  SNLCTEI+EYTS DEVAVCNLAS+AL  ++N   KT++F KL +V K
Sbjct: 413 EKSNQKNLGTITSSNLCTEIIEYTSPDEVAVCNLASLALPKFVNKDTKTFDFAKLHEVTK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+IDVN+YPVEEARNSNMRHRPIG+GVQGLAD FI M  PFD  E+  LN+ I
Sbjct: 473 VVTRNLNKVIDVNYYPVEEARNSNMRHRPIGLGVQGLADAFILMGFPFDSPEAAQLNRDI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ ALEASCE+A   GPY+TY GSP+SQGILQ+DMW V  +D+ DW  L+  I K+
Sbjct: 533 FERIYFAALEASCELAKEHGPYETYLGSPISQGILQHDMWNVKDSDILDWDTLRSNIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRV SGEFQVVN +LL +LV+LGLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVQSGEFQVVNQYLLNELVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +DN+K+ +I + GSIQ I GIP +LK+LYKTVWEI Q+T++DMAADRGA+IDQSQS+N++
Sbjct: 653 NDNIKNMMIAHGGSIQRIPGIPDRLKELYKTVWEISQRTIIDMAADRGAYIDQSQSMNLF 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK--TKMANAMASKDAR-- 566
            AE ++ K++SMHF+ WK GLKTGMYYLR++PA +AI+FT+D+   K  +   SKD +  
Sbjct: 713 TAEPSFGKLTSMHFYAWKKGLKTGMYYLRSRPAVDAIKFTVDQLALKQMSLSESKDDKFD 772

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
           S +E +  +++ +A + C  DN++ C+   G
Sbjct: 773 SAKEAEEAEQRRLAQLQCSIDNRDACLMCSG 803



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/233 (58%), Positives = 185/233 (79%), Gaps = 4/233 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V  +D+ DW  L+  I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQHDMWNVKDSDILDWDTLRSNIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRV SGEFQVVN +LL +LV+LGLW+DN+K+ +I + GSIQ I GIP +LK+LYKTVWE
Sbjct: 627 TRRVQSGEFQVVNQYLLNELVDLGLWNDNIKNMMIAHGGSIQRIPGIPDRLKELYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQS+N++ AE ++ K++SMHF+ WK GLKTGMYYLR++PA 
Sbjct: 687 ISQRTIIDMAADRGAYIDQSQSMNLFTAEPSFGKLTSMHFYAWKKGLKTGMYYLRSRPAV 746

Query: 949 NAIQFTIDK--TKMANAMASKDTR--SQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D+   K  +   SKD +  S +E +  +++ +A + C  DN++ CL
Sbjct: 747 DAIKFTVDQLALKQMSLSESKDDKFDSAKEAEEAEQRRLAQLQCSIDNRDACL 799



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G FA+YLEPWH D+FDFL+L+KN G EE RARDLF GLW+PD FM+RVE + +WSL C
Sbjct: 293 RNGNFAMYLEPWHVDVFDFLDLRKNNGAEEMRARDLFLGLWVPDLFMKRVEQNGKWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL DS+GEKFD LY KYE EG
Sbjct: 353 PDEAPGLWDSYGEKFDALYIKYENEG 378



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI M  PFD  E+  LN+ IFE IY+ ALEASCE+A   GPY+TY GSP+S
Sbjct: 504 LGVQGLADAFILMGFPFDSPEAAQLNRDIFERIYFAALEASCELAKEHGPYETYLGSPIS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW V  +D+ DW  L+     YG++
Sbjct: 564 QGILQHDMWNVKDSDILDWDTLRSNIKKYGVR 595



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWFAIL++Q ETG PYMLYKDACN KSNQ+NL  I
Sbjct: 388 KLWFAILEAQTETGMPYMLYKDACNEKSNQKNLGTI 423



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     G+T  +L + AA +  A +      FA L ++I              ++
Sbjct: 39  ISQKVISGVYQGITTVELDNLAA-ETAAYMTTNHPDFATLAARIVISN--------LQKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           ++ +   V+++LY+  + +    +P++S + Y+++M NA ++++AI ++RD+++NFFGFK
Sbjct: 90  TDDKFSAVVQKLYHHEHPKLKQASPLVSKELYDVVMANASKIDAAIKHERDYDFNFFGFK 149


>gi|440632150|gb|ELR02069.1| ribonucleoside-diphosphate reductase subunit M1 [Geomyces
           destructans 20631-21]
          Length = 827

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYVEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGAWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE EGK  + + A+KLW++IL+SQ ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYEGYEKEGKGRKTIKAQKLWYSILESQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  Y++ A+ TY+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDMANGTYDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNKIIDVN+YPVEEAR SN RHRP+ +GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVKNLNKIIDVNYYPVEEARRSNFRHRPVAVGVQGLADAFLALRLPFDSPEAKFLNSQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS E+A   G Y+TYEGSPVS+G LQYDMWGVTPTDLWDW +LK +I +H
Sbjct: 533 FETIYHGALTASVELAQIHGTYETYEGSPVSKGELQYDMWGVTPTDLWDWDSLKVRIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW +LK +I +HGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWDSLKVRIKQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYVEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGAWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+ YE EG
Sbjct: 353 PNECPGLADVYGDEFEALYEGYEKEG 378



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS E+A   
Sbjct: 492 ARRSNFRHRPVAVGVQGLADAFLALRLPFDSPEAKFLNSQIFETIYHGALTASVELAQIH 551

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G Y+TYEGSPVS+G LQYDMWGVTPTDLWDW +LKV    +G++
Sbjct: 552 GTYETYEGSPVSKGELQYDMWGVTPTDLWDWDSLKVRIKQHGVR 595



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +    +PMI+ K Y+I+MK+A+ LNSA++YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIHDLYHYVNPKNSKPSPMIAKKTYDIVMKHAEELNSAVLYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL+SQ ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYSILESQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|390596008|gb|EIN05411.1| hypothetical protein PUNSTDRAFT_107092 [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 855

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/492 (65%), Positives = 403/492 (81%), Gaps = 3/492 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+F++L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADIFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WG +F+ L+++YE EG+  + +PA+KLW+AI+++QIETG P+MLYKDACN
Sbjct: 354 PNEAPGLHEVWGPEFEALFERYEKEGRAKKTIPAQKLWYAIMEAQIETGGPFMLYKDACN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY+S +E AVCNLAS+AL  +++ + KTY+F KL +VAK
Sbjct: 414 SKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASMALPSFVDMSTKTYDFKKLHEVAK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN++IDVN YP+  AR SNMRHRP+G+GVQGLAD F+ +R+PFD   ++ LNKQI
Sbjct: 474 VVTYNLNRVIDVNHYPIPSARRSNMRHRPVGLGVQGLADTFMMLRMPFDSPAAKQLNKQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS EIA RDGPY+T+EGSP  QG LQYD+WGVTPTDLWDW +LKEKI + 
Sbjct: 534 FETLYHAALEASSEIAERDGPYETWEGSPAQQGKLQYDLWGVTPTDLWDWKSLKEKITRT 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LVEL LW
Sbjct: 594 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVELKLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+ +I NNGSIQ I GIP  +K +YKTVWE+ QK VLDMAADRGAFI QSQSLN++
Sbjct: 654 DDQMKNMIIANNGSIQSIIGIPDDVKAIYKTVWELSQKVVLDMAADRGAFICQSQSLNVH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +      +++SMHF+GW+ GLKTGMYYLRT+PAANAIQFT+D+  +    A+K+ R + +
Sbjct: 714 LQAPTMGQLTSMHFYGWRKGLKTGMYYLRTRPAANAIQFTVDQKVL---QAAKEGREKGK 770

Query: 571 IQADQEQAMAAM 582
            +A+   A  A+
Sbjct: 771 PKAEVSDAAPAV 782



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 175/218 (80%), Gaps = 3/218 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPTDLWDW +LKEKI + G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDLWGVTPTDLWDWKSLKEKITRTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LVEL LWDD MK+ +I NNGSIQ I GIP  +K +YKTVWE
Sbjct: 628 TRRVLAGEFQVVCPWLLRELVELKLWDDQMKNMIIANNGSIQSIIGIPDDVKAIYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK VLDMAADRGAFI QSQSLN+++      +++SMHF+GW+ GLKTGMYYLRT+PAA
Sbjct: 688 LSQKVVLDMAADRGAFICQSQSLNVHLQAPTMGQLTSMHFYGWRKGLKTGMYYLRTRPAA 747

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAM 986
           NAIQFT+D+  +    A+K+ R + + +A+   A  A+
Sbjct: 748 NAIQFTVDQKVL---QAAKEGREKGKPKAEVSDAAPAV 782



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+F++L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADIFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WG +F+ L+++YE EG
Sbjct: 354 PNEAPGLHEVWGPEFEALFERYEKEG 379



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 77/104 (74%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +R+PFD   ++ LNKQIFET+Y+ ALEAS EIA RD
Sbjct: 493 ARRSNMRHRPVGLGVQGLADTFMMLRMPFDSPAAKQLNKQIFETLYHAALEASSEIAERD 552

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+T+EGSP  QG LQYD+WGVTPTDLWDW +LK      GL+
Sbjct: 553 GPYETWEGSPAQQGKLQYDLWGVTPTDLWDWKSLKEKITRTGLR 596



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +      +AIL ++I       L+K+  N+ 
Sbjct: 40  IAQKVISGVYPGVTTIELDNLAA-ETAAYLTTKHPDYAILAARIAVSN---LHKETKNKF 95

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     EV+++LY  VN +TG    +IS + Y+I+M NA  L+SA++Y+RDF YNFFGFK
Sbjct: 96  S-----EVVKDLYEYVNPKTGKPAGLISQETYDIVMANAATLDSAVVYERDFQYNFFGFK 150



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI+++QIETG P+MLYKDACN KSNQQNL  I+
Sbjct: 389 KLWYAIMEAQIETGGPFMLYKDACNSKSNQQNLGTIK 425


>gi|85081938|ref|XP_956818.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
 gi|30316299|sp|Q9UW15.2|RIR1_NEUCR RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|11256439|pir||T51069 ribonucleoside-diphosphate reductase large chain (un-24gene)
           [imported] - Neurospora crassa
 gi|9368573|emb|CAB98233.1| ribonucleoside-diphosphate reductase large chain (un-24)
           [Neurospora crassa]
 gi|28917896|gb|EAA27582.1| ribonucleoside-diphosphate reductase large chain [Neurospora crassa
           OR74A]
          Length = 929

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + +  LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK  I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I   GSIQ+I+ IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDW ALK  I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLRDLVE+GLW D MK+++I   GSIQ+I+ IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD + +  LN QIFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPT+LWDW ALK     YG++
Sbjct: 564 QGILQYDMWNVTPTNLWDWTALKADIKKYGVR 595



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI ELYN VN  TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|5733808|gb|AAD49743.1| ribonucleotide reductase large subunit [Neurospora crassa]
          Length = 929

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY+KYE EGK  + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+  + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + +  LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK  I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I   GSIQ+I+ IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT+LWDW ALK  I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLRDLVE+GLW D MK+++I   GSIQ+I+ IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378



 Score =  136 bits (342), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD + +  LN QIFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPT+LWDW ALK     YG++
Sbjct: 564 QGILQYDMWNVTPTNLWDWTALKADIKKYGVR 595



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI ELYN VN  TG  +PMI+   YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|328784177|ref|XP_001121495.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit [Apis
           mellifera]
          Length = 610

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/454 (72%), Positives = 387/454 (85%)

Query: 106 IFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKF 165
           +F+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMCP+   GL+D WG +F
Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161

Query: 166 DDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSN 225
           + LY +YE E ++ RQ+ AR LW AIL SQ+ETGTPYMLYKD CNRKSN QN+GTIK SN
Sbjct: 162 EILYTRYENEKRYKRQIQARDLWTAILISQVETGTPYMLYKDHCNRKSNHQNIGTIKSSN 221

Query: 226 LCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY 285
           LCTE+V+Y+S DEVAVCNLASIA+NM++NP ++T++F KL  V KIVT NL+KIIDVN+Y
Sbjct: 222 LCTEVVQYSSPDEVAVCNLASIAVNMFVNPINQTFDFQKLLKVTKIVTCNLDKIIDVNYY 281

Query: 286 PVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEI 345
           P+ EAR SN RHRPIGIG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+
Sbjct: 282 PIPEARKSNFRHRPIGIGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCEL 341

Query: 346 AARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAS 405
           A   G Y+TYEGSPVS+GILQYDMW V PT+LWDW  LK+KIAKHGVRNSLLIAPMPTAS
Sbjct: 342 AEEKGTYETYEGSPVSKGILQYDMWNVIPTNLWDWTILKKKIAKHGVRNSLLIAPMPTAS 401

Query: 406 TAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 465
           TAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLRDL E  LWD++MK+++I NNGSI
Sbjct: 402 TAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLRDLTERDLWDEDMKNEIIANNGSI 461

Query: 466 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFH 525
           QDIE IP  LK LYKTVWEIPQK +L MAADRGAFIDQSQSLN++MA+    K++SMHF+
Sbjct: 462 QDIERIPDDLKMLYKTVWEIPQKIILKMAADRGAFIDQSQSLNVHMAKPTTEKLTSMHFY 521

Query: 526 GWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           GWK+GLKTGMYYLRTKPAANA+QFT+DK+K+ N 
Sbjct: 522 GWKMGLKTGMYYLRTKPAANALQFTVDKSKLRNT 555



 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/195 (77%), Positives = 172/195 (88%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT+LWDW  LK+KIAKHGVRNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 361 LQYDMWNVIPTNLWDWTILKKKIAKHGVRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 420

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLRDL E  LWD++MK+++I NNGSIQDIE IP  LK LYKTVWE
Sbjct: 421 TRRVLSGEFQVVNPHLLRDLTERDLWDEDMKNEIIANNGSIQDIERIPDDLKMLYKTVWE 480

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQK +L MAADRGAFIDQSQSLN++MA+    K++SMHF+GWK+GLKTGMYYLRTKPAA
Sbjct: 481 IPQKIILKMAADRGAFIDQSQSLNVHMAKPTTEKLTSMHFYGWKMGLKTGMYYLRTKPAA 540

Query: 949 NAIQFTIDKTKMANA 963
           NA+QFT+DK+K+ N 
Sbjct: 541 NALQFTVDKSKLRNT 555



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR PF+  E++ LN QIFET+YYGALEASCE+A   G Y+TYEGSPVS
Sbjct: 298 IGIQGLADAFLLMRYPFESEEAQKLNIQIFETLYYGALEASCELAEEKGTYETYEGSPVS 357

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PT+LWDW  LK     +G++
Sbjct: 358 KGILQYDMWNVIPTNLWDWTILKKKIAKHGVR 389



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 55/70 (78%)

Query: 16  IFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKF 75
           +F+FL+LKKNTGKEE RAR+LFY LWIPD FM+RV  +  W+LMCP+   GL+D WG +F
Sbjct: 102 VFEFLDLKKNTGKEENRARELFYALWIPDLFMKRVLDNDIWTLMCPHESPGLADVWGNEF 161

Query: 76  DDLYKKYEAE 85
           + LY +YE E
Sbjct: 162 EILYTRYENE 171



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL SQ+ETGTPYMLYKD CNRKSN QN+  I+
Sbjct: 183 LWTAILISQVETGTPYMLYKDHCNRKSNHQNIGTIK 218


>gi|2244677|emb|CAA67423.1| ribonucleotide reductase [Spodoptera littoralis NPV]
          Length = 781

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/464 (68%), Positives = 396/464 (85%), Gaps = 1/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+     +F+ LY+KYE +G+++++V A+ LW AI+++Q+ETGTPYMLYKD+CN
Sbjct: 352 PMQSPGLAIVTVFEFEALYEKYEKQGRYVKRVSAQTLWRAIIEAQVETGTPYMLYKDSCN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA+N ++ P    Y+F +LK++ K
Sbjct: 412 RKSNQSNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAVNKFVAPQPGVYDFERLKEITK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
              +NLN+IID N  P+ EA  SN R+RPIGIGVQG+AD F+ MR+PF+ + +  LNK+I
Sbjct: 472 SCDRNLNRIIDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAELNKKI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKIAK 389
           FETI+YGALEA+CE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK KI+K
Sbjct: 532 FETIFYGALEANCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISK 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTASTAQILGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GL
Sbjct: 592 YGLRNSLLLAPMPTASTAQILGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D MK+ ++ NNGS+Q+IE IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+
Sbjct: 652 WNDTMKNLIMYNNGSVQNIESIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNV 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           YMAE +Y K++S+HF+ WK+GLKTGMYYLRTKPA N+IQFT+DK
Sbjct: 712 YMAEPSYGKLTSIHFYAWKMGLKTGMYYLRTKPAVNSIQFTVDK 755



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 192/264 (72%), Gaps = 17/264 (6%)

Query: 710 KSNQQNLEVIEELYNMVNKETGTRTPMISD-------KHYEIIMKNADRLNSAIIYDRDF 762
           +SNQ+N  +   +  M +     R P  SD       K +E I   A   N  +   +D 
Sbjct: 493 RSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAELNKKIFETIFYGALEANCELA-AKDG 551

Query: 763 NYNFFG--------FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQI 813
            Y  +          +YDMW G TP++LWDW+ LK KI+K+G+RNSLL+APMPTASTAQI
Sbjct: 552 PYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLRNSLLLAPMPTASTAQI 611

Query: 814 LGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIE 873
           LGNNESFEP+TSNIY RRVLSGEFQVVN HL++DL  +GLW+D MK+ ++ NNGS+Q+IE
Sbjct: 612 LGNNESFEPFTSNIYQRRVLSGEFQVVNRHLVKDLAAIGLWNDTMKNLIMYNNGSVQNIE 671

Query: 874 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 933
            IP +++ LYKTVWE+  +T++ MAADRGAFIDQSQS N+YMAE +Y K++S+HF+ WK+
Sbjct: 672 SIPFEIRQLYKTVWEMSMRTMIRMAADRGAFIDQSQSFNVYMAEPSYGKLTSIHFYAWKM 731

Query: 934 GLKTGMYYLRTKPAANAIQFTIDK 957
           GLKTGMYYLRTKPA N+IQFT+DK
Sbjct: 732 GLKTGMYYLRTKPAVNSIQFTVDK 755



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+FDFL+LKKNTGKEE RAR+LFY LWIPD FMRRVE+DA WSLMC
Sbjct: 292 RPGAFAVYVEPWHADVFDFLDLKKNTGKEEVRARELFYALWIPDLFMRRVETDAMWSLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+     +F+ LY+KYE +G
Sbjct: 352 PMQSPGLAIVTVFEFEALYEKYEKQG 377



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 85/115 (73%), Gaps = 1/115 (0%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I A+Q     A    + N+   IGVQG+AD F+ MR+PF+ + +  LNK+IFETI+YGAL
Sbjct: 481 IDANQCPLREAERSNQRNRPIGIGVQGMADAFVTMRMPFESDAAAELNKKIFETIFYGAL 540

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           EA+CE+AA+DGPY+TY+GSP S+G LQYDMW G TP++LWDW+ LK     YGL+
Sbjct: 541 EANCELAAKDGPYETYKGSPASRGELQYDMWNGATPSNLWDWSLLKSKISKYGLR 595



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 44/55 (80%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             VI ++Y  ++++TG  TPMISD HY II  NADRLNSAI++DRDFNY++FGFK
Sbjct: 94  FNVIVDMYEAIDQKTGAATPMISDFHYGIIAANADRLNSAIMHDRDFNYDYFGFK 148



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AI+++Q+ETGTPYMLYKD+CNRKSNQ NL  I+
Sbjct: 388 LWRAIIEAQVETGTPYMLYKDSCNRKSNQSNLGTIK 423


>gi|395217261|ref|ZP_10401556.1| ribonucleoside diphosphate reductase subunit alpha [Pontibacter sp.
           BAB1700]
 gi|394455058|gb|EJF09608.1| ribonucleoside diphosphate reductase subunit alpha [Pontibacter sp.
           BAB1700]
          Length = 763

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/505 (65%), Positives = 402/505 (79%), Gaps = 12/505 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+LKKN GKEE RARDLFY LW PD FM+RVE +  WSL C
Sbjct: 263 RKGAFAIYLEPWHADIFEFLDLKKNHGKEENRARDLFYALWTPDLFMKRVEQNGDWSLFC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL DSWG+ F+ LY+KYE EG+  + V A+ LWFA+L+SQIETGTPYMLYKDA N
Sbjct: 323 PNEAPGLGDSWGQDFERLYEKYEREGRARKTVKAQDLWFAVLESQIETGTPYMLYKDAAN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP--ADKTYNFTKLKDV 268
            KSNQQNLGTIK SNLCTEI+EYTS+DEVAVCNLAS+AL  YI      KT++  KL DV
Sbjct: 383 SKSNQQNLGTIKSSNLCTEIMEYTSQDEVAVCNLASLALPRYIKEEGGHKTFDHQKLFDV 442

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
              VTKNLNK+ID+N+YPV EARNSNMRHRPIG+GVQGLAD FI +R+PF+ +E+R LNK
Sbjct: 443 TYHVTKNLNKVIDINYYPVPEARNSNMRHRPIGLGVQGLADTFIALRMPFESDEARGLNK 502

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKI 387
            IFETIY+ A+ AS ++A +DG Y+T++GSP+S+G  Q+DMWGVTP +  WDW  L++++
Sbjct: 503 DIFETIYFAAMTASKDLAKKDGAYETFKGSPLSEGKFQFDMWGVTPDSGRWDWEELRQEV 562

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            KHGVRNSLL+APMPTASTAQILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL+ L
Sbjct: 563 VKHGVRNSLLVAPMPTASTAQILGNNESFEPYTSNIYVRRVLSGEFMVVNKHLLKDLISL 622

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+D MK+ +I  NGS+QDI  IPQ +KDLYKTVWEI Q+TV+DM+ADRGA+I QSQSL
Sbjct: 623 GLWNDRMKNAIIAANGSVQDIPSIPQNIKDLYKTVWEISQRTVIDMSADRGAYICQSQSL 682

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N+++  +N+ K++SMHFH WK GLKTGMYYLRTK A +AI+FT++K         + A +
Sbjct: 683 NLHVMNVNFGKLTSMHFHAWKKGLKTGMYYLRTKAAVDAIKFTVEK---------QAAET 733

Query: 568 QEEIQADQEQAMAAMICRRDNKEDC 592
            E +   Q+Q  + M C  DN + C
Sbjct: 734 LEPVYNSQDQNRSDMSCSLDNPDAC 758



 Score =  307 bits (787), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 142/229 (62%), Positives = 178/229 (77%), Gaps = 10/229 (4%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  WDW  L++++ KHGVRNSLL+APMPTASTAQILGNNESFEPYTSNI
Sbjct: 539 FQFDMWGVTPDSGRWDWEELRQEVVKHGVRNSLLVAPMPTASTAQILGNNESFEPYTSNI 598

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL+ LGLW+D MK+ +I  NGS+QDI  IPQ +KDLYKTVW
Sbjct: 599 YVRRVLSGEFMVVNKHLLKDLISLGLWNDRMKNAIIAANGSVQDIPSIPQNIKDLYKTVW 658

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+TV+DM+ADRGA+I QSQSLN+++  +N+ K++SMHFH WK GLKTGMYYLRTK A
Sbjct: 659 EISQRTVIDMSADRGAYICQSQSLNLHVMNVNFGKLTSMHFHAWKKGLKTGMYYLRTKAA 718

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            +AI+FT++K         +   + E +   Q+Q  + M C  DN + C
Sbjct: 719 VDAIKFTVEK---------QAAETLEPVYNSQDQNRSDMSCSLDNPDAC 758



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+LKKN GKEE RARDLFY LW PD FM+RVE +  WSL C
Sbjct: 263 RKGAFAIYLEPWHADIFEFLDLKKNHGKEENRARDLFYALWTPDLFMKRVEQNGDWSLFC 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL DSWG+ F+ LY+KYE EG
Sbjct: 323 PNEAPGLGDSWGQDFERLYEKYEREG 348



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+ +E+R LNK IFETIY+ A+ AS ++A +DG Y+T++GSP+S
Sbjct: 476 LGVQGLADTFIALRMPFESDEARGLNKDIFETIYFAAMTASKDLAKKDGAYETFKGSPLS 535

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G  Q+DMWGVTP +  WDW  L+   + +G++
Sbjct: 536 EGKFQFDMWGVTPDSGRWDWEELRQEVVKHGVR 568



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFA+L+SQIETGTPYMLYKDA N KSNQQNL  I+
Sbjct: 359 LWFAVLESQIETGTPYMLYKDAANSKSNQQNLGTIK 394



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +A+L +++   +   L+K      SN      ++ LY   + +TG    +++   YEII 
Sbjct: 44  YAVLAARVAISS---LHKVTSKSFSN-----TMKRLYTYEDPKTGENASLLAKDVYEIIR 95

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K+A  L+S IIYDRD+NY++FG+K
Sbjct: 96  KHAATLDSTIIYDRDYNYDYFGYK 119


>gi|47225021|emb|CAF97436.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 846

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/438 (74%), Positives = 380/438 (86%), Gaps = 1/438 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL++ WGE+F+ LY  YE EG+  R V A+++W AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PDECPGLNECWGEEFEKLYTSYEKEGRVKRVVKAQQVWHAIIESQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVEYTS DEVAVCNLASIALNMY+ P + T++F KL  V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEYTSSDEVAVCNLASIALNMYVTP-ECTFDFHKLAAVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN QI
Sbjct: 472 VVVRNLNKIIDINYYPVPEAERSNRRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASC++AA  GPY++YEGSPVS+G+LQYDMWG TPT+LWDW  LKE+IA+H
Sbjct: 532 FETIYYAALEASCQLAAELGPYESYEGSPVSKGVLQYDMWGKTPTELWDWQQLKERIARH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES E YTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEAYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK+QLI +NGS+Q+I+GIP  +K LYKTVWEI QKTV+ MAADRGAFIDQSQS+NI+
Sbjct: 652 NEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWEISQKTVIKMAADRGAFIDQSQSMNIH 711

Query: 511 MAEINYAKMSSMHFHGWK 528
           +AE NY K++SMHF+GWK
Sbjct: 712 IAEPNYGKLTSMHFYGWK 729



 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/164 (75%), Positives = 147/164 (89%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPT+LWDW  LKE+IA+HGVRNSLL+APMPTASTAQILGNNES E YTSNIY
Sbjct: 566 LQYDMWGKTPTELWDWQQLKERIARHGVRNSLLLAPMPTASTAQILGNNESIEAYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW+++MK+QLI +NGS+Q+I+GIP  +K LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEDMKNQLIAHNGSVQNIDGIPNDVKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWK 932
           I QKTV+ MAADRGAFIDQSQS+NI++AE NY K++SMHF+GWK
Sbjct: 686 ISQKTVIKMAADRGAFIDQSQSMNIHIAEPNYGKLTSMHFYGWK 729



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+FDFLELKKNTGKEE RARDLFY LWIPD FM+RVES+  WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDVFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVESNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+ C GL++ WGE+F+ LY  YE EG V
Sbjct: 353 PDECPGLNECWGEEFEKLYTSYEKEGRV 380



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 78/99 (78%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   IGVQGLAD FI MR PF+  E++LLN QIFETIYY ALEASC++AA  GPY++
Sbjct: 496 RRHRPIGIGVQGLADAFILMRYPFESPEAQLLNTQIFETIYYAALEASCQLAAELGPYES 555

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           YEGSPVS+G+LQYDMWG TPT+LWDW  LK     +G++
Sbjct: 556 YEGSPVSKGVLQYDMWGKTPTELWDWQQLKERIARHGVR 594



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ A +      +AIL ++I             +++
Sbjct: 39  ITMKVIQGLYSGVTTVEL-DTLAAEISATLTTKHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+LYN VN      +PM+S +  +I+++N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 90  TKKVFSEVMEDLYNYVNPLNRCHSPMVSKETLDIVLQNRDRLNSAIIYDRDFSYNFFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   ++W AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 379 RVKRVVKAQQVWHAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 424


>gi|393909613|gb|EFO27839.2| ribonucleoside-diphosphate reductase large subunit [Loa loa]
          Length = 1048

 Score =  706 bits (1823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/474 (66%), Positives = 393/474 (82%), Gaps = 4/474 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL DSWGE F+ LY +YE EG++ +QVPARKLW  I+ +QIETG PYM+YKD CN
Sbjct: 363 PAECPGLEDSWGEAFEKLYMQYEEEGRYRKQVPARKLWETIVSTQIETGMPYMVYKDTCN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQQNLGTIKCSNLCTE+V Y+S++E+AVCNLASIAL+ +++ ++ T++F  L+++ K
Sbjct: 423 RKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALSRFVS-SEMTFDFKMLREITK 481

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNK+ID N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF   ++R LNK+I
Sbjct: 482 VVVRNLNKVIDRNYYPVPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRI 541

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YY ALEASCE+A   GPY++YE SPVS+GILQ+DMWGVTPT+ WDW  L++KIA +
Sbjct: 542 FETMYYAALEASCELAMEQGPYESYERSPVSRGILQFDMWGVTPTNQWDWETLRKKIAMY 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSN+Y+R VLSG FQV N HL+ DL+ L LW
Sbjct: 602 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQVFNMHLMNDLMRLDLW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK ++I N GSI++IE IPQ+++DLYKTVWE+ Q+ ++DMA DRGAFID SQSLNI+
Sbjct: 662 DDDMKLEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHSQSLNIF 721

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM---ANAMA 561
           +A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA +A+QFT+DKT++   ANA A
Sbjct: 722 IARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRLKDYANANA 775



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 169/200 (84%), Gaps = 3/200 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPT+ WDW  L++KIA +G+RNSLL+APMPTASTAQILGNNES EPYTSN+Y
Sbjct: 576 LQFDMWGVTPTNQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +R VLSG FQV N HL+ DL+ L LWDD+MK ++I N GSI++IE IPQ+++DLYKTVWE
Sbjct: 636 TRNVLSGSFQVFNMHLMNDLMRLDLWDDDMKLEIIKNKGSIRNIERIPQEIRDLYKTVWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + Q+ ++DMA DRGAFID SQSLNI++A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA 
Sbjct: 696 MSQRDIIDMAVDRGAFIDHSQSLNIFIARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAV 755

Query: 949 NAIQFTIDKTKM---ANAMA 965
           +A+QFT+DKT++   ANA A
Sbjct: 756 DAVQFTVDKTRLKDYANANA 775



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL DSWGE F+ LY +YE EG
Sbjct: 363 PAECPGLEDSWGEAFEKLYMQYEEEG 388



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF   ++R LNK+IFET+YY ALEASCE+A   GPY++YE SPVS
Sbjct: 513 IGVQGLADAFILMRYPFTSEKARDLNKRIFETMYYAALEASCELAMEQGPYESYERSPVS 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTPT+ WDW  L+    +YG++
Sbjct: 573 RGILQFDMWGVTPTNQWDWETLRKKIAMYGIR 604



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  I+ +QIETG PYM+YKD CNRK+NQQNL  I+
Sbjct: 398 KLWETIVSTQIETGMPYMVYKDTCNRKTNQQNLGTIK 434



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     GVT  +L + AA ++ A +      +A L S+I             ++K
Sbjct: 49  ISQKVIAGLYKGVTTVELDNLAA-EIAADMITKHPDYATLASRIAVSN--------LHKK 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V + LYN  + ++G   P+IS   ++II  NAD L+SAII++RDF Y +FG K
Sbjct: 100 TEKLFSKVSKRLYNATHPKSGRHMPLISKNIFDIIQNNADILDSAIIHERDFCYTYFGLK 159


>gi|330929115|ref|XP_003302526.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
 gi|311322081|gb|EFQ89385.1| hypothetical protein PTT_14367 [Pyrenophora teres f. teres 0-1]
          Length = 889

 Score =  706 bits (1822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/469 (69%), Positives = 392/469 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE + K    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKQNKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLAS+AL  +++     ++F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESEEAKKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SC+IA   GPYQTYEGSPVSQGILQYDMW VTPTDLWDWA+LK KIA+H
Sbjct: 533 FETIYHAALTSSCDIAKELGPYQTYEGSPVSQGILQYDMWNVTPTDLWDWASLKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I + GSI  I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  300 bits (767), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 165/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWA+LK KIA+HGVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWASLKAKIAEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I + GSI  I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIARIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 29/130 (22%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C GL+D +G++F+ LY+ YE                             K+N G+E 
Sbjct: 353 PNECPGLADVYGDEFEALYESYE-----------------------------KQNKGRET 383

Query: 121 FRARDLFYGL 130
            RA+ L+Y +
Sbjct: 384 VRAQKLWYAI 393



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SC+IA   GPYQTYEGSPVS
Sbjct: 504 MGVQGLADAFLALRLPFESEEAKKLNIQIFETIYHAALTSSCDIAKELGPYQTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWA+LK     +G++
Sbjct: 564 QGILQYDMWNVTPTDLWDWASLKAKIAEHGVR 595



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+E+LY  VN + G   PMISD  Y+II  +A+ LNSAI+YDRDFNY FFGFK
Sbjct: 90  TKKQFSAVVEDLYTYVNPKNGKSQPMISDHVYKIIQDHAEELNSAIVYDRDFNYQFFGFK 149



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|116200095|ref|XP_001225859.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
 gi|88179482|gb|EAQ86950.1| ribonucleoside-diphosphate reductase large chain [Chaetomium
           globosum CBS 148.51]
          Length = 912

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE  G+  + + A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++     Y+F KL +VA+
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNQGVYDFQKLHEVAQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNHYPVQEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   G Y TYEGSPVSQGILQYDMW VTPT LWDW ALK KI +H
Sbjct: 533 FETIYHAALTASCDLAKEQGTYSTYEGSPVSQGILQYDMWNVTPTGLWDWDALKAKIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E +  K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  299 bits (765), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/217 (65%), Positives = 173/217 (79%), Gaps = 4/217 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPT LWDW ALK KI +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTGLWDWDALKAKIKEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPTDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M E +  K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMREPSMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985
             IQFT+D+     A+  +DT   + +   +++A  A
Sbjct: 747 QPIQFTVDQ----EALRVQDTNVSKGVSGLKKRAPPA 779



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAG 378



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL ASC++A   G Y TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASCDLAKEQGTYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPT LWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVTPTGLWDWDALKAKIKEHGVR 595



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMI+ + YE +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVVSDLYHYVNPKNERASPMIAKETYECVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|367054108|ref|XP_003657432.1| hypothetical protein THITE_2123125 [Thielavia terrestris NRRL 8126]
 gi|347004698|gb|AEO71096.1| hypothetical protein THITE_2123125 [Thielavia terrestris NRRL 8126]
          Length = 912

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EG+  + V A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREGRGRKTVRAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRGSNLCTEIIEYSAPDEVAVCNLASLALPAFVDYNEGVYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNRIIDINHYPVKEAYNSNMRHRPIGVGVQGLADTFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A  +GPY TYEGSPVSQGILQYDMW V P+DLWDW ALK +I +H
Sbjct: 533 FETIYHAALTASCKLAQEEGPYSTYEGSPVSQGILQYDMWNVKPSDLWDWDALKAQIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAAGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW ALK +I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSDLWDWDALKAQIKEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIAAGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREG 378



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL ASC++A  +GPY TYEGSPVS
Sbjct: 504 VGVQGLADTFLALRMPFESPEARELNKQIFETIYHAALTASCKLAQEEGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P+DLWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVKPSDLWDWDALKAQIKEHGVR 595



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMIS + YE +M++ D L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVVSDLYHYVNPKNGRPSPMISKETYECVMRHKDELDSAIVYDRDFNYQYFGFK 149



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|302418985|ref|XP_003007323.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
 gi|261352974|gb|EEY15402.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           albo-atrum VaMs.102]
          Length = 903

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/497 (65%), Positives = 400/497 (80%), Gaps = 2/497 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE  GK  + + A+KLW+A+L++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAGKGRKTIKAQKLWYAVLEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  Y++  +  Y+F KL  V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDFKKLHQVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E++ LNKQI
Sbjct: 473 VVVRNLNRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEAKELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  SC++A  +GPY TYEGSPVSQGILQYDMW V PTDLWDWA LK +I +H
Sbjct: 533 FETIYHAALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWNVKPTDLWDWADLKSQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKDARSQ 568
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+DK   K+A+    K+   +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDKEALKVADTNVGKERSLK 772

Query: 569 EEIQADQEQAMAAMICR 585
           +        + AA + R
Sbjct: 773 KRSPMPSYNSSAAAVPR 789



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 173/223 (77%), Gaps = 2/223 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDWA LK +I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPTDLWDWADLKSQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D+MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICR 989
             IQFT+DK   K+A+    K+   ++        + AA + R
Sbjct: 747 APIQFTVDKEALKVADTNVGKERSLKKRSPMPSYNSSAAAVPR 789



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAG 378



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E++ LNKQIFETIY+ AL  SC++A  +GPY TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFESPEAKELNKQIFETIYHAALTMSCKLAQEEGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDWA LK     +G++
Sbjct: 564 QGILQYDMWNVKPTDLWDWADLKSQIKQHGVR 595



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMI+ + YE +MK+ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNNRPSPMIAPETYEFVMKHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+A+L++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYAVLEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|296827688|ref|XP_002851208.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
 gi|238838762|gb|EEQ28424.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           otae CBS 113480]
          Length = 874

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/466 (69%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE EG+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGEEFEALYEKYEKEGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 473 VVVKNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW ALK +I+KH
Sbjct: 533 FETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDALKTEISKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 163/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALK +I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDALKTEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 79/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 492 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQIFETLYHAALTASCELAKAD 551

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW ALK     +G++
Sbjct: 552 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDALKTEISKHGVR 595



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGEEFEALYEKYEKEG 378



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 423


>gi|396462063|ref|XP_003835643.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Leptosphaeria maculans JN3]
 gi|312212194|emb|CBX92278.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Leptosphaeria maculans JN3]
          Length = 903

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/466 (69%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE +GK    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKKGKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  +++     ++F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPSFVDYKRGEFDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESPEAKKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SC+IA   GPY+TY GSPVSQGILQYDMW VTPTDLWDWAALKEKIA++
Sbjct: 533 FETIYHAALTSSCDIAKELGPYETYAGSPVSQGILQYDMWNVTPTDLWDWAALKEKIAQY 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I   GSI  I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 139/192 (72%), Positives = 163/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWAALKEKIA++GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWAALKEKIAQYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I   GSI  I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+ YE +G
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKKG 378



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SC+IA   GPY+TY GSPVS
Sbjct: 504 MGVQGLADAFLALRLPFESPEAKKLNIQIFETIYHAALTSSCDIAKELGPYETYAGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWAALK     YG++
Sbjct: 564 QGILQYDMWNVTPTDLWDWAALKEKIAQYGVR 595



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 69/120 (57%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G   PMISDK Y+I+M +AD LNSA++YDRDFNY FFGFK
Sbjct: 90  TKKQFSAVVHDLYSYVNPKNGKSQPMISDKVYKIVMAHADELNSAVVYDRDFNYQFFGFK 149



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|346979155|gb|EGY22607.1| ribonucleoside-diphosphate reductase large chain [Verticillium
           dahliae VdLs.17]
          Length = 903

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/497 (65%), Positives = 400/497 (80%), Gaps = 2/497 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE  GK  + + A+KLW+A+L++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAGKGRKTIKAQKLWYAVLEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  Y++  +  Y+F KL  V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAYVDYNNGVYDFKKLHQVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E++ LNKQI
Sbjct: 473 VVVRNLNRIIDVNHYPVIEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEAKELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  SC++A  +GPY TYEGSPVSQGILQYDMW V PTDLWDWA LK +I +H
Sbjct: 533 FETIYHAALTMSCKLAQEEGPYSTYEGSPVSQGILQYDMWNVKPTDLWDWADLKSQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKDARSQ 568
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+DK   K+A+    K+   +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDKEALKVADTNVGKERSLK 772

Query: 569 EEIQADQEQAMAAMICR 585
           +        + AA + R
Sbjct: 773 KRSPMPSYNSSAAAVPR 789



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 143/223 (64%), Positives = 173/223 (77%), Gaps = 2/223 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDWA LK +I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPTDLWDWADLKSQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D+MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPADIKSLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICR 989
             IQFT+DK   K+A+    K+   ++        + AA + R
Sbjct: 747 APIQFTVDKEALKVADTNVGKERSLKKRSPMPSYNSSAAAVPR 789



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEKAG 378



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E++ LNKQIFETIY+ AL  SC++A  +GPY TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFESPEAKELNKQIFETIYHAALTMSCKLAQEEGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDWA LK     +G++
Sbjct: 564 QGILQYDMWNVKPTDLWDWADLKSQIKQHGVR 595



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMI+ + YE +MK+ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNNRPSPMIAPETYEFVMKHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+A+L++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYAVLEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|389624205|ref|XP_003709756.1| ribonucleoside-diphosphate reductase large subunit [Magnaporthe
           oryzae 70-15]
 gi|351649285|gb|EHA57144.1| ribonucleoside-diphosphate reductase large subunit [Magnaporthe
           oryzae 70-15]
 gi|440467397|gb|ELQ36621.1| ribonucleoside-diphosphate reductase large chain [Magnaporthe
           oryzae Y34]
 gi|440486678|gb|ELQ66519.1| ribonucleoside-diphosphate reductase large chain [Magnaporthe
           oryzae P131]
          Length = 909

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 388/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE  GK  + + A+KLW++IL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQAGKGRKTIKAQKLWYSILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++     Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYHKGEYDFEKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKII+VN+YPV+EARNSNMRHRPIG+GVQGLAD F+ +RLPF+  E+R LNK+I
Sbjct: 473 VVVRNLNKIIEVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPEARDLNKKI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW V P+DLWDW ALK  I +H
Sbjct: 533 FETIYHAALTASCKLAEEQGPYSTYEGSPVSQGILQYDMWNVKPSDLWDWDALKANIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLVELGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVELGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+++I   GSIQ+I  IP+  K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW ALK  I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSDLWDWDALKANIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLVELGLW D+MK+++I   GSIQ+I  IP+  K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVELGLWSDDMKNRIIAEGGSIQNIASIPEDTKKLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQAG 378



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E+R LNK+IFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRLPFESPEARDLNKKIFETIYHAALTASCKLAEEQGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P+DLWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVKPSDLWDWDALKANIKQHGVR 595



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +L++ VN + G  +PMI+   Y+ +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQFSSVVSDLFHYVNPKNGKLSPMIAQDTYDCVMRHKEDLDSAIVYDRDFNYQYFGFK 149



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|430813498|emb|CCJ29155.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 848

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/507 (65%), Positives = 406/507 (80%), Gaps = 5/507 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIF+FL+L+KN GKEE RARDLFYGLWIPD FM+RVE++  WSL C
Sbjct: 293 RPGAFAIYIEPWHADIFEFLDLRKNHGKEEIRARDLFYGLWIPDLFMKRVEANQDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D +GE+F+ LY+KYE E +  R V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLDDVYGEEFEVLYEKYEQEKRATRIVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+EY+S DEVAVCNLASIAL  +I+     Y+F KL DV K
Sbjct: 413 RKSNQKNLGTIKCSNLCTEIIEYSSPDEVAVCNLASIALPTFIDKG--IYDFQKLHDVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN+YPVEEAR SN RHRPIGIGVQGLAD F+ +R+PFD   ++ LN +I
Sbjct: 471 VVARNLNKIIDVNYYPVEEARRSNKRHRPIGIGVQGLADAFLSLRMPFDSPHAKELNIKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A  +GPY+TYEGSP SQGILQYDMW V PTDLWDW +LK  IA++
Sbjct: 531 FETIYHAALEASCELAQEEGPYETYEGSPASQGILQYDMWNVVPTDLWDWDSLKVNIARY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 591 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I NNGSIQ+I  IP ++K LYKTVWE+ QKT++D AADRGAFIDQSQSLNI+
Sbjct: 651 NDIMKNRIIANNGSIQNIPSIPAEIKALYKTVWELSQKTIIDYAADRGAFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA---MASKDARS 567
           + + ++ K++ MHF GW+ GLKTGMYYLRT+ A+  IQFT+D+  +      +  K   +
Sbjct: 711 IRDPSFGKITGMHFWGWRKGLKTGMYYLRTQAASAPIQFTVDRKALEEVDETVLKKRPST 770

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIG 594
            + I       + ++  ++ N ED I 
Sbjct: 771 LKHIGISMNPLVESLDDKKTNSEDTIS 797



 Score =  285 bits (730), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 163/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW +LK  IA++G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 565 LQYDMWNVVPTDLWDWDSLKVNIARYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW+D MK+++I NNGSIQ+I  IP ++K LYKTVWE
Sbjct: 625 SRRVLAGEFQVVNPWLLKDLVDLGLWNDIMKNRIIANNGSIQNIPSIPAEIKALYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QKT++D AADRGAFIDQSQSLNI++ + ++ K++ MHF GW+ GLKTGMYYLRT+ A+
Sbjct: 685 LSQKTIIDYAADRGAFIDQSQSLNIHIRDPSFGKITGMHFWGWRKGLKTGMYYLRTQAAS 744

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 745 APIQFTVDRKAL 756



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR NK      IGVQGLAD F+ +R+PFD   ++ LN +IFETIY+ ALEASCE+A  +
Sbjct: 490 ARRSNKRHRPIGIGVQGLADAFLSLRMPFDSPHAKELNIKIFETIYHAALEASCELAQEE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSP SQGILQYDMW V PTDLWDW +LKV    YGL+
Sbjct: 550 GPYETYEGSPASQGILQYDMWNVVPTDLWDWDSLKVNIARYGLR 593



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 71/85 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIF+FL+L+KN GKEE RARDLFYGLWIPD FM+RVE++  WSL C
Sbjct: 293 RPGAFAIYIEPWHADIFEFLDLRKNHGKEEIRARDLFYGLWIPDLFMKRVEANQDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL D +GE+F+ LY+KYE E
Sbjct: 353 PNEAPGLDDVYGEEFEVLYEKYEQE 377



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVTTIELDNLAA-ETAAYMTTKHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +    VI +LY+ VN      +PMIS K YE +M++A+ L+SAIIYDRDF YN+FGFK
Sbjct: 90  TKKVFSHVISDLYHYVNPRNNKPSPMISLKTYETVMRHANELDSAIIYDRDFTYNYFGFK 149



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I+
Sbjct: 383 IVKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTIK 424


>gi|358058031|dbj|GAA96276.1| hypothetical protein E5Q_02942 [Mixia osmundae IAM 14324]
          Length = 980

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/463 (69%), Positives = 392/463 (84%), Gaps = 1/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L C
Sbjct: 401 RPGAFAIYIEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDMFMRRVEQNGDWPLFC 460

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL++ +G++FD L++KYE EG+  + + A+KLW+AIL+SQ+ETG P+MLYKDA N
Sbjct: 461 PAEAPGLAEVYGKEFDALFEKYEKEGRAKKTIKAQKLWYAILESQVETGNPFMLYKDAAN 520

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  ++     TY+F KL DV K
Sbjct: 521 SKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTFVT-GKGTYDFQKLHDVTK 579

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN+IIDVN+YPV EARNSNMRHRPIGIGVQGLAD F+ +RLPFD   ++ LN QI
Sbjct: 580 VVTRNLNRIIDVNYYPVIEARNSNMRHRPIGIGVQGLADAFMALRLPFDSPAAKKLNIQI 639

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ +LEAS +IAA DGPY TYEGSP+S+G LQ+DMWG TPTDLWDW +L+EKIAK 
Sbjct: 640 FETIYHASLEASSDIAAVDGPYSTYEGSPISKGELQFDMWGKTPTDLWDWDSLREKIAKT 699

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LLRDLVELGLW
Sbjct: 700 GTRNSLLMAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLRDLVELGLW 759

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD +K+++I +NGSI +I GIPQ LK +Y+TVWEI QK+++DM+ADRGA+IDQSQSLNI+
Sbjct: 760 DDELKNRIIAHNGSIANINGIPQDLKAIYRTVWEISQKSIIDMSADRGAYIDQSQSLNIH 819

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +    +A+++SM+F+GWK GLKTGMYYLRTK AA+AIQFT+ +
Sbjct: 820 LQSPTFAQLTSMNFYGWKKGLKTGMYYLRTKAAASAIQFTVSQ 862



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/189 (70%), Positives = 166/189 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWG TPTDLWDW +L+EKIAK G RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 674 LQFDMWGKTPTDLWDWDSLREKIAKTGTRNSLLMAPMPTASTSQILGFNECFEPYTSNIY 733

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LLRDLVELGLWDD +K+++I +NGSI +I GIPQ LK +Y+TVWE
Sbjct: 734 SRRVLAGEFQIVNPWLLRDLVELGLWDDELKNRIIAHNGSIANINGIPQDLKAIYRTVWE 793

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK+++DM+ADRGA+IDQSQSLNI++    +A+++SM+F+GWK GLKTGMYYLRTK AA
Sbjct: 794 ISQKSIIDMSADRGAYIDQSQSLNIHLQSPTFAQLTSMNFYGWKKGLKTGMYYLRTKAAA 853

Query: 949 NAIQFTIDK 957
           +AIQFT+ +
Sbjct: 854 SAIQFTVSQ 862



 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L C
Sbjct: 401 RPGAFAIYIEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDMFMRRVEQNGDWPLFC 460

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL++ +G++FD L++KYE EG
Sbjct: 461 PAEAPGLAEVYGKEFDALFEKYEKEG 486



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 69/83 (83%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +RLPFD   ++ LN QIFETIY+ +LEAS +IAA DGPY TYEGSP+S
Sbjct: 611 IGVQGLADAFMALRLPFDSPAAKKLNIQIFETIYHASLEASSDIAAVDGPYSTYEGSPIS 670

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G LQ+DMWG TPTDLWDW +L+
Sbjct: 671 KGELQFDMWGKTPTDLWDWDSLR 693



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 151 VISGVYQ----GVTTVELDNLAA-ETAAYMTTRHPDYAILAARIAISN--------LHKE 197

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +    V+E+LY  VN +    +PMISD+ Y+ +M+NAD LNSA+IYDRDFNYN+FGFK
Sbjct: 198 TKKTFSSVVEDLYRWVNPKNNKASPMISDETYKAVMENADVLNSAVIYDRDFNYNYFGFK 257



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL+SQ+ETG P+MLYKDA N KSNQ+NL  I+
Sbjct: 496 KLWYAILESQVETGNPFMLYKDAANSKSNQKNLGTIK 532


>gi|70994760|ref|XP_752157.1| ribonucleotide reductase large subunit Rnr1 [Aspergillus fumigatus
           Af293]
 gi|66849791|gb|EAL90119.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           fumigatus Af293]
 gi|159124928|gb|EDP50045.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           fumigatus A1163]
          Length = 859

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LW PD FM+RVES+  W+L C
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYERYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIIDVN+YPV EA+ SNMRHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL ASCE+A   GPY+TYEGSPVSQGILQYDMW  TPTDLWDW +LK KIA+H
Sbjct: 533 FETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTPTDLWDWDSLKAKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+T+L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW +LK KIA+HGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDSLKAKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T+L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRTILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LW PD FM+RVES+  W+L C
Sbjct: 293 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYERYEKEG 378



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+GAL ASCE+A   GPY+TYEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK     +G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDSLKAKIAQHGVR 595



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEI+MK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYVNPKNKQPAPMISKETYEIVMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|452004087|gb|EMD96543.1| hypothetical protein COCHEDRAFT_1220161 [Cochliobolus
           heterostrophus C5]
          Length = 897

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/469 (68%), Positives = 389/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE + K    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKQNKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLAS+AL  +++     ++F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESAEAKKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SC+IA   GPY+TYEGSPVSQGILQYDMW VTPTDLWDWA LK KIA+H
Sbjct: 533 FETIYHAALTSSCDIAKELGPYETYEGSPVSQGILQYDMWNVTPTDLWDWAELKAKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I   GSI  I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +  A
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEALKVA 761



 Score =  298 bits (764), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWA LK KIA+HGVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWAELKAKIAQHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I   GSI  I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+  +  A
Sbjct: 747 APIQFTVDQEALKVA 761



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 29/130 (22%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C GL+D +G++F+ LY+ YE                             K+N G+E 
Sbjct: 353 PNECPGLADVYGDEFEALYESYE-----------------------------KQNKGRET 383

Query: 121 FRARDLFYGL 130
            RA+ L+Y +
Sbjct: 384 VRAQKLWYAI 393



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SC+IA   GPY+TYEGSPVS
Sbjct: 504 MGVQGLADAFLALRLPFESAEAKKLNIQIFETIYHAALTSSCDIAKELGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWA LK     +G++
Sbjct: 564 QGILQYDMWNVTPTDLWDWAELKAKIAQHGVR 595



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GV  T L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVNTTQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LYN VN + G   PMISD  Y++I  +A+ LNSAI+YDRDFNY FFGFK
Sbjct: 90  TKKQFSAVVADLYNYVNPKNGKHQPMISDSVYKVIQDHAEELNSAIVYDRDFNYQFFGFK 149



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|320593756|gb|EFX06165.1| ribonucleotide reductase large subunit [Grosmannia clavigera
           kw1407]
          Length = 913

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 392/466 (84%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFCIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C G++D +GE+F+ LY+KYE EG+  + V A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGMADCYGEEFEALYEKYEREGRGRKTVKAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++  ++TY+F KL +VA+
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPSFVDYTNETYDFKKLHEVAQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN +IDVN+YPV EA+NSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 LVVRNLNHVIDVNYYPVPEAKNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASCE+A  +G Y TYEGSPVSQGILQ DMW V P+DLWDW +L+ KI +H
Sbjct: 533 FETIYHAALTASCELAKIEGTYSTYEGSPVSQGILQPDMWDVKPSDLWDWDSLRLKIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQQAL 758



 Score =  292 bits (747), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/203 (68%), Positives = 164/203 (80%), Gaps = 4/203 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+DLWDW +L+ KI +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 570 DMWDVKPSDLWDWDSLRLKIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 629

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VL+GEFQVVN  LL+DLV++GLW DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q
Sbjct: 630 VLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQ 689

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ AA  I
Sbjct: 690 RTIVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPI 749

Query: 952 QFTIDKTKMANAMASKDTRSQEE 974
           QFT+D+     A+   DT S  E
Sbjct: 750 QFTVDQ----QALLVADTNSGRE 768



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFCIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C G++D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGMADCYGEEFEALYEKYEREG 378



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL ASCE+A  +G Y TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASCELAKIEGTYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ DMW V P+DLWDW +L++    +G++
Sbjct: 564 QGILQPDMWDVKPSDLWDWDSLRLKIKEHGVR 595



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +A+L ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAVLAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +LYN VN    T +PMIS + Y+ +M++ +  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVITDLYNYVNPRNNTLSPMISKETYDCVMRHKEDFDSAIVYDRDFNYQYFGFK 149



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|451855061|gb|EMD68353.1| hypothetical protein COCSADRAFT_33284 [Cochliobolus sativus ND90Pr]
          Length = 897

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/469 (68%), Positives = 389/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE + K    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKQNKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLAS+AL  +++     ++F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASLALPSFVDYKRGEFDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGMGVQGLADAFLALRLPFESAEAKKLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SC+IA   GPY+TYEGSPVSQGILQYDMW VTPTDLWDWA LK KIA+H
Sbjct: 533 FETIYHAALTSSCDIAKELGPYETYEGSPVSQGILQYDMWNVTPTDLWDWAELKAKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I   GSI  I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIAEGGSIARIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +  A
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEALKVA 761



 Score =  298 bits (764), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWA LK KIA+HGVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWAELKAKIAQHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I   GSI  I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIAEGGSIARIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+  +  A
Sbjct: 747 APIQFTVDQEALKVA 761



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 29/130 (22%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C GL+D +G++F+ LY+ YE                             K+N G+E 
Sbjct: 353 PNECPGLADVYGDEFEALYESYE-----------------------------KQNKGRET 383

Query: 121 FRARDLFYGL 130
            RA+ L+Y +
Sbjct: 384 VRAQKLWYAI 393



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SC+IA   GPY+TYEGSPVS
Sbjct: 504 MGVQGLADAFLALRLPFESAEAKKLNIQIFETIYHAALTSSCDIAKELGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWA LK     +G++
Sbjct: 564 QGILQYDMWNVTPTDLWDWAELKAKIAQHGVR 595



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GV  T L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVNTTQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LYN VN + G   PMISD  Y+II  +A+ LNSAI+YDRDFNY FFGFK
Sbjct: 90  TKKQFSAVVADLYNYVNPKNGKHQPMISDFVYKIIQDHAEELNSAIVYDRDFNYQFFGFK 149



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|327351615|gb|EGE80472.1| ribonucleoside-diphosphate reductase [Ajellomyces dermatitidis ATCC
           18188]
          Length = 886

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/469 (68%), Positives = 389/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+FD LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEGRGKKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++P    Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ +L ASCE+A  DGPY TYEGSPVSQGILQYDMW VTPTDLWDW +LK+ IAKH
Sbjct: 533 FETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTPTDLWDWDSLKQDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 165/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK+ IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I + GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+FD LY+KYE EG
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEG 378



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 73/91 (80%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ +L ASCE+A  DGPY TYEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFESPEAKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWNVTPTDLWDWDSLKQDIAKHGVR 595



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N +     PMIS   YE +M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTYETVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|312130871|ref|YP_003998211.1| ribonucleoside-diphosphate reductase subunit alpha [Leadbetterella
           byssophila DSM 17132]
 gi|311907417|gb|ADQ17858.1| ribonucleoside-diphosphate reductase, alpha subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 820

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/524 (62%), Positives = 411/524 (78%), Gaps = 23/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+FL LKKN GKEE RARDLFY LW PD FM+RVE++A WSL C
Sbjct: 293 RKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANADWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++GE F+ LY KYEAEGK  + +PA++LWF IL+SQ+ETGTPYMLYKDA N
Sbjct: 353 PHECPGLADTYGEDFERLYTKYEAEGKARKTIPAQELWFQILESQVETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN---PADKTYNFTKLKD 267
           +KSNQ+NLGTIK SNLCTEI+EYT+ DEVAVCNLASIAL  ++N   PA  +++F KL +
Sbjct: 413 KKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVNTEGPA-PSFDFQKLYE 471

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+VT+NLN+IID+N+YPV EA NSN RHRPIG+G+QGLAD FI MR PFD  E++ LN
Sbjct: 472 VTKVVTRNLNRIIDINYYPVPEAENSNKRHRPIGLGIQGLADAFILMRFPFDSEEAQKLN 531

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + +FET+Y+ A+E S E+A  +GPY ++EGSP+S+GI Q+DMW VTP + LWDW  L++K
Sbjct: 532 RDVFETLYFAAMETSMELAKEEGPYSSFEGSPISKGIFQFDMWDVTPDSGLWDWEDLRKK 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGEF VVN HLLRDLV+
Sbjct: 592 VMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLRDLVK 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           +GLW+D MK++LI  NGS+Q I  IP+ LK LYKT WEI QK+++DM+ADRGA+I QSQS
Sbjct: 652 IGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAWEIKQKSIIDMSADRGAYICQSQS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LNI+M + N+AK++SMHF+ WK GLKTGMYYLRTK AA+A++FT+D+  +A      +  
Sbjct: 712 LNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKFTVDRQAIAETSPVTETI 771

Query: 567 SQEEI------------------QADQEQAMAAMICRRDNKEDC 592
            ++ +                    ++EQ  AAM C  DN E C
Sbjct: 772 QEKPLDYKGYAKEQAEKAAASFQMTEEEQKYAAMQCSLDNPEGC 815



 Score =  305 bits (780), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/247 (58%), Positives = 184/247 (74%), Gaps = 19/247 (7%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW VTP + LWDW  L++K+ +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 569 FQFDMWDVTPDSGLWDWEDLRKKVMEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 628

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           YSRRVLSGEF VVN HLLRDLV++GLW+D MK++LI  NGS+Q I  IP+ LK LYKT W
Sbjct: 629 YSRRVLSGEFVVVNKHLLRDLVKIGLWNDTMKNKLIAANGSVQQIPEIPEDLKALYKTAW 688

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK+++DM+ADRGA+I QSQSLNI+M + N+AK++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 689 EIKQKSIIDMSADRGAYICQSQSLNIFMTDPNFAKLTSMHFYAWKAGLKTGMYYLRTKAA 748

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEI------------------QADQEQAMAAMICR 989
           A+A++FT+D+  +A      +T  ++ +                    ++EQ  AAM C 
Sbjct: 749 ADAVKFTVDRQAIAETSPVTETIQEKPLDYKGYAKEQAEKAAASFQMTEEEQKYAAMQCS 808

Query: 990 RDNKEDC 996
            DN E C
Sbjct: 809 LDNPEGC 815



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+FL LKKN GKEE RARDLFY LW PD FM+RVE++A WSL C
Sbjct: 293 RKGSFAIYLEPWHADIFEFLNLKKNHGKEEERARDLFYALWTPDLFMKRVEANADWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++GE F+ LY KYEAEG
Sbjct: 353 PHECPGLADTYGEDFERLYTKYEAEG 378



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI MR PFD  E++ LN+ +FET+Y+ A+E S E+A  +GPY ++EGSP+S
Sbjct: 506 LGIQGLADAFILMRFPFDSEEAQKLNRDVFETLYFAAMETSMELAKEEGPYSSFEGSPIS 565

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GI Q+DMW VTP + LWDW  L+   + +G++
Sbjct: 566 KGIFQFDMWDVTPDSGLWDWEDLRKKVMEHGVR 598



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQ+ETGTPYMLYKDA N+KSNQ+NL  I+
Sbjct: 388 ELWFQILESQVETGTPYMLYKDAANKKSNQKNLGTIK 424



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L D  A +  A +      +AIL +++       L+K+     S    L     
Sbjct: 50  GVTTSEL-DTLAAETAASMTTKHPDYAILAARVAISN---LHKNTLKSFSGTMKL----- 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  V+ +TG    +IS + ++II  NA  L+S+IIYDRDF Y+FFG+K
Sbjct: 101 LYQYVDPKTGENAALISKETWKIIQANAALLDSSIIYDRDFGYDFFGYK 149


>gi|452985233|gb|EME84990.1| hypothetical protein MYCFIDRAFT_214917 [Pseudocercospora fijiensis
           CIRAD86]
          Length = 914

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/463 (68%), Positives = 389/463 (84%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLF+ LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVLAFMDLRKNHGKEEVRARDLFFALWIPDLFMKRVEENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY++YE EG+    V A+K+W+AIL++Q ETG P++LYKDACN
Sbjct: 353 PNECPGLADVYGEEFEKLYEQYEKEGRGRETVRAQKIWYAILEAQTETGGPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLASIAL  Y++  ++TY+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASIALPTYVDIENETYDFKKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK I++N YPV EAR SN RHRPIG+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 473 VVTRNLNKTIEINHYPVPEARKSNFRHRPIGLGVQGLADAFLALRMPFDSPEARRLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASCE+A + GPY+TYEGSPVS+G LQYDMWGVTPTDLWDW ALK KIA+H
Sbjct: 533 FETIYHAALTASCELAEKLGPYETYEGSPVSKGELQYDMWGVTPTDLWDWTALKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QI+G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDRGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I + GSIQ I  IP  LK LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADGGSIQRIPNIPDDLKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+
Sbjct: 713 MKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQ 755



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 160/189 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW ALK KIA+HGVRNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWTALKAKIAEHGVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+ GLW +NMK+++I + GSIQ I  IP  LK LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDRGLWSENMKNRIIADGGSIQRIPNIPDDLKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDK 957
             IQFT+D+
Sbjct: 747 APIQFTVDQ 755



 Score =  142 bits (359), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLF+ LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVLAFMDLRKNHGKEEVRARDLFFALWIPDLFMKRVEENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY++YE EG
Sbjct: 353 PNECPGLADVYGEEFEKLYEQYEKEG 378



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ AL ASCE+A + GPY+TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFDSPEARRLNIQIFETIYHAALTASCELAEKLGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMWGVTPTDLWDW ALK     +G++
Sbjct: 564 KGELQYDMWGVTPTDLWDWTALKAKIAEHGVR 595



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VINGVYQ----GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +T    PMISD  Y ++MK+AD LNSAI+YDRDFNY +FGFK
Sbjct: 90  TKKQFSAVVSDLYHYVNPKTRKAAPMISDYTYNVVMKHADELNSAIVYDRDFNYQYFGFK 149



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   K+W+AIL++Q ETG P++LYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKIWYAILEAQTETGGPFILYKDACNRKSNQKNLGTI 423


>gi|295659650|ref|XP_002790383.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           sp. 'lutzii' Pb01]
 gi|226281835|gb|EEH37401.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           sp. 'lutzii' Pb01]
          Length = 878

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/469 (68%), Positives = 390/469 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEGRGKKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 473 VVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKLLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A  DGPY +YEGSPVSQGILQYDMWGVTPTDLWDW +LK++IAKH
Sbjct: 533 FETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTPTDLWDWDSLKQEIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  302 bits (774), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 167/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW +LK++IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/91 (69%), Positives = 74/91 (81%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++LLN QIFETIY+  L ASCE+A  DGPY +YEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFDSPEAKLLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMWGVTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWGVTPTDLWDWDSLKQEIAKHGVR 595



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N +     PMIS   YEI+M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNRRPAPMISQSTYEIVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|261197195|ref|XP_002625000.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239595630|gb|EEQ78211.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis SLH14081]
 gi|239606620|gb|EEQ83607.1| ribonucleotide reductase large subunit Rnr1 [Ajellomyces
           dermatitidis ER-3]
          Length = 886

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/469 (68%), Positives = 389/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+FD LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEGRGKKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++P    Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVVRNLNKIIDGNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFESPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ +L ASCE+A  DGPY TYEGSPVSQGILQYDMW VTPTDLWDW +LK+ IAKH
Sbjct: 533 FETIYHASLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTPTDLWDWDSLKQDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  298 bits (763), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 165/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK+ IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I + GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+FD LY+KYE EG
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEG 378



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 73/91 (80%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ +L ASCE+A  DGPY TYEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFESPEAKQLNIQIFETIYHASLTASCELAKIDGPYSTYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWNVTPTDLWDWDSLKQDIAKHGVR 595



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N +     PMIS   YE +M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQGTYETVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|408672794|ref|YP_006872542.1| ribonucleoside-diphosphate reductase, alpha subunit [Emticicia
           oligotrophica DSM 17448]
 gi|387854418|gb|AFK02515.1| ribonucleoside-diphosphate reductase, alpha subunit [Emticicia
           oligotrophica DSM 17448]
          Length = 823

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/526 (62%), Positives = 411/526 (78%), Gaps = 24/526 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIF+FL+L+KN GKEE RARDLFY LWI D FM+RVE++  WSL C
Sbjct: 293 RKGSFAIYIEPWHADIFEFLDLRKNHGKEELRARDLFYALWISDLFMKRVEANDTWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE+F+ LY+KYE EGK  + + A+ LWFAI++SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLSDCYGEEFEKLYEKYELEGKARKTIKAQDLWFAIMESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKLK 266
           +KSNQ+NLGTIK SNLCTEI+EYT+ DEVAVCNLASIAL  YI   +KT    ++  KL 
Sbjct: 413 KKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKYIVKDEKTGFMKFDHEKLY 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +V K++TKNLNK+IDVN+YPV EA  SN+RHRPIG+GVQGLAD FI +R+PF+ +E+R L
Sbjct: 473 EVTKVITKNLNKVIDVNYYPVIEAERSNLRHRPIGLGVQGLADTFITLRMPFESDEARRL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKE 385
           NK+IFETIY+ A+E+S E+A  DGPY T+EGSP+SQGI Q+DMWGV+P +  W+W  L+E
Sbjct: 533 NKEIFETIYFAAMESSMEMAMADGPYSTWEGSPISQGIFQFDMWGVSPDSGRWNWEELRE 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           K+  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV
Sbjct: 593 KVKTHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLV 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           ++GLW+D MK++LI  NGS+Q I  IPQ LKDLY+T WEI QKT++DMAADRGAFI QSQ
Sbjct: 653 KIGLWNDTMKNKLIAANGSVQGIAEIPQNLKDLYRTAWEIKQKTIIDMAADRGAFICQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLNI+M   N+ K++SMHF+ WK GLKTGMYYLRTK A++A++FT+D+  +A  + +  A
Sbjct: 713 SLNIFMENANFGKLTSMHFYAWKAGLKTGMYYLRTKAASDAVKFTVDRQAIAEVVPATSA 772

Query: 566 RSQEEI-------------------QADQEQAMAAMICRRDNKEDC 592
            S++ +                    ++ E   AAM C  D+ E C
Sbjct: 773 VSEKPLDYVKYAEEQTAKATAAATFSSEAEYQYAAMQCSLDDPEGC 818



 Score =  302 bits (774), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 142/248 (57%), Positives = 182/248 (73%), Gaps = 20/248 (8%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGV+P +  W+W  L+EK+  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 571 FQFDMWGVSPDSGRWNWEELREKVKTHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 630

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV++GLW+D MK++LI  NGS+Q I  IPQ LKDLY+T W
Sbjct: 631 YTRRVLSGEFVVVNKHLLKDLVKIGLWNDTMKNKLIAANGSVQGIAEIPQNLKDLYRTAW 690

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKT++DMAADRGAFI QSQSLNI+M   N+ K++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 691 EIKQKTIIDMAADRGAFICQSQSLNIFMENANFGKLTSMHFYAWKAGLKTGMYYLRTKAA 750

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEI-------------------QADQEQAMAAMIC 988
           ++A++FT+D+  +A  + +    S++ +                    ++ E   AAM C
Sbjct: 751 SDAVKFTVDRQAIAEVVPATSAVSEKPLDYVKYAEEQTAKATAAATFSSEAEYQYAAMQC 810

Query: 989 RRDNKEDC 996
             D+ E C
Sbjct: 811 SLDDPEGC 818



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIF+FL+L+KN GKEE RARDLFY LWI D FM+RVE++  WSL C
Sbjct: 293 RKGSFAIYIEPWHADIFEFLDLRKNHGKEELRARDLFYALWISDLFMKRVEANDTWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GLSD +GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLSDCYGEEFEKLYEKYELEG 378



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+ +E+R LNK+IFETIY+ A+E+S E+A  DGPY T+EGSP+S
Sbjct: 508 LGVQGLADTFITLRMPFESDEARRLNKEIFETIYFAAMESSMEMAMADGPYSTWEGSPIS 567

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QGI Q+DMWGV+P +  W+W  L+     +G++
Sbjct: 568 QGIFQFDMWGVSPDSGRWNWEELREKVKTHGVR 600



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQIETGTPYMLYKDA N+KSNQ+NL  I+
Sbjct: 389 LWFAIMESQIETGTPYMLYKDAANKKSNQKNLGTIK 424



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I       L+K+     S    +     LY  ++ +TG    +I+   +++I 
Sbjct: 74  YAILAARIAISN---LHKNTLKSFSGTMKM-----LYQYIDPKTGQNASLIAKDTWKVIQ 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K+A  L+SAIIYDRDF Y++FG+K
Sbjct: 126 KHAALLDSAIIYDRDFGYDYFGYK 149


>gi|119501198|ref|XP_001267356.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
 gi|119415521|gb|EAW25459.1| ribonucleotide reductase large subunit RNR1, putative [Neosartorya
           fischeri NRRL 181]
          Length = 859

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVES+  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIIDVN+YPV EA+ SNMRHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDVNYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL ASCE+A   GPY+TYEGSPVSQGILQYDMW  TPTDLWDW +LK KIA+H
Sbjct: 533 FETIYHGALTASCELAKEFGPYETYEGSPVSQGILQYDMWDRTPTDLWDWDSLKTKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+T+L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW +LK KIA+HGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDSLKTKIAQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T+L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRTILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVES+  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVESNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYEQYEKEG 378



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+GAL ASCE+A   GPY+TYEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHGALTASCELAKEFGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK     +G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDSLKTKIAQHGVR 595



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEI+MK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYVNPKNKQPAPMISKETYEIVMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|327301679|ref|XP_003235532.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
 gi|326462884|gb|EGD88337.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           rubrum CBS 118892]
          Length = 870

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE EG+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDSCN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 410 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 470 VVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK +I+KH
Sbjct: 530 FETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 590 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 650 SDNMKNRIIADGGSIQNISNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 710 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 755



 Score =  296 bits (758), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK +I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 564 LQYDMWNVTPTDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 624 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNISNIPADIKALYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 684 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 744 APIQFTVDQEQL 755



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 489 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAALTASCELAKVD 548

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK     +G++
Sbjct: 549 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKHGVR 592



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE EG
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEG 375



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 32  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 82

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 83  LHKQTKKQFSSVIDDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 142

Query: 767 FGFK 770
           FGFK
Sbjct: 143 FGFK 146



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 385 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 420


>gi|441498219|ref|ZP_20980419.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Fulvivirga imtechensis AK7]
 gi|441438007|gb|ELR71351.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Fulvivirga imtechensis AK7]
          Length = 781

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/503 (65%), Positives = 408/503 (81%), Gaps = 8/503 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY LWIPD FM+RVE +  WSL C
Sbjct: 281 RKGSFAIYLEPWHADIFDFLDLKKNHGKEELRARDLFYALWIPDLFMKRVEDNDVWSLFC 340

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY KYE EGK+ +QV A+ LWF +L++QIETGTPYMLYKDA N
Sbjct: 341 PNEAPGLADCYGDEFEKLYTKYEREGKYRKQVKAQDLWFEVLEAQIETGTPYMLYKDAAN 400

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEIVEYT+ DEVAVCNLASIAL  ++   D  ++  KL ++ K
Sbjct: 401 KKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVCNLASIALPKFVT-EDGRFDHQKLYEITK 459

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNK+ID+N+YPV+EARNSNMRHRPIGIGVQGLAD F+ +++PFD  E+R LNK I
Sbjct: 460 VVTKNLNKVIDINYYPVKEARNSNMRHRPIGIGVQGLADTFLMLKMPFDSPEARGLNKHI 519

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
            ETIY+ A+ AS EIA  +GPY+TY+GSPVS+GI Q+DMWGVTP +  WDW +LK+++ K
Sbjct: 520 HETIYFAAMTASMEIATVEGPYETYKGSPVSKGIFQFDMWGVTPDSGRWDWESLKKEVRK 579

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL++DL+ LGL
Sbjct: 580 NGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMKDLIALGL 639

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD+MK++LI  NGS+Q+I  IPQ +KDLYKTVWEI QK ++DMAADRGA+I QSQS+N+
Sbjct: 640 WDDSMKNRLIEANGSVQNIPEIPQHIKDLYKTVWEISQKAIIDMAADRGAYICQSQSMNV 699

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++ + N+ K++SMHF+ WK GLKTGMYYLR+K AA+AIQFT+DK+      A + A + E
Sbjct: 700 HIQDPNFGKLTSMHFYAWKKGLKTGMYYLRSKAAASAIQFTVDKSAKQQPAAQQQAVTNE 759

Query: 570 EIQADQEQAMAAMICRRDNKEDC 592
                 EQ  A M+C  DN + C
Sbjct: 760 ------EQNRADMVCSLDNPDAC 776



 Score =  300 bits (768), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 181/229 (79%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  WDW +LK+++ K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 554 FQFDMWGVTPDSGRWDWESLKKEVRKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 613

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL+ LGLWDD+MK++LI  NGS+Q+I  IPQ +KDLYKTVW
Sbjct: 614 YTRRTLSGEFIVVNKHLMKDLIALGLWDDSMKNRLIEANGSVQNIPEIPQHIKDLYKTVW 673

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGA+I QSQS+N+++ + N+ K++SMHF+ WK GLKTGMYYLR+K A
Sbjct: 674 EISQKAIIDMAADRGAYICQSQSMNVHIQDPNFGKLTSMHFYAWKKGLKTGMYYLRSKAA 733

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A+AIQFT+DK+      A +   + E      EQ  A M+C  DN + C
Sbjct: 734 ASAIQFTVDKSAKQQPAAQQQAVTNE------EQNRADMVCSLDNPDAC 776



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY LWIPD FM+RVE +  WSL C
Sbjct: 281 RKGSFAIYLEPWHADIFDFLDLKKNHGKEELRARDLFYALWIPDLFMKRVEDNDVWSLFC 340

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY KYE EG
Sbjct: 341 PNEAPGLADCYGDEFEKLYTKYEREG 366



 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 67/84 (79%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +++PFD  E+R LNK I ETIY+ A+ AS EIA  +GPY+TY+GSPVS
Sbjct: 491 IGVQGLADTFLMLKMPFDSPEARGLNKHIHETIYFAAMTASMEIATVEGPYETYKGSPVS 550

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +GI Q+DMWGVTP +  WDW +LK
Sbjct: 551 KGIFQFDMWGVTPDSGRWDWESLK 574



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF +L++QIETGTPYMLYKDA N+KSNQ+NL  I+
Sbjct: 377 LWFEVLEAQIETGTPYMLYKDAANKKSNQKNLGTIK 412



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA    +L       FA+L ++I       L+K      SN      ++ 
Sbjct: 38  GVTTVELDNLAAETAASLTTKHPD-FALLAARIAISN---LHKVTSKSFSN-----TMKR 88

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  V+ +TG   P+IS + Y +I K+A  L+S+IIYDRDF+Y++FGFK
Sbjct: 89  LYTYVDPKTGENAPLISKEAYGVIKKHAALLDSSIIYDRDFSYDYFGFK 137


>gi|310798516|gb|EFQ33409.1| ribonucleotide reductase [Glomerella graminicola M1.001]
          Length = 894

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/475 (67%), Positives = 395/475 (83%), Gaps = 2/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE  GK  + + A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQMGKGRKTIKAQKLWYAILEAQTETGNPFMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNK+I
Sbjct: 473 VVVRNLNRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARDLNKKI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S ++A  +GPY+TYEGSPVSQGILQYDMW V P+DLWDW ALKE+I +H
Sbjct: 533 FETIYHAALTMSVQLAREEGPYETYEGSPVSQGILQYDMWNVKPSDLWDWDALKEQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP ++K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASK 563
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A++   K
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADSAVGK 767



 Score =  296 bits (758), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/201 (69%), Positives = 167/201 (83%), Gaps = 2/201 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW ALKE+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSDLWDWDALKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP ++K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKT--KMANAMASK 967
             IQFT+D+   K+A++   K
Sbjct: 747 APIQFTVDQEALKVADSAVGK 767



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQMG 378



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNK+IFETIY+ AL  S ++A  +GPY+TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFESPEARDLNKKIFETIYHAALTMSVQLAREEGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P+DLWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVKPSDLWDWDALKEQIKQHGVR 595



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMI+   Y+ +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNNKPSPMIAKDTYDAVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDA NRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDAANRKSNQKNLGTI 423


>gi|340522103|gb|EGR52336.1| large subunit of ribonucleoside-diphosphate reductase [Trichoderma
           reesei QM6a]
          Length = 931

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/476 (67%), Positives = 396/476 (83%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 322 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 381

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EG+  + + A+KLW++IL++Q ETG P+MLYKD CN
Sbjct: 382 PNECPGLADCYGEEFEALYEKYEREGRGRKTIRAQKLWYSILEAQTETGNPFMLYKDHCN 441

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +++  +  Y+F KL +V K
Sbjct: 442 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPAFVDYNEGCYDFKKLHEVTK 501

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +RLPF+  E+R LNKQI
Sbjct: 502 VVVRNLNRIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRLPFESPEARELNKQI 561

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS EIA  +GPY++++GSP S+GILQYDMW V P+DLW+W +LKE+I +H
Sbjct: 562 FETIYHAALEASMEIAKVEGPYESFKGSPASEGILQYDMWDVKPSDLWEWDSLKEQIKEH 621

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 622 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDTGLW 681

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP+ +K LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 682 SDAMKNRIIAENGSIQNIPNIPEDIKALYKTVWEISQRQIVQMAADRGAFIDQSQSLNIH 741

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKD 564
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A+   SKD
Sbjct: 742 MKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAAPIQFTVDQQALKVADTAVSKD 797



 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 137/202 (67%), Positives = 166/202 (82%), Gaps = 2/202 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLW+W +LKE+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 596 LQYDMWDVKPSDLWEWDSLKEQIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 655

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV+ GLW D MK+++I  NGSIQ+I  IP+ +K LYKTVWE
Sbjct: 656 QRRVLAGEFQVVNPWLLKDLVDTGLWSDAMKNRIIAENGSIQNIPNIPEDIKALYKTVWE 715

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 716 ISQRQIVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 775

Query: 949 NAIQFTIDKT--KMANAMASKD 968
             IQFT+D+   K+A+   SKD
Sbjct: 776 APIQFTVDQQALKVADTAVSKD 797



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 322 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 381

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 382 PNECPGLADCYGEEFEALYEKYEREG 407



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E+R LNKQIFETIY+ ALEAS EIA  +GPY++++GSP S
Sbjct: 533 VGVQGLADAFLALRLPFESPEARELNKQIFETIYHAALEASMEIAKVEGPYESFKGSPAS 592

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V P+DLW+W +LK     +G++
Sbjct: 593 EGILQYDMWDVKPSDLWEWDSLKEQIKEHGVR 624



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 14/126 (11%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVL------ALVYGLKLWFAILDSQIETGTPYMLYK 704
           ++Q ++     GVT   L D  +L  L      A +      +AIL ++I          
Sbjct: 61  ITQKVISGVYGGVTTVQLDDLVSLHELVAAETAAYMTVTHPDYAILAARIAVSN------ 114

Query: 705 DACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNY 764
              ++++ +Q   V+ +LY+ VN +    +PMIS   YE +M++ + L+SAI+YDRDFNY
Sbjct: 115 --LHKQTKKQWSAVVSDLYHYVNPKNNRASPMISKDTYECVMRHKEELDSAIVYDRDFNY 172

Query: 765 NFFGFK 770
            +FGFK
Sbjct: 173 QYFGFK 178



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 417 KLWYSILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 452


>gi|392871374|gb|EAS33278.2| ribonucleoside-diphosphate reductase large chain [Coccidioides
           immitis RS]
          Length = 877

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/469 (68%), Positives = 386/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLAS+AL  Y++P    Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID N YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC+IA  DGPY+TYEGSPVSQGILQYDMW VTPTDLWDW +LK  IAKH
Sbjct: 533 FETIYHAALTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTPTDLWDWDSLKRDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGA+IDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ AL ASC+IA  DGPY+TYEGSPV
Sbjct: 503 AVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 563 SQGILQYDMWNVTPTDLWDWDSLKRDIAKHGVR 595



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEG 378



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ +N +     PMIS K YEI+MK++  LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|225560468|gb|EEH08749.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus G186AR]
          Length = 881

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/469 (68%), Positives = 388/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +++W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+  + V A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEGRGKKTVKAQKLWYAILEAQTETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++P    Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A  DGPY TYEGSPVSQGILQYDMW VTPTDLWDW +LK+ IAKH
Sbjct: 533 FETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTPTDLWDWDSLKQDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK+ IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I   GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 72/91 (79%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++ LN QIFETIY+  L ASCE+A  DGPY TYEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWNVTPTDLWDWDSLKQDIAKHGVR 595



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +++W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEQNSEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +A L ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYATLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N +     PMIS   YE +M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTYETVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 423


>gi|402076101|gb|EJT71524.1| ribonucleoside-diphosphate reductase large subunit [Gaeumannomyces
           graminis var. tritici R3-111a-1]
          Length = 920

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE  GK  + + A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYERAGKGRKTLKAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +I+  +  Y+F KL  V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFIDYNEGVYDFQKLHKVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN+YPV+EARNSNMRHRPIG+GVQGLAD F+ +RLPF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNYYPVQEARNSNMRHRPIGLGVQGLADAFLALRLPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A   G Y TYEGSPVSQGILQYDMW V P++LWDW  LK  I +H
Sbjct: 533 FETIYHAGLTASCELAREQGTYSTYEGSPVSQGILQYDMWNVKPSELWDWEGLKADIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLVELGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVELGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+++I   GSIQ+I  IP+  K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDDMKNRIIAEGGSIQNIASIPEDTKRLYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  292 bits (747), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 158/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P++LWDW  LK  I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSELWDWEGLKADIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLVELGLW D+MK+++I   GSIQ+I  IP+  K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVELGLWSDDMKNRIIAEGGSIQNIASIPEDTKRLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGDEFEALYEKYERAG 378



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E+R LNKQIFETIY+  L ASCE+A   G Y TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRLPFESPEARELNKQIFETIYHAGLTASCELAREQGTYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P++LWDW  LK     +G++
Sbjct: 564 QGILQYDMWNVKPSELWDWEGLKADIKQHGVR 595



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +L++ VN + G  +PMI+ + Y+ +M++    +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQFSSVISDLFHYVNPKNGRLSPMIAQETYDCVMRHKAEFDSAIVYDRDFNYQYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|302498356|ref|XP_003011176.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
 gi|291174724|gb|EFE30536.1| hypothetical protein ARB_02698 [Arthroderma benhamiae CBS 112371]
          Length = 870

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE EG+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDSCN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 410 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 470 VVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK +I+KH
Sbjct: 530 FETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 590 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 650 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 710 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 755



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK +I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 564 LQYDMWNVTPTDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 624 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 684 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 744 APIQFTVDQEQL 755



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 489 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAALTASCELAKVD 548

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK     +G++
Sbjct: 549 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKHGVR 592



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE EG
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEG 375



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 32  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 82

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VIE+LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 83  LHKQTKKQFSSVIEDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 142

Query: 767 FGFK 770
           FGFK
Sbjct: 143 FGFK 146



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 385 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 420


>gi|380488165|emb|CCF37565.1| ribonucleoside-diphosphate reductase large subunit [Colletotrichum
           higginsianum]
          Length = 895

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE  GK  + + A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQMGKGRKTMKAQKLWYAILEAQTETGNPFMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDYNEGVYDFQKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNK+I
Sbjct: 473 VVVRNLNRIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARDLNKKI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S ++A  +GPYQTYEGSPVSQGILQYDMW V P+DLWDW +LKE+I +H
Sbjct: 533 FETIYHAALTMSVQLAKEEGPYQTYEGSPVSQGILQYDMWNVKPSDLWDWDSLKEQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP ++K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEAL 758



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW +LKE+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSDLWDWDSLKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP ++K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPTEVKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE  G
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEQMG 378



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNK+IFETIY+ AL  S ++A  +GPYQTYEGSPVS
Sbjct: 504 LGVQGLADAFLALRMPFESPEARDLNKKIFETIYHAALTMSVQLAKEEGPYQTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P+DLWDW +LK     +G++
Sbjct: 564 QGILQYDMWNVKPSDLWDWDSLKEQIKQHGVR 595



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMI+   Y+ +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVVSDLYHYVNPKNGKASPMIAKDTYDAVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDA NRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDAANRKSNQKNLGTI 423


>gi|302657477|ref|XP_003020459.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
 gi|291184296|gb|EFE39841.1| hypothetical protein TRV_05425 [Trichophyton verrucosum HKI 0517]
          Length = 872

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE EG+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDSCN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 410 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 470 VVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK +I+KH
Sbjct: 530 FETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 590 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 650 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 710 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 755



 Score =  295 bits (755), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK +I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 564 LQYDMWNVTPTDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 624 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 684 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 744 APIQFTVDQEQL 755



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 489 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAALTASCELAKVD 548

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK     +G++
Sbjct: 549 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKHGVR 592



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE EG
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKEG 375



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 32  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 82

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VIE+LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 83  LHKQTKKQFSSVIEDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 142

Query: 767 FGFK 770
           FGFK
Sbjct: 143 FGFK 146



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 385 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 420


>gi|358387135|gb|EHK24730.1| hypothetical protein TRIVIDRAFT_61504 [Trichoderma virens Gv29-8]
          Length = 903

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/476 (67%), Positives = 396/476 (83%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EG+  + + A+KLW++IL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEKEGRGRKTIRAQKLWYSILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  Y++  +  Y+F KL +V K
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPAYVDYNEGCYDFKKLHEVTK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS EIA  +GPYQ+++GSP S+GILQ+DMW V P+DLW+W +LKE+I +H
Sbjct: 533 FETIYHAALEASMEIAKVEGPYQSFKGSPASEGILQFDMWDVKPSDLWEWDSLKEQIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDTGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP+ +K LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPEDIKALYKTVWEISQRQIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKD 564
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A+   SKD
Sbjct: 713 MKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADTAVSKD 768



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 166/202 (82%), Gaps = 2/202 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLW+W +LKE+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWDVKPSDLWEWDSLKEQIKEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV+ GLW D MK+++I  NGSIQ+I  IP+ +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDTGLWSDAMKNRIIAENGSIQNIPNIPEDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQIVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKT--KMANAMASKD 968
             IQFT+D+   K+A+   SKD
Sbjct: 747 APIQFTVDQEALKVADTAVSKD 768



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEKEG 378



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ ALEAS EIA  +GPYQ+++GSP S
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALEASMEIAKVEGPYQSFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLW+W +LK     +G++
Sbjct: 564 EGILQFDMWDVKPSDLWEWDSLKEQIKEHGVR 595



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMIS   YE +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSAVVSDLYHYVNPKNSRASPMISKDTYECVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|240280028|gb|EER43532.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H143]
 gi|325088748|gb|EGC42058.1| ribonucleoside-diphosphate reductase subunit large [Ajellomyces
           capsulatus H88]
          Length = 881

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/469 (68%), Positives = 388/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +++W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+  + V A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEGRGKKTVKAQKLWYAILEAQTETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++P    Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A  DGPY TYEGSPVSQGILQYDMW VTPTDLWDW +LK+ IAKH
Sbjct: 533 FETIYHAGLTASCELAKIDGPYSTYEGSPVSQGILQYDMWNVTPTDLWDWDSLKQDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK+ IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKQDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I   GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 72/91 (79%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++ LN QIFETIY+  L ASCE+A  DGPY TYEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKIDGPYSTYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWNVTPTDLWDWDSLKQDIAKHGVR 595



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +++W+L C
Sbjct: 293 RPGAFAIYLEPWHTDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNSEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +A L ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYATLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N +     PMIS   YE +M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNQRPAPMISQTTYETVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 423


>gi|169603614|ref|XP_001795228.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
 gi|111066086|gb|EAT87206.1| hypothetical protein SNOG_04815 [Phaeosphaeria nodorum SN15]
          Length = 903

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 391/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F++LY +YE E K    V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEELYTRYERENKGRETVRAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVE+T+ DEVAVCNLAS+AL  +++     ++F KL +V  
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEFTAPDEVAVCNLASLALPSFVDYKRGEFDFHKLHEVTM 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKII+VN YPVEEAR SN RHRPIG+GVQGLAD F+ +RLPF+  E++ LN QI
Sbjct: 473 VVTRNLNKIIEVNHYPVEEARRSNFRHRPIGLGVQGLADAFLALRLPFESPEAKKLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +SC+IA   GPY TYEGSPVS+G LQYD+WGVTP+DLWDWA+LK+KIA+H
Sbjct: 533 FETIYHAALTSSCDIAKELGPYATYEGSPVSKGQLQYDLWGVTPSDLWDWASLKDKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I + GSIQ I  IP++ K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADGGSIQRIPNIPEETKTLYKTVWEISQRTIIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  303 bits (775), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 144/213 (67%), Positives = 172/213 (80%), Gaps = 5/213 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTP+DLWDWA+LK+KIA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDLWGVTPSDLWDWASLKDKIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW +NMK+++I + GSIQ I  IP++ K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSENMKNRIIADGGSIQRIPNIPEETKTLYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIIQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDK-----TKMANAMASKDTRSQEEIQ 976
             IQFT+D+     T    A A   TR Q   Q
Sbjct: 747 APIQFTVDQEALQVTDTNVARALPKTRKQPGFQ 779



 Score =  142 bits (359), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 72/85 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RV+ + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFGFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVQENGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL+D +G++F++LY +YE E
Sbjct: 353 PNECPGLADVYGDEFEELYTRYERE 377



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+ AL +SC+IA   GPY TYEGSPVS
Sbjct: 504 LGVQGLADAFLALRLPFESPEAKKLNTQIFETIYHAALTSSCDIAKELGPYATYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYD+WGVTP+DLWDWA+LK     +G++
Sbjct: 564 KGQLQYDLWGVTPSDLWDWASLKDKIAQHGVR 595



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT   L D AA +  A +      +AIL ++I             ++++ +Q   V+ +
Sbjct: 50  GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQTKKQFSAVVSD 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN + G   PMISD  Y+II  +A+ LNSAI+YDRDFNY FFGFK
Sbjct: 101 LYTYVNPKNGKSQPMISDYIYKIIQDHAEELNSAIVYDRDFNYQFFGFK 149



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|429853065|gb|ELA28164.1| ribonucleoside-diphosphate reductase large chain [Colletotrichum
           gloeosporioides Nara gc5]
          Length = 898

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EGK  + + A+KLW+AIL++Q ETG P+MLYKD  N
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREGKGRKTMKAQKLWYAILEAQTETGNPFMLYKDHAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  ++N +D  Y+F KL DV +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPSFVNYSDGIYDFQKLHDVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YPV EARNSNMRHRPIG+GVQGLAD F+ +RLPF+  E+R LNK+I
Sbjct: 473 VVVRNLNRIIDVNHYPVPEARNSNMRHRPIGLGVQGLADAFLALRLPFESPEARELNKKI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S ++A  +G Y +YEGSPVSQG+LQYDMWGV P+DLWDW +LKE+I +H
Sbjct: 533 FETIYHAALTMSVQLAKEEGTYSSYEGSPVSQGVLQYDMWGVKPSDLWDWDSLKEQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGS+Q+I  IP ++K LYKTVWEI Q+TV+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSVQNIPNIPAEVKALYKTVWEISQRTVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEAL 758



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 163/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV P+DLWDW +LKE+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWGVKPSDLWDWDSLKEQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGS+Q+I  IP ++K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSVQNIPNIPAEVKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREG 378



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E+R LNK+IFETIY+ AL  S ++A  +G Y +YEGSPVS
Sbjct: 504 LGVQGLADAFLALRLPFESPEARELNKKIFETIYHAALTMSVQLAKEEGTYSSYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQYDMWGV P+DLWDW +LK     +G++
Sbjct: 564 QGVLQYDMWGVKPSDLWDWDSLKEQIKQHGVR 595



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMI+ + Y+ +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNGRLSPMIAKETYDCVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD  NRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDHANRKSNQKNLGTI 423


>gi|413953007|gb|AFW85656.1| hypothetical protein ZEAMMB73_966032 [Zea mays]
          Length = 815

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/523 (62%), Positives = 406/523 (77%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+DSWGE+FD+LYKKYE++GK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADSWGEEFDNLYKKYESQGKAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD------------- 257
           RKSNQQNLGTIK SNLCTEI+E+TS  E AVCNLASIAL  ++   D             
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIALPRFVREKDVPLESHPSKLVGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS E+AA++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASAELAAKEGPYETYEGSPVSKGILQPDMWDV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P++ W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSNRWNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMA-NAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  N     D +  EE   D +  MA M+C  +N+E+C+ 
Sbjct: 773 TTLLKENGNGVSDGKPAEE---DVDAKMAQMVCSLNNREECLA 812



 Score =  296 bits (758), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 175/227 (77%), Gaps = 4/227 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P++ W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWDVVPSNRWNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMA-NAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  N     D +  EE   D +  MA M+C  +N+E+CL
Sbjct: 768 KFTVDTTLLKENGNGVSDGKPAEE---DVDAKMAQMVCSLNNREECL 811



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+DSWGE+FD+LYKKYE++G
Sbjct: 353 PNEAPGLADSWGEEFDNLYKKYESQG 378



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AA++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAELAAKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P++ W+W +L+      G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWDVVPSNRWNWPSLRETISKVGIR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + ++
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQ 677



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y   NK +G   P++++  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYMHFNKRSGLMAPLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|19115403|ref|NP_594491.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe 972h-]
 gi|1350600|sp|P36602.2|RIR1_SCHPO RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|1067207|emb|CAA91952.1| ribonucleoside reductase large subunit Cdc22 [Schizosaccharomyces
           pombe]
          Length = 811

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/480 (67%), Positives = 394/480 (82%), Gaps = 6/480 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR++FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F  LY+KYE E +  R +PA+K+W+AIL SQ+ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+GTI+CSNLCTEIVEY+S DEVAVCNLAS+AL  +I   D  YNF KL DV K
Sbjct: 413 RKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIK--DGKYNFQKLHDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YPV EAR SNMRHRP+G+GVQGLAD F  +RLPF+   ++ LN QI
Sbjct: 471 VVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIA  +G Y++YEGSP SQGILQYDMW V PTDLWDWA LKEKIAKH
Sbjct: 531 FETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDWAELKEKIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN  LL+DLVE  LW
Sbjct: 591 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK++L++ +GSIQ I  IPQ LKDLYKTVWEI QKTV+D AADRG FIDQSQSLNI+
Sbjct: 651 NEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + + +Y K++SMHF+GWK GLKTGMYYLRT  A+ AI+FT+D      A+ +++  S EE
Sbjct: 711 LKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV----ALRARNEESNEE 766



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 170/206 (82%), Gaps = 4/206 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDWA LKEKIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 565 LQYDMWNVNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN  LL+DLVE  LW+++MK++L++ +GSIQ I  IPQ LKDLYKTVWE
Sbjct: 625 QRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+D AADRG FIDQSQSLNI++ + +Y K++SMHF+GWK GLKTGMYYLRT  A+
Sbjct: 685 ISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAAS 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEE 974
            AI+FT+D      A+ +++  S EE
Sbjct: 745 AAIKFTVDPV----ALRARNEESNEE 766



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR++FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D WG++F  LY+KYE E
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKE 377



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F  +RLPF+   ++ LN QIFETIY+ ALEASCEIA  +G Y++YEGSP S
Sbjct: 502 LGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPAS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDWA LK     +G++
Sbjct: 562 QGILQYDMWNVNPTDLWDWAELKEKIAKHGIR 593



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++L++ VN +T    PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFK
Sbjct: 97  VVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           K+W+AIL SQ+ETG P+MLYKD+CNRKSNQ+N+  I
Sbjct: 388 KVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423


>gi|119188101|ref|XP_001244657.1| hypothetical protein CIMG_04098 [Coccidioides immitis RS]
          Length = 893

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/469 (68%), Positives = 386/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 309 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 369 PNEAPGLADVYGDEFEALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 428

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLAS+AL  Y++P    Y+F KL +V +
Sbjct: 429 RKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQ 488

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID N YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 489 VLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQI 548

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC+IA  DGPY+TYEGSPVSQGILQYDMW VTPTDLWDW +LK  IAKH
Sbjct: 549 FETIYHAALTASCDIAKVDGPYETYEGSPVSQGILQYDMWNVTPTDLWDWDSLKRDIAKH 608

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 609 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 668

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGA+IDQSQSLNI+
Sbjct: 669 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLNIH 728

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 729 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 777



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 583 LQYDMWNVTPTDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 642

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 643 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 702

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGA+IDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 703 ISQRTIVQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 762

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 763 APIQFTVDQEQLKVA 777



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ AL ASC+IA  DGPY+TYEGSPV
Sbjct: 519 AVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPV 578

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 579 SQGILQYDMWNVTPTDLWDWDSLKRDIAKHGVR 611



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 309 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 369 PNEAPGLADVYGDEFEALYEQYEKEG 394



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 51  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 101

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ +N +     PMIS K YEI+MK++  LNSAI+YDRDFNY +
Sbjct: 102 LHKQTKKQFSSVIDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNYQY 161

Query: 767 FGFK 770
           FGFK
Sbjct: 162 FGFK 165



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 404 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 439


>gi|326469969|gb|EGD93978.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326484125|gb|EGE08135.1| ribonucleoside-diphosphate reductase large subunit [Trichophyton
           equinum CBS 127.97]
          Length = 875

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE EG+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGEEFEALYEKYEKEGRGRTTIKAQKLWYAILEAQTETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 473 VVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK +I+KH
Sbjct: 533 FETLYHAALTASCELAKVDGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK +I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDGLKAEISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 492 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNTQIFETLYHAALTASCELAKVD 551

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW  LK     +G++
Sbjct: 552 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDGLKAEISKHGVR 595



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGEEFEALYEKYEKEG 378



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 423


>gi|223999029|ref|XP_002289187.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
 gi|220974395|gb|EED92724.1| ribonucleotide reductase large chain subunit [Thalassiosira
           pseudonana CCMP1335]
          Length = 813

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/496 (64%), Positives = 400/496 (80%), Gaps = 6/496 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A Y+EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL   WGE+F  LY+KYE EGK  + + A++LWFA+LDSQ+ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDTCWGEEFKTLYEKYEREGKGRKTIKAQQLWFAVLDSQVETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK-----TYNFTKL 265
           RKSNQQNLGTIKCSNLCTEIVEYT+ DE+AVCNLASI+L+ ++ PAD       ++   L
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTAPDEIAVCNLASISLSKFVTPADNFGGEGHFDLENL 472

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K ++K+VTKNLN++ID NFYPVEEAR SNMRHRPIGIGVQGLAD F+ M+LPF+  E+R 
Sbjct: 473 KHISKVVTKNLNRVIDRNFYPVEEARRSNMRHRPIGIGVQGLADAFMMMKLPFESPEARQ 532

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LNK IFETIY+GA EAS E+A ++GPY+TYEGSP S+G LQ+DMWGV P++LWDWA LK 
Sbjct: 533 LNKDIFETIYFGACEASMELAEQEGPYETYEGSPASKGQLQFDMWGVEPSNLWDWAGLKA 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           KIA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF +VN HLLR+L 
Sbjct: 593 KIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTIVNKHLLRELT 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
             GLW + +++Q+I   GS+Q +  IP+ ++D+YKTVWEIPQ+ +LDMAADRGAFI QSQ
Sbjct: 653 ANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTVWEIPQRAILDMAADRGAFICQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           S+N+++ E + +K++SMHF+ WK GLKTGMYYLRT+P A+AIQFT+++  +A +  SK A
Sbjct: 713 SMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTRPKADAIQFTVNQEMLAES-TSKPA 771

Query: 566 RSQEEIQADQEQAMAA 581
           + Q E         AA
Sbjct: 772 QDQLERNPSPTSVTAA 787



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/239 (55%), Positives = 180/239 (75%), Gaps = 11/239 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGV P++LWDWA LK KIA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y
Sbjct: 572 LQFDMWGVEPSNLWDWAGLKAKIAQHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF +VN HLLR+L   GLW + +++Q+I   GS+Q +  IP+ ++D+YKTVWE
Sbjct: 632 NRRVLAGEFTIVNKHLLRELTANGLWTERVRNQIIAQGGSVQAVADIPKSIRDVYKTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LDMAADRGAFI QSQS+N+++ E + +K++SMHF+ WK GLKTGMYYLRT+P A
Sbjct: 692 IPQRAILDMAADRGAFICQSQSMNVHIGEPSTSKLTSMHFYAWKKGLKTGMYYLRTRPKA 751

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMA----------AMICRRDNKEDCL 997
           +AIQFT+++  +A +  SK  + Q E         A          A +  +D +E+CL
Sbjct: 752 DAIQFTVNQEMLAES-TSKPAQDQLERNPSPTSVTAAGKVSVNSKFAGLQMKDEEEECL 809



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 95/140 (67%), Gaps = 5/140 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M+LPF+  E+R LNK IFETIY+GA EAS E+A ++GPY+TYEGSP S
Sbjct: 509 IGVQGLADAFMMMKLPFESPEARQLNKDIFETIYFGACEASMELAEQEGPYETYEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK-- 710
           +G LQ+DMWGV P++LWDWA LK     +G++   ++L + + T +   +  +  + +  
Sbjct: 569 KGQLQFDMWGVEPSNLWDWAGLKAKIAQHGMR--NSLLMAPMPTASTAQILGNNESTEPF 626

Query: 711 -SNQQNLEVIEELYNMVNKE 729
            SN  N  V+   + +VNK 
Sbjct: 627 TSNMYNRRVLAGEFTIVNKH 646



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A Y+EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMQRVEQNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL   WGE+F  LY+KYE EG
Sbjct: 353 PNECPGLDTCWGEEFKTLYEKYEREG 378



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFA+LDSQ+ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 388 QLWFAVLDSQVETGTPYMLYKDSCNRKSNQQNLGTIK 424



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++Q    GVT T+L D  A +  A        +A+L ++IE            +++
Sbjct: 39  ISQKVIQGVYPGVTTTEL-DELAAQTAASFSTQHPDYAVLAARIEVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E  YN  + +TG   P++S + Y+++  N D L+ A+I+DRDF +++FG+K
Sbjct: 90  TEKQFSKVVEAFYNYTHPKTGEPAPLVSKEVYDVVNANKDVLDGAVIHDRDFEFDYFGYK 149


>gi|449301212|gb|EMC97223.1| hypothetical protein BAUCODRAFT_138578 [Baudoinia compniacensis
           UAMH 10762]
          Length = 920

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RVES+  W+LMC
Sbjct: 294 RPGAFAIYLEPWHADVFSFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVESNGNWTLMC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YE EG+    + A+KLW+AIL++Q ETG P+M YKDA N
Sbjct: 354 PNECPGLADVYGDEFEALYEQYEREGRGRETIRAQKLWYAILEAQTETGNPFMCYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  Y++  ++ Y+F KL +V K
Sbjct: 414 RKSNQKNLGTIRSSNLCTEIMEYCAPDEVAVCNLASLALPTYVDIQNEVYDFQKLHEVVK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNKII++N+YPV EAR SN RHRPIG+GV GLAD F+ +R+PFD +E++LLN QI
Sbjct: 474 VVTKNLNKIINLNYYPVPEARKSNFRHRPIGLGVSGLADAFLALRMPFDSDEAKLLNIQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE+SCEIAA  GPY+TYEGSPVS+G LQYDMW   PTDLWDW +LK KIA+H
Sbjct: 534 FETIYHAALESSCEIAAELGPYETYEGSPVSKGELQYDMWNKEPTDLWDWTSLKAKIAQH 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QI+G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 594 GVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDRGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP +LK LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 654 SDNMKNRIIADGGSIQNIPNIPDELKALYKTVWEISQRHIVQMAADRGAFIDQSQSLNIH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ K+
Sbjct: 714 MKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEKL 759



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PTDLWDW +LK KIA+HGVRNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 568 LQYDMWNKEPTDLWDWTSLKAKIAQHGVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+ GLW DNMK+++I + GSIQ+I  IP +LK LYKTVWE
Sbjct: 628 SRRVLAGEFQVVNPWLLKDLVDRGLWSDNMKNRIIADGGSIQNIPNIPDELKALYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 688 ISQRHIVQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 747

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ K+
Sbjct: 748 APIQFTVDQEKL 759



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RVES+  W+LMC
Sbjct: 294 RPGAFAIYLEPWHADVFSFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVESNGNWTLMC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY++YE EG
Sbjct: 354 PNECPGLADVYGDEFEALYEQYEREG 379



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PFD +E++LLN QIFETIY+ ALE+SCEIAA  GPY+TYEGSPVS
Sbjct: 505 LGVSGLADAFLALRMPFDSDEAKLLNIQIFETIYHAALESSCEIAAELGPYETYEGSPVS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMW   PTDLWDW +LK     +G++
Sbjct: 565 KGELQYDMWNKEPTDLWDWTSLKAKIAQHGVR 596



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 44  VISGVYQ----GVTTVQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 90

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +    VI +LY+ VN ++    PMIS++ Y  +MK+AD LNSAI+YDRDFNY +FGFK
Sbjct: 91  TKKLWSSVISDLYHYVNPKSKKPAPMISEETYNTVMKHADELNSAIVYDRDFNYQYFGFK 150



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+M YKDA NRKSNQ+NL  I
Sbjct: 389 KLWYAILEAQTETGNPFMCYKDAANRKSNQKNLGTI 424


>gi|322696603|gb|EFY88393.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           acridum CQMa 102]
          Length = 905

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/476 (67%), Positives = 396/476 (83%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EGK  R V A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREGKGRRTVRAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGRYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN+YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNYYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS E+A   GPY T++GSP S+GILQ+DMW VTP+DLW+W  LK++I +H
Sbjct: 533 FETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTPSDLWEWDTLKQQIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM--ANAMASKD 564
           M + +  K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +  A+A   KD
Sbjct: 713 MKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALMVADANVGKD 768



 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 166/202 (82%), Gaps = 2/202 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW VTP+DLW+W  LK++I +HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWNVTPSDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M + +  K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM--ANAMASKD 968
             IQFT+D+  +  A+A   KD
Sbjct: 747 APIQFTVDQEALMVADANVGKD 768



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREG 378



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL AS E+A   GPY T++GSP S
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW VTP+DLW+W  LK     +G++
Sbjct: 564 EGILQFDMWNVTPSDLWEWDTLKQQIKEHGIR 595



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMIS   YE +M++ D L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNERASPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW++IL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 384 VRAQKLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|303316562|ref|XP_003068283.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
 gi|240107964|gb|EER26138.1| Ribonucleoside-diphosphate reductase large chain, putative
           [Coccidioides posadasii C735 delta SOWgp]
          Length = 877

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/469 (68%), Positives = 385/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLAS+AL  Y++P    Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID N YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC+IA  DGPY+TYEGSPVSQG+LQYDMW VTPTDLWDW +LK  IAKH
Sbjct: 533 FETIYHAALTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTPTDLWDWDSLKRDIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ I  IP  +K LYKTVWEI Q+T++ MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 161/195 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQSIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGA+IDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ AL ASC+IA  DGPY+TYEGSPV
Sbjct: 503 AVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQYDMW VTPTDLWDW +LK     +G++
Sbjct: 563 SQGVLQYDMWNVTPTDLWDWDSLKRDIAKHGVR 595



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEG 378



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ +N +     PMIS K YEI+MK++  LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|452842681|gb|EME44617.1| hypothetical protein DOTSEDRAFT_152571 [Dothistroma septosporum
           NZE10]
          Length = 916

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/463 (68%), Positives = 388/463 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVMQFMDLRKNHGKEEVRARDLFYALWIPDLFMQRVEQNGTWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLSD +G++F +LY++YE EGK    V A+K+W+AIL++Q ETGTP++LYKDA N
Sbjct: 353 PNECPGLSDVYGDEFKELYERYEREGKGRETVRAQKIWYAILEAQTETGTPFILYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLAS+AL  Y++  ++ ++F KL +V K
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIMEYSAPDEVAVCNLASLALPTYVDIENEVFDFKKLHEVTK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK I++N+YPV EAR SN RHRPIG+GV GLAD F+ +R+PFD  E++ LN QI
Sbjct: 473 VVTRNLNKTIEINYYPVPEARKSNFRHRPIGLGVNGLADAFLALRMPFDSPEAKELNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A + GPY+TY GSPVSQG LQYDMWG TPTDLWDWAALK KIA+H
Sbjct: 533 FETIYHAALEASCELAEKLGPYETYPGSPVSQGELQYDMWGKTPTDLWDWAALKGKIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QI+G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDRGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I +NGSIQ I  IP  LK LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADNGSIQRIPNIPDDLKALYKTVWEISQRNIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           M E    K++SMHF GWKLGLKTGMYYLRT+ A+  IQFT+D+
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTQAASAPIQFTVDQ 755



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG TPTDLWDWAALK KIA+HGVRNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 567 LQYDMWGKTPTDLWDWAALKGKIAQHGVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+ GLW +NMK+++I +NGSIQ I  IP  LK LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDRGLWSENMKNRIIADNGSIQRIPNIPDDLKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ A+
Sbjct: 687 ISQRNIVQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTQAAS 746

Query: 949 NAIQFTIDK 957
             IQFT+D+
Sbjct: 747 APIQFTVDQ 755



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVMQFMDLRKNHGKEEVRARDLFYALWIPDLFMQRVEQNGTWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +G++F +LY++YE EG
Sbjct: 353 PNECPGLSDVYGDEFKELYERYEREG 378



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PFD  E++ LN QIFETIY+ ALEASCE+A + GPY+TY GSPVS
Sbjct: 504 LGVNGLADAFLALRMPFDSPEAKELNIQIFETIYHAALEASCELAEKLGPYETYPGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYDMWG TPTDLWDWAALK     +G++
Sbjct: 564 QGELQYDMWGKTPTDLWDWAALKGKIAQHGVR 595



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT   L D AA +  A +      +AIL ++I             ++++ +Q   V+++
Sbjct: 50  GVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQTKKQFSAVVQD 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +TG + PMIS++ Y  +MK++D LNSAI+YDRDFNY +FGFK
Sbjct: 101 LYAYINPKTGKKAPMISEETYATVMKHSDELNSAIVYDRDFNYQYFGFK 149



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   K+W+AIL++Q ETGTP++LYKDA NRKSNQ+NL  I+
Sbjct: 384 VRAQKIWYAILEAQTETGTPFILYKDAANRKSNQKNLGTIK 424


>gi|392565961|gb|EIW59137.1| hypothetical protein TRAVEDRAFT_28460 [Trametes versicolor
           FP-101664 SS1]
          Length = 888

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/469 (68%), Positives = 392/469 (83%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+F++L+KN GKEE RARDLFY LWIPD FM+RVES  +WSL C
Sbjct: 297 RPGAFAIYLEPWHADVFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESGGKWSLFC 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WGE+F+ LY++YE EG+  + + A+KLW+AIL++QIETG P+MLYKDACN
Sbjct: 357 PSEAPGLHEVWGEEFERLYEQYEREGRAKKTIEAQKLWYAILEAQIETGGPFMLYKDACN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEIVEY+S DE AVCNLASIAL  +I   +  YNF KL DV K
Sbjct: 417 AKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIALPSFIE--NGKYNFQKLHDVTK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN YP+ EA+ SNMRHRPIG+GVQGLAD F+ +R+PFD  E+R LN+QI
Sbjct: 475 VVAFNLNRIIDVNHYPIPEAQRSNMRHRPIGVGVQGLADAFMALRMPFDGVEARKLNQQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+EASCE+A + G Y+TY+GSP S+G LQYD+WG+TPTDLWDW +LK K+A+H
Sbjct: 535 FETIYHAAVEASCEMAQQFGTYETYQGSPASEGKLQYDLWGITPTDLWDWTSLKAKVAQH 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LVELGLW
Sbjct: 595 GLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVELGLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+ +I NNGSIQ I+ IP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 655 NDDMKNMIIANNGSIQTIDIIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AI+FT+D + + NA
Sbjct: 715 LQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIKFTVDSSFLKNA 763



 Score =  300 bits (767), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 167/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WG+TPTDLWDW +LK K+A+HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQYDLWGITPTDLWDWTSLKAKVAQHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LVELGLW+D+MK+ +I NNGSIQ I+ IP  +K +YKTVWE
Sbjct: 629 TRRVLAGEFQVVCPWLLRELVELGLWNDDMKNMIIANNGSIQTIDIIPDDVKAIYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 689 ISQKKVLDLAADRGAFICQSQSLNVHLQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AI+FT+D + + NA
Sbjct: 749 QAIKFTVDSSFLKNA 763



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+F++L+KN GKEE RARDLFY LWIPD FM+RVES  +WSL C
Sbjct: 297 RPGAFAIYLEPWHADVFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESGGKWSLFC 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WGE+F+ LY++YE EG
Sbjct: 357 PSEAPGLHEVWGEEFERLYEQYEREG 382



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN+QIFETIY+ A+EASCE+A + G Y+TY+GSP S
Sbjct: 506 VGVQGLADAFMALRMPFDGVEARKLNQQIFETIYHAAVEASCEMAQQFGTYETYQGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYD+WG+TPTDLWDW +LK     +GL+
Sbjct: 566 EGKLQYDLWGITPTDLWDWTSLKAKVAQHGLR 597



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 43  ITQKVIAGVYPGVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAVSN--------LHKE 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +    VI +LYN VN + G    MIS + YEI+ KNA+ L+SAIIYDRDF+YNFFGFK
Sbjct: 94  TKKSFSAVISDLYNYVNPKNGRAAGMISKEIYEIVQKNAEVLDSAIIYDRDFSYNFFGFK 153



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+MLYKDACN KSNQQNL  I+
Sbjct: 392 KLWYAILEAQIETGGPFMLYKDACNAKSNQQNLGTIK 428


>gi|358399605|gb|EHK48942.1| hypothetical protein TRIATDRAFT_297700 [Trichoderma atroviride IMI
           206040]
          Length = 733

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/476 (67%), Positives = 398/476 (83%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 124 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 183

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EGK  + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 184 PNECPGLADCYGEEFEALYEKYEKEGKGRKTIRAQKLWYSILEAQTETGNPFMLYKDACN 243

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++  +  Y+F KL DV K
Sbjct: 244 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYNEGCYDFKKLHDVTK 303

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN+YPV+EARNSN RHRPIG+GVQGLAD F+ +RLPF+  E+R LNKQI
Sbjct: 304 VVVRNLNRIIDVNYYPVQEARNSNSRHRPIGVGVQGLADAFLALRLPFESPEARELNKQI 363

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS EIA  +GPY++++GSP S+GILQ+D+W V PTDLW+W +LKE+I +H
Sbjct: 364 FETIYHAALEASMEIAKIEGPYESFKGSPASEGILQFDLWDVKPTDLWEWDSLKEQIKEH 423

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 424 GIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDTGLW 483

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+ ++ M+ADRGAFIDQSQSLNI+
Sbjct: 484 SDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRHIVQMSADRGAFIDQSQSLNIH 543

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKD 564
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A+A  SKD
Sbjct: 544 MKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADANVSKD 599



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 135/202 (66%), Positives = 166/202 (82%), Gaps = 2/202 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W V PTDLW+W +LKE+I +HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 398 LQFDLWDVKPTDLWEWDSLKEQIKEHGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 457

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV+ GLW D MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 458 QRRVLAGEFQVVNPWLLKDLVDTGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWE 517

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ M+ADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 518 ISQRHIVQMSADRGAFIDQSQSLNIHMKDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 577

Query: 949 NAIQFTIDKT--KMANAMASKD 968
             IQFT+D+   K+A+A  SKD
Sbjct: 578 APIQFTVDQEALKVADANVSKD 599



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 124 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNLDWTLMC 183

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 184 PNECPGLADCYGEEFEALYEKYEKEG 209



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E+R LNKQIFETIY+ ALEAS EIA  +GPY++++GSP S
Sbjct: 335 VGVQGLADAFLALRLPFESPEARELNKQIFETIYHAALEASMEIAKIEGPYESFKGSPAS 394

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+D+W V PTDLW+W +LK     +G++
Sbjct: 395 EGILQFDLWDVKPTDLWEWDSLKEQIKEHGIR 426



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 219 KLWYSILEAQTETGNPFMLYKDACNRKSNQKNLGTI 254


>gi|322704073|gb|EFY95672.1| ribonucleoside-diphosphate reductase large chain [Metarhizium
           anisopliae ARSEF 23]
          Length = 905

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/476 (67%), Positives = 396/476 (83%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EGK  R + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREGKGRRTIRAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPAFVDYDEGRYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNHYPVQEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS E+A   GPY T++GSP S+GILQ+DMW VTP+DLW+W  LK++I +H
Sbjct: 533 FETIYHAALTASMELAKEQGPYSTFKGSPASEGILQFDMWNVTPSDLWEWDTLKQQIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKD 564
           M + +  K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A+A   KD
Sbjct: 713 MKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVADANVGKD 768



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/202 (67%), Positives = 167/202 (82%), Gaps = 2/202 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW VTP+DLW+W  LK++I +HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWNVTPSDLWEWDTLKQQIKEHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M + +  K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPSMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKT--KMANAMASKD 968
             IQFT+D+   K+A+A   KD
Sbjct: 747 APIQFTVDQEALKVADANVGKD 768



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEREG 378



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL AS E+A   GPY T++GSP S
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASMELAKEQGPYSTFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW VTP+DLW+W  LK     +G++
Sbjct: 564 EGILQFDMWNVTPSDLWEWDTLKQQIKEHGIR 595



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMIS   YE +M++ D L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNERASPMISKDTYECVMRHKDELDSAIVYDRDFNYQYFGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|440804772|gb|ELR25641.1| ribonucleosidediphosphate reductase, alpha subunit [Acanthamoeba
           castellanii str. Neff]
          Length = 825

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/482 (66%), Positives = 396/482 (82%), Gaps = 2/482 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFDFL+LKKN GKEE RARDLFYGLWIPD FM+RVE+   WSL C
Sbjct: 295 RKGAFAIYLEPWHADIFDFLDLKKNHGKEENRARDLFYGLWIPDLFMKRVETGGDWSLFC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL DSWG++F++ Y++YE EG+  R V A++LWFAIL+SQIETGTPYMLYKDACN
Sbjct: 355 PNEAPGLFDSWGKEFEEKYERYEQEGRARRVVKAQELWFAILESQIETGTPYMLYKDACN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQ+LGTI+ SNLCTE+V+YTS DEVAVCNLAS+AL  +I   +  ++  KL DV K
Sbjct: 415 GKSNQQHLGTIQSSNLCTEVVQYTSPDEVAVCNLASLALPKFITNGE--FDHKKLHDVVK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNK+ID+N+YPV EARNSNMRHRPIGIGVQGLAD+F+ MR P++ +E+R LN+ I
Sbjct: 473 VVTKNLNKVIDINYYPVPEARNSNMRHRPIGIGVQGLADVFMIMRHPWESDEARELNRAI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY AL AS E+A  +G YQTYEGSP S+G LQ D+WGV P+D WDWA L+  IA+H
Sbjct: 533 FETIYYAALVASNELAQVEGTYQTYEGSPASKGKLQPDLWGVVPSDRWDWATLRANIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYT+NIY+RR+L+G+F VVN HLLR+L + GLW
Sbjct: 593 GLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRILAGDFTVVNEHLLRELQQRGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K++L+ +NGS+Q IE IP  +K LYKTVWE+PQ+ ++DMAADR A+IDQSQSLN+Y
Sbjct: 653 SPALKNKLVSHNGSVQRIEEIPDDIKKLYKTVWELPQRVIIDMAADRSAYIDQSQSLNVY 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           M E ++AK++SMHF+ W+ GLKTGMYYLRT+PAANAIQFT+D+   A   A   A +   
Sbjct: 713 MGEPSFAKLTSMHFYAWRKGLKTGMYYLRTRPAANAIQFTVDQEAAATVPAPNKAAAPSP 772

Query: 571 IQ 572
           ++
Sbjct: 773 VK 774



 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 163/194 (84%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WGV P+D WDWA L+  IA+HG+RNSLL+APMPTAST+QILGNNE FEPYT+NIY+RR
Sbjct: 570 DLWGVVPSDRWDWATLRANIAQHGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRR 629

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           +L+G+F VVN HLLR+L + GLW   +K++L+ +NGS+Q IE IP  +K LYKTVWE+PQ
Sbjct: 630 ILAGDFTVVNEHLLRELQQRGLWSPALKNKLVSHNGSVQRIEEIPDDIKKLYKTVWELPQ 689

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAADR A+IDQSQSLN+YM E ++AK++SMHF+ W+ GLKTGMYYLRT+PAANAI
Sbjct: 690 RVIIDMAADRSAYIDQSQSLNVYMGEPSFAKLTSMHFYAWRKGLKTGMYYLRTRPAANAI 749

Query: 952 QFTIDKTKMANAMA 965
           QFT+D+   A   A
Sbjct: 750 QFTVDQEAAATVPA 763



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFDFL+LKKN GKEE RARDLFYGLWIPD FM+RVE+   WSL C
Sbjct: 295 RKGAFAIYLEPWHADIFDFLDLKKNHGKEENRARDLFYGLWIPDLFMKRVETGGDWSLFC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL DSWG++F++ Y++YE EG
Sbjct: 355 PNEAPGLFDSWGKEFEEKYERYEQEG 380



 Score =  119 bits (298), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F+ MR P++ +E+R LN+ IFETIYY AL AS E+A  +G YQTYEGSP S
Sbjct: 504 IGVQGLADVFMIMRHPWESDEARELNRAIFETIYYAALVASNELAQVEGTYQTYEGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ D+WGV P+D WDWA L+     +GL+
Sbjct: 564 KGKLQPDLWGVVPSDRWDWATLRANIAQHGLR 595



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LWFAIL+SQIETGTPYMLYKDACN KSNQQ+L  I+
Sbjct: 385 VVKAQELWFAILESQIETGTPYMLYKDACNGKSNQQHLGTIQ 426



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++Q    GV    L D  A +  A +  L   + +L ++I       L KD     
Sbjct: 41  VTQKVVQGVYNGVHTAQL-DHLAAETAAYMGSLNPGYNVLAARIAISN---LQKD----- 91

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++  LE    L+  VN +TG  + +I+D  +E+I  N + L +AI Y+RDFNY +FGFK
Sbjct: 92  TSESLLETARTLHTYVNSKTGLNSALIADDVFEVIANNTEALEAAIKYERDFNYTYFGFK 151


>gi|225683656|gb|EEH21940.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb03]
          Length = 797

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/507 (63%), Positives = 400/507 (78%), Gaps = 2/507 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEGRGKKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A  DGPY +YEGSPVSQGILQYDMWGVTPTDLWDW +LK++IAKH
Sbjct: 533 FETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTPTDLWDWDSLKQEIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++   +A  +      
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL--KVADTNVARVNG 770

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQG 597
               +    A+     +N E C+   G
Sbjct: 771 AMKKRAAVSASYTSSIENPESCLMCSG 797



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/231 (64%), Positives = 181/231 (78%), Gaps = 6/231 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW +LK++IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAM--AAMICRRDNKEDCL 997
             IQFT+D+ ++  A    DT       A +++A   A+     +N E CL
Sbjct: 747 APIQFTVDQEQLKVA----DTNVARVNGAMKKRAAVSASYTSSIENPESCL 793



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 73/91 (80%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++ LN QIFETIY+  L ASCE+A  DGPY +YEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMWGVTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWGVTPTDLWDWDSLKQEIAKHGVR 595



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N + G   PMIS   YEI+M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNGRPAPMISQSTYEIVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|428184327|gb|EKX53182.1| hypothetical protein GUITHDRAFT_100891 [Guillardia theta CCMP2712]
          Length = 806

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/513 (62%), Positives = 407/513 (79%), Gaps = 13/513 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KNTG EE R RDLF  LWIPD FM RVE +  W L C
Sbjct: 293 RPGAFAIYLEPWHPDVFEFLDLRKNTGTEENRCRDLFLALWIPDLFMERVEKNEDWCLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GLSD+WGE+F+ LY KYE E K  + V A++LWFAIL++Q ETGTPY+L+KD CN
Sbjct: 353 PCECPGLSDTWGEEFESLYLKYEKENKARKTVRAQELWFAILEAQTETGTPYILFKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS DEVAVCNLASI L M+I   D  +N  KL +V +
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSPDEVAVCNLASIGLPMFIQ--DGQFNHQKLMEVTQ 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIIDVN+YPVEEAR SNMRHRPIGIGVQGLAD+F ++R+PFD   ++ LN+ I
Sbjct: 471 VITRNLNKIIDVNYYPVEEARLSNMRHRPIGIGVQGLADVFQKLRMPFDSESAKALNRDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIYYGA+ AS E+A + GPY+TY+GSP S+GILQYDMWGV P+  W+WA +KE +AKH
Sbjct: 531 METIYYGAVTASIELAEKFGPYETYQGSPASKGILQYDMWGVEPSSRWNWAEVKENLAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRV+SGEF VVN HLL++L ELGLW
Sbjct: 591 GMRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVMSGEFAVVNPHLLKELTELGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           + +MK++++   GS+Q I  IP+ ++++YKTVWE+  ++++DMAADRGAFIDQSQSLN++
Sbjct: 651 NKDMKNRILAAQGSVQGISEIPEDVREIYKTVWELKMRSLIDMAADRGAFIDQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM----------ANAM 560
           +A  N +K++SMHF+ WK GLKTG YYLRT+PAA+AIQFT+DK+ +          +N M
Sbjct: 711 IAAPNPSKLTSMHFYSWKKGLKTGCYYLRTRPAADAIQFTVDKSALQTSNKENVMPSNTM 770

Query: 561 ASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
                   ++I+  Q  A A + C   NK++C+
Sbjct: 771 GQLMKNVDDDIRQTQ-LAAAKLACSLKNKDECL 802



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 183/239 (76%), Gaps = 11/239 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV P+  W+WA +KE +AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 LQYDMWGVEPSSRWNWAEVKENLAKHGMRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRV+SGEF VVN HLL++L ELGLW+ +MK++++   GS+Q I  IP+ ++++YKTVWE
Sbjct: 625 TRRVMSGEFAVVNPHLLKELTELGLWNKDMKNRILAAQGSVQGISEIPEDVREIYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  ++++DMAADRGAFIDQSQSLN+++A  N +K++SMHF+ WK GLKTG YYLRT+PAA
Sbjct: 685 LKMRSLIDMAADRGAFIDQSQSLNLFIAAPNPSKLTSMHFYSWKKGLKTGCYYLRTRPAA 744

Query: 949 NAIQFTIDKTKM----------ANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AIQFT+DK+ +          +N M        ++I+  Q  A A + C   NK++CL
Sbjct: 745 DAIQFTVDKSALQTSNKENVMPSNTMGQLMKNVDDDIRQTQ-LAAAKLACSLKNKDECL 802



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KNTG EE R RDLF  LWIPD FM RVE +  W L C
Sbjct: 293 RPGAFAIYLEPWHPDVFEFLDLRKNTGTEENRCRDLFLALWIPDLFMERVEKNEDWCLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P  C GLSD+WGE+F+ LY KYE E
Sbjct: 353 PCECPGLSDTWGEEFESLYLKYEKE 377



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F ++R+PFD   ++ LN+ I ETIYYGA+ AS E+A + GPY+TY+GSP S
Sbjct: 502 IGVQGLADVFQKLRMPFDSESAKALNRDIMETIYYGAVTASIELAEKFGPYETYQGSPAS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWGV P+  W+WA +K     +G++
Sbjct: 562 KGILQYDMWGVEPSSRWNWAEVKENLAKHGMR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ + Y  V+  +G ++ +I+D  YEIIM N D+L+SAIIYDRD+NY++FGFK
Sbjct: 96  EVMTDCYTYVDPSSGRKSQLIADDVYEIIMANKDQLDSAIIYDRDYNYDYFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K    V   +LWFAIL++Q ETGTPY+L+KD CNRKSNQQNL  I+
Sbjct: 379 KARKTVRAQELWFAILEAQTETGTPYILFKDHCNRKSNQQNLGTIK 424


>gi|226293011|gb|EEH48431.1| ribonucleoside-diphosphate reductase large chain [Paracoccidioides
           brasiliensis Pb18]
          Length = 881

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/469 (68%), Positives = 389/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEGRGKKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNRIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L ASCE+A  DGPY +YEGSPVSQGILQYDMWGVTPTDLWDW +LK++IAKH
Sbjct: 533 FETIYHACLTASCELAKVDGPYSSYEGSPVSQGILQYDMWGVTPTDLWDWDSLKQEIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  302 bits (774), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 139/195 (71%), Positives = 167/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW +LK++IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWDSLKQEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV+LGLW DNMK+++I + GSIQ+I  IPQ +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNIPNIPQDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 73/91 (80%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++ LN QIFETIY+  L ASCE+A  DGPY +YEGSPVSQ
Sbjct: 505 GVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHACLTASCELAKVDGPYSSYEGSPVSQ 564

Query: 654 GILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GILQYDMWGVTPTDLWDW +LK     +G++
Sbjct: 565 GILQYDMWGVTPTDLWDWDSLKQEIAKHGVR 595



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE + +W+L C
Sbjct: 293 RPGAFAIYLEPWHMDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGEWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEKEG 378



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+  N + G   PMIS   YEI+M++AD  NSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYHNPKNGRPAPMISQSTYEIVMRHADEFNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|315056831|ref|XP_003177790.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
 gi|311339636|gb|EFQ98838.1| ribonucleoside-diphosphate reductase large subunit [Arthroderma
           gypseum CBS 118893]
          Length = 870

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/466 (68%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LY+KYE +G+    + A+KLW+AIL++Q ETG P+MLYKD+CN
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKDGRGRSTIKAQKLWYAILEAQTETGNPFMLYKDSCN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEYT+ DEVAVCNLASIAL  +++     Y+F KL +V +
Sbjct: 410 RKSNQKNLGTIRSSNLCTEIVEYTAPDEVAVCNLASIALPTFVDAVRGEYDFGKLHEVTQ 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID N YPVEEAR SN RHRPI +GVQGLAD F+ +RLPFD  E++LLN QI
Sbjct: 470 VVVRNLNRIIDGNHYPVEEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ AL ASCE+A  DGPY +YEGSPVSQGILQYDMW VTPTDLWDW +LK  I+KH
Sbjct: 530 FETLYHAALTASCELAKADGPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDSLKSDISKH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 590 GVRNSLLLAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ++  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 650 SDNMKNRIIADGGSIQNVPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 710 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQL 755



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  I+KHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 564 LQYDMWNVTPTDLWDWDSLKSDISKHGVRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GSIQ++  IP  +K LYKTVWE
Sbjct: 624 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSIQNVPNIPADIKALYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 684 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 744 APIQFTVDQEQL 755



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 79/104 (75%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++LLN QIFET+Y+ AL ASCE+A  D
Sbjct: 489 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKLLNIQIFETLYHAALTASCELAKAD 548

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY +YEGSPVSQGILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 549 GPYSSYEGSPVSQGILQYDMWNVTPTDLWDWDSLKSDISKHGVR 592



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 290 RPGAFAIYLEPWHADIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LY+KYE +G
Sbjct: 350 PNEAPGLADVYGEEFEALYEKYEKDG 375



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 32  DAAAITQRVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 82

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ VN + G   PMIS+K  EI+MK+A+ LNSAI+YDRDFNY +
Sbjct: 83  LHKQTKKQFSSVIDDLYHYVNPKNGRPAPMISEKTREIVMKHAEELNSAIVYDRDFNYQY 142

Query: 767 FGFK 770
           FGFK
Sbjct: 143 FGFK 146



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 385 KLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 420


>gi|115398293|ref|XP_001214738.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
 gi|114192929|gb|EAU34629.1| ribonucleoside-diphosphate reductase large chain [Aspergillus
           terreus NIH2624]
          Length = 886

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/512 (64%), Positives = 403/512 (78%), Gaps = 5/512 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 315 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 374

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY+KYE EG+  R V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 375 PNEAPGLADVYGDEFDALYEKYEKEGRGRRTVKAQKLWYAILEAQTETGNPFMLYKDACN 434

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++     Y+F KL +V +
Sbjct: 435 RKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDATRGEYDFGKLHEVVQ 494

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EAR SNMRHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 495 VLVRNLNKIIDINYYPVPEARKSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNIQI 554

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS ++A   GPY+TYEGSPVSQGILQYDMW  TPTDLWDW ALK KIA+ 
Sbjct: 555 FETIYHGALTASSDLAKELGPYETYEGSPVSQGILQYDMWDRTPTDLWDWDALKAKIAQT 614

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 615 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 674

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+T+L MAADRGAFIDQSQSLNI+
Sbjct: 675 SDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRTILQMAADRGAFIDQSQSLNIH 734

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA---MASKDARS 567
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++  A   +A   A  
Sbjct: 735 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLKVADTNVARVSAAY 794

Query: 568 QEEIQADQEQAMAAM--ICRRDNKEDCIGVQG 597
           ++   A    A AA+      +  E+  GV G
Sbjct: 795 KKRTGAPASSAYAAVPRAAETNGHEESNGVNG 826



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 589 LQYDMWDRTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 648

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 649 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWE 708

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T+L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 709 ISQRTILQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 768

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 769 APIQFTVDQEQL 780



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 315 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 374

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY+KYE EG
Sbjct: 375 PNEAPGLADVYGDEFDALYEKYEKEG 400



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS ++A   GPY+TYEGSPV
Sbjct: 525 ALGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGALTASSDLAKELGPYETYEGSPV 584

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW ALK      G++
Sbjct: 585 SQGILQYDMWDRTPTDLWDWDALKAKIAQTGVR 617



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 57  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 107

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +L++ VN       PMIS + YE +MK+AD LNSAI+YDRDFNYNF
Sbjct: 108 LHKQTKKQFSLVISDLFHYVNPRNNKPAPMISKETYETVMKHADELNSAIVYDRDFNYNF 167

Query: 767 FGFK 770
           FGFK
Sbjct: 168 FGFK 171



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 406 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 445


>gi|258566183|ref|XP_002583836.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
 gi|237907537|gb|EEP81938.1| ribonucleoside-diphosphate reductase large chain 1 [Uncinocarpus
           reesii 1704]
          Length = 884

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/469 (67%), Positives = 388/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  Y++P    Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID N YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLIRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ +L ASC++A  DGPY+TYEGSPVSQGILQYDMW VTP+DLWDW +LK++IAKH
Sbjct: 533 FETIYHASLTASCDLAKIDGPYETYEGSPVSQGILQYDMWNVTPSDLWDWDSLKKEIAKH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           + E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  A
Sbjct: 713 LKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKVA 761



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 137/195 (70%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP+DLWDW +LK++IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPSDLWDWDSLKKEIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 747 APIQFTVDQEQLKVA 761



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ +L ASC++A  DGPY+TYEGSPV
Sbjct: 503 AVGVQGLADAFLALRLPFDSPEARQLNTQIFETIYHASLTASCDLAKIDGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW VTP+DLWDW +LK     +G++
Sbjct: 563 SQGILQYDMWNVTPSDLWDWDSLKKEIAKHGVR 595



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 293 RPGAFAIYIEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEQYEKEG 378



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ VN +     PMIS K YEI+MK+++ LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSSVIDDLYHYVNPKNNRPAPMISQKTYEIVMKHSEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|313675914|ref|YP_004053910.1| ribonucleoside-diphosphate reductase subunit alpha [Marivirga
           tractuosa DSM 4126]
 gi|312942612|gb|ADR21802.1| ribonucleoside-diphosphate reductase, alpha subunit [Marivirga
           tractuosa DSM 4126]
          Length = 826

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/529 (62%), Positives = 411/529 (77%), Gaps = 27/529 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY +W+ D FM+RVE++A+W+L  
Sbjct: 293 RKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANAEWTLFD 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL +++G+ F+ LY+KYE EGK  + V A++LWF IL+SQIETGTPYMLYKDA N
Sbjct: 353 PNEASGLDEAYGDDFEKLYEKYEREGKGRKTVKAQELWFEILESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP---ADKTYNFTKLKD 267
           +KSNQ+NLGTIK SNLCTEI+EYTSKDEVAVCNLASIAL M++       K ++  KL D
Sbjct: 413 KKSNQKNLGTIKSSNLCTEILEYTSKDEVAVCNLASIALPMFVQEDENGQKFFDHDKLYD 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           +    T NLN++IDVN+YPVEEAR SNMRHRPIG+GVQGLAD F+ +R PFD  ESR LN
Sbjct: 473 ITYTATVNLNRVIDVNYYPVEEARTSNMRHRPIGLGVQGLADAFMLLRYPFDSEESRKLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
           K+IFETIY+ A+ AS ++A ++GPY+TY+GSPVS+GI Q+DMW V PTD WDW  LK+++
Sbjct: 533 KEIFETIYFAAMTASKDLAVKEGPYETYKGSPVSKGIFQFDMWNVEPTDRWDWTTLKQEV 592

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL+RDL+E 
Sbjct: 593 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFVVVNKHLMRDLIER 652

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W+DNMK++LI  NGS+QDI  IPQ +K+LYKTVWEI QK ++DMAADRGA+I QSQS+
Sbjct: 653 GMWNDNMKNKLIAANGSVQDIADIPQDIKELYKTVWEISQKAIIDMAADRGAYICQSQSM 712

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM----------- 556
           N++M + N+ KM+SMHF+ WK GLKTGMYYLR+K A +AIQFT+DK+++           
Sbjct: 713 NLFMQDPNFGKMTSMHFYAWKKGLKTGMYYLRSKAATSAIQFTVDKSQLNEPQPEQKPQD 772

Query: 557 -ANAMASKDARSQEEI-------QADQEQAMAAM-----ICRRDNKEDC 592
              +  +K  R Q  +       QA+ E  +AA+      C  DN +DC
Sbjct: 773 ITQSTDTKVNRPQNSVGTQGQGPQANAEDDLAALKAAQVACSLDNPDDC 821



 Score =  307 bits (786), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 145/252 (57%), Positives = 186/252 (73%), Gaps = 24/252 (9%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW V PTD WDW  LK+++ K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 570 FQFDMWNVEPTDRWDWTTLKQEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR LSGEF VVN HL+RDL+E G+W+DNMK++LI  NGS+QDI  IPQ +K+LYKTVWE
Sbjct: 630 TRRTLSGEFVVVNKHLMRDLIERGMWNDNMKNKLIAANGSVQDIADIPQDIKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGA+I QSQS+N++M + N+ KM+SMHF+ WK GLKTGMYYLR+K A 
Sbjct: 690 ISQKAIIDMAADRGAYICQSQSMNLFMQDPNFGKMTSMHFYAWKKGLKTGMYYLRSKAAT 749

Query: 949 NAIQFTIDKTKM------------ANAMASKDTRSQEEI-------QADQEQAMAAM--- 986
           +AIQFT+DK+++              +  +K  R Q  +       QA+ E  +AA+   
Sbjct: 750 SAIQFTVDKSQLNEPQPEQKPQDITQSTDTKVNRPQNSVGTQGQGPQANAEDDLAALKAA 809

Query: 987 --ICRRDNKEDC 996
              C  DN +DC
Sbjct: 810 QVACSLDNPDDC 821



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY +W+ D FM+RVE++A+W+L  
Sbjct: 293 RKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANAEWTLFD 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL +++G+ F+ LY+KYE EG
Sbjct: 353 PNEASGLDEAYGDDFEKLYEKYEREG 378



 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PFD  ESR LNK+IFETIY+ A+ AS ++A ++GPY+TY+GSPVS
Sbjct: 507 LGVQGLADAFMLLRYPFDSEESRKLNKEIFETIYFAAMTASKDLAVKEGPYETYKGSPVS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI Q+DMW V PTD WDW  LK
Sbjct: 567 KGIFQFDMWNVEPTDRWDWTTLK 589



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF IL+SQIETGTPYMLYKDA N+KSNQ+NL  I+
Sbjct: 384 VKAQELWFEILESQIETGTPYMLYKDAANKKSNQKNLGTIK 424



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 39/53 (73%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            ++ LY  V+ +TG   P++S + Y II K+A +L+SAIIYDRDF Y+FFGFK
Sbjct: 97  TMKRLYTYVDAKTGQNAPLLSTETYGIIKKHAAQLDSAIIYDRDFGYDFFGFK 149


>gi|407917669|gb|EKG10973.1| Ribonucleotide reductase large subunit [Macrophomina phaseolina
           MS6]
          Length = 908

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/479 (66%), Positives = 392/479 (81%), Gaps = 1/479 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFSFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEQNGTWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY++YE EG+    V A+KLW+AIL++Q+ETG P+MLYKD CN
Sbjct: 353 PNECPGLADVYGEEFEALYEQYEKEGRGRETVRAQKLWYAILEAQVETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLC EIVEYT+ DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCCEIVEYTAPDEVAVCNLASLALPTFVDVEEGVYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKIID+N YPV EAR SNMRHRPI +GV GLAD F+ +R+PFD  E++ LN QI
Sbjct: 473 VLVKNLNKIIDINHYPVPEARKSNMRHRPIAVGVNGLADAFLALRMPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS E+A RDGPY+T++GSP SQGILQYDMW  TPTDLWDW +LK +IA+H
Sbjct: 533 FETIYHAALTASVELAKRDGPYETFQGSPASQGILQYDMWNKTPTDLWDWDSLKAEIAQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GTRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I +NGSIQ I  IP  +K LYKTVWE+ Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDQMKNRIIASNGSIQQIPNIPDDIKALYKTVWELSQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +  A  +  AR+Q+
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEALKVA-DTNVARTQK 770



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/269 (55%), Positives = 187/269 (69%), Gaps = 14/269 (5%)

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMK------NADRLNSAIIYDRDF 762
           RKSN ++  +   +  + +     R P  S +  ++ ++      +A    S  +  RD 
Sbjct: 493 RKSNMRHRPIAVGVNGLADAFLALRMPFDSPEAKQLNIQIFETIYHAALTASVELAKRDG 552

Query: 763 NYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL 814
            Y  F          +YDMW  TPTDLWDW +LK +IA+HG RNSLL+APMPTAST+QIL
Sbjct: 553 PYETFQGSPASQGILQYDMWNKTPTDLWDWDSLKAEIAQHGTRNSLLVAPMPTASTSQIL 612

Query: 815 GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 874
           G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW D MK+++I +NGSIQ I  
Sbjct: 613 GFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLWSDQMKNRIIASNGSIQQIPN 672

Query: 875 IPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLG 934
           IP  +K LYKTVWE+ Q+T++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLG
Sbjct: 673 IPDDIKALYKTVWELSQRTIVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLG 732

Query: 935 LKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           LKTGMYYLRT+ AA  IQFT+D+  +  A
Sbjct: 733 LKTGMYYLRTQAAAAPIQFTVDQEALKVA 761



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFSFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEQNGTWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY++YE EG
Sbjct: 353 PNECPGLADVYGEEFEALYEQYEKEG 378



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +R+PFD  E++ LN QIFETIY+ AL AS E+A RDGPY+T++GSP 
Sbjct: 503 AVGVNGLADAFLALRMPFDSPEAKQLNIQIFETIYHAALTASVELAKRDGPYETFQGSPA 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK     +G +
Sbjct: 563 SQGILQYDMWNKTPTDLWDWDSLKAEIAQHGTR 595



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GV+  +L + AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYQGVSTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +LYN VN +    +PMIS + +EI+ K+A+ LNSAI+YDRDF Y +FGFK
Sbjct: 90  TKKQFSAVIADLYNYVNPKNRKHSPMISKETFEIVNKHAEELNSAIVYDRDFQYQYFGFK 149



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q+ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQVETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|242094852|ref|XP_002437916.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
 gi|241916139|gb|EER89283.1| hypothetical protein SORBIDRAFT_10g004780 [Sorghum bicolor]
          Length = 815

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/523 (61%), Positives = 407/523 (77%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+FD+LYKKYE++GK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGEEFDNLYKKYESQGKAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+E+TS +E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTSPNETAVCNLASIALPRFVREKGVPLESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY +L+AS E+AA++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVSKGILQPDMWDV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P++ W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSNRWNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMA-NAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  N     + +  EE   D E  MA M+C  +N+E+C+ 
Sbjct: 773 TTLLKENGNVVSNGKPTEE---DVEAKMAQMVCSLNNREECMA 812



 Score =  295 bits (755), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 175/227 (77%), Gaps = 4/227 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P++ W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWDVVPSNRWNWPSLRETISKVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMA-NAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  N     + +  EE   D E  MA M+C  +N+E+C+
Sbjct: 768 KFTVDTTLLKENGNVVSNGKPTEE---DVEAKMAQMVCSLNNREECM 811



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQNNGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+FD+LYKKYE++G
Sbjct: 353 PNEAPGLADCWGEEFDNLYKKYESQG 378



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY +L+AS E+AA++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P++ W+W +L+      G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWDVVPSNRWNWPSLRETISKVGIR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + ++
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQ 677



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y   N+ +G   P++++  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYMHFNERSGLMAPLVAEDVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG    +L+    +  K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL
Sbjct: 361 DCWGEEFDNLYKKYESQGKAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|170579939|ref|XP_001895047.1| ribonucleoside-diphosphate reductase large chain [Brugia malayi]
 gi|158598142|gb|EDP36102.1| ribonucleoside-diphosphate reductase large chain, putative [Brugia
           malayi]
          Length = 1061

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/475 (66%), Positives = 387/475 (81%), Gaps = 10/475 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL DSWGE F+ LY +YE EG++ +QVPARKLW  I+ +QIETG PYM+YKD CN
Sbjct: 363 PAECPGLEDSWGEAFEKLYTQYEEEGRYRKQVPARKLWETIVFTQIETGMPYMVYKDTCN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQQNLGTIKCSNLCTE+V Y+S++E+AVCNLASIAL  ++  ++  Y+F  L +V K
Sbjct: 423 RKTNQQNLGTIKCSNLCTEVVLYSSREEIAVCNLASIALGRFVT-SEMKYDFKMLHEVTK 481

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNK+ID N+YP+ EA  SN RHRPIGIGVQGLAD FI MR PF   ++R LNK+I
Sbjct: 482 VVVKNLNKVIDRNYYPIPEAERSNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRI 541

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASC++A   GPY++YEGSP+S+GILQ+DMWGVTPTD  DW  L+EKIAK 
Sbjct: 542 FETIYYAALEASCDLAKEQGPYESYEGSPISKGILQFDMWGVTPTDQCDWGTLREKIAKF 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNS+L++PMPTASTAQILGNNES EPYTSN+Y+R VLSG FQ+ N HL+ DL+ L LW
Sbjct: 602 GIRNSVLLSPMPTASTAQILGNNESIEPYTSNVYTRNVLSGSFQIFNMHLMNDLMHLDLW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK ++I N GSIQ+IE IPQ+++DLY+TVWE+ Q+ ++DMAADRGAFIDQSQSLNI+
Sbjct: 662 DDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWEMSQRDIIDMAADRGAFIDQSQSLNIF 721

Query: 511 MAEINYAKMSSMHFHGWK---------LGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A  NY  ++SMHF+GW+          GLKTGMYYLRT+PA +A+QFT+DKT++
Sbjct: 722 IARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGMYYLRTRPAVDAVQFTVDKTRL 776



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 166/201 (82%), Gaps = 9/201 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPTD  DW  L+EKIAK G+RNS+L++PMPTASTAQILGNNES EPYTSN+Y
Sbjct: 576 LQFDMWGVTPTDQCDWGTLREKIAKFGIRNSVLLSPMPTASTAQILGNNESIEPYTSNVY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +R VLSG FQ+ N HL+ DL+ L LWDD+MK ++I N GSIQ+IE IPQ+++DLY+TVWE
Sbjct: 636 TRNVLSGSFQIFNMHLMNDLMHLDLWDDDMKLEIIKNKGSIQNIERIPQEIRDLYRTVWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWK---------LGLKTGM 939
           + Q+ ++DMAADRGAFIDQSQSLNI++A  NY  ++SMHF+GW+          GLKTGM
Sbjct: 696 MSQRDIIDMAADRGAFIDQSQSLNIFIARPNYGNITSMHFYGWQKVCTAFLMYKGLKTGM 755

Query: 940 YYLRTKPAANAIQFTIDKTKM 960
           YYLRT+PA +A+QFT+DKT++
Sbjct: 756 YYLRTRPAVDAVQFTVDKTRL 776



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDFLEL+KN G E  R RDLF+GLW+PD FM RV  D  WSLMC
Sbjct: 303 RPGAFAVYLEPWHADIFDFLELRKNVGDELERCRDLFFGLWVPDLFMERVRDDKIWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL DSWGE F+ LY +YE EG
Sbjct: 363 PAECPGLEDSWGEAFEKLYTQYEEEG 388



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF   ++R LNK+IFETIYY ALEASC++A   GPY++YEGSP+S
Sbjct: 513 IGVQGLADAFILMRYPFTSEKARDLNKRIFETIYYAALEASCDLAKEQGPYESYEGSPIS 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTPTD  DW  L+     +G++
Sbjct: 573 KGILQFDMWGVTPTDQCDWGTLREKIAKFGIR 604



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  I+ +QIETG PYM+YKD CNRK+NQQNL  I+
Sbjct: 398 KLWETIVFTQIETGMPYMVYKDTCNRKTNQQNLGTIK 434



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     GVT  +L + AA ++ A +      +A L S+I             ++K
Sbjct: 49  ISQKVIAGLYKGVTTVELDNLAA-EIAADMITKHPDYATLASRITVSN--------LHKK 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   ++   LYN  + ++G   P+IS + ++II  NA+ L+SAI+++RD+ Y +FG K
Sbjct: 100 TEKSFSKLSRRLYNATHPKSGRHMPLISKELFDIIQNNANLLDSAIVHERDYLYTYFGLK 159


>gi|171690020|ref|XP_001909942.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944965|emb|CAP71076.1| unnamed protein product [Podospora anserina S mat+]
          Length = 901

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/466 (68%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 287 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 347 PNECPGLADCYGEEFEALYEKYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 406

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLG I+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++  +  ++F KL +V +
Sbjct: 407 RKSNQQNLGVIRSSNLCTEIVEYSAPDEVAVCNLASLALPQFVDYNEAKFDFKKLHEVTQ 466

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV +NLNKIIDVN YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 467 IVVRNLNKIIDVNHYPVKEAYNSNMRHRPIGLGVQGLADAFLALRMPFESAEARELNKQI 526

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  SC++A   G Y TYEGSPVS+GILQYDMW V P+DLWDW  LK +I K+
Sbjct: 527 FETIYHAALTMSCQLAKEQGTYSTYEGSPVSKGILQYDMWNVKPSDLWDWDELKAEIKKN 586

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 587 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 646

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 647 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 706

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 707 MRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 752



 Score =  289 bits (740), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW  LK +I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 561 LQYDMWNVKPSDLWDWDELKAEIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 621 QRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 681 ISQRTIVQMAADRGAFIDQSQSLNIHMRDPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 740

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 741 QPIQFTVDQEAL 752



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 287 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEIRARDLFLALWIPDLFMKRVEKNGEWTLMC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 347 PNECPGLADCYGEEFEALYEKYEKEG 372



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 66/84 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL  SC++A   G Y TYEGSPVS
Sbjct: 498 LGVQGLADAFLALRMPFESAEARELNKQIFETIYHAALTMSCQLAKEQGTYSTYEGSPVS 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKV 676
           +GILQYDMW V P+DLWDW  LK 
Sbjct: 558 KGILQYDMWNVKPSDLWDWDELKA 581



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 33  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 83

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMI+ + YE +M++ D L+SAI+YDRDFNY +FGFK
Sbjct: 84  TKKQWSSVVSDLYHYVNPKNGRPSPMIAKETYECVMRHKDDLDSAIVYDRDFNYQYFGFK 143



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 33/36 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQQNL VI
Sbjct: 382 KLWYAILEAQTETGNPFMLYKDACNRKSNQQNLGVI 417


>gi|390603430|gb|EIN12822.1| ribonucleotide reductase alpha subunit [Punctularia strigosozonata
           HHB-11173 SS5]
          Length = 887

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/466 (68%), Positives = 390/466 (83%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+F++L+KN GKEE RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFEFIDLRKNHGKEEVRARDLFYALWVPDLFMKRVEANGEWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WGE+FD LY+KYE EG+  + +PA+KLW+AI+++QIETG P+MLYKDA N
Sbjct: 354 PNEAPGLHEVWGEEFDKLYEKYEKEGRARKTIPAQKLWYAIMEAQIETGGPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY+S DE AVCNLASIAL  ++   +  Y+F +L  VAK
Sbjct: 414 SKSNQQNLGTIKSSNLCTEIMEYSSPDETAVCNLASIALPTFVK--NGVYDFKRLHAVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN+IIDVN+YPV EAR SN+RHRPIG+GVQGLAD F+ +R+PFD  E++ LN QI
Sbjct: 472 VVTFNLNRIIDVNYYPVPEARRSNIRHRPIGVGVQGLADTFMILRMPFDSPEAKELNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIAA DGPY+T++GSP SQG LQ+D+WGVTP+ LWDW +LK+KI + 
Sbjct: 532 FETIYHAALEASCEIAAVDGPYETFQGSPASQGQLQFDLWGVTPSGLWDWQSLKDKIMQT 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+L LW
Sbjct: 592 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDLKLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+ +I NNGSIQ I GIP  +K +YKTVWEI QK VLDMAADRGAFI QSQSLN++
Sbjct: 652 NDQMKNMIIANNGSIQSIAGIPDDIKAIYKTVWEISQKKVLDMAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D+T +
Sbjct: 712 LQSPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQTVL 757



 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGVTP+ LWDW +LK+KI + G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 LQFDLWGVTPSGLWDWQSLKDKIMQTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+L LW+D MK+ +I NNGSIQ I GIP  +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVDLKLWNDQMKNMIIANNGSIQSIAGIPDDIKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDMAADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVLDMAADRGAFICQSQSLNVHLQSPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKM 960
            AIQFT+D+T +
Sbjct: 746 QAIQFTVDQTVL 757



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+F++L+KN GKEE RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFEFIDLRKNHGKEEVRARDLFYALWVPDLFMKRVEANGEWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WGE+FD LY+KYE EG
Sbjct: 354 PNEAPGLHEVWGEEFDKLYEKYEKEG 379



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E++ LN QIFETIY+ ALEASCEIAA DGPY+T++GSP S
Sbjct: 503 VGVQGLADTFMILRMPFDSPEAKELNIQIFETIYHAALEASCEIAAVDGPYETFQGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WGVTP+ LWDW +LK   +  GL+
Sbjct: 563 QGQLQFDLWGVTPSGLWDWQSLKDKIMQTGLR 594



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +    VI +LY  VN + G    MIS + Y+++M NAD L+SAIIYDRDFNYNFF
Sbjct: 88  HKETKKSFSSVIRDLYTYVNPKNGRPAGMISKETYDVVMANADTLDSAIIYDRDFNYNFF 147

Query: 768 GFK 770
           GFK
Sbjct: 148 GFK 150



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI+++QIETG P+MLYKDA N KSNQQNL  I+
Sbjct: 389 KLWYAIMEAQIETGGPFMLYKDAANSKSNQQNLGTIK 425


>gi|413943018|gb|AFW75667.1| hypothetical protein ZEAMMB73_410950 [Zea mays]
          Length = 835

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/523 (62%), Positives = 403/523 (77%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ +WSL C
Sbjct: 313 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQSNGEWSLFC 372

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+FD+LYKKYE++GK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 373 PNEAPGLADCWGEEFDNLYKKYESQGKAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCN 432

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+E+TS  E AVCNLASIAL  ++                 
Sbjct: 433 RKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGS 492

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 493 SDSKNRYFDFEKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 552

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E+  LNK IFETIYY AL++S E+A ++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 553 LLGMPFDSLEAHQLNKDIFETIYYHALKSSAELAVKEGPYETYEGSPVSKGILQPDMWNV 612

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+  W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 613 VPSTRWNWPSLRETISKAGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 672

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 673 FVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQKTLVD 732

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 733 MAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 792

Query: 553 KTKMA-NAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  N     D +  EE   D E  MA M+C  +N+E+C+ 
Sbjct: 793 TTLLKENGNGMNDGKPTEE---DVEAKMAQMVCSFNNREECLA 832



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 174/227 (76%), Gaps = 4/227 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+  W+W +L+E I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 608 DMWNVVPSTRWNWPSLRETISKAGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 667

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+Q+I ++GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 668 VLSGEFVVVNKHLLHDLTEMGIWTPTLKNQIIYDDGSVQKIAEIPDDLKAIYKTVWEIKQ 727

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 728 KTLVDMAVDRGCYIDQSQSLNVHMEQANFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 787

Query: 952 QFTIDKTKMA-NAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  N     D +  EE   D E  MA M+C  +N+E+CL
Sbjct: 788 KFTVDTTLLKENGNGMNDGKPTEE---DVEAKMAQMVCSFNNREECL 831



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ +WSL C
Sbjct: 313 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWVPDLFMQRVQSNGEWSLFC 372

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+FD+LYKKYE++G
Sbjct: 373 PNEAPGLADCWGEEFDNLYKKYESQG 398



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 97/158 (61%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E+  LNK IFETIYY AL++S E+A ++GPY+TYEGSPVS
Sbjct: 542 IGVQGLADTFILLGMPFDSLEAHQLNKDIFETIYYHALKSSAELAVKEGPYETYEGSPVS 601

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+  W+W +L+      G++   ++L + + T  T  +L  + C    
Sbjct: 602 KGILQPDMWNVVPSTRWNWPSLRETISKAGIR--NSLLVAPMPTASTSQILGNNECFEPY 659

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + ++
Sbjct: 660 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPTLKNQ 697



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG    +L+    +  K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL
Sbjct: 381 DCWGEEFDNLYKKYESQGKAKKVVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNL 440

Query: 717 EVIE 720
             I+
Sbjct: 441 GTIK 444



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 40/52 (76%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           I+++Y   N+ +G   P++++  YEIIM NA RL+S IIYDRDF+Y++FGFK
Sbjct: 118 IKDMYRHFNERSGLMAPLVAEDVYEIIMNNAARLDSEIIYDRDFDYDYFGFK 169


>gi|342884077|gb|EGU84420.1| hypothetical protein FOXB_05085 [Fusarium oxysporum Fo5176]
          Length = 897

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/466 (67%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE EGK  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEKEGKGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +IN  +  Y+F KL  V++
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDEACYDFKKLHKVSQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVIRNLNKIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS ++A  +GPY T++GSP S+GILQ+DMW V P+DLWDW  L+E++  H
Sbjct: 533 FETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWNVKPSDLWDWETLREEVKTH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GIRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPADVKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQQAL 758



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 158/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW  L+E++  HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWNVKPSDLWDWETLREEVKTHGIRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADVKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQQAL 758



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGEEFEALYEKYEKEG 378



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL AS ++A  +GPY T++GSP S
Sbjct: 504 LGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW  L+     +G++
Sbjct: 564 EGILQFDMWNVKPSDLWDWETLREEVKTHGIR 595



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMIS + YE +M++ + L+SAI+YDRDF Y +FGFK
Sbjct: 90  TKKQWSAVVSDLYHYVNPKNGRPSPMISKETYECVMRHKEELDSAIVYDRDFQYQYFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|313233631|emb|CBY09802.1| unnamed protein product [Oikopleura dioica]
 gi|313245650|emb|CBY40318.1| unnamed protein product [Oikopleura dioica]
          Length = 832

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/538 (60%), Positives = 417/538 (77%), Gaps = 39/538 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+FL+ KKNTG EE RARDLFY LWIPD FM+RVES+  W+L C
Sbjct: 295 RPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLFMKRVESNGDWTLFC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WGE+F+ L++KYE EG+    + A+ LW+ I+++QIE G PYMLYKDACN
Sbjct: 355 PDEAPGLHECWGEEFEALFEKYEKEGRGKETIKAQALWYKIIEAQIEVGVPYMLYKDACN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNFTKLKD 267
           RKSNQQNLGTIKCSNLCTEIVEY+SKDEVAVCNLAS++L  +I   D+    Y+F  L D
Sbjct: 415 RKSNQQNLGTIKCSNLCTEIVEYSSKDEVAVCNLASLSLPAFIRKNDQGFSVYDFQDLYD 474

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
             KIVT+NLNK+ID+NFYPVE+AR SNM+HRPIGIGVQGLAD F  ++L F+ +E++LLN
Sbjct: 475 KTKIVTRNLNKVIDINFYPVEQARFSNMQHRPIGIGVQGLADTFCMLKLAFESDEAKLLN 534

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEG------------SPVSQGILQYDMWGVTPT 375
           KQIFETIY+ A+EASCE+A ++GPY ++              SP++QG  Q+D+WGVTPT
Sbjct: 535 KQIFETIYFAAVEASCELAEKEGPYLSFRAHTHPITGQKNPDSPMAQGKFQFDLWGVTPT 594

Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
           DLWDW +L+EK+ +HGVRNSLL++PMPTASTAQILGNNES EP+T+NIY+RRVLSGEFQV
Sbjct: 595 DLWDWDSLREKVTRHGVRNSLLVSPMPTASTAQILGNNESIEPFTNNIYTRRVLSGEFQV 654

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN HLLR+L E+  WDD ++ Q++ +NGSIQ+++ IP  +K+ Y+TVWEI QK VL MAA
Sbjct: 655 VNPHLLRELTEINYWDDEIRQQIVQDNGSIQNLD-IPADIKERYRTVWEIKQKNVLQMAA 713

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           DRG FIDQSQSLNI++A+  Y  ++SMHF GWK+GLKTGMYYLRTKPAA AI+FT+DK+K
Sbjct: 714 DRGPFIDQSQSLNIHVAQPKYGTLTSMHFTGWKMGLKTGMYYLRTKPAAAAIKFTVDKSK 773

Query: 556 M-------------------ANAMAS-KDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           +                     A++S K+  S+++I+   E   AA++C  +NKE C+
Sbjct: 774 VKVEEKENVEVKIEAATKSPVKAVSSLKEGPSEDDIRRLNE---AALVCSLENKEACM 828



 Score =  306 bits (784), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 146/249 (58%), Positives = 192/249 (77%), Gaps = 24/249 (9%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WGVTPTDLWDW +L+EK+ +HGVRNSLL++PMPTASTAQILGNNES EP+T+NIY
Sbjct: 584 FQFDLWGVTPTDLWDWDSLREKVTRHGVRNSLLVSPMPTASTAQILGNNESIEPFTNNIY 643

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR+L E+  WDD ++ Q++ +NGSIQ+++ IP  +K+ Y+TVWE
Sbjct: 644 TRRVLSGEFQVVNPHLLRELTEINYWDDEIRQQIVQDNGSIQNLD-IPADIKERYRTVWE 702

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VL MAADRG FIDQSQSLNI++A+  Y  ++SMHF GWK+GLKTGMYYLRTKPAA
Sbjct: 703 IKQKNVLQMAADRGPFIDQSQSLNIHVAQPKYGTLTSMHFTGWKMGLKTGMYYLRTKPAA 762

Query: 949 NAIQFTIDKTKM-------------------ANAMAS-KDTRSQEEIQADQEQAMAAMIC 988
            AI+FT+DK+K+                     A++S K+  S+++I+   E   AA++C
Sbjct: 763 AAIKFTVDKSKVKVEEKENVEVKIEAATKSPVKAVSSLKEGPSEDDIRRLNE---AALVC 819

Query: 989 RRDNKEDCL 997
             +NKE C+
Sbjct: 820 SLENKEACM 828



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+FL+ KKNTG EE RARDLFY LWIPD FM+RVES+  W+L C
Sbjct: 295 RPGAFAVYLEPWHADIFEFLDAKKNTGSEETRARDLFYALWIPDLFMKRVESNGDWTLFC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WGE+F+ L++KYE EG
Sbjct: 355 PDEAPGLHECWGEEFEALFEKYEKEG 380



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 12/104 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG---- 648
           IGVQGLAD F  ++L F+ +E++LLNKQIFETIY+ A+EASCE+A ++GPY ++      
Sbjct: 509 IGVQGLADTFCMLKLAFESDEAKLLNKQIFETIYFAAVEASCELAEKEGPYLSFRAHTHP 568

Query: 649 --------SPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
                   SP++QG  Q+D+WGVTPTDLWDW +L+     +G++
Sbjct: 569 ITGQKNPDSPMAQGKFQFDLWGVTPTDLWDWDSLREKVTRHGVR 612



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%), Gaps = 1/54 (1%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVIE+L N V    G + P+IS+K Y+I++ N D+LNSA+I+DRD+ YN+FGFK
Sbjct: 99  EVIEDLRN-VEGYNGKKKPLISEKTYKIVVANKDKLNSAVIHDRDYEYNYFGFK 151



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW+ I+++QIE G PYMLYKDACNRKSNQQNL  I+
Sbjct: 391 LWYKIIEAQIEVGVPYMLYKDACNRKSNQQNLGTIK 426


>gi|156083304|ref|XP_001609136.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis
           T2Bo]
 gi|154796386|gb|EDO05568.1| ribonucleoside-diphosphate reductase large chain [Babesia bovis]
          Length = 838

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/521 (63%), Positives = 404/521 (77%), Gaps = 14/521 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI DFL+L+KN G EE RARDLFY LWIPD FM+RVES+  W+LMC
Sbjct: 318 RKGSFAIYLEPWHADIMDFLDLRKNHGAEEARARDLFYALWIPDLFMKRVESNGDWTLMC 377

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL D WG++F+ LY KYE EG   + +PA+ LWFAIL SQIETG P+MLYKDACN
Sbjct: 378 PDECRGLYDVWGDEFEALYTKYEMEGLGRKTIPAQTLWFAILQSQIETGNPFMLYKDACN 437

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLC EIV+YTS +EVAVCNLASIAL MY++  +KTY+F KL DVA+
Sbjct: 438 AKSNQQNLGTIKSSNLCCEIVQYTSPEEVAVCNLASIALPMYVDKENKTYDFKKLYDVAR 497

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLNK+ID N+YPV EA+ SN RHRPIG+GVQGLAD F+ MR PF+  E++ LN++I
Sbjct: 498 VITYNLNKVIDRNYYPVPEAKVSNHRHRPIGVGVQGLADTFMLMRYPFESEEAKELNRRI 557

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIYYG L+ S  +A + G Y++Y GSP SQG LQ+D+WG T  + LWDW  LK+++AK
Sbjct: 558 FETIYYGCLDESISLAEKYGTYESYPGSPASQGKLQFDLWGATVDNKLWDWDGLKQRMAK 617

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSL +APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLLRDLV+LGL
Sbjct: 618 HGLRNSLFLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLRDLVDLGL 677

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD MK++LI  NGS++ IEGIPQ +KDLYKTVWEI QK+++DMAADRG FIDQSQSLNI
Sbjct: 678 WDDAMKEKLIAYNGSLRHIEGIPQHIKDLYKTVWEIKQKSIIDMAADRGIFIDQSQSLNI 737

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK--TKMANAM------- 560
           Y+ +  + K++SMHF+GWK GLKTG YYLRT+ A +AI+FT+D   ++MA A        
Sbjct: 738 YLDQPTFGKLTSMHFYGWKKGLKTGTYYLRTQAATDAIKFTVDTSVSQMAKATSQQQRAK 797

Query: 561 ASKDARSQEEIQADQEQAMAAMICR----RDNKEDCIGVQG 597
           A+    + E      E      +CR     ++ E C+   G
Sbjct: 798 ATDGVSTTEGSPVSTEDPSGYAVCRLRTDPNSNEPCVMCSG 838



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 176/231 (76%), Gaps = 10/231 (4%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG T  + LWDW  LK+++AKHG+RNSL +APMPTAST+QILGNNESFEPYTSNI
Sbjct: 592 LQFDLWGATVDNKLWDWDGLKQRMAKHGLRNSLFLAPMPTASTSQILGNNESFEPYTSNI 651

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLLRDLV+LGLWDD MK++LI  NGS++ IEGIPQ +KDLYKTVW
Sbjct: 652 YYRRVLSGEFFVVNPHLLRDLVDLGLWDDAMKEKLIAYNGSLRHIEGIPQHIKDLYKTVW 711

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK+++DMAADRG FIDQSQSLNIY+ +  + K++SMHF+GWK GLKTG YYLRT+ A
Sbjct: 712 EIKQKSIIDMAADRGIFIDQSQSLNIYLDQPTFGKLTSMHFYGWKKGLKTGTYYLRTQAA 771

Query: 948 ANAIQFTIDK--TKMANAM-------ASKDTRSQEEIQADQEQAMAAMICR 989
            +AI+FT+D   ++MA A        A+    + E      E      +CR
Sbjct: 772 TDAIKFTVDTSVSQMAKATSQQQRAKATDGVSTTEGSPVSTEDPSGYAVCR 822



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI DFL+L+KN G EE RARDLFY LWIPD FM+RVES+  W+LMC
Sbjct: 318 RKGSFAIYLEPWHADIMDFLDLRKNHGAEEARARDLFYALWIPDLFMKRVESNGDWTLMC 377

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL D WG++F+ LY KYE EGL
Sbjct: 378 PDECRGLYDVWGDEFEALYTKYEMEGL 404



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 70/105 (66%), Gaps = 1/105 (0%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +    ++   +GVQGLAD F+ MR PF+  E++ LN++IFETIYYG L+ S  +A + 
Sbjct: 517 AKVSNHRHRPIGVGVQGLADTFMLMRYPFESEEAKELNRRIFETIYYGCLDESISLAEKY 576

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           G Y++Y GSP SQG LQ+D+WG T  + LWDW  LK     +GL+
Sbjct: 577 GTYESYPGSPASQGKLQFDLWGATVDNKLWDWDGLKQRMAKHGLR 621



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 42/65 (64%), Gaps = 2/65 (3%)

Query: 658 YDMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           YD+WG     L+    ++ L    +    LWFAIL SQIETG P+MLYKDACN KSNQQN
Sbjct: 385 YDVWGDEFEALYTKYEMEGLGRKTIPAQTLWFAILQSQIETGNPFMLYKDACNAKSNQQN 444

Query: 716 LEVIE 720
           L  I+
Sbjct: 445 LGTIK 449



 Score = 44.7 bits (104), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 26/35 (74%)

Query: 736 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +IS++ Y+ IM N DR+N+ I Y RDF Y++FG K
Sbjct: 140 LISEEVYDFIMANIDRINAEIDYSRDFQYDYFGLK 174


>gi|156043867|ref|XP_001588490.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980]
 gi|154695324|gb|EDN95062.1| ribonucleotide reductase large subunit [Sclerotinia sclerotiorum
           1980 UF-70]
          Length = 910

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/466 (66%), Positives = 389/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+ YE  GK  + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGEEFEALYESYEKAGKGRKTIKAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEY++ DEVA CNLASIAL  ++N  + TY+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV+EAR SN RHRPI +GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNKIIDINYYPVQEARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +S EIA   GPY+TY+GSPVS+G LQYDMWGVTP+DLWDW +LK+ I +H
Sbjct: 533 FETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTPSDLWDWDSLKQSIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQS+NI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  292 bits (748), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDW +LK+ I +HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPSDLWDWDSLKQSIKQHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQS+NI+M +    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+ YE  G
Sbjct: 353 PNECPGLADVYGEEFEALYESYEKAG 378



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+ AL +S EIA   
Sbjct: 492 ARRSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALTSSVEIAKEL 551

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY+GSPVS+G LQYDMWGVTP+DLWDW +LK     +G++
Sbjct: 552 GPYETYQGSPVSKGELQYDMWGVTPSDLWDWDSLKQSIKQHGIR 595



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 70/124 (56%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY   N + G  +PMIS + +E +M++ + LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSHVIRDLYQYTNPKNGKASPMISKETFECVMRHEEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|361127300|gb|EHK99273.1| putative Ribonucleoside-diphosphate reductase large chain [Glarea
           lozoyensis 74030]
          Length = 993

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/483 (65%), Positives = 396/483 (81%), Gaps = 7/483 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F++L+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 321 RPGAFAIYLEPWHADVFEYLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGDWTLMC 380

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YE EG   + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 381 PNECPGLADVYGDEFEALYERYEKEGMGRKTIKAQKLWYSILEAQTETGNPFMLYKDACN 440

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY+S DEVA CNLAS+AL  +++  + TY+F KL DV +
Sbjct: 441 RKSNQKNLGTIRSSNLCTEIVEYSSPDEVACCNLASMALPTFVDINNGTYDFQKLHDVCQ 500

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNKII+VN+YPV EA+ SN RHRPI +GVQGLAD+F+ +RLPF+  E++ LN QI
Sbjct: 501 VVVKNLNKIIEVNYYPVPEAKKSNFRHRPIALGVQGLADVFLALRLPFESPEAKHLNIQI 560

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC +A + G Y+TYEGSPVS+G LQYDMWGVTPTDLWDWA+LK++I +H
Sbjct: 561 FETIYHAALTASCNLAKKLGTYETYEGSPVSKGELQYDMWGVTPTDLWDWASLKQEIKQH 620

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 621 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 680

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQS+NI+
Sbjct: 681 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIH 740

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK-------TKMANAMASK 563
           M +    K++SMHF GWK GLKTGMYYLRT  A+  IQFT+D+       T +A    SK
Sbjct: 741 MKDPTMGKITSMHFAGWKSGLKTGMYYLRTMAASAPIQFTVDQEALLVADTNVARERTSK 800

Query: 564 DAR 566
           + R
Sbjct: 801 NKR 803



 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/209 (66%), Positives = 169/209 (80%), Gaps = 7/209 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDWA+LK++I +HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 595 LQYDMWGVTPTDLWDWASLKQEIKQHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 654

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 655 SRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 714

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQS+NI+M +    K++SMHF GWK GLKTGMYYLRT  A+
Sbjct: 715 ISQRTIVQMAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKSGLKTGMYYLRTMAAS 774

Query: 949 NAIQFTIDK-------TKMANAMASKDTR 970
             IQFT+D+       T +A    SK+ R
Sbjct: 775 APIQFTVDQEALLVADTNVARERTSKNKR 803



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 74/87 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F++L+L+KN GKEE RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 321 RPGAFAIYLEPWHADVFEYLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGDWTLMC 380

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GL+D +G++F+ LY++YE EG+
Sbjct: 381 PNECPGLADVYGDEFEALYERYEKEGM 407



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD+F+ +RLPF+  E++ LN QIFETIY+ AL ASC +A + G Y+TYEGSPV
Sbjct: 531 ALGVQGLADVFLALRLPFESPEAKHLNIQIFETIYHAALTASCNLAKKLGTYETYEGSPV 590

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+G LQYDMWGVTPTDLWDWA+LK     +G++
Sbjct: 591 SKGELQYDMWGVTPTDLWDWASLKQEIKQHGIR 623



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 63  DAAAITQKVISGVYQGVTTFELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 113

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+  N      +PMIS + YE +MK+   LNSAI+YDRDFNY +
Sbjct: 114 LHKQTKKQFSSVISDLYHYTNPRNKKLSPMISKETYETVMKHEAELNSAIVYDRDFNYQY 173

Query: 767 FGFK 770
           FGFK
Sbjct: 174 FGFK 177



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 416 KLWYSILEAQTETGNPFMLYKDACNRKSNQKNLGTI 451


>gi|46121591|ref|XP_385350.1| hypothetical protein FG05174.1 [Gibberella zeae PH-1]
          Length = 913

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/466 (66%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 311 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMC 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE EGK  + + A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 371 PNECPGLADCYGDEFEALYEKYEREGKGRKSIKAQKLWYAILEAQTETGNPFMLYKDHCN 430

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS++L  +IN  D  Y+F KL +V +
Sbjct: 431 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLSLPSFINYEDACYDFKKLHEVTQ 490

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 491 VVVRNLNKIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQI 550

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S ++A  +GPY T++GSP S+GILQ+DMW V P+DLWDW  L+E +  H
Sbjct: 551 FETIYHAALTTSVQLAKEEGPYSTFKGSPASEGILQFDMWNVKPSDLWDWEPLREDVKTH 610

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 611 GIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 670

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I +NGSIQ+I  IP ++K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 671 SDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 730

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 731 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQENL 776



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW  L+E +  HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQFDMWNVKPSDLWDWEPLREDVKTHGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I +NGSIQ+I  IP ++K LYKTVWE
Sbjct: 645 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWE 704

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 705 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 764

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 765 APIQFTVDQENL 776



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 311 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMC 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE EG
Sbjct: 371 PNECPGLADCYGDEFEALYEKYEREG 396



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL  S ++A  +GPY T++GSP S
Sbjct: 522 LGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTTSVQLAKEEGPYSTFKGSPAS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW  L+     +G++
Sbjct: 582 EGILQFDMWNVKPSDLWDWEPLREDVKTHGIR 613



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 47/63 (74%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +Q   V+ +LY+ VN +    +PMIS + YE +M++ + L+SAI+YDRDFNYN+F
Sbjct: 105 HKQTKKQWSAVVSDLYHWVNPKNDRASPMISKETYECVMRHKEELDSAIVYDRDFNYNYF 164

Query: 768 GFK 770
           GF+
Sbjct: 165 GFR 167



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 406 KLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 441


>gi|189501949|ref|YP_001957666.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497390|gb|ACE05937.1| hypothetical protein Aasi_0536 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 790

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/504 (63%), Positives = 410/504 (81%), Gaps = 11/504 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWIPDLFMQRVENNEEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F+ LYKKYE EGK  + V A++LWFAIL++QIETG P+MLYKD+ N
Sbjct: 353 PNESPGLADCYGEEFERLYKKYEREGKARKSVKAQELWFAILEAQIETGMPFMLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+E+TS +EVAVCNLASIAL  +IN A K ++  KL ++  
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTSPEEVAVCNLASIALPKFINQAGK-FDHQKLYEITY 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLNKIID+N YPV EAR SN RHRPIGIGVQGLAD F+++R+PFD  E+R LNK I
Sbjct: 472 VITKNLNKIIDINHYPVPEARTSNFRHRPIGIGVQGLADTFLRLRMPFDSPEARGLNKDI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+ A+ AS ++A + GPY+T++GSP+S+GI Q+DMWGV P+   WDW  L++++  
Sbjct: 532 FETIYFAAMTASKDLAKQYGPYETFKGSPISKGIFQFDMWGVEPSSGRWDWETLRKEVQL 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DL+ LGL
Sbjct: 592 HGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLTDLINLGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD+NMK++LI  NGS+Q I+ IPQ +K+L++TVWEIPQK ++DMAADRGAFI QSQS+NI
Sbjct: 652 WDENMKNELIAANGSVQRIDRIPQHIKELHRTVWEIPQKAIIDMAADRGAFICQSQSMNI 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++ + N+AK++SMHF+ WK GLKTG+YYLRT+PAA+AI+FT+ K +  N +     + ++
Sbjct: 712 HLLDANFAKLTSMHFYAWKKGLKTGLYYLRTRPAADAIKFTLQKEQALNDIPVPQKKVEQ 771

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
           ++         +M+C  ++ EDC+
Sbjct: 772 QV---------SMVCDAEDSEDCL 786



 Score =  303 bits (776), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/230 (59%), Positives = 183/230 (79%), Gaps = 10/230 (4%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGV P+   WDW  L++++  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 566 FQFDMWGVEPSSGRWDWETLRKEVQLHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL DL+ LGLWD+NMK++LI  NGS+Q I+ IPQ +K+L++TVW
Sbjct: 626 YTRRVLSGEFIVVNKHLLTDLINLGLWDENMKNELIAANGSVQRIDRIPQHIKELHRTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EIPQK ++DMAADRGAFI QSQS+NI++ + N+AK++SMHF+ WK GLKTG+YYLRT+PA
Sbjct: 686 EIPQKAIIDMAADRGAFICQSQSMNIHLLDANFAKLTSMHFYAWKKGLKTGLYYLRTRPA 745

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           A+AI+FT+ K +  N +     + ++++         +M+C  ++ EDCL
Sbjct: 746 ADAIKFTLQKEQALNDIPVPQKKVEQQV---------SMVCDAEDSEDCL 786



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHSDIFEFLDLRKNHGKEELRARDLFYALWIPDLFMQRVENNEEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F+ LYKKYE EG
Sbjct: 353 PNESPGLADCYGEEFERLYKKYEREG 378



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+++R+PFD  E+R LNK IFETIY+ A+ AS ++A + GPY+T++GSP+S
Sbjct: 503 IGVQGLADTFLRLRMPFDSPEARGLNKDIFETIYFAAMTASKDLAKQYGPYETFKGSPIS 562

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           +GI Q+DMWGV P+   WDW  L+    ++G++
Sbjct: 563 KGIFQFDMWGVEPSSGRWDWETLRKEVQLHGVR 595



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWFAIL++QIETG P+MLYKD+ NRKSNQQNL  I+
Sbjct: 384 VKAQELWFAILEAQIETGMPFMLYKDSANRKSNQQNLGTIK 424



 Score = 46.2 bits (108), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 33/49 (67%)

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  ++ +TG    +I+   Y++I ++A  L+  I+Y RD++Y++FGFK
Sbjct: 101 LYTYIDPKTGENASLIASDVYKVIREHAALLDKTIVYKRDYDYDYFGFK 149


>gi|336370235|gb|EGN98576.1| hypothetical protein SERLA73DRAFT_92011 [Serpula lacrymans var.
           lacrymans S7.3]
 gi|336382991|gb|EGO24141.1| hypothetical protein SERLADRAFT_450431 [Serpula lacrymans var.
           lacrymans S7.9]
          Length = 889

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/473 (67%), Positives = 396/473 (83%), Gaps = 2/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDF++L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 294 RPGAFAIYLEPWHNDIFDFIDLRKNHGKEESRARDLFYALWIPDLFMKRVEANGEWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN    L + +GE+F+ LY+KYE EG+  R +PA+KLW+AIL++QIETG P+M YKDA N
Sbjct: 354 PNEAPNLHEVYGEEFEALYEKYEKEGRSRRTIPAQKLWYAILEAQIETGGPFMCYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+EY+S DE AVCNLAS+AL  +I   +  Y+F KL DVAK
Sbjct: 414 RKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASMALPSFI--VNGKYDFQKLHDVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNLN+IIDVN+YP  EAR SNMRHRPIG+GVQGLAD F+ +R+PFD  E++ LN QI
Sbjct: 472 VITKNLNRIIDVNYYPTPEARRSNMRHRPIGVGVQGLADAFMALRMPFDSPEAKELNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE+S E+A ++GPY+T++GSP  QG LQ+D+WGVTPTDLWDW +LKE+IA+ 
Sbjct: 532 FETIYHAALESSSELAEKEGPYETWKGSPAEQGQLQFDLWGVTPTDLWDWTSLKERIART 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+V   LLR+LV+LGLW
Sbjct: 592 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVCPWLLRELVDLGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+ +I NNGSIQ I GIP+ +K +YKTVWEI QK V+D+AADRGAFI QSQSLNI+
Sbjct: 652 NDQMKNMIIANNGSIQSIIGIPEDVKAIYKTVWEISQKKVIDLAADRGAFICQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           +      +++SMHF+GWK GLKTGMYY+RT+PAA AIQFT+D++ + +A  +K
Sbjct: 712 LQSPTLGQLTSMHFYGWKKGLKTGMYYMRTRPAAQAIQFTVDQSFIKDAQKNK 764



 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/199 (66%), Positives = 169/199 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGVTPTDLWDW +LKE+IA+ G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 LQFDLWGVTPTDLWDWTSLKERIARTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+V   LLR+LV+LGLW+D MK+ +I NNGSIQ I GIP+ +K +YKTVWE
Sbjct: 626 TRRVLAGEFQIVCPWLLRELVDLGLWNDQMKNMIIANNGSIQSIIGIPEDVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFI QSQSLNI++      +++SMHF+GWK GLKTGMYY+RT+PAA
Sbjct: 686 ISQKKVIDLAADRGAFICQSQSLNIHLQSPTLGQLTSMHFYGWKKGLKTGMYYMRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASK 967
            AIQFT+D++ + +A  +K
Sbjct: 746 QAIQFTVDQSFIKDAQKNK 764



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDF++L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 294 RPGAFAIYLEPWHNDIFDFIDLRKNHGKEESRARDLFYALWIPDLFMKRVEANGEWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    L + +GE+F+ LY+KYE EG
Sbjct: 354 PNEAPNLHEVYGEEFEALYEKYEKEG 379



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E++ LN QIFETIY+ ALE+S E+A ++GPY+T++GSP  
Sbjct: 503 VGVQGLADAFMALRMPFDSPEAKELNIQIFETIYHAALESSSELAEKEGPYETWKGSPAE 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WGVTPTDLWDW +LK      GL+
Sbjct: 563 QGQLQFDLWGVTPTDLWDWTSLKERIARTGLR 594



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 40  ITQKVIAGVYQGVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN--------LHKE 90

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+++LY  +N + G    MIS + YE++  +A+ L+SAIIYDRDF+YNFFGFK
Sbjct: 91  TKKNFSQVVKDLYEYINPKNGRAASMISKETYEVVQAHAETLDSAIIYDRDFHYNFFGFK 150



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+M YKDA NRKSNQ+NL  I+
Sbjct: 389 KLWYAILEAQIETGGPFMCYKDAANRKSNQKNLGTIK 425


>gi|121706584|ref|XP_001271554.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
 gi|119399702|gb|EAW10128.1| ribonucleotide reductase large subunit RNR1, putative [Aspergillus
           clavatus NRRL 1]
          Length = 859

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/466 (67%), Positives = 388/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY++YE EG+    + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYERYEKEGRGRSTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SNMRHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKKSNMRHRPIALGVNGLADAFLALRLPFDSPEARQLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL ASCE+A + GPY+TYEGSPVSQGILQYDMW  TPTDLWDW +LK KIA+ 
Sbjct: 533 FETIYHGALTASCELAKQLGPYETYEGSPVSQGILQYDMWDRTPTDLWDWDSLKAKIAQS 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+ +L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW +LK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDSLKAKIAQSGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQIVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ +L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRNILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYERYEKEG 378



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+GAL ASCE+A + GPY+TYEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSPEARQLNTQIFETIYHGALTASCELAKQLGPYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDSLKAKIAQSGVR 595



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEI+MK+AD LNSAI+YDRDFNYN+
Sbjct: 86  LHKQTKKQFSLVISDLYHYVNPKNNNPAPMISKETYEIVMKHADELNSAIVYDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|154297725|ref|XP_001549288.1| hypothetical protein BC1G_12274 [Botryotinia fuckeliana B05.10]
 gi|347829519|emb|CCD45216.1| similar to ribonucleoside-diphosphate reductase subunit large
           [Botryotinia fuckeliana]
          Length = 909

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/466 (67%), Positives = 388/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+ YE  GK  + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKAGKGRKTIKAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEY++ DEVA CNLASIAL  ++N  + TY+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYSAPDEVACCNLASIALPTFVNMNEGTYDFQKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VVVRNLNKIIDINYYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEAKHLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +S EIA   GPY+TY+GSPVS+G LQYDMWGVTPTDLWDW +LK+ I +H
Sbjct: 533 FETIYHAALTSSVEIAKELGPYETYQGSPVSKGELQYDMWGVTPTDLWDWDSLKQSIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQS+NI+
Sbjct: 653 SDNMKNRIIADGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSMNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW +LK+ I +HGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWDSLKQSIKQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQS+NI+M +    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAVYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+ YE  G
Sbjct: 353 PNECPGLADVYGDEFEALYESYEKAG 378



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+ AL +S EIA   GPY+TY+GSPV
Sbjct: 503 AVGVQGLADAFLALRLPFDSPEAKHLNIQIFETIYHAALTSSVEIAKELGPYETYQGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+G LQYDMWGVTPTDLWDW +LK     +G++
Sbjct: 563 SKGELQYDMWGVTPTDLWDWDSLKQSIKQHGVR 595



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GV   +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVNTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY   N   GT +PMIS + YE +M++ + LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSHVIRDLYQYTNPRNGTASPMISKQTYECVMRHEEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|452823074|gb|EME30087.1| ribonucleoside-diphosphate reductase alpha chain [Galdieria
           sulphuraria]
          Length = 813

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/474 (67%), Positives = 390/474 (82%), Gaps = 4/474 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFYGLW+PD FM+RVE D +WSL C
Sbjct: 294 RKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYGLWVPDLFMKRVEKDEKWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE F+ LY+KYE E +  + + ARKLWFAIL++QIETG PYMLYKD CN
Sbjct: 354 PNEAPGLADCWGEAFEQLYEKYEKEKRARQVIDARKLWFAILEAQIETGNPYMLYKDHCN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKLK 266
           RKSNQQNLGTI+CSNLCTEIV+YTS DEVAVCNLASIALN ++  ++ +    Y+F +L+
Sbjct: 414 RKSNQQNLGTIRCSNLCTEIVQYTSPDEVAVCNLASIALNQFVQFSEDSEEPYYDFEQLE 473

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            V KIVT+NLNKIID+N+YPV +A+ SN+RHRPIGIGVQGLAD FI MRLPF+ +E+R L
Sbjct: 474 HVTKIVTRNLNKIIDINYYPVTQAKTSNLRHRPIGIGVQGLADAFILMRLPFESDEARRL 533

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QI ETIYY A+  S E+A RDG Y+++ GSP+S+G+ Q+D+W V P+  +DW  L E 
Sbjct: 534 NIQIAETIYYAAMCTSLELAQRDGAYESFRGSPLSRGLFQFDLWQVKPSARYDWKTLGEA 593

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I + GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY+RRVL+GEF +VN HL+RDL  
Sbjct: 594 IQRDGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFTIVNQHLVRDLQR 653

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+++MK+++I  NGS+Q I  IPQ ++ LYKT+WE  QK +LDMAADRGAFIDQSQS
Sbjct: 654 LGLWNNDMKNKIIAYNGSVQHIPEIPQDIRQLYKTIWECSQKRLLDMAADRGAFIDQSQS 713

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM 560
           LN+Y+A  N  K+SSMHFHGWK GLKTGMYYLRT+PAA AI+FT+D+  ++ A+
Sbjct: 714 LNVYIASPNIGKLSSMHFHGWKKGLKTGMYYLRTRPAAEAIKFTVDQQYLSQAV 767



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/196 (66%), Positives = 162/196 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+  +DW  L E I + GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 572 FQFDLWQVKPSARYDWKTLGEAIQRDGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF +VN HL+RDL  LGLW+++MK+++I  NGS+Q I  IPQ ++ LYKT+WE
Sbjct: 632 TRRVLAGEFTIVNQHLVRDLQRLGLWNNDMKNKIIAYNGSVQHIPEIPQDIRQLYKTIWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
             QK +LDMAADRGAFIDQSQSLN+Y+A  N  K+SSMHFHGWK GLKTGMYYLRT+PAA
Sbjct: 692 CSQKRLLDMAADRGAFIDQSQSLNVYIASPNIGKLSSMHFHGWKKGLKTGMYYLRTRPAA 751

Query: 949 NAIQFTIDKTKMANAM 964
            AI+FT+D+  ++ A+
Sbjct: 752 EAIKFTVDQQYLSQAV 767



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFYGLW+PD FM+RVE D +WSL C
Sbjct: 294 RKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYGLWVPDLFMKRVEKDEKWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D WGE F+ LY+KYE E
Sbjct: 354 PNEAPGLADCWGEAFEQLYEKYEKE 378



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 62/82 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MRLPF+ +E+R LN QI ETIYY A+  S E+A RDG Y+++ GSP+S
Sbjct: 509 IGVQGLADAFILMRLPFESDEARRLNIQIAETIYYAAMCTSLELAQRDGAYESFRGSPLS 568

Query: 653 QGILQYDMWGVTPTDLWDWAAL 674
           +G+ Q+D+W V P+  +DW  L
Sbjct: 569 RGLFQFDLWQVKPSARYDWKTL 590



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWFAIL++QIETG PYMLYKD CNRKSNQQNL  I
Sbjct: 389 KLWFAILEAQIETGNPYMLYKDHCNRKSNQQNLGTI 424



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q +      GV+ ++L D AA +  A +      +++L S+I       L+K+    K
Sbjct: 40  VAQKVCTGVYNGVSTSELDDLAA-ETAAYMSTKHHDYSLLASRIAISN---LHKNTL--K 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S  + +++   LY+  + +T    P+I++  + IIMKNA  L+ AIIYDRDF+Y++FGFK
Sbjct: 94  SFSKTMDI---LYHYESPKTKAPAPLIAEDIHSIIMKNAHVLDDAIIYDRDFSYDYFGFK 150


>gi|328875304|gb|EGG23669.1| ribonucleotide reductase large subunit [Dictyostelium fasciculatum]
          Length = 942

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/468 (67%), Positives = 388/468 (82%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW+ D FM RVE +A+WSL C
Sbjct: 387 RKGAFAVYLEPWHSDIFEFLDLKKNHGKEEMRARDLFYALWVSDLFMERVEQNAEWSLFC 446

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GL+D +G+KF DLY  YE      R+V  A+ LWFAI+DSQIETGTPY+LYKDAC
Sbjct: 447 PNEAPGLADCYGDKFRDLYLSYEQTPGLARKVVKAQDLWFAIIDSQIETGTPYILYKDAC 506

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PADKTYNFTKL 265
           N KSNQ+NLGTI+CSNLCTEI++YTS DEVAVCNLASIAL  ++      A  +++   L
Sbjct: 507 NEKSNQKNLGTIQCSNLCTEIIQYTSADEVAVCNLASIALPKFVKRSSPSAVASFDHNHL 566

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            ++ +I+T+NLNKIID NFYPVEEAR SNMRHRP GIG+QGLAD+FI +R+PFD   + +
Sbjct: 567 AEITRIITRNLNKIIDRNFYPVEEARRSNMRHRPTGIGIQGLADVFIALRMPFDSPAAAV 626

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LNK+I ETIYY +L+ASC++A RDGPY+T+ GSP SQGILQ+DMW V P+  WDWAALK+
Sbjct: 627 LNKEIAETIYYASLDASCQLAERDGPYETFAGSPASQGILQFDMWDVQPSARWDWAALKQ 686

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSR+VL+GEF VVN  LL+DL+
Sbjct: 687 RIVKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQLLQDLM 746

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LGLW   MK+Q+I N GS+Q+++GIP  LK+LYK+ WEI Q+T++DMAADRGAFIDQSQ
Sbjct: 747 ALGLWTPEMKNQIIANRGSVQNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGAFIDQSQ 806

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           S N+++AE N+AK++SMHF+ WK GLKTGMYYLRT+ AA+AIQFT+D+
Sbjct: 807 SFNVFIAEPNFAKLTSMHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQ 854



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 135/212 (63%), Positives = 171/212 (80%), Gaps = 8/212 (3%)

Query: 754 SAIIYDRDFNYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 805
           S  + +RD  Y  F          ++DMW V P+  WDWAALK++I KHG+RNSLL+APM
Sbjct: 643 SCQLAERDGPYETFAGSPASQGILQFDMWDVQPSARWDWAALKQRIVKHGLRNSLLVAPM 702

Query: 806 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVN 865
           PTAST+QILGNNE FEPYTSNIYSR+VL+GEF VVN  LL+DL+ LGLW   MK+Q+I N
Sbjct: 703 PTASTSQILGNNECFEPYTSNIYSRKVLAGEFTVVNKQLLQDLMALGLWTPEMKNQIIAN 762

Query: 866 NGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSS 925
            GS+Q+++GIP  LK+LYK+ WEI Q+T++DMAADRGAFIDQSQS N+++AE N+AK++S
Sbjct: 763 RGSVQNVQGIPDDLKELYKSAWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPNFAKLTS 822

Query: 926 MHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
           MHF+ WK GLKTGMYYLRT+ AA+AIQFT+D+
Sbjct: 823 MHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQ 854



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 101/151 (66%), Gaps = 8/151 (5%)

Query: 585 RRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
           RR N   +   IG+QGLAD+FI +R+PFD   + +LNK+I ETIYY +L+ASC++A RDG
Sbjct: 592 RRSNMRHRPTGIGIQGLADVFIALRMPFDSPAAAVLNKEIAETIYYASLDASCQLAERDG 651

Query: 642 PYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPY 700
           PY+T+ GSP SQGILQ+DMW V P+  WDWAALK   + +GL+   ++L + + T  T  
Sbjct: 652 PYETFAGSPASQGILQFDMWDVQPSARWDWAALKQRIVKHGLR--NSLLVAPMPTASTSQ 709

Query: 701 MLYKDACNR--KSNQQNLEVIEELYNMVNKE 729
           +L  + C     SN  + +V+   + +VNK+
Sbjct: 710 ILGNNECFEPYTSNIYSRKVLAGEFTVVNKQ 740



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 66/83 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW+ D FM RVE +A+WSL C
Sbjct: 387 RKGAFAVYLEPWHSDIFEFLDLKKNHGKEEMRARDLFYALWVSDLFMERVEQNAEWSLFC 446

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN   GL+D +G+KF DLY  YE
Sbjct: 447 PNEAPGLADCYGDKFRDLYLSYE 469



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V    LWFAI+DSQIETGTPY+LYKDACN KSNQ+NL  I+
Sbjct: 478 VVKAQDLWFAIIDSQIETGTPYILYKDACNEKSNQKNLGTIQ 519



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 649 SPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACN 708
           S ++Q +      GV  T+L + AA +  A +      +A+L ++I             +
Sbjct: 131 SEITQKVASGVFPGVKTTELDNLAA-ETAAYMSTKHPDYAVLAARIAVSN--------LH 181

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG 768
           +++++  LE ++  +  V+ +TG   P++SD+   +  K+ DR+ +AI Y RDF Y+FFG
Sbjct: 182 KQTHESFLETVKLQHGYVSPKTGAPAPLVSDEILALANKHVDRIEAAIKYTRDFEYDFFG 241

Query: 769 FK 770
           FK
Sbjct: 242 FK 243


>gi|408394054|gb|EKJ73310.1| hypothetical protein FPSE_06575 [Fusarium pseudograminearum CS3096]
          Length = 895

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/466 (66%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE EGK  + + A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEREGKGRKSIKAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS++L  +IN  D  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLSLPSFINYEDACYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIIDVN YPV+EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNKIIDVNHYPVQEARNSNMRHRPIGLGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S ++A  +GPY T++GSP S+GILQ+DMW V P+DLWDW  L+E +  H
Sbjct: 533 FETIYHAALTTSVQLAKEEGPYSTFKGSPASEGILQFDMWNVKPSDLWDWEPLREDVKTH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I +NGSIQ+I  IP ++K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQENL 758



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW  L+E +  HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWNVKPSDLWDWEPLREDVKTHGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I +NGSIQ+I  IP ++K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPAEIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQENL 758



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVERNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEREG 378



 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL  S ++A  +GPY T++GSP S
Sbjct: 504 LGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTTSVQLAKEEGPYSTFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW  L+     +G++
Sbjct: 564 EGILQFDMWNVKPSDLWDWEPLREDVKTHGIR 595



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMIS + YE +M++ + L+SAI+YDRDFNYN+FGF+
Sbjct: 90  TKKQWSAVVSDLYHWVNPKNDRASPMISKETYECVMRHKEELDSAIVYDRDFNYNYFGFR 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|409078833|gb|EKM79195.1| hypothetical protein AGABI1DRAFT_58613 [Agaricus bisporus var.
           burnettii JB137-S8]
          Length = 868

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/469 (67%), Positives = 391/469 (83%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEARARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WG +F+ LY+KYE EG+  + +PA+KLW+AIL+SQIETG P+M+YKD  N
Sbjct: 354 PSEAPGLHEVWGPEFEALYEKYEKEGRQRKTMPAQKLWYAILESQIETGGPFMVYKDHAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY+S DE AVCNLAS+AL  +IN  +  Y+F KL +VAK
Sbjct: 414 SKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIN--NGKYDFQKLHEVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YP+ EAR SNMRHRPIGIGVQGLAD F+ +R+PFD  E++LLN QI
Sbjct: 472 VVAFNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADTFMALRMPFDSPEAKLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEAS E+A  +G Y+TYEGSPVSQG LQYD+WG+TPTDLWDW +LK++IA+ 
Sbjct: 532 FETIYHGALEASSEMAVSEGRYETYEGSPVSQGQLQYDLWGITPTDLWDWTSLKQQIART 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL++PMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LV L LW
Sbjct: 592 GIRNSLLVSPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVGLDLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK+ +I +NGS+Q+I  IP  +K +YKTVWEI QK VLD+AADRG FI QSQSLN++
Sbjct: 652 DDNMKNMIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVLDLAADRGPFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +  A
Sbjct: 712 LQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSVLNQA 760



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WG+TPTDLWDW +LK++IA+ G+RNSLL++PMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 LQYDLWGITPTDLWDWTSLKQQIARTGIRNSLLVSPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV L LWDDNMK+ +I +NGS+Q+I  IP  +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVGLDLWDDNMKNMIIAHNGSVQNIPNIPADVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRG FI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVLDLAADRGPFICQSQSLNVHLQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D++ +  A
Sbjct: 746 QAIQFTVDQSVLNQA 760



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEARARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WG +F+ LY+KYE EG
Sbjct: 354 PSEAPGLHEVWGPEFEALYEKYEKEG 379



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 72/83 (86%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD  E++LLN QIFETIY+GALEAS E+A  +G Y+TYEGSPVS
Sbjct: 503 IGVQGLADTFMALRMPFDSPEAKLLNIQIFETIYHGALEASSEMAVSEGRYETYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG LQYD+WG+TPTDLWDW +LK
Sbjct: 563 QGQLQYDLWGITPTDLWDWTSLK 585



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++Q    GVT  +L D  A +  A +      +A+L ++I       L+K+   +K
Sbjct: 40  VTQKVVQGVYQGVTTVEL-DNLASETAAYLTTKHPDYAVLAARIAISN---LHKET--KK 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +  Q   VI +LY+ +N + G    MIS + Y+++MK+AD LNSAIIY RDFNYN+FGFK
Sbjct: 94  TFSQ---VISDLYHYINPKNGKPAGMISKETYDVVMKHADTLNSAIIYTRDFNYNYFGFK 150



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL+SQIETG P+M+YKD  N KSNQ+NL  I+
Sbjct: 389 KLWYAILESQIETGGPFMVYKDHANSKSNQKNLGTIK 425


>gi|320582719|gb|EFW96936.1| Ribonucleoside-diphosphate reductase large chain 1 [Ogataea
           parapolymorpha DL-1]
          Length = 862

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/474 (66%), Positives = 395/474 (83%), Gaps = 2/474 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM RVE +A+W+L  
Sbjct: 293 RPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F +LY +YE EG+  + V A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLADVYGDEFKELYTRYEKEGRGRQTVKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            K+NQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  ++   D T  YNF KL  +
Sbjct: 413 SKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPAFVESDDNTSWYNFEKLHQI 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VTKNLNKIID N+YPV EAR SNMR+RPI +GVQGLAD+F+Q+RLPFD  E+R LN 
Sbjct: 473 TKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIAVGVQGLADVFMQLRLPFDSPEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GALEAS E+A RDG Y+T+EGSP SQGILQ+D+WG  PTDLWDW +LK +I 
Sbjct: 533 QIFETIYHGALEASAELAVRDGKYETFEGSPASQGILQFDLWGKKPTDLWDWDSLKARIQ 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV LG
Sbjct: 593 KDGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVNLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D+MK+ +I +NGS+Q++  +PQ+LKDLY+TVWEIPQK+++DMAADRGA+IDQSQS+N
Sbjct: 653 LWNDSMKNFIIKDNGSVQNLPNVPQELKDLYRTVWEIPQKSIIDMAADRGAYIDQSQSMN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           I++      K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D+   A A ++
Sbjct: 713 IHLKNPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDQKSAATASST 766



 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/272 (53%), Positives = 196/272 (72%), Gaps = 14/272 (5%)

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRL------NSAIIYDRDF 762
           R+SN +N  +   +  + +     R P  S +  E+ ++  + +       SA +  RD 
Sbjct: 495 RRSNMRNRPIAVGVQGLADVFMQLRLPFDSPEARELNIQIFETIYHGALEASAELAVRDG 554

Query: 763 NYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL 814
            Y  F          ++D+WG  PTDLWDW +LK +I K G+RNSLL+APMPTAST+QIL
Sbjct: 555 KYETFEGSPASQGILQFDLWGKKPTDLWDWDSLKARIQKDGLRNSLLVAPMPTASTSQIL 614

Query: 815 GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 874
           G NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV LGLW+D+MK+ +I +NGS+Q++  
Sbjct: 615 GYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVNLGLWNDSMKNFIIKDNGSVQNLPN 674

Query: 875 IPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLG 934
           +PQ+LKDLY+TVWEIPQK+++DMAADRGA+IDQSQS+NI++      K++SMHF+GWK G
Sbjct: 675 VPQELKDLYRTVWEIPQKSIIDMAADRGAYIDQSQSMNIHLKNPTMGKLTSMHFYGWKKG 734

Query: 935 LKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 966
           LKTGMYYLRT+ AA AIQFT+D+   A A ++
Sbjct: 735 LKTGMYYLRTQAAAAAIQFTVDQKSAATASST 766



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 77/97 (79%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD+F+Q+RLPFD  E+R LN QIFETIY+GALEAS E+A RDG Y+T+E
Sbjct: 501 NRPIAVGVQGLADVFMQLRLPFDSPEARELNIQIFETIYHGALEASAELAVRDGKYETFE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQGILQ+D+WG  PTDLWDW +LK      GL+
Sbjct: 561 GSPASQGILQFDLWGKKPTDLWDWDSLKARIQKDGLR 597



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM RVE +A+W+L  
Sbjct: 293 RPGAFALYVEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEQNAEWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F +LY +YE EG
Sbjct: 353 PSEAPGLADVYGDEFKELYTRYEKEG 378



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GVT  +L + AA +  A +  +   +A L ++I            
Sbjct: 35  EPVAITQRVISGVYHGVTTIELDNLAA-ETAAYMTTIHPDYATLAARIAISN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V+++LY+ +N + G  +PMISD+ Y I+ ++AD LNSAI+YDRDF+YN+
Sbjct: 86  LHKQTTKQFSQVVDQLYHYINPKNGKPSPMISDETYRIVQEHADELNSAIVYDRDFSYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 35/41 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++Q ETGTP+MLYKDACN K+NQ+NL +I+
Sbjct: 384 VKAQKLWYAILEAQTETGTPFMLYKDACNSKTNQKNLGIIK 424


>gi|213409966|ref|XP_002175753.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
 gi|212003800|gb|EEB09460.1| ribonucleoside-diphosphate reductase large chain
           [Schizosaccharomyces japonicus yFS275]
          Length = 824

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/462 (69%), Positives = 395/462 (85%), Gaps = 2/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA YLEPWH D+ DF+EL+K  GKEE RAR+LFY LWIPD FMRRVE + QWS  C
Sbjct: 293 RPGAFAAYLEPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWSFFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F++LY++YE EG+  R +PA+K+W+ I+ +Q ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGEEFEELYERYEREGRARRVLPAQKVWYEIIRAQSETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLCTEIVEY+S DEVAVCNLASIAL M+I+  D  Y+F +L +VAK
Sbjct: 413 RKSNQKNLGTIRCSNLCTEIVEYSSPDEVAVCNLASIALPMFIH--DGKYDFQQLHNVAK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN++IDVN+YPV EAR SN+RHRP+G+GVQGLAD F ++R P++  E+R LN  I
Sbjct: 471 VVTRNLNRVIDVNYYPVPEARRSNLRHRPVGLGVQGLADAFFKLRYPYESPEARKLNLLI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+AA +GPY+TYEGSP SQGILQYDMW VTPTDLWDWA+LK KIAKH
Sbjct: 531 FETIYHAALEASCELAAEEGPYETYEGSPASQGILQYDMWNVTPTDLWDWASLKAKIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN  LLRDLV+LGLW
Sbjct: 591 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLRDLVDLGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+ MK++L++ +GSIQ I  IPQ LK+LYKTVWEI Q+TV+D AADRGAFIDQSQSLNI+
Sbjct: 651 DEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWEISQRTVIDYAADRGAFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           + + ++ K++SMHF+GWK GLKTGMYYLRT  A+ AI+FT+D
Sbjct: 711 IKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVD 752



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/188 (72%), Positives = 165/188 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDWA+LK KIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 565 LQYDMWNVTPTDLWDWASLKAKIAKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNMY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN  LLRDLV+LGLWD+ MK++L++ +GSIQ I  IPQ LK+LYKTVWE
Sbjct: 625 QRRVLSGEFQIVNPWLLRDLVDLGLWDEEMKNKLVLYDGSIQAIPEIPQDLKNLYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+TV+D AADRGAFIDQSQSLNI++ + ++ K++SMHF+GWK GLKTGMYYLRT  A+
Sbjct: 685 ISQRTVIDYAADRGAFIDQSQSLNIHIKDPSFGKITSMHFYGWKKGLKTGMYYLRTMAAS 744

Query: 949 NAIQFTID 956
            AI+FT+D
Sbjct: 745 AAIKFTVD 752



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F ++R P++  E+R LN  IFETIY+ ALEASCE+AA +GPY+TYEGSP S
Sbjct: 502 LGVQGLADAFFKLRYPYESPEARKLNLLIFETIYHAALEASCELAAEEGPYETYEGSPAS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW VTPTDLWDWA+LK     +GL+
Sbjct: 562 QGILQYDMWNVTPTDLWDWASLKAKIAKHGLR 593



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 59/75 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA YLEPWH D+ DF+EL+K  GKEE RAR+LFY LWIPD FMRRVE + QWS  C
Sbjct: 293 RPGAFAAYLEPWHPDVLDFVELRKTHGKEEMRARELFYALWIPDLFMRRVEKNEQWSFFC 352

Query: 61  PNACRGLSDSWGEKF 75
           PN   GL+D WGE+F
Sbjct: 353 PNEAPGLADVWGEEF 367



 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 57/84 (67%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL ++I             ++++++    V+++L++ VN +TG   PMISD+ YEI+M
Sbjct: 74  YAILAARIAVSN--------LHKQTDKAFSSVVQKLHDWVNPKTGKHAPMISDEVYEIVM 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K+ D L+SAIIYDRDF YN+FGFK
Sbjct: 126 KHKDELDSAIIYDRDFTYNYFGFK 149



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           K+W+ I+ +Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 388 KVWYEIIRAQSETGNPFMLYKDSCNRKSNQKNLGTI 423


>gi|406863487|gb|EKD16534.1| ribonucleotide reductase large subunit [Marssonina brunnea f. sp.
           'multigermtubi' MB_m1]
          Length = 902

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 387/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY++YE EGK  + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADVYGEEFEALYEQYEKEGKGRKTIKAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEIVEY + DEVAVCNLAS+AL  Y++    +YNF KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIVEYCAPDEVAVCNLASLALPTYVDQVSGSYNFQKLHEVCQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V KNLNKIID+N+YPV EAR SN RHRPI +GVQGLAD+F+ +RLPF+  E++ LN QI
Sbjct: 473 VVVKNLNKIIDINYYPVPEARKSNFRHRPIAVGVQGLADVFLALRLPFESPEAKQLNLQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  S E+A   G Y+TYEGSP S+G LQYDMW VTPTDLWDW +LK++I +H
Sbjct: 533 FETIYHAALTGSVELAKLHGTYETYEGSPASKGELQYDMWNVTPTDLWDWDSLKQQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+T++ MAADRGA+IDQSQS+NI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAYIDQSQSMNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+  +
Sbjct: 713 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQEAL 758



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK++I +HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTDLWDWDSLKQQIKQHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV++GLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGA+IDQSQS+NI+M +    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRTIVQMAADRGAYIDQSQSMNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 74/86 (86%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY++YE EG
Sbjct: 353 PNECPGLADVYGEEFEALYEQYEKEG 378



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD+F+ +RLPF+  E++ LN QIFETIY+ AL  S E+A   G Y+TYEGSP 
Sbjct: 503 AVGVQGLADVFLALRLPFESPEAKQLNLQIFETIYHAALTGSVELAKLHGTYETYEGSPA 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+G LQYDMW VTPTDLWDW +LK     +GL+
Sbjct: 563 SKGELQYDMWNVTPTDLWDWDSLKQQIKQHGLR 595



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN    + +PMIS   YE +MK+   LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSTVISDLYHYVNPRNKSASPMISQATYECVMKHEAELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|83769274|dbj|BAE59411.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 794

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/514 (63%), Positives = 404/514 (78%), Gaps = 19/514 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYERYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+NSNMRHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS ++A   G Y++YEGSPVSQGILQYDMW  TPTDLWDW ALK KIA+ 
Sbjct: 533 FETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTPTDLWDWDALKAKIAQT 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+++L MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK-------TKMANAMASK 563
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+       T +A A AS 
Sbjct: 713 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANASF 772

Query: 564 DARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
             R++             + C  +NKE C+  QG
Sbjct: 773 RKRAK------------VLQCSIENKEACLMCQG 794



 Score =  293 bits (749), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 143/229 (62%), Positives = 175/229 (76%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+++L MAADRGA+IDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRSILQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
             IQFT+D+     A+   DT       + +++A   + C  +NKE CL
Sbjct: 747 APIQFTVDQ----EALKVADTNVARANASFRKRA-KVLQCSIENKEACL 790



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYERYEKEG 378



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS ++A   G Y++YEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW ALK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDALKAKIAQTGVR 595



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTTTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ +N +     PMIS + YEI+MK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYINPKNKKPAPMISKETYEIVMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|447146|prf||1913428A ribonucleotide reductase:SUBUNIT=large
          Length = 811

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/480 (67%), Positives = 390/480 (81%), Gaps = 6/480 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR +FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F  LY+KYE E +  R +PA+K+W+AIL SQ+ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+GTI+ SNLCTEIVEY+S DEVAVCNLAS+AL  +I   D  YNF KL DV K
Sbjct: 413 RKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIK--DGKYNFQKLHDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YPV EAR SNMRHRP+G+GVQGLAD F  +RLPF+   ++ LN QI
Sbjct: 471 VVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIA  +G Y++YEGSP  QGILQYDMW V PTDLWDWA  KEKIAKH
Sbjct: 531 FETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWNVNPTDLWDWAEFKEKIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN  LL+DLVE  LW
Sbjct: 591 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK++L++ +GSIQ I  IPQ LKDLYKTVWEI QKTV+D AADRG FIDQSQSLNI+
Sbjct: 651 NEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + + +Y K++SMHF+GWK GLKTGMYYLRT  A+ AI+FT+D      A+ +++  S EE
Sbjct: 711 LKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV----ALRARNEESNEE 766



 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 169/206 (82%), Gaps = 4/206 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDWA  KEKIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 565 LQYDMWNVNPTDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN  LL+DLVE  LW+++MK++L++ +GSIQ I  IPQ LKDLYKTVWE
Sbjct: 625 QRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+D AADRG FIDQSQSLNI++ + +Y K++SMHF+GWK GLKTGMYYLRT  A+
Sbjct: 685 ISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAAS 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEE 974
            AI+FT+D      A+ +++  S EE
Sbjct: 745 AAIKFTVDPV----ALRARNEESNEE 766



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR +FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D WG++F  LY+KYE E
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKE 377



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F  +RLPF+   ++ LN QIFETIY+ ALEASCEIA  +G Y++YEGSP  
Sbjct: 502 LGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCI 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDWA  K     +G++
Sbjct: 562 QGILQYDMWNVNPTDLWDWAEFKEKIAKHGIR 593



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++L++ VN +T    PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFK
Sbjct: 97  VVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           K+W+AIL SQ+ETG P+MLYKD+CNRKSNQ+N+  I
Sbjct: 388 KVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423


>gi|297447|emb|CAA46232.1| ribonucleotide reductase, large subunit [Schizosaccharomyces pombe]
          Length = 811

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/480 (67%), Positives = 390/480 (81%), Gaps = 6/480 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR +FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F  LY+KYE E +  R +PA+K+W+AIL SQ+ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+GTI+ SNLCTEIVEY+S DEVAVCNLAS+AL  +I   D  YNF KL DV K
Sbjct: 413 RKSNQKNVGTIRSSNLCTEIVEYSSPDEVAVCNLASVALPTFIK--DGKYNFQKLHDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIIDVN+YPV EAR SNMRHRP+G+GVQGLAD F  +RLPF+   ++ LN QI
Sbjct: 471 VVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCEIA  +G Y++YEGSP  QGILQYDMW V PTDLWDWA  KEKIAKH
Sbjct: 531 FETIYHAALEASCEIAQVEGTYESYEGSPCIQGILQYDMWNVNPTDLWDWAEFKEKIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN  LL+DLVE  LW
Sbjct: 591 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +++MK++L++ +GSIQ I  IPQ LKDLYKTVWEI QKTV+D AADRG FIDQSQSLNI+
Sbjct: 651 NEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIH 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + + +Y K++SMHF+GWK GLKTGMYYLRT  A+ AI+FT+D      A+ +++  S EE
Sbjct: 711 LKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV----ALRARNEESNEE 766



 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 139/206 (67%), Positives = 169/206 (82%), Gaps = 4/206 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDWA  KEKIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 565 LQYDMWNVNPTDLWDWAEFKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN  LL+DLVE  LW+++MK++L++ +GSIQ I  IPQ LKDLYKTVWE
Sbjct: 625 QRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTV+D AADRG FIDQSQSLNI++ + +Y K++SMHF+GWK GLKTGMYYLRT  A+
Sbjct: 685 ISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAAS 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEE 974
            AI+FT+D      A+ +++  S EE
Sbjct: 745 AAIKFTVDPV----ALRARNEESNEE 766



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA YLEPWH D+ DFLEL+K  G E+FRAR +FY LWIPD FM+RVE + QW+  C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRARQMFYALWIPDLFMQRVERNEQWTFFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D WG++F  LY+KYE E
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKE 377



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F  +RLPF+   ++ LN QIFETIY+ ALEASCEIA  +G Y++YEGSP  
Sbjct: 502 LGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPCI 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDWA  K     +G++
Sbjct: 562 QGILQYDMWNVNPTDLWDWAEFKEKIAKHGIR 593



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           V+++L++ VN +T    PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFK
Sbjct: 97  VVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           K+W+AIL SQ+ETG P+MLYKD+CNRKSNQ+N+  I
Sbjct: 388 KVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423


>gi|426195743|gb|EKV45672.1| hypothetical protein AGABI2DRAFT_223838 [Agaricus bisporus var.
           bisporus H97]
          Length = 868

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/469 (67%), Positives = 390/469 (83%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEARARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WG +F+ LY+KYE EG+  + +PA+KLW+AIL+SQIETG P+M+YKD  N
Sbjct: 354 PSEAPGLHEVWGPEFEALYEKYEKEGRQRKTMPAQKLWYAILESQIETGGPFMVYKDHAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY+S DE AVCNLAS+AL  +IN  +  Y+F KL +VAK
Sbjct: 414 SKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIN--NGKYDFQKLHEVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +   NLN+IIDVN+YP+ EAR SNMRHRPIGIGVQGLAD F+ +R+PFD  E++LLN QI
Sbjct: 472 VAAFNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADTFMALRMPFDSPEAKLLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEAS E+A  +G Y+TYEGSPVSQG LQYD+WG+TPTDLWDW +LK++IA+ 
Sbjct: 532 FETIYHGALEASSEMAVSEGRYETYEGSPVSQGQLQYDLWGITPTDLWDWTSLKQQIART 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL++PMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LV L LW
Sbjct: 592 GIRNSLLVSPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVGLDLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK+ +I +NGS+Q+I  IP  +K +YKTVWEI QK VLD+AADRG FI QSQSLN++
Sbjct: 652 DDNMKNMIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVLDLAADRGPFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +  A
Sbjct: 712 LQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSVLNQA 760



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WG+TPTDLWDW +LK++IA+ G+RNSLL++PMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 LQYDLWGITPTDLWDWTSLKQQIARTGIRNSLLVSPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV L LWDDNMK+ +I +NGS+Q+I  IP  +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVGLDLWDDNMKNMIIAHNGSVQNIPNIPADVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRG FI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVLDLAADRGPFICQSQSLNVHLQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D++ +  A
Sbjct: 746 QAIQFTVDQSVLNQA 760



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEARARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WG +F+ LY+KYE EG
Sbjct: 354 PSEAPGLHEVWGPEFEALYEKYEKEG 379



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 72/83 (86%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD  E++LLN QIFETIY+GALEAS E+A  +G Y+TYEGSPVS
Sbjct: 503 IGVQGLADTFMALRMPFDSPEAKLLNIQIFETIYHGALEASSEMAVSEGRYETYEGSPVS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG LQYD+WG+TPTDLWDW +LK
Sbjct: 563 QGQLQYDLWGITPTDLWDWTSLK 585



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++Q    GVT  +L D  A +  A +      +A+L ++I       L+K+   +K
Sbjct: 40  VTQKVVQGVYQGVTTVEL-DNLASETAAYLTTKHPDYAVLAARIAISN---LHKET--KK 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +  Q   VI +LY+ +N + G    MIS + Y+++MK+AD LNSAIIY RDFNYN+FGFK
Sbjct: 94  TFSQ---VISDLYHYINPKNGKPAGMISKETYDVVMKHADTLNSAIIYTRDFNYNYFGFK 150



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL+SQIETG P+M+YKD  N KSNQ+NL  I+
Sbjct: 389 KLWYAILESQIETGGPFMVYKDHANSKSNQKNLGTIK 425


>gi|374288409|ref|YP_005035494.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
           [Bacteriovorax marinus SJ]
 gi|301166950|emb|CBW26529.1| putative ribonucleoside-diphosphate reductase 1 subunit alpha
           [Bacteriovorax marinus SJ]
          Length = 785

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/504 (63%), Positives = 399/504 (79%), Gaps = 16/504 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFDFLE+KKNTGK+E RARDLFY LWI D FM+RVE+D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C G+++++G +F+ LY KYE+EGK  + V A+ LWFA+L+SQIETG+PYMLYKD+ N
Sbjct: 353 PHECPGMAETYGAEFEALYTKYESEGKAKKVVRAQDLWFAVLESQIETGSPYMLYKDSIN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EYT+ DEVAVCNLASIALNM+++ A KTY+  KL DV  
Sbjct: 413 EKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASIALNMFVDEATKTYDHKKLYDVVY 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLN+IID+N+YPV EA+NSNMRHRPIG+GVQGLAD F +MR  F+  E+  LN QI
Sbjct: 473 RATLNLNRIIDINYYPVPEAKNSNMRHRPIGLGVQGLADTFFKMRYDFESPEALELNNQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WDWAALKEKIAK 389
           FETIY+ AL AS ++A +DG Y+TYEGSP+SQG  Q+DMWGVTP+   WDW+AL++++A+
Sbjct: 533 FETIYFAALSASKDLAMKDGAYETYEGSPMSQGQFQFDMWGVTPSAKNWDWSALRKEVAE 592

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+APMPTAST+QILGNNE FEP TSNIY RRVLSGEF VVN  L+ DL+  GL
Sbjct: 593 HGVRNSLLVAPMPTASTSQILGNNECFEPITSNIYVRRVLSGEFAVVNKFLVNDLIRAGL 652

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD M++++I NNGSIQ IE IP++LK LYKTVWEI QKTV++M+A R  +IDQ QSLNI
Sbjct: 653 WDDKMRNEIIANNGSIQAIERIPEELKGLYKTVWEISQKTVINMSAGRAPYIDQGQSLNI 712

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M E N+ K+SSMHF+ WK GLKTGMYYLR + A NA+QFT+                 +
Sbjct: 713 HMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAAVNAVQFTV---------------KND 757

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
             + ++E A AAM+C  +N +DC+
Sbjct: 758 TPKVNKEDAQAAMVCSIENPDDCV 781



 Score =  295 bits (756), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 137/230 (59%), Positives = 175/230 (76%), Gaps = 16/230 (6%)

Query: 769 FKYDMWGVTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP+   WDW+AL++++A+HGVRNSLL+APMPTAST+QILGNNE FEP TSNI
Sbjct: 567 FQFDMWGVTPSAKNWDWSALRKEVAEHGVRNSLLVAPMPTASTSQILGNNECFEPITSNI 626

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN  L+ DL+  GLWDD M++++I NNGSIQ IE IP++LK LYKTVW
Sbjct: 627 YVRRVLSGEFAVVNKFLVNDLIRAGLWDDKMRNEIIANNGSIQAIERIPEELKGLYKTVW 686

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKTV++M+A R  +IDQ QSLNI+M E N+ K+SSMHF+ WK GLKTGMYYLR + A
Sbjct: 687 EISQKTVINMSAGRAPYIDQGQSLNIHMQEPNFGKLSSMHFYAWKAGLKTGMYYLRARAA 746

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            NA+QFT+                 +  + ++E A AAM+C  +N +DC+
Sbjct: 747 VNAVQFTV---------------KNDTPKVNKEDAQAAMVCSIENPDDCV 781



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFDFLE+KKNTGK+E RARDLFY LWI D FM+RVE+D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLEMKKNTGKDENRARDLFYALWISDLFMKRVEADGMWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C G+++++G +F+ LY KYE+EG
Sbjct: 353 PHECPGMAETYGAEFEALYTKYESEG 378



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F +MR  F+  E+  LN QIFETIY+ AL AS ++A +DG Y+TYEGSP+S
Sbjct: 504 LGVQGLADTFFKMRYDFESPEALELNNQIFETIYFAALSASKDLAMKDGAYETYEGSPMS 563

Query: 653 QGILQYDMWGVTPTDL-WDWAALKVLALVYGLK 684
           QG  Q+DMWGVTP+   WDW+AL+     +G++
Sbjct: 564 QGQFQFDMWGVTPSAKNWDWSALRKEVAEHGVR 596



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+E+YN VN  TG   P+IS + YE++M+NA+ L++A+   RDFNY++FGFK
Sbjct: 96  ENIKEMYNYVNPATGEMAPLISKELYEVVMENAEMLDTAVDDKRDFNYDYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWFA+L+SQIETG+PYMLYKD+ N KSNQ+NL  I+
Sbjct: 379 KAKKVVRAQDLWFAVLESQIETGSPYMLYKDSINEKSNQKNLGTIK 424


>gi|379729067|ref|YP_005321263.1| ribonucleoside-diphosphate reductase subunit alpha [Saprospira
           grandis str. Lewin]
 gi|378574678|gb|AFC23679.1| ribonucleoside-diphosphate reductase, alpha subunit [Saprospira
           grandis str. Lewin]
          Length = 803

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/508 (61%), Positives = 401/508 (78%), Gaps = 6/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RVE DA+W+LMC
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMQRVEQDAEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL DS+GE+F+  Y  +EAEGK  + + AR+LW  IL+SQIETGTPYMLYKD  N
Sbjct: 353 PNECPGLYDSYGEEFEKRYLAFEAEGKGRQTIKARELWMKILESQIETGTPYMLYKDHAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLG I+ SNLCTEI+EY+S DEVAVCNLASIAL+ ++   D  Y+F +L +V +
Sbjct: 413 RKSNQKNLGVIRSSNLCTEIMEYSSPDEVAVCNLASIALSKFVT-EDGQYDFQRLYEVTR 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID+N+YP++EA+NSNMRHRP+GIGVQGLAD F+ MRLPF+   +R LN+ I
Sbjct: 472 IVTRNLNKVIDINYYPIQEAKNSNMRHRPVGIGVQGLADAFLMMRLPFESEAARQLNRDI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+  SC++A  +GPY TYEGSP+SQG  Q+D+W VTP+D WDW AL+++I  H
Sbjct: 532 FETIYFAAMSESCQMAKEEGPYSTYEGSPISQGKFQFDLWDVTPSDRWDWEALRQEILAH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR LSGE+ VVN HLL+DL+E G W
Sbjct: 592 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRTLSGEYVVVNKHLLKDLIERGYW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K+ LI  NGS+Q+IEG+PQ++K+LYKT +EI Q+ ++DM+ADRGAFI QSQSLN++
Sbjct: 652 TQELKEMLIAANGSVQNIEGLPQEIKELYKTAYEIKQRAIIDMSADRGAFICQSQSLNLF 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-----KTKMANAMASKDA 565
           +   N+AK++SMHFH WK GLKTGMYYLR+K A + I+FT+      K    N  +++  
Sbjct: 712 VESPNFAKLTSMHFHAWKRGLKTGMYYLRSKAAVDPIKFTLSAKYQQKFVGQNGGSNQAL 771

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCI 593
             +   Q ++  +   + C  DN +DC+
Sbjct: 772 AGRTAAQIEEANSQEGVACSIDNPDDCL 799



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/234 (56%), Positives = 176/234 (75%), Gaps = 5/234 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W VTP+D WDW AL+++I  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 FQFDLWDVTPSDRWDWEALRQEILAHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR LSGE+ VVN HLL+DL+E G W   +K+ LI  NGS+Q+IEG+PQ++K+LYKT +E
Sbjct: 626 SRRTLSGEYVVVNKHLLKDLIERGYWTQELKEMLIAANGSVQNIEGLPQEIKELYKTAYE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DM+ADRGAFI QSQSLN+++   N+AK++SMHFH WK GLKTGMYYLR+K A 
Sbjct: 686 IKQRAIIDMSADRGAFICQSQSLNLFVESPNFAKLTSMHFHAWKRGLKTGMYYLRSKAAV 745

Query: 949 NAIQFTID-----KTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           + I+FT+      K    N  +++    +   Q ++  +   + C  DN +DCL
Sbjct: 746 DPIKFTLSAKYQQKFVGQNGGSNQALAGRTAAQIEEANSQEGVACSIDNPDDCL 799



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RVE DA+W+LMC
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMQRVEQDAEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL DS+GE+F+  Y  +EAEG
Sbjct: 353 PNECPGLYDSYGEEFEKRYLAFEAEG 378



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MRLPF+   +R LN+ IFETIY+ A+  SC++A  +GPY TYEGSP+S
Sbjct: 503 IGVQGLADAFLMMRLPFESEAARQLNRDIFETIYFAAMSESCQMAKEEGPYSTYEGSPIS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG  Q+D+W VTP+D WDW AL+   L +G++
Sbjct: 563 QGKFQFDLWDVTPSDRWDWEALRQEILAHGVR 594



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKD  NRKSNQ+NL VI
Sbjct: 388 ELWMKILESQIETGTPYMLYKDHANRKSNQKNLGVI 423



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GV+ T++ D  A +  A +      +AIL ++I       L+K + N  +     E +  
Sbjct: 50  GVS-TEVLDKLAAETAASMATEHPDYAILAARISVSD---LHKGSSNSFT-----ETMRR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+  ++ +TG    MI+D    ++ K++++L++AI+++RD++Y+FFGFK
Sbjct: 101 LHQYIDPKTGENAQMIADDFMALVEKHSEQLDAAIVHERDYDYDFFGFK 149


>gi|431797144|ref|YP_007224048.1| ribonucleoside-diphosphate reductase subunit alpha [Echinicola
           vietnamensis DSM 17526]
 gi|430787909|gb|AGA78038.1| ribonucleoside-diphosphate reductase, alpha subunit [Echinicola
           vietnamensis DSM 17526]
          Length = 799

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/506 (64%), Positives = 405/506 (80%), Gaps = 8/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI DFLELKKN GKEE RARDLFY LWI D FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLELKKNHGKEELRARDLFYALWISDLFMKRVEANEEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLS+  GE+F+ LY+KYE EG+    V A++LWF +L+SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLSECHGEEFEKLYEKYEKEGRARETVKAQELWFEVLESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
            KSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  +I   +   K+++  KL +
Sbjct: 413 GKSNQKNLGTIKSSNLCTEIMEYTSPDEVAVCNLASIALPKFIKTDSQGKKSFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+VTKNLN++ID+N+YPV+EA  SN RHRPIGIGVQGLAD FI +R+PFD  E+  LN
Sbjct: 473 ITKVVTKNLNRVIDINYYPVKEAEKSNFRHRPIGIGVQGLADAFIMLRMPFDSAEAAGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIYY A+E S E+A   G Y+TYEGSPVSQG  Q+D+WGVTP +  W+WA LKE+
Sbjct: 533 EDIFETIYYAAMETSMELAKVHGTYETYEGSPVSQGQFQFDLWGVTPKSGRWNWADLKER 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +AK GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL++DL+ 
Sbjct: 593 VAKFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMKDLIR 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D+MK++LI  NGS+QD+  +PQ +KDLYKTVWEI QK V++MAADRGA+I QSQS
Sbjct: 653 LGLWNDSMKNRLIAANGSVQDMPEVPQNIKDLYKTVWEISQKVVINMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N++M E N+ K++SMHF+ WK GLKTGMYYLR+K A +AIQFT+DK  + N+  +  A 
Sbjct: 713 MNVFMQEPNFGKLTSMHFYAWKKGLKTGMYYLRSKAATSAIQFTVDKESLKNSQQAT-AA 771

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
           ++E  +A+ + A+A   C  DN +DC
Sbjct: 772 TEEPNKANSQDAIA---CSLDNPDDC 794



 Score =  306 bits (784), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 185/229 (80%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+WGVTP +  W+WA LKE++AK GVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDLWGVTPKSGRWNWADLKERVAKFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL+ LGLW+D+MK++LI  NGS+QD+  +PQ +KDLYKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMKDLIRLGLWNDSMKNRLIAANGSVQDMPEVPQNIKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK V++MAADRGA+I QSQS+N++M E N+ K++SMHF+ WK GLKTGMYYLR+K A
Sbjct: 690 EISQKVVINMAADRGAYICQSQSMNVFMQEPNFGKLTSMHFYAWKKGLKTGMYYLRSKAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            +AIQFT+DK  + N+  +    ++E  +A+ + A+A   C  DN +DC
Sbjct: 750 TSAIQFTVDKESLKNSQQAT-AATEEPNKANSQDAIA---CSLDNPDDC 794



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI DFLELKKN GKEE RARDLFY LWI D FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLELKKNHGKEELRARDLFYALWISDLFMKRVEANEEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GLS+  GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLSECHGEEFEKLYEKYEKEG 378



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +R+PFD  E+  LN+ IFETIYY A+E S E+A   G Y+TYEGSPVS
Sbjct: 507 IGVQGLADAFIMLRMPFDSAEAAGLNEDIFETIYYAAMETSMELAKVHGTYETYEGSPVS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QG  Q+D+WGVTP +  W+WA LK     +G++
Sbjct: 567 QGQFQFDLWGVTPKSGRWNWADLKERVAKFGVR 599



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF +L+SQIETGTPYMLYKDA N KSNQ+NL  I+
Sbjct: 384 VKAQELWFEVLESQIETGTPYMLYKDAANGKSNQKNLGTIK 424



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTSELDNLAA-EVCASMTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN +TG    +I+   Y I+ K+A RL+  I Y RDFNY+FFGFK
Sbjct: 101 LYTYVNPKTGDNAALIAPDVYGIVKKHAARLDEIIDYSRDFNYDFFGFK 149


>gi|393229615|gb|EJD37235.1| hypothetical protein AURDEDRAFT_147076 [Auricularia delicata
           TFB-10046 SS5]
          Length = 860

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/466 (68%), Positives = 387/466 (83%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 304 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGEWSLFC 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL +    +F+ LY++YE EG+  + +PA+KLW+AIL++QIETG P+MLYKDA N
Sbjct: 364 PNEAPGLHEVHSAEFEALYERYEKEGRARKTIPAQKLWYAILEAQIETGGPFMLYKDAAN 423

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY+S DE AVCNLASIAL  +I  ++  Y+F KL D+AK
Sbjct: 424 AKSNQQNLGTIKSSNLCTEIIEYSSPDETAVCNLASIALPSFI--SNGKYDFQKLHDIAK 481

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV  NLN+IIDVN+YPV EAR SNMRHRPIGIGVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 482 IVAFNLNRIIDVNYYPVPEARRSNMRHRPIGIGVQGLADAFMALRLPFDGPEARKLNLQI 541

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS E+A  DGPY+T+EGSP  QG LQYD+WGVTPTDLWDWA+LKE+IA+ 
Sbjct: 542 FETIYHAALEASSEMAEADGPYETWEGSPAQQGKLQYDLWGVTPTDLWDWASLKERIART 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTA T+QILG NE FEPYTSNIY+RRVL+GEFQ+V   LL++LV LGLW
Sbjct: 602 GLRNSLLLAPMPTAGTSQILGFNECFEPYTSNIYTRRVLAGEFQIVCPWLLKELVALGLW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+ +I N GS+Q+I GIP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 662 DDRMKNMIIANGGSVQNIPGIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 721

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +
Sbjct: 722 LQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSVL 767



 Score =  292 bits (748), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 163/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPTDLWDWA+LKE+IA+ G+RNSLL+APMPTA T+QILG NE FEPYTSNIY
Sbjct: 576 LQYDLWGVTPTDLWDWASLKERIARTGLRNSLLLAPMPTAGTSQILGFNECFEPYTSNIY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+V   LL++LV LGLWDD MK+ +I N GS+Q+I GIP  +K +YKTVWE
Sbjct: 636 TRRVLAGEFQIVCPWLLKELVALGLWDDRMKNMIIANGGSVQNIPGIPDDVKAIYKTVWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 696 ISQKKVLDLAADRGAFICQSQSLNVHLQSPTTGQLTSMHFYGWKKGLKTGMYYLRTRPAA 755

Query: 949 NAIQFTIDKTKM 960
            AIQFT+D++ +
Sbjct: 756 QAIQFTVDQSVL 767



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 85/127 (66%), Gaps = 4/127 (3%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   IGVQGLAD F+ +RLPFD  E+R LN QIFETIY+ ALEAS E+A  D
Sbjct: 501 ARRSNMRHRPIGIGVQGLADAFMALRLPFDGPEARKLNLQIFETIYHAALEASSEMAEAD 560

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           GPY+T+EGSP  QG LQYD+WGVTPTDLWDWA+LK      GL+    +L      GT  
Sbjct: 561 GPYETWEGSPAQQGKLQYDLWGVTPTDLWDWASLKERIARTGLRNSL-LLAPMPTAGTSQ 619

Query: 701 MLYKDAC 707
           +L  + C
Sbjct: 620 ILGFNEC 626



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++ +WSL C
Sbjct: 304 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGEWSLFC 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL +    +F+ LY++YE EG
Sbjct: 364 PNEAPGLHEVHSAEFEALYERYEKEG 389



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT  +L + AA +  A +      +AIL ++I             +++
Sbjct: 54  VISGVYQ----GVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN--------LHKE 100

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +VIE+LY  VN + G    +IS++ Y+++ +NA+ L+SAIIYDRDFNY +FGFK
Sbjct: 101 TKKNFSQVIEDLYRYVNPKNGKAAGLISEETYQVVKENAELLDSAIIYDRDFNYQYFGFK 160



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+MLYKDA N KSNQQNL  I+
Sbjct: 399 KLWYAILEAQIETGGPFMLYKDAANAKSNQQNLGTIK 435


>gi|302915563|ref|XP_003051592.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732531|gb|EEU45879.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 893

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/475 (66%), Positives = 393/475 (82%), Gaps = 2/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 298 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY+KYE  GK  + + A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 358 PNECPGLADCYGEEFEALYEKYEKAGKGRKTMKAQKLWYAILEAQTETGNPFMLYKDHCN 417

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +IN  +  Y+F KL +V +
Sbjct: 418 RKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPSFINYDEACYDFQKLHEVTQ 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V +NLN+IIDVN YPV EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 478 TVVRNLNRIIDVNHYPVPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS ++A  +GPY T++GSP S+GILQ+DMW V P+DLWDW +L+E++ +H
Sbjct: 538 FETIYHAALTASVQLAKEEGPYSTFKGSPASEGILQFDMWNVKPSDLWDWESLREQVKEH 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 598 GTRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+++I  NGSIQ+I  IP ++K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 658 SDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWEISQRQVVQMAADRGAFIDQSQSLNIH 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASK 563
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+   K+A+A +++
Sbjct: 718 MKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQQALKVADANSAQ 772



 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/201 (66%), Positives = 168/201 (83%), Gaps = 2/201 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLWDW +L+E++ +HG RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 572 LQFDMWNVKPSDLWDWESLREQVKEHGTRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D+MK+++I  NGSIQ+I  IP ++K LYKTVWE
Sbjct: 632 QRRVLAGEFQVVNPWLLKDLVDMGLWSDSMKNRIIAENGSIQNIPNIPAEVKALYKTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 692 ISQRQVVQMAADRGAFIDQSQSLNIHMKDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 751

Query: 949 NAIQFTIDKT--KMANAMASK 967
             IQFT+D+   K+A+A +++
Sbjct: 752 APIQFTVDQQALKVADANSAQ 772



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE +  W+LMC
Sbjct: 298 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGDWTLMC 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +GE+F+ LY+KYE  G
Sbjct: 358 PNECPGLADCYGEEFEALYEKYEKAG 383



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL AS ++A  +GPY T++GSP S
Sbjct: 509 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASVQLAKEEGPYSTFKGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLWDW +L+     +G +
Sbjct: 569 EGILQFDMWNVKPSDLWDWESLREQVKEHGTR 600



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 44  ITQKVISGVYGGVTTVQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN +    +PMIS + YE +M++ + L+SAI+YDRDF Y +FGFK
Sbjct: 95  TKKQWSAVVSDLYHYVNPKNDRASPMISQETYECVMRHKEELDSAIVYDRDFQYQYFGFK 154



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 393 KLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 428


>gi|255949828|ref|XP_002565681.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592698|emb|CAP99060.1| Pc22g17720 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 863

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/492 (64%), Positives = 396/492 (80%), Gaps = 1/492 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+FD LY KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGEEFDALYAKYEQEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDSARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++  NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVHNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS +IA + GPY+TY GSPVSQGILQYDMW  TPTDLWDWA+LK KIA+ 
Sbjct: 533 FETIYHGALTASSDIAKKLGPYETYPGSPVSQGILQYDMWDRTPTDLWDWASLKAKIAET 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+ +L MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++     +  ARS++ 
Sbjct: 713 LKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQLL-VEDTNVARSKKR 771

Query: 571 IQADQEQAMAAM 582
           +      A +A+
Sbjct: 772 VGGTGASAYSAI 783



 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWA+LK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWASLKAKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ +L MAADRGA+IDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRNILQMAADRGAYIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+FD LY KYE EG
Sbjct: 353 PNEAPGLADVYGEEFDALYAKYEQEG 378



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+GAL AS +IA + GPY+TY GSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSPEARQLNIQIFETIYHGALTASSDIAKKLGPYETYPGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDWA+LK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWASLKAKIAETGVR 595



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GV   +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVGTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS +HYEI+MK+A+ LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSMVISDLYHYVNPKNNKPAPMISKEHYEIVMKHAEELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|346327607|gb|EGX97203.1| ribonucleoside-diphosphate reductase large chain [Cordyceps
           militaris CM01]
          Length = 904

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 388/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE +GK  + + A+KLW++IL++Q ETG P+MLYKDACN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYELDGKGRKTIKAQKLWYSILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DE AVCNLAS+AL  Y++     Y+F KL +V  
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDETAVCNLASLALPAYVDYNQGVYDFKKLHEVTM 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YP+ EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNRIIDVNHYPIPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL +S E+A  +GPYQ+++GSPVS+GILQ+DMW V P+DLW+W  L+E+I +H
Sbjct: 533 FETIYHAALTSSMELAKEEGPYQSFKGSPVSEGILQFDMWNVKPSDLWEWDELREQIKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I +NGSIQ+I  IP  +K LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIADNGSIQNIPNIPADIKALYKTVWEISQRQIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MRDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEAL 758



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLW+W  L+E+I +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQFDMWNVKPSDLWEWDELREQIKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I +NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIADNGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQIVQMAADRGAFIDQSQSLNIHMRDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE +G
Sbjct: 353 PNECPGLADCYGDEFEALYEKYELDG 378



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL +S E+A  +GPYQ+++GSPVS
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTSSMELAKEEGPYQSFKGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLW+W  L+     +G++
Sbjct: 564 EGILQFDMWNVKPSDLWEWDELREQIKQHGVR 595



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +LY+ VN      +PMI+   YE +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVISDLYHYVNPRNDRASPMIAKSTYECVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW++IL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYSILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|212528622|ref|XP_002144468.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           marneffei ATCC 18224]
 gi|210073866|gb|EEA27953.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           marneffei ATCC 18224]
          Length = 872

 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/466 (67%), Positives = 386/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+FD LY+KYE EG+  R V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEASGLADVYGEEFDALYEKYEREGRGRRTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS E+A   G Y+TYEGSPVSQGILQYDMW  TPTDLWDW +LK +I++H
Sbjct: 533 FETIYHGALTASIELAKEHGTYETYEGSPVSQGILQYDMWERTPTDLWDWDSLKAQISQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+++L MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 MKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW +LK +I++HGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWERTPTDLWDWDSLKAQISQHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+++L MAADRGA+IDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRSILQMAADRGAYIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+FD LY+KYE EG
Sbjct: 353 PNEASGLADVYGEEFDALYEKYEREG 378



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS E+A   G Y+TYEGSPV
Sbjct: 503 AVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGALTASIELAKEHGTYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK     +G++
Sbjct: 563 SQGILQYDMWERTPTDLWDWDSLKAQISQHGVR 595



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +A+L ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VIE+LY+ VN +     PMIS + YE +MK+A+ LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSAVIEDLYHYVNPKNNKAAPMISGEMYETVMKHAEELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|358338264|dbj|GAA30040.2| ribonucleoside-diphosphate reductase subunit M1 [Clonorchis sinensis]
          Length = 1065

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/536 (59%), Positives = 413/536 (77%), Gaps = 32/536 (5%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            RPGAFA+YLEPWH D+  F+E++KNTG EE R RDLFY LWIPD FMRRVE++  W+LM 
Sbjct: 533  RPGAFAVYLEPWHPDVLQFIEMRKNTGAEEIRGRDLFYALWIPDIFMRRVEANEDWTLMD 592

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            P+ C GL D WGE+F+ LY KYEAEG+  R +PA+++W +I+++QIETGTP+MLYKDACN
Sbjct: 593  PHECPGLPDKWGEEFEALYLKYEAEGRGRRTLPAQEVWHSIIEAQIETGTPFMLYKDACN 652

Query: 211  RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            RKSN Q+LGTI+CSNLCTEI+EY+S DE AVCNLASI+L  +++  + T++F KL+ V +
Sbjct: 653  RKSNHQHLGTIRCSNLCTEIIEYSSPDETAVCNLASISLGHFVDAKEHTFDFDKLQYVTR 712

Query: 271  IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            ++T+NLN++ID +FYPVEEAR SNMRHRPIGIGVQGLAD F+ +R PFD  E+  LNK+I
Sbjct: 713  VITRNLNRVIDNSFYPVEEARRSNMRHRPIGIGVQGLADAFLLLRYPFDSPEAAALNKRI 772

Query: 331  FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-----WDWAALKE 385
            FETIY+ AL+ASC++A  +GP++TYEG PVS+GILQ DMWGV   +L      DWA L++
Sbjct: 773  FETIYFAALDASCDLAKEEGPFETYEGCPVSKGILQPDMWGVDTEELSKISGLDWAGLRQ 832

Query: 386  KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            +I K+GVRNSLL+APMPTASTAQILGNNES EP+TSN+YSRRVLSGEFQ+VN +L+ DL 
Sbjct: 833  RIKKYGVRNSLLLAPMPTASTAQILGNNESIEPFTSNVYSRRVLSGEFQIVNPYLMDDLN 892

Query: 446  ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            +LGLW + +K  ++ N GS+QDI+GIP ++K LYKT+WE+ Q+ ++DMAADRG FIDQSQ
Sbjct: 893  KLGLWSEELKSAIVANQGSVQDIQGIPDEIKALYKTIWELSQRKIIDMAADRGPFIDQSQ 952

Query: 506  SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM----- 560
            SLN+++A+ NY K++SMHF+ WK GLKTGMYYLRT+PAA+ I+FTIDKT++   M     
Sbjct: 953  SLNLHVAQPNYGKITSMHFYAWKKGLKTGMYYLRTRPAADPIKFTIDKTRVRALMERGVT 1012

Query: 561  --------ASKDA-----------RSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                       DA           R  +EI   Q + M A+ C   N E C+  QG
Sbjct: 1013 VNVVNGTTGKGDAIDEQQEAEEEERIMKEI---QRRNMEAITCSLKNPEGCLSCQG 1065



 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 139/255 (54%), Positives = 179/255 (70%), Gaps = 32/255 (12%)

Query: 772  DMWGVTPTDL-----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            DMWGV   +L      DWA L+++I K+GVRNSLL+APMPTASTAQILGNNES EP+TSN
Sbjct: 810  DMWGVDTEELSKISGLDWAGLRQRIKKYGVRNSLLLAPMPTASTAQILGNNESIEPFTSN 869

Query: 827  IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
            +YSRRVLSGEFQ+VN +L+ DL +LGLW + +K  ++ N GS+QDI+GIP ++K LYKT+
Sbjct: 870  VYSRRVLSGEFQIVNPYLMDDLNKLGLWSEELKSAIVANQGSVQDIQGIPDEIKALYKTI 929

Query: 887  WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
            WE+ Q+ ++DMAADRG FIDQSQSLN+++A+ NY K++SMHF+ WK GLKTGMYYLRT+P
Sbjct: 930  WELSQRKIIDMAADRGPFIDQSQSLNLHVAQPNYGKITSMHFYAWKKGLKTGMYYLRTRP 989

Query: 947  AANAIQFTIDKTKMANAMASKDT------------------------RSQEEIQADQEQA 982
            AA+ I+FTIDKT++   M    T                        R  +EI   Q + 
Sbjct: 990  AADPIKFTIDKTRVRALMERGVTVNVVNGTTGKGDAIDEQQEAEEEERIMKEI---QRRN 1046

Query: 983  MAAMICRRDNKEDCL 997
            M A+ C   N E CL
Sbjct: 1047 MEAITCSLKNPEGCL 1061



 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+  F+E++KNTG EE R RDLFY LWIPD FMRRVE++  W+LM 
Sbjct: 533 RPGAFAVYLEPWHPDVLQFIEMRKNTGAEEIRGRDLFYALWIPDIFMRRVEANEDWTLMD 592

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D WGE+F+ LY KYEAEG
Sbjct: 593 PHECPGLPDKWGEEFEALYLKYEAEG 618



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 5/97 (5%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R PFD  E+  LNK+IFETIY+ AL+ASC++A  +GP++TYEG PVS
Sbjct: 744 IGVQGLADAFLLLRYPFDSPEAAALNKRIFETIYFAALDASCDLAKEEGPFETYEGCPVS 803

Query: 653 QGILQYDMWGVTPTDL-----WDWAALKVLALVYGLK 684
           +GILQ DMWGV   +L      DWA L+     YG++
Sbjct: 804 KGILQPDMWGVDTEELSKISGLDWAGLRQRIKKYGVR 840



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E +E+LY  VN+ T   +P++S++  +II +NADRLNSAI Y RDFNYN+FGFK
Sbjct: 336 EAMEDLYGYVNERTKLHSPILSEEVIKIIRENADRLNSAIDYQRDFNYNYFGFK 389



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           ++W +I+++QIETGTP+MLYKDACNRKSN Q+L  I
Sbjct: 628 EVWHSIIEAQIETGTPFMLYKDACNRKSNHQHLGTI 663


>gi|367034670|ref|XP_003666617.1| hypothetical protein MYCTH_2311451 [Myceliophthora thermophila ATCC
           42464]
 gi|347013890|gb|AEO61372.1| hypothetical protein MYCTH_2311451 [Myceliophthora thermophila ATCC
           42464]
          Length = 911

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/466 (68%), Positives = 390/466 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +GE+F+ LY++YE EG+  R V A+KLW+AIL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGEEFEALYERYEREGRGRRTVRAQKLWYAILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++  +  Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPQFVDYNEGVYDFKKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNRIIDINHYPVKEAYNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A   GPY TYEGSPVSQGILQYDMW V P+DLWDW ALK KI +H
Sbjct: 533 FETIYHAALTASCDLAKEQGPYSTYEGSPVSQGILQYDMWNVKPSDLWDWDALKAKIKEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GSIQ+I  IP  +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWEISQRTIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAAQPIQFTVDQEAL 758



 Score =  296 bits (757), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+DLWDW ALK KI +HGVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVKPSDLWDWDALKAKIKEHGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW DNMK+++I   GSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVQMAADRGAFIDQSQSLNIHMREPTMGKITSMHFTGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 QPIQFTVDQEAL 758



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL ASC++A   GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASCDLAKEQGPYSTYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V P+DLWDW ALK     +G++
Sbjct: 564 QGILQYDMWNVKPSDLWDWDALKAKIKEHGVR 595



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/78 (69%), Positives = 66/78 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDL 78
           PN C GL+D +GE+F+ L
Sbjct: 353 PNECPGLADCYGEEFEAL 370



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ VN + G  +PMI+ + YE +M++ D  +SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVVSDLYHYVNPKNGKPSPMIAKETYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|436833879|ref|YP_007319095.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrella
           aestuarina BUZ 2]
 gi|384065292|emb|CCG98502.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrella
           aestuarina BUZ 2]
          Length = 825

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/528 (62%), Positives = 409/528 (77%), Gaps = 26/528 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DIFDFL+LKKN GKEE RARDLFY +W PD FM+RVE +  WSL C
Sbjct: 293 RKGSFAVYLEPWHADIFDFLQLKKNHGKEELRARDLFYAIWTPDLFMKRVEDNDTWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD++G++F++LY +YE EG+  R V A++LWF IL++Q ETGTPYMLYKDA N
Sbjct: 353 PHECPGLSDAYGDEFEELYTRYEREGRARRTVKAQELWFEILEAQTETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNFTKLKD 267
           RKSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  +I         ++  KL +
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIMEYTSPDEVAVCNLASIALPKFITKGTDGILRFDHQKLME 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V +I T+NLNKIID+N+YPVEEAR SNMRHRPIG+GVQGLAD FI +R+PF+ +E+R LN
Sbjct: 473 VTQIATRNLNKIIDLNYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFESDEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIYYGA+ AS E+A +DGPY+T++GSP+S G  Q+DMWGVTP +  WDW AL+ +
Sbjct: 533 EDIFETIYYGAMTASMELAKKDGPYETWKGSPISNGEFQFDMWGVTPKSGRWDWNALRTQ 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLLRDLV+
Sbjct: 593 VVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLRDLVK 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW++ MK+ LI+ NGS+QDI  IPQ LKDLYKTVWEI QK ++DMAADRGA+I QSQS
Sbjct: 653 LGLWNEAMKNNLILANGSVQDIPNIPQHLKDLYKTVWEIKQKHIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI----DKTKMANAMAS 562
           LNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK A +A++FT+     + ++  AMA 
Sbjct: 713 LNIHIQDANFGKLTSMHFYAWKAGLKTGMYYLRTKAATDAVKFTVVQPQAEPQLEPAMAE 772

Query: 563 KD---------ARSQEEIQ---------ADQEQAMAAMICRRDNKEDC 592
                        ++E            ++ E A AAM C  D+ E C
Sbjct: 773 TAPVEKPLDYVGYAKEHAAQASAQAPQVSEAELAYAAMQCSLDDPEGC 820



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/251 (58%), Positives = 183/251 (72%), Gaps = 23/251 (9%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  WDW AL+ ++ +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDMWGVTPKSGRWDWNALRTQVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLLRDLV+LGLW++ MK+ LI+ NGS+QDI  IPQ LKDLYKTVW
Sbjct: 630 YTRRVLSGEFVVVNKHLLRDLVKLGLWNEAMKNNLILANGSVQDIPNIPQHLKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGA+I QSQSLNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 690 EIKQKHIIDMAADRGAYICQSQSLNIHIQDANFGKLTSMHFYAWKAGLKTGMYYLRTKAA 749

Query: 948 ANAIQFTI----DKTKMANAMASK------------------DTRSQEEIQADQEQAMAA 985
            +A++FT+     + ++  AMA                       +Q    ++ E A AA
Sbjct: 750 TDAVKFTVVQPQAEPQLEPAMAETAPVEKPLDYVGYAKEHAAQASAQAPQVSEAELAYAA 809

Query: 986 MICRRDNKEDC 996
           M C  D+ E C
Sbjct: 810 MQCSLDDPEGC 820



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 81/117 (69%), Gaps = 8/117 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DIFDFL+LKKN GKEE RARDLFY +W PD FM+RVE +  WSL C
Sbjct: 293 RKGSFAVYLEPWHADIFDFLQLKKNHGKEELRARDLFYAIWTPDLFMKRVEDNDTWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTG 117
           P+ C GLSD++G++F++LY +YE EG    R        E W    F+ LE +  TG
Sbjct: 353 PHECPGLSDAYGDEFEELYTRYEREG----RARRTVKAQELW----FEILEAQTETG 401



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 74/93 (79%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+ +E+R LN+ IFETIYYGA+ AS E+A +DGPY+T++GSP+S
Sbjct: 507 LGVQGLADAFIMLRMPFESDEARRLNEDIFETIYYGAMTASMELAKKDGPYETWKGSPIS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
            G  Q+DMWGVTP +  WDW AL+   + +G++
Sbjct: 567 NGEFQFDMWGVTPKSGRWDWNALRTQVVEHGVR 599



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF IL++Q ETGTPYMLYKDA NRKSNQ+NL  I+
Sbjct: 384 VKAQELWFEILEAQTETGTPYMLYKDAANRKSNQKNLGTIK 424



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 42/63 (66%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++N+     I+ LY  ++ +TG    +IS + Y++I  NA  L+S IIYDRD+ Y++F
Sbjct: 87  HKETNKSFSGTIKRLYTYIDPKTGENASLISKEVYDVIRNNAAVLDSTIIYDRDYGYDYF 146

Query: 768 GFK 770
           G+K
Sbjct: 147 GYK 149


>gi|453080262|gb|EMF08313.1| ribonucleoside-diphosphate reductase large chain [Mycosphaerella
           populorum SO2202]
          Length = 914

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/493 (64%), Positives = 403/493 (81%), Gaps = 2/493 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLF+ LWIPD FM+RVE +A+W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVISFMDLRKNHGKEEVRARDLFFALWIPDLFMKRVEQNAEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F++LY +YE EG+    V A+K+W+AIL++Q ETG P++LYKDA N
Sbjct: 353 PNECPGLADVYGDEFEELYTRYEKEGRGRETVRAQKVWYAILEAQTETGGPFILYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+EYT+ DEVAVCNLAS+AL  Y++  ++ ++F KL +V +
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDLENEKFDFQKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNKII+VN YPV EA+ SNMRHRPIG+GV GLAD F+ +R+PF+  E+R LN QI
Sbjct: 473 VVTKNLNKIIEVNHYPVPEAKKSNMRHRPIGLGVSGLADAFLALRMPFESPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++A + GPY+TYEGSPVS+G LQYDMWGVTP+DLWDW +LK KIA+H
Sbjct: 533 FETIYHAALTASCDLAKKLGPYETYEGSPVSKGELQYDMWGVTPSDLWDWDSLKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QI+G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+ GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDRGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+++I + GSIQ I  I   LK LYKTVWEI Q+ ++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SENMKNRIIADGGSIQRIPNIGDDLKALYKTVWEISQRNIVQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT--KMANAMASKDARSQ 568
           + E    K++SMHF GWKLGLKTGMYYLRT+ A+  IQFT+D+   K+A+   S+   ++
Sbjct: 713 LKEPTMGKITSMHFTGWKLGLKTGMYYLRTQAASAPIQFTVDQEMLKVADTNISRTGAAK 772

Query: 569 EEIQADQEQAMAA 581
           + + +    A++A
Sbjct: 773 KRMASGAYNAVSA 785



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/219 (63%), Positives = 174/219 (79%), Gaps = 2/219 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLWDW +LK KIA+HGVRNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPSDLWDWDSLKAKIAEHGVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+ GLW +NMK+++I + GSIQ I  I   LK LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDRGLWSENMKNRIIADGGSIQRIPNIGDDLKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT+ A+
Sbjct: 687 ISQRNIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTQAAS 746

Query: 949 NAIQFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAA 985
             IQFT+D+   K+A+   S+   +++ + +    A++A
Sbjct: 747 APIQFTVDQEMLKVADTNISRTGAAKKRMASGAYNAVSA 785



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+  F++L+KN GKEE RARDLF+ LWIPD FM+RVE +A+W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVISFMDLRKNHGKEEVRARDLFFALWIPDLFMKRVEQNAEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F++LY +YE EG
Sbjct: 353 PNECPGLADVYGDEFEELYTRYEKEG 378



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PF+  E+R LN QIFETIY+ AL ASC++A + GPY+TYEGSPVS
Sbjct: 504 LGVSGLADAFLALRMPFESPEARQLNIQIFETIYHAALTASCDLAKKLGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMWGVTP+DLWDW +LK     +G++
Sbjct: 564 KGELQYDMWGVTPSDLWDWDSLKAKIAEHGVR 595



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VINGVYQ----GVTTIQLDDLAA-ETAAYMTTTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY  VN +    +PMISD  Y+++M++AD LNSAI+YDRDFNY +FGFK
Sbjct: 90  TKKQFSAVVSDLYTYVNPKNNKPSPMISDYTYKVVMEHADELNSAIVYDRDFNYQYFGFK 149



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   K+W+AIL++Q ETG P++LYKDA NRKSNQ+NL  I+
Sbjct: 384 VRAQKVWYAILEAQTETGGPFILYKDAANRKSNQKNLGTIK 424


>gi|50426387|ref|XP_461790.1| DEHA2G05610p [Debaryomyces hansenii CBS767]
 gi|49657460|emb|CAG90249.1| DEHA2G05610p [Debaryomyces hansenii CBS767]
          Length = 867

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/483 (66%), Positives = 398/483 (82%), Gaps = 4/483 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GLSD +G++F++LY KYE E +    V A+KLW+AILD+Q ETGTP+MLYKDACN
Sbjct: 353 PNEAKGLSDVYGDEFEELYTKYEKENRGRSVVKAQKLWYAILDAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  +++  + T  Y+F KL +V
Sbjct: 413 KKTNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPAFVDKNNTTSWYDFEKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN+IID N+YPV EARNSNMR+RPI +GVQGLAD F+ +RLPFD  E++ LN 
Sbjct: 473 TKVVTRNLNRIIDRNYYPVPEARNSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNT 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GA+EAS E+A  +GPYQTYEGSP S+GILQ+D+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHGAVEASIELAEIEGPYQTYEGSPASKGILQFDLWERKPTELWDWDTLKQKLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 KHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D+MK+ +I NNGSIQ +  IP +LK LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 IWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D+  + N  ASK   S 
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDQNSVNN--ASKTIASL 770

Query: 569 EEI 571
           E++
Sbjct: 771 EKL 773



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/207 (66%), Positives = 171/207 (82%), Gaps = 2/207 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 569 LQFDLWERKPTELWDWDTLKQKLAKHGIRNSLLVAPMPTASTSQILGYNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LG+W+D+MK+ +I NNGSIQ +  IP +LK LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGIWNDDMKNNIISNNGSIQTLPNIPDELKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEI 975
            AIQFT+D+  + N  ASK   S E++
Sbjct: 749 AAIQFTVDQNSVNN--ASKTIASLEKL 773



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN  +GLSD +G++F++LY KYE E
Sbjct: 353 PNEAKGLSDVYGDEFEELYTKYEKE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 74/97 (76%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+GA+EAS E+A  +GPYQTYE
Sbjct: 501 NRPIALGVQGLADAFMALRLPFDSQEAKELNTQIFETIYHGAVEASIELAEIEGPYQTYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+D+W   PT+LWDW  LK     +G++
Sbjct: 561 GSPASKGILQFDLWERKPTELWDWDTLKQKLAKHGIR 597



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GV   +L + AA +  A +  +   +AIL ++I            
Sbjct: 35  EPVAITQRVISGVYQGVNTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V +ELY  VN +T   +PMIS   Y+II  NA+ LNSAI++DRDFNYN+
Sbjct: 86  LHKQTTKQFSQVSKELYEYVNPKTDLHSPMISKDTYDIIQANANELNSAIVFDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 38/43 (88%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++V   KLW+AILD+Q ETGTP+MLYKDACN+K+NQ+NL +I+
Sbjct: 382 SVVKAQKLWYAILDAQTETGTPFMLYKDACNKKTNQKNLGIIK 424


>gi|4151068|emb|CAA71816.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/522 (61%), Positives = 398/522 (76%), Gaps = 27/522 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+++KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WGE F+ LY KYE EGK  + V A+ LWF IL SQIETGTPYMLYKD+CN
Sbjct: 353 PSEAPGLADCWGEDFEKLYTKYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKEVPDESQPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  +VT NLNKIIDVN+YPVE A+ SN+RHRPIG+GVQGLAD FI
Sbjct: 473 RGSKNRYFDFAKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+AS E+AA++GPY+TY GSPVS+GILQ DMWGV
Sbjct: 533 LLGMSFDSPEAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+D WDW  L+  IAK+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSDRWDWGVLRGMIAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I ++GS+Q I  IPQ LK +YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTLKNRIIYDDGSVQKIPEIPQDLKVIYKTVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +         + + +   D +  MA M+C   N+++C+ 
Sbjct: 773 TSML---------KEKPQTAVDDDTKMAQMVCSLSNRDECMA 805



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 174/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+D WDW  L+  IAK+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSDRWDWGVLRGMIAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I ++GS+Q I  IPQ LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNRIIYDDGSVQKIPEIPQDLKVIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++DMA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSRGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + +         + + +   D +  MA M+C   N+++C+
Sbjct: 768 KFTVDTSML---------KEKPQTAVDDDTKMAQMVCSLSNRDECM 804



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+++KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHSDIFEFLDMRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WGE F+ LY KYE EG
Sbjct: 353 PSEAPGLADCWGEDFEKLYTKYEREG 378



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + + FD  E++ LNK IFETIYY AL+AS E+AA++GPY+TY GSPVS
Sbjct: 522 LGVQGLADTFILLGMSFDSPEAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGVTP+D WDW  L+ +    G++
Sbjct: 582 KGILQPDMWGVTPSDRWDWGVLRGMIAKNGVR 613



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 46/54 (85%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++YN +++ +G + P+ISD+ YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETVKDMYNHISERSGLKAPLISDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|168046427|ref|XP_001775675.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672948|gb|EDQ59478.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/521 (62%), Positives = 405/521 (77%), Gaps = 22/521 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLWIPD FMRRV+ +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDWLDLRKNHGKEENRARDLFYGLWIPDLFMRRVQENGVWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EGK  + V A+KLWFA+L++QIETG PY+L+KDACN
Sbjct: 353 PNEAPGLADCWGEEFEKLYTRYEVEGKAKKVVQAQKLWFAVLEAQIETGNPYILFKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
           RKSNQQNLGTIK SNLCTEIVE+TS DE AVCNLASIAL  ++     P D         
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASIALPRFVRERGVPMDSHPTKVIGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL ++  +VT+NLN+IIDVN+YPVE AR SNMRHRPIG+GVQGLAD FI
Sbjct: 473 NGYESRYFDFEKLGEITSLVTRNLNRIIDVNYYPVEAARRSNMRHRPIGLGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LN+ IFETIYY AL  SCE+AA +G Y+TY+G P+S+G+LQ DMW V
Sbjct: 533 LLGMPFDSEEAQKLNRDIFETIYYHALRTSCELAAEEGVYETYDGCPISKGLLQPDMWDV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+  WDW AL+  IAK+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 KPSSRWDWDALRRMIAKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL +LGLW  ++K+Q+I +NGSIQ I+ IP  LK +Y+TVWEI Q+ ++D
Sbjct: 653 FVVVNKHLLNDLTDLGLWTQDLKNQIIYHNGSIQQIDAIPAGLKKIYRTVWEIKQRAIVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAA RGAFIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYSWTKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           ++    ++ +K A     I  D E  ++ M+C  +NKE+C+
Sbjct: 773 QS----SIKTKQATPAAAIAEDLEVKLSQMVCSLENKEECM 809



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 176/226 (77%), Gaps = 4/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+  WDW AL+  IAK+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWDVKPSSRWDWDALRRMIAKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL +LGLW  ++K+Q+I +NGSIQ I+ IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLNDLTDLGLWTQDLKNQIIYHNGSIQQIDAIPAGLKKIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA RGAFIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RAIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYSWTKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D++    ++ +K       I  D E  ++ M+C  +NKE+C+
Sbjct: 768 KFTVDQS----SIKTKQATPAAAIAEDLEVKLSQMVCSLENKEECM 809



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLWIPD FMRRV+ +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDWLDLRKNHGKEENRARDLFYGLWIPDLFMRRVQENGVWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNEAPGLADCWGEEFEKLYTRYEVEG 378



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + +PFD  E++ LN+ IFETIYY AL  SCE+AA +G Y+TY+G P+S
Sbjct: 522 LGVQGLADAFILLGMPFDSEEAQKLNRDIFETIYYHALRTSCELAAEEGVYETYDGCPIS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQ DMW V P+  WDW AL+ +    G++
Sbjct: 582 KGLLQPDMWDVKPSSRWDWDALRRMIAKNGVR 613



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+    +  K   +V   KLWFA+L++QIETG PY+L+KDACNRKSNQQNL
Sbjct: 361 DCWGEEFEKLYTRYEVEGKAKKVVQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++Y  VN  +G ++P+I D  Y++I+KNA  L+S IIYDRDF+Y++FGFK
Sbjct: 96  ETVKDMYRHVNARSGLKSPLIDDDVYDLIIKNAALLDSEIIYDRDFDYDYFGFK 149


>gi|242765906|ref|XP_002341068.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724264|gb|EED23681.1| ribonucleotide reductase large subunit Rnr1, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 873

 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/466 (67%), Positives = 384/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+FD LY+KYE EG+  R V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEGRGRRTVKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY + DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYCAPDEVAVCNLASLALPTFVDTARGEYDFGKLHEVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKKSNFRHRPIAVGVNGLADAFLALRLPFDSPEAKQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS E+A   G Y+TYEGSPVSQGILQYDMW  TPTDLWDW ALK +I +H
Sbjct: 533 FETIYHGALTASIELAKEYGTYETYEGSPVSQGILQYDMWDRTPTDLWDWDALKAQIREH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+++L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 MKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALK +I +HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDALKAQIREHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+++L MAADRGAFIDQSQSLNI+M E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRSILQMAADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMRRVEANQDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+FD LY+KYE EG
Sbjct: 353 PNEAPGLADVYGEEFDALYEKYEKEG 378



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS E+A   G Y+TYEGSPV
Sbjct: 503 AVGVNGLADAFLALRLPFDSPEAKQLNIQIFETIYHGALTASIELAKEYGTYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW ALK     +G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDALKAQIREHGIR 595



 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +A+L ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VIE+LY+ VN +     PMIS + YE +MK+AD LNSAI+YDRDFNY +
Sbjct: 86  LHKQTKKQFSAVIEDLYHYVNPKNNKAAPMISPEMYETVMKHADELNSAIVYDRDFNYQY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|400598307|gb|EJP66024.1| ribonucleoside-diphosphate reductase large chain [Beauveria
           bassiana ARSEF 2860]
          Length = 906

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY+KYE EGK  + V A+KLW++IL++Q ETG P+MLYKD CN
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEREGKGRKTVKAQKLWYSILEAQTETGNPFMLYKDHCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EY + DE AVCNLAS+AL  Y++     Y+F KL +V  
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYCAPDETAVCNLASLALPAYVDYNQGVYDFKKLHEVTM 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLN+IIDVN YP+ EARNSNMRHRPIG+GVQGLAD F+ +R+PF+  E+R LNKQI
Sbjct: 473 VVVRNLNRIIDVNHYPIPEARNSNMRHRPIGVGVQGLADAFLALRMPFESPEARELNKQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS E+A  +GPY++++GSP S+GILQ+DMW V P+DLW+W  L+E++ +H
Sbjct: 533 FETIYHAALTASVELAKEEGPYESFKGSPASEGILQHDMWNVKPSDLWEWDELREQVKQH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN  LL+DLV++GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLKDLVDMGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+++I  NGSIQ+I  IP  +K LYKTVWEI Q+ V+ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAENGSIQNIPNIPADIKALYKTVWEISQRQVIQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           M +    K++SMHF GWKLGLKTGMYYLRT+ AA  IQFT+D+  +
Sbjct: 713 MRDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAAAPIQFTVDQEAL 758



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLW+W  L+E++ +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQHDMWNVKPSDLWEWDELREQVKQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LL+DLV++GLW D MK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLKDLVDMGLWSDAMKNRIIAENGSIQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ V+ MAADRGAFIDQSQSLNI+M +    K++SMHF GWKLGLKTGMYYLRT+ AA
Sbjct: 687 ISQRQVIQMAADRGAFIDQSQSLNIHMRDPTMGKITSMHFAGWKLGLKTGMYYLRTQAAA 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+  +
Sbjct: 747 APIQFTVDQEAL 758



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF  LWIPD FM+RVE + +W+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEKNGEWTLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNECPGLADCYGDEFEALYEKYEREG 378



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+ AL AS E+A  +GPY++++GSP S
Sbjct: 504 VGVQGLADAFLALRMPFESPEARELNKQIFETIYHAALTASVELAKEEGPYESFKGSPAS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V P+DLW+W  L+     +G++
Sbjct: 564 EGILQHDMWNVKPSDLWEWDELREQVKQHGVR 595



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 39  ITQKVISGVYGGVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI +LY+ VN      +PMI+   YE +M++ + L+SAI+YDRDFNY +FGFK
Sbjct: 90  TKKQWSSVISDLYHYVNPRNDRASPMIAKSTYECVMRHKEELDSAIVYDRDFNYQYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW++IL++Q ETG P+MLYKD CNRKSNQ+NL  I
Sbjct: 384 VKAQKLWYSILEAQTETGNPFMLYKDHCNRKSNQKNLGTI 423


>gi|299743194|ref|XP_001835601.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
 gi|298405544|gb|EAU86172.2| hypothetical protein CC1G_03383 [Coprinopsis cinerea okayama7#130]
          Length = 895

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/469 (67%), Positives = 390/469 (83%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE+D +WSL C
Sbjct: 318 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFC 377

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D    +F++LY++YE EG+  + + A+KLW+AIL++QIETG P+M+YKD  N
Sbjct: 378 PNEAPGLHDVHSAEFEELYERYEKEGRARKTIRAQKLWYAILEAQIETGGPFMVYKDHAN 437

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY+S DE AVCNLAS+AL  +I   D  Y+F KL +V K
Sbjct: 438 AKSNQKNLGTIKSSNLCTEIIEYSSPDETAVCNLASLALPTFIK--DGVYDFKKLHEVTK 495

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN+IIDVN+YP+ EAR SNMRHRPIGIGVQGLAD F+ +R+PFD   ++ LN QI
Sbjct: 496 VVTYNLNRIIDVNYYPIPEARRSNMRHRPIGIGVQGLADAFMALRMPFDSQAAKELNLQI 555

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS EIAARDGPY+T+EGSP SQG LQYD+WGV P+DLWDWA+LK +IAK 
Sbjct: 556 FETIYHAALEASSEIAARDGPYETWEGSPASQGQLQYDLWGVKPSDLWDWASLKAQIAKT 615

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+LGLW
Sbjct: 616 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDLGLW 675

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK+ +I +NGS+Q+I  IP  +K +YKTVWEI QK V+D+AADRGAFI QSQSLN++
Sbjct: 676 DDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWEISQKKVIDLAADRGAFICQSQSLNVH 735

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           ++     +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +  A
Sbjct: 736 LSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSLLKAA 784



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 166/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGV P+DLWDWA+LK +IAK G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 590 LQYDLWGVKPSDLWDWASLKAQIAKTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 649

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+LGLWDDNMK+ +I +NGS+Q+I  IP  +K +YKTVWE
Sbjct: 650 TRRVLAGEFQVVCPWLLRELVDLGLWDDNMKNLIIAHNGSVQNIPNIPADVKAIYKTVWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFI QSQSLN++++     +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 710 ISQKKVIDLAADRGAFICQSQSLNVHLSAPTMGQLTSMHFYGWKKGLKTGMYYLRTRPAA 769

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D++ +  A
Sbjct: 770 QAIQFTVDQSLLKAA 784



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE+D +WSL C
Sbjct: 318 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEADGEWSLFC 377

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL D    +F++LY++YE EG
Sbjct: 378 PNEAPGLHDVHSAEFEELYERYEKEG 403



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD   ++ LN QIFETIY+ ALEAS EIAARDGPY+T+EGSP S
Sbjct: 527 IGVQGLADAFMALRMPFDSQAAKELNLQIFETIYHAALEASSEIAARDGPYETWEGSPAS 586

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYD+WGV P+DLWDWA+LK      GL+
Sbjct: 587 QGQLQYDLWGVKPSDLWDWASLKAQIAKTGLR 618



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GVT  +L + AA +  A +      +A+L ++I       L+K+   +K
Sbjct: 64  VAQKVVVGVYQGVTTVELDNLAA-ETAAYLTTKHPDYAVLAARIAVSN---LHKE--TKK 117

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S  Q   V+++LY  VN + G    MIS + +E+I  NAD L+SAIIY+RDFNYN+FGFK
Sbjct: 118 SFSQ---VMKDLYEYVNPKNGKPAGMISKETWEVIRDNADTLDSAIIYNRDFNYNYFGFK 174



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+M+YKD  N KSNQ+NL  I+
Sbjct: 413 KLWYAILEAQIETGGPFMVYKDHANAKSNQKNLGTIK 449


>gi|327403796|ref|YP_004344634.1| ribonucleoside-diphosphate reductase subunit alpha [Fluviicola
           taffensis DSM 16823]
 gi|327319304|gb|AEA43796.1| ribonucleoside-diphosphate reductase, alpha subunit [Fluviicola
           taffensis DSM 16823]
          Length = 789

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/502 (63%), Positives = 394/502 (78%), Gaps = 9/502 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH D+FDFL+LKKNTGKEE RARDLF+ LWIPD FM+RVE +  W+LMC
Sbjct: 292 RKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD++G +F+ LY +YE EGK  + + A+ LWF +L+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPGLSDTFGAEFEALYTQYETEGKGRKTIKAQDLWFKVLESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLG IK SNLCTEI+EYT+ DE+AVCNLAS+AL  Y+   D  ++  KL +V  
Sbjct: 412 AKSNQQNLGVIKSSNLCTEIIEYTAPDEIAVCNLASLALPKYVT-EDGKFDHDKLFEVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLN+IID NFYPVEEAR SNMRHRPIG+GVQGLAD FI +R PF+  E+R LN++I
Sbjct: 471 QATVNLNRIIDGNFYPVEEARKSNMRHRPIGLGVQGLADTFIMLRYPFESEEARALNREI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY A+ AS ++A  +GPY+TY GSPVS+G+ QYDMWGVTPT  W+W  LKE++AK+
Sbjct: 531 FETIYYAAMTASKDLAMAEGPYETYAGSPVSKGVFQYDMWGVTPTSRWEWDLLKEEVAKY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNE FEPYTSNIY+RRVLSGEF +VN HLL+DLV+ GLW
Sbjct: 591 GVRNSLLVAPMPTASTAQILGNNECFEPYTSNIYTRRVLSGEFIIVNKHLLKDLVKEGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +M+ +L+  NGS+Q+I  IPQ +KDLYKT WEI QK +++ AADRGA+I QSQSLNI+
Sbjct: 651 TKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWEISQKAIIEQAADRGAYICQSQSLNIF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           M   N+ K++SMHF+GWK GLKTGMYYLRTK A +AI+FT+DK       A         
Sbjct: 711 MENANFGKLTSMHFYGWKKGLKTGMYYLRTKAATDAIKFTVDKAVTEEPAAIS------- 763

Query: 571 IQADQEQAMAAMICRRDNKEDC 592
             A+ E+  AA+ C  DN ++C
Sbjct: 764 -AAELEEQQAAIACSLDNPDNC 784



 Score =  301 bits (771), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/228 (61%), Positives = 175/228 (76%), Gaps = 8/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+YDMWGVTPT  W+W  LKE++AK+GVRNSLL+APMPTASTAQILGNNE FEPYTSNIY
Sbjct: 565 FQYDMWGVTPTSRWEWDLLKEEVAKYGVRNSLLVAPMPTASTAQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF +VN HLL+DLV+ GLW  +M+ +L+  NGS+Q+I  IPQ +KDLYKT WE
Sbjct: 625 TRRVLSGEFIIVNKHLLKDLVKEGLWTKDMRQKLMAANGSVQNINEIPQYIKDLYKTAWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++ AADRGA+I QSQSLNI+M   N+ K++SMHF+GWK GLKTGMYYLRTK A 
Sbjct: 685 ISQKAIIEQAADRGAYICQSQSLNIFMENANFGKLTSMHFYGWKKGLKTGMYYLRTKAAT 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           +AI+FT+DK       A           A+ E+  AA+ C  DN ++C
Sbjct: 745 DAIKFTVDKAVTEEPAAIS--------AAELEEQQAAIACSLDNPDNC 784



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH D+FDFL+LKKNTGKEE RARDLF+ LWIPD FM+RVE +  W+LMC
Sbjct: 292 RKGSFAMYIEPWHADVFDFLDLKKNTGKEEMRARDLFFALWIPDLFMKRVEENGDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD++G +F+ LY +YE EG
Sbjct: 352 PHECPGLSDTFGAEFEALYTQYETEG 377



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R PF+  E+R LN++IFETIYY A+ AS ++A  +GPY+TY GSPVS
Sbjct: 502 LGVQGLADTFIMLRYPFESEEARALNREIFETIYYAAMTASKDLAMAEGPYETYAGSPVS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+ QYDMWGVTPT  W+W  LK     YG++
Sbjct: 562 KGVFQYDMWGVTPTSRWEWDLLKEEVAKYGVR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V +GI  YD  GVT T L + AA +V A        +A+L S+I             +++
Sbjct: 42  VIEGI--YD--GVTTTVLDNLAA-EVAAAKTIDHPDYALLASRIAVSN--------LHKE 88

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+LY  V+ +TG R  +I+D  YE+I  N++ L+S+IIYDRDF Y++FGFK
Sbjct: 89  TKKSFSEVMEDLYKYVDPKTGQRASLIADDVYEVIQNNSELLDSSIIYDRDFRYDYFGFK 148



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF +L+SQIETGTPYMLYKDA N KSNQQNL VI+
Sbjct: 388 LWFKVLESQIETGTPYMLYKDAANAKSNQQNLGVIK 423


>gi|449548832|gb|EMD39798.1| hypothetical protein CERSUDRAFT_112065 [Ceriporiopsis subvermispora
           B]
          Length = 875

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/479 (65%), Positives = 395/479 (82%), Gaps = 8/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+F++L+KN GKEE RARDLFY LWIPD FM+RVE+  QWSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEAGGQWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WGE+F+ LY++YE EG+  + + A+KLW+AI+++QIETG P+MLYKDA N
Sbjct: 354 PNEAPGLHEVWGEEFERLYEQYEREGRARKTIEAQKLWYAIMEAQIETGGPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY++ DE AVCNLASIAL  +I   +  YNF +L +VAK
Sbjct: 414 AKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASIALPSFIENGE--YNFQRLHEVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YP+ EAR SNMRHRPIG+GVQGLAD F+ +R+PFD  E+RLLNKQI
Sbjct: 472 VVAFNLNRIIDVNYYPIPEARRSNMRHRPIGVGVQGLADAFMALRMPFDSPEARLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+EAS ++A +DGPY+TYEGSP S+G LQYD+WGVTPTDLWDW +LK K+A+ 
Sbjct: 532 FETIYHAAVEASSDMAEKDGPYETYEGSPASKGELQYDLWGVTPTDLWDWTSLKAKVART 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+  LW
Sbjct: 592 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDRRLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+ +I + GS+Q I  IP  +K +YKTVWEI QK V+D+AADRGAFI QSQSLN++
Sbjct: 652 NDDMKNMIIAHGGSVQKIPEIPDDIKAIYKTVWEISQKKVIDLAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +      KDA++Q+
Sbjct: 712 LQSPTSGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSYL------KDAKTQQ 764



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/205 (62%), Positives = 166/205 (80%), Gaps = 6/205 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPTDLWDW +LK K+A+ G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 LQYDLWGVTPTDLWDWTSLKAKVARTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+  LW+D+MK+ +I + GS+Q I  IP  +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVDRRLWNDDMKNMIIAHGGSVQKIPEIPDDIKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVIDLAADRGAFICQSQSLNVHLQSPTSGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQE 973
            AIQFT+D++ +      KD ++Q+
Sbjct: 746 QAIQFTVDQSYL------KDAKTQQ 764



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+F++L+KN GKEE RARDLFY LWIPD FM+RVE+  QWSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEAGGQWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WGE+F+ LY++YE EG
Sbjct: 354 PNEAPGLHEVWGEEFERLYEQYEREG 379



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 80/104 (76%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +R+PFD  E+RLLNKQIFETIY+ A+EAS ++A +D
Sbjct: 491 ARRSNMRHRPIGVGVQGLADAFMALRMPFDSPEARLLNKQIFETIYHAAVEASSDMAEKD 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSP S+G LQYD+WGVTPTDLWDW +LK      GL+
Sbjct: 551 GPYETYEGSPASKGELQYDLWGVTPTDLWDWTSLKAKVARTGLR 594



 Score = 72.8 bits (177), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 11/121 (9%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GVT  +L + AA +  A +      +AIL ++I     +         K
Sbjct: 40  VAQKVIAGVYNGVTTAELDNLAA-ETAAYLTTKHPDYAILAARIAVSNLH---------K 89

Query: 711 SNQQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGF 769
             ++N   V+ +LY  VN + G    MIS   Y+I+M+NA++L+SAIIYDRDFNYN+FGF
Sbjct: 90  ETKKNFSAVVHDLYTYVNPKNGRAAGMISKDVYDIVMENAEQLDSAIIYDRDFNYNYFGF 149

Query: 770 K 770
           K
Sbjct: 150 K 150



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI+++QIETG P+MLYKDA N KSNQQNL  I+
Sbjct: 389 KLWYAIMEAQIETGGPFMLYKDAANAKSNQQNLGTIK 425


>gi|321259241|ref|XP_003194341.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           gattii WM276]
 gi|317460812|gb|ADV22554.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus gattii WM276]
          Length = 863

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/469 (66%), Positives = 385/469 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWIPD FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D +GE+F+ LY+ YE +GK  + + A+KLWFAIL++Q ETG PY+ YKDA N
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERQGKGRKTIKAQKLWFAILEAQTETGVPYICYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTIK SNLCTEI+EY+S DEVAVCNLAS+AL  +++   + Y+F KL ++ K
Sbjct: 415 SKSNQKHLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNL+ +I  N+YPV EARNSNMRHRP+G+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 475 VVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSLEARELNIQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A   G Y++YEGSP+S+GILQYDMWG  PTDLWDW  LK KIA+H
Sbjct: 535 FETIYHAALEASCELAEEQGTYESYEGSPLSKGILQYDMWGRVPTDLWDWTELKAKIAQH 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTS +Y+RRVLSG+FQVV   LLRDL+ L LW
Sbjct: 595 GVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK  +I   GSIQ I  IP  LK +Y+TVWEI QK V+D+AADRGAFIDQSQSLNI+
Sbjct: 655 DDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           ++  ++ +++SMHF+GWK GLKTG YYLRT+P+ANAIQFTID + +  A
Sbjct: 715 LSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTIDASTLKTA 763



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/195 (68%), Positives = 159/195 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG  PTDLWDW  LK KIA+HGVRNSLL+APMPTAST+QILG NE FEPYTS +Y
Sbjct: 569 LQYDMWGRVPTDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSG+FQVV   LLRDL+ L LWDDNMK  +I   GSIQ I  IP  LK +Y+TVWE
Sbjct: 629 ARRVLSGDFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFIDQSQSLNI+++  ++ +++SMHF+GWK GLKTG YYLRT+P+A
Sbjct: 689 ISQKAVIDLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSA 748

Query: 949 NAIQFTIDKTKMANA 963
           NAIQFTID + +  A
Sbjct: 749 NAIQFTIDASTLKTA 763



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWIPD FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D +GE+F+ LY+ YE +G
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERQG 380



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ ALEASCE+A   G Y++YEGSP+S
Sbjct: 506 LGVQGLADAFMALRMPFDSLEARELNIQIFETIYHAALEASCELAEEQGTYESYEGSPLS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWG  PTDLWDW  LK     +G++
Sbjct: 566 KGILQYDMWGRVPTDLWDWTELKAKIAQHGVR 597



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E + ++Q ++Q    G+T  +L + AA +  A +      +AIL ++I            
Sbjct: 37  EPAEITQKVVQGIHAGITTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN-------- 87

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +    V+ +L+  VN +TG  +PMI D+ Y+++M N D L+SAIIYDRDF YN+
Sbjct: 88  LHKETKKVFSAVVHDLHAWVNPKTGKHSPMIDDEVYKVVMDNKDILDSAIIYDRDFAYNY 147

Query: 767 FGFK 770
           FGFK
Sbjct: 148 FGFK 151



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL++Q ETG PY+ YKDA N KSNQ++L  I+
Sbjct: 390 KLWFAILEAQTETGVPYICYKDAANSKSNQKHLGTIK 426


>gi|424842990|ref|ZP_18267615.1| ribonucleoside-diphosphate reductase, alpha subunit [Saprospira
           grandis DSM 2844]
 gi|395321188|gb|EJF54109.1| ribonucleoside-diphosphate reductase, alpha subunit [Saprospira
           grandis DSM 2844]
          Length = 807

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/508 (61%), Positives = 401/508 (78%), Gaps = 6/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RVE DA+W+LMC
Sbjct: 297 RKGAFAIYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMQRVEQDAEWTLMC 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL DS+GE+F+  Y  +EAEGK  + + AR+LW  IL+SQIETGTPYMLYKD  N
Sbjct: 357 PNECPGLYDSYGEEFEQRYLAFEAEGKGRQTIKARELWMKILESQIETGTPYMLYKDHAN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLG I+ SNLCTEI+EY+S DEVAVCNLASIAL+ ++   D  Y+F +L +V +
Sbjct: 417 RKSNQKNLGVIRSSNLCTEIMEYSSPDEVAVCNLASIALSKFVTE-DGQYDFQRLYEVTR 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID+N+YP++EA+NSNMRHRP+GIGVQGLAD F+ +RLPF+  E+R LN+ I
Sbjct: 476 IVTRNLNKVIDINYYPIQEAKNSNMRHRPVGIGVQGLADAFLLLRLPFESEEARQLNRDI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+  SC++A  +G Y +YEGSP+SQG  Q+D+W VTP+D WDW AL++++  H
Sbjct: 536 FETIYFAAMSESCQMAKEEGAYSSYEGSPISQGKFQFDLWDVTPSDRWDWEALRQEVLAH 595

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR LSGE+ VVN HLL+DL+E G W
Sbjct: 596 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRTLSGEYVVVNKHLLKDLIERGYW 655

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K+ LI  NGS+Q+IEG+PQ++K+LYKT +EI Q+ ++DM+ADRGAFI QSQSLN++
Sbjct: 656 TQELKEMLIAANGSVQNIEGLPQEIKELYKTAYEIKQRAIIDMSADRGAFICQSQSLNLF 715

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-----KTKMANAMASKDA 565
           +   N+AK++SMHFH WK GLKTGMYYLR+K A + I+FT+      K    N  +++  
Sbjct: 716 VESPNFAKLTSMHFHAWKRGLKTGMYYLRSKAAVDPIKFTLSAKYQQKFVGQNGGSNQAL 775

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCI 593
             +   Q ++  +   + C  DN +DC+
Sbjct: 776 AGRTAAQIEEANSQEGLACSIDNPDDCL 803



 Score =  291 bits (744), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/234 (55%), Positives = 176/234 (75%), Gaps = 5/234 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W VTP+D WDW AL++++  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 570 FQFDLWDVTPSDRWDWEALRQEVLAHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR LSGE+ VVN HLL+DL+E G W   +K+ LI  NGS+Q+IEG+PQ++K+LYKT +E
Sbjct: 630 SRRTLSGEYVVVNKHLLKDLIERGYWTQELKEMLIAANGSVQNIEGLPQEIKELYKTAYE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DM+ADRGAFI QSQSLN+++   N+AK++SMHFH WK GLKTGMYYLR+K A 
Sbjct: 690 IKQRAIIDMSADRGAFICQSQSLNLFVESPNFAKLTSMHFHAWKRGLKTGMYYLRSKAAV 749

Query: 949 NAIQFTID-----KTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           + I+FT+      K    N  +++    +   Q ++  +   + C  DN +DCL
Sbjct: 750 DPIKFTLSAKYQQKFVGQNGGSNQALAGRTAAQIEEANSQEGLACSIDNPDDCL 803



 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RVE DA+W+LMC
Sbjct: 297 RKGAFAIYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMQRVEQDAEWTLMC 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL DS+GE+F+  Y  +EAEG
Sbjct: 357 PNECPGLYDSYGEEFEQRYLAFEAEG 382



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +RLPF+  E+R LN+ IFETIY+ A+  SC++A  +G Y +YEGSP+S
Sbjct: 507 IGVQGLADAFLLLRLPFESEEARQLNRDIFETIYFAAMSESCQMAKEEGAYSSYEGSPIS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG  Q+D+W VTP+D WDW AL+   L +G++
Sbjct: 567 QGKFQFDLWDVTPSDRWDWEALRQEVLAHGVR 598



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKD  NRKSNQ+NL VI
Sbjct: 392 ELWMKILESQIETGTPYMLYKDHANRKSNQKNLGVI 427



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GV+ T++ D  A +  A +      +AIL ++I       L+K + N  +     E +  
Sbjct: 54  GVS-TEVLDKLAAETAASMATEHPDYAILAARISVSD---LHKGSSNSFT-----ETMRR 104

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+  ++ +TG    MI+D    ++ K++++L++AI+++RD++Y+FFGFK
Sbjct: 105 LHQYIDPKTGENAQMIADDFMALVEKHSEQLDAAIVHERDYDYDFFGFK 153


>gi|425781620|gb|EKV19574.1| Ribonucleoside-diphosphate reductase [Penicillium digitatum PHI26]
 gi|425782887|gb|EKV20768.1| Ribonucleoside-diphosphate reductase [Penicillium digitatum Pd1]
          Length = 861

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/466 (67%), Positives = 384/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY KYE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYTKYEQEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTFVDSARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++  NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVHNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS +IA + G Y+TY GSPVSQGILQYDMW  TPTDLWDWA+LK KIA+ 
Sbjct: 533 FETIYHGALTASSDIAKKLGTYETYPGSPVSQGILQYDMWDRTPTDLWDWASLKAKIAET 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GS+Q+I  IP  +K LYKTVWEI Q+ +L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSVQNIPNIPADIKALYKTVWEISQRNILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWA+LK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWASLKAKIAETGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I + GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIADGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ +L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRNILQMAADRGAFIDQSQSLNIHLKEPTMGKLTSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY KYE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYTKYEQEG 378



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+GAL AS +IA + G Y+TY GSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSPEARQLNIQIFETIYHGALTASSDIAKKLGTYETYPGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDWA+LK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWASLKAKIAETGVR 595



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GV   +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVGTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS +HYEI+MK+A+ LNSAI+YDRDFNYN+
Sbjct: 86  LHKQTKKQFSMVISDLYHYVNPKNNKPAPMISKQHYEIVMKHAEELNSAIVYDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|401882642|gb|EJT46892.1| ribonucleoside-diphosphate reductase large chain [Trichosporon
           asahii var. asahii CBS 2479]
 gi|406700693|gb|EKD03858.1| ribonucleoside-diphosphate reductase large chain [Trichosporon
           asahii var. asahii CBS 8904]
          Length = 863

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/478 (66%), Positives = 389/478 (81%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADIFDFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D   E+F+ LY+ YE  GK  + + A+KLWFAIL++Q ETG P+MLYKDA N
Sbjct: 355 PAECPGLADVHSEEFEKLYESYERAGKGRKTIKAQKLWFAILEAQTETGGPFMLYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTIK SNLCTEI+EY+S DEVAVCNLASIAL  ++N   KTY+F KL ++ K
Sbjct: 415 RKSNQQHLGTIKSSNLCTEIIEYSSPDEVAVCNLASIALPAFVNFETKTYDFKKLHEITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NL+++I  N+YPV EARNSNMRHRP+G+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 475 VVTRNLDQVITRNYYPVPEARNSNMRHRPVGLGVQGLADTFMALRMPFDSREARQLNLQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A + G Y +YEGSP+SQG +Q D+WGV PTDLWDW  L+  IA+H
Sbjct: 535 FETIYHAALEASCEMAQKLGKYPSYEGSPMSQGKIQPDLWGVEPTDLWDWTELRANIAQH 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTS +YSRRVLSG+F VV   LLRDL+ LG+W
Sbjct: 595 GVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYSRRVLSGDFAVVCPWLLRDLINLGIW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+ MK+ +I + GSIQ I  IP  +K +YKTVWEI QK V+D+AADRGAFIDQSQSLNI+
Sbjct: 655 DEEMKNLIIASGGSIQHIPNIPDDIKAIYKTVWEISQKAVIDLAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +A  ++++++SMHF+GWK GLKTG YYLRT+PAANAIQFTID   +  A A++   S+
Sbjct: 715 LANPSFSQLTSMHFYGWKRGLKTGAYYLRTRPAANAIQFTIDAKTLKQAKANESQGSR 772



 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 163/201 (81%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WGV PTDLWDW  L+  IA+HGVRNSLL+APMPTAST+QILG NE FEPYTS +YSRR
Sbjct: 572 DLWGVEPTDLWDWTELRANIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYSRR 631

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSG+F VV   LLRDL+ LG+WD+ MK+ +I + GSIQ I  IP  +K +YKTVWEI Q
Sbjct: 632 VLSGDFAVVCPWLLRDLINLGIWDEEMKNLIIASGGSIQHIPNIPDDIKAIYKTVWEISQ 691

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K V+D+AADRGAFIDQSQSLNI++A  ++++++SMHF+GWK GLKTG YYLRT+PAANAI
Sbjct: 692 KAVIDLAADRGAFIDQSQSLNIHLANPSFSQLTSMHFYGWKRGLKTGAYYLRTRPAANAI 751

Query: 952 QFTIDKTKMANAMASKDTRSQ 972
           QFTID   +  A A++   S+
Sbjct: 752 QFTIDAKTLKQAKANESQGSR 772



 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADIFDFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D   E+F+ LY+ YE  G
Sbjct: 355 PAECPGLADVHSEEFEKLYESYERAG 380



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ ALEASCE+A + G Y +YEGSP+S
Sbjct: 506 LGVQGLADTFMALRMPFDSREARQLNLQIFETIYHAALEASCEMAQKLGKYPSYEGSPMS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG +Q D+WGV PTDLWDW  L+     +G++
Sbjct: 566 QGKIQPDLWGVEPTDLWDWTELRANIAQHGVR 597



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI  Y    +T  +L + AA    AL      W AIL ++I             +++
Sbjct: 45  VVQGIHPY----ITTVELDNLAAETAAALSPMHPDW-AILAARIAISN--------LHKE 91

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+LY   N +TG   PM+S++ Y I+ KN + L++AIIYDRDF YN+FGFK
Sbjct: 92  TKKQFSQVIEDLYQWHNPKTGKHAPMVSEEVYNIVSKNKEALDAAIIYDRDFAYNYFGFK 151



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL++Q ETG P+MLYKDA NRKSNQQ+L  I+
Sbjct: 390 KLWFAILEAQTETGGPFMLYKDAANRKSNQQHLGTIK 426


>gi|156101822|ref|XP_001616604.1| ribonucleoside-diphosphate reductase large chain [Plasmodium vivax
           Sal-1]
 gi|148805478|gb|EDL46877.1| ribonucleoside-diphosphate reductase large chain, putative
           [Plasmodium vivax]
          Length = 848

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/518 (62%), Positives = 402/518 (77%), Gaps = 12/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+SWGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 392 PNECPGLSESWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 451

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   + +NF KL ++ K
Sbjct: 452 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDVEKREFNFKKLYEITK 511

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL++II+ N+YPVEEA+ SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 512 IITRNLDQIIERNYYPVEEAKRSNKRHRPIGIGVQGLADTFMLLRYPYESDSAKELNKRI 571

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YYGALE S E+A   GPY+TY+GSP SQGILQ+DMW V      WDW  LK KI K
Sbjct: 572 FETMYYGALEMSMELAQLYGPYETYQGSPASQGILQFDMWNVKVDKKYWDWDELKAKIKK 631

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 632 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 691

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGS+Q I  IP  LK+LYKTVWEI QK ++DMAADRGAFIDQSQSLNI
Sbjct: 692 WDEDMKQQLIAHNGSVQYISEIPADLKELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNI 751

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA   K+A    
Sbjct: 752 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAAKMKNAEPVA 811

Query: 567 -----SQEEIQADQEQAMAAMIC--RRDNKEDCIGVQG 597
                S+E I  D       ++C  RR+N + C+   G
Sbjct: 812 ITREVSRETISTDS-TVTQNVVCPLRRNNDDQCLMCSG 848



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 148/240 (61%), Positives = 177/240 (73%), Gaps = 12/240 (5%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V      WDW  LK KI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 606 LQFDMWNVKVDKKYWDWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 665

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGS+Q I  IP  LK+LYKTVW
Sbjct: 666 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTVW 725

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGAFIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 726 EIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 785

Query: 948 ANAIQFTIDK------TKMANAMASKDTR--SQEEIQADQEQAMAAMIC--RRDNKEDCL 997
            +AI+FT+D        KM NA     TR  S+E I  D       ++C  RR+N + CL
Sbjct: 786 TDAIKFTVDTQVAKNAAKMKNAEPVAITREVSRETISTDS-TVTQNVVCPLRRNNDDQCL 844



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS+SWGE+F+ LY KYE E +
Sbjct: 392 PNECPGLSESWGEEFEKLYTKYEEENM 418



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 71/104 (68%), Gaps = 4/104 (3%)

Query: 585 RRDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
           +R NK      IGVQGLAD F+ +R P++ + ++ LNK+IFET+YYGALE S E+A   G
Sbjct: 532 KRSNKRHRPIGIGVQGLADTFMLLRYPYESDSAKELNKRIFETMYYGALEMSMELAQLYG 591

Query: 642 PYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           PY+TY+GSP SQGILQ+DMW V      WDW  LK     +GL+
Sbjct: 592 PYETYQGSPASQGILQFDMWNVKVDKKYWDWDELKAKIKKHGLR 635



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKD+CN KSNQ+NL  I+
Sbjct: 423 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 463



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 69  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 123

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    EV E LY   +   G    +IS + YE ++++ DRLN  I Y R
Sbjct: 124 ----DNLHKNTSDDIGEVAEALYKYTDVR-GRPASLISKEVYEFMIEHKDRLNKEIDYTR 178

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 179 DFNYDYFGFK 188


>gi|145256649|ref|XP_001401473.1| ribonucleoside-diphosphate reductase large chain [Aspergillus niger
           CBS 513.88]
 gi|134058380|emb|CAK38565.1| unnamed protein product [Aspergillus niger]
 gi|350632026|gb|EHA20394.1| hypothetical protein ASPNIDRAFT_57102 [Aspergillus niger ATCC 1015]
          Length = 865

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/466 (67%), Positives = 384/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY+KYE EG+  R + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYEKYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L AS ++A   G Y+TYEGSPVSQGILQYDMW  TPTDLWDWAALK KIA+ 
Sbjct: 533 FETIYHAGLTASSDLAKEFGTYETYEGSPVSQGILQYDMWDRTPTDLWDWAALKAKIAQT 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+T+L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  293 bits (750), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWAALK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWAALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T+L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRTILQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYEKYEKEG 378



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+  L AS ++A   G Y+TYEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHAGLTASSDLAKEFGTYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDWAALK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWAALKAKIAQTGVR 595



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEIIMK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYVNPKNNQPAPMISKETYEIIMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|58267480|ref|XP_570896.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           neoformans var. neoformans JEC21]
 gi|134112167|ref|XP_775272.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257927|gb|EAL20625.1| hypothetical protein CNBE3330 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57227130|gb|AAW43589.1| ribonucleoside-diphosphate reductase large chain, putative
           [Cryptococcus neoformans var. neoformans JEC21]
          Length = 863

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/469 (66%), Positives = 384/469 (81%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWIPD FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D +GE+F+ LY+ YE +GK  + + A+KLWFAIL++Q ETG PY+ YKDA N
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERKGKGRKTIKAQKLWFAILEAQTETGVPYICYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+ LGTIK SNLCTEI+EY+S DEVAVCNLAS+AL  +++   + Y+F KL ++ K
Sbjct: 415 SKSNQKQLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNL+ +I  N+YPV EARNSNMRHRP+G+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 475 VVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSPEARELNIQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A   G Y++YEGSP+S+GILQYDMWG  PTDLWDW  LK KIA+H
Sbjct: 535 FETIYHAALEASCELAEEFGTYESYEGSPISKGILQYDMWGRVPTDLWDWTELKAKIAQH 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTS +Y+RRVLSG+FQVV   LLRDL+ L LW
Sbjct: 595 GVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK  +I   GSIQ I  IP  LK +Y+TVWEI QK V+D+AADRGAFIDQSQSLNI+
Sbjct: 655 DDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           ++  ++ +++SMHF+GWK GLKTG YYLRT+P+ANAIQFT+D + +  A
Sbjct: 715 LSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTVDASTLKTA 763



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 159/195 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG  PTDLWDW  LK KIA+HGVRNSLL+APMPTAST+QILG NE FEPYTS +Y
Sbjct: 569 LQYDMWGRVPTDLWDWTELKAKIAQHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSG+FQVV   LLRDL+ L LWDDNMK  +I   GSIQ I  IP  LK +Y+TVWE
Sbjct: 629 ARRVLSGDFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFIDQSQSLNI+++  ++ +++SMHF+GWK GLKTG YYLRT+P+A
Sbjct: 689 ISQKAVIDLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSA 748

Query: 949 NAIQFTIDKTKMANA 963
           NAIQFT+D + +  A
Sbjct: 749 NAIQFTVDASTLKTA 763



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWIPD FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDGDWTLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D +GE+F+ LY+ YE +G
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERKG 380



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ ALEASCE+A   G Y++YEGSP+S
Sbjct: 506 LGVQGLADAFMALRMPFDSPEARELNIQIFETIYHAALEASCELAEEFGTYESYEGSPIS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWG  PTDLWDW  LK     +G++
Sbjct: 566 KGILQYDMWGRVPTDLWDWTELKAKIAQHGVR 597



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E + ++Q ++Q    G+T  +L + AA +  A +      +AIL ++I            
Sbjct: 37  EPAEITQKVVQGIHAGITTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN-------- 87

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +    V+ +L+  VN +TG  +PMI D  Y+I+M N D L+SAIIYDRDF YN+
Sbjct: 88  LHKETKKVFSAVVHDLHAWVNPKTGKHSPMIDDDVYKIVMDNKDILDSAIIYDRDFAYNY 147

Query: 767 FGFK 770
           FGFK
Sbjct: 148 FGFK 151



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL++Q ETG PY+ YKDA N KSNQ+ L  I+
Sbjct: 390 KLWFAILEAQTETGVPYICYKDAANSKSNQKQLGTIK 426


>gi|238491914|ref|XP_002377194.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
 gi|317146285|ref|XP_001821413.2| ribonucleoside-diphosphate reductase large chain [Aspergillus
           oryzae RIB40]
 gi|220697607|gb|EED53948.1| ribonucleotide reductase large subunit Rnr1, putative [Aspergillus
           flavus NRRL3357]
 gi|391869144|gb|EIT78349.1| ribonucleotide reductase, alpha subunit [Aspergillus oryzae 3.042]
          Length = 854

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/484 (65%), Positives = 393/484 (81%), Gaps = 7/484 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYERYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+NSNMRHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKNSNMRHRPIALGVNGLADAFLALRLPFDSPEAKQLNTQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS ++A   G Y++YEGSPVSQGILQYDMW  TPTDLWDW ALK KIA+ 
Sbjct: 533 FETIYHGALTASSDLAKDFGTYESYEGSPVSQGILQYDMWDRTPTDLWDWDALKAKIAQT 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+++L MAADRGA+IDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWEISQRSILQMAADRGAYIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK-------TKMANAMASK 563
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+       T +A A AS 
Sbjct: 713 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEALKVADTNVARANASF 772

Query: 564 DARS 567
             R+
Sbjct: 773 RKRA 776



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 166/210 (79%), Gaps = 7/210 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPADIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+++L MAADRGA+IDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRSILQMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDK-------TKMANAMASKDTRS 971
             IQFT+D+       T +A A AS   R+
Sbjct: 747 APIQFTVDQEALKVADTNVARANASFRKRA 776



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYERYEKEG 378



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+GAL AS ++A   G Y++YEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSPEAKQLNTQIFETIYHGALTASSDLAKDFGTYESYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW ALK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDALKAKIAQTGVR 595



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTTTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ +N +     PMIS + YEI+MK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYINPKNKKPAPMISKETYEIVMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423


>gi|260947674|ref|XP_002618134.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
 gi|238848006|gb|EEQ37470.1| hypothetical protein CLUG_01593 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/471 (66%), Positives = 389/471 (82%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFAIYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY+KYE EG+    V A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEREGRGRSTVKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
           +K+NQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  ++  + +   YNF KL +V
Sbjct: 413 KKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDASSSWYNFDKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN+IID NFYPVEEAR SNMR+RPI +GVQGLAD F+ +RLPFD  E++ LN 
Sbjct: 473 TKVVTRNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMSLRLPFDSQEAKELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +GPY+TYEGSP S+G+LQYD+W   P++LWDW  LK+ +A
Sbjct: 533 QIFETIYHAAVEASIELAQEEGPYETYEGSPASKGLLQYDLWDRKPSELWDWDTLKQNLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN H+L+DLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPHMLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+DNMK+ +I NNGSIQ +  +P ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 IWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           I++ E    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D+   + A
Sbjct: 713 IHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDQNSASAA 763



 Score =  296 bits (758), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   P++LWDW  LK+ +AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQYDLWDRKPSELWDWDTLKQNLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN H+L+DLV+LG+W+DNMK+ +I NNGSIQ +  +P ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPHMLKDLVDLGIWNDNMKNNIIANNGSIQSLPNVPDEIKRLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ E    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D+   + A
Sbjct: 749 AAIQFTVDQNSASAA 763



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFAIYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFEALYEKYEREG 378



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 73/97 (75%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+ A+EAS E+A  +GPY+TYE
Sbjct: 501 NRPIALGVQGLADAFMSLRLPFDSQEAKELNIQIFETIYHAAVEASIELAQEEGPYETYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+G+LQYD+W   P++LWDW  LK     +GL+
Sbjct: 561 GSPASKGLLQYDLWDRKPSELWDWDTLKQNLAKHGLR 597



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GVT  +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  VTQRVISGVYHGVTTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V + LY  +N +T   +PMIS++ Y+II +NAD LNSAI+YDRDFNYN+FGFK
Sbjct: 90  TTKQFSQVAKILYEYINPKTDLHSPMISEETYKIICENADELNSAIVYDRDFNYNYFGFK 149



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 37/43 (86%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           + V   KLW++IL++Q ETGTP+MLYKDACN+K+NQ+NL +I+
Sbjct: 382 STVKAQKLWYSILEAQTETGTPFMLYKDACNKKTNQKNLGIIK 424


>gi|68525530|ref|XP_723625.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii 17XNL]
 gi|23477980|gb|EAA15190.1| ribonucleoside-diphosphate reductase large chain [Plasmodium yoelii
           yoelii]
          Length = 847

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/516 (62%), Positives = 400/516 (77%), Gaps = 9/516 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFMKRVKENRNWTLMC 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+SWGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKDACN
Sbjct: 392 PNECPGLSESWGEEFEKLYTKYEEENLGKKTVLAQDLWFAILQSQIETGVPYMLYKDACN 451

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K ++F KL D+ K
Sbjct: 452 SKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDREKKEFDFKKLYDITK 511

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YP++EA  SN RHRPIGIGVQGLAD F+ +R P++ +E++ LNK+I
Sbjct: 512 IITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFMLLRYPYESDEAKELNKRI 571

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A   GPY++Y+GSP SQGILQ+DMW V      WDW  LK+KI+ 
Sbjct: 572 FETMYYAALEMSVELAQIHGPYESYKGSPASQGILQFDMWNVKVDNKYWDWDLLKKKISM 631

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 632 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 691

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGS+Q I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 692 WDEDMKQQLIAHNGSVQYISEIPADLKELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNI 751

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID--------KTKMANAMA 561
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D        K K A+ +A
Sbjct: 752 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAEKLKNADGVA 811

Query: 562 SKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E I  +      A   RR+N E C+   G
Sbjct: 812 ITREVSRETISTESTVTQNACPLRRNNDEPCLMCSG 847



 Score =  289 bits (740), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 175/238 (73%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V      WDW  LK+KI+ HG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 606 LQFDMWNVKVDNKYWDWDLLKKKISMHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 665

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGS+Q I  IP  LK+LYKTVW
Sbjct: 666 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPADLKELYKTVW 725

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 726 EIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 785

Query: 948 ANAIQFTID--------KTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            +AI+FT+D        K K A+ +A     S+E I  +      A   RR+N E CL
Sbjct: 786 TDAIKFTVDTQVAKNAEKLKNADGVAITREVSRETISTESTVTQNACPLRRNNDEPCL 843



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFMKRVKENRNWTLMC 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS+SWGE+F+ LY KYE E L
Sbjct: 392 PNECPGLSESWGEEFEKLYTKYEEENL 418



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ +E++ LNK+IFET+YY ALE S E+A   GPY++Y+GSP S
Sbjct: 543 IGVQGLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQIHGPYESYKGSPAS 602

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW V      WDW  LK    ++GL+
Sbjct: 603 QGILQFDMWNVKVDNKYWDWDLLKKKISMHGLR 635



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 423 VLAQDLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIK 463



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 69  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 123

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    +V E LY+  +   G    +IS + Y+ IM++ DRLN  I Y R
Sbjct: 124 ----DNLHKNTSDDIAKVAEALYSYKDIR-GRSASLISKEVYDFIMEHKDRLNKEIDYTR 178

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 179 DFNYDYFGFK 188


>gi|397567645|gb|EJK45703.1| hypothetical protein THAOC_35666, partial [Thalassiosira oceanica]
          Length = 872

 Score =  687 bits (1773), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/518 (61%), Positives = 408/518 (78%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A Y+EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM RV+++  W+LMC
Sbjct: 351 RKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMERVQTNGDWTLMC 410

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C+GL   WG +F  LY+KYEAEGK  + + A++LWFAILDSQ+ETGTPYMLYKD CN
Sbjct: 411 PNECKGLDTCWGAEFKALYEKYEAEGKGRKTIKAQQLWFAILDSQVETGTPYMLYKDHCN 470

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD-----KTYNFTKL 265
            KSNQQNLGTIKCSNLCTEIVEYT  DE+AVCNLASI+L+ ++ PAD      +++  +L
Sbjct: 471 GKSNQQNLGTIKCSNLCTEIVEYTCPDEIAVCNLASISLSKFVTPADGFGGDASFDLDQL 530

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
             ++K+VTKNLN++ID NFYPVEEAR SN RHRPIGIGVQGLAD F  M+LPF+  ++R 
Sbjct: 531 MYISKVVTKNLNRVIDNNFYPVEEARRSNTRHRPIGIGVQGLADAFQMMKLPFESEQARK 590

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LNK IFETIY+GA EAS E+A  +G Y+T+ GSP S+G LQ+DMWGVTP+D WDWA LKE
Sbjct: 591 LNKDIFETIYFGACEASMELAEAEGHYETFPGSPASEGRLQFDMWGVTPSDRWDWAGLKE 650

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           KIA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF VVN HLLRDL 
Sbjct: 651 KIARHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKHLLRDLT 710

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
             G W + +++++I + GSIQ+++ +P++++D+YKTVWEIPQ+ +LDMAADRGAFI QSQ
Sbjct: 711 ANGYWTERVRNKIIADGGSIQNVQELPKEIRDIYKTVWEIPQRAILDMAADRGAFICQSQ 770

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA---NAMAS 562
           S+N+++ E N +K++SMHF+ WK GLKTGMYYLRT+P A+AIQFT+++  +A   NA   
Sbjct: 771 SMNVHIGEPNTSKLTSMHFYAWKKGLKTGMYYLRTRPKADAIQFTVNQEMLAETNNAAEK 830

Query: 563 ---KDARSQEEIQADQEQAMAAM----ICRRDNKEDCI 593
              K A S     A+ ++   A     +  +D++E+C+
Sbjct: 831 GKMKKAESPTSASANLDKPTVASKFAGLQMKDDEEECL 868



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 135/239 (56%), Positives = 185/239 (77%), Gaps = 10/239 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTP+D WDWA LKEKIA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y
Sbjct: 630 LQFDMWGVTPSDRWDWAGLKEKIARHGMRNSLLMAPMPTASTAQILGNNESTEPFTSNMY 689

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN HLLRDL   G W + +++++I + GSIQ+++ +P++++D+YKTVWE
Sbjct: 690 NRRVLAGEFTVVNKHLLRDLTANGYWTERVRNKIIADGGSIQNVQELPKEIRDIYKTVWE 749

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LDMAADRGAFI QSQS+N+++ E N +K++SMHF+ WK GLKTGMYYLRT+P A
Sbjct: 750 IPQRAILDMAADRGAFICQSQSMNVHIGEPNTSKLTSMHFYAWKKGLKTGMYYLRTRPKA 809

Query: 949 NAIQFTIDKTKMA---NAM-------ASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AIQFT+++  +A   NA        A   T +   +      +  A +  +D++E+CL
Sbjct: 810 DAIQFTVNQEMLAETNNAAEKGKMKKAESPTSASANLDKPTVASKFAGLQMKDDEEECL 868



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A Y+EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM RV+++  W+LMC
Sbjct: 351 RKGSIAAYIEPWHADIFAFLDLRKNHGNEMERARDLFYALWIPDLFMERVQTNGDWTLMC 410

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C+GL   WG +F  LY+KYEAEG
Sbjct: 411 PNECKGLDTCWGAEFKALYEKYEAEG 436



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 91/140 (65%), Gaps = 5/140 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  M+LPF+  ++R LNK IFETIY+GA EAS E+A  +G Y+T+ GSP S
Sbjct: 567 IGVQGLADAFQMMKLPFESEQARKLNKDIFETIYFGACEASMELAEAEGHYETFPGSPAS 626

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK-- 710
           +G LQ+DMWGVTP+D WDWA LK     +G++   ++L + + T +   +  +  + +  
Sbjct: 627 EGRLQFDMWGVTPSDRWDWAGLKEKIARHGMR--NSLLMAPMPTASTAQILGNNESTEPF 684

Query: 711 -SNQQNLEVIEELYNMVNKE 729
            SN  N  V+   + +VNK 
Sbjct: 685 TSNMYNRRVLAGEFTVVNKH 704



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQ+ETGTPYMLYKD CN KSNQQNL  I+
Sbjct: 446 QLWFAILDSQVETGTPYMLYKDHCNGKSNQQNLGTIK 482



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
            P Q    + +SQ ++Q    GVT  +L + AA +  A        +A+L ++IE     
Sbjct: 81  APGQFVNEAVISQKVIQGVYPGVTTVELDELAA-QTAASFATQHPDYAVLAARIEVSN-- 137

Query: 701 MLYKDACNRKSNQQNLEVIEELY-NMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
            L+K+   + S  +  E+  + + N  + +TG   P++S++ + ++M N D L+ AI++D
Sbjct: 138 -LHKETEKQFSKVRPTEICGDCFRNYTHPKTGEPAPLVSEEVHSVVMANRDVLDGAILHD 196

Query: 760 RDFNYNFFGFK 770
           RDF +++FGFK
Sbjct: 197 RDFEFDYFGFK 207


>gi|15227096|ref|NP_179770.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
           thaliana]
 gi|56749666|sp|Q9SJ20.1|RIR1_ARATH RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleoside-diphosphate reductase R1
           subunit; Short=AtRNR1
 gi|4417273|gb|AAD20398.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|14334814|gb|AAK59585.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|30793895|gb|AAP40400.1| putative ribonucleoside-diphosphate reductase large subunit
           [Arabidopsis thaliana]
 gi|330252128|gb|AEC07222.1| ribonucleoside-diphosphate reductase subunit M1 [Arabidopsis
           thaliana]
          Length = 816

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/524 (62%), Positives = 402/524 (76%), Gaps = 23/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG +F+ LY KYE EGK  + V A++LW+ IL SQ+ETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++     P D         
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   VT NLNKIIDVN+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q+TV+D
Sbjct: 653 FVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KT--KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
               K   ++A  D   +EE   D E  +A M+C   N E+C+ 
Sbjct: 773 TAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECLA 813



 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 177/228 (77%), Gaps = 5/228 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVIPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +TV+DMAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI
Sbjct: 708 RTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D    K   ++A  D   +EE   D E  +A M+C   N E+CL
Sbjct: 768 KFTVDTAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECL 812



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG +F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREG 378



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 15/177 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D WDWA L+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVIPSDRWDWAVLRDMISKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
            SN  +  V+   + +VNK       + G  TP + +K   +I +N   +N A I D
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNK---LINENGSIVNVAEIPD 693



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I++++  VN  +G ++P+I+D  +EIIM+NA RL+S IIYDRDF Y++FGFK
Sbjct: 96  ETIKDMFYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFK 149



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V   +LW+ IL SQ+ETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIK 424


>gi|410027778|ref|ZP_11277614.1| ribonucleoside-diphosphate reductase subunit alpha [Marinilabilia
           sp. AK2]
          Length = 799

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/506 (62%), Positives = 399/506 (78%), Gaps = 8/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAVYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D  GE+F+ LY+KYE EGK    + A++LWF IL+SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLADCHGEEFEKLYEKYEREGKARETIKAQELWFEILESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  ++       K ++  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPKFVATGKDGKKYFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+ T+NLNK+IDVN+YPVEEAR SN RHRPIG+GVQGLAD FI +R+PFD +E++ LN
Sbjct: 473 VTKVATRNLNKVIDVNYYPVEEARRSNFRHRPIGLGVQGLADAFIMLRMPFDSDEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIY+ ++E S E+A   G Y+TYEGSP S+G  Q+D+WGVTP +  W W  LKEK
Sbjct: 533 EDIFETIYFASMETSMELAKIQGTYETYEGSPASKGQFQFDLWGVTPKSGRWAWNELKEK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL+RDL+ 
Sbjct: 593 VKKYGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMRDLIN 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+DNMK++LI  NGS+Q+I GIPQ +KD+YKTVWEI Q+ ++DMAADRGA+I QSQS
Sbjct: 653 LGLWNDNMKNRLIAANGSVQNIPGIPQNIKDIYKTVWEISQRIIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N++M + N+ K++SMHF+ WK GLKTGMYYLR++ AA+AIQFT+DK+    A+ +    
Sbjct: 713 MNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIQFTVDKS----ALETDKTA 768

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
           +   +   + Q   A+ C  D+ E C
Sbjct: 769 TATTVDTSRSQKQDAIACSLDDPEGC 794



 Score =  304 bits (779), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/229 (60%), Positives = 181/229 (79%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+WGVTP +  W W  LKEK+ K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDLWGVTPKSGRWAWNELKEKVKKYGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL+RDL+ LGLW+DNMK++LI  NGS+Q+I GIPQ +KD+YKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMRDLINLGLWNDNMKNRLIAANGSVQNIPGIPQNIKDIYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ ++DMAADRGA+I QSQS+N++M + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 EISQRIIIDMAADRGAYICQSQSMNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A+AIQFT+DK+    A+ +  T +   +   + Q   A+ C  D+ E C
Sbjct: 750 ASAIQFTVDKS----ALETDKTATATTVDTSRSQKQDAIACSLDDPEGC 794



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAVYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D  GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLADCHGEEFEKLYEKYEREG 378



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PFD +E++ LN+ IFETIY+ ++E S E+A   G Y+TYEGSP S
Sbjct: 507 LGVQGLADAFIMLRMPFDSDEAKGLNEDIFETIYFASMETSMELAKIQGTYETYEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G  Q+D+WGVTP +  W W  LK     YGL+
Sbjct: 567 KGQFQFDLWGVTPKSGRWAWNELKEKVKKYGLR 599



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQIETGTPYMLYKDA N+KSNQQNL  I+
Sbjct: 388 ELWFEILESQIETGTPYMLYKDAANKKSNQQNLGTIK 424



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT T+L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTTELDNLAA-EVCASLTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +TG    +I+   Y ++ ++A +L+  I Y RDF+Y++FGFK
Sbjct: 101 LYTHINPKTGDNAALIAPDVYGVVKQHAAKLDEVIDYQRDFDYDYFGFK 149


>gi|393213404|gb|EJC98900.1| hypothetical protein FOMMEDRAFT_128598 [Fomitiporia mediterranea
           MF3/22]
          Length = 868

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/462 (68%), Positives = 386/462 (83%), Gaps = 2/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVESD+ W L C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDSDWPLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WG++F+ L++KYE EG+  R V A+KLW+AI+++Q+ETG P+MLYKD+ N
Sbjct: 354 PNEAPGLHEVWGDEFEALFEKYENEGRAKRTVKAQKLWYAIIEAQVETGGPFMLYKDSAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EY+S DE AVCNLASIAL  +I     TY+F KL DVAK
Sbjct: 414 RKSNQQNLGTIKSSNLCTEIIEYSSPDETAVCNLASIALPSFIR--GSTYDFQKLHDVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YPV+EARNSNMRHRPIGIGVQGLAD F+ +RLPFD  E+R LN +I
Sbjct: 472 VVAFNLNRIIDVNYYPVQEARNSNMRHRPIGIGVQGLADTFMALRLPFDSPEARELNVKI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE+S +IAA DGPY +++GSP  QG LQ+D+WGV P+DLWDW +LKEKIA+ 
Sbjct: 532 FETIYHAALESSSDIAAVDGPYSSWKGSPAEQGKLQFDLWGVEPSDLWDWKSLKEKIAQT 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL++PMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQVV   LLR+LVE GLW
Sbjct: 592 GLRNSLLLSPMPTASTSQILGFNECFEPYTSNIYTRRVLSGEFQVVCPWLLRELVERGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+ M++ +I +NGS+Q+I  IP  +K +YKTVWE+ QK ++DMAADRGAFI QSQSLNI+
Sbjct: 652 DEQMRNLIIAHNGSVQNIPSIPDDVKAIYKTVWELSQKKIIDMAADRGAFICQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +      +M+SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D
Sbjct: 712 LQSPTNGQMTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVD 753



 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 128/188 (68%), Positives = 159/188 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV P+DLWDW +LKEKIA+ G+RNSLL++PMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 LQFDLWGVEPSDLWDWKSLKEKIAQTGLRNSLLLSPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVV   LLR+LVE GLWD+ M++ +I +NGS+Q+I  IP  +K +YKTVWE
Sbjct: 626 TRRVLSGEFQVVCPWLLRELVERGLWDEQMRNLIIAHNGSVQNIPSIPDDVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADRGAFI QSQSLNI++      +M+SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 LSQKKIIDMAADRGAFICQSQSLNIHLQSPTNGQMTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTID 956
            AIQFT+D
Sbjct: 746 QAIQFTVD 753



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVESD+ W L C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVESDSDWPLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WG++F+ L++KYE EG
Sbjct: 354 PNEAPGLHEVWGDEFEALFEKYENEG 379



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +RLPFD  E+R LN +IFETIY+ ALE+S +IAA DGPY +++GSP  
Sbjct: 503 IGVQGLADTFMALRLPFDSPEARELNVKIFETIYHAALESSSDIAAVDGPYSSWKGSPAE 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WGV P+DLWDW +LK      GL+
Sbjct: 563 QGKLQFDLWGVEPSDLWDWKSLKEKIAQTGLR 594



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT  +L + AA +  A +      +AIL ++I       L+K+   + 
Sbjct: 44  VVAGVYQ----GVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN---LHKETKKKF 95

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S      VI +LYN VN   G    MIS + YE +  NA+ L+SAI+Y+RDF+Y +FGFK
Sbjct: 96  S-----AVISDLYNYVNPRNGRPAGMISKETYETVRDNAELLDSAIVYERDFHYQYFGFK 150



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AI+++Q+ETG P+MLYKD+ NRKSNQQNL  I+
Sbjct: 385 VKAQKLWYAIIEAQVETGGPFMLYKDSANRKSNQQNLGTIK 425


>gi|3661603|gb|AAC61773.1| ribonucleoside-diphosphate reductase large subunit [Arabidopsis
           thaliana]
          Length = 816

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/524 (62%), Positives = 402/524 (76%), Gaps = 23/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG +F+ LY KYE EGK  + V A++LW+ IL SQ+ETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++     P D         
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   VT NLNKIIDVN+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q+TV+D
Sbjct: 653 FVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KT--KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
               K   ++A  D   +EE   D E  +A M+C   N E+C+ 
Sbjct: 773 TAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECLA 813



 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 140/228 (61%), Positives = 177/228 (77%), Gaps = 5/228 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVIPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +TV+DMAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI
Sbjct: 708 RTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D    K   ++A  D   +EE   D E  +A M+C   N E+CL
Sbjct: 768 KFTVDTAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECL 812



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG +F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREG 378



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 15/177 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D WDWA L+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVIPSDRWDWAVLRDMISKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
            SN  +  V+   + +VNK       + G  TP + +K   +I +N   +N A I D
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNK---LINENGSIVNVAEIPD 693



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I++++  VN  +G ++P+I+D  +EIIM+NA RL+S IIYDRDF Y++FGFK
Sbjct: 96  ETIKDMFYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFK 149



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V   +LW+ IL SQ+ETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIK 424


>gi|67528364|ref|XP_661984.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|40741107|gb|EAA60297.1| RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain
           (Ribonucleotide reductase large subunit) [Aspergillus
           nidulans FGSC A4]
 gi|259482810|tpe|CBF77645.1| TPA: ribonucleoside-diphosphate reductase large chain (Eurofung)
           [Aspergillus nidulans FGSC A4]
          Length = 865

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 307 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY++YE EG+  R + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 367 PNEAPGLADVYGDEFDALYEQYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACN 426

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  +++ +   Y+F KL +V +
Sbjct: 427 KKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTFVDASRGEYDFGKLHEVVQ 486

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E++ LN QI
Sbjct: 487 VLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEAKQLNIQI 546

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS  +A  DGPY++YEGSPVSQGILQYDMW  TPTDLWDW ALK KIA+ 
Sbjct: 547 FETIYHAALTASSNLAKEDGPYESYEGSPVSQGILQYDMWERTPTDLWDWDALKAKIAQT 606

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 607 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 666

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+ +L+MAADRGA+IDQSQSLNI+
Sbjct: 667 SDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWEISQRRILEMAADRGAYIDQSQSLNIH 726

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 727 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 772



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/192 (69%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW ALK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 581 LQYDMWERTPTDLWDWDALKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 640

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 641 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPDDIKALYKTVWE 700

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ +L+MAADRGA+IDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 701 ISQRRILEMAADRGAYIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 760

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 761 APIQFTVDQEQL 772



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 307 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY++YE EG
Sbjct: 367 PNEAPGLADVYGDEFDALYEQYEKEG 392



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E++ LN QIFETIY+ AL AS  +A  DGPY++YEGSPV
Sbjct: 517 ALGVNGLADAFLALRLPFDSAEAKQLNIQIFETIYHAALTASSNLAKEDGPYESYEGSPV 576

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW ALK      G++
Sbjct: 577 SQGILQYDMWERTPTDLWDWDALKAKIAQTGVR 609



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 49  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 99

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEI+MK+A+ LNSAI+YDRDFNYNF
Sbjct: 100 LHKQTKKQFSLVISDLYHYVNPKNKKPAPMISKETYEIVMKHAEELNSAIVYDRDFNYNF 159

Query: 767 FGFK 770
           FGFK
Sbjct: 160 FGFK 163



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 402 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 437


>gi|357125146|ref|XP_003564256.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Brachypodium distachyon]
          Length = 814

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/522 (61%), Positives = 404/522 (77%), Gaps = 21/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLF+ LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFFALWVPDLFMQRVQNNEEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGEKF++LYKKYE EGK  + +PA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGEKFENLYKKYEREGKAKKVIPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+EYTS +E AVCNLASIAL  ++         +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPEETAVCNLASIALPRFVRDKGVPIESHPSKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD F+
Sbjct: 473 NGSQNRYFDFDKLGEVTSTVTYNLNKIIDMNYYPVETAKRSNMRHRPIGIGVQGLADTFM 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LN+ IFETIYY AL+AS E+AA++GPY+TYEGSPVS+G++Q DMW V
Sbjct: 533 LLGMPFDSPEAQQLNRDIFETIYYHALKASAELAAKEGPYETYEGSPVSKGVIQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  W+W  L+E I+K GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSSRWNWPTLRETISKVGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGIWTPALKNKIIYEDGSVQKMAEIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+AK++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQPNFAKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T         D +  EE   D E  MA + C  +N+E+C+ 
Sbjct: 773 -TGFLKVNGDTDTKPAEE--DDVEAKMAQVACSLNNREECLA 811



 Score =  292 bits (747), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 172/226 (76%), Gaps = 3/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW VTP+  W+W  L+E I+K GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVTPSSRWNWPTLRETISKVGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWTPALKNKIIYEDGSVQKMAEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+AK++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQPNFAKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T         DT+  EE   D E  MA + C  +N+E+CL
Sbjct: 768 KFTVD-TGFLKVNGDTDTKPAEE--DDVEAKMAQVACSLNNREECL 810



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLF+ LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEENRARDLFFALWVPDLFMQRVQNNEEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGEKF++LYKKYE EG
Sbjct: 353 PNEAPGLADCWGEKFENLYKKYEREG 378



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ + +PFD  E++ LN+ IFETIYY AL+AS E+AA++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFMLLGMPFDSPEAQQLNRDIFETIYYHALKASAELAAKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +G++Q DMW VTP+  W+W  L+      G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGVIQPDMWNVTPSSRWNWPTLRETISKVGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWTPALKNK 677



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 709 RKSNQQNL-EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
            KS +++  E I+++Y   N+ +G   P+I+D  YE+IMKNA RL+S IIYDRDF+Y++F
Sbjct: 87  HKSTKKSFSETIKDMYLHYNERSGLMAPLIADDIYEVIMKNAARLDSEIIYDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 389 LWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|225438479|ref|XP_002278202.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Vitis vinifera]
 gi|296082544|emb|CBI21549.3| unnamed protein product [Vitis vinifera]
          Length = 808

 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/522 (61%), Positives = 400/522 (76%), Gaps = 27/522 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+  WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F DLY +YE EGK  + V A+ LWF +L SQIETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGQEFVDLYTQYEREGKAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           +KSNQQNLGTIK SNLCTEI+EYTS DE AVCNLASIAL  Y+         NP+     
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMESNPSKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  IVT NLNKIIDVN+YPVE A+ SN+RHRPIG+GVQGLAD FI
Sbjct: 473 RGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPVETAKRSNLRHRPIGLGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+ASCE+A R+GPY+TY+G PVS+GILQ DMWGV
Sbjct: 533 LLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  WDW AL++ I+++G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+Q+I  NGS+  +  IP+ LK +Y+TVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +     + D         D +  MA M+C   N+E+C+ 
Sbjct: 773 TSILQERTKTAD---------DDDTKMAQMVCSLTNREECMA 805



 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 172/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+  WDW AL++ I+++G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+Q+I  NGS+  +  IP+ LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + +     + D         D +  MA M+C   N+E+C+
Sbjct: 768 KFTVDTSILQERTKTAD---------DDDTKMAQMVCSLTNREECM 804



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+  WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F DLY +YE EG
Sbjct: 353 PNEAPGLADCWGQEFVDLYTQYEREG 378



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 15/175 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + + FD  E++ LNK IFETIYY AL+ASCE+A R+GPY+TY+G PVS
Sbjct: 522 LGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVTP+  WDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWGVTPSSRWDWDALRKMISENGIR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAII 757
            SN  +  V+   + +VNK       E G  +P + +   +II +N   L  + I
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKN---QIIYENGSVLKMSEI 691



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+E+YN  N+ +G + P+I+   YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKEMYNHFNERSGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG    DL+       K   +V    LWF +L SQIETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 DCWGQEFVDLYTQYEREGKAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|4151066|emb|CAA71815.1| ribonucleotide reductase [Nicotiana tabacum]
          Length = 808

 Score =  686 bits (1770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/521 (61%), Positives = 396/521 (76%), Gaps = 27/521 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YL+PWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE F+ LY  YE EGK  + V A+ LWF IL SQIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGEDFEKLYINYEKEGKAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPAETAVCNLASIALPRYVREKGVPSESQPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  +VT NLNKIIDVN+YPVE A+ SN+RHRPIGIGVQGLAD F+
Sbjct: 473 RGSKNRYFDFDKLAEVTALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGIGVQGLADTFM 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+AS E+AA++GPY+TY GSPVS+GI+Q DMWGV
Sbjct: 533 LLGMAFDSREAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVSKGIIQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+D WDW AL+E I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSDKWDWVALREMITKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP +LK++YK VWEI Q+T++D
Sbjct: 653 FVVVNKHLLYDLTEMGLWSPALKNRIIYEDGSVQKIPEIPDELKEIYKNVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
              +         + + +   D +  MA M+C   N+EDC+
Sbjct: 773 TAML---------KEKPKTAVDDDTKMAQMVCSLTNREDCL 804



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 173/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+D WDW AL+E I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSDKWDWVALREMITKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP +LK++YK VWEI Q
Sbjct: 648 VLSGEFVVVNKHLLYDLTEMGLWSPALKNRIIYEDGSVQKIPEIPDELKEIYKNVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++DMA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHTWSRGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D   +         + + +   D +  MA M+C   N+EDCL
Sbjct: 768 KFTVDTAML---------KEKPKTAVDDDTKMAQMVCSLTNREDCL 804



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YL+PWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLDPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE F+ LY  YE EG
Sbjct: 353 PNEAPGLADCWGEDFEKLYINYEKEG 378



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ + + FD  E++ LNK IFETIYY AL+AS E+AA++GPY+TY GSPVS
Sbjct: 522 IGVQGLADTFMLLGMAFDSREAQQLNKDIFETIYYHALKASSELAAKEGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI+Q DMWGVTP+D WDW AL+ +    G++
Sbjct: 582 KGIIQPDMWGVTPSDKWDWVALREMITKNGVR 613



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 45/54 (83%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y  V++ +G + P++SD+ YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYYHVSERSGLKAPLVSDEVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|392968362|ref|ZP_10333778.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrisoma limi
           BUZ 3]
 gi|387842724|emb|CCH55832.1| ribonucleoside-diphosphate reductase, alpha subunit [Fibrisoma limi
           BUZ 3]
          Length = 827

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/530 (62%), Positives = 406/530 (76%), Gaps = 28/530 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW PD FM+RVE++  WSL C
Sbjct: 293 RKGSFAVYLEPWHADIFEFLDLKKNHGKEELRARDLFYALWTPDLFMKRVEANDVWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F++LY +YE EG+  R V A+ LW+ IL+SQ ETGTPYMLYKDA N
Sbjct: 353 PHECPGLADCYGDEFEELYTRYEREGRARRTVKAQDLWYEILESQTETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN-PADKTYNF--TKLKD 267
           RKSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  +I    D    F   KL +
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPKFIKRDPDGVLRFDHQKLFE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+ TKNLNKIID+N+YPVEEAR SNMRHRPIG+GVQGLAD FI +R+PF+  E+R LN
Sbjct: 473 ITKVATKNLNKIIDLNYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFESEEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIY+GA+ AS E A   GPY+T++GSP+SQGI Q+DMWGVTP ++ W+W AL++ 
Sbjct: 533 EDIFETIYFGAMTASMEEAKTYGPYETWKGSPISQGIFQFDMWGVTPKSNRWNWEALRKD 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV+
Sbjct: 593 VVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLVK 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D MK+ LI+ NGS+Q I GIPQ +KDLYKTVWEI QK ++DMAADRGA+I QSQS
Sbjct: 653 LGLWNDAMKNNLILANGSVQAIPGIPQHIKDLYKTVWEIKQKHIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI--------------- 551
           LNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK AA+A++FT+               
Sbjct: 713 LNIHIQDANFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKFTVVQPQAEPQLEPALAE 772

Query: 552 --------DKTKMANAMASKDARSQE-EIQADQEQAMAAMICRRDNKEDC 592
                   D  + A   A    + +   + +D EQ  AAM C  D+ E C
Sbjct: 773 TAPVEKPLDYVQYAKEHAVMQPKPEPLPMVSDVEQNYAAMTCSLDDPEGC 822



 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/253 (57%), Positives = 184/253 (72%), Gaps = 25/253 (9%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP ++ W+W AL++ + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDMWGVTPKSNRWNWEALRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV+LGLW+D MK+ LI+ NGS+Q I GIPQ +KDLYKTVW
Sbjct: 630 YTRRVLSGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSVQAIPGIPQHIKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGA+I QSQSLNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 690 EIKQKHIIDMAADRGAYICQSQSLNIHIQDANFGKLTSMHFYAWKAGLKTGMYYLRTKAA 749

Query: 948 ANAIQFTI-----------------------DKTKMANAMASKDTRSQE-EIQADQEQAM 983
           A+A++FT+                       D  + A   A    + +   + +D EQ  
Sbjct: 750 ADAVKFTVVQPQAEPQLEPALAETAPVEKPLDYVQYAKEHAVMQPKPEPLPMVSDVEQNY 809

Query: 984 AAMICRRDNKEDC 996
           AAM C  D+ E C
Sbjct: 810 AAMTCSLDDPEGC 822



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW PD FM+RVE++  WSL C
Sbjct: 293 RKGSFAVYLEPWHADIFEFLDLKKNHGKEELRARDLFYALWTPDLFMKRVEANDVWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F++LY +YE EG
Sbjct: 353 PHECPGLADCYGDEFEELYTRYEREG 378



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+  E+R LN+ IFETIY+GA+ AS E A   GPY+T++GSP+S
Sbjct: 507 LGVQGLADAFIMLRMPFESEEARRLNEDIFETIYFGAMTASMEEAKTYGPYETWKGSPIS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QGI Q+DMWGVTP ++ W+W AL+   + +G++
Sbjct: 567 QGIFQFDMWGVTPKSNRWNWEALRKDVVEHGVR 599



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW+ IL+SQ ETGTPYMLYKDA NRKSNQ+NL  I+
Sbjct: 389 LWYEILESQTETGTPYMLYKDAANRKSNQKNLGTIK 424



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 42/63 (66%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++N+     I+ LY   + +TG    +IS + YE++ K+A  L+S IIYDRD+ Y++F
Sbjct: 87  HKETNKSFSSTIKRLYTYEDPKTGENASLISKEVYEVVRKHAALLDSTIIYDRDYGYDYF 146

Query: 768 GFK 770
           G+K
Sbjct: 147 GYK 149


>gi|218201671|gb|EEC84098.1| hypothetical protein OsI_30411 [Oryza sativa Indica Group]
          Length = 814

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/522 (61%), Positives = 400/522 (76%), Gaps = 21/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE EGK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREGKAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  A      ++ EE   D E  MA M+C  +N+E+C+ 
Sbjct: 773 -TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECLA 811



 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 174/226 (76%), Gaps = 3/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIFEDGSVQKMTEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  A     T++ EE   D E  MA M+C  +N+E+CL
Sbjct: 768 KFTVD-TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECL 810



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREG 378



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D W+W +L+      GL+   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVVPSDRWNWPSLRSTISKVGLR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNK 677



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y   N+ +G   P+++   YE+IMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYGHFNERSGLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFK 149



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|68070011|ref|XP_676917.1| ribonucleoside-diphosphate reductase, large subunit, [Plasmodium
           berghei strain ANKA]
 gi|56496825|emb|CAH95342.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium berghei]
          Length = 847

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/516 (62%), Positives = 398/516 (77%), Gaps = 9/516 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFMKRVKENKNWTLMC 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+SWG++F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKDACN
Sbjct: 392 PNECPGLSESWGDEFEKLYTKYEEENLGKKTVLAQDLWFAILQSQIETGVPYMLYKDACN 451

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K +NF KL D+ K
Sbjct: 452 SKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDREKKEFNFKKLYDITK 511

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YP++EA  SN RHRPIGIGVQGLAD F+ +R P++ +E++ LNK+I
Sbjct: 512 IITRNLDKIIERNYYPIKEAEKSNKRHRPIGIGVQGLADTFMLLRYPYESDEAKELNKRI 571

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A   GPY++Y+GSP SQGILQ+DMW        WDW  LK+KI+ 
Sbjct: 572 FETMYYAALEMSVELAQVHGPYESYKGSPASQGILQFDMWNAKVDNKYWDWDLLKKKISI 631

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 632 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 691

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGS+Q I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 692 WDEDMKQQLIAHNGSVQYISEIPNDLKELYKTVWEIKQKNIIDMAADRGVFIDQSQSLNI 751

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA   K+A    
Sbjct: 752 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAEKLKNAEGAT 811

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E I  +      A   RR+N E C+   G
Sbjct: 812 ITREVSRETISTESTVTQNACPLRRNNDEPCLMCSG 847



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 175/238 (73%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW        WDW  LK+KI+ HG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 606 LQFDMWNAKVDNKYWDWDLLKKKISIHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 665

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGS+Q I  IP  LK+LYKTVW
Sbjct: 666 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTVW 725

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 726 EIKQKNIIDMAADRGVFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 785

Query: 948 ANAIQFTIDKT------KMANAMASKDTR--SQEEIQADQEQAMAAMICRRDNKEDCL 997
            +AI+FT+D        K+ NA  +  TR  S+E I  +      A   RR+N E CL
Sbjct: 786 TDAIKFTVDTQVAKNAEKLKNAEGATITREVSRETISTESTVTQNACPLRRNNDEPCL 843



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAIWVPDLFMKRVKENKNWTLMC 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS+SWG++F+ LY KYE E L
Sbjct: 392 PNECPGLSESWGDEFEKLYTKYEEENL 418



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ +E++ LNK+IFET+YY ALE S E+A   GPY++Y+GSP S
Sbjct: 543 IGVQGLADTFMLLRYPYESDEAKELNKRIFETMYYAALEMSVELAQVHGPYESYKGSPAS 602

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW        WDW  LK    ++GL+
Sbjct: 603 QGILQFDMWNAKVDNKYWDWDLLKKKISIHGLR 635



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 423 VLAQDLWFAILQSQIETGVPYMLYKDACNSKSNQKNLGTIK 463



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 69  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 123

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ +N    +V E LY   +   G    +IS + Y+ IM++ DRLN  I Y R
Sbjct: 124 ----DNLHKSTNDDIGKVAEALYTYKDIR-GRSASLISKEVYDFIMEHKDRLNKEIDYTR 178

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 179 DFNYDYFGFK 188


>gi|345563310|gb|EGX46313.1| hypothetical protein AOL_s00110g137 [Arthrobotrys oligospora ATCC
           24927]
          Length = 917

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/467 (68%), Positives = 387/467 (82%), Gaps = 1/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANLDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GL+D +GE+F+ LY+KYE      R+ + A+KLW+AIL++Q ETG P+MLYKDAC
Sbjct: 353 PNEATGLADCYGEEFEALYEKYEKTENLARKTIKAQKLWYAILEAQTETGNPFMLYKDAC 412

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           N+KSNQ+NLG IK SNLCTEIVEY+S DEVAVCNLASIAL  +++     Y+F KL +V 
Sbjct: 413 NKKSNQKNLGIIKSSNLCTEIVEYSSPDEVAVCNLASIALPTFVDVVRNEYDFQKLHEVT 472

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           K++T+NLNKIIDVN+YPVEEA+ SN RHRPI +GVQGLAD F+ +R+PF+  E+R LNKQ
Sbjct: 473 KVITRNLNKIIDVNYYPVEEAKRSNFRHRPIAVGVQGLADAFLALRMPFESPEARHLNKQ 532

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIY+GA EAS E+AA  GPY++YEGSP SQG LQYDMW VTPTDLWDW  LK KIAK
Sbjct: 533 IFETIYHGAAEASAELAAEQGPYESYEGSPASQGQLQYDMWNVTPTDLWDWDELKAKIAK 592

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LLRDLV++GL
Sbjct: 593 HGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLRDLVDMGL 652

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W DNMK+++I + GSIQ++  IP  +K LYKTVWEI QK V+D+AADR AFIDQSQSLNI
Sbjct: 653 WSDNMKNRIIADGGSIQNVPNIPADIKSLYKTVWEISQKVVIDLAADRSAFIDQSQSLNI 712

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           ++ +    K++SMHF+GWK GLKTGMYYLRT  A+ AIQFT+D+  +
Sbjct: 713 HIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAASAAIQFTVDQEAL 759



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/192 (70%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LK KIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDMWNVTPTDLWDWDELKAKIAKHGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LLRDLV++GLW DNMK+++I + GSIQ++  IP  +K LYKTVWE
Sbjct: 628 SRRVLAGEFQVVNPWLLRDLVDMGLWSDNMKNRIIADGGSIQNVPNIPADIKSLYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT  A+
Sbjct: 688 ISQKVVIDLAADRSAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAS 747

Query: 949 NAIQFTIDKTKM 960
            AIQFT+D+  +
Sbjct: 748 AAIQFTVDQEAL 759



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 70/83 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 293 RPGAFAIYLEPWHADVFDFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANLDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN   GL+D +GE+F+ LY+KYE
Sbjct: 353 PNEATGLADCYGEEFEALYEKYE 375



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+PF+  E+R LNKQIFETIY+GA EAS E+AA  GPY++YEGSP 
Sbjct: 504 AVGVQGLADAFLALRMPFESPEARHLNKQIFETIYHGAAEASAELAAEQGPYESYEGSPA 563

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG LQYDMW VTPTDLWDW  LK     +G++
Sbjct: 564 SQGQLQYDMWNVTPTDLWDWDELKAKIAKHGMR 596



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAATITQKVIAGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V+ +LY+ VN      +PMIS   YE +M++AD LNSAI+YD+DFNYN+
Sbjct: 86  LHKQTKKQFSQVVSDLYHYVNPRNKRPSPMISKSTYETVMRHADELNSAIVYDKDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL +I+
Sbjct: 389 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGIIK 425


>gi|389739083|gb|EIM80277.1| hypothetical protein STEHIDRAFT_105343 [Stereum hirsutum FP-91666
           SS1]
          Length = 917

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/485 (64%), Positives = 394/485 (81%), Gaps = 2/485 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+  +  WSL  
Sbjct: 306 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRIGENGNWSLFS 365

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +G++F+ LY+KYE EGK ++ +PA+KLW+AI+D+QIETG P+M YKDA N
Sbjct: 366 PDEAPGLHEVYGDEFEALYEKYEREGKAMKTIPAQKLWYAIMDAQIETGGPFMCYKDAAN 425

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQ+NLG IK SNLCTEI+EY++ DE AVCNLAS+AL  +I   +  YNF KL DV K
Sbjct: 426 RKTNQKNLGVIKSSNLCTEIMEYSAPDETAVCNLASLALPSFIE--NGVYNFQKLHDVTK 483

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN++ID+NFYP+ EARNSNMRHRPIG+GVQGLAD F+ +R+PFD +E+R LN QI
Sbjct: 484 VVTYNLNRVIDLNFYPIPEARNSNMRHRPIGLGVQGLADAFMILRMPFDSDEARKLNLQI 543

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+EASC+IA  +G Y +YEGSP S+G LQ+D+WGV P++LWDWA LK K+A+H
Sbjct: 544 FETIYHAAVEASCDIAKVEGAYASYEGSPASKGELQFDLWGVKPSELWDWAELKAKVAQH 603

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+L+ L LW
Sbjct: 604 GLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELIRLDLW 663

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK+++I +NGS+Q I  IP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLNI+
Sbjct: 664 DDNMKNRIIAHNGSVQYIPEIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNIH 723

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +      +++SMHF+GWK GLKTGMYYLRTKPA+ AIQFT+D   +     ++D R  ++
Sbjct: 724 LQAPTVGQLTSMHFYGWKRGLKTGMYYLRTKPASQAIQFTLDHNLVKETKKAQDKRGVQK 783

Query: 571 IQADQ 575
            +A +
Sbjct: 784 AEASR 788



 Score =  292 bits (747), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 133/211 (63%), Positives = 170/211 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV P++LWDWA LK K+A+HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 578 LQFDLWGVKPSELWDWAELKAKVAQHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 637

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+L+ L LWDDNMK+++I +NGS+Q I  IP  +K +YKTVWE
Sbjct: 638 TRRVLAGEFQVVCPWLLRELIRLDLWDDNMKNRIIAHNGSVQYIPEIPDDVKAIYKTVWE 697

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLNI++      +++SMHF+GWK GLKTGMYYLRTKPA+
Sbjct: 698 ISQKKVLDLAADRGAFICQSQSLNIHLQAPTVGQLTSMHFYGWKRGLKTGMYYLRTKPAS 757

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQ 979
            AIQFT+D   +     ++D R  ++ +A +
Sbjct: 758 QAIQFTLDHNLVKETKKAQDKRGVQKAEASR 788



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+  +  WSL  
Sbjct: 306 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRIGENGNWSLFS 365

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + +G++F+ LY+KYE EG
Sbjct: 366 PDEAPGLHEVYGDEFEALYEKYEREG 391



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD +E+R LN QIFETIY+ A+EASC+IA  +G Y +YEGSP S
Sbjct: 515 LGVQGLADAFMILRMPFDSDEARKLNLQIFETIYHAAVEASCDIAKVEGAYASYEGSPAS 574

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+WGV P++LWDWA LK     +GL+
Sbjct: 575 KGELQFDLWGVKPSELWDWAELKAKVAQHGLR 606



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++Q    G+T ++L + AA +  A +      +AIL ++I     +   K++ +  
Sbjct: 52  VTQKVIQGVYPGITTSELDNLAA-ETAAYLTTKHPDYAILAARIAVSNLHKTTKESFS-- 108

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
                 + I +LY+ VN +TG    MISD+ Y+ + ++A+RL+SAI++ RDF YNFFG+K
Sbjct: 109 ------QTISDLYHYVNPKTGRAAGMISDETYKFVNEHAERLDSAIVWSRDFEYNFFGYK 162



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K +  +   KLW+AI+D+QIETG P+M YKDA NRK+NQ+NL VI+
Sbjct: 392 KAMKTIPAQKLWYAIMDAQIETGGPFMCYKDAANRKTNQKNLGVIK 437


>gi|398389296|ref|XP_003848109.1| hypothetical protein MYCGRDRAFT_101786 [Zymoseptoria tritici
           IPO323]
 gi|339467983|gb|EGP83085.1| hypothetical protein MYCGRDRAFT_101786 [Zymoseptoria tritici
           IPO323]
          Length = 916

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/463 (69%), Positives = 387/463 (83%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH D+F FL+L+KN GKEE RARDLFYGLW+PD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAMYIEPWHADVFSFLDLRKNHGKEEVRARDLFYGLWVPDLFMKRVEQNTTWTLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G +F++LY++YE EGK    V A+KLW+AIL++Q ETGTPY+LYKDA N
Sbjct: 353 PHECPGLADVYGAEFEELYERYEREGKGRETVRAQKLWYAILEAQTETGTPYILYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  Y++  ++ ++F KL  V +
Sbjct: 413 SKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASLALPTYVDIENERFDFEKLHQVTQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNKII+VN YPV EAR SN RHRPIG+GV GLAD F+ +R+PFD  E+R LN QI
Sbjct: 473 TVTKNLNKIIEVNHYPVPEARKSNFRHRPIGLGVNGLADAFLALRMPFDSPEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC++AA+ GPY+TYEGSPVS+G LQYDMWGVTPTDLWDWAALK KIA+H
Sbjct: 533 FETIYHAALTASCDLAAKLGPYETYEGSPVSKGELQYDMWGVTPTDLWDWAALKAKIAEH 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QI+G NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLVE GLW
Sbjct: 593 GVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVERGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I + GSIQ I  IP  LK LYKTVWEI Q+ ++ M+ADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIADGGSIQRIPNIPDDLKALYKTVWEISQRHIVQMSADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           M E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+
Sbjct: 713 MKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAASAPIQFTVDQ 755



 Score =  298 bits (764), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/206 (68%), Positives = 168/206 (81%), Gaps = 2/206 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDWAALK KIA+HGVRNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 567 LQYDMWGVTPTDLWDWAALKAKIAEHGVRNSLLVAPMPTASTSQIMGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLVE GLW DNMK+++I + GSIQ I  IP  LK LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVERGLWSDNMKNRIIADGGSIQRIPNIPDDLKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++ M+ADRGAFIDQSQSLNI+M E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 687 ISQRHIVQMSADRGAFIDQSQSLNIHMKEPTMGKITSMHFAGWKLGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKT--KMANAMASKDTRSQ 972
             IQFT+D+   K+A+    K ++ +
Sbjct: 747 APIQFTVDQEMLKVADTNLGKSSKKR 772



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 76/92 (82%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PFD  E+R LN QIFETIY+ AL ASC++AA+ GPY+TYEGSPVS
Sbjct: 504 LGVNGLADAFLALRMPFDSPEARQLNIQIFETIYHAALTASCDLAAKLGPYETYEGSPVS 563

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMWGVTPTDLWDWAALK     +G++
Sbjct: 564 KGELQYDMWGVTPTDLWDWAALKAKIAEHGVR 595



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 63/75 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH D+F FL+L+KN GKEE RARDLFYGLW+PD FM+RVE +  W+LMC
Sbjct: 293 RPGAFAMYIEPWHADVFSFLDLRKNHGKEEVRARDLFYGLWVPDLFMKRVEQNTTWTLMC 352

Query: 61  PNACRGLSDSWGEKF 75
           P+ C GL+D +G +F
Sbjct: 353 PHECPGLADVYGAEF 367



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V  G+ Q    GVT   L D AA +  A +      +AIL ++I             +++
Sbjct: 43  VISGVYQ----GVTTIQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V+ +LY+ +N +T    PMISD+ Y  +MK+AD LNSAI+YDRDFNY +FGFK
Sbjct: 90  TKKQFSAVVSDLYHYINPKTNKAAPMISDETYATVMKHADELNSAIVYDRDFNYQYFGFK 149



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETGTPY+LYKDA N KSNQ+NL  I
Sbjct: 384 VRAQKLWYAILEAQTETGTPYILYKDAANSKSNQKNLGTI 423


>gi|47497381|dbj|BAD19419.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|125584063|gb|EAZ24994.1| hypothetical protein OsJ_08774 [Oryza sativa Japonica Group]
 gi|186920366|gb|ACC95436.1| ribonucleotide diphosphate reductase large subunit 2 [Oryza sativa
           Japonica Group]
          Length = 810

 Score =  685 bits (1768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/522 (62%), Positives = 403/522 (77%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F +LYKKYE EGK  + V A+ LWF IL +QIETGTPYMLYKD+CN
Sbjct: 353 PNEAPGLADCWGDEFQNLYKKYEREGKAKKVVSAQALWFDILKAQIETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+E+TS  E AVCNLASI L  ++         +PA     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIGLPRFVREKGVPMESHPAKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  IVT+NLNKIID N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 NGSKNRYFDFDKLAEITSIVTRNLNKIIDTNYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS EIAA++GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D W+W+ L+E I+K GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K++++  +GS+Q I  IP  LK +Y+TVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQKTIVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T + +    K   ++EE   D +  MA ++C  +N+++C+ 
Sbjct: 773 TTLLKD----KQHNAEEE---DVQSKMAEVVCSLNNRDECLA 807



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 175/226 (77%), Gaps = 7/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D W+W+ L+E I+K GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWNWSDLREMISKVGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K++++  +GS+Q I  IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWSPVLKNKIVYEDGSVQKISEIPDDLKAIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLNI+M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTIVDMAIDRGCYIDQSQSLNIHMDQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T + +    K   ++EE   D +  MA ++C  +N+++CL
Sbjct: 768 KFTVDTTLLKD----KQHNAEEE---DVQSKMAEVVCSLNNRDECL 806



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 81/117 (69%), Gaps = 8/117 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQNNENWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTG 117
           PN   GL+D WG++F +LYKKYE EG       A A++        FD L+ +  TG
Sbjct: 353 PNEAPGLADCWGDEFQNLYKKYEREGKAKKVVSAQALW--------FDILKAQIETG 401



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS EIAA++GPY+TY GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSTEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYSGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D W+W+ L+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVVPSDRWNWSDLREMISKVGVR--NSLLIAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P++ +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGIWSPVLKNK 677



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 KAKKVVSAQALWFDILKAQIETGTPYMLYKDSCNRKSNQQNLGTIK 424



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y   ++ +G   P+I+D  YEIIMKN  RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKVMYMHYDERSGLLAPLIADDVYEIIMKNTTRLDSEIIYDRDFDYDYFGFK 149


>gi|186920362|gb|ACC95434.1| ribonucleotide diphosphate reductase large subunit 1 [Oryza sativa
           Japonica Group]
          Length = 814

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/522 (61%), Positives = 400/522 (76%), Gaps = 21/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE EGK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREGKAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  A      ++ EE   D E  MA M+C  +N+E+C+ 
Sbjct: 773 -TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECLA 811



 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 174/226 (76%), Gaps = 3/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  A     T++ EE   D E  MA M+C  +N+E+CL
Sbjct: 768 KFTVD-TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECL 810



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREG 378



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D W+W +L+      GL+   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVVPSDRWNWPSLRSTISKVGLR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNK 677



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y   N+ +G   P+++   YE+IMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYGHFNERSGLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFK 149



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|115466654|ref|NP_001056926.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|55296056|dbj|BAD67618.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|55296229|dbj|BAD67970.1| putative ribonucleotide reductase [Oryza sativa Japonica Group]
 gi|113594966|dbj|BAF18840.1| Os06g0168600 [Oryza sativa Japonica Group]
 gi|222635036|gb|EEE65168.1| hypothetical protein OsJ_20270 [Oryza sativa Japonica Group]
          Length = 814

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/522 (61%), Positives = 400/522 (76%), Gaps = 21/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE EGK  + VPA+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREGKAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPIESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V   VT NLNKIID+N+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SDSKNRYFDFDKLAEVTSTVTYNLNKIIDINYYPVETAKRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T +  A      ++ EE   D E  MA M+C  +N+E+C+ 
Sbjct: 773 -TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECLA 811



 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 174/226 (76%), Gaps = 3/226 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D W+W +L+  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWNWPSLRSTISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+++I  +GS+Q +  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGVWTPALKNKIIYEDGSVQKMTVIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLN++M + N+ K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNVHMEQPNFGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T +  A     T++ EE   D E  MA M+C  +N+E+CL
Sbjct: 768 KFTVD-TALLKANGENGTKAAEE--EDVEAKMAQMVCSLNNREECL 810



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+++ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQNNQEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGDEFEKLYTKYEREG 378



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIY+ +L+AS E+A ++GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYFHSLKASAELAGKEGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+D W+W +L+      GL+   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVVPSDRWNWPSLRSTISKVGLR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  TP + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGVWTPALKNK 677



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+++Y   N+ +G   P+++   YE+IMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKDMYGHFNERSGLNAPLVAHDVYEVIMKNASRLDSEIIYDRDFDYDYFGFK 149



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKIVPAQTLWFDILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|297821381|ref|XP_002878573.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
 gi|297324412|gb|EFH54832.1| R1/RIBONUCLEOTIDE REDUCTASE, reductase protein R1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 817

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/534 (61%), Positives = 404/534 (75%), Gaps = 23/534 (4%)

Query: 81  KYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRV 140
           +Y  +G    + GAFA+YLEPWH D+F+FLEL+KN GKEE RARDLFY LW+PD FM RV
Sbjct: 284 RYVDQGGGKRKEGAFAVYLEPWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERV 343

Query: 141 ESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGT 200
           +S+ QWSL CPN   GL+D WG +F+ LY KYE EGK  + V A++LW+ IL SQ+ETGT
Sbjct: 344 QSNGQWSLFCPNEAPGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGT 403

Query: 201 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PA 256
           PYML+KD+CNRKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++     P 
Sbjct: 404 PYMLFKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPL 463

Query: 257 D--------------KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI 302
           D              + ++F KL +V   VT NLNKIIDVN+YPVE A+ SNMRHRPIGI
Sbjct: 464 DSHPSKLAGSLGSKNRYFDFDKLAEVTATVTLNLNKIIDVNYYPVETAKTSNMRHRPIGI 523

Query: 303 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 362
           GVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS+
Sbjct: 524 GVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPVSK 583

Query: 363 GILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 422
           GILQ DMW V P++ WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSN
Sbjct: 584 GILQPDMWNVIPSNRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSN 643

Query: 423 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 482
           IYSRRVLSGEF VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TV
Sbjct: 644 IYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTV 703

Query: 483 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           WEI Q+TV+DMA DRG +IDQSQSLNI+M + N+AK++S+HF+ W  GLKTGMYYLR++ 
Sbjct: 704 WEIKQRTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKGLKTGMYYLRSRA 763

Query: 543 AANAIQFTIDKT--KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
           AA+AI+FT+D    K   ++A  D   +EE   D E  +A M+C   N +DC+ 
Sbjct: 764 AADAIKFTVDTAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPDDCLA 814



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/228 (60%), Positives = 175/228 (76%), Gaps = 5/228 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P++ WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 589 DMWNVIPSNRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 648

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL ++GLW   +K++LI  NGSI ++  IP  LK +Y+TVWEI Q
Sbjct: 649 VLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQ 708

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +TV+DMA DRG +IDQSQSLNI+M + N+AK++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 709 RTVVDMAVDRGCYIDQSQSLNIHMDKPNFAKLTSLHFYAWTKGLKTGMYYLRSRAAADAI 768

Query: 952 QFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D    K   ++A  D   +EE   D E  +A M+C   N +DCL
Sbjct: 769 KFTVDTAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPDDCL 813



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           + GAFA+YLEPWH D+F+FLEL+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 294 KEGAFAVYLEPWHADVFEFLELRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG +F+ LY KYE EG
Sbjct: 354 PNEAPGLADCWGAEFETLYTKYEREG 379



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/177 (44%), Positives = 108/177 (61%), Gaps = 15/177 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS
Sbjct: 523 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAARVGPYETYSGSPVS 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P++ WDWA L+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 583 KGILQPDMWNVIPSNRWDWAVLRDMISKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 640

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
            SN  +  V+   + +VNK       + G  TP + +K   +I +N   +N A I D
Sbjct: 641 TSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNK---LINENGSIVNVAEIPD 694



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 44/54 (81%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I++++N VN  +G ++P+I+D  ++IIM+NA RL+S IIYDRDF Y++FGFK
Sbjct: 96  ETIKDMFNHVNDRSGLKSPLIADDVFDIIMQNAARLDSEIIYDRDFEYDYFGFK 149



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V   +LW+ IL SQ+ETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 380 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIK 425


>gi|357137493|ref|XP_003570335.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Brachypodium distachyon]
          Length = 810

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/522 (62%), Positives = 399/522 (76%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWIPD FM RV+ + QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLDLRKNHGKEENRARDLFYALWIPDLFMERVQRNEQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD WG++F +LYKKYE EGK  + V A+ LWF IL +QIETGTPYMLYKD CN
Sbjct: 353 PSEAPGLSDCWGDEFQNLYKKYEREGKAKKVVSAQSLWFGILKAQIETGTPYMLYKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+E+TS  E AVCNLASIAL  ++         +PA     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASIALPRFVREKDVPIESHPAKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++   VT NLNKIID+N+YP+E AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 NGSKNRYFDFDKLAEITSTVTCNLNKIIDINYYPIETARRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS  +AA++GPY+TY+GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASAGLAAKEGPYETYDGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D W+W A++E I+  G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWNWPAIREMISNVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+ +I  +GS+Q I  IP  LK +YKTVWEI QKTV+D
Sbjct: 653 FVVVNKHLLHDLTEMGIWSPALKNNIIYEDGSVQKISEIPDDLKAIYKTVWEIKQKTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
              + +   S++A   E++QA     MA + C  +N+EDC+ 
Sbjct: 773 TGFLKDKQQSREA---EDLQA----KMAQVACSLNNREDCLA 807



 Score =  289 bits (739), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 170/226 (75%), Gaps = 7/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D W+W A++E I+  G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWNWPAIREMISNVGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+ +I  +GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWSPALKNNIIYEDGSVQKISEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KTV+DMA DRG +IDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTVVDMAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D   + +   S   R  E++QA     MA + C  +N+EDCL
Sbjct: 768 KFTVDTGFLKDKQQS---REAEDLQA----KMAQVACSLNNREDCL 806



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWIPD FM RV+ + QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLDLRKNHGKEENRARDLFYALWIPDLFMERVQRNEQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD WG++F +LYKKYE EG
Sbjct: 353 PSEAPGLSDCWGDEFQNLYKKYEREG 378



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS  +AA++GPY+TY+GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAGLAAKEGPYETYDGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMW V P+D W+W A++ +    G++
Sbjct: 582 KGILQPDMWNVVPSDRWNWPAIREMISNVGIR 613



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + ++ +Y   N+ +G   P+I+D  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  DTVKVMYTHFNERSGLMAPLIADDVYEIIMKNATRLDSEIIYDRDFDYDYFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVSAQSLWFGILKAQIETGTPYMLYKDTCNRKSNQQNLGTIK 424


>gi|124809244|ref|XP_001348526.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
 gi|23497421|gb|AAN36965.1|AE014821_52 ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           falciparum 3D7]
          Length = 847

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/516 (62%), Positives = 398/516 (77%), Gaps = 9/516 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS++WGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 392 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 451

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K +NF KL ++ K
Sbjct: 452 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 511

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 512 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRI 571

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A+  GPY++Y+GSP SQGILQ+DMW        WDW  LK KI K
Sbjct: 572 FETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWDWDELKAKIRK 631

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 632 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 691

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGSIQ I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 692 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNI 751

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA+  K+A    
Sbjct: 752 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 811

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E I  +          RR+N E C+   G
Sbjct: 812 ITREVSRETISTESTVTQNVCPLRRNNDEQCLMCSG 847



 Score =  288 bits (737), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 172/238 (72%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW        WDW  LK KI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 606 LQFDMWNAKVDNKYWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 665

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGSIQ I  IP  LK+LYKTVW
Sbjct: 666 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVW 725

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 726 EIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 785

Query: 948 ANAIQFTIDK------TKMANAMASKDTRSQEEIQADQEQAMAAMIC--RRDNKEDCL 997
            +AI+FT+D        K+ NA   + TR         E  +   +C  RR+N E CL
Sbjct: 786 TDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCL 843



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS++WGE+F+ LY KYE E +
Sbjct: 392 PNECPGLSETWGEEFEKLYTKYEEENM 418



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ + ++ LNK+IFET+YY ALE S E+A+  GPY++Y+GSP S
Sbjct: 543 IGVQGLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPAS 602

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW        WDW  LK     +GL+
Sbjct: 603 QGILQFDMWNAKVDNKYWDWDELKAKIRKHGLR 635



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKD+CN KSNQ+NL  I+
Sbjct: 423 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 463



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 69  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 123

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    EV E LY   +   G    +IS + Y+ I+ + DRLN  I Y R
Sbjct: 124 ----DNLHKNTSDDVAEVAEALYTYKDVR-GRPASLISKEVYDFILLHKDRLNKEIDYTR 178

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 179 DFNYDYFGFK 188


>gi|224082486|ref|XP_002306711.1| predicted protein [Populus trichocarpa]
 gi|222856160|gb|EEE93707.1| predicted protein [Populus trichocarpa]
          Length = 810

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/522 (62%), Positives = 403/522 (77%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LWIPD FM RV  D +WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F+ LY +YE E +  + + ARKLWF IL+SQIETGTPYML+KD+CN
Sbjct: 353 PSEAPGLADCWGQEFEKLYTQYEREDRAKKIISARKLWFEILNSQIETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
           RKSNQQNLGTIK SNLCTE++E+TS  E AVCNLAS+AL  ++     PA+         
Sbjct: 413 RKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASVALPRFVMERGVPAESQSSKMVGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   +T NLNKIIDVN+YPVE AR SN+RHRPIGIGVQGLAD FI
Sbjct: 473 RESKNRYFDFEKLAEVTTTITANLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD +E++ LNK IFETIYY AL +S E+AA+DGPY+TY GSPVS+GILQ DMWGV
Sbjct: 533 LLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVSKGILQMDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+D WDW AL+E I+K GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSDRWDWDALREMISKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N HLL DL E+GLW   +K+++I  +GS+  I  IP++LK +YKTVWEI QKT++D
Sbjct: 653 FVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + +  K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T + N  A+K   +++++ +D  QA     C   N+E+C+ 
Sbjct: 773 TTVLNNENANK---AEDDVNSDMAQAA----CSLQNREECMA 807



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 179/229 (78%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMWGVTP+D WDW AL+E I+K GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQMDMWGVTPSDRWDWDALREMISKSGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIY 644

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF V+N HLL DL E+GLW   +K+++I  +GS+  I  IP++LK +YKTVWE
Sbjct: 645 SRRVLSGEFVVMNKHLLNDLTEMGLWSPVLKNKIINESGSVSKIPEIPEQLKAIYKTVWE 704

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADRG +IDQSQSLNI+M + +  K++S+HFH W  GLKTGMYYLRT+ AA
Sbjct: 705 IKQKTLVDMAADRGCYIDQSQSLNIHMEQPDLGKLTSLHFHAWSKGLKTGMYYLRTRAAA 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D T + N  A+K   +++++ +D  QA     C   N+E+C+
Sbjct: 765 DAIKFTVDTTVLNNENANK---AEDDVNSDMAQAA----CSLQNREECM 806



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LWIPD FM RV  D +WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFLALWIPDLFMERVRGDDKWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL+D WG++F+ LY +YE E
Sbjct: 353 PSEAPGLADCWGQEFEKLYTQYERE 377



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD +E++ LNK IFETIYY AL +S E+AA+DGPY+TY GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSSEAKRLNKDIFETIYYHALRSSSELAAKDGPYETYCGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGVTP+D WDW AL+ +    G++
Sbjct: 582 KGILQMDMWGVTPSDRWDWDALREMISKSGVR 613



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q +      GVT T L D  A +  A +      +A+L ++I             ++ 
Sbjct: 39  VAQKVCAGVYRGVTTTQL-DELAAETAASMTANHPDYALLAARISVSR--------LHKN 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   E IE +YN +NK +G + P+I+D  YEIIMKNA+RL+S I+YDRDF Y++FGFK
Sbjct: 90  TKKSFSETIELMYNNLNKGSGQKAPLIADDVYEIIMKNAERLDSEILYDRDFEYDYFGFK 149



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   KLWF IL+SQIETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 383 IISARKLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIK 424


>gi|351722146|ref|NP_001236466.1| ribonucleotide reductase large subunit B [Glycine max]
 gi|27261144|gb|AAN87548.1|AF118785_1 ribonucleotide reductase large subunit B [Glycine max]
          Length = 808

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/522 (60%), Positives = 400/522 (76%), Gaps = 27/522 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WGEKF++LY +YE EGK ++ V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PSEAPGLTDCWGEKFEELYLQYEREGKAMKVVQAQSLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN---------------- 254
           RKSNQQNLGTIK SNLCTEI+EY+S  E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGS 472

Query: 255 --PADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  +VT NLNK+IDVN+YPVE A+ SN+RHRPIGIGVQGLAD FI
Sbjct: 473 TCSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK+IFETIYY AL+ SC +AA++GPY+TY GSP+S+GILQ DMWGV
Sbjct: 533 LLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPISKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P++ WDW AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 APSNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP  LK++YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPADLKNIYKTVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+ K++S+ F+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDQPNFGKLTSLQFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +         R +  ++ D    MA M+C   N+++C+ 
Sbjct: 773 TSAL---------REKSNVEDDDNTKMAQMVCSLTNRDECLA 805



 Score =  293 bits (750), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 174/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGV P++ WDW AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVAPSNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP  LK++YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPADLKNIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++DMAADRG +IDQSQSLNI+M + N+ K++S+ F+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLQFYAWSKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + +         R +  ++ D    MA M+C   N+++CL
Sbjct: 768 KFTVDTSAL---------REKSNVEDDDNTKMAQMVCSLTNRDECL 804



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WGEKF++LY +YE EG
Sbjct: 353 PSEAPGLTDCWGEKFEELYLQYEREG 378



 Score =  123 bits (308), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK+IFETIYY AL+ SC +AA++GPY+TY GSP+S
Sbjct: 522 IGVQGLADTFILLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPIS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGV P++ WDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWGVAPSNRWDWDALREMISKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNK 677



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y   N+ +G + P+I+D  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKIMYYHFNERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K + +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 379 KAMKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424


>gi|343173119|gb|AEL99262.1| ribonucleoside-diphosphate reductase subunit M1, partial [Silene
           latifolia]
          Length = 542

 Score =  684 bits (1766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/482 (66%), Positives = 382/482 (79%), Gaps = 18/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIFDFL+L+KN GKEE RARDLFY LW+PD FM RV++D QWSL C
Sbjct: 58  RKGAFAVYLEPWHADIFDFLDLRKNHGKEEQRARDLFYALWVPDLFMERVQTDGQWSLFC 117

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE  GK  + V A+ LWF IL +Q+ETGTPYML+KD+CN
Sbjct: 118 PNEAPGLADCWGKEFETLYTKYERLGKAKKVVQAQSLWFEILKAQMETGTPYMLFKDSCN 177

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI++YTS  E AVCNLASIAL  Y+                 
Sbjct: 178 RKSNQQNLGTIKSSNLCTEIIQYTSPTETAVCNLASIALPRYVKEKGVPSESQNTKLAGS 237

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V ++VT NLNKIIDVNFYPVE AR SNMRHRPIGIG+QGLAD FI
Sbjct: 238 LDSGNRYFDFDKLAEVVEVVTTNLNKIIDVNFYPVETARRSNMRHRPIGIGIQGLADTFI 297

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+ SC++AA++GPY+TYEGSPVS+GILQ DMWGV
Sbjct: 298 LLGMPFDSPEAQQLNKDIFETIYYHALKTSCKLAAKEGPYETYEGSPVSKGILQPDMWGV 357

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+D WDW AL+  IA+ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 358 TPSDRWDWGALRGMIAEKGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 417

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+Q+I  +GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 418 FVVVNKHLLHDLTEMGLWSPTLKNQIIYEDGSVQKIIEIPAHLKAIYKTVWEIKQKTLVD 477

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG FIDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 478 MAVDRGCFIDQSQSLNIHMDQANTGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 537

Query: 553 KT 554
            T
Sbjct: 538 TT 539



 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/187 (69%), Positives = 154/187 (82%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+D WDW AL+  IA+ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 353 DMWGVTPSDRWDWGALRGMIAEKGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 412

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+Q+I  +GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 413 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYEDGSVQKIIEIPAHLKAIYKTVWEIKQ 472

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG FIDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 473 KTLVDMAVDRGCFIDQSQSLNIHMDQANTGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 532

Query: 952 QFTIDKT 958
           +FT+D T
Sbjct: 533 KFTVDTT 539



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIFDFL+L+KN GKEE RARDLFY LW+PD FM RV++D QWSL C
Sbjct: 58  RKGAFAVYLEPWHADIFDFLDLRKNHGKEEQRARDLFYALWVPDLFMERVQTDGQWSLFC 117

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE  G
Sbjct: 118 PNEAPGLADCWGKEFETLYTKYERLG 143



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 96/140 (68%), Gaps = 5/140 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD FI + +PFD  E++ LNK IFETIYY AL+ SC++AA++GPY+TYEGSPVS
Sbjct: 287 IGIQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKTSCKLAAKEGPYETYEGSPVS 346

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVTP+D WDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 347 KGILQPDMWGVTPSDRWDWGALRGMIAEKGIR--NSLLVAPMPTASTSQILGNNECFEPY 404

Query: 710 KSNQQNLEVIEELYNMVNKE 729
            SN  +  V+   + +VNK 
Sbjct: 405 TSNIYSRRVLSGEFVVVNKH 424



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +Q+ETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 144 KAKKVVQAQSLWFEILKAQMETGTPYMLFKDSCNRKSNQQNLGTIK 189


>gi|390945294|ref|YP_006409055.1| ribonucleoside-diphosphate reductase subunit alpha [Belliella
           baltica DSM 15883]
 gi|390418722|gb|AFL86300.1| ribonucleoside-diphosphate reductase, alpha subunit [Belliella
           baltica DSM 15883]
          Length = 799

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/506 (63%), Positives = 398/506 (78%), Gaps = 8/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FMRRVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMRRVEQNESWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D   E+FD LY+KYE EG+    + A++LWF IL+SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLADCHSEEFDKLYEKYEREGRARETIKAQELWFEILESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD---KTYNFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  ++       K ++  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPKFVVEGKDGVKKFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+ T+NLNK+IDVN+YPVEEA+ SN RHRPIG+GVQGLAD FI +R+PFD +E+R LN
Sbjct: 473 ITKVATRNLNKVIDVNYYPVEEAKRSNFRHRPIGLGVQGLADAFILLRMPFDSDEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + I ET+Y+ A+E S EIA  +G Y+TY GSPVS+G  Q+D W V P ++ W+W  LKEK
Sbjct: 533 EDIAETMYFAAMETSMEIAKVEGTYETYAGSPVSKGQFQFDHWAVQPKSNRWNWNDLKEK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL+RDL+ 
Sbjct: 593 VKKYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMRDLIN 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+DNMK++LI  NGS+Q+I GIPQ +KDLYKTVWEI QKT++DMAADRGA+I QSQS
Sbjct: 653 LGLWNDNMKNRLIAANGSVQNIPGIPQNIKDLYKTVWEISQKTIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N+++ + N+ K++SMHF+ WK GLKTGMYYLR++ A +AIQFT+DK+ + +   ++ + 
Sbjct: 713 MNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAATSAIQFTVDKSALVDTPTNQVSI 772

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
                Q  Q+    A+ C  DN +DC
Sbjct: 773 DTSVSQQKQD----AIACSLDNPDDC 794



 Score =  302 bits (773), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 181/229 (79%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D W V P ++ W+W  LKEK+ K+GVRNSLLIAPMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDHWAVQPKSNRWNWNDLKEKVKKYGVRNSLLIAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL+RDL+ LGLW+DNMK++LI  NGS+Q+I GIPQ +KDLYKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMRDLINLGLWNDNMKNRLIAANGSVQNIPGIPQNIKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKT++DMAADRGA+I QSQS+N+++ + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 EISQKTIIDMAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            +AIQFT+DK+ + +   ++ +      Q  Q+    A+ C  DN +DC
Sbjct: 750 TSAIQFTVDKSALVDTPTNQVSIDTSVSQQKQD----AIACSLDNPDDC 794



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FMRRVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMRRVEQNESWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D   E+FD LY+KYE EG
Sbjct: 353 PNEAPGLADCHSEEFDKLYEKYEREG 378



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PFD +E+R LN+ I ET+Y+ A+E S EIA  +G Y+TY GSPVS
Sbjct: 507 LGVQGLADAFILLRMPFDSDEARRLNEDIAETMYFAAMETSMEIAKVEGTYETYAGSPVS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G  Q+D W V P ++ W+W  LK     YG++
Sbjct: 567 KGQFQFDHWAVQPKSNRWNWNDLKEKVKKYGVR 599



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQIETGTPYMLYKDA N+KSNQQNL  I+
Sbjct: 388 ELWFEILESQIETGTPYMLYKDAANKKSNQQNLGTIK 424



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT T+L + AA ++ A +      +A L ++I       L+K      SN      ++ 
Sbjct: 50  GVTTTELDNLAA-EICASLTVRHPEYATLAARIAVSN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +T     +I+   Y I+ K+A +L+ AI Y+RDF Y++FGFK
Sbjct: 101 LYTYINPKTEENAALIASDVYGIVKKHAAKLDEAIDYNRDFAYDYFGFK 149


>gi|284041187|ref|YP_003391117.1| ribonucleoside-diphosphate reductase subunit alpha [Spirosoma
           linguale DSM 74]
 gi|283820480|gb|ADB42318.1| ribonucleoside-diphosphate reductase, alpha subunit [Spirosoma
           linguale DSM 74]
          Length = 826

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/529 (61%), Positives = 408/529 (77%), Gaps = 27/529 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIFDFL+LKKN+GKEE RARDLFY LW PD FM+RVE D  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F++LY +YE EG+  R + A++LWF IL+SQ ETGTPYMLYKDA N
Sbjct: 353 PHECPGLADCYGDEFEELYTRYEREGRARRTIKAQELWFKILESQTETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNFTKLKD 267
           +KSNQ+NLGTIK SNLCTEI+EYT+ DE+AVCNLASIAL  +I         ++  KL +
Sbjct: 413 KKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPKFITRGTDGIMRFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K  T+NLNKIID+N+YPVEEAR SNMRHRPIG+GVQGLAD FI +R+PF+  E+R LN
Sbjct: 473 VTKTATRNLNKIIDINYYPVEEARRSNMRHRPIGLGVQGLADAFIMLRMPFESEEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIY+GA+ +S E A   GPY+T++GSP+SQGI Q+DMWGV P ++ WDW +L++ 
Sbjct: 533 EDIFETIYFGAMTSSMEQAKEFGPYETWKGSPISQGIFQFDMWGVKPKSNRWDWESLRKD 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV+
Sbjct: 593 VVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLVK 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D MK+ LI+ NGSIQ I  IPQ +KDLYKTVWEI QK ++DMAADRGA+I QSQS
Sbjct: 653 LGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVWEIKQKHIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK--------MAN 558
           LNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK AA+A++FT+ + +        MA 
Sbjct: 713 LNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAAADAVKFTVVQPQAEPQLEPVMAE 772

Query: 559 AMA--------------SKDARSQE-EIQADQEQAMAAMICRRDNKEDC 592
           A+               +++A  Q   +  D EQ  AAM C  D+ E C
Sbjct: 773 AVTVEKPLDYVQYAKEHAQNATPQPVPMVTDLEQQYAAMTCSLDDPEGC 821



 Score =  296 bits (759), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 145/252 (57%), Positives = 180/252 (71%), Gaps = 24/252 (9%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGV P ++ WDW +L++ + +HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDMWGVKPKSNRWDWESLRKDVVEHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV+LGLW+D MK+ LI+ NGSIQ I  IPQ +KDLYKTVW
Sbjct: 630 YTRRVLSGEFVVVNKHLLKDLVKLGLWNDAMKNNLILANGSIQAIPNIPQNIKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGA+I QSQSLNI++ + N+ K++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 690 EIKQKHIIDMAADRGAYICQSQSLNIHIQDSNFGKLTSMHFYAWKAGLKTGMYYLRTKAA 749

Query: 948 ANAIQFTI-----------------------DKTKMANAMASKDTRSQEEIQADQEQAMA 984
           A+A++FT+                       D  + A   A   T     +  D EQ  A
Sbjct: 750 ADAVKFTVVQPQAEPQLEPVMAEAVTVEKPLDYVQYAKEHAQNATPQPVPMVTDLEQQYA 809

Query: 985 AMICRRDNKEDC 996
           AM C  D+ E C
Sbjct: 810 AMTCSLDDPEGC 821



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIFDFL+LKKN+GKEE RARDLFY LW PD FM+RVE D  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIFDFLDLKKNSGKEEGRARDLFYALWTPDLFMKRVEDDDVWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F++LY +YE EG
Sbjct: 353 PHECPGLADCYGDEFEELYTRYEREG 378



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+  E+R LN+ IFETIY+GA+ +S E A   GPY+T++GSP+S
Sbjct: 507 LGVQGLADAFIMLRMPFESEEARRLNEDIFETIYFGAMTSSMEQAKEFGPYETWKGSPIS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QGI Q+DMWGV P ++ WDW +L+   + +G++
Sbjct: 567 QGIFQFDMWGVKPKSNRWDWESLRKDVVEHGVR 599



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQ ETGTPYMLYKDA N+KSNQ+NL  I+
Sbjct: 388 ELWFKILESQTETGTPYMLYKDAANKKSNQKNLGTIK 424



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 43/63 (68%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++N+     I++LY   + +TG    +IS + Y+++ ++A  L+S IIYDRD+ Y++F
Sbjct: 87  HKETNKSFSGTIKKLYQYEDPKTGENASLISKEVYDVVRQHAALLDSTIIYDRDYGYDYF 146

Query: 768 GFK 770
           G+K
Sbjct: 147 GYK 149


>gi|358365971|dbj|GAA82592.1| ribonucleotide reductase large subunit RNR1 [Aspergillus kawachii
           IFO 4308]
          Length = 864

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 383/466 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++FD LY+KYE EG+  R + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFDALYEKYEKEGRGRRTIKAQKLWYAILEAQTETGNPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL  +++ A   Y+F KL +V +
Sbjct: 413 KKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALPTFVDAARGEYDFGKLHEVVQ 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA+ SN RHRPI +GV GLAD F+ +RLPFD  E+R LN QI
Sbjct: 473 VLVRNLNKIIDINYYPVPEAKKSNFRHRPIALGVNGLADAFLALRLPFDSAEARQLNIQI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+  L AS ++A   G Y+TYEGSPVSQGILQYDMW  TPTDLWDW +LK KIA+ 
Sbjct: 533 FETIYHAGLTASSDLAKEFGTYETYEGSPVSQGILQYDMWDRTPTDLWDWDSLKAKIAQT 592

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 593 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 652

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+++I   GS+Q+I  IP  +K LYKTVWEI Q+T+L MAADRGAFIDQSQSLNI+
Sbjct: 653 SDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWEISQRTILQMAADRGAFIDQSQSLNIH 712

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           + E    K++SMHF GWK+GLKTGMYYLRT  A+  IQFT+D+ ++
Sbjct: 713 LKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAASAPIQFTVDQEQL 758



 Score =  289 bits (740), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 134/192 (69%), Positives = 160/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDW +LK KIA+ GVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 567 LQYDMWDRTPTDLWDWDSLKAKIAQTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GS+Q+I  IP  +K LYKTVWE
Sbjct: 627 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSVQNIPNIPSDIKALYKTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T+L MAADRGAFIDQSQSLNI++ E    K++SMHF GWK+GLKTGMYYLRT  A+
Sbjct: 687 ISQRTILQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFAGWKMGLKTGMYYLRTMAAS 746

Query: 949 NAIQFTIDKTKM 960
             IQFT+D+ ++
Sbjct: 747 APIQFTVDQEQL 758



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LW PD FM+RVE++  W+L C
Sbjct: 293 RPGAFAIYLEPWHSDVFEFLDLRKNHGKEEVRARDLFYALWTPDLFMKRVEANGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++FD LY+KYE EG
Sbjct: 353 PNEAPGLADVYGDEFDALYEKYEKEG 378



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 68/93 (73%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPFD  E+R LN QIFETIY+  L AS ++A   G Y+TYEGSPV
Sbjct: 503 ALGVNGLADAFLALRLPFDSAEARQLNIQIFETIYHAGLTASSDLAKEFGTYETYEGSPV 562

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW  TPTDLWDW +LK      G++
Sbjct: 563 SQGILQYDMWDRTPTDLWDWDSLKAKIAQTGVR 595



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAAAITQKVISGVYQGVTTVELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI +LY+ VN +     PMIS + YEIIMK+AD LNSAI+YDRDFNYNF
Sbjct: 86  LHKQTKKQFSLVISDLYHYVNPKNNAPAPMISKETYEIIMKHADELNSAIVYDRDFNYNF 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 388 KLWYAILEAQTETGNPFMLYKDACNKKSNQKNLGTI 423


>gi|1710391|sp|P50648.1|RIR1_PLAF4 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|497904|gb|AAA50171.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 806

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/516 (62%), Positives = 398/516 (77%), Gaps = 9/516 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 291 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS++WGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 351 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K +NF KL ++ K
Sbjct: 411 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 471 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A+  GPY++Y+GSP SQGILQ+DMW        WDW  LK KI K
Sbjct: 531 FETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWDWDELKAKIRK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 591 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGSIQ I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 651 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA+  K+A    
Sbjct: 711 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 770

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E I  +          RR+N E C+   G
Sbjct: 771 ITREVSRETISTESTVTQNVCPLRRNNDEQCLMCSG 806



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 172/238 (72%), Gaps = 9/238 (3%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW        WDW  LK KI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 565 LQFDMWNAKVDNKYWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGSIQ I  IP  LK+LYKTVW
Sbjct: 625 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 685 EIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 744

Query: 948 ANAIQFTIDK------TKMANAMASKDTRSQEEIQADQEQAMAAMIC--RRDNKEDCL 997
            +AI+FT+D        K+ NA   + TR         E  +   +C  RR+N E CL
Sbjct: 745 TDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCL 802



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 291 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS++WGE+F+ LY KYE E +
Sbjct: 351 PNECPGLSETWGEEFEKLYTKYEEENM 377



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ + ++ LNK+IFET+YY ALE S E+A+  GPY++Y+GSP S
Sbjct: 502 IGVQGLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPAS 561

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW        WDW  LK     +GL+
Sbjct: 562 QGILQFDMWNAKVDNKYWDWDELKAKIRKHGLR 594



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKD+CN KSNQ+NL  I+
Sbjct: 382 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 422



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 28  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 82

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    EV E LY   +   G    +IS + Y+ I+ + DRLN  I Y R
Sbjct: 83  ----DNLHKNTSDDVAEVAEALYTYKDVR-GRPASLISKEVYDFILLHKDRLNKEIDYTR 137

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 138 DFNYDYFGFK 147


>gi|294871762|ref|XP_002766029.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
 gi|239866594|gb|EEQ98746.1| ribonucleoside-diphosphate reductase large chain, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1504

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/467 (67%), Positives = 384/467 (82%), Gaps = 1/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV ++  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANGDWTLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D++GE+F+ LY+KYE +G   + V A+ LWF IL+SQ ETG PYMLYKD+ N
Sbjct: 356 PNEAPGLQDTYGEEFEALYEKYEKDGIGRKTVKAQSLWFKILESQQETGIPYMLYKDSAN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLC EI+EYTS DEVAVCNLASIALNM+++   +TY+F +L  VAK
Sbjct: 416 RKSNQKNLGTIRCSNLCCEIIEYTSSDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVAK 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNK+ID N+YPV EAR SNMRHRPIGIGVQGLAD F+ MR P++  E+  LN  I
Sbjct: 476 VVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRYPYESPEALKLNNDI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A EAS E+A RDGPY+T++GSP S+GILQ+DMW V P +  WDWA+LKE+I K
Sbjct: 536 FETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVIPDSGRWDWASLKEEIKK 595

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLLIAPMPTASTAQILGNNE+FEPYT NIY RRVL+GEF  VN HL+ DL+ELGL
Sbjct: 596 NGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGL 655

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D +KD++I   GS+Q +E IP +++DLYKTVWEI QK +LDMAA RG +IDQSQSLNI
Sbjct: 656 WNDEIKDKIIRKKGSVQGVEEIPSEIQDLYKTVWEIKQKKILDMAAGRGPYIDQSQSLNI 715

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +M     AK+SSMHF+GWKLGLKTG YYLRTK AA+AIQFT+D  K+
Sbjct: 716 HMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQFTLDAKKV 762



 Score =  281 bits (720), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 160/193 (82%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V P +  WDWA+LKE+I K+G+RNSLLIAPMPTASTAQILGNNE+FEPYT NI
Sbjct: 570 LQFDMWDVIPDSGRWDWASLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVL+GEF  VN HL+ DL+ELGLW+D +KD++I   GS+Q +E IP +++DLYKTVW
Sbjct: 630 YVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPSEIQDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +LDMAA RG +IDQSQSLNI+M     AK+SSMHF+GWKLGLKTG YYLRTK A
Sbjct: 690 EIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAA 749

Query: 948 ANAIQFTIDKTKM 960
           A+AIQFT+D  K+
Sbjct: 750 ADAIQFTLDAKKV 762



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 17/154 (11%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV ++  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANGDWTLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN   GL D++GE+F+ LY+KYE +G+      A +++        F  LE ++ TG   
Sbjct: 356 PNEAPGLQDTYGEEFEALYEKYEKDGIGRKTVKAQSLW--------FKILESQQETG--- 404

Query: 121 FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTC 154
                + Y L+  D   R+       ++ C N C
Sbjct: 405 -----IPYMLY-KDSANRKSNQKNLGTIRCSNLC 432



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MR P++  E+  LN  IFETIY+ A EAS E+A RDGPY+T++GSP S
Sbjct: 507 IGVQGLADAFLLMRYPYESPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +GILQ+DMW V P +  WDWA+LK
Sbjct: 567 EGILQFDMWDVIPDSGRWDWASLK 590



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 30/40 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V    LWF IL+SQ ETG PYMLYKD+ NRKSNQ+NL  I
Sbjct: 387 VKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTI 426



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q + +    GVT T+L D  A +  A +  +   F+ L ++I             ++ 
Sbjct: 41  ITQKVAEGIYPGVTTTEL-DSLAAETCAYMSQVHPDFSTLAARIAVSN--------LHKN 91

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++   E I ELYN+ +   G  +P++S++ Y I+  NAD+L+ AI YDRDF+Y++FGFK
Sbjct: 92  THESFSETITELYNITDSR-GRSSPLVSEEVYNIVKMNADKLDKAIDYDRDFDYDYFGFK 150


>gi|302805775|ref|XP_002984638.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
 gi|300147620|gb|EFJ14283.1| hypothetical protein SELMODRAFT_156827 [Selaginella moellendorffii]
          Length = 803

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/519 (61%), Positives = 396/519 (76%), Gaps = 26/519 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+FD+L+LKKN GKEE RARDLFYGLWIPD FM RV S++ WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EG+  R + A+KLWFAIL+SQ+ETG PYM++KD CN
Sbjct: 353 PNEAPGLADCWGEEFESLYTRYEREGRAKRSLSAQKLWFAILESQMETGNPYMVFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP--------------- 255
           RKSNQQNLGTIKCSNLCTEIVEYTS  E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSPSETAVCNLASIALPRFVREQGINSETKLVGSKGC 472

Query: 256 ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
            ++ ++F KL +V  +VT+NLNKIID+N+YPV+ A+ SN+RHRPIGIGVQGLAD FI + 
Sbjct: 473 KNRVFDFHKLAEVTTVVTENLNKIIDINYYPVDTAKRSNLRHRPIGIGVQGLADAFILLG 532

Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 375
           LPFD  E+R LNK IFETIYY A++ S  +A   G Y+TY GSPVS+G+ Q DMW V P+
Sbjct: 533 LPFDSEEARDLNKDIFETIYYHAMKTSSILAELYGVYETYPGSPVSKGVFQPDMWNVIPS 592

Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
             WDWAALKE +A+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF V
Sbjct: 593 GRWDWAALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVV 652

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN HLL DL +LG+W  ++K++++  NGSIQ IEGIP  LK +Y+TVWEI Q+T++DMA 
Sbjct: 653 VNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWEIKQRTIVDMAV 712

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           +RGA+IDQSQSLNI+M +    K++S+HFH W  GLKTGMYYLR++ AA+AI+FT+D   
Sbjct: 713 ERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAADAIKFTVDTAS 772

Query: 556 MANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
           + +   + D           E+ +A M+C  +N+E+C+ 
Sbjct: 773 LKSPTKTTD-----------EELLAQMVCSLENRENCLA 800



 Score =  299 bits (765), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 11/229 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+ DMW V P+  WDWAALKE +A+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 582 FQPDMWNVIPSGRWDWAALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 641

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL +LG+W  ++K++++  NGSIQ IEGIP  LK +Y+TVWE
Sbjct: 642 TRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWE 701

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMA +RGA+IDQSQSLNI+M +    K++S+HFH W  GLKTGMYYLR++ AA
Sbjct: 702 IKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAA 761

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D   + +   + D           E+ +A M+C  +N+E+CL
Sbjct: 762 DAIKFTVDTASLKSPTKTTD-----------EELLAQMVCSLENRENCL 799



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+FD+L+LKKN GKEE RARDLFYGLWIPD FM RV S++ WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNEAPGLADCWGEEFESLYTRYEREG 378



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + LPFD  E+R LNK IFETIYY A++ S  +A   G Y+TY GSPVS
Sbjct: 519 IGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSILAELYGVYETYPGSPVS 578

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+ Q DMW V P+  WDWAALK +   +G++
Sbjct: 579 KGVFQPDMWNVIPSGRWDWAALKEMVARHGVR 610



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 50/63 (79%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++K+ +   E ++E+Y+ V++ +G + P+I++  Y+IIMKNA +L+S IIYDRDF+Y++F
Sbjct: 87  HKKTKKSFSETVKEMYSHVDERSGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL+SQ+ETG PYM++KD CNRKSNQQNL  I+
Sbjct: 388 KLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIK 424


>gi|363751963|ref|XP_003646198.1| hypothetical protein Ecym_4318 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356889833|gb|AET39381.1| hypothetical protein Ecym_4318 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 877

 Score =  684 bits (1764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/487 (64%), Positives = 397/487 (81%), Gaps = 9/487 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FMRRV+ +  W+L  
Sbjct: 293 RPGAFAIYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMRRVQDNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLS+ WG++F++LY++Y  EG+  + + A+KLW+AIL++Q ETGTP++LYKDACN
Sbjct: 353 PSEAPGLSEVWGDEFEELYERYVLEGRGRKTIKAQKLWYAILEAQTETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+N+GTIK SNLC EIVEY+S +E AVCNLASIAL  +I  +     + YNF KL 
Sbjct: 413 RKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFIEESSDGKTQFYNFQKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+AK+VT+NLN++ID N+YPVE AR SNMRHRPI +GVQGLAD F+ +R+PFD  E++ L
Sbjct: 473 DIAKVVTRNLNRVIDRNYYPVETARRSNMRHRPIALGVQGLADAFMILRIPFDSKEAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFET+Y+ A EAS E+A  +GPY++++GSP+S+GILQ+DMWG  PTDLWDW  LK K
Sbjct: 533 NIQIFETLYHAACEASVELAIEEGPYESFKGSPISKGILQFDMWGRKPTDLWDWQTLKAK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG RNSLLIAPMPTAST+QILG NE FEPYTSN+YSRRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IVKHGTRNSLLIAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD++MK  +I +NGSIQ +  IPQ+LKDLYKTVWE+ QKT++DMAADRGA+IDQSQS
Sbjct: 653 LGVWDESMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQKTIIDMAADRGAYIDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT---KMANAMA-- 561
           LNI++      +++SMHF+GWK GLKTGMYYLRT+ A+ AIQFT+DK    + AN +A  
Sbjct: 713 LNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTVDKAVAEQAANNVANL 772

Query: 562 SKDARSQ 568
           SK  R Q
Sbjct: 773 SKLQRPQ 779



 Score =  298 bits (764), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 171/209 (81%), Gaps = 5/209 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWG  PTDLWDW  LK KI KHG RNSLLIAPMPTAST+QILG NE FEPYTSN+Y
Sbjct: 571 LQFDMWGRKPTDLWDWQTLKAKIVKHGTRNSLLIAPMPTASTSQILGYNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LLRDLV+LG+WD++MK  +I +NGSIQ +  IPQ+LKDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLRDLVDLGVWDESMKSHIISDNGSIQGLPNIPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QKT++DMAADRGA+IDQSQSLNI++      +++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 LSQKTIIDMAADRGAYIDQSQSLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKT---KMANAMA--SKDTRSQ 972
            AIQFT+DK    + AN +A  SK  R Q
Sbjct: 751 AAIQFTVDKAVAEQAANNVANLSKLQRPQ 779



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FMRRV+ +  W+L  
Sbjct: 293 RPGAFAIYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMRRVQDNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLS+ WG++F++LY++Y  EG
Sbjct: 353 PSEAPGLSEVWGDEFEELYERYVLEG 378



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +R+PFD  E++ LN QIFET+Y+ A EAS E+A  +
Sbjct: 496 ARRSNMRHRPIALGVQGLADAFMILRIPFDSKEAKELNIQIFETLYHAACEASVELAIEE 555

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY++++GSP+S+GILQ+DMWG  PTDLWDW  LK   + +G +
Sbjct: 556 GPYESFKGSPISKGILQFDMWGRKPTDLWDWQTLKAKIVKHGTR 599



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VI +LY+ +N + G ++PMISD+ YEI+M++ D LNSAI+YDRDF YN+FGFK
Sbjct: 90  TTKQFSQVISDLYHYINPKNGLKSPMISDEVYEIVMEHKDELNSAILYDRDFQYNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           ++WG    +L++   L  +    +   KLW+AIL++Q ETGTP++LYKDACNRKSNQ+N+
Sbjct: 361 EVWGDEFEELYERYVLEGRGRKTIKAQKLWYAILEAQTETGTPFILYKDACNRKSNQKNI 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|389740180|gb|EIM81371.1| ribonucleotide reductase alpha subunit [Stereum hirsutum FP-91666
           SS1]
          Length = 923

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/493 (64%), Positives = 400/493 (81%), Gaps = 7/493 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+  +  W+L  
Sbjct: 308 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRISENGNWTLFS 367

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +   GL + +G++F+ LY+KYE EG+  + +PA+KLW+AI+D+QIETG P+M YKDA N
Sbjct: 368 ADEAPGLHEVYGDEFEALYEKYEKEGRGRKTMPAQKLWYAIMDAQIETGGPFMCYKDAAN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLG IK SNLCTEI+EY++ DE AVCNLAS+AL  +I+  +  YNF KL DVAK
Sbjct: 428 RKSNQKNLGVIKSSNLCTEIMEYSAPDETAVCNLASLALPTFID--NGIYNFQKLHDVAK 485

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLN++IDVN+YPV EARNSNMRHRPIG+GVQGLAD F+ +R+ FD + +R LN+QI
Sbjct: 486 VVTYNLNRVIDVNYYPVPEARNSNMRHRPIGLGVQGLADAFMILRMAFDSDAARKLNQQI 545

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+EASCEIA  +GPY++YEGSP S+G LQYDMWGVTPTDLWDW  LK K+A+H
Sbjct: 546 FETIYHAAVEASCEIAEEEGPYESYEGSPASKGELQYDMWGVTPTDLWDWEELKAKVAQH 605

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLR+LVEL LW
Sbjct: 606 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVELKLW 665

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+++I +NGSIQ I  IP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 666 DDDMKNKIIAHNGSIQAIPEIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 725

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-----KTKMANAMASKDA 565
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D     +TK A   A  D 
Sbjct: 726 LQSPTVNQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTLDHKLVEQTKKAQDKAKLDK 785

Query: 566 RSQEEIQADQEQA 578
            ++++  A+++ +
Sbjct: 786 ATKKDELAEKKAS 798



 Score =  292 bits (748), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 140/219 (63%), Positives = 175/219 (79%), Gaps = 5/219 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTPTDLWDW  LK K+A+HG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 580 LQYDMWGVTPTDLWDWEELKAKVAQHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 639

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LVEL LWDD+MK+++I +NGSIQ I  IP  +K +YKTVWE
Sbjct: 640 TRRVLAGEFQVVCPWLLRELVELKLWDDDMKNKIIAHNGSIQAIPEIPDDVKAIYKTVWE 699

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 700 ISQKKVLDLAADRGAFICQSQSLNVHLQSPTVNQLTSMHFYGWKKGLKTGMYYLRTRPAA 759

Query: 949 NAIQFTID-----KTKMANAMASKDTRSQEEIQADQEQA 982
            AIQFT+D     +TK A   A  D  ++++  A+++ +
Sbjct: 760 QAIQFTLDHKLVEQTKKAQDKAKLDKATKKDELAEKKAS 798



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+ FD + +R LN+QIFETIY+ A+EASCEIA  +GPY++YEGSP S
Sbjct: 517 LGVQGLADAFMILRMAFDSDAARKLNQQIFETIYHAAVEASCEIAEEEGPYESYEGSPAS 576

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYDMWGVTPTDLWDW  LK     +GL+
Sbjct: 577 KGELQYDMWGVTPTDLWDWEELKAKVAQHGLR 608



 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+  +  W+L  
Sbjct: 308 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRISENGNWTLFS 367

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
            +   GL + +G++F+ LY+KYE EG
Sbjct: 368 ADEAPGLHEVYGDEFEALYEKYEKEG 393



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E + V+Q ++Q    GVT ++L + AA +  A +      +AIL ++I       L+KD 
Sbjct: 50  EPAEVAQKVIQGVYQGVTTSELDNLAA-ETAAYLTTKHPDYAILAARIAVSN---LHKDT 105

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
               S+     VI +LYN VN +TG    MISD+ Y  I +NA+RL+SAIIY+RDFNYNF
Sbjct: 106 KKNFSH-----VIADLYNYVNPKTGKAAGMISDETYRFISENAERLDSAIIYERDFNYNF 160

Query: 767 FGFK 770
           FGFK
Sbjct: 161 FGFK 164



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AI+D+QIETG P+M YKDA NRKSNQ+NL VI+
Sbjct: 403 KLWYAIMDAQIETGGPFMCYKDAANRKSNQKNLGVIK 439


>gi|228861716|ref|YP_002854736.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
 gi|226425164|gb|ACO53576.1| Rr1 [Euproctis pseudoconspersa nucleopolyhedrovirus]
          Length = 769

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/466 (64%), Positives = 384/466 (82%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIYLEPWH D++DFL LK+N G EE +ARDL Y LW+PD FMRRV+ D  WSLMC
Sbjct: 290 RKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G +FD+LY +YE EGK + QVPAR L+  I+++Q+ETGTPYMLYKDACN
Sbjct: 350 PDRCPGLSDVYGNQFDELYAQYEREGKQVSQVPARDLFKFIIETQVETGTPYMLYKDACN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQ NLGTIKCSNLC+EI+EY+  D+VAVCNLASI +N  +   +  +NF  LK + K
Sbjct: 410 RKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVE--NGAFNFQTLKRITK 467

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V KNLNKIIDVNFYP+EEAR SN++HRP+G+G+QGLAD F+ +R+P++ +E++LLN QI
Sbjct: 468 TVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQI 527

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIYYGALEASCE+A   G Y++Y GSP S+GILQYDMW  TPT+LWDW+ LK++I+ H
Sbjct: 528 AETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATPTNLWDWSVLKQRISTH 587

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQILGNNESFEP+T+N+Y RRVL+G+FQV+NHHL+ DLV L L+
Sbjct: 588 GLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLVDDLVALNLY 647

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+NM++++I   GS+Q I  IP+ +K LYKTVWE+  K +++MA DRGA+ DQSQS N++
Sbjct: 648 DENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYTDQSQSFNVF 707

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +AE  YA+M+S+H H W  GLKTGMYYLRTKPAA+AIQFT+DK+K+
Sbjct: 708 VAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKL 753



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPT+LWDW+ LK++I+ HG+RNSLL+A MPTA+TAQILGNNESFEP+T+N+Y
Sbjct: 562 LQYDMWNATPTNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLY 621

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+G+FQV+NHHL+ DLV L L+D+NM++++I   GS+Q I  IP+ +K LYKTVWE
Sbjct: 622 VRRVLAGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWE 681

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K +++MA DRGA+ DQSQS N+++AE  YA+M+S+H H W  GLKTGMYYLRTKPAA
Sbjct: 682 MKNKRLIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAA 741

Query: 949 NAIQFTIDKTKM 960
           +AIQFT+DK+K+
Sbjct: 742 DAIQFTVDKSKL 753



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIYLEPWH D++DFL LK+N G EE +ARDL Y LW+PD FMRRV+ D  WSLMC
Sbjct: 290 RKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G +FD+LY +YE EG
Sbjct: 350 PDRCPGLSDVYGNQFDELYAQYEREG 375



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F+ +R+P++ +E++LLN QI ETIYYGALEASCE+A   G Y++Y GSP S
Sbjct: 499 VGIQGLADAFVMLRMPYESDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPAS 558

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPT+LWDW+ LK     +GL+
Sbjct: 559 RGILQYDMWNATPTNLWDWSVLKQRISTHGLR 590



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L+  I+++Q+ETGTPYMLYKDACNRK+NQ NL  I+
Sbjct: 386 LFKFIIETQVETGTPYMLYKDACNRKTNQSNLGTIK 421


>gi|62084010|emb|CAI72629.1| ribonucleotide reductase, large subunit [Euproctis pseudoconspersa
           nucleopolyhedrovirus]
          Length = 769

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/466 (64%), Positives = 384/466 (82%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIYLEPWH D++DFL LK+N G EE +ARDL Y LW+PD FMRRV+ D  WSLMC
Sbjct: 290 RKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMC 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G +FD+LY +YE EGK + QVPAR L+  I+++Q+ETGTPYMLYKDACN
Sbjct: 350 PDRCPGLSDVYGNQFDELYAQYEREGKQVSQVPARDLFKFIIETQVETGTPYMLYKDACN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RK+NQ NLGTIKCSNLC+EI+EY+  D+VAVCNLASI +N  +   +  +NF  LK + K
Sbjct: 410 RKTNQSNLGTIKCSNLCSEIIEYSDADQVAVCNLASICVNRCVE--NGAFNFQTLKRITK 467

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V KNLNKIIDVNFYP+EEAR SN++HRP+G+G+QGLAD F+ +R+P++ +E++LLN QI
Sbjct: 468 TVVKNLNKIIDVNFYPLEEARLSNLKHRPVGVGIQGLADAFVMLRMPYESDEAKLLNTQI 527

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIYYGALEASCE+A   G Y++Y GSP S+GILQYDMW  TPT+LWDW+ LK++I+ H
Sbjct: 528 AETIYYGALEASCELAKIHGAYESYAGSPASRGILQYDMWNATPTNLWDWSVLKQRISTH 587

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQILGNNESFEP+T+N+Y RRVL+G+FQV+NHHL+ DLV L L+
Sbjct: 588 GLRNSLLVAYMPTATTAQILGNNESFEPFTNNLYVRRVLAGDFQVINHHLVDDLVALNLY 647

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D+NM++++I   GS+Q I  IP+ +K LYKTVWE+  K +++MA DRGA+ DQSQS N++
Sbjct: 648 DENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWEMKNKRLIEMAVDRGAYTDQSQSFNVF 707

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +AE  YA+M+S+H H W  GLKTGMYYLRTKPAA+AIQFT+DK+K+
Sbjct: 708 VAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAADAIQFTVDKSKL 753



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 162/192 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPT+LWDW+ LK++I+ HG+RNSLL+A MPTA+TAQILGNNESFEP+T+N+Y
Sbjct: 562 LQYDMWNATPTNLWDWSVLKQRISTHGLRNSLLVAYMPTATTAQILGNNESFEPFTNNLY 621

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+G+FQV+NHHL+ DLV L L+D+NM++++I   GS+Q I  IP+ +K LYKTVWE
Sbjct: 622 VRRVLAGDFQVINHHLVDDLVALNLYDENMRNEIIAAGGSVQRIASIPEHVKQLYKTVWE 681

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K +++MA DRGA+ DQSQS N+++AE  YA+M+S+H H W  GLKTGMYYLRTKPAA
Sbjct: 682 MKNKRLIEMAVDRGAYTDQSQSFNVFVAEPTYARMTSIHMHAWSSGLKTGMYYLRTKPAA 741

Query: 949 NAIQFTIDKTKM 960
           +AIQFT+DK+K+
Sbjct: 742 DAIQFTVDKSKL 753



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIYLEPWH D++DFL LK+N G EE +ARDL Y LW+PD FMRRV+ D  WSLMC
Sbjct: 290 RKGAMAIYLEPWHVDVYDFLNLKRNMGAEEKKARDLLYALWVPDLFMRRVKDDGVWSLMC 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G +FD+LY +YE EG
Sbjct: 350 PDRCPGLSDVYGNQFDELYAQYEREG 375



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 73/92 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F+ +R+P++ +E++LLN QI ETIYYGALEASCE+A   G Y++Y GSP S
Sbjct: 499 VGIQGLADAFVMLRMPYESDEAKLLNTQIAETIYYGALEASCELAKIHGAYESYAGSPAS 558

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW  TPT+LWDW+ LK     +GL+
Sbjct: 559 RGILQYDMWNATPTNLWDWSVLKQRISTHGLR 590



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L+  I+++Q+ETGTPYMLYKDACNRK+NQ NL  I+
Sbjct: 386 LFKFIIETQVETGTPYMLYKDACNRKTNQSNLGTIK 421


>gi|294941788|ref|XP_002783240.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239895655|gb|EER15036.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/495 (64%), Positives = 392/495 (79%), Gaps = 1/495 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV ++  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANGDWTLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D++G++F+ LY+KYE +G   + V A+ LWF IL+SQ ETG PYMLYKD+ N
Sbjct: 356 PNEAPGLQDTYGDEFEALYEKYEKDGIGRKTVKAQSLWFKILESQQETGIPYMLYKDSAN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLC EI+EYTS DEVAVCNLASIALNM+++   +TY+F +L  VAK
Sbjct: 416 RKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTRTYDFGRLHRVAK 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNK+ID N+YPV EAR SNMRHRPIGIGVQGLAD F+ MR P++  E+  LN  I
Sbjct: 476 VVTKNLNKVIDRNYYPVPEARKSNMRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNDI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A EAS E+A RDGPY+T++GSP S+GILQ+DMW VTP +  WDWA+LKE++ K
Sbjct: 536 FETIYHAACEASMELAKRDGPYETFQGSPASEGILQFDMWDVTPDSGRWDWASLKEEVKK 595

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLLIAPMPTASTAQILGNNE+FEPYT NIY RRVL+GEF  VN HL+ DL+ELGL
Sbjct: 596 NGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGL 655

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D +KD++I   GS+Q +E IP +++ LY+TVWEI QK +LDMAA RG +IDQSQSLNI
Sbjct: 656 WNDEIKDKIIRKKGSVQGVEEIPMEIQALYRTVWEIKQKKILDMAAGRGPYIDQSQSLNI 715

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M     AK+SSMHF+GWKLGLKTG YYLRTK AA+AIQFT+D  K+      K   S  
Sbjct: 716 HMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQFTLDAKKVTVESPLKPRSSPL 775

Query: 570 EIQADQEQAMAAMIC 584
           + Q  QE     + C
Sbjct: 776 KPQYVQEDEETCIAC 790



 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 136/221 (61%), Positives = 168/221 (76%), Gaps = 1/221 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW VTP +  WDWA+LKE++ K+G+RNSLLIAPMPTASTAQILGNNE+FEPYT NI
Sbjct: 570 LQFDMWDVTPDSGRWDWASLKEEVKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVL+GEF  VN HL+ DL+ELGLW+D +KD++I   GS+Q +E IP +++ LY+TVW
Sbjct: 630 YVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRKKGSVQGVEEIPMEIQALYRTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +LDMAA RG +IDQSQSLNI+M     AK+SSMHF+GWKLGLKTG YYLRTK A
Sbjct: 690 EIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           A+AIQFT+D  K+      K   S  + Q  QE     + C
Sbjct: 750 ADAIQFTLDAKKVTVESPLKPRSSPLKPQYVQEDEETCIAC 790



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 17/154 (11%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV ++  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEHRARDLFYALWIPDLFMKRVMANGDWTLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN   GL D++G++F+ LY+KYE +G+      A +++        F  LE ++ TG   
Sbjct: 356 PNEAPGLQDTYGDEFEALYEKYEKDGIGRKTVKAQSLW--------FKILESQQETG--- 404

Query: 121 FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTC 154
                + Y L+  D   R+       ++ C N C
Sbjct: 405 -----IPYMLY-KDSANRKSNQKNLGTIRCSNLC 432



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MR P++  E+  LN  IFETIY+ A EAS E+A RDGPY+T++GSP S
Sbjct: 507 IGVQGLADAFLLMRFPYESPEALKLNNDIFETIYHAACEASMELAKRDGPYETFQGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +GILQ+DMW VTP +  WDWA+LK
Sbjct: 567 EGILQFDMWDVTPDSGRWDWASLK 590



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 30/40 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V    LWF IL+SQ ETG PYMLYKD+ NRKSNQ+NL  I
Sbjct: 387 VKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTI 426



 Score = 42.0 bits (97), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q + +    GVT T+L D  A +  A +  +   F+ L ++I             ++ 
Sbjct: 41  ITQKVAEGIYPGVTTTEL-DSLAAETCAYMSQVHPDFSTLAARIAVSN--------LHKN 91

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++   E + ELYN+ +   G  +P++S++ Y +++ NAD+L+ AI YDRDF+Y++FGFK
Sbjct: 92  THESFSETVTELYNITDSR-GRSSPLVSEEVYNLVLMNADKLDKAIDYDRDFDYDYFGFK 150


>gi|22164662|ref|NP_671575.1| EVM057 [Ectromelia virus]
 gi|22123803|gb|AAM92361.1|AF523264_57 EVM057 [Ectromelia virus]
 gi|383866777|gb|AFH54620.1| ribonucleotide reductase large subunit [Ectromelia virus]
          Length = 771

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/471 (66%), Positives = 388/471 (82%), Gaps = 3/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV  D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL ++WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PNECPGLDNAWGDEFERLYTQYEREKRYKNIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALN+++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNVFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W +LK+KI  H
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYAGSYASNGILQYDLWNVVPSDLWNWESLKDKIRSH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K+++I + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTK A++ IQFT+DK K+  +M 
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAASSPIQFTLDKEKIKPSMV 760



 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 168/197 (85%), Gaps = 1/197 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W +LK+KI  HG+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWESLKDKIRSHGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K+++I + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNEEIKNRIIADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTK A+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKAAS 743

Query: 949 NAIQFTIDKTKMANAMA 965
           + IQFT+DK K+  +M 
Sbjct: 744 SPIQFTLDKEKIKPSMV 760



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV  D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVNDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL ++WG++F+ LY +YE E
Sbjct: 353 PNECPGLDNAWGDEFERLYTQYERE 377



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 76/104 (73%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W +LK     +GL+
Sbjct: 550 GPYDTYAGSYASNGILQYDLWNVVPSDLWNWESLKDKIRSHGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 389 VWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|170088813|ref|XP_001875629.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
 gi|164648889|gb|EDR13131.1| ribonucleotide reductase alpha subunit [Laccaria bicolor S238N-H82]
          Length = 881

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/484 (64%), Positives = 393/484 (81%), Gaps = 2/484 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL +    +F+ LY+KYE EG+  + +PA+KLW+AIL++QIETG P+M+YKD  N
Sbjct: 354 PNEAAGLGEVHSAEFEALYEKYEKEGRARKSIPAQKLWYAILEAQIETGGPFMVYKDHAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY+S +E AVCNLAS+AL  +I  ++  Y+F KL DV K
Sbjct: 414 SKSNQKNLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFI--SNGKYDFQKLHDVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YP+ EAR SNMRHRPIG+GVQGLAD F+ +R+PFD   ++ LN QI
Sbjct: 472 VVAYNLNRIIDVNYYPIPEARLSNMRHRPIGVGVQGLADTFMALRMPFDSPAAKELNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEAS E+A RDGPY+T+ GSP   G LQYD+WGVTPT LWDW +LKEKIA+ 
Sbjct: 532 FETIYHGALEASSELAERDGPYETWMGSPAQLGQLQYDLWGVTPTGLWDWTSLKEKIART 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLR+LV+LGLW
Sbjct: 592 GLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRELVDLGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK+ +I +NGS+Q+I  IP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 652 DDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +      +++SMHF+GWK GLKTGMYYLRT+PAA+AIQFT+D++ +      K   ++ +
Sbjct: 712 LQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAASAIQFTVDQSLLKEVKQQKTDAAKVK 771

Query: 571 IQAD 574
            QA+
Sbjct: 772 AQAN 775



 Score =  298 bits (764), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 137/210 (65%), Positives = 173/210 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPT LWDW +LKEKIA+ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 LQYDLWGVTPTGLWDWTSLKEKIARTGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLR+LV+LGLWDDNMK+ +I +NGS+Q+I  IP  +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRELVDLGLWDDNMKNMIIAHNGSVQNIPTIPDDVKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKVLDLAADRGAFICQSQSLNVHLQAPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQAD 978
           +AIQFT+D++ +      K   ++ + QA+
Sbjct: 746 SAIQFTVDQSLLKEVKQQKTDAAKVKAQAN 775



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL +    +F+ LY+KYE EG
Sbjct: 354 PNEAAGLGEVHSAEFEALYEKYEKEG 379



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD   ++ LN QIFETIY+GALEAS E+A RDGPY+T+ GSP  
Sbjct: 503 VGVQGLADTFMALRMPFDSPAAKELNIQIFETIYHGALEASSELAERDGPYETWMGSPAQ 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQYD+WGVTPT LWDW +LK      GL+
Sbjct: 563 LGQLQYDLWGVTPTGLWDWTSLKEKIARTGLR 594



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 9/119 (7%)

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKS 711
           +Q ++     GVT  +L + AA +  A +      +A+L ++I             ++++
Sbjct: 41  TQKVVAGVYHGVTTVELDNLAA-ETAAYLTTKHPDYAVLAARIAVSN--------LHKET 91

Query: 712 NQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            +   +VI++LY  VN +      MIS + YEI+ +NA+ L+SAIIY+RDF++NFFGFK
Sbjct: 92  KKNFSQVIKDLYEYVNPKNRRPAGMISQEIYEIVRENAEALDSAIIYNRDFSFNFFGFK 150



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++QIETG P+M+YKD  N KSNQ+NL  I+
Sbjct: 389 KLWYAILEAQIETGGPFMVYKDHANSKSNQKNLGTIK 425


>gi|401395878|ref|XP_003879702.1| putative ribonucleoside-diphosphate reductase, large subunit
           [Neospora caninum Liverpool]
 gi|325114109|emb|CBZ49667.1| putative ribonucleoside-diphosphate reductase, large subunit
           [Neospora caninum Liverpool]
          Length = 886

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/494 (64%), Positives = 401/494 (81%), Gaps = 8/494 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 351 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 410

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL++ WGE+F +LY++YE EG+  + +PA+ LWFAIL +QIETGTPYMLYKDACN
Sbjct: 411 PNECPGLTEVWGEEFKELYERYEREGRGRKTIPAQHLWFAILQAQIETGTPYMLYKDACN 470

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTE+VEYTSKDEVAVCNLAS++L  +++   +T+++  LK + K
Sbjct: 471 RKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRETRTFDYEHLKKIVK 530

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN++ID N+YPV EA+NSN+RHRP+G+GVQGLAD F+ +R PFD  E+RLLN+ I
Sbjct: 531 VMTRNLNRVIDRNYYPVPEAKNSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARLLNRNI 590

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FE IYY ALEASCE+AA +GPY TYEGSP+SQGILQ+DMWGVTP+  L DW+AL+EKI K
Sbjct: 591 FECIYYAALEASCELAAEEGPYATYEGSPMSQGILQFDMWGVTPSSGLCDWSALREKIKK 650

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL++PMPTAST+QILGNNE+FEPYTSNIY RRVLSGEF VVN HLLRDL+E  L
Sbjct: 651 HGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLLERDL 710

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W +++K QLI +NG + +++ IP  LK LYKTVWEI Q+ VLD+A DR  +IDQS SLNI
Sbjct: 711 WSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRSPYIDQSHSLNI 770

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-------KTKMANAMAS 562
           +M    YAK+S+MHF+GW+ GLKTG+YYLRT+ AA+AI+FT+D       K K++ +  S
Sbjct: 771 HMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDSQLAMSAKAKLSGSTFS 830

Query: 563 KDARSQEEIQADQE 576
               +     AD+E
Sbjct: 831 GVLTTTTSSAADEE 844



 Score =  261 bits (666), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 133/220 (60%), Positives = 169/220 (76%), Gaps = 8/220 (3%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP+  L DW+AL+EKI KHGVRNSLL++PMPTAST+QILGNNE+FEPYTSNI
Sbjct: 625 LQFDMWGVTPSSGLCDWSALREKIKKHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNI 684

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLLRDL+E  LW +++K QLI +NG + +++ IP  LK LYKTVW
Sbjct: 685 YYRRVLSGEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGCVLNMDVIPDDLKALYKTVW 744

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ VLD+A DR  +IDQS SLNI+M    YAK+S+MHF+GW+ GLKTG+YYLRT+ A
Sbjct: 745 EIKQRVVLDLAIDRSPYIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAA 804

Query: 948 ANAIQFTID-------KTKMANAMASKDTRSQEEIQADQE 980
           A+AI+FT+D       K K++ +  S    +     AD+E
Sbjct: 805 ADAIKFTVDSQLAMSAKAKLSGSTFSGVLTTTTSSAADEE 844



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 351 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 410

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL++ WGE+F +LY++YE EG
Sbjct: 411 PNECPGLTEVWGEEFKELYERYEREG 436



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 75/93 (80%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PFD  E+RLLN+ IFE IYY ALEASCE+AA +GPY TYEGSP+S
Sbjct: 562 LGVQGLADAFMLLRYPFDSPEARLLNRNIFECIYYAALEASCELAAEEGPYATYEGSPMS 621

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           QGILQ+DMWGVTP+  L DW+AL+     +G++
Sbjct: 622 QGILQFDMWGVTPSSGLCDWSALREKIKKHGVR 654



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL +QIETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 447 LWFAILQAQIETGTPYMLYKDACNRKSNQKNLGTIK 482



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     G+  ++L D AA +  A +      F+ L ++I          D  ++ 
Sbjct: 98  VAQAVINGMYAGIRTSELDDLAA-QTSAYMAASHPDFSKLAARIAI--------DNLHKN 148

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +    L VIE+L+  V+K  G    ++S + YE +  N   LN A+ Y RDF Y++FGFK
Sbjct: 149 TTDNFLTVIEQLHGYVDK-LGREAKLVSTEVYEFVKANEKALNEALNYSRDFEYDYFGFK 207


>gi|392591881|gb|EIW81208.1| ribonucleotide reductase alpha subunit [Coniophora puteana
           RWD-64-598 SS2]
          Length = 884

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/464 (67%), Positives = 383/464 (82%), Gaps = 2/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DI DF +L+KN GKEE RARDLFY LWI D FM+RVE+D  WSL C
Sbjct: 294 RPGAFAIYIEPWHPDILDFCDLRKNHGKEESRARDLFYALWINDLFMKRVEADEDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE EG+  R +PA+KLW++IL+SQIETG P+MLYKD+ N
Sbjct: 354 PNEAPGLADVWGDEFETLYLKYEKEGRARRTMPAQKLWYSILESQIETGGPFMLYKDSAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EY+S +E AVCNLAS+AL  +I   D  Y+F  L DV+K
Sbjct: 414 RKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASLALPTFIR--DGKYDFKTLHDVSK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLN+IID N+YPV EA  SNMRHRPIG+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 472 VLTYNLNRIIDRNYYPVPEAERSNMRHRPIGLGVQGLADAFMILRMPFDSPEARRLNLQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS E+A + GPY+TY+GSP  QG LQYD+WGVTPTDLWDW  LK KIA+H
Sbjct: 532 FETIYHAALEASSELAEKLGPYETYKGSPAEQGQLQYDLWGVTPTDLWDWTELKAKIARH 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVL+GEFQVV   LLRDLVE  LW
Sbjct: 592 GLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLAGEFQVVCPWLLRDLVERDLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+ +I +NGS+ +I  IP+ +K +YKTVWEI QK V+D+AADRGAFI QSQSLN++
Sbjct: 652 NDDMKNMIIAHNGSVANIPSIPEDIKQIYKTVWEISQKVVIDLAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +      +++SMHF+GWK GLKTGMYYLRT+PA+ AIQFTI+++
Sbjct: 712 LQAPTLRQLTSMHFYGWKKGLKTGMYYLRTRPASQAIQFTIEQS 755



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 162/190 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTPTDLWDW  LK KIA+HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 566 LQYDLWGVTPTDLWDWTELKAKIARHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLRDLVE  LW+D+MK+ +I +NGS+ +I  IP+ +K +YKTVWE
Sbjct: 626 TRRVLAGEFQVVCPWLLRDLVERDLWNDDMKNMIIAHNGSVANIPSIPEDIKQIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PA+
Sbjct: 686 ISQKVVIDLAADRGAFICQSQSLNVHLQAPTLRQLTSMHFYGWKKGLKTGMYYLRTRPAS 745

Query: 949 NAIQFTIDKT 958
            AIQFTI+++
Sbjct: 746 QAIQFTIEQS 755



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DI DF +L+KN GKEE RARDLFY LWI D FM+RVE+D  WSL C
Sbjct: 294 RPGAFAIYIEPWHPDILDFCDLRKNHGKEESRARDLFYALWINDLFMKRVEADEDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE EG
Sbjct: 354 PNEAPGLADVWGDEFETLYLKYEKEG 379



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ ALEAS E+A + GPY+TY+GSP  
Sbjct: 503 LGVQGLADAFMILRMPFDSPEARRLNLQIFETIYHAALEASSELAEKLGPYETYKGSPAE 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQYD+WGVTPTDLWDW  LK     +GL+
Sbjct: 563 QGQLQYDLWGVTPTDLWDWTELKAKIARHGLR 594



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V++ ++     GVT  +L + AA +  A +      +AIL ++I       L+K+   +K
Sbjct: 40  VAKKVIAGVYQGVTTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN---LHKE--TKK 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S  Q   V ++LY  VN + G    M+S + Y+I+  NA+ L+SAIIY+RDF+YN+FGFK
Sbjct: 94  SFSQ---VTKDLYEYVNPKNGKLASMVSKETYDIVQANAELLDSAIIYNRDFSYNYFGFK 150



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL+SQIETG P+MLYKD+ NRKSNQQNL  I+
Sbjct: 389 KLWYSILESQIETGGPFMLYKDSANRKSNQQNLGTIK 425


>gi|405120842|gb|AFR95612.1| ribonucleoside-diphosphate reductase large chain [Cryptococcus
           neoformans var. grubii H99]
          Length = 863

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/469 (66%), Positives = 384/469 (81%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D +GE+F+ LY+ YE +GK  + + A+KLWFAIL++Q ETG PY+ YKDA N
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERQGKGRKTIKAQKLWFAILEAQTETGVPYICYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTIK SNLCTEI+EY+S DEVAVCNLAS+AL  +++   + Y+F KL ++ K
Sbjct: 415 SKSNQKHLGTIKSSNLCTEIMEYSSPDEVAVCNLASLALPAFVDLERRVYDFKKLHEITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNL+ +I  N+YPV EARNSNMRHRP+G+GVQGLAD F+ +R+PFD  E+R LN QI
Sbjct: 475 VVTKNLDTVITRNYYPVPEARNSNMRHRPVGLGVQGLADAFMALRMPFDSAEARELNIQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEASCE+A   G Y++YEGSP+S+GILQYDMWG  PTDLWDW  LK KIA++
Sbjct: 535 FETIYHAALEASCELAEEFGTYESYEGSPISKGILQYDMWGRVPTDLWDWTELKAKIAQN 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTS +Y+RRVLSG+FQVV   LLRDL+ L LW
Sbjct: 595 GVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLDLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DDNMK  +I   GSIQ I  IP  LK +Y+TVWEI QK V+D+AADRGAFIDQSQSLNI+
Sbjct: 655 DDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWEISQKAVIDLAADRGAFIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           ++  ++ +++SMHF+GWK GLKTG YYLRT+P+ANAIQFT+D + +  A
Sbjct: 715 LSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSANAIQFTVDASTLKTA 763



 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 159/195 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWG  PTDLWDW  LK KIA++GVRNSLL+APMPTAST+QILG NE FEPYTS +Y
Sbjct: 569 LQYDMWGRVPTDLWDWTELKAKIAQNGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSG+FQVV   LLRDL+ L LWDDNMK  +I   GSIQ I  IP  LK +Y+TVWE
Sbjct: 629 ARRVLSGDFQVVCPWLLRDLINLDLWDDNMKQLIIAAGGSIQSIPNIPDDLKKIYRTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFIDQSQSLNI+++  ++ +++SMHF+GWK GLKTG YYLRT+P+A
Sbjct: 689 ISQKAVIDLAADRGAFIDQSQSLNIHLSNPSFPQLTSMHFYGWKRGLKTGCYYLRTRPSA 748

Query: 949 NAIQFTIDKTKMANA 963
           NAIQFT+D + +  A
Sbjct: 749 NAIQFTVDASTLKTA 763



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDF++L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADVFDFIDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D +GE+F+ LY+ YE +G
Sbjct: 355 PAECPGLADVYGEEFEKLYESYERQG 380



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD  E+R LN QIFETIY+ ALEASCE+A   G Y++YEGSP+S
Sbjct: 506 LGVQGLADAFMALRMPFDSAEARELNIQIFETIYHAALEASCELAEEFGTYESYEGSPIS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWG  PTDLWDW  LK      G++
Sbjct: 566 KGILQYDMWGRVPTDLWDWTELKAKIAQNGVR 597



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E + ++Q ++Q    G+T  +L + AA +  A +      +AIL ++I            
Sbjct: 37  EPAEITQKVVQGIHAGITTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN-------- 87

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +    V+ +L+  VN +TG  +PMI D  Y+++M N D L+SAIIYDRDF YN+
Sbjct: 88  LHKETKKVFSAVVHDLHAWVNPKTGKHSPMIDDDVYKVVMDNKDILDSAIIYDRDFAYNY 147

Query: 767 FGFK 770
           FGFK
Sbjct: 148 FGFK 151



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL++Q ETG PY+ YKDA N KSNQ++L  I+
Sbjct: 390 KLWFAILEAQTETGVPYICYKDAANSKSNQKHLGTIK 426


>gi|20178449|ref|NP_619870.1| CPXV083 protein [Cowpox virus]
 gi|20153067|gb|AAM13528.1|AF482758_79 CPXV083 protein [Cowpox virus]
          Length = 771

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 387/466 (83%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W V P+DLWDW +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVPSDLWDWESLKDKIRSY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLWDW +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWDWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY +YE E
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERE 377



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 77/104 (74%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W V P+DLWDW +LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNVVPSDLWDWESLKDKIRSYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|326502586|dbj|BAJ95356.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 812

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/522 (62%), Positives = 401/522 (76%), Gaps = 23/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DI++FL+L+KN GKEE RARDLFY LWIPD FM RV+ + QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIYEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQKNEQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F +LY KYE EGK  + V A+ LWF IL +QIETGTPYMLYKD+CN
Sbjct: 353 PSEAPGLADCWGDEFQNLYNKYEREGKAKKIVSAQSLWFEILKAQIETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEIVE+TS  E AVCNLASIAL  ++         +PA     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEFTSPTETAVCNLASIALPRFVREKGVPIESHPAKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  +VT NLNKIID+N+YP+E AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 IGSKNRYFDFDKLAEITSVVTWNLNKIIDINYYPIETARRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+AS EIAA++GPY+TY+G PVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYDGCPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDW A++  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSDRWDWPAIRGMISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+ +I ++GS+Q I  IP  LK +YKTVWEI QKTV+D
Sbjct: 653 FVVVNKHLLHDLTEMGIWSPVLKNNIIYDDGSVQKITEIPDDLKAIYKTVWEIKQKTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHTWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + + +    K A ++EE   D E  MA + C  +N+EDC+ 
Sbjct: 773 TSLLKD---KKPANAEEE--EDLEAKMAQVTCSLNNREDCLA 809



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 137/226 (60%), Positives = 172/226 (76%), Gaps = 5/226 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D WDW A++  I+K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSDRWDWPAIRGMISKVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+ +I ++GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGIWSPVLKNNIIYDDGSVQKITEIPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KTV+DMA DRG +IDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTVVDMAVDRGCYIDQSQSLNIHMDQANSGKLTSLHFHTWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + + +    K   ++EE   D E  MA + C  +N+EDCL
Sbjct: 768 KFTVDTSLLKD---KKPANAEEE--EDLEAKMAQVTCSLNNREDCL 808



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DI++FL+L+KN GKEE RARDLFY LWIPD FM RV+ + QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIYEFLDLRKNHGKEENRARDLFYALWIPDLFMERVQKNEQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WG++F +LY KYE EG
Sbjct: 353 PSEAPGLADCWGDEFQNLYNKYEREG 378



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS EIAA++GPY+TY+G PVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKASAEIAAKEGPYETYDGCPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMW V P+D WDW A++ +    GL+
Sbjct: 582 KGILQPDMWNVVPSDRWDWPAIRGMISKVGLR 613



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++ +Y   N+ +G   P+I+D  YEIIMKNA RL+S IIYDRDF+Y+FFGFK
Sbjct: 96  ETVKVMYTHFNERSGLMAPLIADDVYEIIMKNATRLDSEIIYDRDFDYDFFGFK 149



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 379 KAKKIVSAQSLWFEILKAQIETGTPYMLYKDSCNRKSNQQNLGTIK 424


>gi|224083844|ref|XP_002307143.1| predicted protein [Populus trichocarpa]
 gi|222856592|gb|EEE94139.1| predicted protein [Populus trichocarpa]
          Length = 817

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/523 (62%), Positives = 402/523 (76%), Gaps = 20/523 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F++LY +YE  GK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PNEAPGLADCWGKEFEELYTRYERNGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++         +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPVESHPSKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V  +VT NLNKIIDVN+YPVE AR SN RHRPIGIGVQGLAD FI
Sbjct: 473 RGFKSRYFDFEKLAEVTGVVTSNLNKIIDVNYYPVETARRSNFRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+AS EIAAR+GPY+TYEGSPVS+GILQ DMWGV
Sbjct: 533 LLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVSKGILQPDMWGV 592

Query: 373 TPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           TP++L WDW AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSG
Sbjct: 593 TPSNLLWDWDALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSG 652

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN HLL DL E+GLW   +K+++I  +GS+Q+I  IP  LK +YKTVWEI QKT++
Sbjct: 653 EFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEIPNDLKFIYKTVWEIKQKTLV 712

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+
Sbjct: 713 DMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTV 772

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
           D + + +     D  +      D  + MA M+C   N++DC+ 
Sbjct: 773 DTSVLQDKKLKSDGAAAAAADDDDTK-MAQMVCSLANRDDCLA 814



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 176/227 (77%), Gaps = 2/227 (0%)

Query: 772 DMWGVTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
           DMWGVTP++L WDW AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSR
Sbjct: 588 DMWGVTPSNLLWDWDALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSR 647

Query: 831 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 890
           RVLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q+I  IP  LK +YKTVWEI 
Sbjct: 648 RVLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQNIPEIPNDLKFIYKTVWEIK 707

Query: 891 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
           QKT++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+A
Sbjct: 708 QKTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADA 767

Query: 951 IQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           I+FT+D + + +     D  +      D  + MA M+C   N++DCL
Sbjct: 768 IKFTVDTSVLQDKKLKSDGAAAAAADDDDTK-MAQMVCSLANRDDCL 813



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLRKNHGKEENRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F++LY +YE  G
Sbjct: 353 PNEAPGLADCWGKEFEELYTRYERNG 378



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 99/158 (62%), Gaps = 11/158 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK IFETIYY AL+AS EIAAR+GPY+TYEGSPVS
Sbjct: 522 IGVQGLADTFILLGMSFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYEGSPVS 581

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR-- 709
           +GILQ DMWGVTP++ LWDW AL+ +    G++    +L       T  +L  + C    
Sbjct: 582 KGILQPDMWGVTPSNLLWDWDALREMISKNGVRNSL-LLAPMPTASTSQILGNNECFEPY 640

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 641 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNK 678



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 709 RKSNQQNL-EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
            K+ Q++  E I+ +YN  N ++G +  +I+D  YEIIMKN+ RL+S IIYDRDF+Y++F
Sbjct: 87  HKNTQKSFSETIKIMYNHFNDKSGLKAALIADDIYEIIMKNSARLDSEIIYDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424


>gi|356509012|ref|XP_003523246.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Glycine max]
          Length = 808

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/522 (59%), Positives = 399/522 (76%), Gaps = 27/522 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WGEKF++LY +YE EGK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PSEAPGLADCWGEKFEELYHRYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EY+S  E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  +VT NLNK+IDVN+YPVE A+ SN+RHRPIGIGVQGLAD FI
Sbjct: 473 TGSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LN++IFETIYY AL+ SC++AA++GPY+TY GSP+S+GILQ DMWGV
Sbjct: 533 LLGMAFDSPEAQQLNQEIFETIYYHALKTSCDLAAKEGPYETYSGSPLSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP++ WDW AL+E I+ +G RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSNRWDWDALREMISSNGARNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+Q I  +P  LK +YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEMPAVLKSIYKTVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +         + +  ++ D    MA M+C   N+E+C+ 
Sbjct: 773 TSAL---------KEKSNVEYDDNTKMAQMVCSLTNREECLA 805



 Score =  292 bits (747), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 173/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP++ WDW AL+E I+ +G RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSNRWDWDALREMISSNGARNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q I  +P  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEMPAVLKSIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++DMAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + +         + +  ++ D    MA M+C   N+E+CL
Sbjct: 768 KFTVDTSAL---------KEKSNVEYDDNTKMAQMVCSLTNREECL 804



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WGEKF++LY +YE EG
Sbjct: 353 PSEAPGLADCWGEKFEELYHRYEREG 378



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LN++IFETIYY AL+ SC++AA++GPY+TY GSP+S
Sbjct: 522 IGVQGLADTFILLGMAFDSPEAQQLNQEIFETIYYHALKTSCDLAAKEGPYETYSGSPLS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVTP++ WDW AL+ +    G +   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWGVTPSNRWDWDALREMISSNGAR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNK 677



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y   ++ +G + P+I+D  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKIMYYHFSERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424


>gi|325558457|gb|ADZ29836.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/466 (66%), Positives = 386/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLWDW +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWDWESLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLWDW +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWDWESLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY +YE E
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERE 377



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 76/104 (73%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLWDW +LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWDWESLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|402223227|gb|EJU03292.1| ribonucleotide reductase alpha subunit [Dacryopinax sp. DJM-731
           SS1]
          Length = 916

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/506 (64%), Positives = 399/506 (78%), Gaps = 9/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWI D FM+RVESD  WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWSLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   G+S+   E F+ LY +YE EG+  + + A+KLW+AILD+QIETG P+MLYKDA N
Sbjct: 354 PNEAPGMSEVHSEDFEALYTRYEREGRARQTIKAQKLWYAILDAQIETGGPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  +I   D  Y+F KL  VAK
Sbjct: 414 SKSNQKNLGTIKSSNLCTEIMEYSAPDEVAVCNLASIALPSFIQ--DGQYDFEKLHAVAK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YPV EAR SNMRHRPIG+GVQGLAD F+ +R+PFD  E+R LN+ I
Sbjct: 472 VVAFNLNRIIDVNYYPVPEARRSNMRHRPIGVGVQGLADAFMALRMPFDSPEARQLNRDI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALEAS E+A  DG Y+T+EGSP S+G LQ+D+WGV P+D WDWA LKEKI++ 
Sbjct: 532 FETIYHAALEASNEMAETDGAYETFEGSPASRGELQFDLWGVMPSDRWDWAGLKEKISRT 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILGNNE FEPYTS IY+RRVL+GEFQVV   LLRDLV+LGLW
Sbjct: 592 GLRNSLLLAPMPTASTSQILGNNECFEPYTSMIYARRVLAGEFQVVCPWLLRDLVDLGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D M+D +I + GSIQ+I GIP  +K +YKTVWEI QK +LD+AADRGAFI QSQSLN++
Sbjct: 652 NDQMRDMIIASGGSIQNIPGIPDNIKAIYKTVWEISQKKILDLAADRGAFICQSQSLNVH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D + +  A   KDA++   
Sbjct: 712 LQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTLDASVIKQA---KDAQNGVS 768

Query: 571 IQADQEQAMAAMICRRD-NKEDCIGV 595
             A   QA+ AM  R+  NK   I V
Sbjct: 769 APA---QAVRAMKPRQSTNKYASIAV 791



 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 135/215 (62%), Positives = 170/215 (79%), Gaps = 3/215 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV P+D WDWA LKEKI++ G+RNSLL+APMPTAST+QILGNNE FEPYTS IY
Sbjct: 566 LQFDLWGVMPSDRWDWAGLKEKISRTGLRNSLLLAPMPTASTSQILGNNECFEPYTSMIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLRDLV+LGLW+D M+D +I + GSIQ+I GIP  +K +YKTVWE
Sbjct: 626 ARRVLAGEFQVVCPWLLRDLVDLGLWNDQMRDMIIASGGSIQNIPGIPDNIKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +LD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKKILDLAADRGAFICQSQSLNVHLQSPTLGQLTSMHFYGWKKGLKTGMYYLRTRPAA 745

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAM 983
            AIQFT+D + +  A   KD ++     A   +AM
Sbjct: 746 QAIQFTLDASVIKQA---KDAQNGVSAPAQAVRAM 777



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFY LWI D FM+RVESD  WSL C
Sbjct: 294 RPGAFAIYIEPWHADVFEFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWSLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   G+S+   E F+ LY +YE EG
Sbjct: 354 PNEAPGMSEVHSEDFEALYTRYEREG 379



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +R+PFD  E+R LN+ IFETIY+ ALEAS E+A  D
Sbjct: 491 ARRSNMRHRPIGVGVQGLADAFMALRMPFDSPEARQLNRDIFETIYHAALEASNEMAETD 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 675
           G Y+T+EGSP S+G LQ+D+WGV P+D WDWA LK
Sbjct: 551 GAYETFEGSPASRGELQFDLWGVMPSDRWDWAGLK 585



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VIE+LY  VN + G  +PMI+   Y+I+ +N + L+SAIIY+RDF++ FFGFK
Sbjct: 97  QVIEDLYTYVNPKNGRHSPMIAKDIYDIVQENKEVLDSAIIYERDFHHQFFGFK 150



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AILD+QIETG P+MLYKDA N KSNQ+NL  I+
Sbjct: 389 KLWYAILDAQIETGGPFMLYKDAANSKSNQKNLGTIK 425


>gi|449448442|ref|XP_004141975.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Cucumis sativus]
 gi|449497699|ref|XP_004160484.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Cucumis sativus]
          Length = 807

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/522 (60%), Positives = 399/522 (76%), Gaps = 28/522 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY  YE +GK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PNEAPGLADCWGEEFEKLYIGYEQQGKAKKVVKAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EY+S  E AVCNL+SIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLSSIALPRFVREKGVSIESHPSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL ++  +VT NLNKIIDVN+YPVE A+ SN+RHRPIGIGVQGLAD FI
Sbjct: 473 RDSKNRYFDFDKLAEITALVTTNLNKIIDVNYYPVETAKRSNLRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFE IYY AL+ASCE+AA +GPY+TY GSPVS+GILQ+DMWGV
Sbjct: 533 LLGMSFDSPEAQQLNKDIFEAIYYHALKASCELAAVEGPYETYAGSPVSKGILQFDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  WDW  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSKRWDWEGLRAQIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ++GLW   +K+++I  NGS+Q+I  IP  L+ +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTDMGLWCPALKNKIIYANGSVQNIAEIPDDLRAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +     S+D  ++          MA M+C   N+EDC+ 
Sbjct: 773 PSLLKEKSNSEDDSTK----------MAQMVCSLTNREDCMA 804



 Score =  295 bits (756), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 176/229 (76%), Gaps = 10/229 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTP+  WDW  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQFDMWGVTPSKRWDWEGLRAQIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN HLL DL ++GLW   +K+++I  NGS+Q+I  IP  L+ +YKTVWE
Sbjct: 645 SRRVLSGEFVVVNKHLLHDLTDMGLWCPALKNKIIYANGSVQNIAEIPDDLRAIYKTVWE 704

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA
Sbjct: 705 IKQKTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAA 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D + +     S+D  ++          MA M+C   N+EDC+
Sbjct: 765 DAIKFTVDPSLLKEKSNSEDDSTK----------MAQMVCSLTNREDCM 803



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM+RV+S+ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMQRVQSNGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY  YE +G
Sbjct: 353 PNEAPGLADCWGEEFEKLYIGYEQQG 378



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 113/204 (55%), Gaps = 20/204 (9%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK IFE IYY AL+ASCE+AA +GPY+TY GSPVS
Sbjct: 522 IGVQGLADTFILLGMSFDSPEAQQLNKDIFEAIYYHALKASCELAAVEGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ+DMWGVTP+  WDW  L+     +G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQFDMWGVTPSKRWDWEGLRAQIAQHGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDF 762
            SN  +  V+   + +VNK       + G   P + +K   II  N    N A I D   
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWCPALKNK---IIYANGSVQNIAEIPD--- 693

Query: 763 NYNFFGFKYDMWGVTPTDLWDWAA 786
             +       +W +    L D AA
Sbjct: 694 --DLRAIYKTVWEIKQKTLVDMAA 715



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + I ++Y  V++ +G +  +I+D  YE+IMKNA RL+S IIYDRDF+Y+FFGFK
Sbjct: 96  DTIRDMYYHVSERSGQKAALIADDVYEVIMKNAARLDSEIIYDRDFDYDFFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVKAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424


>gi|440751432|ref|ZP_20930665.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Mariniradius saccharolyticus AK6]
 gi|436480074|gb|ELP36339.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Mariniradius saccharolyticus AK6]
          Length = 801

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/506 (62%), Positives = 399/506 (78%), Gaps = 6/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D  GE+F+ LY+KYE EG+    V A++LWF IL+SQIETGTPYMLYKD+ N
Sbjct: 353 PNEAPGLADCHGEEFERLYEKYEKEGRAREVVKAQELWFEILESQIETGTPYMLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN--PADKTY-NFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYT+ DEVAVCNLASIAL  ++   P  K + +  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVTEGPDGKLFFDHNKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+ T+NLNK+ID+N+YPVEEAR SN RHRPIG+GVQGLAD FI +R+PFD  E++ LN
Sbjct: 473 ITKVATRNLNKVIDINYYPVEEARRSNFRHRPIGLGVQGLADAFIMLRMPFDSAEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIYY A+E S E+A   G Y+T+EGSP S+GILQ+DMWGVTP +  W+W  LK  
Sbjct: 533 EDIFETIYYAAVETSMELAKTQGSYETFEGSPASKGILQFDMWGVTPKSGRWNWDELKVN 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + +HG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL++DL++
Sbjct: 593 VIQHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMKDLIK 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D MK++LI  NGS+Q+I GIPQ +KD+YKTVWE+ Q+ ++DMAADRGA+I QSQS
Sbjct: 653 LGLWNDTMKNRLIAANGSVQNIPGIPQNIKDIYKTVWELSQRVIIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N++M + N+ K++SMHF+ WK GLKTGMYYLR++ AA AIQFT+DK+ +          
Sbjct: 713 MNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAAAAIQFTVDKSALEPDKTIVAQT 772

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
              ++   Q+Q   A+ C  DN EDC
Sbjct: 773 PTMDLTKSQKQ--GAIACSLDNPEDC 796



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 177/229 (77%), Gaps = 3/229 (1%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP +  W+W  LK  + +HG+RNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 LQFDMWGVTPKSGRWNWDELKVNVIQHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL++LGLW+D MK++LI  NGS+Q+I GIPQ +KD+YKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMKDLIKLGLWNDTMKNRLIAANGSVQNIPGIPQNIKDIYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+ Q+ ++DMAADRGA+I QSQS+N++M + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 ELSQRVIIDMAADRGAYICQSQSMNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A AIQFT+DK+ +             ++   Q+Q   A+ C  DN EDC
Sbjct: 750 AAAIQFTVDKSALEPDKTIVAQTPTMDLTKSQKQ--GAIACSLDNPEDC 796



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 79/117 (67%), Gaps = 8/117 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTG 117
           PN   GL+D  GE+F+ LY+KYE EG    R        E W    F+ LE +  TG
Sbjct: 353 PNEAPGLADCHGEEFERLYEKYEKEG----RAREVVKAQELW----FEILESQIETG 401



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PFD  E++ LN+ IFETIYY A+E S E+A   G Y+T+EGSP S
Sbjct: 507 LGVQGLADAFIMLRMPFDSAEAKGLNEDIFETIYYAAVETSMELAKTQGSYETFEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP +  W+W  LKV  + +GL+
Sbjct: 567 KGILQFDMWGVTPKSGRWNWDELKVNVIQHGLR 599



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LWF IL+SQIETGTPYMLYKD+ N+KSNQQNL  I+
Sbjct: 383 VVKAQELWFEILESQIETGTPYMLYKDSANKKSNQQNLGTIK 424



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +A+L ++I       L+K      SN      ++ 
Sbjct: 50  GVTTSELDNLAA-EVCASLTVKHPDYAVLAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +Y  +N +TG    +I+   Y ++  +A +L+ AI Y RDF+Y++FGFK
Sbjct: 101 MYTYINPKTGENAALIAPDVYGVVKNHAAKLDEAIDYTRDFDYDYFGFK 149


>gi|294948956|ref|XP_002785979.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|294948958|ref|XP_002785980.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900087|gb|EER17775.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
 gi|239900088|gb|EER17776.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Perkinsus marinus ATCC 50983]
          Length = 792

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/495 (64%), Positives = 393/495 (79%), Gaps = 1/495 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV S+  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVMSNGDWTLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D++G++F+ LY+KYE +G   + V A+ LWF IL+SQ ETG PYMLYKD+ N
Sbjct: 356 PNEAPGLQDTYGDEFEALYEKYEKDGIGRKTVKAQSLWFKILESQQETGIPYMLYKDSAN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+CSNLC EI+EYTS DEVAVCNLASIALNM+++   +TY+F +L  V K
Sbjct: 416 RKSNQKNLGTIRCSNLCCEIIEYTSPDEVAVCNLASIALNMFVDKKTRTYDFDRLHRVTK 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+ID N+YPV EAR SNMRHRPIGIGVQGLAD F+ MR P++  E+  LN +I
Sbjct: 476 VVTRNLNKVIDRNYYPVPEARRSNMRHRPIGIGVQGLADAFLLMRFPYESPEALKLNNEI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A EAS E+A +DGPY+T+EGSP S+GILQ+DMW VTP +  WDW +LKE+I K
Sbjct: 536 FETIYHAACEASMELAKKDGPYETFEGSPASEGILQFDMWDVTPDSGRWDWNSLKEEIKK 595

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLLIAPMPTASTAQILGNNE+FEPYT NIY RRVL+GEF  VN HL+ DL+ELGL
Sbjct: 596 NGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNIYVRRVLAGEFVQVNRHLVDDLMELGL 655

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+D +KD++I   GS+Q +E IP+++++LYKTVWEI QK +LDMAA RG +IDQSQSLNI
Sbjct: 656 WNDEIKDKIIRQKGSVQGVEEIPKEVQELYKTVWEIKQKKILDMAAGRGPYIDQSQSLNI 715

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M     AK+SSMHF+GWKLGLKTG YYLRTK AA+AIQFT+D  K+      K   S  
Sbjct: 716 HMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAAADAIQFTLDAKKITMESPLKPRTSPL 775

Query: 570 EIQADQEQAMAAMIC 584
           + Q  QE     + C
Sbjct: 776 KPQYVQEDEETCIAC 790



 Score =  283 bits (723), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 169/221 (76%), Gaps = 1/221 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW VTP +  WDW +LKE+I K+G+RNSLLIAPMPTASTAQILGNNE+FEPYT NI
Sbjct: 570 LQFDMWDVTPDSGRWDWNSLKEEIKKNGMRNSLLIAPMPTASTAQILGNNEAFEPYTQNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVL+GEF  VN HL+ DL+ELGLW+D +KD++I   GS+Q +E IP+++++LYKTVW
Sbjct: 630 YVRRVLAGEFVQVNRHLVDDLMELGLWNDEIKDKIIRQKGSVQGVEEIPKEVQELYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +LDMAA RG +IDQSQSLNI+M     AK+SSMHF+GWKLGLKTG YYLRTK A
Sbjct: 690 EIKQKKILDMAAGRGPYIDQSQSLNIHMTNCTNAKLSSMHFYGWKLGLKTGQYYLRTKAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           A+AIQFT+D  K+      K   S  + Q  QE     + C
Sbjct: 750 ADAIQFTLDAKKITMESPLKPRTSPLKPQYVQEDEETCIAC 790



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 17/154 (11%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWIPD FM+RV S+  W+L C
Sbjct: 296 RKGSFAVYLEPWHADVFEFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVMSNGDWTLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN   GL D++G++F+ LY+KYE +G+      A +++        F  LE ++ TG   
Sbjct: 356 PNEAPGLQDTYGDEFEALYEKYEKDGIGRKTVKAQSLW--------FKILESQQETG--- 404

Query: 121 FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTC 154
                + Y L+  D   R+       ++ C N C
Sbjct: 405 -----IPYMLY-KDSANRKSNQKNLGTIRCSNLC 432



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 66/84 (78%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ MR P++  E+  LN +IFETIY+ A EAS E+A +DGPY+T+EGSP S
Sbjct: 507 IGVQGLADAFLLMRFPYESPEALKLNNEIFETIYHAACEASMELAKKDGPYETFEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +GILQ+DMW VTP +  WDW +LK
Sbjct: 567 EGILQFDMWDVTPDSGRWDWNSLK 590



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q + +    GVT T+L D  A +  A +  +   F+ L ++I             ++ 
Sbjct: 41  ITQKVAEGIYPGVTTTEL-DSLAAETCAYMSQVHPDFSTLAARIAVSN--------LHKN 91

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           ++++  + + ELY + +   G   P++S++ Y I+M NA++L+ AI Y+RDF+Y++FGFK
Sbjct: 92  THEKFSDTVTELYQITDGR-GRHAPLVSEEVYNIVMANAEKLDKAIDYERDFDYDYFGFK 150



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 30/40 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V    LWF IL+SQ ETG PYMLYKD+ NRKSNQ+NL  I
Sbjct: 387 VKAQSLWFKILESQQETGIPYMLYKDSANRKSNQKNLGTI 426


>gi|406663813|ref|ZP_11071832.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cecembia
           lonarensis LW9]
 gi|405551927|gb|EKB47524.1| Ribonucleoside-diphosphate reductase 1 subunit alpha [Cecembia
           lonarensis LW9]
          Length = 797

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/506 (62%), Positives = 396/506 (78%), Gaps = 10/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D  GE+F+ LY+KYE EGK    + A++LWF IL+SQIETGTPYMLYKD+ N
Sbjct: 353 PNEAPGLADCHGEEFEKLYEKYEREGKARETIKAQELWFEILESQIETGTPYMLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLASIAL  ++       K ++  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASIALPKFVATGKDGKKYFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+ T+NLNK+IDVN+YPVEEAR SN RHRPIG+GVQGLAD FI +R+PFD +E++ LN
Sbjct: 473 VTKVATRNLNKVIDVNYYPVEEARRSNFRHRPIGLGVQGLADAFIMLRMPFDSDEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIYY ++E S E+A   G Y+TYEGSP S+GI Q+DMWGVTP +  W W  LKEK
Sbjct: 533 EDIFETIYYASMETSMELAKVQGTYETYEGSPASKGIFQFDMWGVTPKSGRWAWNELKEK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL+RDL+ 
Sbjct: 593 VKKFGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMRDLIN 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D  K++LI  NGS+Q+I GIPQ +KD+YKTVWEI Q+ ++DMA +RGA+I QSQS
Sbjct: 653 LGLWNDTTKNRLIAANGSVQNIPGIPQNIKDIYKTVWEISQRIIIDMATERGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N++M + N+ K++SMHF+ WK GLKTGMYYLR++ AA+AIQFT+DK+      A +  +
Sbjct: 713 MNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIQFTVDKS------ALETDK 766

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
           +   +   + Q   A+ C  D+ E C
Sbjct: 767 TASAVDPSRNQKQDAIACSLDDPEGC 792



 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/229 (59%), Positives = 179/229 (78%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  W W  LKEK+ K G+RNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 FQFDMWGVTPKSGRWAWNELKEKVKKFGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL+RDL+ LGLW+D  K++LI  NGS+Q+I GIPQ +KD+YKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMRDLINLGLWNDTTKNRLIAANGSVQNIPGIPQNIKDIYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ ++DMA +RGA+I QSQS+N++M + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 EISQRIIIDMATERGAYICQSQSMNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A+AIQFT+DK+    A+ +  T S  +   +Q+Q   A+ C  D+ E C
Sbjct: 750 ASAIQFTVDKS----ALETDKTASAVDPSRNQKQ--DAIACSLDDPEGC 792



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+ DFLELK+N GKEE RARDLFY +WIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNDEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D  GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLADCHGEEFEKLYEKYEREG 378



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PFD +E++ LN+ IFETIYY ++E S E+A   G Y+TYEGSP S
Sbjct: 507 LGVQGLADAFIMLRMPFDSDEAKGLNEDIFETIYYASMETSMELAKVQGTYETYEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GI Q+DMWGVTP +  W W  LK     +GL+
Sbjct: 567 KGIFQFDMWGVTPKSGRWAWNELKEKVKKFGLR 599



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQIETGTPYMLYKD+ N+KSNQQNL  I+
Sbjct: 388 ELWFEILESQIETGTPYMLYKDSANKKSNQQNLGTIK 424



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT T+L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTTELDNLAA-EVCASLTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N++TG    +I+   Y ++ K+A +L+  I Y RDF+Y++FGFK
Sbjct: 101 LYTHINQKTGDNAALIAPDVYGVVKKHAAKLDEVIDYQRDFDYDYFGFK 149


>gi|367005841|ref|XP_003687652.1| hypothetical protein TPHA_0K00840 [Tetrapisispora phaffii CBS 4417]
 gi|357525957|emb|CCE65218.1| hypothetical protein TPHA_0K00840 [Tetrapisispora phaffii CBS 4417]
          Length = 877

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/479 (64%), Positives = 390/479 (81%), Gaps = 5/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAIAIYLEPWHDDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD  G +F+ LY KY AEG+  R + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PSDAPGLSDVCGAEFEALYNKYVAEGRGRRTIKAQKLWYSILEAQTETGTPFIVYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSNQ+NLGTIK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++    + YNF KL 
Sbjct: 413 EKSNQKNLGTIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTQIYNFEKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T+NLN++ID N+YPVEEARNSN RHRPI +GVQGLAD F  +R+PF+  +++ L
Sbjct: 473 EIAKVMTRNLNRVIDRNYYPVEEARNSNFRHRPIALGVQGLADTFQLLRIPFESQKAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+G+LEASCE+A ++GPYQTYEGSPVSQGILQYDMWGV PTDLWDW +LK +
Sbjct: 533 NIHIFETLYHGSLEASCELAQKEGPYQTYEGSPVSQGILQYDMWGVNPTDLWDWTSLKAQ 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HGVRNSLL+APMPTAST+QILG NE FEP+TSN+Y RR LSGEFQ+VN +LLRDLV+
Sbjct: 593 IKEHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRTLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D+MK  LI  NGSI D+  +PQ+LKD+YKTVWEI QKT+++ AADR AFIDQS S
Sbjct: 653 LGLWNDSMKQHLITANGSIADLPNVPQELKDIYKTVWEISQKTIIEFAADRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LNI++    + K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID  K+A   A+  A
Sbjct: 713 LNIHIRAPTFGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTID-AKVAEQAANAKA 770



 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 165/201 (82%), Gaps = 3/201 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV PTDLWDW +LK +I +HGVRNSLL+APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQYDMWGVNPTDLWDWTSLKAQIKEHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR LSGEFQ+VN +LLRDLV+LGLW+D+MK  LI  NGSI D+  +PQ+LKD+YKTVWE
Sbjct: 631 QRRTLSGEFQIVNPYLLRDLVDLGLWNDSMKQHLITANGSIADLPNVPQELKDIYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++ AADR AFIDQS SLNI++    + K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKTIIEFAADRSAFIDQSHSLNIHIRAPTFGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKT---KMANAMAS 966
            AIQFTID     + ANA A+
Sbjct: 751 AAIQFTIDAKVAEQAANAKAN 771



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/93 (63%), Positives = 76/93 (81%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F  +R+PF+  +++ LN  IFET+Y+G+LEASCE+A ++GPYQTYEGSPV
Sbjct: 507 ALGVQGLADTFQLLRIPFESQKAKELNIHIFETLYHGSLEASCELAQKEGPYQTYEGSPV 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMWGV PTDLWDW +LK     +G++
Sbjct: 567 SQGILQYDMWGVNPTDLWDWTSLKAQIKEHGVR 599



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAIAIYLEPWHDDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD  G +F+ LY KY AEG
Sbjct: 353 PSDAPGLSDVCGAEFEALYNKYVAEG 378



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A+L +++             +++
Sbjct: 39  VTQRIISGVYEGVTTEELDNLAA-ETAAYMTTIHPDYAVLAARLAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+++ Y+ +N +TG    ++S   ++ +M + D +NSAI YDRDF +N+FGFK
Sbjct: 90  TTKLFSDVVDQFYHYINPDTGKPASLVSKDLFDNVMAHKDEINSAIFYDRDFQFNYFGFK 149



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACN KSNQ+NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFIVYKDACNEKSNQKNLGTIK 424


>gi|325558027|gb|ADZ29408.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 388/466 (83%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE+R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEYRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D+ ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDERFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE+R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEYRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY +YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERE 377



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 76/104 (73%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|298711866|emb|CBJ32887.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 797

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/473 (65%), Positives = 387/473 (81%), Gaps = 4/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM+RVE+D  WSL C
Sbjct: 293 RKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D +G++F+ LYK YEA+G   R + AR+LW AI+D+Q+ETGTPYML+KDACN
Sbjct: 353 PNEAPGLPDVFGDEFEALYKSYEAKGLARRSIKARQLWVAIMDAQVETGTPYMLFKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD---KTYNFTKLKD 267
            KSNQ+NLGTIK SNLCTEI+EYT  DEVAVCNLASI+L  +++  +     ++F +L +
Sbjct: 413 SKSNQKNLGTIKSSNLCTEIIEYTDPDEVAVCNLASISLPAFVSAGEDGQPAFDFHRLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+VT+NLN++IDVNFYPVEEA+ SN RHRP+G+GVQGLAD FI MR PF+  ++  LN
Sbjct: 473 VTKVVTRNLNRVIDVNFYPVEEAKRSNFRHRPVGLGVQGLADAFIMMRFPFESEKAAKLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
           + IFETIY+GA+EAS E+A + G Y+TYEGSP SQG+LQYDMWGVTP+D WDWA LK K+
Sbjct: 533 RDIFETIYFGAVEASVELAEKQGTYETYEGSPASQGLLQYDMWGVTPSDRWDWAGLKAKM 592

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           A+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF VVN HLLRDL   
Sbjct: 593 AQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMYNRRVLAGEFAVVNKHLLRDLTTR 652

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW  ++++Q+I + GS+Q ++ IPQ LKDLYKTVWEI QK V+DM+ADRGAFI QSQS+
Sbjct: 653 GLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWEIKQKVVIDMSADRGAFICQSQSM 711

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM 560
           N++MA+    K++SMHF+ WK GLKTGMYYLRTKP A+AIQFT+D+  +A A+
Sbjct: 712 NVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTKPKAHAIQFTVDQESLAAAV 764



 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/196 (67%), Positives = 166/196 (84%), Gaps = 1/196 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+D WDWA LK K+A+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y
Sbjct: 570 LQYDMWGVTPSDRWDWAGLKAKMAQHGLRNSLLLAPMPTASTAQILGNNESVEPFTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN HLLRDL   GLW  ++++Q+I + GS+Q ++ IPQ LKDLYKTVWE
Sbjct: 630 NRRVLAGEFAVVNKHLLRDLTTRGLWTPSVRNQIIADQGSVQRVD-IPQDLKDLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+DM+ADRGAFI QSQS+N++MA+    K++SMHF+ WK GLKTGMYYLRTKP A
Sbjct: 689 IKQKVVIDMSADRGAFICQSQSMNVHMADPTQGKLTSMHFYSWKKGLKTGMYYLRTKPKA 748

Query: 949 NAIQFTIDKTKMANAM 964
           +AIQFT+D+  +A A+
Sbjct: 749 HAIQFTVDQESLAAAV 764



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR PF+  ++  LN+ IFETIY+GA+EAS E+A + G Y+TYEGSP S
Sbjct: 507 LGVQGLADAFIMMRFPFESEKAAKLNRDIFETIYFGAVEASVELAEKQGTYETYEGSPAS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQYDMWGVTP+D WDWA LK     +GL+
Sbjct: 567 QGLLQYDMWGVTPSDRWDWAGLKAKMAQHGLR 598



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y EPWH DIF FL+L+KN G E  RARDLFY LWIPD FM+RVE+D  WSL C
Sbjct: 293 RKGSFAMYREPWHADIFAFLDLRKNHGNELERARDLFYALWIPDLFMKRVEADGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN   GL D +G++F+ LYK YEA+GL
Sbjct: 353 PNEAPGLPDVFGDEFEALYKSYEAKGL 379



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AI+D+Q+ETGTPYML+KDACN KSNQ+NL  I+
Sbjct: 388 QLWVAIMDAQVETGTPYMLFKDACNSKSNQKNLGTIK 424



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + IE L+  V  +TG R+ +ISD+ + I+M+N + L+SAI  +RDF Y++FGFK
Sbjct: 96  KTIEMLHTYVLPQTGERSSLISDEVFRIVMENKEVLDSAIQDERDFEYDYFGFK 149


>gi|343173121|gb|AEL99263.1| ribonucleoside-diphosphate reductase subunit M1, partial [Silene
           latifolia]
          Length = 542

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/482 (65%), Positives = 381/482 (79%), Gaps = 18/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIFDFL+L+KN GKEE RARDLFY LW+PD FM RV++D QWSL C
Sbjct: 58  RKGAFAVYLEPWHADIFDFLDLRKNHGKEEQRARDLFYALWVPDLFMERVQTDGQWSLFC 117

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE  GK  + V A+ LWF IL +Q+ETGTPYML+KD+CN
Sbjct: 118 PNEAPGLADCWGKEFETLYTKYERLGKAKKVVQAQSLWFEILKAQMETGTPYMLFKDSCN 177

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI++YTS  E AVCNLASIAL  Y+                 
Sbjct: 178 RKSNQQNLGTIKSSNLCTEIIQYTSPTETAVCNLASIALPRYVKEKGVPSESQNTKLAGS 237

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL +V ++VT NLNKIIDVNFYPVE AR SNMRHRPIGIG+QGLAD FI
Sbjct: 238 LDSGNRYFDFDKLAEVVEVVTTNLNKIIDVNFYPVETARRSNMRHRPIGIGIQGLADTFI 297

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL+ SC++AA++GPY+TYEGSPVS+GILQ DMWGV
Sbjct: 298 LLGMPFDSPEAQQLNKDIFETIYYHALKTSCKLAAKEGPYETYEGSPVSKGILQPDMWGV 357

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           T +D WDW AL+  IA+ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 358 TLSDRWDWGALRGMIAEKGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 417

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+Q+I  NGS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 418 FVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVQKIIEIPAHLKAIYKTVWEIKQKTLVD 477

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG FIDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 478 MAVDRGCFIDQSQSLNIHMDQANTGKLTSLHFHAWSKGLKTGMYYLRTRAAADAIKFTVD 537

Query: 553 KT 554
            +
Sbjct: 538 TS 539



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/187 (68%), Positives = 153/187 (81%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVT +D WDW AL+  IA+ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 353 DMWGVTLSDRWDWGALRGMIAEKGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 412

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+Q+I  NGS+Q I  IP  LK +YKTVWEI Q
Sbjct: 413 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVQKIIEIPAHLKAIYKTVWEIKQ 472

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG FIDQSQSLNI+M + N  K++S+HFH W  GLKTGMYYLRT+ AA+AI
Sbjct: 473 KTLVDMAVDRGCFIDQSQSLNIHMDQANTGKLTSLHFHAWSKGLKTGMYYLRTRAAADAI 532

Query: 952 QFTIDKT 958
           +FT+D +
Sbjct: 533 KFTVDTS 539



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIFDFL+L+KN GKEE RARDLFY LW+PD FM RV++D QWSL C
Sbjct: 58  RKGAFAVYLEPWHADIFDFLDLRKNHGKEEQRARDLFYALWVPDLFMERVQTDGQWSLFC 117

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE  G
Sbjct: 118 PNEAPGLADCWGKEFETLYTKYERLG 143



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/167 (44%), Positives = 106/167 (63%), Gaps = 15/167 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD FI + +PFD  E++ LNK IFETIYY AL+ SC++AA++GPY+TYEGSPVS
Sbjct: 287 IGIQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKTSCKLAAKEGPYETYEGSPVS 346

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVT +D WDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 347 KGILQPDMWGVTLSDRWDWGALRGMIAEKGIR--NSLLVAPMPTASTSQILGNNECFEPY 404

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNA 749
            SN  +  V+   + +VNK       E G  +P + +   +II +N 
Sbjct: 405 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKN---QIIYENG 448



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +Q+ETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 144 KAKKVVQAQSLWFEILKAQMETGTPYMLFKDSCNRKSNQQNLGTIK 189


>gi|367005242|ref|XP_003687353.1| hypothetical protein TPHA_0J00970 [Tetrapisispora phaffii CBS 4417]
 gi|357525657|emb|CCE64919.1| hypothetical protein TPHA_0J00970 [Tetrapisispora phaffii CBS 4417]
          Length = 875

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/479 (64%), Positives = 391/479 (81%), Gaps = 5/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AIYLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAIAIYLEPWHDDIFDFVDIRKNHGKEEMRARDLFPALWVPDLFMKRVEENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G +F+ LY KY AEG+  R + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PSEAPGLSDVYGAEFEALYNKYVAEGRGRRTIKAQKLWYSILEAQTETGTPFIVYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLGTIK SNLC EIVEY++ DE AVCNLASIAL  +I+ ++    +TYNF KL 
Sbjct: 413 RKSNQKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIDVSEDGNTQTYNFQKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           DVAK++T+NLN++ID N+YPVEEA+NSN RHRPI +G+QGLAD F  +RLPF+  +++ L
Sbjct: 473 DVAKVLTRNLNRVIDRNYYPVEEAKNSNFRHRPIALGIQGLADTFQLLRLPFESQKAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+ ALE+SCE+A +DGPY +Y+GSPVS+G+LQYDMWGV PTDLWDWA LK  
Sbjct: 533 NIHIFETLYHAALESSCELAQKDGPYPSYQGSPVSKGVLQYDMWGVDPTDLWDWAPLKAN 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSLL+APMPTAST+QILG NE FEP+TSN+Y RR LSGEFQ+VN +LLRDLV+
Sbjct: 593 IKKHGIRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRTLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+D+MK  LI  NGSI D+  +PQ+LK++YKTVWEI QKT+++ AADR AFIDQS S
Sbjct: 653 LGLWNDSMKQHLITANGSIADLPNVPQELKEIYKTVWEISQKTIIEFAADRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LNI++    + K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID  K+A   A+  A
Sbjct: 713 LNIHIRAPTFGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTID-AKVAEQAANAKA 770



 Score =  292 bits (748), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 135/201 (67%), Positives = 164/201 (81%), Gaps = 3/201 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV PTDLWDWA LK  I KHG+RNSLL+APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQYDMWGVDPTDLWDWAPLKANIKKHGIRNSLLLAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR LSGEFQ+VN +LLRDLV+LGLW+D+MK  LI  NGSI D+  +PQ+LK++YKTVWE
Sbjct: 631 QRRTLSGEFQIVNPYLLRDLVDLGLWNDSMKQHLITANGSIADLPNVPQELKEIYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++ AADR AFIDQS SLNI++    + K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKTIIEFAADRSAFIDQSHSLNIHIRAPTFGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKT---KMANAMAS 966
            AIQFTID     + ANA A+
Sbjct: 751 AAIQFTIDAKVAEQAANAKAN 771



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 74/93 (79%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +G+QGLAD F  +RLPF+  +++ LN  IFET+Y+ ALE+SCE+A +DGPY +Y+GSPV
Sbjct: 507 ALGIQGLADTFQLLRLPFESQKAKELNIHIFETLYHAALESSCELAQKDGPYPSYQGSPV 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+G+LQYDMWGV PTDLWDWA LK     +G++
Sbjct: 567 SKGVLQYDMWGVDPTDLWDWAPLKANIKKHGIR 599



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AIYLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAIAIYLEPWHDDIFDFVDIRKNHGKEEMRARDLFPALWVPDLFMKRVEENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G +F+ LY KY AEG
Sbjct: 353 PSEAPGLSDVYGAEFEALYNKYVAEG 378



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +AIL +++             +++
Sbjct: 39  VTQRIISGVYEGVTTEELDNLAA-ETAAYMTTVHPDYAILAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +VI++LY  +N E      +ISD  YE++MK+ D LNSAI++DRDF +N+FGFK
Sbjct: 90  TTKCFSDVIQQLYEYINPENNKPAKLISDDVYEVVMKHKDELNSAIVFDRDFQFNYFGFK 149



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFIVYKDACNRKSNQKNLGTIK 424


>gi|296421726|ref|XP_002840415.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636631|emb|CAZ84606.1| unnamed protein product [Tuber melanosporum]
          Length = 884

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/481 (65%), Positives = 388/481 (80%), Gaps = 11/481 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIFDF++L+KN GKEE RARDLFY LWIPD FM+RVE++A+WSL C
Sbjct: 293 RPGAFAIYMEPWHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GL+D WGE+F+ LY KYE      R+ + A+KLW+ IL++Q ETG P+MLYKDAC
Sbjct: 353 PNEAPGLADVWGEEFEALYNKYENTKDLARKTIKAQKLWYHILEAQTETGNPFMLYKDAC 412

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           NRKSNQQNLGTI+ SNLCTEIVEY++ DEVAVCNLAS+AL  Y++     Y+F KL +V 
Sbjct: 413 NRKSNQQNLGTIRSSNLCTEIVEYSAPDEVAVCNLASLALPTYVDVQRGEYDFAKLHEVT 472

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           K+V KNLNKIIDVNFYPV EAR SN RHRP+G+GVQGLAD F+ +R+PF+  +++ LN Q
Sbjct: 473 KVVIKNLNKIIDVNFYPVPEARKSNTRHRPVGVGVQGLADAFLALRMPFESPQAKQLNIQ 532

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIY+ A+EAS E+A   GPY TYEGSP S+G LQYD+W VTPT+LWDW  LKEK+ K
Sbjct: 533 IFETIYHAAVEASTELAEIQGPYPTYEGSPASKGQLQYDLWNVTPTELWDWDELKEKVKK 592

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLV++GL
Sbjct: 593 HGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVDMGL 652

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W DNMK+++I  NGSIQ+I  IP  +K LYKTVWEI QK V+++    GAFIDQSQSLNI
Sbjct: 653 WSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWEISQKKVIEVC---GAFIDQSQSLNI 709

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK-------TKMANAMAS 562
           ++      K++SMHF+GW+LGLKTGMYYLRT+ AA AIQFT+D+       T +A A+ +
Sbjct: 710 HIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAAAAIQFTVDQEALKVADTNVARALPN 769

Query: 563 K 563
           K
Sbjct: 770 K 770



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 133/206 (64%), Positives = 165/206 (80%), Gaps = 10/206 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W VTPT+LWDW  LKEK+ KHG+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDLWNVTPTELWDWDELKEKVKKHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I  NGSIQ+I  IP  +K LYKTVWE
Sbjct: 628 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAENGSIQNIPNIPDDIKALYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+++    GAFIDQSQSLNI++      K++SMHF+GW+LGLKTGMYYLRT+ AA
Sbjct: 688 ISQKKVIEVC---GAFIDQSQSLNIHIQNPTMGKLTSMHFYGWRLGLKTGMYYLRTQAAA 744

Query: 949 NAIQFTIDK-------TKMANAMASK 967
            AIQFT+D+       T +A A+ +K
Sbjct: 745 AAIQFTVDQEALKVADTNVARALPNK 770



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIFDF++L+KN GKEE RARDLFY LWIPD FM+RVE++A+WSL C
Sbjct: 293 RPGAFAIYMEPWHADIFDFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANAEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN   GL+D WGE+F+ LY KYE
Sbjct: 353 PNEAPGLADVWGEEFEALYNKYE 375



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PF+  +++ LN QIFETIY+ A+EAS E+A   GPY TYEGSP S
Sbjct: 505 VGVQGLADAFLALRMPFESPQAKQLNIQIFETIYHAAVEASTELAEIQGPYPTYEGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYD+W VTPT+LWDW  LK     +GL+
Sbjct: 565 KGQLQYDLWNVTPTELWDWDELKEKVKKHGLR 596



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 35  DAATITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +VI +LY+ VN + G    MIS + YE +M++A  L+SAIIYD+DFNYN+
Sbjct: 86  LHKQTKKQFSQVISDLYHYVNPKNGRPASMISTETYETVMRHASELDSAIIYDKDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 3/64 (4%)

Query: 659 DMWGVTPTDLWD-WAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           D+WG     L++ +   K LA   +   KLW+ IL++Q ETG P+MLYKDACNRKSNQQN
Sbjct: 361 DVWGEEFEALYNKYENTKDLARKTIKAQKLWYHILEAQTETGNPFMLYKDACNRKSNQQN 420

Query: 716 LEVI 719
           L  I
Sbjct: 421 LGTI 424


>gi|389585613|dbj|GAB68343.1| ribonucleoside-diphosphate reductase large chain [Plasmodium
           cynomolgi strain B]
          Length = 837

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/517 (61%), Positives = 398/517 (76%), Gaps = 10/517 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 321 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 380

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+SWGE+F+ LY KYE E    + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 381 PNECPGLSESWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 440

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   + +NF KL ++ K
Sbjct: 441 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDVEKREFNFKKLYEITK 500

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL++II+ N+YPV+EA  SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 501 IITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQGLADTFMLLRYPYESDSAKELNKRI 560

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A   GPY+TY+GSP SQGILQ+DMW V      W+W  LK KI K
Sbjct: 561 FETMYYAALEMSMELAQIYGPYETYQGSPASQGILQFDMWNVKVDNKYWNWDELKAKIKK 620

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 621 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 680

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGS+Q I  IP  LK+LYKTVWEI QK ++DMAADRGAFIDQSQSLNI
Sbjct: 681 WDEDMKQQLIAHNGSVQYISEIPSDLKELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNI 740

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS-- 567
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA   K+A    
Sbjct: 741 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAAKMKNAEGVA 800

Query: 568 -----QEEIQADQEQAMAAMIC--RRDNKEDCIGVQG 597
                  E  + +      ++C  RR+N + C+   G
Sbjct: 801 ITREVSRETISTESTVTQNVVCPLRRNNDDQCLMCSG 837



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 144/239 (60%), Positives = 175/239 (73%), Gaps = 10/239 (4%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V      W+W  LK KI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 595 LQFDMWNVKVDNKYWNWDELKAKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 654

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGS+Q I  IP  LK+LYKTVW
Sbjct: 655 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPSDLKELYKTVW 714

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGAFIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 715 EIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 774

Query: 948 ANAIQFTIDK------TKMANAMASKDTRS-QEEIQADQEQAMAAMIC--RRDNKEDCL 997
            +AI+FT+D        KM NA     TR    E  + +      ++C  RR+N + CL
Sbjct: 775 TDAIKFTVDTQVAKNAAKMKNAEGVAITREVSRETISTESTVTQNVVCPLRRNNDDQCL 833



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 321 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 380

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS+SWGE+F+ LY KYE E +
Sbjct: 381 PNECPGLSESWGEEFEKLYTKYEEENM 407



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ + ++ LNK+IFET+YY ALE S E+A   GPY+TY+GSP S
Sbjct: 532 IGVQGLADTFMLLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPAS 591

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW V      W+W  LK     +GL+
Sbjct: 592 QGILQFDMWNVKVDNKYWNWDELKAKIKKHGLR 624



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKD+CN KSNQ+NL  I+
Sbjct: 412 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 452



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 58  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 112

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    EV E LY M     G    +IS + YE ++++ DRLN  I Y R
Sbjct: 113 ----DNLHKNTSDDIGEVAEALY-MYKDVRGRPASLISKEVYEFMIQHKDRLNKEIDYTR 167

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 168 DFNYDYFGFK 177


>gi|325559314|gb|ADZ30689.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 387/466 (83%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W V P+DLWDW +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVPSDLWDWESLKDKIRSY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLWDW +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWDWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY +YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERE 377



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 77/104 (74%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W V P+DLWDW +LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNVVPSDLWDWESLKDKIRSYGLR 593



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|367017520|ref|XP_003683258.1| hypothetical protein TDEL_0H01880 [Torulaspora delbrueckii]
 gi|359750922|emb|CCE94047.1| hypothetical protein TDEL_0H01880 [Torulaspora delbrueckii]
          Length = 886

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/468 (66%), Positives = 391/468 (83%), Gaps = 4/468 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ + +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVQENGEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F+ LY++Y AEG+  + + A+KLW+AIL+SQ ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLSDVYGDEFEALYERYVAEGRGRKTIKAQKLWYAILESQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD--KT--YNFTKLK 266
            KSNQ+NLGTIK SNLC EIVEY++ DE AVCNLASIAL   I  AD  KT  Y+F KL 
Sbjct: 413 IKSNQKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPSCIQVADDGKTQWYDFAKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +AK++T+NLNK+ID N+YPV EARNSNMR+RP+ +GV GLAD+F+ +R+PF+  E++ L
Sbjct: 473 KIAKVITRNLNKVIDRNYYPVPEARNSNMRNRPMALGVNGLADVFMMLRVPFESQEAKDL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ +LEASCE+A +DGPY TYEGSP+SQGILQYD+W   P+DLWDW  LK+ 
Sbjct: 533 NIQIFETIYHASLEASCELAKKDGPYSTYEGSPISQGILQYDLWNTKPSDLWDWDTLKKS 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I ++GVRNSLL+APMPTAST+QILG NE FEPYTSN+YSRRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IKEYGVRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  +I +NGSIQ++  IPQ+LKDLYKTVWEI QKT+++MAADR  +IDQSQS
Sbjct: 653 LGIWDDSMKQHIITDNGSIQNLPNIPQELKDLYKTVWEISQKTIIEMAADRAVYIDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           LNI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK+
Sbjct: 713 LNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKS 760



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 162/190 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   P+DLWDW  LK+ I ++GVRNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 571 LQYDLWNTKPSDLWDWDTLKKSIKEYGVRNSLLLAPMPTASTSQILGYNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LLRDLV+LG+WDD+MK  +I +NGSIQ++  IPQ+LKDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLRDLVDLGIWDDSMKQHIITDNGSIQNLPNIPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQSQSLNI++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKTIIEMAADRAVYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKT 958
            AIQFTIDK+
Sbjct: 751 AAIQFTIDKS 760



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/97 (58%), Positives = 75/97 (77%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GV GLAD+F+ +R+PF+  E++ LN QIFETIY+ +LEASCE+A +DGPY TYE
Sbjct: 503 NRPMALGVNGLADVFMMLRVPFESQEAKDLNIQIFETIYHASLEASCELAKKDGPYSTYE 562

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP+SQGILQYD+W   P+DLWDW  LK     YG++
Sbjct: 563 GSPISQGILQYDLWNTKPSDLWDWDTLKKSIKEYGVR 599



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ + +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVQENGEWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G++F+ LY++Y AEG
Sbjct: 353 PSEAPGLSDVYGDEFEALYERYVAEG 378



 Score = 76.6 bits (187), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+ EL+N VN + G  +PMIS +  +I+ K+ D LNSAI+YDRDFN+N+FGFK
Sbjct: 90  TTKQFSQVVSELFNYVNPKNGVHSPMISQEVMDIVNKHKDELNSAIVYDRDFNFNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL+SQ ETGTP+MLYKDACN KSNQ+NL  I+
Sbjct: 388 KLWYAILESQTETGTPFMLYKDACNIKSNQKNLGTIK 424


>gi|393186080|gb|AFN02837.1| putative ribonucleotide-diphosphate reductase large chain
           [Phakopsora pachyrhizi]
          Length = 865

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/463 (67%), Positives = 386/463 (83%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L+C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDMFMRRVEQNGDWPLLC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GLSD +GE+FD+L+ +YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 354 PAEAPGLSDVYGEEFDELFLRYEREGRAKKVIKAQKLWYAILEAQTETGNPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  YIN  D  Y+F KL +V K
Sbjct: 414 KKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIN--DGVYDFKKLHEVVK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLNKIID+N+YPV EAR SNMRHRPIGIGVQGLAD F  ++LPFD ++++ LN QI
Sbjct: 472 EVTYNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFQILKLPFDSDKAKKLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A ++G Y+T+ GSP S G  QYD+WGVTPTDLW+W  LKEK+ K 
Sbjct: 532 FETLYHAALEASHELALKEGHYETFPGSPASNGEFQYDLWGVTPTDLWEWGTLKEKVKKD 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+VN  LL++LVE+GLW
Sbjct: 592 GIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ+I  IP ++K +YKTVWEI QK+++DM+ADRGAFIDQSQSLNI+
Sbjct: 652 NDEMKNRIIAHQGSIQNIPNIPSQMKAVYKTVWEISQKSIIDMSADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +    + +++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+DK
Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDK 754



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 165/189 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+YD+WGVTPTDLW+W  LKEK+ K G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 FQYDLWGVTPTDLWEWGTLKEKVKKDGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+VN  LL++LVE+GLW+D MK+++I + GSIQ+I  IP ++K +YKTVWE
Sbjct: 626 TRRVLAGEFQIVNPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPNIPSQMKAVYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK+++DM+ADRGAFIDQSQSLNI++    + +++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 686 ISQKSIIDMSADRGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAA 745

Query: 949 NAIQFTIDK 957
           NAIQFT+DK
Sbjct: 746 NAIQFTVDK 754



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L+C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDMFMRRVEQNGDWPLLC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GLSD +GE+FD+L+ +YE EG
Sbjct: 354 PAEAPGLSDVYGEEFDELFLRYEREG 379



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 66/83 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  ++LPFD ++++ LN QIFET+Y+ ALEAS E+A ++G Y+T+ GSP S
Sbjct: 503 IGVQGLADAFQILKLPFDSDKAKKLNIQIFETLYHAALEASHELALKEGHYETFPGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
            G  QYD+WGVTPTDLW+W  LK
Sbjct: 563 NGEFQYDLWGVTPTDLWEWGTLK 585



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VIE+LYN VN   G  + MIS   YE +  NA+ LNSA+IYDRDFNYN+FGFK
Sbjct: 97  QVIEDLYNYVNPINGRPSSMISQTTYEAVKANAEALNSAVIYDRDFNYNYFGFK 150



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   KLW+AIL++Q ETG P+MLYKDA N+KSNQ+NL  I+
Sbjct: 384 VIKAQKLWYAILEAQTETGNPFMLYKDAANKKSNQKNLGTIK 425


>gi|302844064|ref|XP_002953573.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
 gi|300261332|gb|EFJ45546.1| hypothetical protein VOLCADRAFT_82353 [Volvox carteri f.
           nagariensis]
          Length = 824

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/526 (60%), Positives = 405/526 (76%), Gaps = 24/526 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFYGLWIPD FM RVE+D +WSL C
Sbjct: 296 RKGAFAIYIEPWHADVFEFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEWSLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  + L++ WG  F+ LY +YE EG+  + V A++LWFAIL++Q+ETG PYMLYKD+CN
Sbjct: 356 PNEAQDLAECWGADFERLYTQYEREGRARKVVRAQQLWFAILEAQVETGNPYMLYKDSCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           +KSNQQNLGTIKCSNLCTEI+EYTS DE+AVCNLASIAL  ++                 
Sbjct: 416 KKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPGWESKKLVGS 475

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +  ++ ++F KL ++ ++ T+NLNKIIDVN+YP  +A+ SNMRHRPIG+GVQGLAD FI
Sbjct: 476 LDAPNRFFDFEKLAEMTQMATRNLNKIIDVNYYPHPKAQKSNMRHRPIGLGVQGLADTFI 535

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E+  LN+QIFE IYY AL ASCE+A RDG Y+TYEGSPVSQGILQ DMWGV
Sbjct: 536 ILGMPFDSPEAAELNRQIFEVIYYAALSASCELAERDGTYETYEGSPVSQGILQPDMWGV 595

Query: 373 TPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL 429
            PT +    DW AL+++IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL
Sbjct: 596 KPTGVGSRCDWPALRDRIARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVL 655

Query: 430 SGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKT 489
           SGEF VVN HLL DL  +GLW   +K++L+  NGS+ D++ IP +LK LYKTVWEI Q+T
Sbjct: 656 SGEFTVVNQHLLHDLNRMGLWSPELKNELVAANGSVADLD-IPVELKALYKTVWEIKQRT 714

Query: 490 VLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549
           ++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA+AI+F
Sbjct: 715 LVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKF 774

Query: 550 TIDKTKMANAMASK--DARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           T+D+  ++   AS      S    +      +AAM+C  +NKE C+
Sbjct: 775 TVDQQALSRKKASNPPPTLSLPTGKFSVGAQLAAMVCSLENKEACL 820



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/231 (59%), Positives = 177/231 (76%), Gaps = 6/231 (2%)

Query: 772 DMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWGV PT +    DW AL+++IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 591 DMWGVKPTGVGSRCDWPALRDRIARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 650

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF VVN HLL DL  +GLW   +K++L+  NGS+ D++ IP +LK LYKTVWE
Sbjct: 651 VRRVLSGEFTVVNQHLLHDLNRMGLWSPELKNELVAANGSVADLD-IPVELKALYKTVWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA
Sbjct: 710 IKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAA 769

Query: 949 NAIQFTIDKTKMANAMASK--DTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D+  ++   AS    T S    +      +AAM+C  +NKE CL
Sbjct: 770 DAIKFTVDQQALSRKKASNPPPTLSLPTGKFSVGAQLAAMVCSLENKEACL 820



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIY+EPWH D+F+FL+L+KN GKEE RARDLFYGLWIPD FM RVE+D +WSL C
Sbjct: 296 RKGAFAIYIEPWHADVFEFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEWSLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  + L++ WG  F+ LY +YE EG
Sbjct: 356 PNEAQDLAECWGADFERLYTQYEREG 381



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 58/95 (61%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + +PFD  E+  LN+QIFE IYY AL ASCE+A RDG Y+TYEGSPVS
Sbjct: 525 LGVQGLADTFIILGMPFDSPEAAELNRQIFEVIYYAALSASCELAERDGTYETYEGSPVS 584

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QGILQ DMWGV PT +    DW AL+     +G++
Sbjct: 585 QGILQPDMWGVKPTGVGSRCDWPALRDRIARHGVR 619



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LWFAIL++Q+ETG PYMLYKD+CN+KSNQQNL  I+
Sbjct: 386 VVRAQQLWFAILEAQVETGNPYMLYKDSCNKKSNQQNLGTIK 427



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 43/63 (68%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++K+ +   E +E LYN  N  TG    +I  + ++II++NA RLNS I YDRDF++++F
Sbjct: 90  HKKTKKSFSETMEALYNYKNPRTGQEASLIDKEVFQIIIQNAARLNSEIRYDRDFDFDYF 149

Query: 768 GFK 770
           GFK
Sbjct: 150 GFK 152


>gi|393186086|gb|AFN02840.1| putative ribonucleoside-diphosphate reductase large chain
           [Phakopsora pachyrhizi]
          Length = 865

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/463 (67%), Positives = 386/463 (83%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L+C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDMFMRRVEQNGDWPLLC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GLSD +GE+FD+L+ +YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 354 PAEAPGLSDVYGEEFDELFLRYEREGRAKKVIKAQKLWYAILEAQTETGNPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  YIN  D  Y+F KL +V K
Sbjct: 414 KKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIN--DGVYDFKKLHEVVK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLNKIID+N+YPV EAR SNMRHRPIGIGVQGLAD F  ++LPFD ++++ LN QI
Sbjct: 472 EVTYNLNKIIDINYYPVPEARKSNMRHRPIGIGVQGLADAFQILKLPFDSDKAKKLNIQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A ++G Y+T+ GSP S G  QYD+WGVTPTDLW+W  LKEK+ K 
Sbjct: 532 FETLYHAALEASHELALKEGHYETFPGSPASNGEFQYDLWGVTPTDLWEWGTLKEKVKKD 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+VN  LL++LVE+GLW
Sbjct: 592 GIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ+I  IP ++K +YKTVWEI QK+++DM+ADRGAFIDQSQSLNI+
Sbjct: 652 NDEMKNRIIAHQGSIQNIPNIPSQMKAVYKTVWEISQKSIIDMSADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +    + +++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+DK
Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDK 754



 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 130/189 (68%), Positives = 165/189 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+YD+WGVTPTDLW+W  LKEK+ K G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 FQYDLWGVTPTDLWEWGTLKEKVKKDGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+VN  LL++LVE+GLW+D MK+++I + GSIQ+I  IP ++K +YKTVWE
Sbjct: 626 TRRVLAGEFQIVNPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPNIPSQMKAVYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK+++DM+ADRGAFIDQSQSLNI++    + +++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 686 ISQKSIIDMSADRGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAA 745

Query: 949 NAIQFTIDK 957
           NAIQFT+DK
Sbjct: 746 NAIQFTVDK 754



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FMRRVE +  W L+C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDMFMRRVEQNGDWPLLC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GLSD +GE+FD+L+ +YE EG
Sbjct: 354 PAEAPGLSDVYGEEFDELFLRYEREG 379



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 66/83 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  ++LPFD ++++ LN QIFET+Y+ ALEAS E+A ++G Y+T+ GSP S
Sbjct: 503 IGVQGLADAFQILKLPFDSDKAKKLNIQIFETLYHAALEASHELALKEGHYETFPGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
            G  QYD+WGVTPTDLW+W  LK
Sbjct: 563 NGEFQYDLWGVTPTDLWEWGTLK 585



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VIE+LYN VN   G  + MIS   YE +  NA+ LNSA+IYDRDFNYN+FGFK
Sbjct: 97  QVIEDLYNYVNPINGRPSSMISQTTYEAVKANAEALNSAVIYDRDFNYNYFGFK 150



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   KLW+AIL++Q ETG P+MLYKDA N+KSNQ+NL  I+
Sbjct: 384 VIKAQKLWYAILEAQTETGNPFMLYKDAANKKSNQKNLGTIK 425


>gi|325559101|gb|ADZ30477.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/470 (65%), Positives = 389/470 (82%), Gaps = 3/470 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERERRYKSIINARVIWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFFKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W + P+DLW+W +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM 560
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+  +M
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKIKPSM 759



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/196 (65%), Positives = 168/196 (85%), Gaps = 1/196 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W + P+DLW+W +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNIVPSDLWNWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKMANAM 964
             IQFT+DK K+  +M
Sbjct: 744 APIQFTLDKDKIKPSM 759



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY +YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERE 377



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 77/104 (74%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W + P+DLW+W +LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSYGLR 593



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 389 IWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|428671726|gb|EKX72641.1| ribonucleoside-diphosphate reductase large chain, putative [Babesia
           equi]
          Length = 857

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/490 (64%), Positives = 394/490 (80%), Gaps = 7/490 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 337 RRGSFAIYLEPWHADIFKMLDLRKNHGSEDLRARDLFYALWIPDLFMKRVEANENWTLMC 396

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL + WG++F+ LY KYE  G   + +PA+KLWFAIL SQIETGTPYMLYKDACN
Sbjct: 397 PDECRGLYEVWGDEFEALYTKYEQAGMGRKTIPAQKLWFAILQSQIETGTPYMLYKDACN 456

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EIV+YT   EVAVCNLASIAL M++N  +KT++F KL  +A+
Sbjct: 457 AKSNQKNLGTIKSSNLCCEIVQYTDSKEVAVCNLASIALPMFVNKEEKTFDFKKLYKIAR 516

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLN+IID N+YPV+EAR SN RHRPIG+GVQGLAD F+ +R PF+ +E+R LNK+I
Sbjct: 517 VITYNLNQIIDRNYYPVKEARYSNFRHRPIGVGVQGLADTFMLLRYPFESDEARELNKRI 576

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FETIYY  L+ S  +A + G Y++Y GSP SQG+LQ+D+WG      LWDW  LK ++ K
Sbjct: 577 FETIYYACLDESISLAEKHGHYESYPGSPASQGLLQFDLWGAKVDNKLWDWDDLKARMKK 636

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSL +APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL DLV+LGL
Sbjct: 637 HGLRNSLFLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLVDLGL 696

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ MK +LI  NGS++ IE IPQ +K+LYKTVWEI QKT++DMAADRG FIDQSQSLNI
Sbjct: 697 WNETMKQKLIAYNGSLRHIEEIPQHIKELYKTVWEIKQKTIIDMAADRGIFIDQSQSLNI 756

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           YM +  ++K++SMHF+GWK GLKTG+YYLRT+PA +AI+FTID + +A A     A+++ 
Sbjct: 757 YMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFTID-SNIAQA-----AKAKN 810

Query: 570 EIQADQEQAM 579
           ++  D + +M
Sbjct: 811 KLSTDMQPSM 820



 Score =  286 bits (732), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 168/206 (81%), Gaps = 2/206 (0%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG      LWDW  LK ++ KHG+RNSL +APMPTAST+QILGNNESFEPYTSNI
Sbjct: 611 LQFDLWGAKVDNKLWDWDDLKARMKKHGLRNSLFLAPMPTASTSQILGNNESFEPYTSNI 670

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DLV+LGLW++ MK +LI  NGS++ IE IPQ +K+LYKTVW
Sbjct: 671 YYRRVLSGEFFVVNPHLLNDLVDLGLWNETMKQKLIAYNGSLRHIEEIPQHIKELYKTVW 730

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKT++DMAADRG FIDQSQSLNIYM +  ++K++SMHF+GWK GLKTG+YYLRT+PA
Sbjct: 731 EIKQKTIIDMAADRGIFIDQSQSLNIYMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPA 790

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQE 973
            +AI+FTID + +A A  +K+  S +
Sbjct: 791 TDAIKFTID-SNIAQAAKAKNKLSTD 815



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 69/87 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 337 RRGSFAIYLEPWHADIFKMLDLRKNHGSEDLRARDLFYALWIPDLFMKRVEANENWTLMC 396

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL + WG++F+ LY KYE  G+
Sbjct: 397 PDECRGLYEVWGDEFEALYTKYEQAGM 423



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PF+ +E+R LNK+IFETIYY  L+ S  +A + G Y++Y GSP S
Sbjct: 548 VGVQGLADTFMLLRYPFESDEARELNKRIFETIYYACLDESISLAEKHGHYESYPGSPAS 607

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QG+LQ+D+WG      LWDW  LK     +GL+
Sbjct: 608 QGLLQFDLWGAKVDNKLWDWDDLKARMKKHGLR 640



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/37 (83%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL SQIETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 432 KLWFAILQSQIETGTPYMLYKDACNAKSNQKNLGTIK 468



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 705 DACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNY 764
           D  ++ ++    EV+  LY        T   MIS   Y  IM+N DRLN+ I Y RDF Y
Sbjct: 129 DNLHKNTSDDFSEVVRTLYE-YKHVYNTNASMISYDVYNFIMENKDRLNAEIDYSRDFQY 187

Query: 765 NFFGFK 770
           ++FGFK
Sbjct: 188 DYFGFK 193


>gi|90660311|gb|ABD97425.1| ribonucleotide reductase large subunit [Cowpox virus]
          Length = 771

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 386/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D+ ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDERFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY +YE E
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|40850562|gb|AAR95994.1| putative ribonucleotide reductase large subunit [Musa acuminata]
          Length = 810

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/522 (62%), Positives = 401/522 (76%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LWIPD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++F+ LY KYE EGK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PNEAPGLADCWGDEFEKLYLKYEDEGKAKKVVAAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++         +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSRLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  I+T+NLNKIIDVN+YPVE AR SN+RHRPIGIGVQGLAD FI
Sbjct: 473 SGSKNRYFDFDKLGEVTAIITENLNKIIDVNYYPVETARRSNLRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL++S EIA   GPY+TY+GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           T +D WDWAAL+E I+K+GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TLSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+  I  IP  LK +YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEIPDNLKAIYKTVWEIKQRTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
                 ++  K  +  E+   D E  MA ++C  +N+E+C+ 
Sbjct: 773 -----TSLLQKTTKPVED--DDVEAKMAQVVCSLENREECMA 807



 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 136/226 (60%), Positives = 175/226 (77%), Gaps = 7/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW VT +D WDWAAL+E I+K+GVRNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVTLSDRWDWAALREMISKNGVRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+  I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVLKIPEIPDNLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D      ++  K T+  E+   D E  MA ++C  +N+E+C+
Sbjct: 768 KFTVD-----TSLLQKTTKPVED--DDVEAKMAQVVCSLENREECM 806



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LWIPD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADMYEFLELRKNHGKEEHRARDLFYALWIPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGDEFEKLYLKYEDEG 378



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL++S EIA   GPY+TY+GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHALKSSSEIAISSGPYETYQGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW VT +D WDWAAL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVTLSDRWDWAALREMISKNGVR--NSLLIAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNK 677



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y+  N+ +G   P+I+D  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKLMYHHFNERSGQEAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 379 KAKKVVAAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 424


>gi|164659252|ref|XP_001730750.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
 gi|159104648|gb|EDP43536.1| hypothetical protein MGL_1749 [Malassezia globosa CBS 7966]
          Length = 850

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/475 (67%), Positives = 395/475 (83%), Gaps = 2/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+F++L+KN GK+E RARDLF  +W+PD FM+RVE +  WSLMC
Sbjct: 263 RPGAFAIYLEPWHPDVFEFVDLRKNHGKDEVRARDLFLAMWVPDLFMKRVEKNEDWSLMC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D +GE+F++LY++YE EG+  R V A+KLW+AIL++QIETG P+MLYKDA N
Sbjct: 323 PAEAPGLADCYGEEFEELYERYEREGRAKRSVKAQKLWYAILEAQIETGNPFMLYKDAAN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
           RKSNQ+NLGTIK SNLCTEI+EY+S +E AVCNLASIAL  +I    A K YNF +L DV
Sbjct: 383 RKSNQKNLGTIKSSNLCTEIMEYSSPEETAVCNLASIALPTFIEGTGASKIYNFQRLHDV 442

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           AK+V KNLN+IID+N+YPV  AR SNMRHRPIGIGVQGLAD F+ M  PFD  E+R LN 
Sbjct: 443 AKVVCKNLNRIIDINYYPVPSARRSNMRHRPIGIGVQGLADAFMIMGYPFDSQEARRLNL 502

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ ALE SCE+A + G Y+TY+GSP SQGILQYDMW  TPTDLWDWA+LK KIA
Sbjct: 503 QIFETIYHAALERSCELAEQYGTYETYQGSPASQGILQYDMWNRTPTDLWDWASLKAKIA 562

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSLL+APMPTAST+QILG NE FEPYT+NIY RRVL+GEFQVVN  LLR+LVELG
Sbjct: 563 QHGLRNSLLLAPMPTASTSQILGFNECFEPYTNNIYMRRVLAGEFQVVNPWLLRELVELG 622

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D+MK ++I + GSIQ+I GIP  +K LYKTVWEI QK ++DMAADRGAF+ QSQSLN
Sbjct: 623 LWNDSMKQKIIAHGGSIQNIPGIPDHIKALYKTVWEISQKVIIDMAADRGAFVCQSQSLN 682

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           I+++  ++ +++SMHF+GWK GLKTG YYLRT+PAA+AIQFT+   ++A A A++
Sbjct: 683 IHLSAPSFGQLTSMHFYGWKKGLKTGSYYLRTRPAASAIQFTVSNEEIAEAKATR 737



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/199 (67%), Positives = 170/199 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW  TPTDLWDWA+LK KIA+HG+RNSLL+APMPTAST+QILG NE FEPYT+NIY
Sbjct: 539 LQYDMWNRTPTDLWDWASLKAKIAQHGLRNSLLLAPMPTASTSQILGFNECFEPYTNNIY 598

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN  LLR+LVELGLW+D+MK ++I + GSIQ+I GIP  +K LYKTVWE
Sbjct: 599 MRRVLAGEFQVVNPWLLRELVELGLWNDSMKQKIIAHGGSIQNIPGIPDHIKALYKTVWE 658

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRGAF+ QSQSLNI+++  ++ +++SMHF+GWK GLKTG YYLRT+PAA
Sbjct: 659 ISQKVIIDMAADRGAFVCQSQSLNIHLSAPSFGQLTSMHFYGWKKGLKTGSYYLRTRPAA 718

Query: 949 NAIQFTIDKTKMANAMASK 967
           +AIQFT+   ++A A A++
Sbjct: 719 SAIQFTVSNEEIAEAKATR 737



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   IGVQGLAD F+ M  PFD  E+R LN QIFETIY+ ALE SCE+A + 
Sbjct: 464 ARRSNMRHRPIGIGVQGLADAFMIMGYPFDSQEARRLNLQIFETIYHAALERSCELAEQY 523

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G Y+TY+GSP SQGILQYDMW  TPTDLWDWA+LK     +GL+
Sbjct: 524 GTYETYQGSPASQGILQYDMWNRTPTDLWDWASLKAKIAQHGLR 567



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 61/75 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+F++L+KN GK+E RARDLF  +W+PD FM+RVE +  WSLMC
Sbjct: 263 RPGAFAIYLEPWHPDVFEFVDLRKNHGKDEVRARDLFLAMWVPDLFMKRVEKNEDWSLMC 322

Query: 61  PNACRGLSDSWGEKF 75
           P    GL+D +GE+F
Sbjct: 323 PAEAPGLADCYGEEF 337



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 68/109 (62%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA +  A        +A+L ++I       L+K+   +KS  Q   VI++
Sbjct: 20  GVTTVELDNLAA-ETAAYKTTTHPDYAVLAARIAISN---LHKE--TKKSFSQ---VIQD 70

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L++ VN +TG  + MIS++ +  +MK+ + L+SAIIY+RDF+YNFFGFK
Sbjct: 71  LHDYVNPKTGRPSSMISEETFNTVMKHRELLDSAIIYERDFHYNFFGFK 119



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++QIETG P+MLYKDA NRKSNQ+NL  I+
Sbjct: 354 VKAQKLWYAILEAQIETGNPFMLYKDAANRKSNQKNLGTIK 394


>gi|221059988|ref|XP_002260639.1| ribonucleoside-diphosphate reductase, large subunit [Plasmodium
           knowlesi strain H]
 gi|193810713|emb|CAQ42611.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Plasmodium knowlesi strain H]
          Length = 848

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/517 (62%), Positives = 398/517 (76%), Gaps = 10/517 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENQNWTLMC 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+SWG +F+ LY KYE EG   + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 392 PNECPGLSESWGAEFEKLYLKYEEEGMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 451

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   + +NF KL ++ K
Sbjct: 452 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDVDKREFNFKKLYEITK 511

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL++II+ N+YPV+EA  SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 512 IITRNLDQIIERNYYPVQEAERSNKRHRPIGIGVQGLADTFMLLRYPYESDSAKELNKRI 571

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY ALE S E+A   GPY+TY+GSP SQGILQ+DMW V      WDW  LKEKI K
Sbjct: 572 FETMYYAALEMSMELAQIYGPYETYQGSPASQGILQFDMWNVKVDNKYWDWDKLKEKIKK 631

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 632 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 691

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGS+Q I  IP  LK+LYKTVWEI QK ++DMAADRGAFIDQSQSLNI
Sbjct: 692 WDEDMKQQLIAHNGSVQYISEIPNDLKELYKTVWEIKQKNIIDMAADRGAFIDQSQSLNI 751

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA   K+     
Sbjct: 752 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTQVAKNAAKMKNEEGVA 811

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKED-CIGVQG 597
                S+E I  +       +   R NK+D C+   G
Sbjct: 812 ITREVSRETISTESTVTQNVVCPLRRNKDDQCLMCSG 848



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 147/239 (61%), Positives = 176/239 (73%), Gaps = 10/239 (4%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V      WDW  LKEKI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 606 LQFDMWNVKVDNKYWDWDKLKEKIKKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 665

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGS+Q I  IP  LK+LYKTVW
Sbjct: 666 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSVQYISEIPNDLKELYKTVW 725

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGAFIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 726 EIKQKNIIDMAADRGAFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 785

Query: 948 ANAIQFTIDKTKMANAMASKD------TR--SQEEIQADQEQAMAAMICRRDNKED-CL 997
            +AI+FT+D     NA   K+      TR  S+E I  +       +   R NK+D CL
Sbjct: 786 TDAIKFTVDTQVAKNAAKMKNEEGVAITREVSRETISTESTVTQNVVCPLRRNKDDQCL 844



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 332 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENQNWTLMC 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS+SWG +F+ LY KYE EG+
Sbjct: 392 PNECPGLSESWGAEFEKLYLKYEEEGM 418



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R P++ + ++ LNK+IFET+YY ALE S E+A   GPY+TY+GSP S
Sbjct: 543 IGVQGLADTFMLLRYPYESDSAKELNKRIFETMYYAALEMSMELAQIYGPYETYQGSPAS 602

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW V      WDW  LK     +GL+
Sbjct: 603 QGILQFDMWNVKVDNKYWDWDKLKEKIKKHGLR 635



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL SQIETG PYMLYKD+CN KSNQ+NL  I+
Sbjct: 423 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 463



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G ++  + + V+QG++     G+   +L + AA +  A +      F+IL ++I T    
Sbjct: 69  GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 123

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
               D  ++ ++    EV E LY M     G    +IS + Y+ ++++ DRLN  I Y R
Sbjct: 124 ----DNLHKNTSDDIAEVAEALY-MYKDVRGRPASLISKEVYDFMIQHKDRLNKEIDYTR 178

Query: 761 DFNYNFFGFK 770
           DFNY++FGFK
Sbjct: 179 DFNYDYFGFK 188


>gi|365761070|gb|EHN02746.1| Rnr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 886

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/467 (65%), Positives = 383/467 (82%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKNSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLNK+ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNKVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++E+SCE+A RDGPY+T++GSP SQGILQ+DMW   P  +WDW AL+E 
Sbjct: 532 NVQIFETIYHASMESSCELAQRDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDALRED 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 ITKHGIRNSLTVAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 154/189 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW AL+E I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDALREDITKHGIRNSLTVAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSIYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++E+SCE+A RDGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNVQIFETIYHASMESSCELAQRDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW AL+     +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDALREDITKHGIR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYLTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|242063422|ref|XP_002453000.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
 gi|241932831|gb|EES05976.1| hypothetical protein SORBIDRAFT_04g036410 [Sorghum bicolor]
          Length = 810

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/522 (61%), Positives = 403/522 (77%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW+PD FM RV+ + QWSL C
Sbjct: 293 RKGAFAVYLEPWHPDIFEFLDLKKNHGKEENRARDLFYALWVPDLFMERVQHNEQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F +LY+KYE EGK  + V A+ LWF IL +QIETGTPYMLYKDACN
Sbjct: 353 PSEAPGLADCWGDEFQNLYQKYEREGKAKKVVAAQALWFDILKAQIETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++         +PA     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPSETAVCNLASIALPRFVREKGVPIESHPAKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  IVT NLNKIID+++YP+E AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 SGSKNRYFDFDKLAEITSIVTCNLNKIIDISYYPIENARRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY +L+AS E+AA++GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYAGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+  W+W+A++E I++ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 VPSSRWNWSAIREMISQVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+G+W   +K+++I  +GS+Q I  +P  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLSEMGVWSPVLKNKIIYEDGSVQKITEVPDDLKAIYKTVWEIKQKTIVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N  K++S+HFHGW  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAIDRGCYIDQSQSLNIHMEQPNSGKLTSLHFHGWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            T + +    K   S+EE   D +  MA + C  +N+E+C+ 
Sbjct: 773 TTLLKD----KQPTSEEE---DAQVKMAQVACSLNNREECLA 807



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 174/226 (76%), Gaps = 7/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+  W+W+A++E I++ G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVVPSSRWNWSAIREMISQVGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+G+W   +K+++I  +GS+Q I  +P  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLSEMGVWSPVLKNKIIYEDGSVQKITEVPDDLKAIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLNI+M + N  K++S+HFHGW  GLKTGMYYLRT+ AA+AI
Sbjct: 708 KTIVDMAIDRGCYIDQSQSLNIHMEQPNSGKLTSLHFHGWSKGLKTGMYYLRTRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D T + +    K   S+EE   D +  MA + C  +N+E+CL
Sbjct: 768 KFTVDTTLLKD----KQPTSEEE---DAQVKMAQVACSLNNREECL 806



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 81/117 (69%), Gaps = 8/117 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+LKKN GKEE RARDLFY LW+PD FM RV+ + QWSL C
Sbjct: 293 RKGAFAVYLEPWHPDIFEFLDLKKNHGKEENRARDLFYALWVPDLFMERVQHNEQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTG 117
           P+   GL+D WG++F +LY+KYE EG       A A++        FD L+ +  TG
Sbjct: 353 PSEAPGLADCWGDEFQNLYQKYEREGKAKKVVAAQALW--------FDILKAQIETG 401



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY +L+AS E+AA++GPY+TY GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSPEAQQLNKDIFETIYYHSLKASAELAAKEGPYETYAGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMW V P+  W+W+A++ +    GL+   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWNVVPSSRWNWSAIREMISQVGLR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P++ +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLSEMGVWSPVLKNK 677



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL +QIETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 379 KAKKVVAAQALWFDILKAQIETGTPYMLYKDACNRKSNQQNLGTIK 424



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            ++ LY   ++ +G   P+I+D  + IIMKN  RL   I YDRDF+Y++FGFK
Sbjct: 97  TVKALYTHYDERSGLMAPLIADDVFTIIMKNTARLECEINYDRDFDYDYFGFK 149


>gi|156836703|ref|XP_001642400.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156112918|gb|EDO14542.1| hypothetical protein Kpol_259p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 874

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/486 (63%), Positives = 394/486 (81%), Gaps = 9/486 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +GE+F+ LY +Y AEG+  + + A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLEEVYGEEFEALYNRYVAEGRGRKTIKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSN +NLGTIK SNLC EIVEY++ DE AVCNLASIAL  +I  ++    +TYNF KL 
Sbjct: 413 TKSNHKNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEVSEDGRSQTYNFKKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +++K+VT+NLNK+ID N+YPVEEARNSN RHRPI +GVQGLAD F+ +R+PF+  E++ L
Sbjct: 473 EISKVVTRNLNKVIDRNYYPVEEARNSNFRHRPIALGVQGLADTFMLLRIPFESKEAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+ ALEASCE+A ++G Y++Y  SPVSQG+LQYDMW   P+DLWDWA LKE+
Sbjct: 533 NTHIFETMYHAALEASCELAEKEGYYESYPNSPVSQGVLQYDMWNRKPSDLWDWATLKEQ 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSLL+APMPTAST+QILG NE FEP+TSN+Y RRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD++MK  LI +NGSIQ++  IPQ+LKDLYKTVWEI QKT++DMA DR AFIDQS S
Sbjct: 653 LGIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWEISQKTIIDMATDRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +NI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK+     +A + A+
Sbjct: 713 MNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKS-----VADQAAK 767

Query: 567 SQEEIQ 572
           S  +++
Sbjct: 768 STADLE 773



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/198 (68%), Positives = 164/198 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   P+DLWDWA LKE+I KHGVRNSLL+APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQYDMWNRKPSDLWDWATLKEQIKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN +LLRDLV+LG+WD++MK  LI +NGSIQ++  IPQ+LKDLYKTVWE
Sbjct: 631 QRRVLSGEFQIVNPYLLRDLVDLGIWDESMKQHLITDNGSIQNLPNIPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMA DR AFIDQS S+NI++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKTIIDMATDRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFTIDK+    A  S
Sbjct: 751 AAIQFTIDKSVADQAAKS 768



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + +GE+F+ LY +Y AEG
Sbjct: 353 PSEAPGLEEVYGEEFEALYNRYVAEG 378



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+PF+  E++ LN  IFET+Y+ ALEASCE+A ++G Y++Y  SPV
Sbjct: 507 ALGVQGLADTFMLLRIPFESKEAKELNTHIFETMYHAALEASCELAEKEGYYESYPNSPV 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQYDMW   P+DLWDWA LK     +G++
Sbjct: 567 SQGVLQYDMWNRKPSDLWDWATLKEQIKKHGVR 599



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 39  VTQRIITGVYEGVTTIELDNLAA-ETAAYMTTVHPDYATLAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+++LY+ +N E     P++S++ Y I+M++ D LNSAI+YDRDF +N+FGFK
Sbjct: 90  TTKLFSQVVDDLYHYINPENSKHAPLVSEEVYNIVMEHKDELNSAIVYDRDFQFNYFGFK 149



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+MLYKDACN KSN +NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFMLYKDACNTKSNHKNLGTIK 424


>gi|311748426|ref|ZP_07722211.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
 gi|126576939|gb|EAZ81187.1| ribonucleoside-diphosphate reductase, alpha subunit [Algoriphagus
           sp. PR1]
          Length = 799

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/506 (62%), Positives = 403/506 (79%), Gaps = 8/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+ DFL+LK+N GKEE RARDLFY LWI D FM+RVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNETWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE+F+ LY+KYE EG+    V A++LWF IL+SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLSDCYGEEFERLYEKYEKEGRARETVKAQELWFEILESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTY-NFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYT+ DEVAVCNLAS+AL  ++   P  K + +  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASLALPKFVRTGPDGKLFFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+ T+NLNK+IDVN+YPV+EAR SN RHRPIG+GVQGLAD FI +R+PF+  E++ LN
Sbjct: 473 ITKVATRNLNKVIDVNYYPVDEARRSNFRHRPIGLGVQGLADAFIMLRMPFESAEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIYY A+E S E+A  +G Y+TYEGSP S+GILQ+DMWGVTP ++ W+W  LKEK
Sbjct: 533 EDIFETIYYAAVETSMELAKVEGTYETYEGSPASKGILQFDMWGVTPKSERWNWTELKEK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K G+RNSLL+APMPTAST+QILGNNE FEPYT+NIY+RR LSGEF VVN HL++DL+ 
Sbjct: 593 VKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRTLSGEFIVVNKHLMKDLIR 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLWDDNM+++LI  NGS+Q + G+PQ +KDLYKTVWEI QK ++D+AADRGA+I QSQS
Sbjct: 653 LGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVWEISQKVIIDLAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N+++ + N+ K++SMHF+ WK GLKTGMYYLR++ AA+AI+FT+DK+ +   +   D  
Sbjct: 713 MNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAAASAIKFTLDKSNLEPKV---DKA 769

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
            QEEI A +     A+ C  D+ + C
Sbjct: 770 MQEEIDA-KSLKQDAISCSLDDPDGC 794



 Score =  295 bits (755), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 181/229 (79%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP ++ W+W  LKEK+ K G+RNSLL+APMPTAST+QILGNNE FEPYT+NI
Sbjct: 570 LQFDMWGVTPKSERWNWTELKEKVKKVGLRNSLLVAPMPTASTSQILGNNECFEPYTTNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL+ LGLWDDNM+++LI  NGS+Q + G+PQ +KDLYKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMKDLIRLGLWDDNMRNRLISTNGSVQSLPGVPQNIKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++D+AADRGA+I QSQS+N+++ + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 EISQKVIIDLAADRGAYICQSQSMNVFLQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           A+AI+FT+DK+ +   +   D   QEEI A +     A+ C  D+ + C
Sbjct: 750 ASAIKFTLDKSNLEPKV---DKAMQEEIDA-KSLKQDAISCSLDDPDGC 794



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+ DFL+LK+N GKEE RARDLFY LWI D FM+RVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADVKDFLDLKRNHGKEEMRARDLFYALWISDLFMKRVEQNETWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GLSD +GE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLSDCYGEEFERLYEKYEKEG 378



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+  E++ LN+ IFETIYY A+E S E+A  +G Y+TYEGSP S
Sbjct: 507 LGVQGLADAFIMLRMPFESAEAKGLNEDIFETIYYAAVETSMELAKVEGTYETYEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP ++ W+W  LK      GL+
Sbjct: 567 KGILQFDMWGVTPKSERWNWTELKEKVKKVGLR 599



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWF IL+SQIETGTPYMLYKDA N+KSNQQNL  I+
Sbjct: 384 VKAQELWFEILESQIETGTPYMLYKDAANKKSNQQNLGTIK 424



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTSELDNLAA-EVCASLTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +TG    +I  + Y ++ KNA +L++ I Y RDF Y++FG+K
Sbjct: 101 LYTYINPKTGGNASLIDPEVYGVVKKNAAKLDAIIDYKRDFGYDYFGYK 149


>gi|237841871|ref|XP_002370233.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|211967897|gb|EEB03093.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii ME49]
 gi|221482702|gb|EEE21040.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii GT1]
 gi|221503104|gb|EEE28810.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Toxoplasma gondii VEG]
          Length = 877

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/511 (62%), Positives = 403/511 (78%), Gaps = 16/511 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 350 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 409

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL++ WG++F +LY++YE EG+  + +PA+ LWFAIL +QIETGTPYMLYKDACN
Sbjct: 410 PNECPGLTEVWGDEFKELYERYEREGRGRKTIPAQHLWFAILQAQIETGTPYMLYKDACN 469

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTE+VEYTSKDEVAVCNLAS++L  +++   +T+++  LK + K
Sbjct: 470 RKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYEHLKRIVK 529

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN++ID N+YPV EA+ SN+RHRP+G+GVQGLAD F+ +R PFD  E+R+LN+ I
Sbjct: 530 VMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNI 589

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FE IY+ ALEASCE+AA +GPY TYEGSPVSQGILQ+DMWGVTP+  L DW  L+EKI  
Sbjct: 590 FECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPSSGLCDWDGLREKIKA 649

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL++PMPTAST+QILGNNE+FEPYTSNIY RRVLSGEF VVN HLLRDL+E  L
Sbjct: 650 HGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLLERDL 709

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W +++K QLI +NGS+Q+++ IP  LK LYKTVWEI Q+ VLD+A DR  FIDQS SLNI
Sbjct: 710 WSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSHSLNI 769

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-------KTKMANAMAS 562
           +M    YAK+S+MHF+GW+ GLKTG+YYLRT+ AA+AI+FT+D       K K++ A   
Sbjct: 770 HMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDSQLAMSAKAKLSGATVG 829

Query: 563 KDARSQEEIQADQEQAMA--------AMICR 585
               +      D+ Q +A        A +CR
Sbjct: 830 ALTTTSSGADEDKRQDVAETEKIEPVAPVCR 860



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 173/237 (72%), Gaps = 16/237 (6%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP+  L DW  L+EKI  HGVRNSLL++PMPTAST+QILGNNE+FEPYTSNI
Sbjct: 624 LQFDMWGVTPSSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNI 683

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLLRDL+E  LW +++K QLI +NGS+Q+++ IP  LK LYKTVW
Sbjct: 684 YYRRVLSGEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVW 743

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ VLD+A DR  FIDQS SLNI+M    YAK+S+MHF+GW+ GLKTG+YYLRT+ A
Sbjct: 744 EIKQRVVLDLAIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAA 803

Query: 948 ANAIQFTID-------KTKMANAMASKDTRSQEEIQADQEQAMA--------AMICR 989
           A+AI+FT+D       K K++ A     T +      D+ Q +A        A +CR
Sbjct: 804 ADAIKFTVDSQLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCR 860



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 350 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 409

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL++ WG++F +LY++YE EG
Sbjct: 410 PNECPGLTEVWGDEFKELYERYEREG 435



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PFD  E+R+LN+ IFE IY+ ALEASCE+AA +GPY TYEGSPVS
Sbjct: 561 LGVQGLADAFMLLRYPFDSPEARVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVS 620

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           QGILQ+DMWGVTP+  L DW  L+     +G++
Sbjct: 621 QGILQFDMWGVTPSSGLCDWDGLREKIKAHGVR 653



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL +QIETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 446 LWFAILQAQIETGTPYMLYKDACNRKSNQKNLGTIK 481



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     G+  ++L D AA +  A +      F+ L ++I          D  ++ 
Sbjct: 97  VAQAVINGMYAGIRTSELDDLAA-QTSAYMAASHPDFSRLAARIAI--------DNLHKN 147

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +    L VI++L+  V+K  G    ++S + YE + +N   LN A+ Y RDF+Y++FGFK
Sbjct: 148 TTDNFLTVIDQLHGYVDK-LGREAKLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFK 206


>gi|190346673|gb|EDK38820.2| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/471 (65%), Positives = 389/471 (82%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + +G++F+ LY+KYE EG+    + A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLPEVYGDEFEALYEKYEREGRGRSTIKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  ++   + +  YNF KL +V
Sbjct: 413 KKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K VT NLN+IID N+YPV EAR SNMR+RPI +GVQGLAD F+ +RLPFD  E++ LN 
Sbjct: 473 TKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GA+EAS E+A ++GPY++YEGSP SQG+LQ+D+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTELWDWDTLKQKMA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D+MK+ +I NNGSIQ++  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 LWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D +   NA
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDSSTSVNA 763



 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 166/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWDRKPTELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LGLW+D+MK+ +I NNGSIQ++  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D +   NA
Sbjct: 749 AAIQFTVDSSTSVNA 763



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 75/97 (77%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+GA+EAS E+A ++GPY++YE
Sbjct: 501 NRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFETIYHGAVEASIELAQKEGPYESYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQG+LQ+D+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASQGLLQFDLWDRKPTELWDWDTLKQKMAKHGLR 597



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLPEVYGDEFEALYEKYEREG 378



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GV   +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYQGVNTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V +ELY+ +N +T   +PMIS + Y++I K+AD LNSAI++DRDFNYN+FGFK
Sbjct: 90  TTKQFSQVSKELYDYINPKTDLHSPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFK 149



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+MLYKDACN+K+NQ+NL +I+
Sbjct: 388 KLWYAILEAQTETGTPFMLYKDACNKKTNQKNLGIIK 424


>gi|95007128|emb|CAJ20349.1| ribonucleoside-diphosphate reductase, large chain [Toxoplasma
           gondii RH]
          Length = 855

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/511 (62%), Positives = 403/511 (78%), Gaps = 16/511 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 328 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 387

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL++ WG++F +LY++YE EG+  + +PA+ LWFAIL +QIETGTPYMLYKDACN
Sbjct: 388 PNECPGLTEVWGDEFKELYERYEREGRGRKTIPAQHLWFAILQAQIETGTPYMLYKDACN 447

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTE+VEYTSKDEVAVCNLAS++L  +++   +T+++  LK + K
Sbjct: 448 RKSNQKNLGTIKCSNLCTEVVEYTSKDEVAVCNLASVSLPKFVDRESRTFDYEHLKRIVK 507

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN++ID N+YPV EA+ SN+RHRP+G+GVQGLAD F+ +R PFD  E+R+LN+ I
Sbjct: 508 VMTRNLNRVIDRNYYPVPEAKKSNLRHRPVGLGVQGLADAFMLLRYPFDSPEARVLNRNI 567

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FE IY+ ALEASCE+AA +GPY TYEGSPVSQGILQ+DMWGVTP+  L DW  L+EKI  
Sbjct: 568 FECIYFAALEASCELAAEEGPYATYEGSPVSQGILQFDMWGVTPSSGLCDWDGLREKIKA 627

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL++PMPTAST+QILGNNE+FEPYTSNIY RRVLSGEF VVN HLLRDL+E  L
Sbjct: 628 HGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNIYYRRVLSGEFFVVNPHLLRDLLERDL 687

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W +++K QLI +NGS+Q+++ IP  LK LYKTVWEI Q+ VLD+A DR  FIDQS SLNI
Sbjct: 688 WSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVWEIKQRVVLDLAIDRAPFIDQSHSLNI 747

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-------KTKMANAMAS 562
           +M    YAK+S+MHF+GW+ GLKTG+YYLRT+ AA+AI+FT+D       K K++ A   
Sbjct: 748 HMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAAADAIKFTVDSQLAMSAKAKLSGATVG 807

Query: 563 KDARSQEEIQADQEQAMA--------AMICR 585
               +      D+ Q +A        A +CR
Sbjct: 808 ALTTTSSGADEDKRQDVAETEKIEPVAPVCR 838



 Score =  264 bits (675), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 173/237 (72%), Gaps = 16/237 (6%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP+  L DW  L+EKI  HGVRNSLL++PMPTAST+QILGNNE+FEPYTSNI
Sbjct: 602 LQFDMWGVTPSSGLCDWDGLREKIKAHGVRNSLLVSPMPTASTSQILGNNEAFEPYTSNI 661

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLLRDL+E  LW +++K QLI +NGS+Q+++ IP  LK LYKTVW
Sbjct: 662 YYRRVLSGEFFVVNPHLLRDLLERDLWSEDVKQQLIAHNGSVQNMDVIPDDLKALYKTVW 721

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ VLD+A DR  FIDQS SLNI+M    YAK+S+MHF+GW+ GLKTG+YYLRT+ A
Sbjct: 722 EIKQRVVLDLAIDRAPFIDQSHSLNIHMVNPTYAKLSTMHFYGWRGGLKTGLYYLRTQAA 781

Query: 948 ANAIQFTID-------KTKMANAMASKDTRSQEEIQADQEQAMA--------AMICR 989
           A+AI+FT+D       K K++ A     T +      D+ Q +A        A +CR
Sbjct: 782 ADAIKFTVDSQLAMSAKAKLSGATVGALTTTSSGADEDKRQDVAETEKIEPVAPVCR 838



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH D+FDFL++KKN GKEE RARDLF  LWIPD FM RV  +A W+LMC
Sbjct: 328 RKGSLAIYLEPWHFDVFDFLDIKKNHGKEERRARDLFCALWIPDLFMERVNDNAGWTLMC 387

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL++ WG++F +LY++YE EG
Sbjct: 388 PNECPGLTEVWGDEFKELYERYEREG 413



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R PFD  E+R+LN+ IFE IY+ ALEASCE+AA +GPY TYEGSPVS
Sbjct: 539 LGVQGLADAFMLLRYPFDSPEARVLNRNIFECIYFAALEASCELAAEEGPYATYEGSPVS 598

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           QGILQ+DMWGVTP+  L DW  L+     +G++
Sbjct: 599 QGILQFDMWGVTPSSGLCDWDGLREKIKAHGVR 631



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL +QIETGTPYMLYKDACNRKSNQ+NL  I+
Sbjct: 424 LWFAILQAQIETGTPYMLYKDACNRKSNQKNLGTIK 459



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     G+  ++L D AA +  A +      F+ L ++I          D  ++ 
Sbjct: 75  VAQAVINGMYAGIRTSELDDLAA-QTSAYMAASHPDFSRLAARIAI--------DNLHKN 125

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +    L VI++L+  V+K  G    ++S + YE + +N   LN A+ Y RDF+Y++FGFK
Sbjct: 126 TTDNFLTVIDQLHGYVDK-LGREAKLVSTEVYEFVRENEQALNEALNYSRDFDYDYFGFK 184


>gi|384246529|gb|EIE20019.1| NSG5 protein [Coccomyxa subellipsoidea C-169]
          Length = 847

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/554 (59%), Positives = 406/554 (73%), Gaps = 54/554 (9%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM RVES+A WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTTDLFMERVESNADWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG++   LY +YE EG+  R + A++LWFAIL++Q+ETG PYML+KD+CN
Sbjct: 353 PNEAPGLADCWGDEHAALYTRYEREGRAKRVIKAQQLWFAILEAQVETGNPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIKCSNLCTEIVE+TS +E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEFTSPEETAVCNLASIALPRYVREREGTPSSGRPKLAGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            N  ++ ++F KL++V  I+T+NLNKIID+NFYP E AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LNAPNRYFDFEKLQEVTHIITENLNKIIDINFYPAETARRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK+IFETIY+ ALE SC +A  DGPY+TY GSPVS+G+LQ+DMW V
Sbjct: 533 LLGMPFDSAEAKQLNKEIFETIYFAALEKSCSLAKTDGPYETYAGSPVSKGVLQHDMWEV 592

Query: 373 TP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            P +  WDW  L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVLSG
Sbjct: 593 QPPSQRWDWDTLRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSG 652

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN HLL DLV  GLW  + K++L+  NGS+Q ++ IP  LK LYKTVWE+ Q+T++
Sbjct: 653 EFTVVNQHLLSDLVASGLWSADTKNELVAANGSVQGLD-IPDDLKALYKTVWELKQRTLV 711

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           DMAADRGAFIDQSQS N++M++ N+ K++S+HF+ WK GLKTGMYYLRT+ AA+AI+FT+
Sbjct: 712 DMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKAGLKTGMYYLRTRAAADAIKFTV 771

Query: 552 DKT--------------------------KMANAMASKDARS------QEEIQADQEQAM 579
           D+                           K  N   S+   S       EE+Q ++E  +
Sbjct: 772 DQQALTKKKAARAAKSAADLAASSVTVALKERNGSPSRQFASVKVAALDEEMQKERE--L 829

Query: 580 AAMICRRDNKEDCI 593
           AAM+C  +NK+ C+
Sbjct: 830 AAMVCSLENKDACL 843



 Score =  278 bits (710), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/262 (53%), Positives = 180/262 (68%), Gaps = 36/262 (13%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW V P +  WDW  L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 585 LQHDMWEVQPPSQRWDWDTLRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 644

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DLV  GLW  + K++L+  NGS+Q ++ IP  LK LYKTVW
Sbjct: 645 YVRRVLSGEFTVVNQHLLSDLVASGLWSADTKNELVAANGSVQGLD-IPDDLKALYKTVW 703

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+ Q+T++DMAADRGAFIDQSQS N++M++ N+ K++S+HF+ WK GLKTGMYYLRT+ A
Sbjct: 704 ELKQRTLVDMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKAGLKTGMYYLRTRAA 763

Query: 948 ANAIQFTIDKT--------------------------KMANAMASKDTRS------QEEI 975
           A+AI+FT+D+                           K  N   S+   S       EE+
Sbjct: 764 ADAIKFTVDQQALTKKKAARAAKSAADLAASSVTVALKERNGSPSRQFASVKVAALDEEM 823

Query: 976 QADQEQAMAAMICRRDNKEDCL 997
           Q ++E  +AAM+C  +NK+ CL
Sbjct: 824 QKERE--LAAMVCSLENKDACL 843



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM RVES+A WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTTDLFMERVESNADWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG++   LY +YE EG
Sbjct: 353 PNEAPGLADCWGDEHAALYTRYEREG 378



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 4/108 (3%)

Query: 581 AMICRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIA 637
           A   RR N   +   IGVQGLAD FI + +PFD  E++ LNK+IFETIY+ ALE SC +A
Sbjct: 507 AETARRSNMRHRPIGIGVQGLADTFILLGMPFDSAEAKQLNKEIFETIYFAALEKSCSLA 566

Query: 638 ARDGPYQTYEGSPVSQGILQYDMWGVT-PTDLWDWAALKVLALVYGLK 684
             DGPY+TY GSPVS+G+LQ+DMW V  P+  WDW  L+     +G++
Sbjct: 567 KTDGPYETYAGSPVSKGVLQHDMWEVQPPSQRWDWDTLRASIAQHGVR 614



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   +LWFAIL++Q+ETG PYML+KD+CNRKSNQQNL  I+
Sbjct: 383 VIKAQQLWFAILEAQVETGNPYMLFKDSCNRKSNQQNLGTIK 424



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q +      GVT ++L D AA +  A +      +A L ++I       L+K+     
Sbjct: 39  VAQKVTTGVYKGVTTSELDDLAA-ETAASMTATHPDYATLAARIAISN---LHKNTLKSF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     E ++ +Y+ VN + G  +P+I+   +EI++++A+RL+S IIY+RDF+Y++FGFK
Sbjct: 95  S-----ETMKLMYSHVNPKNGEASPLIARDVFEIVLQHAERLDSEIIYNRDFDYDYFGFK 149


>gi|308798579|ref|XP_003074069.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
 gi|116000241|emb|CAL49921.1| RIR1_BRARE Ribonucleoside-diphosphate reductase large subunit (ISS)
           [Ostreococcus tauri]
          Length = 840

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/533 (61%), Positives = 407/533 (76%), Gaps = 37/533 (6%)

Query: 97  IYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRG 156
           IYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++ +W+LMCPN C G
Sbjct: 305 IYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEWTLMCPNECPG 364

Query: 157 LSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQ 216
           LSD WGE+F+ LY+KYEAEGK  + + A++LWFAIL+SQ+ETG PYML+KDACNRKSNQQ
Sbjct: 365 LSDCWGEEFETLYEKYEAEGKGKKTIKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQ 424

Query: 217 NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKT-------------- 259
           NLGTIK SNLCTEIVEYTS DE AVCNLASIAL  ++   NP+  T              
Sbjct: 425 NLGTIKSSNLCTEIVEYTSPDETAVCNLASIALPRFVIENNPSSPTGRTETKKLVGSLKS 484

Query: 260 ----YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
               ++ +KL ++ + VT+NLN+IIDVN+YPVE A+NSNMRHRPIG+GVQGLAD+FI + 
Sbjct: 485 KERFFDHSKLFEITRKVTRNLNRIIDVNYYPVEAAKNSNMRHRPIGLGVQGLADVFILLG 544

Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 375
           LPFD  E++ LN +IFETIY+ AL  S  +A  +GPY TYEGSPVS+G+LQ DMWG+T  
Sbjct: 545 LPFDSPEAQKLNAEIFETIYFAALTESNALAVAEGPYSTYEGSPVSKGVLQPDMWGLTEM 604

Query: 376 ---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGE
Sbjct: 605 PGGNRHDWAGLRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYARRVLSGE 664

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ELGLWD  +K++LI NNGS+QD++ IP  LK++YKTVWEI Q+ ++D
Sbjct: 665 FTVVNQHLLSDLTELGLWDPELKNELISNNGSVQDLD-IPDNLKNIYKTVWEIKQRVLVD 723

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 724 MAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVD 783

Query: 553 KTKM---------ANAMASKDARSQEEIQADQEQA---MAAMICRRDNKEDCI 593
            TK          A A   K  ++  E   D+E+     A + C   N++DC+
Sbjct: 784 ATKTKSKVNKENEAPASPRKPTKADLEKMTDEEKEAYLAAKLQCSLQNRDDCV 836



 Score =  288 bits (738), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 141/241 (58%), Positives = 180/241 (74%), Gaps = 16/241 (6%)

Query: 772 DMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWG+T     +  DWA L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 597 DMWGLTEMPGGNRHDWAGLRASIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 656

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL ELGLWD  +K++LI NNGS+QD++ IP  LK++YKTVWE
Sbjct: 657 ARRVLSGEFTVVNQHLLSDLTELGLWDPELKNELISNNGSVQDLD-IPDNLKNIYKTVWE 715

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA
Sbjct: 716 IKQRVLVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAA 775

Query: 949 NAIQFTIDKTKM---------ANAMASKDTRSQEEIQADQEQA---MAAMICRRDNKEDC 996
           +AI+FT+D TK          A A   K T++  E   D+E+     A + C   N++DC
Sbjct: 776 DAIKFTVDATKTKSKVNKENEAPASPRKPTKADLEKMTDEEKEAYLAAKLQCSLQNRDDC 835

Query: 997 L 997
           +
Sbjct: 836 V 836



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 69/80 (86%)

Query: 7   IYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRG 66
           IYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++ +W+LMCPN C G
Sbjct: 305 IYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEWTLMCPNECPG 364

Query: 67  LSDSWGEKFDDLYKKYEAEG 86
           LSD WGE+F+ LY+KYEAEG
Sbjct: 365 LSDCWGEEFETLYEKYEAEG 384



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 18/204 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI + LPFD  E++ LN +IFETIY+ AL  S  +A  +GPY TYEGSPVS
Sbjct: 531 LGVQGLADVFILLGLPFDSPEAQKLNAEIFETIYFAALTESNALAVAEGPYSTYEGSPVS 590

Query: 653 QGILQYDMWGVTPT---DLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACN 708
           +G+LQ DMWG+T     +  DWA L+     +G++   ++L + + T  T  +L  + C 
Sbjct: 591 KGVLQPDMWGLTEMPGGNRHDWAGLRASIAQHGVR--NSLLVAPMPTASTSQILGNNECF 648

Query: 709 R--KSNQQNLEVIEELYNMVNKETGTRTPMISDKH----YEIIMKNADRLNSAIIYDRDF 762
               SN     V+   + +VN+       ++SD      ++  +KN    N+  + D D 
Sbjct: 649 EPYTSNIYARRVLSGEFTVVNQH------LLSDLTELGLWDPELKNELISNNGSVQDLDI 702

Query: 763 NYNFFGFKYDMWGVTPTDLWDWAA 786
             N       +W +    L D AA
Sbjct: 703 PDNLKNIYKTVWEIKQRVLVDMAA 726



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL+SQ+ETG PYML+KDACNRKSNQQNL  I+
Sbjct: 394 QLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIK 430



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q +      GVT  +L D  A +  A +      +A+L ++I       L+K      
Sbjct: 56  VAQKVCMGVFAGVTTKEL-DELAAETAASMTSKHPDYALLAARISVSN---LHKTTVKSF 111

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     E ++ +Y  VNK  G  +P+++D  YEIIM NA++L++ ++YDRDF+Y++FGFK
Sbjct: 112 S-----ETMKVMYEHVNKRNGKWSPLLADDVYEIIMANAEKLDAELVYDRDFDYDYFGFK 166


>gi|356512785|ref|XP_003525096.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Glycine max]
 gi|27261142|gb|AAN87547.1|AF118784_1 ribonucleotide reductase large subunit A [Glycine max]
          Length = 809

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/522 (62%), Positives = 395/522 (75%), Gaps = 26/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+ D FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EGK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PNEAPGLADCWGEEFEKLYTQYEREGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           +KSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  Y+         +P+     
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  IV  NLNKIIDVN+YPV+ AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 RGSKNRYFDFDKLGEVTAIVATNLNKIIDVNYYPVDTARRSNMRHRPIGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+ S E+AA++GPY+TY GSP+S+GILQ DMWGV
Sbjct: 533 LLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPISKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+  WDW AL+E IAK GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 MPSSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+ +I  +GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
                 +M  +   ++EE   D    MA M+C   N+E+C+ 
Sbjct: 773 -----TSMLHEKPMAEEE---DDNTKMAQMVCSLTNREECLA 806



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 171/226 (75%), Gaps = 8/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGV P+  WDW AL+E IAK GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVMPSSRWDWDALREMIAKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+ +I  +GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTIKNNIIYEDGSVQKIPEIPDDLKIIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D      +M  +   ++EE   D    MA M+C   N+E+CL
Sbjct: 768 KFTVD-----TSMLHEKPMAEEE---DDNTKMAQMVCSLTNREECL 805



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+ D FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVSDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNEAPGLADCWGEEFEKLYTQYEREG 378



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK IFETIYY AL+ S E+AA++GPY+TY GSP+S
Sbjct: 522 IGVQGLADTFILLGVAFDSPEAQQLNKDIFETIYYHALKTSSELAAKEGPYETYSGSPIS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGV P+  WDW AL+ +    G++
Sbjct: 582 KGILQPDMWGVMPSSRWDWDALREMIAKTGVR 613



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y   N+ +  + P+I+D  YEII+KNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKVMYYHFNERSAMKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CN+KSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNKKSNQQNLGTIK 424


>gi|30519447|emb|CAD90622.1| L4L protein [Cowpox virus]
          Length = 771

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  284 bits (727), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY +YE E
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|256421018|ref|YP_003121671.1| ribonucleoside-diphosphate reductase subunit alpha [Chitinophaga
           pinensis DSM 2588]
 gi|256035926|gb|ACU59470.1| ribonucleoside-diphosphate reductase, alpha subunit [Chitinophaga
           pinensis DSM 2588]
          Length = 802

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/463 (67%), Positives = 382/463 (82%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FMRRVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WGE+F+ LY KYE E +  + V A+ LWFA+LD+QIETGTPY+LYKD+ N
Sbjct: 353 PHEAPGLHECWGEEFEKLYTKYEKENRARKTVKAQDLWFAVLDAQIETGTPYLLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EYT  +EVAVCNLAS+AL  ++   D  ++  KL +V  
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTDANEVAVCNLASLALPRFV--IDGQFDHEKLYEVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
               NLN+IID NFYPV+EARNSN+RHRPIG+GVQGLAD FI MR PF+  E++ LN +I
Sbjct: 471 QAALNLNRIIDNNFYPVDEARNSNLRHRPIGLGVQGLADAFILMRYPFESEEAKKLNSEI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL AS ++A +DG Y+TY GSPVS+GILQ+DMWGVTP+  WDW +LK +I KH
Sbjct: 531 FETIYFAALNASKDLAIKDGAYETYAGSPVSKGILQFDMWGVTPSPRWDWTSLKGEIKKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLVELGLW
Sbjct: 591 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLVELGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D++MK+++I +NGSIQ I  IP ++K+LYKTVWEI Q+T++DMAADRGAFI QSQSLN++
Sbjct: 651 DNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWEIKQRTIIDMAADRGAFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +   + AK++SMHF+ WK GLKTGMYYLRT+ AA A+QFT++K
Sbjct: 711 VDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAAQAVQFTVEK 753



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/189 (70%), Positives = 165/189 (87%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTP+  WDW +LK +I KHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 LQFDMWGVTPSPRWDWTSLKGEIKKHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL+DLVELGLWD++MK+++I +NGSIQ I  IP ++K+LYKTVWE
Sbjct: 625 TRRVLSGEFVVVNKHLLKDLVELGLWDNDMKNKIITSNGSIQHIPEIPSQIKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGAFI QSQSLN+++   + AK++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 685 IKQRTIIDMAADRGAFICQSQSLNLFVDTPSAAKLTSMHFYAWKKGLKTGMYYLRTQAAA 744

Query: 949 NAIQFTIDK 957
            A+QFT++K
Sbjct: 745 QAVQFTVEK 753



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FMRRVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWVPDLFMRRVEENGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL + WGE+F+ LY KYE E
Sbjct: 353 PHEAPGLHECWGEEFEKLYTKYEKE 377



 Score =  122 bits (306), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR PF+  E++ LN +IFETIY+ AL AS ++A +DG Y+TY GSPVS
Sbjct: 502 LGVQGLADAFILMRYPFESEEAKKLNSEIFETIYFAALNASKDLAIKDGAYETYAGSPVS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQ+DMWGVTP+  WDW +LK
Sbjct: 562 KGILQFDMWGVTPSPRWDWTSLK 584



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V++ ++Q    GVT ++L + AA    +L       +A+L S+I       L+K+     
Sbjct: 39  VAKKVIQGLYDGVTTSELDNLAAETAASLTTKHPD-YALLASRIAVSN---LHKNTVKSF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     + +E LYN ++ + G   P+++D  YEI+MK+A  L+S+IIYDRDF +++FGFK
Sbjct: 95  S-----KTMENLYNYIDPKVGKPAPLLADDVYEIVMKHAAILDSSIIYDRDFAFDYFGFK 149



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFA+LD+QIETGTPY+LYKD+ NRKSNQQNL  I+
Sbjct: 389 LWFAVLDAQIETGTPYLLYKDSANRKSNQQNLGTIK 424


>gi|406604875|emb|CCH43750.1| ribonucleoside-diphosphate reductase subunit M1 [Wickerhamomyces
           ciferrii]
          Length = 877

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/473 (65%), Positives = 392/473 (82%), Gaps = 4/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWI D FM+RVES+ +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWISDLFMKRVESNGEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL +++G++F++LY++YE EG+  + V A+KLW+AIL++Q ETGTPYMLYKDACN
Sbjct: 353 PNEAPGLDETYGDEFEELYERYEKEGRGRKTVKAQKLWYAILEAQTETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN-PADKT---YNFTKLK 266
           +K+NQ+NLG IK SNLCTEIVEY+S DEVAVCNLASIAL  +I   AD+    YNF +L 
Sbjct: 413 KKTNQKNLGIIKSSNLCTEIVEYSSPDEVAVCNLASIALPAFIEVSADRKTQFYNFEQLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +AK+VTKNLN+IID NFYPVEEAR SNMR+RPI +GVQGLAD F+ +RLPF+  +++ L
Sbjct: 473 KIAKVVTKNLNRIIDRNFYPVEEARRSNMRNRPIALGVQGLADAFMALRLPFESQKAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ A+EAS E+A ++G Y+T++GSP SQG+LQ+D+W   PT LW+W  LK  
Sbjct: 533 NIQIFETIYHAAVEASVELAKKEGAYETFQGSPASQGLLQFDLWDQKPTGLWNWDDLKAD 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+
Sbjct: 593 VVKYGVRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  +I +NGSIQ++  IP++LKDLYKTVWEI QKTV+DMAADR A+IDQSQS
Sbjct: 653 LGVWDDAMKSHIIADNGSIQNLPNIPKELKDLYKTVWEISQKTVIDMAADRSAYIDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           LNI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFT+D +  ANA
Sbjct: 713 LNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTVDSSVAANA 765



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 144/269 (53%), Positives = 188/269 (69%), Gaps = 14/269 (5%)

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAII------YDRDF 762
           R+SN +N  +   +  + +     R P  S K  E+ ++  + +  A +        ++ 
Sbjct: 497 RRSNMRNRPIALGVQGLADAFMALRLPFESQKAKELNIQIFETIYHAAVEASVELAKKEG 556

Query: 763 NYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL 814
            Y  F          ++D+W   PT LW+W  LK  + K+GVRNSLL+APMPTAST+QIL
Sbjct: 557 AYETFQGSPASQGLLQFDLWDQKPTGLWNWDDLKADVVKYGVRNSLLVAPMPTASTSQIL 616

Query: 815 GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 874
           G NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG+WDD MK  +I +NGSIQ++  
Sbjct: 617 GYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLGVWDDAMKSHIIADNGSIQNLPN 676

Query: 875 IPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLG 934
           IP++LKDLYKTVWEI QKTV+DMAADR A+IDQSQSLNI++      K++SMHF+GWK G
Sbjct: 677 IPKELKDLYKTVWEISQKTVIDMAADRSAYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKG 736

Query: 935 LKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           LKTGMYYLRT+ A+ AIQFT+D +  ANA
Sbjct: 737 LKTGMYYLRTQAASAAIQFTVDSSVAANA 765



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWI D FM+RVES+ +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWISDLFMKRVESNGEWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL +++G++F++LY++YE EG
Sbjct: 353 PNEAPGLDETYGDEFEELYERYEKEG 378



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 73/97 (75%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPF+  +++ LN QIFETIY+ A+EAS E+A ++G Y+T++
Sbjct: 503 NRPIALGVQGLADAFMALRLPFESQKAKELNIQIFETIYHAAVEASVELAKKEGAYETFQ 562

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQG+LQ+D+W   PT LW+W  LK   + YG++
Sbjct: 563 GSPASQGLLQFDLWDQKPTGLWNWDDLKADVVKYGVR 599



 Score = 76.3 bits (186), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTIELDNLAA-ETCAYMTTIHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V++ELYN +N  TG  +PM+S   Y+I+ +  D  NSAI+Y+RDFNYN+FGFK
Sbjct: 90  TTKQFSAVVDELYNYINPRTGKHSPMLSKDTYDIVQEFKDEFNSAIVYNRDFNYNYFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 36/41 (87%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++Q ETGTPYMLYKDACN+K+NQ+NL +I+
Sbjct: 384 VKAQKLWYAILEAQTETGTPYMLYKDACNKKTNQKNLGIIK 424


>gi|146418447|ref|XP_001485189.1| hypothetical protein PGUG_02918 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 863

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/471 (65%), Positives = 389/471 (82%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + +G++F+ LY+KYE EG+    + A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLPEVYGDEFEALYEKYEREGRGRSTIKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  ++   + +  YNF KL +V
Sbjct: 413 KKTNQKNLGIIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVESDNNSTWYNFDKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K VT NLN+IID N+YPV EAR SNMR+RPI +GVQGLAD F+ +RLPFD  E++ LN 
Sbjct: 473 TKTVTGNLNRIIDRNYYPVPEARRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GA+EAS E+A ++GPY++YEGSP SQG+LQ+D+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHGAVEASIELAQKEGPYESYEGSPASQGLLQFDLWDRKPTELWDWDTLKQKMA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D+MK+ +I NNGSIQ++  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 LWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D +   NA
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDLSTSVNA 763



 Score =  296 bits (757), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 134/195 (68%), Positives = 166/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWDRKPTELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LGLW+D+MK+ +I NNGSIQ++  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGLWNDSMKNNIISNNGSIQNLPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D +   NA
Sbjct: 749 AAIQFTVDLSTSVNA 763



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 75/97 (77%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+GA+EAS E+A ++GPY++YE
Sbjct: 501 NRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFETIYHGAVEASIELAQKEGPYESYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQG+LQ+D+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASQGLLQFDLWDRKPTELWDWDTLKQKMAKHGLR 597



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + +G++F+ LY+KYE EG
Sbjct: 353 PNEAPGLPEVYGDEFEALYEKYEREG 378



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GV   +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYQGVNTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V +ELY+ +N +T   +PMIS + Y++I K+AD LNSAI++DRDFNYN+FGFK
Sbjct: 90  TTKQFSQVSKELYDYINPKTDLHSPMISKETYDVIQKHADELNSAIVFDRDFNYNYFGFK 149



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+MLYKDACN+K+NQ+NL +I+
Sbjct: 388 KLWYAILEAQTETGTPFMLYKDACNKKTNQKNLGIIK 424


>gi|325557813|gb|ADZ29195.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNEEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D WG++F+ LY +YE E
Sbjct: 353 PDECPGLDDVWGDEFERLYTQYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|94486937|gb|ABF26038.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASTPIQFTLDKDKI 755



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 TPIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D    ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|373448219|gb|AEY73601.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY +YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|325558243|gb|ADZ29623.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/466 (66%), Positives = 386/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W + P+DLW+W +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQIVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W + P+DLW+W +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNIVPSDLWNWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQIVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 77/104 (74%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W + P+DLW+W +LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSYGLR 593



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|373447735|gb|AEY73119.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|373449644|gb|AEY75020.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY +YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTQYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|94486532|gb|ABF25635.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486734|gb|ABF25836.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMTFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D    ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|444318263|ref|XP_004179789.1| hypothetical protein TBLA_0C04740 [Tetrapisispora blattae CBS 6284]
 gi|387512830|emb|CCH60270.1| hypothetical protein TBLA_0C04740 [Tetrapisispora blattae CBS 6284]
          Length = 889

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/479 (65%), Positives = 387/479 (80%), Gaps = 5/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A++LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ +  W+L  
Sbjct: 293 RPGAIALFLEPWHDDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVKENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F+ LY +Y  EGK  R + A+KLW++IL++Q ETGTP++ YKDA N
Sbjct: 353 PSEAPGLSDVYGDEFEALYNRYVEEGKGRRTIKAQKLWYSILEAQTETGTPFICYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK----TYNFTKLK 266
           +KSNQ+NLGTIK SNLC EI+EY++ DE AVCNLAS+AL  +I   D      Y+F KL 
Sbjct: 413 KKSNQKNLGTIKSSNLCCEIIEYSAPDETAVCNLASVALPAFIKKTDDGNSFIYDFEKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++ K++T+NLNK+ID N+YPV EA+NSNMRHRP+ +GVQGLAD F  +RLPF+ +E+R L
Sbjct: 473 EITKVITRNLNKVIDRNYYPVPEAKNSNMRHRPVALGVQGLADTFQILRLPFESDEARDL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+ ALEASCEIAA +GPY TYEGSPVSQGILQYDMW VTPTDLWDW +LK  
Sbjct: 533 NAHIFETMYHAALEASCEIAAVEGPYSTYEGSPVSQGILQYDMWDVTPTDLWDWDSLKAN 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSLL+APMPTAST+QILG NE FEP+TSN+YSRR LSGEFQ+VN +LLRDLV+
Sbjct: 593 IKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMYSRRTLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  LI +NGSIQ +  IPQ+LK+LYKTVWEI QK ++DMAADR AFIDQS S
Sbjct: 653 LGIWDDAMKQHLITDNGSIQKLPNIPQELKELYKTVWEISQKKIIDMAADRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LNI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK K+A+   +K A
Sbjct: 713 LNIHIQAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK-KIADQAGNKVA 770



 Score =  297 bits (760), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/199 (69%), Positives = 165/199 (82%), Gaps = 1/199 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  I KHGVRNSLL+APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQYDMWDVTPTDLWDWDSLKANIKKHGVRNSLLLAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR LSGEFQ+VN +LLRDLV+LG+WDD MK  LI +NGSIQ +  IPQ+LK+LYKTVWE
Sbjct: 631 SRRTLSGEFQIVNPYLLRDLVDLGIWDDAMKQHLITDNGSIQKLPNIPQELKELYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQS SLNI++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKKIIDMAADRSAFIDQSHSLNIHIQAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKTKMANAMASK 967
            AIQFTIDK K+A+   +K
Sbjct: 751 AAIQFTIDK-KIADQAGNK 768



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F  +RLPF+ +E+R LN  IFET+Y+ ALEASCEIAA +GPY TYEGSPV
Sbjct: 507 ALGVQGLADTFQILRLPFESDEARDLNAHIFETMYHAALEASCEIAAVEGPYSTYEGSPV 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQYDMW VTPTDLWDW +LK     +G++
Sbjct: 567 SQGILQYDMWDVTPTDLWDWDSLKANIKKHGVR 599



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A++LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ +  W+L  
Sbjct: 293 RPGAIALFLEPWHDDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVKENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G++F+ LY +Y  EG
Sbjct: 353 PSEAPGLSDVYGDEFEALYNRYVEEG 378



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++       L+K      
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETAAYMTTIHPDYATLAARLAISN---LHKQTTKLF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S      V+EEL N VN E     P++S++ YE + K+ D +NSAI+YDRDF +N+FGFK
Sbjct: 95  ST-----VVEELRNYVNPENNKWAPLVSEELYETVQKHKDEINSAIVYDRDFQFNYFGFK 149



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP++ YKDA N+KSNQ+NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFICYKDAANKKSNQKNLGTIK 424


>gi|94483909|gb|ABF23025.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484112|gb|ABF23227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485317|gb|ABF24426.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485520|gb|ABF24628.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487747|gb|ABF26844.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488154|gb|ABF27249.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488354|gb|ABF27448.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726138|gb|ABG45254.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKQVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 96  EVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|354546793|emb|CCE43525.1| hypothetical protein CPAR2_211690 [Candida parapsilosis]
          Length = 866

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/465 (66%), Positives = 383/465 (82%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN    L+D++G++F +LY+KYE EG+  + + A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPNLADTYGDEFVELYEKYEKEGRGRKTIKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  +I    K   YNF KL DV
Sbjct: 413 TKSNQKNLGVIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFIEQDGKHAWYNFDKLHDV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N+YPV EA  SNMRHRPI +GVQGLAD F+ +R+ FD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMVLRIGFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+AA +GPY+TY+GSP SQG+LQYD+W   PT+LWDW  LKEK+A
Sbjct: 533 QIFETIYHAAVEASIELAAEEGPYETYQGSPASQGLLQYDLWNRKPTELWDWDELKEKLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMA+DR AFIDQSQSLN
Sbjct: 653 IWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHIIDMASDRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 757



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT+LWDW  LKEK+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQYDLWNRKPTELWDWDELKEKLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMA+DR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 749 AAIQFTIDK 757



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    L+D++G++F +LY+KYE EG
Sbjct: 353 PNEAPNLADTYGDEFVELYEKYEKEG 378



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+ FD  E+R LN QIFETIY+ A+EAS E+AA +GPY+TY+GSP 
Sbjct: 505 ALGVQGLADAFMVLRIGFDSQEARELNIQIFETIYHAAVEASIELAAEEGPYETYQGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQYD+W   PT+LWDW  LK     +G++
Sbjct: 565 SQGLLQYDLWNRKPTELWDWDELKEKLAKHGMR 597



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V ++LY  +N ET    PMIS + Y+II +NAD LNSAI+YDRDFNYN+FGFK
Sbjct: 96  QVSKDLYEYINPETNLHAPMISKETYDIIQENADELNSAIVYDRDFNYNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+MLYKDACN KSNQ+NL VI+
Sbjct: 388 KLWYSILEAQTETGTPFMLYKDACNTKSNQKNLGVIK 424


>gi|94484317|gb|ABF23431.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489961|gb|ABF29047.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 96  EVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|325558889|gb|ADZ30266.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY+TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYETYTGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQIVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  285 bits (729), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQIVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 76/104 (73%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYETYTGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|383451661|ref|YP_005358382.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           indicum GPTSA100-9]
 gi|380503283|emb|CCG54325.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           indicum GPTSA100-9]
          Length = 795

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/510 (61%), Positives = 403/510 (79%), Gaps = 19/510 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RVE+DA W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVEADANWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++FD LY+ YE+ GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGDEFDALYESYESAGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS+DE+AVCNLASI+L M+I   +  +N   L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEILEYTSEDEIAVCNLASISLPMFIE--NGQFNHDHLYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVEEA NSNMRHRP+G+GVQGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RITRNLNRVIDRNYYPVEEAYNSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKQLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIY+ A+ AS E+A  +GPY T++GSP+SQG  QY+MWG+  +DL   WDW++L++++
Sbjct: 530 FETIYFAAVTASMELAKEEGPYSTFKGSPISQGEFQYNMWGLQDSDLSGRWDWSSLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSN+Y+RRVLSGEF VVN HLL+DLVEL
Sbjct: 590 MEHGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNLYTRRVLSGEFIVVNKHLLQDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W++ +K +++ NNGSIQ+I GIPQ +KDLY+TVWE+  + ++DM+  RG FIDQSQSL
Sbjct: 650 GIWNEELKQEIMRNNGSIQNIAGIPQDIKDLYRTVWEMSMRDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M     AK++SMHF+ WK GLKTGMYYLRTK AANA+QFT+         A K    
Sbjct: 710 NLFMEGATIAKLNSMHFYAWKSGLKTGMYYLRTKAAANALQFTV---------AKKQESE 760

Query: 568 QEEIQADQE---QAMAAMICRRDNK--EDC 592
            E +Q +QE   +   AMI R  N   EDC
Sbjct: 761 PEVVQVEQEMTAEEFRAMIERSKNAGPEDC 790



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 180/236 (76%), Gaps = 17/236 (7%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWG+  +DL   WDW++L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGLQDSDLSGRWDWSSLRKEVMEHGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           N+Y+RRVLSGEF VVN HLL+DLVELG+W++ +K +++ NNGSIQ+I GIPQ +KDLY+T
Sbjct: 624 NLYTRRVLSGEFIVVNKHLLQDLVELGIWNEELKQEIMRNNGSIQNIAGIPQDIKDLYRT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  + ++DM+  RG FIDQSQSLN++M     AK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWEMSMRDIIDMSRQRGYFIDQSQSLNLFMEGATIAKLNSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQE---QAMAAMICRRDNK--EDC 996
            AANA+QFT+         A K     E +Q +QE   +   AMI R  N   EDC
Sbjct: 744 AAANALQFTV---------AKKQESEPEVVQVEQEMTAEEFRAMIERSKNAGPEDC 790



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RVE+DA W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVEADANWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++FD LY+ YE+ G
Sbjct: 352 PNECPGLYDVYGDEFDALYESYESAG 377



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF  +E++ LN++IFETIY+ A+ AS E+A  +GPY T++GSP+S
Sbjct: 501 LGVQGLADAFIMLRMPFTSDEAKQLNQEIFETIYFAAVTASMELAKEEGPYSTFKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY+MWG+  +DL   WDW++L+   + +G++
Sbjct: 561 QGEFQYNMWGLQDSDLSGRWDWSSLRKEVMEHGVR 595



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 44/54 (81%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + +LY+ VN  TG ++P+++D  YE+IM NA++L+S IIY+RDFNY++FGFK
Sbjct: 95  ETMLDLYHYVNPRTGKKSPLLADDVYEVIMANAEKLDSTIIYNRDFNYDYFGFK 148



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 658 YDMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           YD++G     L++   +A K    +   +LW  IL+SQIETGTPYMLYKDA NRKSNQ+N
Sbjct: 359 YDVYGDEFDALYESYESAGKGRKTIKARELWEKILESQIETGTPYMLYKDAANRKSNQKN 418

Query: 716 LEVI 719
           L  I
Sbjct: 419 LGTI 422


>gi|9627579|ref|NP_042102.1| hypothetical protein VARVgp058 [Variola virus]
 gi|417658|sp|P32984.1|RIR1_VAR67 RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|62335|emb|CAA47558.1| ribonucleotide reductase (large subunit) [Variola virus]
 gi|297239|emb|CAA48999.1| K4L [Variola virus]
 gi|438976|gb|AAA60806.1| homolog of vaccinia virus CDS I4L (ribonucleotide reductase, large
           subunit); putative [Variola major virus]
 gi|544814|gb|AAB29605.1| K4L product [variola virus VAR, India-1967, Peptide, 771 aa]
 gi|94483704|gb|ABF22821.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484521|gb|ABF23634.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484719|gb|ABF23831.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94484917|gb|ABF24028.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485115|gb|ABF24225.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94485722|gb|ABF24829.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486126|gb|ABF25231.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94486329|gb|ABF25433.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487140|gb|ABF26240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487342|gb|ABF26441.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487546|gb|ABF26644.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94487951|gb|ABF27047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488554|gb|ABF27647.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488755|gb|ABF27847.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94488956|gb|ABF28047.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489155|gb|ABF28245.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489355|gb|ABF28444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94489557|gb|ABF28645.1| ribonucleotide reductase large subunit [Variola virus]
 gi|94490166|gb|ABF29251.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724101|gb|ABG43227.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724305|gb|ABG43430.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724712|gb|ABG43835.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109724915|gb|ABG44037.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725119|gb|ABG44240.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725324|gb|ABG44444.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725527|gb|ABG44646.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725731|gb|ABG44849.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109725934|gb|ABG45051.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726341|gb|ABG45456.1| ribonucleotide reductase large subunit [Variola virus]
 gi|109726544|gb|ABG45658.1| ribonucleotide reductase large subunit [Variola virus]
 gi|745175|prf||2015436BP K4L gene
          Length = 771

 Score =  677 bits (1747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D    ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|448118019|ref|XP_004203399.1| Piso0_001007 [Millerozyma farinosa CBS 7064]
 gi|448120456|ref|XP_004203982.1| Piso0_001007 [Millerozyma farinosa CBS 7064]
 gi|359384267|emb|CCE78971.1| Piso0_001007 [Millerozyma farinosa CBS 7064]
 gi|359384850|emb|CCE78385.1| Piso0_001007 [Millerozyma farinosa CBS 7064]
          Length = 860

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/484 (64%), Positives = 395/484 (81%), Gaps = 6/484 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +G++F++LY KYE EG+    V A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEATGLSDVYGDEFEELYTKYEKEGRGRSTVKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT---YNFTKLKD 267
           +K+NQ+NLG IK SNLC EIVEY+S DEVAVCNLASIAL  ++   D T   YNF KL +
Sbjct: 413 KKTNQKNLGIIKSSNLCCEIVEYSSPDEVAVCNLASIALPSFVE-KDATSCWYNFEKLHE 471

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+VT+NLN+IID N+YPVE+AR SNM++RPI +GVQGLAD F+++RLPFD  E++ LN
Sbjct: 472 VTKVVTRNLNRIIDRNYYPVEQARRSNMKNRPIALGVQGLADAFMELRLPFDSQEAKELN 531

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIY+ A+E+S E+A  +GPY+TYEGSP S+G+L +D+W   PT+LWDW  LK+K+
Sbjct: 532 IQIFETIYHAAVESSVELAEIEGPYETYEGSPASKGLLSFDLWDRKPTELWDWDTLKQKM 591

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN ++LRDLV+L
Sbjct: 592 AKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYMLRDLVDL 651

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+D MK+ +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR A+IDQSQSL
Sbjct: 652 GLWNDAMKNNIIANNGSIQGLPNIPDEIKSLYKTVWEISQKHIIDMAADRAAYIDQSQSL 711

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           NI++      K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+D+   + ++A K   S
Sbjct: 712 NIHIRNPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFTVDQA--SASVAGKSVAS 769

Query: 568 QEEI 571
            E++
Sbjct: 770 LEKL 773



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 169/207 (81%), Gaps = 2/207 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
             +D+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LSFDLWDRKPTELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN ++LRDLV+LGLW+D MK+ +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYMLRDLVDLGLWNDAMKNNIIANNGSIQGLPNIPDEIKSLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR A+IDQSQSLNI++      K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAYIDQSQSLNIHIRNPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEI 975
            AIQFT+D+   + ++A K   S E++
Sbjct: 749 AAIQFTVDQA--SASVAGKSVASLEKL 773



 Score =  135 bits (340), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GLSD +G++F++LY KYE EG
Sbjct: 353 PNEATGLSDVYGDEFEELYTKYEKEG 378



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 73/97 (75%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+++RLPFD  E++ LN QIFETIY+ A+E+S E+A  +GPY+TYE
Sbjct: 501 NRPIALGVQGLADAFMELRLPFDSQEAKELNIQIFETIYHAAVESSVELAEIEGPYETYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+G+L +D+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASKGLLSFDLWDRKPTELWDWDTLKQKMAKHGLR 597



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 74/120 (61%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GV   +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYQGVNTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V ++LY  VN +TG  +PMISD+ YE+I +NAD LNSAI+YDRDFNYN+FGFK
Sbjct: 90  TTKQFSQVCKQLYEYVNPKTGLHSPMISDETYEVIQRNADELNSAIVYDRDFNYNYFGFK 149



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 37/43 (86%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           + V   KLW++IL++Q ETGTP+MLYKDACN+K+NQ+NL +I+
Sbjct: 382 STVKAQKLWYSILEAQTETGTPFMLYKDACNKKTNQKNLGIIK 424


>gi|68448942|gb|AAY97064.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449144|gb|AAY97265.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|300872688|gb|ADK39090.1| ribonucleotide reductase protein large subunit [Monkeypox virus]
 gi|451327749|gb|AGF36621.1| ribonucleotide reductase large subunit [Monkeypox virus]
 gi|451327957|gb|AGF36828.1| ribonucleotide reductase large subunit [Monkeypox virus]
 gi|451328099|gb|AGF36969.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASC++A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCKLAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|344234166|gb|EGV66036.1| ribonucleoside-diphosphate reductase large chain 1 [Candida tenuis
           ATCC 10573]
          Length = 863

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/518 (61%), Positives = 408/518 (78%), Gaps = 12/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEANGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL++ +G++F  LY+KYE E +  + + A+KLW+A+L++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLAEVYGDEFKQLYEKYERENRGRQTIKAQKLWYAVLEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            K+NQ+NLGTIK SNLC EIVEY+  +EV+VCNLASIAL  ++   + +  YNF KL D+
Sbjct: 413 LKTNQKNLGTIKSSNLCCEIVEYSDPEEVSVCNLASIALPSFVETDETSAWYNFEKLHDI 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           +K+VT+NLN+IID N+YPV EA+ SNMR+RPI +GVQGLAD F+ +RLPFD  E++ LN 
Sbjct: 473 SKVVTRNLNRIIDRNYYPVPEAKRSNMRNRPIALGVQGLADAFMALRLPFDSQEAKELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GA+EAS E+AA +G Y++Y GSP SQG+LQYD+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHGAVEASIELAATEGAYESYPGSPASQGLLQYDLWNRKPTELWDWDTLKQKMA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSN+YSRRVLSGEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNMYSRRVLSGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++MK+ +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 LWNESMKNNIISNNGSIQGLTNIPDQIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFTIDK  +A+  A+    + 
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTIDKNSIAS--ANDTVAAL 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMR 606
           E +   + +A+ + I   D        +G ADL I  R
Sbjct: 771 EMLNKRKYKAVGSAIGSAD--------EGDADLSISTR 800



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 167/195 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSN+Y
Sbjct: 569 LQYDLWNRKPTELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNMY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LL+DLV+LGLW+++MK+ +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLSGEFQIVNPYLLKDLVDLGLWNESMKNNIISNNGSIQGLTNIPDQIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFTIDK  +A+A
Sbjct: 749 AAIQFTIDKNSIASA 763



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMERVEANGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL++ +G++F  LY+KYE E
Sbjct: 353 PNEAPGLAEVYGDEFKQLYEKYERE 377



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 73/97 (75%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E++ LN QIFETIY+GA+EAS E+AA +G Y++Y 
Sbjct: 501 NRPIALGVQGLADAFMALRLPFDSQEAKELNIQIFETIYHGAVEASIELAATEGAYESYP 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQG+LQYD+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASQGLLQYDLWNRKPTELWDWDTLKQKMAKHGLR 597



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYQGVTTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V +ELY+ +N +TG  +PMISD+ Y +I K+AD LNSAI+YDRDFNYN+FGFK
Sbjct: 90  TTKQYSQVSKELYDYINPKTGKHSPMISDETYAVIQKHADELNSAIVYDRDFNYNYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+A+L++Q ETGTP+MLYKDACN K+NQ+NL  I+
Sbjct: 388 KLWYAVLEAQTETGTPFMLYKDACNLKTNQKNLGTIK 424


>gi|303273186|ref|XP_003055954.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462038|gb|EEH59330.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 816

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/527 (61%), Positives = 400/527 (75%), Gaps = 30/527 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FMRRVES+  W+LMC
Sbjct: 292 RKGAFAVYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMRRVESNGDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+DSWG +F+ LY  YE +GK  + + A++LWFAIL++Q+ETG PYML+KDACN
Sbjct: 352 PNECPGLADSWGAEFEKLYTSYEEQGKGKKTIKAQQLWFAILEAQVETGNPYMLFKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NP------------ 255
            KSNQQNLGTI+ SNLCTEIVE+TS +E AVCNLASIAL  ++   NP            
Sbjct: 412 SKSNQQNLGTIRSSNLCTEIVEFTSPEETAVCNLASIALPRFVVEENPASPTGRTEAKKL 471

Query: 256 ------ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLAD 309
                 A +T++  KL ++ + VT+NLN+IIDVN+YPVE AR SNMRHRPIG+GVQGLAD
Sbjct: 472 RGSLGAASRTFDHAKLAEITRKVTRNLNRIIDVNYYPVETARRSNMRHRPIGLGVQGLAD 531

Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369
           +FI + L FD  E++ LN +IFETIY+ AL  S  IAA DG Y+TY GSPVS+GILQ DM
Sbjct: 532 VFILLGLAFDSPEAQKLNAEIFETIYFAALTESNAIAAVDGHYETYPGSPVSKGILQPDM 591

Query: 370 WGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 426
           WGVT     D  DWAAL+ KIA  GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+R
Sbjct: 592 WGVTEMPGGDRHDWAALRAKIATSGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYAR 651

Query: 427 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
           RVLSGEF VVN HLL DL ELGLWD  +K++LI NNGS+Q ++ IP  LK +YKTVWEI 
Sbjct: 652 RVLSGEFTVVNQHLLNDLTELGLWDPKLKNELIANNGSVQGLD-IPDHLKAIYKTVWEIK 710

Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA+A
Sbjct: 711 QRVLVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADA 770

Query: 547 IQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           ++FT+D+    NA  S D   +EE      +  A + C   NK++C+
Sbjct: 771 VKFTVDQAGKGNAQKSADPDMEEE-----ARMAAKLACSLANKDECV 812



 Score =  290 bits (741), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/229 (60%), Positives = 174/229 (75%), Gaps = 9/229 (3%)

Query: 772 DMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWGVT     D  DWAAL+ KIA  GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 590 DMWGVTEMPGGDRHDWAALRAKIATSGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 649

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL ELGLWD  +K++LI NNGS+Q ++ IP  LK +YKTVWE
Sbjct: 650 ARRVLSGEFTVVNQHLLNDLTELGLWDPKLKNELIANNGSVQGLD-IPDHLKAIYKTVWE 708

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA
Sbjct: 709 IKQRVLVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAA 768

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +A++FT+D+    NA  S D   +EE      +  A + C   NK++C+
Sbjct: 769 DAVKFTVDQAGKGNAQKSADPDMEEE-----ARMAAKLACSLANKDECV 812



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FMRRVES+  W+LMC
Sbjct: 292 RKGAFAVYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMRRVESNGDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+DSWG +F+ LY  YE +G
Sbjct: 352 PNECPGLADSWGAEFEKLYTSYEEQG 377



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI + L FD  E++ LN +IFETIY+ AL  S  IAA DG Y+TY GSPVS
Sbjct: 524 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNAIAAVDGHYETYPGSPVS 583

Query: 653 QGILQYDMWGVTPT---DLWDWAALKVLALVYGLK 684
           +GILQ DMWGVT     D  DWAAL+      G++
Sbjct: 584 KGILQPDMWGVTEMPGGDRHDWAALRAKIATSGVR 618



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWFAIL++Q+ETG PYML+KDACN KSNQQNL  I
Sbjct: 387 QLWFAILEAQVETGNPYMLFKDACNSKSNQQNLGTI 422



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 38/54 (70%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++ ++  VNK  G  +P+++D  YEII  NA   ++ I+YDRDF+Y++FG+K
Sbjct: 96  ETMKVMHEHVNKRNGKWSPLLADDVYEIIKANAATFDAEIVYDRDFDYDYFGYK 149


>gi|19718013|gb|AAG37538.1| CMP70L [Camelpox virus CMS]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D+ ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDERFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADTFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AI+ ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAIIAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|37551518|gb|AAQ93170.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIKTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIKTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIKTYGLR 593



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|403170913|ref|XP_003330173.2| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|375168944|gb|EFP85754.2| ribonucleoside-diphosphate reductase large chain [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 872

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/477 (65%), Positives = 386/477 (80%), Gaps = 2/477 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FM RVE +  W L C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D +GE+F+ L+ KYE E +  + V A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 354 PAEAPGLADVYGEEFEALFAKYEKENRAKKTVKAQKLWYAILEAQTETGNPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  YI   D  Y+F KL +V K
Sbjct: 414 KKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYI--VDGKYDFNKLHEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLNKIIDVN+YPV EA+ SNMRHRPIGIGVQGLAD F  ++LPF+  E++ LN QI
Sbjct: 472 EVTYNLNKIIDVNYYPVPEAKKSNMRHRPIGIGVQGLADAFQILKLPFESPEAKKLNTQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ +LEAS E+A ++GPY+T+ GSP SQGILQ+DMW V P+DLW+W +LKEK+   
Sbjct: 532 FETLYHASLEASNELAIKEGPYETFPGSPASQGILQFDMWNVKPSDLWEWDSLKEKVKTT 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+VN  LL++LVE+GLW
Sbjct: 592 GIRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+++I + GSIQ+I  IP ++K +YKTVWEI QK +LDMAADRGAFIDQSQSLNI+
Sbjct: 652 DDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWEISQKIILDMAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           +    + +++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+DK     A A+  A +
Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDKKLQDEAKAANKAAT 768



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 166/203 (81%), Gaps = 5/203 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V P+DLW+W +LKEK+   G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 566 LQFDMWNVKPSDLWEWDSLKEKVKTTGIRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+VN  LL++LVE+GLWDD MK+++I + GSIQ+I  IP ++K +YKTVWE
Sbjct: 626 TRRVLAGEFQIVNPWLLKELVEMGLWDDEMKNRIIAHQGSIQNIPNIPTEMKAVYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +LDMAADRGAFIDQSQSLNI++    + +++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 686 ISQKIILDMAADRGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAA 745

Query: 949 NAIQFTIDK-----TKMANAMAS 966
           NAIQFT+DK      K AN  A+
Sbjct: 746 NAIQFTVDKKLQDEAKAANKAAT 768



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FM RVE +  W L C
Sbjct: 294 RPGAFAIYLEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMSRVEKNQDWPLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P    GL+D +GE+F+ L+ KYE E
Sbjct: 354 PAEAPGLADVYGEEFEALFAKYEKE 378



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  ++LPF+  E++ LN QIFET+Y+ +LEAS E+A ++GPY+T+ GSP S
Sbjct: 503 IGVQGLADAFQILKLPFESPEAKKLNTQIFETLYHASLEASNELAIKEGPYETFPGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW V P+DLW+W +LK      G++
Sbjct: 563 QGILQFDMWNVKPSDLWEWDSLKEKVKTTGIR 594



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VIE+LY  VN   G  + MIS + YE +  NA+ LNSA+IYDRDFNYN+FGFK
Sbjct: 97  QVIEDLYTYVNPINGRPSSMISQETYEAVQANAEALNSAVIYDRDFNYNYFGFK 150



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++Q ETG P+MLYKDA N+KSNQ+NL  I+
Sbjct: 385 VKAQKLWYAILEAQTETGNPFMLYKDAANKKSNQKNLGTIK 425


>gi|325558674|gb|ADZ30052.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/466 (66%), Positives = 386/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D  G++F+ LY +YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDDVCGDEFERLYTQYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D+ ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDERFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W + P+DLW+W +LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQIVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W + P+DLW+W +LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNIVPSDLWNWESLKDKIRSYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQIVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIIAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL D  G++F+ LY +YE E
Sbjct: 353 PDECPGLDDVCGDEFERLYTQYERE 377



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 76/104 (73%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W + P+DLW+W +LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNIVPSDLWNWESLKDKIRSYGLR 593



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|94489757|gb|ABF28844.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 383/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A + GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKKGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 74/104 (71%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A + 
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKK 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 96  EVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|18640305|ref|NP_570461.1| CMLV071 [Camelpox virus]
 gi|18482981|gb|AAL73778.1|AF438165_68 ribonucleotide reductase large subunit [Camelpox virus M-96]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D+ ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDERFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHYDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AI+ ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAIIAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|373447260|gb|AEY72646.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|132610|sp|P20503.1|RIR1_VACCC RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|56404829|sp|Q76RD8.1|RIR1_VACCA RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335407|gb|AAA48059.1| putative I4L [Vaccinia virus Copenhagen]
 gi|2772697|gb|AAB96436.1| ribonucleotide reductase, large subunit [Vaccinia virus]
 gi|38348940|gb|AAR17916.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|44971425|gb|AAS49775.1| RPXV062 [Rabbitpox virus]
 gi|47088393|gb|AAT10463.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|56713441|gb|AAW23481.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|56713725|gb|AAW23763.1| ribonucleoside-diphosphate reductase large subunit [Vaccinia virus]
 gi|88900691|gb|ABD57603.1| VACV069 [Vaccinia virus]
 gi|90819733|gb|ABD98543.1| VACV-DUKE-081 [Vaccinia virus]
 gi|160857955|emb|CAM58243.1| ribonucleotide reductase large subunit [Vaccinia virus Ankara]
 gi|167412562|gb|ABZ79996.1| ribonucleotide reductase large subunit [Vaccinia virus GLV-1h68]
 gi|373448450|gb|AEY73831.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|373448691|gb|AEY74071.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|373449403|gb|AEY74780.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|439965920|gb|AGB75794.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 771

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|113195253|ref|YP_717383.1| ribonucleotide reductase large subunit [Taterapox virus]
 gi|90660529|gb|ABD97642.1| ribonucleotide reductase large subunit [Taterapox virus]
          Length = 771

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  285 bits (730), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G   P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHFPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|357519755|ref|XP_003630166.1| Ribonucleoside-diphosphate reductase [Medicago truncatula]
 gi|355524188|gb|AET04642.1| Ribonucleoside-diphosphate reductase [Medicago truncatula]
          Length = 819

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/527 (61%), Positives = 400/527 (75%), Gaps = 30/527 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FLELK N GKEE RARDLFY LW+PD FM RV+S+ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLELKINHGKEEQRARDLFYALWVPDLFMERVQSNGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE++D LY +YE  GK  + V A+ LWFAIL SQIETG PYML+KDACN
Sbjct: 353 PNEAPGLADCWGEEYDKLYTQYEKAGKAKKIVQAQSLWFAILKSQIETGNPYMLFKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  Y+                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGLPVESHQSKLVGS 472

Query: 254 -NPADKTYNFTKLKDV-------AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQ 305
              + + ++F KL +V         +VT NLNKIIDVN+YPVE A  SN+RHRPIGIGVQ
Sbjct: 473 RGSSSRYFDFEKLGEVHLLLTTVTAVVTTNLNKIIDVNYYPVETAERSNLRHRPIGIGVQ 532

Query: 306 GLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL 365
           GLAD FI + + FD  E++ LNK IFETIYY AL+ SCE+AA++GPY+TY GSPVS+GIL
Sbjct: 533 GLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAKEGPYETYSGSPVSKGIL 592

Query: 366 QYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYS 425
           Q DMWGVTP++LWDW AL+E I+K GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+
Sbjct: 593 QPDMWGVTPSNLWDWGALREMISKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYN 652

Query: 426 RRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 485
           RRVLSGEF VVN HLL DL E+GLW+  +K+++I +NGS+Q++  IP +LK +YKTVWEI
Sbjct: 653 RRVLSGEFVVVNKHLLHDLTEMGLWNPALKNKIIYDNGSVQNLSEIPAELKVIYKTVWEI 712

Query: 486 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545
            QK ++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLRT+ A++
Sbjct: 713 KQKILVDMAVDRGCYIDQSQSLNIHMDKPNFGKLTSLHFYAWSKGLKTGMYYLRTRAASD 772

Query: 546 AIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDC 592
           AI+FT+D + + +    K+A  +     D +  MA M+C   N+++C
Sbjct: 773 AIKFTVDTSAIKDQPKVKEADDE-----DDDTKMAQMVCSLTNRDEC 814



 Score =  294 bits (753), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/225 (59%), Positives = 177/225 (78%), Gaps = 5/225 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP++LWDW AL+E I+K GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR
Sbjct: 595 DMWGVTPSNLWDWGALREMISKTGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRR 654

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW+  +K+++I +NGS+Q++  IP +LK +YKTVWEI Q
Sbjct: 655 VLSGEFVVVNKHLLHDLTEMGLWNPALKNKIIYDNGSVQNLSEIPAELKVIYKTVWEIKQ 714

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLRT+ A++AI
Sbjct: 715 KILVDMAVDRGCYIDQSQSLNIHMDKPNFGKLTSLHFYAWSKGLKTGMYYLRTRAASDAI 774

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           +FT+D + + +    K+   +     D +  MA M+C   N+++C
Sbjct: 775 KFTVDTSAIKDQPKVKEADDE-----DDDTKMAQMVCSLTNRDEC 814



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FLELK N GKEE RARDLFY LW+PD FM RV+S+ +WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLELKINHGKEEQRARDLFYALWVPDLFMERVQSNGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE++D LY +YE  G
Sbjct: 353 PNEAPGLADCWGEEYDKLYTQYEKAG 378



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 101/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK IFETIYY AL+ SCE+AA++GPY+TY GSPVS
Sbjct: 529 IGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKTSCELAAKEGPYETYSGSPVS 588

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVTP++LWDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 589 KGILQPDMWGVTPSNLWDWGALREMISKTGVR--NSLLVAPMPTASTSQILGNNECFEPY 646

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  N  V+   + +VNK       E G   P + +K
Sbjct: 647 TSNIYNRRVLSGEFVVVNKHLLHDLTEMGLWNPALKNK 684



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++ +YN  N  +G + P+I+D  YEII+KNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETVKVMYNHFNHRSGKKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+     A K   +V    LWFAIL SQIETG PYML+KDACNRKSNQQNL
Sbjct: 361 DCWGEEYDKLYTQYEKAGKAKKIVQAQSLWFAILKSQIETGNPYMLFKDACNRKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|94485925|gb|ABF25031.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARAVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  286 bits (731), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW++ +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNNEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 96  EVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARAVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|62288418|gb|AAX78464.1| unknown [synthetic construct]
          Length = 797

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 319 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 378

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 379 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 438

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 439 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 496

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 497 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 556

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 557 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 616

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 617 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 676

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 677 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 735

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 736 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 781



 Score =  285 bits (730), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 591 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 650

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 651 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 710 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 769

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 770 APIQFTLDKDKI 781



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 319 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 378

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 379 PDECPGLDNVWGDEFERLYTLYERE 403



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 516 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 575

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 576 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 619



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 69  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 115

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 116 TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 175



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 408 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 450


>gi|109724507|gb|ABG43631.1| ribonucleotide reductase large subunit [Variola virus]
          Length = 771

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHFDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  288 bits (736), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHFDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDEEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D    ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|66275870|ref|YP_232955.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|132611|sp|P12848.1|RIR1_VACCW RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|335666|gb|AAB59806.1| ribonucleotide reductase [Vaccinia virus]
 gi|29692179|gb|AAO89352.1| ribonucleotide reductase large subunit [Vaccinia virus WR]
 gi|325514088|gb|ADZ24082.1| ribonucleotide reductase large subunit protein [Cowpox virus]
          Length = 771

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  285 bits (730), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|302307390|ref|NP_984039.2| ADL057Wp [Ashbya gossypii ATCC 10895]
 gi|299788978|gb|AAS51863.2| ADL057Wp [Ashbya gossypii ATCC 10895]
 gi|374107252|gb|AEY96160.1| FADL057Wp [Ashbya gossypii FDAG1]
          Length = 890

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/467 (65%), Positives = 388/467 (83%), Gaps = 4/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDF++++KN GKEE RARDLF  LW+PD FMRRV+ +  W+L  
Sbjct: 293 RPGAFAIYLEPWHSDVFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD WGE+F++LY++Y  EG+  + + A+KLW+AIL++Q ETGTP++LYKDACN
Sbjct: 353 PSEAPGLSDVWGEEFEELYERYVREGRGRKTIKAQKLWYAILEAQTETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA--DKT--YNFTKLK 266
           RKSNQ+NLGTIK SNLC EIVEY+S +E AVCNLASIAL  +I  A   KT  Y+F KL 
Sbjct: 413 RKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFIAEAADGKTQWYDFDKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVE A+ SNMRHRPI +GVQGLAD F+ +R+PFD  +++ L
Sbjct: 473 EIAKVVTRNLNRVIDRNYYPVETAKRSNMRHRPIALGVQGLADAFMILRIPFDSPQAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFET+Y+ A EAS E+A  +GPY++++GSP SQGILQ+DMW   P+ +WDW ALK K
Sbjct: 533 NSQIFETLYHAACEASMELAIEEGPYESFKGSPASQGILQFDMWNHKPSGMWDWDALKAK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HG+RNSLL+APMPTAST+QILG NE FEPYTSN+YSRRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  +I +NGSIQ +  IPQ+LKDLYKTVWE+ QKT++DMAADRGAF+DQSQS
Sbjct: 653 LGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWELSQKTIIDMAADRGAFVDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LNI++      +++SMHF+GWK GLKTGMYYLRT+ A+ AIQFT+DK
Sbjct: 713 LNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTVDK 759



 Score =  292 bits (747), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 162/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P+ +WDW ALK KI +HG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 571 LQFDMWNHKPSGMWDWDALKAKIIEHGMRNSLLLAPMPTASTSQILGYNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LLRDLV+LG+WDD+MK  +I +NGSIQ +  IPQ+LKDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLRDLVDLGIWDDSMKSHIISDNGSIQGLPNIPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QKT++DMAADRGAF+DQSQSLNI++      +++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 LSQKTIIDMAADRGAFVDQSQSLNIHIRAPTMGRLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDK 957
            AIQFT+DK
Sbjct: 751 AAIQFTVDK 759



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDF++++KN GKEE RARDLF  LW+PD FMRRV+ +  W+L  
Sbjct: 293 RPGAFAIYLEPWHSDVFDFIDIRKNHGKEEIRARDLFPALWVPDLFMRRVQENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD WGE+F++LY++Y  EG
Sbjct: 353 PSEAPGLSDVWGEEFEELYERYVREG 378



 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+PFD  +++ LN QIFET+Y+ A EAS E+A  +GPY++++GSP 
Sbjct: 507 ALGVQGLADAFMILRIPFDSPQAKELNSQIFETLYHAACEASMELAIEEGPYESFKGSPA 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P+ +WDW ALK   + +G++
Sbjct: 567 SQGILQFDMWNHKPSGMWDWDALKAKIIEHGMR 599



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+ +LY+  N + G  +PMISD+ YEI+M + D LNSAI+YDRDF YN+FGFK
Sbjct: 90  TTKQFSQVVSDLYHYTNPKNGLHSPMISDEVYEIVMAHKDELNSAIVYDRDFQYNYFGFK 149



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP++LYKDACNRKSNQ+NL  I+
Sbjct: 388 KLWYAILEAQTETGTPFILYKDACNRKSNQKNLGTIK 424


>gi|256072094|ref|XP_002572372.1| ribonucleoside-diphosphate reductase alpha subunit [Schistosoma
           mansoni]
 gi|353231859|emb|CCD79214.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Schistosoma mansoni]
          Length = 837

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/530 (58%), Positives = 408/530 (76%), Gaps = 24/530 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH D+F F+E++KNTG EE RARDLF+ LWIPD FMRRVES+ +W+LM 
Sbjct: 309 RPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVESNDKWTLMD 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WGE FD LY+KYE EG+  + V A++LW+AI++ QIETG P+MLYKD+CN
Sbjct: 369 PHECPGLPEVWGEDFDTLYEKYEREGRGRQTVKAQELWYAIIECQIETGNPFMLYKDSCN 428

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN Q+LGTI+CSNLCTEIVEY+S DE AVCNLASI+L  ++N  + T++F KL++V K
Sbjct: 429 RKSNHQHLGTIRCSNLCTEIVEYSSPDETAVCNLASISLGKFVNRDNLTFDFAKLQEVTK 488

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+IDV FYPVEEAR SNMRHRPIGIGVQGLAD F  +R PFD  E+  LNK+I
Sbjct: 489 VVTRNLNKVIDVTFYPVEEARRSNMRHRPIGIGVQGLADAFCLLRYPFDSPEAADLNKRI 548

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-----WDWAALKE 385
           FET+Y+ +L+ASC++A   G Y++Y+GSPVS+GILQ DMWGV   +L      DW+ L+ 
Sbjct: 549 FETMYFASLDASCQLAVDQGTYESYQGSPVSKGILQPDMWGVDTEELSKVSGLDWSGLRA 608

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I K+G+RNSLL+APMPTAST+QILGNNES EP+TSN++SRRVLSGEFQ+VN +LL DL 
Sbjct: 609 RINKYGLRNSLLLAPMPTASTSQILGNNESTEPFTSNVFSRRVLSGEFQIVNPYLLDDLT 668

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +L LW + +K  +++N GSIQ I+GIP++LK LYKTVWEI QK ++DMAA R  FIDQSQ
Sbjct: 669 KLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYKTVWEISQKKIIDMAAGRAPFIDQSQ 728

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN+++A+ NY K++SMHF+ W+ GLKTGMYYLRT+PAA+ I+F++DKT +   +     
Sbjct: 729 SLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRTRPAADPIKFSVDKT-ILRVLTDSTT 787

Query: 566 RSQEEIQAD------------------QEQAMAAMICRRDNKEDCIGVQG 597
           ++ E    D                  Q++ + ++ C  +N E C+  QG
Sbjct: 788 KTNEPQNNDSIDQTVEAIEELRIIEEIQKRNLDSIACSLNNPEGCLSCQG 837



 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 130/249 (52%), Positives = 177/249 (71%), Gaps = 24/249 (9%)

Query: 772 DMWGVTPTDL-----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
           DMWGV   +L      DW+ L+ +I K+G+RNSLL+APMPTAST+QILGNNES EP+TSN
Sbjct: 586 DMWGVDTEELSKVSGLDWSGLRARINKYGLRNSLLLAPMPTASTSQILGNNESTEPFTSN 645

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           ++SRRVLSGEFQ+VN +LL DL +L LW + +K  +++N GSIQ I+GIP++LK LYKTV
Sbjct: 646 VFSRRVLSGEFQIVNPYLLDDLTKLELWSEELKTAIVLNQGSIQHIDGIPKELKPLYKTV 705

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEI QK ++DMAA R  FIDQSQSLN+++A+ NY K++SMHF+ W+ GLKTGMYYLRT+P
Sbjct: 706 WEISQKKIIDMAAGRAPFIDQSQSLNLHLAQPNYGKITSMHFYAWRKGLKTGMYYLRTRP 765

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQAD------------------QEQAMAAMIC 988
           AA+ I+F++DKT +   +    T++ E    D                  Q++ + ++ C
Sbjct: 766 AADPIKFSVDKT-ILRVLTDSTTKTNEPQNNDSIDQTVEAIEELRIIEEIQKRNLDSIAC 824

Query: 989 RRDNKEDCL 997
             +N E CL
Sbjct: 825 SLNNPEGCL 833



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH D+F F+E++KNTG EE RARDLF+ LWIPD FMRRVES+ +W+LM 
Sbjct: 309 RPGAFAMYLEPWHPDVFQFIEMRKNTGAEEIRARDLFFALWIPDLFMRRVESNDKWTLMD 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WGE FD LY+KYE EG
Sbjct: 369 PHECPGLPEVWGEDFDTLYEKYEREG 394



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 5/97 (5%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  +R PFD  E+  LNK+IFET+Y+ +L+ASC++A   G Y++Y+GSPVS
Sbjct: 520 IGVQGLADAFCLLRYPFDSPEAADLNKRIFETMYFASLDASCQLAVDQGTYESYQGSPVS 579

Query: 653 QGILQYDMWGVTPTDL-----WDWAALKVLALVYGLK 684
           +GILQ DMWGV   +L      DW+ L+     YGL+
Sbjct: 580 KGILQPDMWGVDTEELSKVSGLDWSGLRARINKYGLR 616



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L + AA    +++      +AIL +++       L+K+  +R S     +V+E+
Sbjct: 66  GVTTVELDNLAAETCASMITKHH-EYAILAARLAVSN---LHKETKSRFS-----DVVED 116

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N  T   +P++S    + + +NA RLN AI Y RD+ YN+FGFK
Sbjct: 117 LYCYINPRTKKHSPLVSKSLRDFVRENAGRLNDAIDYQRDYTYNYFGFK 165



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LW+AI++ QIETG P+MLYKD+CNRKSN Q+L  I
Sbjct: 400 VKAQELWYAIIECQIETGNPFMLYKDSCNRKSNHQHLGTI 439


>gi|448513340|ref|XP_003866926.1| Rnr1 large subunit of ribonucleotide reductase [Candida
           orthopsilosis Co 90-125]
 gi|380351264|emb|CCG21488.1| Rnr1 large subunit of ribonucleotide reductase [Candida
           orthopsilosis Co 90-125]
          Length = 866

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/465 (66%), Positives = 384/465 (82%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D++G++F +LY+KYE EG+  + + A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLADTYGDEFVELYEKYEREGRGRKTIKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++    K   YNF KL DV
Sbjct: 413 TKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEQDGKHAWYNFDKLHDV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N+YPV EA  SNMRHRPI +GVQGLAD F+ +R+ FD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIGFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +GPY+TY+GSP SQG+LQYD+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHAAVEASIELAQEEGPYETYQGSPASQGLLQYDLWDRKPTELWDWDELKKKLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMA+DR AFIDQSQSLN
Sbjct: 653 IWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHIIDMASDRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 757



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQYDLWDRKPTELWDWDELKKKLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMA+DR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 749 AAIQFTIDK 757



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGEWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D++G++F +LY+KYE EG
Sbjct: 353 PNEAPGLADTYGDEFVELYEKYEREG 378



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+ FD  E+R LN QIFETIY+ A+EAS E+A  +GPY+TY+GSP 
Sbjct: 505 ALGVQGLADAFMVLRIGFDSQEARELNIQIFETIYHAAVEASIELAQEEGPYETYQGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQYD+W   PT+LWDW  LK     +G++
Sbjct: 565 SQGLLQYDLWDRKPTELWDWDELKKKLAKHGMR 597



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V ++LY  +N ET    PMIS + Y+II +NAD LNSAI+YDRDFNYN+FGFK
Sbjct: 96  QVSKDLYEYINPETNLHAPMISKETYDIIQENADELNSAIVYDRDFNYNYFGFK 149



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+MLYKDACN KSNQ+NL +I+
Sbjct: 388 KLWYSILEAQTETGTPFMLYKDACNTKSNQKNLGIIK 424


>gi|6969720|gb|AAF33932.1| TI4L [Vaccinia virus Tian Tan]
          Length = 771

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 383/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GFRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  285 bits (729), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 164/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGFRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 74/104 (71%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YG +
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGFR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|343084826|ref|YP_004774121.1| ribonucleoside-diphosphate reductase subunit alpha [Cyclobacterium
           marinum DSM 745]
 gi|342353360|gb|AEL25890.1| ribonucleoside-diphosphate reductase, alpha subunit [Cyclobacterium
           marinum DSM 745]
          Length = 798

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/510 (60%), Positives = 406/510 (79%), Gaps = 17/510 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI DFL+LKKN GK+E RARDLFY +W+ D FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLDLKKNHGKDELRARDLFYAVWVSDLFMKRVEANEEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D  GE+F+ LY+KYE EG+    + A++LWF IL+SQIETGTPY+LYKDA N
Sbjct: 353 PHEAPGLADCHGEEFERLYEKYEKEGRARETIKAQELWFEILESQIETGTPYILYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD---KTYNFTKLKD 267
            KSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLAS+AL  +++      K ++  KL +
Sbjct: 413 GKSNQKNLGTIKSSNLCTEIMEYTSPDEVAVCNLASLALPKFVSTGKDGKKHFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K+VTKNLNK+IDVN+YPV EAR SN RHRP+G+G+QGLAD FI +R+PFD  E++ LN
Sbjct: 473 VTKVVTKNLNKVIDVNYYPVPEARKSNFRHRPVGLGIQGLADTFILLRMPFDSEEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIY+ ++E S E+A  +G Y+TYEGSPVS+G+ Q+DMWGVTP +  W+W  LKEK
Sbjct: 533 EDIFETIYFASMETSMELAKINGTYETYEGSPVSKGLFQFDMWGVTPKSGRWNWTGLKEK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+GVRNSLL+APMPTAST+QILGNNE FEPYT+NIY+RR LSGEF VVN HL++DL+ 
Sbjct: 593 VNKYGVRNSLLVAPMPTASTSQILGNNECFEPYTTNIYTRRTLSGEFVVVNKHLMKDLIR 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW D MK++LI +NGS+QD+  IPQ LKDLYKTVWEI QK ++DMAADRGA++ QSQS
Sbjct: 653 LGLWTDGMKNRLIASNGSVQDMPDIPQNLKDLYKTVWEISQKVIIDMAADRGAYVCQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN----AMAS 562
           +N+++ E N+ K++SMHF+ WK GLKTG+YYLR+K A++AI+FT+DK+++ +    A+  
Sbjct: 713 MNLFLQEPNFGKLTSMHFYAWKKGLKTGIYYLRSKAASSAIKFTVDKSQLNDDKQTAIDD 772

Query: 563 KDARSQEEIQADQEQAMAAMICRRDNKEDC 592
            +AR Q++          A++C  DN ++C
Sbjct: 773 AEARKQQQ---------DAIVCSLDNPDEC 793



 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  W+W  LKEK+ K+GVRNSLL+APMPTAST+QILGNNE FEPYT+NI
Sbjct: 570 FQFDMWGVTPKSGRWNWTGLKEKVNKYGVRNSLLVAPMPTASTSQILGNNECFEPYTTNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL+ LGLW D MK++LI +NGS+QD+  IPQ LKDLYKTVW
Sbjct: 630 YTRRTLSGEFVVVNKHLMKDLIRLGLWTDGMKNRLIASNGSVQDMPDIPQNLKDLYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRGA++ QSQS+N+++ E N+ K++SMHF+ WK GLKTG+YYLR+K A
Sbjct: 690 EISQKVIIDMAADRGAYVCQSQSMNLFLQEPNFGKLTSMHFYAWKKGLKTGIYYLRSKAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           ++AI+FT+DK+++ +     D ++  +    ++Q   A++C  DN ++C
Sbjct: 750 SSAIKFTVDKSQLND-----DKQTAIDDAEARKQQQDAIVCSLDNPDEC 793



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI DFL+LKKN GK+E RARDLFY +W+ D FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLDLKKNHGKDELRARDLFYAVWVSDLFMKRVEANEEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D  GE+F+ LY+KYE EG
Sbjct: 353 PHEAPGLADCHGEEFERLYEKYEKEG 378



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +R+PFD  E++ LN+ IFETIY+ ++E S E+A  +G Y+TYEGSPVS
Sbjct: 507 LGIQGLADTFILLRMPFDSEEAKGLNEDIFETIYFASMETSMELAKINGTYETYEGSPVS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G+ Q+DMWGVTP +  W+W  LK     YG++
Sbjct: 567 KGLFQFDMWGVTPKSGRWNWTGLKEKVNKYGVR 599



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQIETGTPY+LYKDA N KSNQ+NL  I+
Sbjct: 388 ELWFEILESQIETGTPYILYKDAANGKSNQKNLGTIK 424



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT T+L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTTELDNLAA-EVCASLTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +T     +I+   Y I+ K+A +L+  I Y RDF+Y+FFGFK
Sbjct: 101 LYTYINPKTDENAALIAPDVYGIVKKHAAKLDQVIDYSRDFDYDFFGFK 149


>gi|409042060|gb|EKM51544.1| hypothetical protein PHACADRAFT_261748 [Phanerochaete carnosa
           HHB-10118-sp]
          Length = 810

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/469 (67%), Positives = 388/469 (82%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+F++L+KN GKEE RARDLFY LWIPD FM+RVE++ +W+L C
Sbjct: 227 RPGAFAIYLEPWHADIFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGKWTLFC 286

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WG +F++LY++YE EG+  + + A+KLW+A+L++QIETG P+MLYKD+ N
Sbjct: 287 PNEAPGLHEVWGAEFEELYERYEREGRGRKTIEAQKLWYAVLEAQIETGGPFMLYKDSAN 346

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY++ DE AVCNLASIAL  YI   +  YNF KL D+ K
Sbjct: 347 AKSNQQNLGTIKSSNLCTEIIEYSAPDETAVCNLASIALPSYIE--NGQYNFQKLHDITK 404

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YP  EAR SNMRHRPIG+GV GLAD F+ +R+PFD  E+R LNKQI
Sbjct: 405 VVVYNLNRIIDVNYYPTPEARRSNMRHRPIGVGVNGLADAFMALRMPFDSPEARQLNKQI 464

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+EAS +IA RDGPY+TYEGSP S G LQYD+WGVTP+DLWDWA++K K+A+ 
Sbjct: 465 FETIYHAAVEASSDIAERDGPYETYEGSPASMGQLQYDLWGVTPSDLWDWASVKVKVART 524

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQ+V   LLR+LV+L LW
Sbjct: 525 GLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQIVCPWLLRELVDLKLW 584

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD MK+ +I NNGSIQ I GIP  +K +YKTVWEI QK VLD+AADRGAFI QSQSLN++
Sbjct: 585 DDTMKNMIIANNGSIQSIIGIPDDIKAIYKTVWEISQKKVLDLAADRGAFICQSQSLNVH 644

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +      +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +  A
Sbjct: 645 LQSPTVGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSILKEA 693



 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 164/195 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTP+DLWDWA++K K+A+ G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 499 LQYDLWGVTPSDLWDWASVKVKVARTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 558

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+V   LLR+LV+L LWDD MK+ +I NNGSIQ I GIP  +K +YKTVWE
Sbjct: 559 TRRVLAGEFQIVCPWLLRELVDLKLWDDTMKNMIIANNGSIQSIIGIPDDIKAIYKTVWE 618

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLD+AADRGAFI QSQSLN+++      +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 619 ISQKKVLDLAADRGAFICQSQSLNVHLQSPTVGQLTSMHFYGWKKGLKTGMYYLRTRPAA 678

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+D++ +  A
Sbjct: 679 QAIQFTVDQSILKEA 693



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD F+ +R+PFD  E+R LNKQIFETIY+ A+EAS +IA RDGPY+TYEGSP S
Sbjct: 436 VGVNGLADAFMALRMPFDSPEARQLNKQIFETIYHAAVEASSDIAERDGPYETYEGSPAS 495

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQYD+WGVTP+DLWDWA++KV     GL+
Sbjct: 496 MGQLQYDLWGVTPSDLWDWASVKVKVARTGLR 527



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 62/75 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+F++L+KN GKEE RARDLFY LWIPD FM+RVE++ +W+L C
Sbjct: 227 RPGAFAIYLEPWHADIFEFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEANGKWTLFC 286

Query: 61  PNACRGLSDSWGEKF 75
           PN   GL + WG +F
Sbjct: 287 PNEAPGLHEVWGAEF 301



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           VI++LY  VN + G    MI+   YEI+  NA+RL+SA+IY RDF+YNFFGFK
Sbjct: 31  VIKDLYEYVNPKNGRPASMIAKDVYEIVTANAERLDSAVIYSRDFSYNFFGFK 83



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+A+L++QIETG P+MLYKD+ N KSNQQNL  I+
Sbjct: 322 KLWYAVLEAQIETGGPFMLYKDSANAKSNQQNLGTIK 358


>gi|194377960|dbj|BAG63343.1| unnamed protein product [Homo sapiens]
          Length = 454

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/457 (69%), Positives = 379/457 (82%), Gaps = 7/457 (1%)

Query: 137 MRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQI 196
           M+RVE++  WSLMCPN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ 
Sbjct: 1   MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQT 60

Query: 197 ETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA 256
           ETGTPYMLYKD+CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  +
Sbjct: 61  ETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-S 119

Query: 257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL 316
           + TY+F KL +V K+V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR 
Sbjct: 120 EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRY 179

Query: 317 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 376
           PF+  E++LLNKQIFETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTD
Sbjct: 180 PFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTD 239

Query: 377 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
           LWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+V
Sbjct: 240 LWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIV 299

Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
           N HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+
Sbjct: 300 NPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAE 359

Query: 497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K ++
Sbjct: 360 RGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKERL 419

Query: 557 ANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
            +         +      +E+  AAM+C  +N+++C+
Sbjct: 420 KDKEKVSKEEEE------KERNTAAMVCSLENRDECL 450



 Score =  325 bits (834), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 155/229 (67%), Positives = 184/229 (80%), Gaps = 6/229 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 228 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 287

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 288 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 347

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 348 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 407

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K ++ +         +      +E+  AAM+C  +N+++CL
Sbjct: 408 NPIQFTLNKERLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 450



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 81/104 (77%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 153 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 212

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK     YG++
Sbjct: 213 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 256



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 38/46 (82%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+
Sbjct: 41  RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 86



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 47 MRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLV 88
          M+RVE++  WSLMCPN C GL + WGE+F+ LY  YE +G V
Sbjct: 1  MKRVETNQDWSLMCPNECPGLDEVWGEEFEKLYASYEKQGRV 42


>gi|404450557|ref|ZP_11015538.1| ribonucleoside-diphosphate reductase subunit alpha [Indibacter
           alkaliphilus LW1]
 gi|403763777|gb|EJZ24720.1| ribonucleoside-diphosphate reductase subunit alpha [Indibacter
           alkaliphilus LW1]
          Length = 800

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/506 (61%), Positives = 396/506 (78%), Gaps = 7/506 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI DFLELK+N GKEE RARDLFY +WIPD FM+RVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNEDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D   E+F+ LY+KYE EG+    + A++LWF IL+SQIETGTPYMLYKD+ N
Sbjct: 353 PNEAPGLGDCHSEEFEKLYEKYEREGRARETIKAQELWFEILESQIETGTPYMLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA---DKTYNFTKLKD 267
           +KSNQQNLGTIK SNLCTEI+EYT+ DEVAVCNLASIAL  ++       K ++  KL +
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVKTGPDGKKFFDHKKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+ T+NLNK+IDVN+YPVEEAR SN RHRPIG+GVQGLAD FI +R+PF+  E++ LN
Sbjct: 473 ITKVATRNLNKVIDVNYYPVEEARRSNFRHRPIGLGVQGLADTFISLRMPFESEEAKGLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + IFETIY+ ++E S E+A   G Y+TYEGSP S+G LQ+DMWGVTP +  W+W  LK +
Sbjct: 533 EDIFETIYFASVETSMELAKVQGTYETYEGSPASKGQLQFDMWGVTPKSGRWEWDGLKAQ 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RR LSGEF VVN HL++DL+ 
Sbjct: 593 VKKYGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRTLSGEFIVVNKHLMKDLIR 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+DNMK++LI  NGS+Q I  IPQ +KD+YKTVWEI Q+ V+DMAADRGA+I QSQS
Sbjct: 653 LGLWNDNMKNRLIAANGSVQAIPNIPQNIKDIYKTVWEISQRVVIDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +N++M + N+ K++SMHF+ WK GLKTGMYYLR++ A +AIQFT+DK+ +     +  A 
Sbjct: 713 MNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAATSAIQFTVDKSALEADKITDAAA 772

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDC 592
           + E  ++ ++ A+A   C  D+ E C
Sbjct: 773 AHESNKSQKQDAIA---CSLDDPEGC 795



 Score =  296 bits (757), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 179/229 (78%), Gaps = 4/229 (1%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP +  W+W  LK ++ K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 570 LQFDMWGVTPKSGRWEWDGLKAQVKKYGLRNSLLVAPMPTASTSQILGNNECFEPYTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RR LSGEF VVN HL++DL+ LGLW+DNMK++LI  NGS+Q I  IPQ +KD+YKTVW
Sbjct: 630 YTRRTLSGEFIVVNKHLMKDLIRLGLWNDNMKNRLIAANGSVQAIPNIPQNIKDIYKTVW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ V+DMAADRGA+I QSQS+N++M + N+ K++SMHF+ WK GLKTGMYYLR++ A
Sbjct: 690 EISQRVVIDMAADRGAYICQSQSMNVFMQDPNFGKLTSMHFYAWKKGLKTGMYYLRSQAA 749

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            +AIQFT+DK+ +    A K T +    ++++ Q   A+ C  D+ E C
Sbjct: 750 TSAIQFTVDKSALE---ADKITDAAAAHESNKSQKQDAIACSLDDPEGC 795



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI DFLELK+N GKEE RARDLFY +WIPD FM+RVE +  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIKDFLELKRNHGKEEMRARDLFYAMWIPDLFMKRVEQNEDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL D   E+F+ LY+KYE EG
Sbjct: 353 PNEAPGLGDCHSEEFEKLYEKYEREG 378



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+  E++ LN+ IFETIY+ ++E S E+A   G Y+TYEGSP S
Sbjct: 507 LGVQGLADTFISLRMPFESEEAKGLNEDIFETIYFASVETSMELAKVQGTYETYEGSPAS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G LQ+DMWGVTP +  W+W  LK     YGL+
Sbjct: 567 KGQLQFDMWGVTPKSGRWEWDGLKAQVKKYGLR 599



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWF IL+SQIETGTPYMLYKD+ N+KSNQQNL  I+
Sbjct: 388 ELWFEILESQIETGTPYMLYKDSANKKSNQQNLGTIK 424



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +AIL ++I       L+K      SN      ++ 
Sbjct: 50  GVTTSELDNLAA-EVCASLTVKHPDYAILAARIAISN---LHKTTSQSFSN-----TMKR 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  +N +TG    +I+   Y I+ K+A R + AI Y RDF+Y++FGFK
Sbjct: 101 LYTYINPKTGENAALIAPDVYGIVKKHAARFDEAIDYTRDFDYDYFGFK 149


>gi|159485006|ref|XP_001700540.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
 gi|158272180|gb|EDO97984.1| ribonucleoside-diphosphate reductase large subunit [Chlamydomonas
           reinhardtii]
          Length = 878

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/488 (63%), Positives = 390/488 (79%), Gaps = 22/488 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFYGLWIPD FM RVE+D +WSL C
Sbjct: 296 RKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEWSLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY KYE EG+  R V A++LWFAIL++Q+ETG PYMLYKD CN
Sbjct: 356 PNEAPGLADCWGEEFERLYLKYEQEGRSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIKCSNLCTEI+EYTS DE+AVCNLASIAL  ++                 
Sbjct: 416 RKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPGWESKKLVGS 475

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            + A++ ++F KL ++ K+VT+NLNKIIDVN+YP  +A+ SNMRHRPIG+GVQGLAD FI
Sbjct: 476 LDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFI 535

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E+  LN+QIFE +Y+ AL  SCE+A RDGPY+TY GSPVSQG+LQ DMWGV
Sbjct: 536 LLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQGVLQPDMWGV 595

Query: 373 TPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL 429
            PT +    +W  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL
Sbjct: 596 KPTGVDGRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVL 655

Query: 430 SGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKT 489
           SGEF VVN HLL DL  +G+W  ++K++L+  NGS+ ++E IP++LK LYKTVWEI Q+T
Sbjct: 656 SGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRT 714

Query: 490 VLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549
           ++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA+AI+F
Sbjct: 715 LVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKF 774

Query: 550 TIDKTKMA 557
           T+D+  ++
Sbjct: 775 TVDQQALS 782



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 164/203 (80%), Gaps = 4/203 (1%)

Query: 772 DMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWGV PT +    +W  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 591 DMWGVKPTGVDGRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 650

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF VVN HLL DL  +G+W  ++K++L+  NGS+ ++E IP++LK LYKTVWE
Sbjct: 651 VRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLELE-IPEELKGLYKTVWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA
Sbjct: 710 IKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAA 769

Query: 949 NAIQFTIDKTKMANAMASKDTRS 971
           +AI+FT+D+  ++    ++ T +
Sbjct: 770 DAIKFTVDQQALSKKKTTQGTSA 792



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + + FD  E+  LN+QIFE +Y+ AL  SCE+A RDGPY+TY GSPVS
Sbjct: 525 LGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVS 584

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG+LQ DMWGV PT +    +W  L+     +G++
Sbjct: 585 QGVLQPDMWGVKPTGVDGRCNWEELRNRIAQHGVR 619



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LWFAIL++Q+ETG PYMLYKD CNRKSNQQNL  I+
Sbjct: 386 VVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIK 427



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +++LY   N   G    +I+   Y+II++NA RL+S I YDRDF+Y++FGFK
Sbjct: 99  KTMDKLYTYRNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFK 152


>gi|52000447|dbj|BAD44751.1| NSG5 protein [Chlamydomonas reinhardtii]
          Length = 878

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/488 (63%), Positives = 390/488 (79%), Gaps = 22/488 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIY+EPWH D+FDFL+L+KN GKEE RARDLFYGLWIPD FM RVE+D +WSL C
Sbjct: 296 RKGAFAIYMEPWHADVFDFLDLRKNHGKEEARARDLFYGLWIPDLFMERVEADKEWSLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY KYE EG+  R V A++LWFAIL++Q+ETG PYMLYKD CN
Sbjct: 356 PNEAPGLADCWGEEFERLYLKYEQEGRSRRVVRAQQLWFAILEAQVETGNPYMLYKDHCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIKCSNLCTEI+EYTS DE+AVCNLASIAL  ++                 
Sbjct: 416 RKSNQQNLGTIKCSNLCTEIIEYTSPDEIAVCNLASIALPRFVRERGSQPGWESKKLVGS 475

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            + A++ ++F KL ++ K+VT+NLNKIIDVN+YP  +A+ SNMRHRPIG+GVQGLAD FI
Sbjct: 476 LDAANRFFDFEKLAEMTKMVTRNLNKIIDVNYYPHPKAQRSNMRHRPIGLGVQGLADTFI 535

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E+  LN+QIFE +Y+ AL  SCE+A RDGPY+TY GSPVSQG+LQ DMWGV
Sbjct: 536 LLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVSQGVLQPDMWGV 595

Query: 373 TPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL 429
            PT +    +W  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL
Sbjct: 596 KPTGVDGRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVL 655

Query: 430 SGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKT 489
           SGEF VVN HLL DL  +G+W  ++K++L+  NGS+ ++E IP++LK LYKTVWEI Q+T
Sbjct: 656 SGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLELE-IPEELKGLYKTVWEIKQRT 714

Query: 490 VLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549
           ++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA+AI+F
Sbjct: 715 LVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAADAIKF 774

Query: 550 TIDKTKMA 557
           T+D+  ++
Sbjct: 775 TVDQQALS 782



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/203 (60%), Positives = 164/203 (80%), Gaps = 4/203 (1%)

Query: 772 DMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWGV PT +    +W  L+ +IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 591 DMWGVKPTGVDGRCNWEELRNRIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 650

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF VVN HLL DL  +G+W  ++K++L+  NGS+ ++E IP++LK LYKTVWE
Sbjct: 651 VRRVLSGEFTVVNQHLLHDLNRMGIWSADLKNELVAANGSVLELE-IPEELKGLYKTVWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+IDQSQS N++M + N+ K++S+HF+ W+ GLKTGMYYLRTK AA
Sbjct: 710 IKQRTLVDMAADRGAYIDQSQSFNVFMPDPNFGKLTSLHFYAWRKGLKTGMYYLRTKAAA 769

Query: 949 NAIQFTIDKTKMANAMASKDTRS 971
           +AI+FT+D+  ++    ++ T +
Sbjct: 770 DAIKFTVDQQALSKKKTTQGTSA 792



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + + FD  E+  LN+QIFE +Y+ AL  SCE+A RDGPY+TY GSPVS
Sbjct: 525 LGVQGLADTFILLGMAFDSPEAAELNRQIFEVVYHAALSTSCELAERDGPYETYAGSPVS 584

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG+LQ DMWGV PT +    +W  L+     +G++
Sbjct: 585 QGVLQPDMWGVKPTGVDGRCNWEELRNRIAQHGVR 619



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   +LWFAIL++Q+ETG PYMLYKD CNRKSNQQNL  I+
Sbjct: 386 VVRAQQLWFAILEAQVETGNPYMLYKDHCNRKSNQQNLGTIK 427



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +++LY   N   G    +I+   Y+II++NA RL+S I YDRDF+Y++FGFK
Sbjct: 99  KTMDKLYTYRNPRNGEEAALIAKDVYDIIVQNAQRLDSEIRYDRDFDYDYFGFK 152


>gi|307103606|gb|EFN51865.1| hypothetical protein CHLNCDRAFT_32953 [Chlorella variabilis]
          Length = 810

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/524 (59%), Positives = 402/524 (76%), Gaps = 23/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+Y EPWH DIFD+L+L+KN GKEE RARDLFY LWIPD FM RVE++ +WSL C
Sbjct: 293 RKGAFAMYCEPWHADIFDWLDLRKNHGKEEARARDLFYALWIPDLFMHRVEANGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EG+  + + A++LWFAIL++Q+ETG P+MLYKD+ N
Sbjct: 353 PNESPGLADCWGEEFEALYSRYEREGRARKVIKAQQLWFAILEAQVETGNPFMLYKDSAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----------- 259
           RKSNQQNLGTIK SNLCTEI+EY+S +E AVCNLAS+AL  ++   + +           
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYSSPEETAVCNLASVALPRFVREKEPSGREGKKLVGSL 472

Query: 260 ------YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQ 313
                 ++F KL +V  + T+NLNKIIDVN+YPVE AR SNMRHRPIG+GVQGLAD F+ 
Sbjct: 473 DAEGRYFDFDKLAEVTAVATRNLNKIIDVNYYPVETARRSNMRHRPIGLGVQGLADTFLL 532

Query: 314 MRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT 373
           + LPFD  E+  LN+QIFETIY+ AL  S +++  +GPY TYEGSPVS+GILQ DMWGV 
Sbjct: 533 LGLPFDSPEAAELNRQIFETIYFAALRTSMQLSKAEGPYSTYEGSPVSKGILQPDMWGVK 592

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
           P+D WDW  L+  IA++GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVLSGEF
Sbjct: 593 PSDRWDWDGLRRDIAQNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEF 652

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HLL DL  LGLWD ++K++++  +GS+ D++ IP  LK+LYKTVWEI Q+ ++DM
Sbjct: 653 VVVNQHLLHDLTRLGLWDTDVKNEIVAASGSVADLD-IPNNLKELYKTVWEIKQRVLVDM 711

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AADRGAFIDQSQS N++M++ N+ K++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D+
Sbjct: 712 AADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKKGLKTGMYYLRSRAAADAIKFTVDQ 771

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
             +      K  R  +E +A  +  MAAM+C  +NK+ C+   G
Sbjct: 772 QALQR---RKSERLAKENKATSD--MAAMVCSLENKDACVMCSG 810



 Score =  292 bits (747), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 135/226 (59%), Positives = 178/226 (78%), Gaps = 6/226 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGV P+D WDW  L+  IA++GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RR
Sbjct: 587 DMWGVKPSDRWDWDGLRRDIAQNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRR 646

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL  LGLWD ++K++++  +GS+ D++ IP  LK+LYKTVWEI Q
Sbjct: 647 VLSGEFVVVNQHLLHDLTRLGLWDTDVKNEIVAASGSVADLD-IPNNLKELYKTVWEIKQ 705

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAADRGAFIDQSQS N++M++ N+ K++S+HF+ WK GLKTGMYYLR++ AA+AI
Sbjct: 706 RVLVDMAADRGAFIDQSQSFNVHMSDPNFGKLTSLHFYAWKKGLKTGMYYLRSRAAADAI 765

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D+  +      K  R  +E +A  +  MAAM+C  +NK+ C+
Sbjct: 766 KFTVDQQALQR---RKSERLAKENKATSD--MAAMVCSLENKDACV 806



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+Y EPWH DIFD+L+L+KN GKEE RARDLFY LWIPD FM RVE++ +WSL C
Sbjct: 293 RKGAFAMYCEPWHADIFDWLDLRKNHGKEEARARDLFYALWIPDLFMHRVEANGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNESPGLADCWGEEFEALYSRYEREG 378



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 64/83 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ + LPFD  E+  LN+QIFETIY+ AL  S +++  +GPY TYEGSPVS
Sbjct: 521 LGVQGLADTFLLLGLPFDSPEAAELNRQIFETIYFAALRTSMQLSKAEGPYSTYEGSPVS 580

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQ DMWGV P+D WDW  L+
Sbjct: 581 KGILQPDMWGVKPSDRWDWDGLR 603



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q +      GVT ++L D  A +  A +      +A+L ++I       L+K+     
Sbjct: 39  VAQKVTTGVYKGVTTSEL-DELAAETAASLTATHPDYALLAARIAVSN---LHKNTLKSF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     E ++ +++ VN + G + P+I +K YEIIM++A+RL+S I+YDRDF+Y++FGFK
Sbjct: 95  S-----ETVKLMFSHVNPKNGEKAPLIDEKVYEIIMEHAERLDSEIVYDRDFDYDYFGFK 149



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   +LWFAIL++Q+ETG P+MLYKD+ NRKSNQQNL  I+
Sbjct: 383 VIKAQQLWFAILEAQVETGNPFMLYKDSANRKSNQQNLGTIK 424


>gi|88854118|gb|ABD52536.1| ribonucleotide reductase large subunit M1 [Vaccinia virus]
          Length = 771

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P++LW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSNLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 128/192 (66%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P++LW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSNLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P++LW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSNLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|323098474|gb|ADX22712.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRT PA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKDKI 755



 Score =  285 bits (729), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRT PA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASC++A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCKLAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTYGLR 593



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+F FK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|168022742|ref|XP_001763898.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684903|gb|EDQ71302.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 811

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/521 (60%), Positives = 404/521 (77%), Gaps = 24/521 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF++L+L+KN GKEE RARDLFYGLWIPD FM+RV+++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEWLDLRKNHGKEESRARDLFYGLWIPDLFMQRVQNNGTWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EG+  + V A+KLWFA+L++QIETG PY+L+KDACN
Sbjct: 353 PNEAPGLADCWGEQFETLYARYELEGRAKKVVQAQKLWFAVLEAQIETGNPYILFKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEIVE+TS DE AVCNLAS+AL  ++         +P      
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIVEFTSPDETAVCNLASLALPRFVREKGVSLESHPTKIIGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL ++  +VT+NLN+IIDVN+YPVE AR SNMRHRPIG+GVQGLAD FI
Sbjct: 473 NGHENRFFDFNKLGEITSLVTRNLNRIIDVNYYPVETARRSNMRHRPIGLGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LN+ IFETIYY AL+ SCE+AA +G Y+TY GSP+S+G LQ DMW V
Sbjct: 533 LLGMPFDSEEAQQLNRDIFETIYYHALKTSCELAAEEGVYETYAGSPISKGALQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+  WDW +L++ I  +GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 KPSTRWDWDSLRQMILNNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL  +GLW  ++K+Q+I +NGSIQ I+ IP  LK +Y+TVWEI Q++++D
Sbjct: 653 FVVVNKHLLNDLTNMGLWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQRSIVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAA RGAFIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           ++ +      K       +  + E+ M+ M+C  +NK++C+
Sbjct: 773 QSSI------KQETPAAVVSNNLEEKMSQMVCSLENKDECM 807



 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 174/226 (76%), Gaps = 6/226 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+  WDW +L++ I  +GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVKPSTRWDWDSLRQMILNNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL  +GLW  ++K+Q+I +NGSIQ I+ IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLNDLTNMGLWTHDLKNQVIYHNGSIQQIDVIPDDLKKIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           ++++DMAA RGAFIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 RSIVDMAAARGAFIDQSQSLNIHMDQPNFGKLTSLHFYTWTKGLKTGMYYLRSRAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D++ +      K       +  + E+ M+ M+C  +NK++C+
Sbjct: 768 KFTVDQSSI------KQETPAAVVSNNLEEKMSQMVCSLENKDECM 807



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF++L+L+KN GKEE RARDLFYGLWIPD FM+RV+++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEWLDLRKNHGKEESRARDLFYGLWIPDLFMQRVQNNGTWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNEAPGLADCWGEQFETLYARYELEG 378



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI + +PFD  E++ LN+ IFETIYY AL+ SCE+AA +G Y+TY GSP+S
Sbjct: 522 LGVQGLADAFILLGMPFDSEEAQQLNRDIFETIYYHALKTSCELAAEEGVYETYAGSPIS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ DMW V P+  WDW +L+ + L  G++
Sbjct: 582 KGALQPDMWNVKPSTRWDWDSLRQMILNNGVR 613



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 45/54 (83%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++Y  VN+ +G ++P+I+D  Y+II+KNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETVKDMYYHVNERSGLKSPLIADDVYDIIIKNAPRLDSEIIYDRDFDYDYFGFK 149



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L+    L+  A  +V   KLWFA+L++QIETG PY+L+KDACNRKSNQQNL
Sbjct: 361 DCWGEQFETLYARYELEGRAKKVVQAQKLWFAVLEAQIETGNPYILFKDACNRKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|297797920|ref|XP_002866844.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312680|gb|EFH43103.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 807

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/480 (65%), Positives = 382/480 (79%), Gaps = 18/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIFDFLEL+KN GKEE RARDLFYGLWIPD FM RV++D QWSL C
Sbjct: 293 RKGAFAVYLEPWHADIFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WG +F+ LY +YE +GK  + V A++LW+ IL SQ+ETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGAEFERLYTQYENQGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD------------- 257
            KSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++   D             
Sbjct: 413 SKSNQQNLGTIKSSNLCTEILEYTSPTETAVCNLASIALPRFVRENDIPLDSHPSKIVGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V   VT NLNKIIDVN YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LDSKNRYFDFDKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  ES+ LNK IFETIYY AL++S EIA ++G Y+TY+GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPESQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVSKGILQPDMWNV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDWAAL++ I+K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWAALRDMISKNGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL ++GLW   +K+++I  NGSI +++ IP  LK +Y+TVWEI Q+TV+D
Sbjct: 653 FVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEIPDDLKAIYRTVWEIKQRTVVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAADRG FIDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGLKTGMYYLRSRSAADAIKFTVD 772



 Score =  281 bits (720), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 159/185 (85%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW V P+D WDWAAL++ I+K+G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVIPSDRWDWAALRDMISKNGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL ++GLW   +K+++I  NGSI +++ IP  LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTDMGLWSPTLKNKIIHENGSIVNVKEIPDDLKAIYRTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +TV+DMAADRG FIDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI
Sbjct: 708 RTVVDMAADRGCFIDQSQSLNIHMEKPNFAKLTSLHFYAWKKGLKTGMYYLRSRSAADAI 767

Query: 952 QFTID 956
           +FT+D
Sbjct: 768 KFTVD 772



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIFDFLEL+KN GKEE RARDLFYGLWIPD FM RV++D QWSL C
Sbjct: 293 RKGAFAVYLEPWHADIFDFLELRKNHGKEEHRARDLFYGLWIPDLFMERVQTDGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WG +F+ LY +YE +G
Sbjct: 353 PNEAPGLADCWGAEFERLYTQYENQG 378



 Score =  126 bits (317), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/218 (38%), Positives = 120/218 (55%), Gaps = 15/218 (6%)

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDC 611
           D  K+A   A+      + I  +      A      ++   IGVQGLAD FI + +PFD 
Sbjct: 481 DFDKLAEVTATVTVNLNKIIDVNHYPVETAKTSNMRHRPIGIGVQGLADAFILLGMPFDS 540

Query: 612 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 671
            ES+ LNK IFETIYY AL++S EIA ++G Y+TY+GSPVS+GILQ DMW V P+D WDW
Sbjct: 541 PESQQLNKDIFETIYYHALKSSSEIATKEGTYETYQGSPVSKGILQPDMWNVIPSDRWDW 600

Query: 672 AALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
           AAL+ +    G++   ++L + + T  T  +L  + C     SN  +  V+   + +VNK
Sbjct: 601 AALRDMISKNGIR--NSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNK 658

Query: 729 -------ETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
                  + G  +P + +K   II +N   +N   I D
Sbjct: 659 HLLHDLTDMGLWSPTLKNK---IIHENGSIVNVKEIPD 693



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + ++Y+ VN+ +G  +P+I+   YEIIMK+A RL+S IIYDRDF Y++FGFK
Sbjct: 96  ETVRDMYSHVNERSGLASPLIAADVYEIIMKHATRLDSEIIYDRDFEYDYFGFK 149



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V   +LW+ IL SQ+ETGTPYML+KD+CN KSNQQNL  I+
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNSKSNQQNLGTIK 424


>gi|51342225|gb|AAU01269.1| MPXV-WRAIR059 [Monkeypox virus]
 gi|58220529|gb|AAW67817.1| MPXV-SL-059 [Monkeypox virus]
 gi|59858865|gb|AAX09160.1| MPXV-COP-059 [Monkeypox virus]
 gi|68448741|gb|AAY96864.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449343|gb|AAY97463.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
 gi|68449543|gb|AAY97662.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/466 (66%), Positives = 385/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG +E R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKCIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG +E R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNDEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASC++A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCKLAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 389 VWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|1143665|emb|CAA53832.1| unnamed protein product [Variola virus]
 gi|5830619|emb|CAB54658.1| L4L protein [Variola minor virus]
          Length = 771

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/466 (66%), Positives = 383/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLASIALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLA  FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  287 bits (735), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG   IYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 74/104 (71%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLA  FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLAYAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D    ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+++L+N VN + G  +P+IS    +++ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|110636873|ref|YP_677080.1| ribonucleoside diphosphate reductase subunit alpha [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279554|gb|ABG57740.1| ribonucleoside diphosphate reductase, alpha subunit [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 794

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/508 (62%), Positives = 396/508 (77%), Gaps = 7/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY +WI D FM+RVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G+ F+ LY+KYE EG+  + + A++LWFAIL++Q+ETGTPYMLYKDA N
Sbjct: 353 PHEAPGLADCYGKDFEALYEKYEKEGRARKTIKAQELWFAILEAQVETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+E+TS +EVAVCNLAS+AL  ++   +  ++  KL DV  
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIMEFTSPEEVAVCNLASLALPKFV--INGKFDHQKLYDVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           + TKNLNKIIDVN+YPV EA  SN RHRPIG+GVQGLAD FI +R+PF+ +E++ LN  I
Sbjct: 471 VATKNLNKIIDVNYYPVPEAERSNKRHRPIGLGVQGLADAFILLRMPFESDEAKQLNIDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
            ETIYY A+ AS ++A + GPY+T++GSPVS+GI Q+DMWGVTP +  +DW ALK ++ K
Sbjct: 531 HETIYYAAMTASKDLAEKLGPYETFKGSPVSKGIFQFDMWGVTPASGRYDWEALKREVKK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DL++L L
Sbjct: 591 HGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLIKLNL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD MK++LI  NGS+Q+I  IPQ +KDLYKT WEI  KT++DM+ADRGA+I QSQSLNI
Sbjct: 651 WDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAWEIKGKTLIDMSADRGAYICQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M E N+ K++SMHF+ W  GLKTGMYYLRTK AANAIQFT++K     A       + +
Sbjct: 711 FMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSAANAIQFTVEK----QAEVQLAPGTTD 766

Query: 570 EIQADQEQAMAAMICRRDNKEDCIGVQG 597
           +   D E+    M C  DN E C    G
Sbjct: 767 QSIVDAEKKAKDMACSLDNPEGCESCSG 794



 Score =  304 bits (778), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/229 (63%), Positives = 177/229 (77%), Gaps = 5/229 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP +  +DW ALK ++ KHGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDMWGVTPASGRYDWEALKREVKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DL++L LWDD MK++LI  NGS+Q+I  IPQ +KDLYKT W
Sbjct: 625 YTRRVLSGEFVVVNKHLLKDLIKLNLWDDKMKNRLIEMNGSVQNINNIPQNIKDLYKTAW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  KT++DM+ADRGA+I QSQSLNI+M E N+ K++SMHF+ W  GLKTGMYYLRTK A
Sbjct: 685 EIKGKTLIDMSADRGAYICQSQSLNIFMPEANFGKLTSMHFYAWNKGLKTGMYYLRTKSA 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           ANAIQFT++  K A    +  T  Q  +  D E+    M C  DN E C
Sbjct: 745 ANAIQFTVE--KQAEVQLAPGTTDQSIV--DAEKKAKDMACSLDNPEGC 789



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY +WI D FM+RVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYAMWISDLFMKRVEENGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G+ F+ LY+KYE EG
Sbjct: 353 PHEAPGLADCYGKDFEALYEKYEKEG 378



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+ +E++ LN  I ETIYY A+ AS ++A + GPY+T++GSPVS
Sbjct: 502 LGVQGLADAFILLRMPFESDEAKQLNIDIHETIYYAAMTASKDLAEKLGPYETFKGSPVS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GI Q+DMWGVTP +  +DW ALK     +G++
Sbjct: 562 KGIFQFDMWGVTPASGRYDWEALKREVKKHGVR 594



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL++Q+ETGTPYMLYKDA NRKSNQ+NL  I+
Sbjct: 388 ELWFAILEAQVETGTPYMLYKDAANRKSNQKNLGTIK 424



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++K+++     ++ LY  V+ +TG    MIS++ YE I KNA  L+SAIIYDRD+ Y++F
Sbjct: 87  HKKTSKSFANTMKRLYTYVDPKTGENASMISNEVYEFIRKNAAILDSAIIYDRDYGYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149


>gi|255710753|ref|XP_002551660.1| KLTH0A04686p [Lachancea thermotolerans]
 gi|238933037|emb|CAR21218.1| KLTH0A04686p [Lachancea thermotolerans CBS 6340]
          Length = 879

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/482 (64%), Positives = 390/482 (80%), Gaps = 5/482 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RV+ +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F+ LY++Y  EG+  + + A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLSDVYGDEFEALYERYVQEGRGRKTIKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS++L  +I  ++      YNF KL 
Sbjct: 413 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASLSLPAFIETSEDGQTQWYNFDKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT NLN++ID N+YPVE ARNSNMRHRP+ +GVQGLAD F+ +R+PFD  E++ L
Sbjct: 473 EIAKVVTHNLNQVIDRNYYPVESARNSNMRHRPVALGVQGLADAFMILRIPFDSQEAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ALE S E+A   GPY+T+EGSP SQGILQ+DMW   PTDLWDW  LK K
Sbjct: 533 NIQIFETIYHAALERSNELAVEHGPYETFEGSPASQGILQFDMWDKKPTDLWDWETLKAK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K G+RNSLL+APMPTAST+QILGNNE FEPYTSN+YSRRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMYSRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+W+D MK  +I +NGSIQ++  IPQKLKDLYKTVWE+ QKT+++MAADR  +IDQSQS
Sbjct: 653 LGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWELSQKTIIEMAADRACYIDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK+ +A+    K+A 
Sbjct: 713 LNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKS-VASMAGDKEAD 771

Query: 567 SQ 568
            Q
Sbjct: 772 LQ 773



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/190 (69%), Positives = 161/190 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   PTDLWDW  LK KI K G+RNSLL+APMPTAST+QILGNNE FEPYTSN+Y
Sbjct: 571 LQFDMWDKKPTDLWDWETLKAKIVKTGLRNSLLLAPMPTASTSQILGNNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LLRDLV+LG+W+D MK  +I +NGSIQ++  IPQKLKDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLRDLVDLGIWNDAMKSHIISDNGSIQNLPNIPQKLKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QKT+++MAADR  +IDQSQSLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 LSQKTIIEMAADRACYIDQSQSLNVHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKT 958
            AIQFTIDK+
Sbjct: 751 AAIQFTIDKS 760



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RV+ +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFVDIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G++F+ LY++Y  EG
Sbjct: 353 PSEAPGLSDVYGDEFEALYERYVQEG 378



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+PFD  E++ LN QIFETIY+ ALE S E+A   GPY+T+EGSP 
Sbjct: 507 ALGVQGLADAFMILRIPFDSQEAKELNIQIFETIYHAALERSNELAVEHGPYETFEGSPA 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   PTDLWDW  LK   +  GL+
Sbjct: 567 SQGILQFDMWDKKPTDLWDWETLKAKIVKTGLR 599



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTIHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+ +L++ VN + G  +PMIS + ++II K+ D LNSAI+YDRDF YN+FGFK
Sbjct: 90  TTKQFSQVVSDLFHYVNPKNGIHSPMISQEVFDIIQKHKDELNSAIVYDRDFQYNYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+MLYKDACNRKSNQ+NL VI+
Sbjct: 388 KLWYAILEAQTETGTPFMLYKDACNRKSNQKNLGVIK 424


>gi|383280241|pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
           Amppnp And Cdp
 gi|383280242|pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
           Dgtp And Adp
          Length = 888

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|6320914|ref|NP_010993.1| ribonucleotide-diphosphate reductase subunit RNR1 [Saccharomyces
           cerevisiae S288c]
 gi|730514|sp|P21524.2|RIR1_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 1;
           AltName: Full=Ribonucleotide reductase R1 subunit 1;
           AltName: Full=Ribonucleotide reductase large subunit 1
 gi|93278634|pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278635|pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
 gi|93278636|pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279171|pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279172|pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279173|pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279174|pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279175|pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279176|pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279177|pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
 gi|93279277|pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
           With Ligands And Subunit Peptides
 gi|197107210|pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|197107212|pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
           Eukaryotic Ribonucleotide Reductase
 gi|290560304|pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
           With Designed Adp Analog Compound
 gi|323714514|pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714515|pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714516|pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|323714517|pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
           Datp Bound In The A-Site
 gi|383875418|pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
           And Adp
 gi|383875420|pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
           And Cdp
 gi|414145322|pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
           Ribonucleotide Reductase
 gi|603306|gb|AAB64606.1| Rnr1p: Ribonucleotide reductase [Saccharomyces cerevisiae]
 gi|256271462|gb|EEU06516.1| Rnr1p [Saccharomyces cerevisiae JAY291]
 gi|285811701|tpg|DAA07729.1| TPA: ribonucleotide-diphosphate reductase subunit RNR1
           [Saccharomyces cerevisiae S288c]
          Length = 888

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|422294256|gb|EKU21556.1| ribonucleoside-diphosphate reductase subunit M1 [Nannochloropsis
           gaditana CCMP526]
          Length = 974

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/491 (63%), Positives = 382/491 (77%), Gaps = 29/491 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+ L+L+KN GKEE RARDLFYGLWIPD FM RVE D  WSLMC
Sbjct: 422 RPGAFAIYLEPWHADIFEVLDLRKNHGKEEARARDLFYGLWIPDLFMERVEEDRTWSLMC 481

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D  G+ F DLY KYE EG+  + V A+ LWFAILDSQIETGTPYMLYKDACN
Sbjct: 482 PDQCPGLADCHGQAFRDLYLKYEREGRVKKTVRAQDLWFAILDSQIETGTPYMLYKDACN 541

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
            KSNQQNLGTIK SNLCTEIV+YTS +EVAVCNLAS+ L  ++                 
Sbjct: 542 LKSNQQNLGTIKSSNLCTEIVQYTSAEEVAVCNLASVVLPKFVVQKAGTGGKDDGQAADL 601

Query: 254 ------NPADK-----TYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI 302
                  P  K     T++   L +V K+V +NLNK+ID N YPV EA  SN RHRPIG+
Sbjct: 602 TAQRGKRPGSKSRQELTFDHQALYNVTKVVVRNLNKVIDRNLYPVPEAERSNRRHRPIGL 661

Query: 303 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 362
           GVQGLAD FI++RLPFD  E+R  N++IFET+Y+ A EAS E+A ++GPY++Y GSP SQ
Sbjct: 662 GVQGLADTFIKLRLPFDSPEARQTNQEIFETMYFAASEASMELAKKEGPYESYPGSPASQ 721

Query: 363 GILQYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 421
           G LQ+D+WGVTP +  WDWA LK++IA+HG+RNSLL+APMPTASTAQILG NE  EPYTS
Sbjct: 722 GKLQFDLWGVTPQSGRWDWAGLKKEIAQHGLRNSLLLAPMPTASTAQILGYNECIEPYTS 781

Query: 422 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 481
           N+Y+RRV +GEF VVN HLL DL   GLW   +++ L+   GS+Q+I G+PQ++K++Y+T
Sbjct: 782 NLYARRVKAGEFIVVNPHLLEDLTAQGLWTPAVRNALVAEGGSVQNIPGLPQEMKEIYRT 841

Query: 482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           VWEI QK+++DMAADRGA+IDQSQSLN +MAE +Y++++SMHF+GWK GLKTGMYYLRTK
Sbjct: 842 VWEIKQKSLIDMAADRGAYIDQSQSLNAFMAEPDYSRLTSMHFYGWKRGLKTGMYYLRTK 901

Query: 542 PAANAIQFTID 552
           PAANAIQFT+D
Sbjct: 902 PAANAIQFTVD 912



 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 162/189 (85%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WGVTP +  WDWA LK++IA+HG+RNSLL+APMPTASTAQILG NE  EPYTSN+
Sbjct: 724 LQFDLWGVTPQSGRWDWAGLKKEIAQHGLRNSLLLAPMPTASTAQILGYNECIEPYTSNL 783

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRV +GEF VVN HLL DL   GLW   +++ L+   GS+Q+I G+PQ++K++Y+TVW
Sbjct: 784 YARRVKAGEFIVVNPHLLEDLTAQGLWTPAVRNALVAEGGSVQNIPGLPQEMKEIYRTVW 843

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK+++DMAADRGA+IDQSQSLN +MAE +Y++++SMHF+GWK GLKTGMYYLRTKPA
Sbjct: 844 EIKQKSLIDMAADRGAYIDQSQSLNAFMAEPDYSRLTSMHFYGWKRGLKTGMYYLRTKPA 903

Query: 948 ANAIQFTID 956
           ANAIQFT+D
Sbjct: 904 ANAIQFTVD 912



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 70/88 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+ L+L+KN GKEE RARDLFYGLWIPD FM RVE D  WSLMC
Sbjct: 422 RPGAFAIYLEPWHADIFEVLDLRKNHGKEEARARDLFYGLWIPDLFMERVEEDRTWSLMC 481

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+ C GL+D  G+ F DLY KYE EG V
Sbjct: 482 PDQCPGLADCHGQAFRDLYLKYEREGRV 509



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 75/100 (75%), Gaps = 1/100 (1%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   +GVQGLAD FI++RLPFD  E+R  N++IFET+Y+ A EAS E+A ++GPY++
Sbjct: 654 RRHRPIGLGVQGLADTFIKLRLPFDSPEARQTNQEIFETMYFAASEASMELAKKEGPYES 713

Query: 646 YEGSPVSQGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           Y GSP SQG LQ+D+WGVTP +  WDWA LK     +GL+
Sbjct: 714 YPGSPASQGKLQFDLWGVTPQSGRWDWAGLKKEIAQHGLR 753



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/46 (73%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   V    LWFAILDSQIETGTPYMLYKDACN KSNQQNL  I+
Sbjct: 508 RVKKTVRAQDLWFAILDSQIETGTPYMLYKDACNLKSNQQNLGTIK 553



 Score = 42.0 bits (97), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 39/63 (61%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++N    + + +LY+ V+  TG     IS++   ++  +   L++A+ ++RD+ +++F
Sbjct: 216 HKETNPSFSQTMRQLYDHVDPATGHAAGFISEEVMALVAAHGPTLDAAVRHERDYFFDYF 275

Query: 768 GFK 770
           GFK
Sbjct: 276 GFK 278


>gi|255070623|ref|XP_002507393.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
 gi|226522668|gb|ACO68651.1| ribonucleoside-diphosphate reductase [Micromonas sp. RCC299]
          Length = 841

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/549 (59%), Positives = 414/549 (75%), Gaps = 51/549 (9%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++ +W+L C
Sbjct: 294 RKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEWTLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY+KYEAEGK  + V A++LWFAIL+SQ+ETG PYML+KDACN
Sbjct: 354 PNEAPGLADCWGEEFEALYEKYEAEGKGKKTVKAQQLWFAILESQVETGNPYMLFKDACN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NP------------ 255
           RKSNQQNLGTI+ SNLCTEIVEYTS +E AVCNLASIAL  ++   NP            
Sbjct: 414 RKSNQQNLGTIRSSNLCTEIVEYTSPEETAVCNLASIALPRFVIENNPQSPTGRTEAKKL 473

Query: 256 ------ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLAD 309
                 A++ ++  KL ++ + VT+NLN+IIDVN+YPVE AR SNM+HRPIG+GVQGLAD
Sbjct: 474 RGSIGAANRYFDHDKLAEITRKVTRNLNRIIDVNYYPVETARRSNMKHRPIGLGVQGLAD 533

Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369
           +FI + +PFD  E++ LN +IFETIY+ AL  S +IA RDG Y++Y GSPVS G+LQ DM
Sbjct: 534 VFILLGMPFDSPEAKKLNAEIFETIYFAALTESNDIAKRDGTYESYPGSPVSNGVLQPDM 593

Query: 370 WGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 426
           WG+T     D  DW  L+ KI++HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+R
Sbjct: 594 WGLTEMPGGDRHDWTGLRTKISEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYAR 653

Query: 427 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
           RVLSGEF VVN HLL DL E+GLWD ++K++LI NNGS+Q ++ IP  LK++YKTVWEI 
Sbjct: 654 RVLSGEFTVVNQHLLSDLTEMGLWDPSLKNELIANNGSVQSLD-IPDNLKEIYKTVWEIK 712

Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA+A
Sbjct: 713 QRILVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAADA 772

Query: 547 IQFTIDKTKMANAMASKDARSQEEIQADQEQA---------------------MAAMI-C 584
           ++FT+D     N++ +K+A S++E+  D+E                       MAA I C
Sbjct: 773 VKFTVD----PNSVKAKNASSKKEVVGDKENQPANGEGAKKGPVDPDMEEEALMAAKIAC 828

Query: 585 RRDNKEDCI 593
              NK++C+
Sbjct: 829 SLANKDECV 837



 Score =  282 bits (722), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 138/251 (54%), Positives = 183/251 (72%), Gaps = 30/251 (11%)

Query: 772 DMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWG+T     D  DW  L+ KI++HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 592 DMWGLTEMPGGDRHDWTGLRTKISEHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 651

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL E+GLWD ++K++LI NNGS+Q ++ IP  LK++YKTVWE
Sbjct: 652 ARRVLSGEFTVVNQHLLSDLTEMGLWDPSLKNELIANNGSVQSLD-IPDNLKEIYKTVWE 710

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA
Sbjct: 711 IKQRILVDMAADRGAFIDQSQSFNVHMSDANSGKLTSLHFYAWKKGLKTGMYYLRSRAAA 770

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA---------------------MAAMI 987
           +A++FT+D     N++ +K+  S++E+  D+E                       MAA I
Sbjct: 771 DAVKFTVD----PNSVKAKNASSKKEVVGDKENQPANGEGAKKGPVDPDMEEEALMAAKI 826

Query: 988 -CRRDNKEDCL 997
            C   NK++C+
Sbjct: 827 ACSLANKDECV 837



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++ +W+L C
Sbjct: 294 RKGAFAIYLEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGEWTLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY+KYEAEG
Sbjct: 354 PNEAPGLADCWGEEFEALYEKYEAEG 379



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI + +PFD  E++ LN +IFETIY+ AL  S +IA RDG Y++Y GSPVS
Sbjct: 526 LGVQGLADVFILLGMPFDSPEAKKLNAEIFETIYFAALTESNDIAKRDGTYESYPGSPVS 585

Query: 653 QGILQYDMWGVTPT---DLWDWAALKVLALVYGLK 684
            G+LQ DMWG+T     D  DW  L+     +G++
Sbjct: 586 NGVLQPDMWGLTEMPGGDRHDWTGLRTKISEHGVR 620



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L++   A  K    V   +LWFAIL+SQ+ETG PYML+KDACNRKSNQQNL
Sbjct: 362 DCWGEEFEALYEKYEAEGKGKKTVKAQQLWFAILESQVETGNPYMLFKDACNRKSNQQNL 421

Query: 717 EVI 719
             I
Sbjct: 422 GTI 424



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++ +Y  VNK  G  +P+++D  YEII +NADR +S I+YDRDF+Y++FG+K
Sbjct: 98  ETMKVMYEHVNKRNGKWSPLLADDVYEIIKENADRFDSEIVYDRDFDYDYFGYK 151


>gi|50557402|ref|XP_506109.1| YALI0F31735p [Yarrowia lipolytica]
 gi|49651979|emb|CAG78922.1| YALI0F31735p [Yarrowia lipolytica CLIB122]
          Length = 892

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/468 (65%), Positives = 383/468 (81%), Gaps = 2/468 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+F EL+KN GKEE RARDLF  LWIPD FM RVE +A+W+LMC
Sbjct: 296 RPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVEQNAEWTLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F  LY++YE EG+  R +PA+KLW+ ILD Q E+G P+MLYKD+CN
Sbjct: 356 PNECPGLDDVYGDEFKQLYEQYEKEGRGRRTIPAQKLWYHILDCQTESGNPFMLYKDSCN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           RKSNQ+NLGTIK SNLC EIVEY+S DEVAVCNLASIAL  ++   D    Y+F KL D+
Sbjct: 416 RKSNQKNLGTIKSSNLCCEIVEYSSPDEVAVCNLASIALPTFVTRDDTNSFYDFKKLHDI 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           AK++ +NLN IID N+YPV EA+ SNMRHRPI +GVQGLAD F+ +RLPF+  E++ LN 
Sbjct: 476 AKVIVRNLNAIIDRNYYPVPEAKKSNMRHRPIALGVQGLADTFMALRLPFESEEAKKLNI 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+GA+EAS E+A  DG Y+T++GSP S+G LQ+D+W VTP++LW+W  LK KI 
Sbjct: 536 QIFETIYHGAVEASYEMALEDGAYETFQGSPASKGDLQFDLWNVTPSELWEWDDLKAKIM 595

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN  LL+DLVE+G
Sbjct: 596 KTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQIVNPWLLKDLVEVG 655

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++ MK++++ +NGS+Q+I  IPQ++KDLYKTVWEI QK +++MAADR  FIDQSQSLN
Sbjct: 656 LWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWEISQKRIIEMAADRSPFIDQSQSLN 715

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           I++ +    K++SMHF+GWK GLKTGMYYLRT  AA  IQFTID+  +
Sbjct: 716 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAAAPIQFTIDQEAL 763



 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 161/192 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W VTP++LW+W  LK KI K G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 572 LQFDLWNVTPSELWEWDDLKAKIMKTGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLVE+GLW++ MK++++ +NGS+Q+I  IPQ++KDLYKTVWE
Sbjct: 632 SRRVLAGEFQIVNPWLLKDLVEVGLWNETMKNRIVADNGSVQNIPNIPQEIKDLYKTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADR  FIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT  AA
Sbjct: 692 ISQKRIIEMAADRSPFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTMAAA 751

Query: 949 NAIQFTIDKTKM 960
             IQFTID+  +
Sbjct: 752 APIQFTIDQEAL 763



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+F EL+KN GKEE RARDLF  LWIPD FM RVE +A+W+LMC
Sbjct: 296 RPGAFAMYLEPWHDDIFEFCELRKNHGKEEIRARDLFLALWIPDLFMERVEQNAEWTLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++F  LY++YE EG
Sbjct: 356 PNECPGLDDVYGDEFKQLYEQYEKEG 381



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +RLPF+  E++ LN QIFETIY+GA+EAS E+A  DG Y+T++GSP S
Sbjct: 509 LGVQGLADTFMALRLPFESEEAKKLNIQIFETIYHGAVEASYEMALEDGAYETFQGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+W VTP++LW+W  LK   +  G++
Sbjct: 569 KGDLQFDLWNVTPSELWEWDDLKAKIMKTGMR 600



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++ GI +    GV+  +L + AA +  A +  L   +AIL ++I             +++
Sbjct: 46  IASGIYE----GVSTIELDNLAA-ETAAYMTTLHPDYAILAARIAVSN--------LHKQ 92

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+ +LY+ VN      +PM+S + Y+ +  NAD LN AI+YDRDF YN+FGFK
Sbjct: 93  TKKQFSQVVYDLYHYVNPRNKKHSPMVSKELYDTVQANADELNGAILYDRDFTYNYFGFK 152



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+ ILD Q E+G P+MLYKD+CNRKSNQ+NL  I+
Sbjct: 391 KLWYHILDCQTESGNPFMLYKDSCNRKSNQKNLGTIK 427


>gi|365760174|gb|EHN01914.1| Rnr3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 870

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/483 (63%), Positives = 389/483 (80%), Gaps = 6/483 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GL D WG++F++LY +YE EG+  + + A+KLW+AIL SQ ETGTP+M+YKDACN
Sbjct: 353 PSSAPGLDDVWGDEFEELYTRYEREGRG-KTITAQKLWYAILQSQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S +E AVCNLASIAL  ++  A+     TYNF  L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVEVAEDGKTATYNFQSLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+AK++T NLN++ID N+YPV EARNSNMRHRPI +GVQGLAD ++ +RLPF+C+E++ L
Sbjct: 472 DIAKVITHNLNRVIDRNYYPVPEARNSNMRHRPIALGVQGLADTYMMLRLPFECDEAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  LK+ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPSSKGILQFDMWNAKPFGMWDWETLKKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSI+D+  +PQ LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIKDLPNVPQDLKELYKTVWEISQKTIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+  +A+  A+  A 
Sbjct: 712 LNLFLQSPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-DVADQAATHIAS 770

Query: 567 SQE 569
           + E
Sbjct: 771 TAE 773



 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  LK+ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLKKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSI+D+  +PQ LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIKDLPNVPQDLKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSIYIDQSHSLNLFLQSPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GL D WG++F++LY +YE EG
Sbjct: 353 PSSAPGLDDVWGDEFEELYTRYEREG 378



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+C+E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 506 ALGVQGLADTYMMLRLPFECDEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPS 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  LK   + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLKKDIVKHGLR 598



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARVAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ VN  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWVNPATGKLAPMISDEVYNIVMENKDTLNSAIVYDRDFKYTYFGFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP S   L  D+WG    +L+  +        +   KLW+AIL SQ ETGT
Sbjct: 345 DGPWTLF--SPSSAPGLD-DVWGDEFEELYTRYEREGRGKTITAQKLWYAILQSQTETGT 401

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 402 PFMVYKDACNRKTNQQNLGTIK 423


>gi|349577734|dbj|GAA22902.1| K7_Rnr1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 888

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/467 (64%), Positives = 382/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGIR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|151944785|gb|EDN63044.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|190405633|gb|EDV08900.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|259145984|emb|CAY79244.1| Rnr1p [Saccharomyces cerevisiae EC1118]
 gi|323333854|gb|EGA75244.1| Rnr1p [Saccharomyces cerevisiae AWRI796]
 gi|323348888|gb|EGA83125.1| Rnr1p [Saccharomyces cerevisiae Lalvin QA23]
 gi|323355271|gb|EGA87096.1| Rnr1p [Saccharomyces cerevisiae VL3]
 gi|392299768|gb|EIW10860.1| Rnr1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 888

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/467 (64%), Positives = 382/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGIR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|12002837|gb|AAG43397.1|AF168794_1 ribonucleotide reductase subunit M1 [Xenopus laevis]
          Length = 520

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/417 (73%), Positives = 366/417 (87%), Gaps = 1/417 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 105 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 164

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG+KF++LY+KYE EG+  + V A+++W+AI++SQ ETGTPYMLYKDACN
Sbjct: 165 PHECPGLEEVWGDKFEELYEKYEREGRARKVVKAQQVWYAIIESQTETGTPYMLYKDACN 224

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS+ EVAVCNLAS+ALNMY+  ++++++F KL DV K
Sbjct: 225 RKSNQQNLGTIKCSNLCTEIVEYTSEKEVAVCNLASLALNMYVT-SERSFDFKKLADVTK 283

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNLNKII++NFYPV EA  SN +HRPIGIGVQGLAD FI MR PF   ++++LNKQI
Sbjct: 284 VIVKNLNKIIEINFYPVPEAEYSNKKHRPIGIGVQGLADAFILMRYPFQSEKAQMLNKQI 343

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY+TYEG PVS+GILQYDMW VTPTDLWDW ALKEKIAK+
Sbjct: 344 FETIYYAALESSCELAKELGPYETYEGCPVSKGILQYDMWNVTPTDLWDWTALKEKIAKY 403

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HL++DL E GLW
Sbjct: 404 GIRNSLLLAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLMKDLTEQGLW 463

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           ++ MK+Q+I NNGSIQ++  IP +LK+LYKTVWEI QKTV+ MAADRGAFIDQSQSL
Sbjct: 464 NEEMKNQIIANNGSIQNVPDIPAELKELYKTVWEISQKTVITMAADRGAFIDQSQSL 520



 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/143 (78%), Positives = 129/143 (90%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW ALKEKIAK+G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 378 LQYDMWNVTPTDLWDWTALKEKIAKYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 437

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN HL++DL E GLW++ MK+Q+I NNGSIQ++  IP +LK+LYKTVWE
Sbjct: 438 TRRVLSGEFQIVNPHLMKDLTEQGLWNEEMKNQIIANNGSIQNVPDIPAELKELYKTVWE 497

Query: 889 IPQKTVLDMAADRGAFIDQSQSL 911
           I QKTV+ MAADRGAFIDQSQSL
Sbjct: 498 ISQKTVITMAADRGAFIDQSQSL 520



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 75/86 (87%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FDFL+LKKNTGKEE RARDLFY +WIPD FM+RVE++  WSLMC
Sbjct: 105 RPGAFAIYLEPWHYDVFDFLDLKKNTGKEEQRARDLFYAMWIPDLFMKRVENNLDWSLMC 164

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL + WG+KF++LY+KYE EG
Sbjct: 165 PHECPGLEEVWGDKFEELYEKYEREG 190



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF   ++++LNKQIFETIYY ALE+SCE+A   GPY+TYEG PVS
Sbjct: 315 IGVQGLADAFILMRYPFQSEKAQMLNKQIFETIYYAALESSCELAKELGPYETYEGCPVS 374

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTPTDLWDW ALK     YG++
Sbjct: 375 KGILQYDMWNVTPTDLWDWTALKEKIAKYGIR 406



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   ++W+AI++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 195 VVKAQQVWYAIIESQTETGTPYMLYKDACNRKSNQQNLGTIK 236


>gi|372209391|ref|ZP_09497193.1| ribonucleoside-diphosphate reductase subunit alpha
           [Flavobacteriaceae bacterium S85]
          Length = 793

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/508 (61%), Positives = 398/508 (78%), Gaps = 17/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+L+KNTG EE RARDLF  LWI D FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIFDFLDLRKNTGAEEKRARDLFLALWISDLFMKRVEENGDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D++GE+F+ LY +YEA+GK  + + AR+LW  +L++QIETG PYMLYKDA N
Sbjct: 352 PNECPGLYDTYGEEFEALYTQYEAQGKGRKTIKARELWEKVLEAQIETGNPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
           RKSNQ+NLG I+ SNLCTEI+EYT+KDEVAVCNLASIA+ M++   N  +K +N  KL  
Sbjct: 412 RKSNQKNLGVIRSSNLCTEIMEYTAKDEVAVCNLASIAIPMFVETNNKGEKYFNHDKLYK 471

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K VT+NL+ +ID N+YPV+EA NSNMRHRP+G+G+QGLAD FI +RLPF  +E++ LN
Sbjct: 472 VVKKVTRNLDTVIDRNYYPVKEAENSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKALN 531

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALK 384
           K IFET+Y+ A+E+S EIA++ G Y T+EGSP+SQG  Q+++WGV   +L   WDWA L+
Sbjct: 532 KDIFETLYFAAVESSMEIASKKGAYSTFEGSPMSQGEFQFNLWGVKDEELSGRWDWATLR 591

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           E++ K+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DL
Sbjct: 592 EQVKKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDL 651

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           VELGLW++++K++L+  NGSIQ IEGIP  LK+LYKTVWE+  K ++DM+  RG FIDQS
Sbjct: 652 VELGLWNNDLKEELMRANGSIQHIEGIPADLKELYKTVWELSMKDIIDMSRQRGYFIDQS 711

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
           QSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK A NAI+FT+   K         
Sbjct: 712 QSLNLFMESPNYSKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIKFTLSNDK--------- 762

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKEDC 592
              QE+     E+  A M+  ++N +DC
Sbjct: 763 --KQEDKPMSTEEFKAMMLQSKENPDDC 788



 Score =  289 bits (740), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 137/231 (59%), Positives = 176/231 (76%), Gaps = 14/231 (6%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WGV   +L   WDWA L+E++ K+GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 569 FQFNLWGVKDEELSGRWDWATLREQVKKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 628

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVELGLW++++K++L+  NGSIQ IEGIP  LK+LYKT
Sbjct: 629 NIYTRRVLSGEFIVVNKHLLEDLVELGLWNNDLKEELMRANGSIQHIEGIPADLKELYKT 688

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 689 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMESPNYSKLTSMHFYAWKSGLKTGMYYLRTK 748

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A NAI+FT+   K            QE+     E+  A M+  ++N +DC
Sbjct: 749 SAVNAIKFTLSNDK-----------KQEDKPMSTEEFKAMMLQSKENPDDC 788



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+L+KNTG EE RARDLF  LWI D FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIFDFLDLRKNTGAEEKRARDLFLALWISDLFMKRVEENGDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D++GE+F+ LY +YEA+G
Sbjct: 352 PNECPGLYDTYGEEFEALYTQYEAQG 377



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +RLPF  +E++ LNK IFET+Y+ A+E+S EIA++ G Y T+EGSP+S
Sbjct: 506 LGIQGLADAFIMLRLPFTSDEAKALNKDIFETLYFAAVESSMEIASKKGAYSTFEGSPMS 565

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WGV   +L   WDWA L+
Sbjct: 566 QGEFQFNLWGVKDEELSGRWDWATLR 591



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I       L+K+   +KS  + +    E
Sbjct: 49  GVTTSELDNLAA-EIAATMTTAHPDYAKLAARISVSN---LHKNT--KKSFSKTMS---E 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG  +P++SD+ Y++I  NA  L+SAI+YDRDFNY+FFGFK
Sbjct: 100 LYGYVNPRTGLESPLLSDEVYKVIQDNAALLDSAIVYDRDFNYDFFGFK 148



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  +L++QIETG PYMLYKDA NRKSNQ+NL VI
Sbjct: 387 ELWEKVLEAQIETGNPYMLYKDAANRKSNQKNLGVI 422


>gi|145340510|ref|XP_001415366.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575589|gb|ABO93658.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 817

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/528 (61%), Positives = 403/528 (76%), Gaps = 35/528 (6%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIY+EPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++  W+LMC
Sbjct: 296 RKGAFAIYIEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGDWTLMC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D WGE+F+ LY+KYEAEGK  + + A++LWFAIL+SQ+ETG PYML+KDACN
Sbjct: 356 PNECPGLADCWGEEFETLYQKYEAEGKGKKTIKAQQLWFAILESQVETGNPYMLFKDACN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKT-------- 259
           RKSNQQNLGTIK SNLCTEIVE+TS +E AVCNLASIAL  ++   NP+  T        
Sbjct: 416 RKSNQQNLGTIKSSNLCTEIVEFTSPEETAVCNLASIALPRFVIENNPSSPTGRTEVKKL 475

Query: 260 ----------YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLAD 309
                     ++  KL ++ + VT+NLN+IIDVN+YPVE A+ SNMRHRPIG+GVQGLAD
Sbjct: 476 VGSLKAKERYFDHDKLFEITRKVTRNLNRIIDVNYYPVETAKRSNMRHRPIGLGVQGLAD 535

Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369
           +FI + L FD  E++ LN +IFETIY+ AL  S  +A  +GPY TYEGSPVS+GILQ DM
Sbjct: 536 VFILLGLAFDSPEAQKLNAEIFETIYFAALTESNALAVVEGPYTTYEGSPVSKGILQPDM 595

Query: 370 WGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 426
           WG+T     D  DWA L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+R
Sbjct: 596 WGLTQMPGGDRHDWAGLRAAIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYAR 655

Query: 427 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
           RVLSGEF VVN HLL DL ELGLWD  +K+ LI NNGS+ D+E IP+ LK +YKTVWEI 
Sbjct: 656 RVLSGEFTVVNQHLLSDLTELGLWDPELKNSLIANNGSVADLE-IPENLKAIYKTVWEIK 714

Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA+A
Sbjct: 715 QRILVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAADA 774

Query: 547 IQFTID-KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
           I+FT+D K K    M      S+EE +A      A + C   NK+DC+
Sbjct: 775 IKFTVDVKQKQVTKM------SEEEKEA---YLAAKLQCSLTNKDDCV 813



 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 141/230 (61%), Positives = 174/230 (75%), Gaps = 14/230 (6%)

Query: 772 DMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWG+T     D  DWA L+  IA+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 594 DMWGLTQMPGGDRHDWAGLRAAIAQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 653

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL ELGLWD  +K+ LI NNGS+ D+E IP+ LK +YKTVWE
Sbjct: 654 ARRVLSGEFTVVNQHLLSDLTELGLWDPELKNSLIANNGSVADLE-IPENLKAIYKTVWE 712

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQS N++M++ N  K++S+HF+ WK GLKTGMYYLR++ AA
Sbjct: 713 IKQRILVDMAADRGAFIDQSQSFNVHMSDPNSGKLTSLHFYAWKKGLKTGMYYLRSRAAA 772

Query: 949 NAIQFTID-KTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D K K    M      S+EE +A      A + C   NK+DC+
Sbjct: 773 DAIKFTVDVKQKQVTKM------SEEEKEA---YLAAKLQCSLTNKDDCV 813



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIY+EPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE++  W+LMC
Sbjct: 296 RKGAFAIYIEPWHADIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEANGDWTLMC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D WGE+F+ LY+KYEAEG
Sbjct: 356 PNECPGLADCWGEEFETLYQKYEAEG 381



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 109/204 (53%), Gaps = 18/204 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI + L FD  E++ LN +IFETIY+ AL  S  +A  +GPY TYEGSPVS
Sbjct: 528 LGVQGLADVFILLGLAFDSPEAQKLNAEIFETIYFAALTESNALAVVEGPYTTYEGSPVS 587

Query: 653 QGILQYDMWGVTPT---DLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACN 708
           +GILQ DMWG+T     D  DWA L+     +G++   ++L + + T  T  +L  + C 
Sbjct: 588 KGILQPDMWGLTQMPGGDRHDWAGLRAAIAQHGVR--NSLLVAPMPTASTSQILGNNECF 645

Query: 709 R--KSNQQNLEVIEELYNMVNKETGTRTPMISD----KHYEIIMKNADRLNSAIIYDRDF 762
               SN     V+   + +VN+       ++SD      ++  +KN+   N+  + D + 
Sbjct: 646 EPYTSNIYARRVLSGEFTVVNQH------LLSDLTELGLWDPELKNSLIANNGSVADLEI 699

Query: 763 NYNFFGFKYDMWGVTPTDLWDWAA 786
             N       +W +    L D AA
Sbjct: 700 PENLKAIYKTVWEIKQRILVDMAA 723



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL+SQ+ETG PYML+KDACNRKSNQQNL  I+
Sbjct: 391 QLWFAILESQVETGNPYMLFKDACNRKSNQQNLGTIK 427



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + ++Y  VN+  G  +P+++D  YEII  NA+RL++ I+YDRDF Y++FG+K
Sbjct: 99  ETMTQMYEHVNERNGKWSPLLADDVYEIIKANAERLDAEIVYDRDFEYDYFGYK 152


>gi|401626001|gb|EJS43969.1| rnr1p [Saccharomyces arboricola H-6]
          Length = 887

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/467 (64%), Positives = 380/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLNK+ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNKVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ + EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L+  
Sbjct: 532 NVQIFETIYHASTEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRSD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 VMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 152/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L+  + KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRSDVMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSIYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ + EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNVQIFETIYHASTEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRSDVMKHGIR 598



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VI++LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVIDDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|401839256|gb|EJT42552.1| RNR3-like protein [Saccharomyces kudriavzevii IFO 1802]
          Length = 866

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/483 (63%), Positives = 389/483 (80%), Gaps = 6/483 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GL D WG++F++LY +YE EG+  + + A+KLW+AIL SQ ETGTP+M+YKDACN
Sbjct: 353 PSSAPGLDDVWGDEFEELYTRYEREGRG-KTITAQKLWYAILQSQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S +E AVCNLASIAL  ++  A+     TYNF  L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVEVAEDGKTATYNFQSLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+AK++T NLN++ID N+YPV EARNSNMRHRPI +GVQGLAD ++ +RLPF+C+E++ L
Sbjct: 472 DIAKVITHNLNRVIDRNYYPVPEARNSNMRHRPIALGVQGLADTYMMLRLPFECDEAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  LK+ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPSSKGILQFDMWNAKPFGMWDWETLKKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSI+D+  +PQ LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIKDLPNVPQDLKELYKTVWEISQKTIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+  +A+  A+  A 
Sbjct: 712 LNLFLQSPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-DVADQAATHIAS 770

Query: 567 SQE 569
           + E
Sbjct: 771 TAE 773



 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  LK+ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLKKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSI+D+  +PQ LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIKDLPNVPQDLKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSIYIDQSHSLNLFLQSPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GL D WG++F++LY +YE EG
Sbjct: 353 PSSAPGLDDVWGDEFEELYTRYEREG 378



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD ++ +RLPF+C+E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP S
Sbjct: 507 LGVQGLADTYMMLRLPFECDEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPSS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW   P  +WDW  LK   + +GL+
Sbjct: 567 KGILQFDMWNAKPFGMWDWETLKKDIVKHGLR 598



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARVAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ VN  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWVNPATGKLAPMISDEVYNIVMENKDTLNSAIVYDRDFKYTYFGFK 149



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP S   L  D+WG    +L+  +        +   KLW+AIL SQ ETGT
Sbjct: 345 DGPWTLF--SPSSAPGLD-DVWGDEFEELYTRYEREGRGKTITAQKLWYAILQSQTETGT 401

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 402 PFMVYKDACNRKTNQQNLGTIK 423


>gi|254565653|ref|XP_002489937.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Komagataella pastoris GS115]
 gi|238029733|emb|CAY67656.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Komagataella pastoris GS115]
 gi|328350349|emb|CCA36749.1| ribonucleoside-diphosphate reductase subunit M1 [Komagataella
           pastoris CBS 7435]
          Length = 867

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/475 (64%), Positives = 388/475 (81%), Gaps = 2/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F++LY++YE EG+  + + A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLADVYGDEFEELYERYEKEGRGRQTIKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ+NLG IK SNLC EIVEY+S +E AVCNLASIAL  ++   D    YNF KL ++
Sbjct: 413 KKTNQKNLGVIKSSNLCCEIVEYSSPEETAVCNLASIALPAFVETDDTHCWYNFEKLHEI 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN+IID NFYPV EAR SNMR+RPI +GVQGLAD F+++R+PFD  E++ LN 
Sbjct: 473 TKVVTRNLNRIIDRNFYPVPEARRSNMRNRPIAVGVQGLADAFMKLRIPFDSPEAKQLNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ ALEAS E+A  +G Y+T++GSP SQGILQYD+W   P++LW+W +LK KI 
Sbjct: 533 QIFETIYHAALEASNELAVEEGAYETFQGSPASQGILQYDLWDKKPSELWEWESLKAKIV 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 STGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LWDDNMK+ +I +NGSIQ++  IP++LK LYKTVWEI QKT++DMAADR A+IDQSQSLN
Sbjct: 653 LWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWEISQKTIIDMAADRSAYIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           I++      K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+DK  +  A  +K
Sbjct: 713 IHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAAAAIQFTVDKVAVLQASLTK 767



 Score =  291 bits (746), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 134/204 (65%), Positives = 166/204 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   P++LW+W +LK KI   G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 569 LQYDLWDKKPSELWEWESLKAKIVSTGLRNSLLVAPMPTASTSQILGYNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LGLWDDNMK+ +I +NGSIQ++  IP++LK LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGLWDDNMKNHIISDNGSIQNLPNIPEQLKGLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADR A+IDQSQSLNI++      K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKTIIDMAADRSAYIDQSQSLNIHLMAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQ 972
            AIQFT+DK  +  A  +K    Q
Sbjct: 749 AAIQFTVDKVAVLQASLTKANLDQ 772



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF F++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFAFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F++LY++YE EG
Sbjct: 353 PSEAPGLADVYGDEFEELYERYEKEG 378



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 74/97 (76%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+++R+PFD  E++ LN QIFETIY+ ALEAS E+A  +G Y+T++
Sbjct: 501 NRPIAVGVQGLADAFMKLRIPFDSPEAKQLNIQIFETIYHAALEASNELAVEEGAYETFQ 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP SQGILQYD+W   P++LW+W +LK   +  GL+
Sbjct: 561 GSPASQGILQYDLWDKKPSELWEWESLKAKIVSTGLR 597



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYHGVTTVELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V +ELY  +N + G  +P++S+  Y I+ K+AD LNSAI+YDRDF YN+FGFK
Sbjct: 90  TTKQYSQVTKELYEYINPKNGKHSPLVSEDTYNIVQKHADELNSAIVYDRDFQYNYFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+MLYKDACN+K+NQ+NL VI+
Sbjct: 388 KLWYAILEAQTETGTPFMLYKDACNKKTNQKNLGVIK 424


>gi|290984045|ref|XP_002674738.1| ribonucleotide reductase [Naegleria gruberi]
 gi|284088330|gb|EFC41994.1| ribonucleotide reductase [Naegleria gruberi]
          Length = 812

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/508 (61%), Positives = 402/508 (79%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLF GLW+ D FM+RV+ DA+WSL C
Sbjct: 293 RKGAFAIYLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL+D WGE+F+ LY KYE EGK  R + A++LWFAI+++QIETG PYMLYKD+CN
Sbjct: 353 PNEAQGLADVWGEEFNQLYTKYEREGKAKRTIKAQELWFAIIEAQIETGVPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+E+T+ DEVAVCNLASIAL  Y+N   +TY+  KL +V K
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEFTAPDEVAVCNLASIALPKYVNEETQTYDHQKLYEVVK 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I T NLNKIID N+YPVEEA+ SN RHRPIG+GVQGLAD FI+MRLPF+  E++ LN++I
Sbjct: 473 IATYNLNKIIDKNYYPVEEAKKSNFRHRPIGLGVQGLADAFIKMRLPFESEEAKNLNREI 532

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTPTD-LWDWA 381
           FETIY+ A+  S E+A  +G Y+TYEGSP+S+GI Q++ W        G T T   WDW 
Sbjct: 533 FETIYFAAMTCSMELAKVEGTYETYEGSPISKGIFQHEFWTREGEPFEGKTITSGRWDWE 592

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
            L++++ +HGVRNSLL+APMPTAST+QILGNNE FEPYTSN+Y+RRVLSGE+ V+N HL+
Sbjct: 593 GLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPVINRHLV 652

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
            DL+++ +W+  + +Q+I N GSIQ+I+GIP  +K+LYKTVWEI Q+++LD+A +R  FI
Sbjct: 653 ADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAIERSPFI 712

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           DQSQSLN++++  + +KMSSMHF+ W  GLKTGMYYLRT+PAA+AIQFT+D   M  +++
Sbjct: 713 DQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTVDPNMMKQSVS 772

Query: 562 SKDARSQEEIQADQEQAMAAMICRRDNK 589
           +  A   EE + ++E     ++C+R  +
Sbjct: 773 TSQA---EEPKQEEE----VIVCKRKKR 793



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 167/212 (78%), Gaps = 7/212 (3%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           WDW  L++++ +HGVRNSLL+APMPTAST+QILGNNE FEPYTSN+Y+RRVLSGE+ V+N
Sbjct: 589 WDWEGLRQQVLQHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNVYTRRVLSGEYPVIN 648

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
            HL+ DL+++ +W+  + +Q+I N GSIQ+I+GIP  +K+LYKTVWEI Q+++LD+A +R
Sbjct: 649 RHLVADLIKIDMWNPTIVNQIIGNRGSIQNIQGIPDDIKELYKTVWEIKQRSLLDLAIER 708

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
             FIDQSQSLN++++  + +KMSSMHF+ W  GLKTGMYYLRT+PAA+AIQFT+D   M 
Sbjct: 709 SPFIDQSQSLNVFISIPSVSKMSSMHFYAWSKGLKTGMYYLRTQPAADAIQFTVDPNMMK 768

Query: 962 NAMASKDTRSQEEIQADQEQAMAAMICRRDNK 993
            +++   T   EE + ++E     ++C+R  +
Sbjct: 769 QSVS---TSQAEEPKQEEE----VIVCKRKKR 793



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLF GLW+ D FM+RV+ DA+WSL C
Sbjct: 293 RKGAFAIYLEPWHSDIFDFLDLRKNHGKEEIRARDLFLGLWVNDLFMQRVKDDAEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  +GL+D WGE+F+ LY KYE EG
Sbjct: 353 PNEAQGLADVWGEEFNQLYTKYEREG 378



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 69/101 (68%), Gaps = 9/101 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI+MRLPF+  E++ LN++IFETIY+ A+  S E+A  +G Y+TYEGSP+S
Sbjct: 504 LGVQGLADAFIKMRLPFESEEAKNLNREIFETIYFAAMTCSMELAKVEGTYETYEGSPIS 563

Query: 653 QGILQYDMW--------GVTPTD-LWDWAALKVLALVYGLK 684
           +GI Q++ W        G T T   WDW  L+   L +G++
Sbjct: 564 KGIFQHEFWTREGEPFEGKTITSGRWDWEGLRQQVLQHGVR 604



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAI+++QIETG PYMLYKD+CNRKSNQQNL  I+
Sbjct: 388 ELWFAIIEAQIETGVPYMLYKDSCNRKSNQQNLGTIK 424



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 36/54 (66%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +L N ++  T   +P+IS++ + ++  N D L+ AI  +RDF +++FG+K
Sbjct: 95  EVVHDLRNFIHPRTNLPSPLISEEVFNVVAANVDVLDQAIKSERDFQFDYFGYK 148


>gi|219110871|ref|XP_002177187.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217411722|gb|EEC51650.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 814

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/472 (62%), Positives = 390/472 (82%), Gaps = 4/472 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH D+F FL+L+KN G E  RARDLF+ +W+PD FM+RV+ +  WSL+C
Sbjct: 295 RKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMKRVKDNGTWSLLC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D +G++F+ LY++YE EGK  + + A++LWFAILDSQ+ETGTPYML+KD CN
Sbjct: 355 PNECPGLADCFGDEFEALYERYEREGKVRQTIKAQQLWFAILDSQVETGTPYMLFKDHCN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQQNLGTIKCSNLCTEIVEYT+ DE AVCNLASI+L+  + P       +++F KL+
Sbjct: 415 RKSNQQNLGTIKCSNLCTEIVEYTAPDEAAVCNLASISLSKLVVPGQYGQGGSFDFEKLR 474

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +V+ +VTKNLN+IID NFYP+EEAR SNMRHRPIGIGVQGLAD F  +R+PFD  E+R L
Sbjct: 475 EVSGVVTKNLNRIIDRNFYPIEEARRSNMRHRPIGIGVQGLADCFQMLRIPFDSPEARKL 534

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFETIY+GA  ASC++AA DG Y++Y GSP S+G LQ+D+W V P++ WDWA+LK K
Sbjct: 535 NTDIFETIYFGACTASCDLAAVDGHYESYPGSPSSKGQLQFDLWNVQPSNRWDWASLKAK 594

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           IA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF VVN HLLR+L  
Sbjct: 595 IAEHGIRNSLLVAPMPTASTAQILGNNESTEPFTSNMYNRRVLAGEFTVVNKHLLRELTA 654

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
            G+W +N+++++I  NGSIQ++  IP ++++++KTVWEIPQ+ +LDMAADR  +I QSQS
Sbjct: 655 RGIWTENVRNRIIAENGSIQNVPEIPVEIREIFKTVWEIPQRAILDMAADRAPYICQSQS 714

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           LN+++A+ N  K++SMHF+ W+ GLKTGMYYLRT+P A+AI+FT+D+ ++ +
Sbjct: 715 LNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLRTRPKADAIKFTVDQEQLVS 766



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 165/194 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W V P++ WDWA+LK KIA+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y
Sbjct: 573 LQFDLWNVQPSNRWDWASLKAKIAEHGIRNSLLVAPMPTASTAQILGNNESTEPFTSNMY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN HLLR+L   G+W +N+++++I  NGSIQ++  IP ++++++KTVWE
Sbjct: 633 NRRVLAGEFTVVNKHLLRELTARGIWTENVRNRIIAENGSIQNVPEIPVEIREIFKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LDMAADR  +I QSQSLN+++A+ N  K++SMHF+ W+ GLKTGMYYLRT+P A
Sbjct: 693 IPQRAILDMAADRAPYICQSQSLNVHIADPNSKKLTSMHFYAWQKGLKTGMYYLRTRPKA 752

Query: 949 NAIQFTIDKTKMAN 962
           +AI+FT+D+ ++ +
Sbjct: 753 DAIKFTVDQEQLVS 766



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 69/88 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH D+F FL+L+KN G E  RARDLF+ +W+PD FM+RV+ +  WSL+C
Sbjct: 295 RKGSIAIYLEPWHADVFAFLDLRKNHGNESDRARDLFFAMWVPDLFMKRVKDNGTWSLLC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL+D +G++F+ LY++YE EG V
Sbjct: 355 PNECPGLADCFGDEFEALYERYEREGKV 382



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 90/140 (64%), Gaps = 5/140 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  +R+PFD  E+R LN  IFETIY+GA  ASC++AA DG Y++Y GSP S
Sbjct: 510 IGVQGLADCFQMLRIPFDSPEARKLNTDIFETIYFGACTASCDLAAVDGHYESYPGSPSS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK-- 710
           +G LQ+D+W V P++ WDWA+LK     +G++   ++L + + T +   +  +  + +  
Sbjct: 570 KGQLQFDLWNVQPSNRWDWASLKAKIAEHGIR--NSLLVAPMPTASTAQILGNNESTEPF 627

Query: 711 -SNQQNLEVIEELYNMVNKE 729
            SN  N  V+   + +VNK 
Sbjct: 628 TSNMYNRRVLAGEFTVVNKH 647



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KV   +   +LWFAILDSQ+ETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 381 KVRQTIKAQQLWFAILDSQVETGTPYMLFKDHCNRKSNQQNLGTIK 426



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++Q    GVT ++L + AA +  A        ++IL +++       L+K    R 
Sbjct: 41  ISQKVIQGVYPGVTTSELDELAA-QTAASFATQHPDYSILAARVSVSN---LHKMTIARF 96

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +++E  YN  + +TG    +IS++ Y+I+ K+ D L+ AI++ RDF Y++FGFK
Sbjct: 97  S-----DLVEVFYNYKHPKTGEPASLISEEVYQIVQKHKDELDGAIVHARDFEYDYFGFK 151


>gi|323098671|gb|ADX22908.1| large subunit of ribonucleotide reductase protein [Monkeypox virus]
          Length = 771

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/465 (66%), Positives = 382/465 (82%), Gaps = 3/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD F  +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRT PA+  IQFT+DK K
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPASAPIQFTLDKDK 754



 Score =  285 bits (728), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/191 (67%), Positives = 164/191 (85%), Gaps = 1/191 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRT PA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTXPAS 743

Query: 949 NAIQFTIDKTK 959
             IQFT+DK K
Sbjct: 744 APIQFTLDKDK 754



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 74/104 (71%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD F  +  PFD  E++ LNK+IFETIYYGALEASC++A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFXLLNYPFDSPEAQDLNKKIFETIYYGALEASCKLAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTYGLR 593



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+F FK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFXFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|71027825|ref|XP_763556.1| ribonucleotide-diphosphate reductase large subunit [Theileria parva
           strain Muguga]
 gi|68350509|gb|EAN31273.1| ribonucleotide-diphosphate reductase large subunit, putative
           [Theileria parva]
          Length = 898

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/465 (65%), Positives = 382/465 (82%), Gaps = 1/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 350 RKGSFAIYLEPWHADIFKLLDLRKNHGAEDQRARDLFYALWIPDLFMKRVEANKNWTLMC 409

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL + WG++F+ LY +YE +G   + +PA+KLWFAIL SQIETGTPYMLYKDACN
Sbjct: 410 PDECRGLHEVWGDEFERLYTQYEQQGLGRKTIPAQKLWFAILQSQIETGTPYMLYKDACN 469

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLC EIV++T+KDEVAVCNLAS+AL  ++N   +T++F KL ++ +
Sbjct: 470 AKSNQQNLGTIKSSNLCCEIVQFTNKDEVAVCNLASVALPKFVNTQTRTFDFKKLYEICR 529

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLNK+ID N+YPV++AR SN RHRP+G+GVQGLAD F+ MR PF+ +E+R LNK+I
Sbjct: 530 VITYNLNKVIDRNYYPVKQARVSNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRI 589

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY  L  S ++A + G Y+TYEGSP S+G+LQ+D+WG      LWDW  LK  + +
Sbjct: 590 FETMYYACLSESIDLARQLGTYETYEGSPASKGLLQFDLWGAKVDNSLWDWDKLKADLRE 649

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSL IAPMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL DL+ELGL
Sbjct: 650 HGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIELGL 709

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ MK +LI  NGS++ I+ IPQ +KDLYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 710 WNETMKQKLIAYNGSLKHIDEIPQHIKDLYKTVWEIKQKHIIDMAADRGIFIDQSQSLNI 769

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +M +  ++K++SMHF+GWK GLKTG+YYLRT+PA +AI+FT+D +
Sbjct: 770 HMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDAS 814



 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 158/191 (82%), Gaps = 1/191 (0%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG      LWDW  LK  + +HG+RNSL IAPMPTAST+QILGNNESFEPYTSNI
Sbjct: 624 LQFDLWGAKVDNSLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNI 683

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL+ELGLW++ MK +LI  NGS++ I+ IPQ +KDLYKTVW
Sbjct: 684 YYRRVLSGEFFVVNPHLLNDLIELGLWNETMKQKLIAYNGSLKHIDEIPQHIKDLYKTVW 743

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNI+M +  ++K++SMHF+GWK GLKTG+YYLRT+PA
Sbjct: 744 EIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPA 803

Query: 948 ANAIQFTIDKT 958
            +AI+FT+D +
Sbjct: 804 TDAIKFTVDAS 814



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 350 RKGSFAIYLEPWHADIFKLLDLRKNHGAEDQRARDLFYALWIPDLFMKRVEANKNWTLMC 409

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL + WG++F+ LY +YE +GL
Sbjct: 410 PDECRGLHEVWGDEFERLYTQYEQQGL 436



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF+ +E+R LNK+IFET+YY  L  S ++A + G Y+TYEGSP S
Sbjct: 561 VGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQLGTYETYEGSPAS 620

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           +G+LQ+D+WG      LWDW  LK     +GL+
Sbjct: 621 KGLLQFDLWGAKVDNSLWDWDKLKADLREHGLR 653



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 6/52 (11%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE------ELYNMVNKE 729
           KLWFAIL SQIETGTPYMLYKDACN KSNQQNL  I+      E+    NK+
Sbjct: 445 KLWFAILQSQIETGTPYMLYKDACNAKSNQQNLGTIKSSNLCCEIVQFTNKD 496



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  L++       T   +ISD  +E +M N DRLN+ I Y RDF Y++FGFK
Sbjct: 154 EVIRTLHS-YKHVFNTNASLISDDVFEFVMANKDRLNAEIDYSRDFQYDYFGFK 206


>gi|323305248|gb|EGA58995.1| Rnr1p [Saccharomyces cerevisiae FostersB]
          Length = 888

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/467 (64%), Positives = 381/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY  ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYXASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY  ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYXASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGIR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|254580061|ref|XP_002496016.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
 gi|238938907|emb|CAR27083.1| ZYRO0C08514p [Zygosaccharomyces rouxii]
          Length = 921

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/473 (64%), Positives = 385/473 (81%), Gaps = 4/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +GE+F+ LY++YE EG+  + + A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLADVYGEEFEKLYERYEQEGRGRKTIRAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA----DKTYNFTKLK 266
            KSNQ+NLG IK SNLC EIVEY+ KDE A CNLASIAL   +  +    ++ Y+F KL 
Sbjct: 413 EKSNQKNLGVIKSSNLCCEIVEYSDKDETAACNLASIALPSCVEVSADGKEQWYSFAKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +VAK +T+NLNK+ID N+YPV EA+ SNMRHRPI +GV GLAD F+ +RLPF+  E+++L
Sbjct: 473 EVAKAITRNLNKVIDRNYYPVPEAKRSNMRHRPIALGVNGLADTFMMLRLPFESPEAKIL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N+QIFETIY+GALE SCE+A   G Y TYEGSP+SQG+LQ+D+W   P++LWDW  L++ 
Sbjct: 533 NQQIFETIYHGALEQSCELAKIHGTYSTYEGSPISQGLLQFDLWEKNPSELWDWEPLRQG 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HGVRNSLL+APMPTAST+QILG NE FEPYTSN+YSRRVLSGEFQ+VN +LL+DLV+
Sbjct: 593 IKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLKDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD++MK Q+I +NGSIQ+I  IPQ++KDLYKTVWEI Q+ VLDMAADR  FIDQS S
Sbjct: 653 LGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWEISQRHVLDMAADRAVFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           LNI+M      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK   A A
Sbjct: 713 LNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKNVAAQA 765



 Score =  289 bits (740), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   P++LWDW  L++ I +HGVRNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 571 LQFDLWEKNPSELWDWEPLRQGIKEHGVRNSLLVAPMPTASTSQILGYNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LL+DLV+LG+WD++MK Q+I +NGSIQ+I  IPQ++KDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLKDLVDLGIWDESMKQQIITDNGSIQNIPNIPQEIKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ VLDMAADR  FIDQS SLNI+M      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQRHVLDMAADRAVFIDQSHSLNIHMRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKTKMANA 963
            AIQFTIDK   A A
Sbjct: 751 AAIQFTIDKNVAAQA 765



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNEEWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +GE+F+ LY++YE EG
Sbjct: 353 PSEAPGLADVYGEEFEKLYERYEQEG 378



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GV GLAD F+ +RLPF+  E+++LN+QIFETIY+GALE SCE+A   G Y TYEGSP+
Sbjct: 507 ALGVNGLADTFMMLRLPFESPEAKILNQQIFETIYHGALEQSCELAKIHGTYSTYEGSPI 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQ+D+W   P++LWDW  L+     +G++
Sbjct: 567 SQGLLQFDLWEKNPSELWDWEPLRQGIKEHGVR 599



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VI +LY+ VN   G  +PMISD+ + I+M N D LNSAI+YDRDF +N+FGFK
Sbjct: 90  TTKQFSQVISDLYHYVNPANGVHSPMISDEIFNIVMTNKDELNSAIVYDRDFQFNYFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+MLYKDACN KSNQ+NL VI+
Sbjct: 388 KLWYAILEAQTETGTPFMLYKDACNEKSNQKNLGVIK 424


>gi|383875419|pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
           Dgtp
 gi|383875421|pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
           Amppnp And Cdp
          Length = 888

 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/466 (65%), Positives = 381/466 (81%), Gaps = 5/466 (1%)

Query: 92  PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 151
           PGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  P
Sbjct: 294 PGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP 353

Query: 152 NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNR 211
            +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACNR
Sbjct: 354 TSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNR 412

Query: 212 KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLKD 267
           KSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL +
Sbjct: 413 KSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           +AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLLN
Sbjct: 473 IAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ I
Sbjct: 533 IQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDI 592

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+L
Sbjct: 593 MKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDL 652

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS SL
Sbjct: 653 GIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSL 712

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           N+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 713 NLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 153/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 67/85 (78%)

Query: 2   PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 61
           PGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  P
Sbjct: 294 PGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP 353

Query: 62  NACRGLSDSWGEKFDDLYKKYEAEG 86
            +  GLSD +G++F+ LY +YE EG
Sbjct: 354 TSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|388582671|gb|EIM22975.1| hypothetical protein WALSEDRAFT_31633 [Wallemia sebi CBS 633.66]
          Length = 888

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/476 (64%), Positives = 388/476 (81%), Gaps = 2/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RV+ +  W L C
Sbjct: 296 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMQRVQENGDWPLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WG++F++L+ KYE EG+  R V A+KLW++ILDSQ+ETG P+MLYKD  N
Sbjct: 356 PHEAPGLHEVWGKEFEELFFKYEREGRAKRVVKAQKLWYSILDSQVETGGPFMLYKDHAN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  YI   +  ++F +L  V K
Sbjct: 416 AKSNQQNLGTIKNSNLCTEIIEYSAPDEVAVCNLASIALPSYIK--NGQFDFNELHKVTK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN+IIDVN+YPV+EA NSNMRHRPIG+GVQGLAD F  +R PF   E+RLLNKQI
Sbjct: 474 VLTRNLNRIIDVNYYPVKEAYNSNMRHRPIGLGVQGLADAFQLLRFPFSSEEARLLNKQI 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+E+S E+A   G Y++Y GSP S+G LQYD+W VTPT LWDW +LKEK+A+ 
Sbjct: 534 FETIYHAAVESSSELAQEFGVYESYHGSPASKGQLQYDLWNVTPTGLWDWTSLKEKVAQR 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQ+VN  LL+DL + GLW
Sbjct: 594 GLRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLSGEFQIVNPWLLKDLCDRGLW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GS+Q+I  IP  +K+LYKTVWEI QK ++D+AADRGAFIDQSQSLN++
Sbjct: 654 NDTMKNRIIAHGGSVQNISDIPDDIKELYKTVWEISQKVIIDLAADRGAFIDQSQSLNVH 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +A   +A+++SMHF+  + GLKTGMYYLRT+P + AIQFT+DK  +  A A++ ++
Sbjct: 714 LASPTHAQLTSMHFYAHRRGLKTGMYYLRTRPQSAAIQFTVDKQALEEAKATQKSK 769



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 168/202 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W VTPT LWDW +LKEK+A+ G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 568 LQYDLWNVTPTGLWDWTSLKEKVAQRGLRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQ+VN  LL+DL + GLW+D MK+++I + GS+Q+I  IP  +K+LYKTVWE
Sbjct: 628 TRRVLSGEFQIVNPWLLKDLCDRGLWNDTMKNRIIAHGGSVQNISDIPDDIKELYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++D+AADRGAFIDQSQSLN+++A   +A+++SMHF+  + GLKTGMYYLRT+P +
Sbjct: 688 ISQKVIIDLAADRGAFIDQSQSLNVHLASPTHAQLTSMHFYAHRRGLKTGMYYLRTRPQS 747

Query: 949 NAIQFTIDKTKMANAMASKDTR 970
            AIQFT+DK  +  A A++ ++
Sbjct: 748 AAIQFTVDKQALEEAKATQKSK 769



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+RV+ +  W L C
Sbjct: 296 RPGAFAIYLEPWHPDVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMQRVQENGDWPLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WG++F++L+ KYE EG
Sbjct: 356 PHEAPGLHEVWGKEFEELFFKYEREG 381



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F  +R PF   E+RLLNKQIFETIY+ A+E+S E+A   G Y++Y GSP S
Sbjct: 505 LGVQGLADAFQLLRFPFSSEEARLLNKQIFETIYHAAVESSSELAQEFGVYESYHGSPAS 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYD+W VTPT LWDW +LK      GL+
Sbjct: 565 KGQLQYDLWNVTPTGLWDWTSLKEKVAQRGLR 596



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QG+ Q    G+T  +L + AA +  A +      +A+L ++I     +   K A +  
Sbjct: 46  VVQGVHQ----GITTVELDNLAA-ETAAYLTVKHPDYAVLAARIAISNLHKETKKAFS-- 98

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
                  VIE+LYN VN   G   PMISD+ Y+I+MKN + L+SAI+YDRDFNYNFFGFK
Sbjct: 99  ------AVIEDLYNYVNPRNGKPGPMISDETYQIVMKNRNVLDSAILYDRDFNYNFFGFK 152



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   KLW++ILDSQ+ETG P+MLYKD  N KSNQQNL  I+
Sbjct: 386 VVKAQKLWYSILDSQVETGGPFMLYKDHANAKSNQQNLGTIK 427


>gi|224096482|ref|XP_002310626.1| predicted protein [Populus trichocarpa]
 gi|222853529|gb|EEE91076.1| predicted protein [Populus trichocarpa]
          Length = 812

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/523 (61%), Positives = 401/523 (76%), Gaps = 25/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG++F++LY +YE +GK  + V A+ LWF IL SQIETGTPYML+KD CN
Sbjct: 353 PSEAPGLADCWGKEFEELYTRYERDGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPAD---- 257
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++         +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREMGVPIESHPSKVVGS 472

Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
                + ++F KL +V  +VT NLNKIIDVN+YPVE AR SN RHRPIGIGVQGLAD F+
Sbjct: 473 RGSNRRYFDFEKLAEVTGVVTVNLNKIIDVNYYPVETARRSNFRHRPIGIGVQGLADAFM 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+AS EIAAR+GPY+TY GSPVS+GILQ DMWGV
Sbjct: 533 LLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+ LW+W AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSSLWNWDALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+Q I  I   LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEISDDLKCIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG FIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQ-EEIQADQEQAMAAMICRRDNKEDCIG 594
            +        K+ + + ++  A  +  +A M+C   N+E+C+ 
Sbjct: 773 TSVF------KEKKPELDDDAAADDTKIAQMVCSLTNREECMA 809



 Score =  282 bits (721), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 134/227 (59%), Positives = 175/227 (77%), Gaps = 7/227 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+ LW+W AL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSSLWNWDALREMISKNGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q I  I   LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPALKNKIIYEDGSVQKIPEISDDLKCIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG FIDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 708 KTLVDMAVDRGCFIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSQAAADAI 767

Query: 952 QFTIDKTKMANAMASKDTRSQ-EEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D +        K+ + + ++  A  +  +A M+C   N+E+C+
Sbjct: 768 KFTVDTSVF------KEKKPELDDDAAADDTKIAQMVCSLTNREECM 808



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D WG++F++LY +YE +G
Sbjct: 353 PSEAPGLADCWGKEFEELYTRYERDG 378



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/157 (45%), Positives = 97/157 (61%), Gaps = 10/157 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ + + FD  E++ LNK IFETIYY AL+AS EIAAR+GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFMLLGMAFDSPEAQKLNKDIFETIYYHALKASSEIAAREGPYETYVGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR--K 710
           +GILQ DMWGVTP+ LW+W AL+ +    G++    +L       T  +L  + C     
Sbjct: 582 KGILQPDMWGVTPSSLWNWDALREMISKNGVRNSL-LLAPMPTASTSQILGNNECFEPYT 640

Query: 711 SNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
           SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 641 SNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPALKNK 677



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 49/63 (77%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +++   E I+ +YN  N+++G + P+I+D  YEIIMKNA RL+S IIYDRDF+Y++F
Sbjct: 87  HKNTHKSFSETIKIMYNHFNEKSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 42/67 (62%), Gaps = 8/67 (11%)

Query: 659 DMWGVTPTDLW-----DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQ 713
           D WG    +L+     D  A KV   V    LWF IL SQIETGTPYML+KD CNRKSNQ
Sbjct: 361 DCWGKEFEELYTRYERDGKAKKV---VQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQ 417

Query: 714 QNLEVIE 720
           QNL  I+
Sbjct: 418 QNLGTIK 424


>gi|444324020|ref|XP_004182650.1| hypothetical protein TBLA_0J01350 [Tetrapisispora blattae CBS 6284]
 gi|387515698|emb|CCH63131.1| hypothetical protein TBLA_0J01350 [Tetrapisispora blattae CBS 6284]
          Length = 886

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/479 (64%), Positives = 388/479 (81%), Gaps = 5/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA AI+LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ +  W+L  
Sbjct: 293 RPGAIAIFLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVKENGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F+ LY +Y  EGK  + + A+KLW++IL++Q ETGTP++ YKDA N
Sbjct: 353 PSEAPGLSDVYGDEFEALYNRYVEEGKGRKTIKAQKLWYSILEAQTETGTPFICYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA----DKTYNFTKLK 266
           +KSNQ+NLGTIK SNLC EI+EY++ DE AVCNLAS+AL  +I  A     +TYNF KL 
Sbjct: 413 KKSNQKNLGTIKSSNLCCEIIEYSAPDETAVCNLASVALPAFIETAADGTTQTYNFQKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           DV K++T+NLNK+ID ++YPV EARNSNMRHRPI +G+QGLAD +  +R+PF+ + ++ L
Sbjct: 473 DVCKVITRNLNKVIDRSYYPVPEARNSNMRHRPIALGIQGLADTYQLLRIPFESDRAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+ +LEASCE+A  DGPY +YEGSPVSQGILQYDMW V PTDLWDW +LK K
Sbjct: 533 NIHIFETLYHASLEASCELAEVDGPYSSYEGSPVSQGILQYDMWNVKPTDLWDWDSLKAK 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL++APMPTAST+QILG NE FEP+TSN+YSRR LSGEFQVVN +LLRDLV+
Sbjct: 593 IKKHGVRNSLVLAPMPTASTSQILGYNECFEPFTSNMYSRRTLSGEFQVVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  LI +NGSIQ++  IPQ+LK+LYKTVWEI QK ++D+AADR AFIDQS S
Sbjct: 653 LGVWDDAMKQHLITDNGSIQNLPNIPQELKELYKTVWEISQKKIIDLAADRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LNI++      K++SMHF+GW+ GLKTGMYYLRT+ A+ AIQFTIDK K+A+   +K A
Sbjct: 713 LNIHIQAPTMGKLTSMHFYGWQKGLKTGMYYLRTQAASAAIQFTIDK-KVADQAGNKVA 770



 Score =  294 bits (752), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 166/199 (83%), Gaps = 1/199 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PTDLWDW +LK KI KHGVRNSL++APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQYDMWNVKPTDLWDWDSLKAKIKKHGVRNSLVLAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR LSGEFQVVN +LLRDLV+LG+WDD MK  LI +NGSIQ++  IPQ+LK+LYKTVWE
Sbjct: 631 SRRTLSGEFQVVNPYLLRDLVDLGVWDDAMKQHLITDNGSIQNLPNIPQELKELYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++D+AADR AFIDQS SLNI++      K++SMHF+GW+ GLKTGMYYLRT+ A+
Sbjct: 691 ISQKKIIDLAADRSAFIDQSHSLNIHIQAPTMGKLTSMHFYGWQKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKTKMANAMASK 967
            AIQFTIDK K+A+   +K
Sbjct: 751 AAIQFTIDK-KVADQAGNK 768



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD +  +R+PF+ + ++ LN  IFET+Y+ +LEASCE+A  DGPY +YEGSPVS
Sbjct: 508 LGIQGLADTYQLLRIPFESDRAKELNIHIFETLYHASLEASCELAEVDGPYSSYEGSPVS 567

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYDMW V PTDLWDW +LK     +G++
Sbjct: 568 QGILQYDMWNVKPTDLWDWDSLKAKIKKHGVR 599



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA AI+LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RV+ +  W+L  
Sbjct: 293 RPGAIAIFLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVKENGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G++F+ LY +Y  EG
Sbjct: 353 PSEAPGLSDVYGDEFEALYNRYVEEG 378



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +AIL +++       L+K      
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETAAYMTTVHPDYAILAARLAISN---LHKQTTKVF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           SN     +IE+LYN VN       P+I+   YE +M N D +NSAI+YDRDF +N+FG+K
Sbjct: 95  SN-----LIEQLYNYVNPSNNQPAPLIAKDVYETVMANRDEINSAIVYDRDFQFNYFGYK 149



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP++ YKDA N+KSNQ+NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFICYKDAANKKSNQKNLGTIK 424


>gi|17974978|ref|NP_536492.1| I4L [Monkeypox virus Zaire-96-I-16]
 gi|17529845|gb|AAL40523.1|AF380138_65 I4L [Monkeypox virus Zaire-96-I-16]
          Length = 771

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/466 (66%), Positives = 383/466 (82%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  L + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPRLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCKLAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++V+ GSIQ+   +P+ +K +YKT+WEI QKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIAQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  284 bits (726), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEHLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++V+ GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IAQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 63/85 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L + WG++F+ LY  YE E
Sbjct: 353 PDECPRLDNVWGDEFERLYTLYERE 377



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASC++A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSPEAQDLNKKIFETIYYGALEASCKLAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEHLKDKIRTYGLR 593



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|255724148|ref|XP_002547003.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240134894|gb|EER34448.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 865

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/465 (65%), Positives = 382/465 (82%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +G++F++LY +YE E +  + + A+KLW+AIL +Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLSDVYGDEFEELYTRYEKENRGRQTIKAQKLWYAILSAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
            K+NQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++  + ++  YNF KL +V
Sbjct: 413 TKTNQKNLGVIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEHDESNTWYNFEKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N+YPV EA  SNMRHRPI +GVQGLAD F+ +RLPFD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNYYPVPEAERSNMRHRPIALGVQGLADAFMSLRLPFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+E+S E+AA +G Y++Y GSP SQG+LQ+D+W   PT+LWDW  LK+K+A
Sbjct: 533 QIFETIYHAAVESSIELAAEEGVYESYPGSPASQGLLQFDLWNRKPTELWDWDTLKQKMA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 IWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 757



 Score =  290 bits (742), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWNRKPTELWDWDTLKQKMAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGIWNDAMKSNIISNNGSIQGLPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 749 AAIQFTIDK 757



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GLSD +G++F++LY +YE E
Sbjct: 353 PNEAPGLSDVYGDEFEELYTRYEKE 377



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ A+E+S E+AA +G Y++Y GSP 
Sbjct: 505 ALGVQGLADAFMSLRLPFDSQEARELNIQIFETIYHAAVESSIELAAEEGVYESYPGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQ+D+W   PT+LWDW  LK     +GL+
Sbjct: 565 SQGLLQFDLWNRKPTELWDWDTLKQKMAKHGLR 597



 Score = 82.8 bits (203), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GVT  +L + AA ++ A +  +   +A+L ++I            
Sbjct: 35  EPVAITQKVISGVYQGVTTIELDNLAA-EIAATMTTVHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V + LY  VN +TG  +PMIS + Y+IIM++ D LNSAI+YDRDFNYN+
Sbjct: 86  LHKQTTKQYSKVSQALYEYVNPKTGLHSPMISKETYDIIMEHEDELNSAIVYDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+MLYKDACN K+NQ+NL VI+
Sbjct: 388 KLWYAILSAQTETGTPFMLYKDACNTKTNQKNLGVIK 424


>gi|403222932|dbj|BAM41063.1| ribonucleoside-diphosphate reductase large chain [Theileria
           orientalis strain Shintoku]
          Length = 877

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/465 (65%), Positives = 379/465 (81%), Gaps = 1/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 340 RKGSFAIYLEPWHADIFKLLDLRKNHGSEDLRARDLFYALWIPDLFMKRVEENKNWTLMC 399

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL + WGE+F+ LY  YE +G   + VPA+KLWFAIL SQIETGTPYMLYKDACN
Sbjct: 400 PDECRGLYEVWGEEFEKLYTHYEQQGMGKKTVPAQKLWFAILQSQIETGTPYMLYKDACN 459

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLC EIV+YTSKDEVAVCNLAS+AL  +++   KT++F KL D+ +
Sbjct: 460 AKSNQQNLGTIKSSNLCCEIVQYTSKDEVAVCNLASVALPKFVDKEKKTFDFKKLYDICR 519

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLN++ID N+YPV EAR SN +HRP+G+GVQGLAD F+ MR PF+  E+R LN++I
Sbjct: 520 VITYNLNQVIDRNYYPVREARVSNFKHRPMGVGVQGLADTFMLMRYPFESEEARELNRRI 579

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY  L  S ++A + G Y++Y GSP S+G+LQ+D+WG       WDW  LK+ +AK
Sbjct: 580 FETMYYACLSESIDLARQYGTYESYPGSPASKGLLQFDLWGAKVDNKYWDWDLLKQNLAK 639

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVL GEF VVN HLL DL+ELGL
Sbjct: 640 YGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLCGEFFVVNPHLLNDLIELGL 699

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++NMK +LI  NGS++ I+ +PQ +KDLYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 700 WNENMKQKLIAYNGSLKYIDEVPQHIKDLYKTVWEIKQKHIIDMAADRGVFIDQSQSLNI 759

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +M +  ++K++SMHF+GWK GLKTG+YYLRT+PA +AI+FT+D +
Sbjct: 760 HMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDAS 804



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 136/233 (58%), Positives = 172/233 (73%), Gaps = 15/233 (6%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG       WDW  LK+ +AK+G+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 614 LQFDLWGAKVDNKYWDWDLLKQNLAKYGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 673

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVL GEF VVN HLL DL+ELGLW++NMK +LI  NGS++ I+ +PQ +KDLYKTVW
Sbjct: 674 YYRRVLCGEFFVVNPHLLNDLIELGLWNENMKQKLIAYNGSLKYIDEVPQHIKDLYKTVW 733

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNI+M +  ++K++SMHF+GWK GLKTG+YYLRT+PA
Sbjct: 734 EIKQKHIIDMAADRGVFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPA 793

Query: 948 ANAIQFTIDKT--------------KMANAMASKDTRSQEEIQADQEQAMAAM 986
            +AI+FT+D +              + A  M S  T S  E   +  Q M +M
Sbjct: 794 TDAIKFTVDASVSQLAKNRAKGATVERAPGMMSDGTVSTTETVEEPVQQMTSM 846



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE +  W+LMC
Sbjct: 340 RKGSFAIYLEPWHADIFKLLDLRKNHGSEDLRARDLFYALWIPDLFMKRVEENKNWTLMC 399

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL + WGE+F+ LY  YE +G+
Sbjct: 400 PDECRGLYEVWGEEFEKLYTHYEQQGM 426



 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF+  E+R LN++IFET+YY  L  S ++A + G Y++Y GSP S
Sbjct: 551 VGVQGLADTFMLMRYPFESEEARELNRRIFETMYYACLSESIDLARQYGTYESYPGSPAS 610

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           +G+LQ+D+WG       WDW  LK     YGL+
Sbjct: 611 KGLLQFDLWGAKVDNKYWDWDLLKQNLAKYGLR 643



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 658 YDMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           Y++WG     L+     + +    V   KLWFAIL SQIETGTPYMLYKDACN KSNQQN
Sbjct: 407 YEVWGEEFEKLYTHYEQQGMGKKTVPAQKLWFAILQSQIETGTPYMLYKDACNAKSNQQN 466

Query: 716 LEVIE 720
           L  I+
Sbjct: 467 LGTIK 471



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 736 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +IS+  Y  +M + DR N+ I Y RDF Y++FGFK
Sbjct: 162 LISEDVYNFVMMHKDRFNAEIDYSRDFQYDYFGFK 196


>gi|255037023|ref|YP_003087644.1| ribonucleoside-diphosphate reductase subunit alpha [Dyadobacter
           fermentans DSM 18053]
 gi|254949779|gb|ACT94479.1| ribonucleoside-diphosphate reductase, alpha subunit [Dyadobacter
           fermentans DSM 18053]
          Length = 814

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/517 (61%), Positives = 400/517 (77%), Gaps = 15/517 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 293 RKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVEANDTWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D+  E+F+ LY++YE EG+  + + A+ LWFAI++SQIETGTPYMLYKD  N
Sbjct: 353 PHECPGLADTHSEEFEKLYEQYEREGRARKTIKAQDLWFAIMESQIETGTPYMLYKDHAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTYNF--TKLKD 267
            KSNQQNLGTIK SNLCTEI+EYT+ DEVAVCNLASIAL  ++   AD   +F   KL +
Sbjct: 413 SKSNQQNLGTIKSSNLCTEIIEYTAPDEVAVCNLASIALPKFVEQGADGFMHFDHQKLYE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+VT+NLNKIID+NFYPV EA  SN RHRPIGIGVQGLAD F  MR+PFD +E+R LN
Sbjct: 473 ITKVVTRNLNKIIDLNFYPVPEAEKSNKRHRPIGIGVQGLADAFCMMRMPFDSDEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           K IFETIYYG++EAS E+A ++GPY+T+ GSP+SQG+ Q+DMW VTP +  W+W  L+++
Sbjct: 533 KDIFETIYYGSMEASMELAMQNGPYETWAGSPISQGVFQFDMWNVTPESKRWNWEKLRKE 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + ++GVRNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +LL+DLV 
Sbjct: 593 VVQNGVRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFVVVNKYLLKDLVR 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW + MK+ L+  +GS+Q I  IPQ +KDLYKT WEI Q+++LDM+ADRGA+I QSQS
Sbjct: 653 LGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLYKTAWEIKQRSLLDMSADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT---KMANAMASK 563
           LNI+M E N+ K++SMHF+ WK GLKTGMYYLRT+ A++ +QFT+ K    ++  A A  
Sbjct: 713 LNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLRTRAASDPVQFTVSKQAEPQLEPATAVV 772

Query: 564 DARSQEEIQADQEQAMAA--------MICRRDNKEDC 592
             +    +Q  +E A  A        M C  D+ E C
Sbjct: 773 AEKELNYVQYAEEHAKPAAPRDNRSDMQCSLDDPEGC 809



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 133/240 (55%), Positives = 175/240 (72%), Gaps = 12/240 (5%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW VTP +  W+W  L++++ ++GVRNSLL+APMPTAST+QILGNNE FEP+TSNI
Sbjct: 570 FQFDMWNVTPESKRWNWEKLRKEVVQNGVRNSLLLAPMPTASTSQILGNNECFEPFTSNI 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN +LL+DLV LGLW + MK+ L+  +GS+Q I  IPQ +KDLYKT W
Sbjct: 630 YVRRVLSGEFVVVNKYLLKDLVRLGLWSEEMKNNLVRASGSVQAIPNIPQNIKDLYKTAW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+++LDM+ADRGA+I QSQSLNI+M E N+ K++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 690 EIKQRSLLDMSADRGAYICQSQSLNIFMEEANFGKLTSMHFYAWKKGLKTGMYYLRTRAA 749

Query: 948 ANAIQFTIDKT---KMANAMASKDTRSQEEIQADQEQAMAA--------MICRRDNKEDC 996
           ++ +QFT+ K    ++  A A    +    +Q  +E A  A        M C  D+ E C
Sbjct: 750 SDPVQFTVSKQAEPQLEPATAVVAEKELNYVQYAEEHAKPAAPRDNRSDMQCSLDDPEGC 809



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY LWIPD FM+RVE++  WSL C
Sbjct: 293 RKGSFAIYIEPWHSDIFDFLDLKKNHGKEEQRARDLFYALWIPDLFMKRVEANDTWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D+  E+F+ LY++YE EG
Sbjct: 353 PHECPGLADTHSEEFEKLYEQYEREG 378



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  MR+PFD +E+R LNK IFETIYYG++EAS E+A ++GPY+T+ GSP+S
Sbjct: 507 IGVQGLADAFCMMRMPFDSDEARRLNKDIFETIYYGSMEASMELAMQNGPYETWAGSPIS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QG+ Q+DMW VTP +  W+W  L+   +  G++
Sbjct: 567 QGVFQFDMWNVTPESKRWNWEKLRKEVVQNGVR 599



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAI++SQIETGTPYMLYKD  N KSNQQNL  I+
Sbjct: 389 LWFAIMESQIETGTPYMLYKDHANSKSNQQNLGTIK 424



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 38/53 (71%)

Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
            ++ LY  ++ +TG    +IS + YE+I +NA  L+S IIYDRD++Y++FG+K
Sbjct: 97  TMKRLYTYIDSKTGENASLISREVYEVIRQNASLLDSTIIYDRDYSYDYFGYK 149


>gi|412993613|emb|CCO14124.1| Ribonucleoside-diphosphate reductase subunit [Bathycoccus prasinos]
          Length = 816

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/545 (59%), Positives = 412/545 (75%), Gaps = 43/545 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE + +W+LMC
Sbjct: 269 RKGAFAIYLEPWHSDIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEENGKWTLMC 328

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS+ WGE+F+ LY KYE E K  + + A++LWFAIL++Q+ETG PYML+KDACN
Sbjct: 329 PNECPGLSECWGEEFEALYTKYEKENKGKKTINAQQLWFAILEAQVETGNPYMLFKDACN 388

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI------NPADKT----- 259
           RKSNQQNLGTIK SNLCTEIVE+TS +E AVCNLASIAL  ++      +P  KT     
Sbjct: 389 RKSNQQNLGTIKSSNLCTEIVEFTSPEETAVCNLASIALPRFVIEKNESSPTGKTETKKL 448

Query: 260 ----------YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLAD 309
                     ++  KL ++ + VT+NLN+IIDVN+YPVE A+ SNM+HRPIG+GVQGLAD
Sbjct: 449 LGSLRASDRYFDHAKLSEITRKVTRNLNRIIDVNYYPVETAKRSNMKHRPIGLGVQGLAD 508

Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369
           +FI + LPFD  E++ LN +IFETIY+ AL+ S E+A  +G Y++YEGSPVS+G+LQ DM
Sbjct: 509 VFILLGLPFDSPEAQKLNAEIFETIYFAALQESNELAKEEGTYESYEGSPVSKGVLQPDM 568

Query: 370 WGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 426
           WGVT     D   W+AL+E IAKHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+R
Sbjct: 569 WGVTEMPGGDRHGWSALRESIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYAR 628

Query: 427 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
           RVLSGEF VVN HLL DL E+GLWD  +K+ LI +NGS+ +++ IP  LK +YKTVWEI 
Sbjct: 629 RVLSGEFTVVNQHLLSDLTEMGLWDPTLKNSLISDNGSVVNLD-IPDNLKAIYKTVWEIK 687

Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           Q+ ++DMAA RGAFIDQSQS N++M++ N  K++S+HFH WK GLKTGMYYLR++ AA+A
Sbjct: 688 QRILVDMAAARGAFIDQSQSFNVHMSDANSGKLTSLHFHAWKSGLKTGMYYLRSRAAADA 747

Query: 547 IQFTIDKTKMANAMASKD-------------ARSQEEI----QADQEQAMAAMI-CRRDN 588
           I+FT+D TK A  +  ++               +++E+    +A+QE  MAA + C  +N
Sbjct: 748 IKFTVDPTKAAKKVEKENVLKPSNGGPKPTAVPTKKEVSEMSEAEQEAHMAAKLKCSLEN 807

Query: 589 KEDCI 593
           K++C+
Sbjct: 808 KDECL 812



 Score =  285 bits (729), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 141/247 (57%), Positives = 183/247 (74%), Gaps = 22/247 (8%)

Query: 772 DMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           DMWGVT     D   W+AL+E IAKHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 DMWGVTEMPGGDRHGWSALRESIAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL E+GLWD  +K+ LI +NGS+ +++ IP  LK +YKTVWE
Sbjct: 627 ARRVLSGEFTVVNQHLLSDLTEMGLWDPTLKNSLISDNGSVVNLD-IPDNLKAIYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAA RGAFIDQSQS N++M++ N  K++S+HFH WK GLKTGMYYLR++ AA
Sbjct: 686 IKQRILVDMAAARGAFIDQSQSFNVHMSDANSGKLTSLHFHAWKSGLKTGMYYLRSRAAA 745

Query: 949 NAIQFTIDKTKMANAMASKD-------------TRSQEEI----QADQEQAMAAMI-CRR 990
           +AI+FT+D TK A  +  ++               +++E+    +A+QE  MAA + C  
Sbjct: 746 DAIKFTVDPTKAAKKVEKENVLKPSNGGPKPTAVPTKKEVSEMSEAEQEAHMAAKLKCSL 805

Query: 991 DNKEDCL 997
           +NK++CL
Sbjct: 806 ENKDECL 812



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 70/85 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFD+L+L+KN GKEE RARDLFYGLW  D FM+RVE + +W+LMC
Sbjct: 269 RKGAFAIYLEPWHSDIFDWLDLRKNHGKEEARARDLFYGLWTNDLFMKRVEENGKWTLMC 328

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GLS+ WGE+F+ LY KYE E
Sbjct: 329 PNECPGLSECWGEEFEALYTKYEKE 353



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI + LPFD  E++ LN +IFETIY+ AL+ S E+A  +G Y++YEGSPVS
Sbjct: 501 LGVQGLADVFILLGLPFDSPEAQKLNAEIFETIYFAALQESNELAKEEGTYESYEGSPVS 560

Query: 653 QGILQYDMWGVTPT---DLWDWAALKVLALVYGLK 684
           +G+LQ DMWGVT     D   W+AL+     +G++
Sbjct: 561 KGVLQPDMWGVTEMPGGDRHGWSALRESIAKHGVR 595



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL++Q+ETG PYML+KDACNRKSNQQNL  I+
Sbjct: 364 QLWFAILEAQVETGNPYMLFKDACNRKSNQQNLGTIK 400



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q + Q    GVT  +L D  A +  A +      +A L ++I             ++ 
Sbjct: 15  VAQKVCQGVYPGVTTAEL-DELAAETAAAMTSKHPDYAQLAARIAVSN--------LHKT 65

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++     ++++Y   N   G  +P+++D  YEII +NA+R ++ I+YDRDF+Y++FGFK
Sbjct: 66  TDKSFSTTMKKMYEHTNHRNGKWSPLLADDVYEIITENAERFDAEIVYDRDFDYDYFGFK 125


>gi|299471069|emb|CBN78928.1| ribonucleotide reductase large chain subunit [Ectocarpus
           siliculosus]
          Length = 653

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/472 (65%), Positives = 386/472 (81%), Gaps = 6/472 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI  FL+LKKN G E  RARDLFY +WIPD FM+RVE+D  W+L C
Sbjct: 146 RKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQRVEADGDWNLFC 205

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-EGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GLSD+  E+F +LY++YEA EG   R + AR LW AIL+SQ+ETGTPYMLYKDAC
Sbjct: 206 PNEAPGLSDTHSEEFKELYEQYEAKEGLSRRTMKARLLWDAILESQVETGTPYMLYKDAC 265

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-----ADKTYNFTK 264
           N KSNQ+NLGTIK SNLCTEIVEYT+ DEVAVCNLASI L+  + P        TY+F K
Sbjct: 266 NFKSNQKNLGTIKSSNLCTEIVEYTAPDEVAVCNLASINLSALVIPPTAETTKATYDFEK 325

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+ ++++VT+NLN++ID N+YP+EEARNSNMRHRPIGIGVQGLAD FI+MRLPF+  E+ 
Sbjct: 326 LQHISEVVTRNLNRVIDANYYPIEEARNSNMRHRPIGIGVQGLADAFIKMRLPFESEEAC 385

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 384
            LN+ IFETIY+GA+ AS E+A   GPY+TY GSP S+G+LQ+D+WGV PT   DWAALK
Sbjct: 386 KLNRDIFETIYFGAVNASVELAKELGPYETYAGSPASEGLLQFDLWGVKPTGRHDWAALK 445

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
            ++A+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y+RRVL+GEF VVN +LLRDL
Sbjct: 446 ARMAEHGLRNSLLVAPMPTASTAQILGNNESVEPFTSNMYNRRVLAGEFTVVNKYLLRDL 505

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
            E GLW   +++Q+I + GS+Q++  IPQ+LKDLYKTVWEI QK +L+ AADRGA+I QS
Sbjct: 506 TERGLWTPEVRNQIIADQGSVQNVRQIPQELKDLYKTVWEIKQKFILNQAADRGAYICQS 565

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           QS+N++MAE ++ K+SSMHF+ WK GLKTGMYYLRT+P A+AIQFT+D++ +
Sbjct: 566 QSMNVHMAEASFGKLSSMHFYAWKKGLKTGMYYLRTRPKADAIQFTVDQSSL 617



 Score =  285 bits (730), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 126/192 (65%), Positives = 164/192 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV PT   DWAALK ++A+HG+RNSLL+APMPTASTAQILGNNES EP+TSN+Y
Sbjct: 426 LQFDLWGVKPTGRHDWAALKARMAEHGLRNSLLVAPMPTASTAQILGNNESVEPFTSNMY 485

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN +LLRDL E GLW   +++Q+I + GS+Q++  IPQ+LKDLYKTVWE
Sbjct: 486 NRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQIIADQGSVQNVRQIPQELKDLYKTVWE 545

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L+ AADRGA+I QSQS+N++MAE ++ K+SSMHF+ WK GLKTGMYYLRT+P A
Sbjct: 546 IKQKFILNQAADRGAYICQSQSMNVHMAEASFGKLSSMHFYAWKKGLKTGMYYLRTRPKA 605

Query: 949 NAIQFTIDKTKM 960
           +AIQFT+D++ +
Sbjct: 606 DAIQFTVDQSSL 617



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 98/158 (62%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI+MRLPF+  E+  LN+ IFETIY+GA+ AS E+A   GPY+TY GSP S
Sbjct: 363 IGVQGLADAFIKMRLPFESEEACKLNRDIFETIYFGAVNASVELAKELGPYETYAGSPAS 422

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK-- 710
           +G+LQ+D+WGV PT   DWAALK     +GL+   ++L + + T +   +  +  + +  
Sbjct: 423 EGLLQFDLWGVKPTGRHDWAALKARMAEHGLR--NSLLVAPMPTASTAQILGNNESVEPF 480

Query: 711 -SNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  N  V+   + +VNK       E G  TP + ++
Sbjct: 481 TSNMYNRRVLAGEFTVVNKYLLRDLTERGLWTPEVRNQ 518



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI  FL+LKKN G E  RARDLFY +WIPD FM+RVE+D  W+L C
Sbjct: 146 RKGSIAVYLEPWHADIVAFLDLKKNHGNELERARDLFYAMWIPDLFMQRVEADGDWNLFC 205

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA-EGL 87
           PN   GLSD+  E+F +LY++YEA EGL
Sbjct: 206 PNEAPGLSDTHSEEFKELYEQYEAKEGL 233



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL+SQ+ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 243 LWDAILESQVETGTPYMLYKDACNFKSNQKNLGTIK 278


>gi|255566650|ref|XP_002524309.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223536400|gb|EEF38049.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 810

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/522 (60%), Positives = 394/522 (75%), Gaps = 25/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV  D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEERRARDLFYALWIPDLFMERVRGDGSWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY  YE   +  + +PARKLWF IL+SQIETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGEEFEKLYTFYEDGDRAKKVIPARKLWFEILNSQIETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQNLGTIK SNLCTE++E+TS  E AVCNLASIAL  ++                 
Sbjct: 413 RKSNQQNLGTIKSSNLCTEVIEFTSPTETAVCNLASIALPRFVRERGVPIGSHSSKLVGS 472

Query: 254 -NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
            +   + ++F KL ++   +T NLNKIID+N+YPV+ AR SN+RHRP+GIGVQGLAD FI
Sbjct: 473 RDSKTRYFDFAKLAEITVTITANLNKIIDINYYPVDTARRSNLRHRPMGIGVQGLADTFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + +PFD  E++ LNK IFETIYY AL++S E+AA DGPY+TY+GSPVS+GILQ DMWGV
Sbjct: 533 LLGMPFDSLEAQQLNKDIFETIYYHALKSSSELAAIDGPYETYKGSPVSKGILQMDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
            P+D WDW  L+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWNVLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  NGS+  +  IP++LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEIGLWSHALKNKIIYENGSVAKVPEIPEQLKAIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA  RG +IDQSQSLNI+M + +  K++S+HF+ W  GLKTGMYYLRT+ AA+AI+FT+D
Sbjct: 713 MAVARGCYIDQSQSLNIHMDQPDLGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVD 772

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + + +   +    + + +  D    MA M+C   N+E+C+ 
Sbjct: 773 TSVLKHENVNS---TNDYVDTD----MAQMVCSLRNREECMA 807



 Score =  283 bits (725), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/229 (57%), Positives = 173/229 (75%), Gaps = 7/229 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMWGV P+D WDW  L+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQMDMWGVIPSDRWDWNVLREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN HLL DL E+GLW   +K+++I  NGS+  +  IP++LK +YKTVWE
Sbjct: 645 SRRVLSGEFVVVNKHLLHDLTEIGLWSHALKNKIIYENGSVAKVPEIPEQLKAIYKTVWE 704

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMA  RG +IDQSQSLNI+M + +  K++S+HF+ W  GLKTGMYYLRT+ AA
Sbjct: 705 IKQKTLVDMAVARGCYIDQSQSLNIHMDQPDLGKLTSLHFYAWSKGLKTGMYYLRTRAAA 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D + + +   +    + + +  D    MA M+C   N+E+C+
Sbjct: 765 DAIKFTVDTSVLKHENVNS---TNDYVDTD----MAQMVCSLRNREECM 806



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 64/83 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV  D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEERRARDLFYALWIPDLFMERVRGDGSWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN   GL+D WGE+F+ LY  YE
Sbjct: 353 PNEAPGLADCWGEEFEKLYTFYE 375



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL++S E+AA DGPY+TY+GSPVS
Sbjct: 522 IGVQGLADTFILLGMPFDSLEAQQLNKDIFETIYYHALKSSSELAAIDGPYETYKGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMWGV P+D WDW  L+ +    G++
Sbjct: 582 KGILQMDMWGVIPSDRWDWNVLREMISKNGVR 613



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +Y+ +NK +G +  +I+D  YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKLMYSHINKRSGQKASLIADDVYEIIMKNATRLDSEIIYDRDFDYDYFGFK 149



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWF IL+SQIETGTPYML+KD+CNRKSNQQNL  I+
Sbjct: 388 KLWFEILNSQIETGTPYMLFKDSCNRKSNQQNLGTIK 424


>gi|260061081|ref|YP_003194161.1| ribonucleoside-diphosphate reductase large chain [Robiginitalea
           biformata HTCC2501]
 gi|88785213|gb|EAR16382.1| probable ribonucleoside-diphosphate reductase large chain
           [Robiginitalea biformata HTCC2501]
          Length = 812

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/468 (66%), Positives = 381/468 (81%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIFDFLELKKN GKEE RARDLFY +WI D FM+RVE+DA+W+LMC
Sbjct: 279 RKGSFAIYLEPWHADIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMC 338

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL  +  E+F++LY KYE EGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 339 PNECPGLYTTHSEEFEELYLKYEKEGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 398

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT++DEVAVCNLASIAL M+I   +  ++  +L  V K
Sbjct: 399 RKSNQKNLGTIRSSNLCTEILEYTAEDEVAVCNLASIALPMFIKNGE--FDHKELFRVTK 456

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID N+YP++EA NSNMRHRPIG+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 457 RVTKNLNRVIDRNYYPIKEAENSNMRHRPIGLGVQGLADTFILLRLPFTSDEAKKLNREI 516

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+YY A  AS E+A  +GPY +YEGSP+SQG  Q+++WG+   +L   WDW  L++ I
Sbjct: 517 FETLYYAAATASMEMAKEEGPYSSYEGSPISQGQFQHNLWGIEDKELSGRWDWEKLRKSI 576

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 577 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSL 636

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++NMK +L+  NGSIQ I+ IP  +K+LY+TVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 637 GLWNENMKQELMRANGSIQHIDAIPDNIKELYQTVWELSMKDIIDMSRQRGYFIDQSQSL 696

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D TK
Sbjct: 697 NLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNTK 744



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 158/194 (81%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++ I K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 551 FQHNLWGIEDKELSGRWDWEKLRKSIKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 610

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW++NMK +L+  NGSIQ I+ IP  +K+LY+T
Sbjct: 611 NIYTRRVLSGEFIVVNKHLLEDLVSLGLWNENMKQELMRANGSIQHIDAIPDNIKELYQT 670

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 671 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTK 730

Query: 946 PAANAIQFTIDKTK 959
            A +AI+FT+D TK
Sbjct: 731 AAVDAIKFTLDNTK 744



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIFDFLELKKN GKEE RARDLFY +WI D FM+RVE+DA+W+LMC
Sbjct: 279 RKGSFAIYLEPWHADIFDFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEADAEWTLMC 338

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL  +  E+F++LY KYE EG
Sbjct: 339 PNECPGLYTTHSEEFEELYLKYEKEG 364



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+YY A  AS E+A  +GPY +YEGSP+S
Sbjct: 488 LGVQGLADTFILLRLPFTSDEAKKLNREIFETLYYAAATASMEMAKEEGPYSSYEGSPIS 547

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WG+   +L   WDW  L+
Sbjct: 548 QGQFQHNLWGIEDKELSGRWDWEKLR 573



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E +++
Sbjct: 36  GVTTSELDNLAA-EIAATLTTTHPDYAKLAARISVSN--------LHKNTKKSFSETMKD 86

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P+++D  +E+I K+AD L+S IIY+RDF Y++FGFK
Sbjct: 87  LYEYVNPRTGKKAPLVADDVFEVIQKHADTLDSMIIYNRDFGYDYFGFK 135



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 374 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 409


>gi|344303185|gb|EGW33459.1| hypothetical protein SPAPADRAFT_60812 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 845

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/465 (66%), Positives = 388/465 (83%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN+GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNSGKEEIRARDLFPALWIPDLFMKRVEQNGEWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D +G++F++LY++YE EG+ ++ V A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLPDVYGDEFEELYERYEREGRGVKTVKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++   +    YNF KL +V
Sbjct: 413 KKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVEKDENHSWYNFEKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N+YPV EARNSNMR+RP+ +GVQGLAD F+ +RLPFD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNYYPVPEARNSNMRNRPVALGVQGLADAFMALRLPFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+E+S E+A  +GPY TYEGSP S+G+LQ+D+W   PT+LWDW  LK+KIA
Sbjct: 533 QIFETIYHAAVESSVELAQEEGPYPTYEGSPASKGLLQFDLWERKPTELWDWDTLKQKIA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN  LLRDLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPFLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W++ MK  +I NNGSIQ +  +P +LK+LYKTVWEI QK ++DMAADR A+IDQSQSLN
Sbjct: 653 IWNEAMKSNIIANNGSIQSLPNVPDELKELYKTVWEISQKHIIDMAADRAAYIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ E    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 IHIKEPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 757



 Score =  292 bits (748), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 132/189 (69%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+KIAKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWERKPTELWDWDTLKQKIAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LLRDLV+LG+W++ MK  +I NNGSIQ +  +P +LK+LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPFLLRDLVDLGIWNEAMKSNIIANNGSIQSLPNVPDELKELYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR A+IDQSQSLNI++ E    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMAADRAAYIDQSQSLNIHIKEPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 749 AAIQFTIDK 757



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 72/97 (74%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ A+E+S E+A  +GPY TYE
Sbjct: 501 NRPVALGVQGLADAFMALRLPFDSQEARELNIQIFETIYHAAVESSVELAQEEGPYPTYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+G+LQ+D+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASKGLLQFDLWERKPTELWDWDTLKQKIAKHGLR 597



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 61/75 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN+GKEE RARDLF  LWIPD FM+RVE + +W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNSGKEEIRARDLFPALWIPDLFMKRVEQNGEWTLFS 352

Query: 61  PNACRGLSDSWGEKF 75
           PN   GL D +G++F
Sbjct: 353 PNEAPGLPDVYGDEF 367



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 77/127 (60%), Gaps = 9/127 (7%)

Query: 644 QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLY 703
           Q  +   ++Q ++     GVT  +L + AA +  A +  +   +AIL ++I         
Sbjct: 32  QHVDAVAITQRVISGVYQGVTTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN----- 85

Query: 704 KDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFN 763
               ++++ +Q  +V +ELY  +N +TG  +PMIS + Y+II+KNAD LNSAI+YDRDF+
Sbjct: 86  ---LHKQTIKQYSQVSKELYEYINPKTGLHSPMISKETYDIIVKNADELNSAIVYDRDFS 142

Query: 764 YNFFGFK 770
           YN+FGFK
Sbjct: 143 YNYFGFK 149



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW++IL++Q ETGTP+MLYKDACN+KSNQ+NL +I+
Sbjct: 384 VKAQKLWYSILEAQTETGTPFMLYKDACNKKSNQKNLGIIK 424


>gi|406672896|ref|ZP_11080121.1| ribonucleoside-diphosphate reductase, alpha subunit [Bergeyella
           zoohelcum CCUG 30536]
 gi|405587440|gb|EKB61168.1| ribonucleoside-diphosphate reductase, alpha subunit [Bergeyella
           zoohelcum CCUG 30536]
          Length = 777

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/504 (61%), Positives = 393/504 (77%), Gaps = 22/504 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DIF+FL+++KN GKEE RARDLF  LWIPD FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHSDIFEFLDIRKNHGKEEMRARDLFPALWIPDLFMQRVETDQMWSLFD 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL D +GEKF++LY  YE EGKF +Q+ AR+LW AIL++QIETGTPYM YKDA N
Sbjct: 353 PNEAQGLYDVYGEKFNELYTTYENEGKFRKQIKARELWTAILEAQIETGTPYMCYKDAVN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  Y+  +DK ++F KL +V K
Sbjct: 413 EKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYV--SDKGFDFQKLYEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNKIID N+YP+ + + SN RHRPIG+GVQGLAD+F+ +RLPF+   +R LNK I
Sbjct: 471 IVTRNLNKIIDGNYYPIPQTKTSNDRHRPIGLGVQGLADVFLLLRLPFESEAARKLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ++EAS E+A   G Y ++ GSP+S+G  Q+D+W + P+D WDW  L+ ++  H
Sbjct: 531 FETIYFASMEASMELAKEQGAYSSFAGSPLSEGKFQFDLWQIAPSDRWDWEKLRNEVMTH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN  LL+DL+ELGLW
Sbjct: 591 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKFLLKDLIELGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +  MK++LI  NGS+Q+I  IP +LK+LYKTVWEI QKT++DMAA+RGAFI QSQSLN++
Sbjct: 651 NPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMAAERGAFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MAE N+AK++SMHFH WK GLKTGMYYLRTK A +AI+FT+D                 +
Sbjct: 711 MAEPNFAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTVDT----------------Q 754

Query: 571 IQADQEQAMAAMICRRDNKEDCIG 594
           I + Q QA     C  DN E+C+ 
Sbjct: 755 ILSGQSQAA----CSLDNPEECLA 774



 Score =  299 bits (765), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 175/229 (76%), Gaps = 20/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W + P+D WDW  L+ ++  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 FQFDLWQIAPSDRWDWEKLRNEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN  LL+DL+ELGLW+  MK++LI  NGS+Q+I  IP +LK+LYKTVWE
Sbjct: 625 NRRVLSGEFVVVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAA+RGAFI QSQSLN++MAE N+AK++SMHFH WK GLKTGMYYLRTK A 
Sbjct: 685 IKQKTIIDMAAERGAFICQSQSLNLFMAEPNFAKLTSMHFHAWKSGLKTGMYYLRTKAAV 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D                 +I + Q QA     C  DN E+CL
Sbjct: 745 DAIKFTVDT----------------QILSGQSQAA----CSLDNPEECL 773



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DIF+FL+++KN GKEE RARDLF  LWIPD FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHSDIFEFLDIRKNHGKEEMRARDLFPALWIPDLFMQRVETDQMWSLFD 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  +GL D +GEKF++LY  YE EG
Sbjct: 353 PNEAQGLYDVYGEKFNELYTTYENEG 378



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 84/138 (60%), Gaps = 3/138 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +RLPF+   +R LNK IFETIY+ ++EAS E+A   G Y ++ GSP+S
Sbjct: 502 LGVQGLADVFLLLRLPFESEAARKLNKDIFETIYFASMEASMELAKEQGAYSSFAGSPLS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR--K 710
           +G  Q+D+W + P+D WDW  L+   + +G++    +L       T  +L  + C     
Sbjct: 562 EGKFQFDLWQIAPSDRWDWEKLRNEVMTHGVRNSL-LLAPMPTASTSQILGNNECFEPYT 620

Query: 711 SNQQNLEVIEELYNMVNK 728
           SN  N  V+   + +VNK
Sbjct: 621 SNIYNRRVLSGEFVVVNK 638



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           F++L ++I       L+K+     S    L     LY   +  T T  P+IS++ Y+II 
Sbjct: 74  FSVLAARIAVSN---LHKNTLKSFSKTAQL-----LYEYTDPITQTHAPLISEEIYKIIR 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           KNAD L+S++IYDRD+N+++FGFK
Sbjct: 126 KNADELDSSLIYDRDYNFDYFGFK 149



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)

Query: 652 SQGILQYDMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR 709
           +QG+  YD++G    +L+       K    +   +LW AIL++QIETGTPYM YKDA N 
Sbjct: 356 AQGL--YDVYGEKFNELYTTYENEGKFRKQIKARELWTAILEAQIETGTPYMCYKDAVNE 413

Query: 710 KSNQQNLEVI 719
           KSNQ+N+  I
Sbjct: 414 KSNQKNIGTI 423


>gi|149248790|ref|XP_001528782.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146448736|gb|EDK43124.1| ribonucleoside-diphosphate reductase large chain 1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 881

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/465 (66%), Positives = 379/465 (81%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIF+F+E++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +GE+F++LY KY AEG+  + + A+KLW++IL+ Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLADCYGEEFEELYNKYVAEGRGRQTIKAQKLWYSILECQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  +I   +    YNF KL DV
Sbjct: 413 AKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFIEQDENKIWYNFEKLHDV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N+YPV EA  SNMRHRPI +GVQGLAD F+ +R+ FD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNYYPVPEAEKSNMRHRPIALGVQGLADAFMVLRIAFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +G Y+TY+GSP SQG+LQ+D+W   PT+LWDW  LK K+A
Sbjct: 533 QIFETIYHAAVEASIELAQEEGAYETYQGSPASQGLLQFDLWNRKPTELWDWDELKAKLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMA+DR AFIDQSQSLN
Sbjct: 653 IWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWEISQKHIIDMASDRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 757



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 160/189 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK K+AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWNRKPTELWDWDELKAKLAKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGIWNDAMKSSIISNNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMA+DR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMASDRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 749 AAIQFTIDK 757



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIF+F+E++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFEFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +GE+F++LY KY AEG
Sbjct: 353 PNEAPGLADCYGEEFEELYNKYVAEG 378



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+ FD  E+R LN QIFETIY+ A+EAS E+A  +G Y+TY+GSP S
Sbjct: 506 LGVQGLADAFMVLRIAFDSQEARELNIQIFETIYHAAVEASIELAQEEGAYETYQGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQ+D+W   PT+LWDW  LK     +GL+
Sbjct: 566 QGLLQFDLWNRKPTELWDWDELKAKLAKHGLR 597



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 46/63 (73%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +Q   V + LY  +N ET   +PMIS + Y+II ++ D LNSAI+YDRDFNYN+F
Sbjct: 87  HKQTTKQYSAVSKILYEYINPETKLHSPMISKETYDIIQEHEDELNSAIVYDRDFNYNYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL+ Q ETGTP+MLYKDACN KSNQ+NL +I+
Sbjct: 388 KLWYSILECQTETGTPFMLYKDACNAKSNQKNLGMIK 424


>gi|387593978|gb|EIJ89002.1| ribonucleoside-diphosphate reductase large subunit [Nematocida
           parisii ERTm3]
          Length = 786

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/504 (62%), Positives = 398/504 (78%), Gaps = 18/504 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+  +Y+EPWH DIFDFL+L+KNTGKEE RAR+LF GLW+PD FM+RVE D  W+L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN  +GL + +G++F++LY +YE E +  ++V PARKLW AIL+++IETG PY+LYKD+C
Sbjct: 356 PNMAKGLHEKYGDEFEELYVQYEKEERVEKKVVPARKLWKAILEAEIETGVPYILYKDSC 415

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           NRKSNQ+NLG IK SNLC EIVEYT  +E+AVCNLAS+AL  YI   +  +NF KLK+VA
Sbjct: 416 NRKSNQKNLGVIKGSNLCAEIVEYTDPNEIAVCNLASLALPTYIE--NNEFNFNKLKEVA 473

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           KIV KNLNKIIDVN YP+E+A+NSNM+HRPIG+GVQGLAD++I +  PF+  E+  LNK 
Sbjct: 474 KIVAKNLNKIIDVNKYPLEQAKNSNMKHRPIGMGVQGLADVYILLGYPFESKEAAELNKA 533

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIY+GALEAS E+A + GPY++Y GSPVS+GILQYDMWGV P+D WDWA LK+KIA 
Sbjct: 534 IFETIYFGALEASNELAQKYGPYESYAGSPVSKGILQYDMWGVQPSDRWDWAGLKKKIAA 593

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+A MPTAST+QILG NE FE +TSNIY+RR LSGEFQ+VN HL+++L +LGL
Sbjct: 594 HGVRNSLLVALMPTASTSQILGFNECFEGFTSNIYTRRTLSGEFQIVNSHLVKNLADLGL 653

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   MK+ +I + GSIQ+I  IP  +K LYKTVWEI QK V+D AADRGA++DQSQS+NI
Sbjct: 654 WGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWEIKQKAVIDQAADRGAYVDQSQSMNI 713

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +++   +A+++SMHF+GWK GLKTG YYLRTKP+  AI+FT+DK            ++QE
Sbjct: 714 HISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQAAIKFTVDKQ-----------QAQE 762

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
            +Q  +E A A   C  D   DC+
Sbjct: 763 YLQ--KESAPAPATCSLDG--DCL 782



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 171/229 (74%), Gaps = 15/229 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV P+D WDWA LK+KIA HGVRNSLL+A MPTAST+QILG NE FE +TSNIY
Sbjct: 569 LQYDMWGVQPSDRWDWAGLKKKIAAHGVRNSLLVALMPTASTSQILGFNECFEGFTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR LSGEFQ+VN HL+++L +LGLW   MK+ +I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 629 TRRTLSGEFQIVNSHLVKNLADLGLWGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D AADRGA++DQSQS+NI+++   +A+++SMHF+GWK GLKTG YYLRTKP+ 
Sbjct: 689 IKQKAVIDQAADRGAYVDQSQSMNIHISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQ 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AI+FT+DK            ++QE +Q  +E A A   C  D   DCL
Sbjct: 749 AAIKFTVDK-----------QQAQEYLQ--KESAPAPATCSLDG--DCL 782



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+  +Y+EPWH DIFDFL+L+KNTGKEE RAR+LF GLW+PD FM+RVE D  W+L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN  +GL + +G++F++LY +YE E
Sbjct: 356 PNMAKGLHEKYGDEFEELYVQYEKE 380



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD++I +  PF+  E+  LNK IFETIY+GALEAS E+A + GPY++Y GSPVS
Sbjct: 506 MGVQGLADVYILLGYPFESKEAAELNKAIFETIYFGALEASNELAQKYGPYESYAGSPVS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWGV P+D WDWA LK     +G++
Sbjct: 566 KGILQYDMWGVQPSDRWDWAGLKKKIAAHGVR 597



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   KLW AIL+++IETG PY+LYKD+CNRKSNQ+NL VI+
Sbjct: 387 VVPARKLWKAILEAEIETGVPYILYKDSCNRKSNQKNLGVIK 428



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + +L N +   T  +T +IS+K  +II+KN +RL+SAI  +RDF +++FG K
Sbjct: 99  EAMMKLSNSIIYGTDLKTEIISEKILDIILKNRERLDSAIKDERDFEFSYFGIK 152


>gi|124003381|ref|ZP_01688231.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
 gi|123991479|gb|EAY30910.1| ribonucleoside-diphosphate reductase, alpha subunit [Microscilla
           marina ATCC 23134]
          Length = 808

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/464 (66%), Positives = 380/464 (81%), Gaps = 3/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+LKKN GKEE RARDLFY +W+ D FM+RVE+D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDDTWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + +GE+F+ LY++YE EG+  + + A+ LWF IL+SQIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLHEVYGEEFEKLYEQYELEGRARKVIKAQDLWFKILESQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EYTSKDEVAVCNLASIAL  ++   D  ++  KL +V +
Sbjct: 413 EKSNQKNLGTIKSSNLCTEIMEYTSKDEVAVCNLASIALPKFV--IDGKFDHQKLYEVTQ 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN+IID+N+YPV+EA NSN+RHRPIGIGVQGLAD F+ +R+PFD  E++ LNK I
Sbjct: 471 VVTRNLNRIIDINYYPVKEAENSNLRHRPIGIGVQGLADTFMMLRMPFDSEEAKGLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ ++ AS E+A ++G Y++Y+GSPVS+GI Q+DMWGV P +  WDW AL++ + K
Sbjct: 531 FETIYFASMTASMELAQKEGAYESYKGSPVSEGIFQFDMWGVKPESGRWDWQALRKDVKK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG RNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLVEL L
Sbjct: 591 HGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLVELNL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W  +M++++   NGS+Q+I  IPQ LKD+YKTVWEI QK V+DMAADRGAFI QSQSLNI
Sbjct: 651 WGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVWEIKQKDVVDMAADRGAFICQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +M    + K++SMHF+ WK GLKTG YYLRTK AA AIQFT++K
Sbjct: 711 HMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAAAKAIQFTVEK 754



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/190 (68%), Positives = 156/190 (82%), Gaps = 1/190 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGV P +  WDW AL++ + KHG RNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDMWGVKPESGRWDWQALRKDVKKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL DLVEL LW  +M++++   NGS+Q+I  IPQ LKD+YKTVW
Sbjct: 625 YTRRVLSGEFVVVNKHLLNDLVELNLWGGDMENRIKAANGSVQNIPEIPQNLKDIYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK V+DMAADRGAFI QSQSLNI+M    + K++SMHF+ WK GLKTG YYLRTK A
Sbjct: 685 EIKQKDVVDMAADRGAFICQSQSLNIHMENPTFGKLTSMHFYAWKKGLKTGTYYLRTKAA 744

Query: 948 ANAIQFTIDK 957
           A AIQFT++K
Sbjct: 745 AKAIQFTVEK 754



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+LKKN GKEE RARDLFY +W+ D FM+RVE+D  WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLKKNHGKEELRARDLFYAMWLSDLFMKRVENDDTWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + +GE+F+ LY++YE EG
Sbjct: 353 PNEAPGLHEVYGEEFEKLYEQYELEG 378



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 67/84 (79%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD  E++ LNK IFETIY+ ++ AS E+A ++G Y++Y+GSPVS
Sbjct: 502 IGVQGLADTFMMLRMPFDSEEAKGLNKDIFETIYFASMTASMELAQKEGAYESYKGSPVS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +GI Q+DMWGV P +  WDW AL+
Sbjct: 562 EGIFQFDMWGVKPESGRWDWQALR 585



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF IL+SQIETGTPYMLYKDA N KSNQ+NL  I+
Sbjct: 389 LWFKILESQIETGTPYMLYKDAANEKSNQKNLGTIK 424



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + ++ELY  ++ +TG +  +ISD+ +  I KNA  L+S+IIYDRD+NY++FGFK
Sbjct: 96  KTMKELYEYIDPKTGEKAGLISDETHAAIQKNAAVLDSSIIYDRDYNYDYFGFK 149


>gi|345107240|ref|YP_004821405.1| ribonucleotide reductase large subunit [Yoka poxvirus]
 gi|344267314|gb|AEN03641.1| ribonucleotide reductase large subunit [Yoka poxvirus]
          Length = 761

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/468 (65%), Positives = 380/468 (81%), Gaps = 3/468 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI DFLELK+N+G EE R RDLF  LWIPD FM RV++D  WSLMC
Sbjct: 284 RPGVMAIYLEPWHADIMDFLELKRNSGNEELRTRDLFIALWIPDIFMTRVKNDEDWSLMC 343

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + +G++F+ LY KYE + K    + AR +W +I++SQIETGTP+MLYKDACN
Sbjct: 344 PNECPGLDNVYGDEFEKLYTKYEHDNKARAVIKARTVWKSIIESQIETGTPFMLYKDACN 403

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+N QNLGTIKC NLC EI++YT+ +EVAVCNLASIALN ++   +  ++F KL+++ K
Sbjct: 404 KKNNHQNLGTIKCGNLCAEIIQYTNPNEVAVCNLASIALNRFV--INNKFDFNKLREIVK 461

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ +NLNKIID+N YP+ EA  SN  HRPIGIGVQGLAD FI +  PF+ +E+R LN +I
Sbjct: 462 IIVRNLNKIIDINKYPLPEAEFSNKTHRPIGIGVQGLADTFILLNYPFESSEARNLNIKI 521

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASCE+A   GPY+TY GSP+S+GILQYD W V P+DLWDW  LK+KI K+
Sbjct: 522 FETIYYSALEASCELAKLYGPYKTYNGSPISKGILQYDFWNVVPSDLWDWKLLKKKIQKY 581

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+A MPTASTAQI GNNES EPYTSNIYSRRVLSGEFQ+VN HLL+ L E  LW
Sbjct: 582 GVRNSLLVASMPTASTAQIFGNNESIEPYTSNIYSRRVLSGEFQIVNPHLLKTLTERKLW 641

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + +K+++I N GSIQ+   +P+ +K +YKTVWEIPQ+ +LDMAADRGAFIDQSQSLNI+
Sbjct: 642 SNELKNKIIENGGSIQN-TNLPEDIKQIYKTVWEIPQRVILDMAADRGAFIDQSQSLNIH 700

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           ++E +Y+K++SMHF+GW LGLKTGMYYLRTK A+N I+FT++K K++N
Sbjct: 701 ISEPSYSKLTSMHFYGWSLGLKTGMYYLRTKSASNPIKFTVEKDKLSN 748



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/194 (67%), Positives = 164/194 (84%), Gaps = 1/194 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD W V P+DLWDW  LK+KI K+GVRNSLL+A MPTASTAQI GNNES EPYTSNIY
Sbjct: 556 LQYDFWNVVPSDLWDWKLLKKKIQKYGVRNSLLVASMPTASTAQIFGNNESIEPYTSNIY 615

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN HLL+ L E  LW + +K+++I N GSIQ+   +P+ +K +YKTVWE
Sbjct: 616 SRRVLSGEFQIVNPHLLKTLTERKLWSNELKNKIIENGGSIQN-TNLPEDIKQIYKTVWE 674

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LDMAADRGAFIDQSQSLNI+++E +Y+K++SMHF+GW LGLKTGMYYLRTK A+
Sbjct: 675 IPQRVILDMAADRGAFIDQSQSLNIHISEPSYSKLTSMHFYGWSLGLKTGMYYLRTKSAS 734

Query: 949 NAIQFTIDKTKMAN 962
           N I+FT++K K++N
Sbjct: 735 NPIKFTVEKDKLSN 748



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 65/85 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI DFLELK+N+G EE R RDLF  LWIPD FM RV++D  WSLMC
Sbjct: 284 RPGVMAIYLEPWHADIMDFLELKRNSGNEELRTRDLFIALWIPDIFMTRVKNDEDWSLMC 343

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL + +G++F+ LY KYE +
Sbjct: 344 PNECPGLDNVYGDEFEKLYTKYEHD 368



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +  PF+ +E+R LN +IFETIYY ALEASCE+A   GPY+TY GSP+S
Sbjct: 493 IGVQGLADTFILLNYPFESSEARNLNIKIFETIYYSALEASCELAKLYGPYKTYNGSPIS 552

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYD W V P+DLWDW  LK     YG++
Sbjct: 553 KGILQYDFWNVVPSDLWDWKLLKKKIQKYGVR 584



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K  A++    +W +I++SQIETGTP+MLYKDACN+K+N QNL  I+
Sbjct: 370 KARAVIKARTVWKSIIESQIETGTPFMLYKDACNKKNNHQNLGTIK 415



 Score = 46.2 bits (108), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 63/120 (52%), Gaps = 18/120 (15%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++  ++Q    GVT  +L D  A ++ +    +   +AIL ++I             +++
Sbjct: 39  IAMKVIQGIYTGVTTKEL-DILAAEISSTCTTIHPDYAILAARISISN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V+E+LY         +  +IS    +++ K+ +R+NS+II D DF+YN+FGFK
Sbjct: 90  TKKIFSDVVEDLY---------KESIISKNVMDVVYKHKERINSSIINDNDFSYNYFGFK 140


>gi|238882110|gb|EEQ45748.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 854

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/465 (65%), Positives = 379/465 (81%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F++LY KYE E +  + + A+KLW+AIL +Q ETGTP+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++   +K+  YNF KL  V
Sbjct: 413 NKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N YPV EA  SNMRHRPI +GVQGLAD F+++RLPFD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +G Y+TY GSP SQG+LQ+D+W   PT+LWDW  LK+ +A
Sbjct: 533 QIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDWDTLKQDLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 VWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 757



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 160/189 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+ +AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWNRKPTELWDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 749 AAIQFTIDQ 757



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D +G++F++LY KYE E
Sbjct: 353 PNEAPGLADVYGDEFEELYTKYEKE 377



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+++RLPFD  E+R LN QIFETIY+ A+EAS E+A  +G Y+TY GSP 
Sbjct: 505 ALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQ+D+W   PT+LWDW  LK     +G++
Sbjct: 565 SQGLLQFDLWNRKPTELWDWDTLKQDLAKHGMR 597



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GVT  +L + AA ++ A +  +   +A+L ++I            
Sbjct: 35  EPVAITQKVISGVYQGVTTIELDNLAA-EIAATMTTIHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V ++LY  +N +TG  +PMIS + Y+IIM++ D LNSAI+YDRDFNYN+
Sbjct: 86  LHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKETYDIIMEHEDELNSAIVYDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+MLYKD+CN KSNQ+NL +I+
Sbjct: 388 KLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGIIK 424


>gi|323449664|gb|EGB05550.1| hypothetical protein AURANDRAFT_30730 [Aureococcus anophagefferens]
          Length = 787

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/496 (61%), Positives = 393/496 (79%), Gaps = 5/496 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 293 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGSWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D  G +F+ LY++YEAEG+  + +PA++LWFAILDSQ+ETGTPYMLYKDACN
Sbjct: 353 PNECPGLADCHGAEFEALYERYEAEGRARKAIPAQQLWFAILDSQVETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD--KTYNFTKLKDV 268
            KSNQ++LGTIK SNLCTEIVEYT+ DE+AVCNLASI L  ++  +    T++F KLK  
Sbjct: 413 GKSNQKHLGTIKSSNLCTEIVEYTAPDEIAVCNLASINLTAHVEGSGDAATFDFAKLKRT 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A +VTKNLNK+IDVN+YPVEEA++SN++HRPIGIGVQG+AD  +++R P++ ++++ +NK
Sbjct: 473 AYVVTKNLNKVIDVNYYPVEEAKSSNLKHRPIGIGVQGMADALVKLRYPYESDDAKRINK 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            +FETIY+GA+EAS ++A   GPY +YEGSP SQG+ Q+D+W V P+D WDW  L+ ++ 
Sbjct: 533 DVFETIYFGAMEASIDLARELGPYDSYEGSPTSQGLFQFDLWNVKPSDRWDWEGLRARLG 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG RNSLL+APMPTASTAQILGNNESFEP+TSN+Y+RRVL+GEF VVN +LL+DL+  G
Sbjct: 593 EHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLLQDLIARG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++Q+I + GS+Q +  IP  LK LYKT WEI QK VLDM+ADRGAFI QSQSLN
Sbjct: 653 LWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWEIKQKCVLDMSADRGAFICQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A+AI FT+D+   A A  S+   + 
Sbjct: 713 LHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFTVDQ---AMAAKSRGGAAL 769

Query: 569 EEIQADQEQAMAAMIC 584
           +     QE+    + C
Sbjct: 770 KPANGQQEEEHECLSC 785



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/220 (57%), Positives = 166/220 (75%), Gaps = 3/220 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L+ ++ +HG RNSLL+APMPTASTAQILGNNESFEP+TSN+Y
Sbjct: 569 FQFDLWNVKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN +LL+DL+  GLW   +++Q+I + GS+Q +  IP  LK LYKT WE
Sbjct: 629 TRRVLAGEFAVVNKYLLQDLIARGLWTSEIRNQIIADKGSVQGVAAIPDDLKALYKTTWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDM+ADRGAFI QSQSLN+++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A
Sbjct: 689 IKQKCVLDMSADRGAFICQSQSLNLHIADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKA 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           +AI FT+D+   A A  S+   + +     QE+    + C
Sbjct: 749 DAIAFTVDQ---AMAAKSRGGAALKPANGQQEEEHECLSC 785



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 293 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGSWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D  G +F+ LY++YEAEG
Sbjct: 353 PNECPGLADCHGAEFEALYERYEAEG 378



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD  +++R P++ ++++ +NK +FETIY+GA+EAS ++A   GPY +YEGSP S
Sbjct: 506 IGVQGMADALVKLRYPYESDDAKRINKDVFETIYFGAMEASIDLARELGPYDSYEGSPTS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+ Q+D+W V P+D WDW  L+     +G +
Sbjct: 566 QGLFQFDLWNVKPSDRWDWEGLRARLGEHGCR 597



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQ+ETGTPYMLYKDACN KSNQ++L  I+
Sbjct: 388 QLWFAILDSQVETGTPYMLYKDACNGKSNQKHLGTIK 424



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++Q    GVT  +L D  A +  A +      F++L ++I             ++ 
Sbjct: 39  ITQKVIQGVYDGVTTHEL-DELAAQTTAYMATQHPDFSVLAARISVSN--------LHKS 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++   +V+E+L+  V+ +T     +ISD+ Y  + K+ D +N+AI+YDRDF Y++FGFK
Sbjct: 90  TDKTFSDVVEKLHKHVHPKTKKPAALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFK 149


>gi|68481362|ref|XP_715320.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
 gi|68481493|ref|XP_715255.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|7271006|emb|CAB77640.1| ribonucleotide reductase large subunit [Candida albicans]
 gi|46436871|gb|EAK96226.1| hypothetical protein CaO19.13201 [Candida albicans SC5314]
 gi|46436939|gb|EAK96293.1| hypothetical protein CaO19.5779 [Candida albicans SC5314]
          Length = 854

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/465 (65%), Positives = 379/465 (81%), Gaps = 2/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F++LY KYE E +  + + A+KLW+AIL +Q ETGTP+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGDEFEELYTKYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++   +K+  YNF KL  V
Sbjct: 413 NKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVENDEKSTWYNFDKLHQV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N YPV EA  SNMRHRPI +GVQGLAD F+++RLPFD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +G Y+TY GSP SQG+LQ+D+W   PT+LWDW  LK+ +A
Sbjct: 533 QIFETIYHAAVEASIELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDWDTLKQDLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 VWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 757



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 129/189 (68%), Positives = 160/189 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+ +AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWNRKPTELWDWDTLKQDLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 749 AAIQFTIDQ 757



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D +G++F++LY KYE E
Sbjct: 353 PNEAPGLADVYGDEFEELYTKYEKE 377



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+++RLPFD  E+R LN QIFETIY+ A+EAS E+A  +G Y+TY GSP 
Sbjct: 505 ALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAAVEASIELAKEEGAYETYPGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQ+D+W   PT+LWDW  LK     +G++
Sbjct: 565 SQGLLQFDLWNRKPTELWDWDTLKQDLAKHGMR 597



 Score = 82.8 bits (203), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 76/124 (61%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GVT  +L + AA ++ A +  +   +A+L ++I            
Sbjct: 35  EPVAITQKVISGVYQGVTTIELDNLAA-EIAATMTTIHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V ++LY  +N +TG  +PMIS + Y+IIM++ D LNSAI+YDRDFNYN+
Sbjct: 86  LHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKETYDIIMEHEDELNSAIVYDRDFNYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+MLYKD+CN KSNQ+NL +I+
Sbjct: 388 KLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGIIK 424


>gi|241951096|ref|XP_002418270.1| ribonucleoside-diphosphate reductase large chain 1, putative;
           ribonucleotide reductase large subunit 1, putative;
           ribonucleotide reductase r1 subunit 1, putative [Candida
           dubliniensis CD36]
 gi|223641609|emb|CAX43570.1| ribonucleoside-diphosphate reductase large chain 1, putative
           [Candida dubliniensis CD36]
          Length = 854

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/471 (64%), Positives = 382/471 (81%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F++LY +YE E +  + + A+KLW+AIL +Q ETGTP+MLYKD+CN
Sbjct: 353 PNEAPGLADVYGDEFEELYTRYEKENRGRQTIKAQKLWYAILGAQTETGTPFMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
            KSNQ+NLG IK SNLC EIVEY++ DEVAVCNLASIAL  ++  + ++  YNF KL DV
Sbjct: 413 NKSNQKNLGIIKSSNLCCEIVEYSAPDEVAVCNLASIALPSFVESDQSNTWYNFDKLHDV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLN++ID N YPV EA  SNMRHRPI +GVQGLAD F+++RLPFD  E+R LN 
Sbjct: 473 TKVVTRNLNRVIDRNHYPVPEAERSNMRHRPIALGVQGLADAFMELRLPFDSQEARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  +G Y+TY GSP SQG+LQ+D+W   PT+LWDW  LK+ +A
Sbjct: 533 QIFETIYHAAVEASVELAKEEGAYETYPGSPASQGLLQFDLWNRKPTELWDWDTLKQNLA 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LL+DLV+LG
Sbjct: 593 KHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLKDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK  +I NNGSIQ +  IP ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 VWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+  +  A
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIVETA 763



 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PT+LWDW  LK+ +AKHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQFDLWNRKPTELWDWDTLKQNLAKHGMRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LL+DLV+LG+W+D MK  +I NNGSIQ +  IP ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLKDLVDLGVWNDAMKSSIIANNGSIQALPNIPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFTID+  +  A
Sbjct: 749 AAIQFTIDQKIVETA 763



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN   GL+D +G++F++LY +YE E
Sbjct: 353 PNEAPGLADVYGDEFEELYTRYEKE 377



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+++RLPFD  E+R LN QIFETIY+ A+EAS E+A  +G Y+TY GSP 
Sbjct: 505 ALGVQGLADAFMELRLPFDSQEARELNIQIFETIYHAAVEASVELAKEEGAYETYPGSPA 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQ+D+W   PT+LWDW  LK     +G++
Sbjct: 565 SQGLLQFDLWNRKPTELWDWDTLKQNLAKHGMR 597



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E   ++Q ++     GVT  +L + AA ++ A +  +   +A+L ++I            
Sbjct: 35  EPVAITQKVISGVYQGVTTIELDNLAA-EIAATMTTIHPDYAVLAARIAVSN-------- 85

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q  +V ++LY  +N +TG  +PMIS + Y+IIM++ D LNSAI+YDRDF+YN+
Sbjct: 86  LHKQTTKQYSKVSKDLYEYINPKTGLHSPMISKETYDIIMEHEDELNSAIVYDRDFSYNY 145

Query: 767 FGFK 770
           FGFK
Sbjct: 146 FGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+MLYKD+CN KSNQ+NL +I+
Sbjct: 388 KLWYAILGAQTETGTPFMLYKDSCNNKSNQKNLGIIK 424


>gi|406025256|ref|YP_006705557.1| ribonucleoside-diphosphate reductase large subunit [Cardinium
           endosymbiont cEper1 of Encarsia pergandiella]
 gi|404432855|emb|CCM10137.1| Ribonucleoside-diphosphate reductase large subunit [Cardinium
           endosymbiont cEper1 of Encarsia pergandiella]
          Length = 778

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/481 (63%), Positives = 394/481 (81%), Gaps = 2/481 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+F+IYLEPWH DIFDFLELKKN GKEE RARDLFYGLWIPD FM RVE+D  WSL C
Sbjct: 293 RKGSFSIYLEPWHADIFDFLELKKNHGKEERRARDLFYGLWIPDLFMERVEADEMWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G  F+  YK+YE EG+    + A+ LWFAIL++QIETGTPYMLYKDA N
Sbjct: 353 PNEAPGLADCYGAAFEQKYKQYEKEGRARTSIKAQTLWFAILEAQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EYT+ DE+AVCNLASIAL M+++  +++++ TKL +V  
Sbjct: 413 EKSNQKNLGTIKSSNLCTEIIEYTAPDEIAVCNLASIALPMFVDD-NRSFDHTKLYEVTY 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLNK+ID N+YP+ EAR SN++HRP+G+GVQGLAD F++MRL FD  E+RLLN++I
Sbjct: 472 LVTKNLNKVIDRNYYPLPEARYSNLKHRPMGLGVQGLADAFLKMRLVFDSPEARLLNQEI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+ AL AS ++A ++G Y++Y GSP+S+GILQ+DMWGVTP+   W+W  L+++IA+
Sbjct: 532 FETIYFAALTASKDLAQKEGVYESYPGSPMSEGILQFDMWGVTPSSGRWNWDHLRKEIAQ 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RN+LL+APMPTAST+QILGNNE FEPYT+NIY+RRVLSGEF VVN +LL DL++LGL
Sbjct: 592 HGIRNALLVAPMPTASTSQILGNNECFEPYTANIYTRRVLSGEFIVVNKYLLADLIQLGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ +K+ LI+ NGSIQ I  IP+ +K +Y+TVWEIPQK+++DMAADR  +I QSQSLN+
Sbjct: 652 WNEEVKEALIIGNGSIQQIACIPEYIKKMYRTVWEIPQKSIIDMAADRAPYICQSQSLNL 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           Y+ +   AK++SMHF+ WK GLKTGMYYLRTK AA+AI+FTI K +  + + S      +
Sbjct: 712 YVKDATMAKLTSMHFYAWKKGLKTGMYYLRTKAAADAIKFTIQKGETVSTLFSGPTEGTQ 771

Query: 570 E 570
           E
Sbjct: 772 E 772



 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/207 (60%), Positives = 168/207 (81%), Gaps = 1/207 (0%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP+   W+W  L+++IA+HG+RN+LL+APMPTAST+QILGNNE FEPYT+NI
Sbjct: 566 LQFDMWGVTPSSGRWNWDHLRKEIAQHGIRNALLVAPMPTASTSQILGNNECFEPYTANI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN +LL DL++LGLW++ +K+ LI+ NGSIQ I  IP+ +K +Y+TVW
Sbjct: 626 YTRRVLSGEFIVVNKYLLADLIQLGLWNEEVKEALIIGNGSIQQIACIPEYIKKMYRTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EIPQK+++DMAADR  +I QSQSLN+Y+ +   AK++SMHF+ WK GLKTGMYYLRTK A
Sbjct: 686 EIPQKSIIDMAADRAPYICQSQSLNLYVKDATMAKLTSMHFYAWKKGLKTGMYYLRTKAA 745

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEE 974
           A+AI+FTI K +  + + S  T   +E
Sbjct: 746 ADAIKFTIQKGETVSTLFSGPTEGTQE 772



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+F+IYLEPWH DIFDFLELKKN GKEE RARDLFYGLWIPD FM RVE+D  WSL C
Sbjct: 293 RKGSFSIYLEPWHADIFDFLELKKNHGKEERRARDLFYGLWIPDLFMERVEADEMWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G  F+  YK+YE EG
Sbjct: 353 PNEAPGLADCYGAAFEQKYKQYEKEG 378



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 73/93 (78%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F++MRL FD  E+RLLN++IFETIY+ AL AS ++A ++G Y++Y GSP+S
Sbjct: 503 LGVQGLADAFLKMRLVFDSPEARLLNQEIFETIYFAALTASKDLAQKEGVYESYPGSPMS 562

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP+   W+W  L+     +G++
Sbjct: 563 EGILQFDMWGVTPSSGRWNWDHLRKEIAQHGIR 595



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL++QIETGTPYMLYKDA N KSNQ+NL  I+
Sbjct: 389 LWFAILEAQIETGTPYMLYKDAANEKSNQKNLGTIK 424



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 41/63 (65%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +++     I+ LY  VN  TGT   +I    Y+I+ ++A  L+ AI+++RDF+Y+FF
Sbjct: 87  HKATSKSFSSTIKRLYTYVNPATGTNASLIDKAIYKIVSEHAATLDDAIVHERDFSYDFF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149


>gi|349578887|dbj|GAA24051.1| K7_Rnr3p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 869

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/518 (59%), Positives = 402/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+  E++ L
Sbjct: 472 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 712 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 770

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 771 VSELDRPVYVPKGTKFSEQKAASALTESSDNEKDASPV 808



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AIQFTID+    + A  +AS     +     +  +  +++A +A+    DN++D 
Sbjct: 750 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDA 805



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREG 378



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 506 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 598



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 149



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+M+YKDACNRK+NQQNL  I+
Sbjct: 387 KLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIK 423


>gi|373447978|gb|AEY73361.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 769

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/466 (66%), Positives = 382/466 (81%), Gaps = 5/466 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET  YGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FET--YGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 589 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 649 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 707

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 708 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 753



 Score =  285 bits (730), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 563 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 623 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 681

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 682 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 741

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 742 APIQFTLDKDKI 753



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 73/104 (70%), Gaps = 2/104 (1%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFET  YGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFET--YGALEASCELAEKE 547

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 548 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 591



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|392575022|gb|EIW68156.1| hypothetical protein TREMEDRAFT_39705 [Tremella mesenterica DSM
           1558]
          Length = 856

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/471 (66%), Positives = 385/471 (81%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADIFDFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D   E F++LY++YE EGK  + + A+KLWFAIL++Q ETG P+MLYKDA N
Sbjct: 355 PAECPGLADVHSEAFEELYERYEREGKGRKTIKAQKLWFAILEAQTETGGPFMLYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQ+LGTIK SNLCTEI+EY++ DEVAVCNLAS+AL  +++   + Y+F KL ++ K
Sbjct: 415 AKSNQQHLGTIKSSNLCTEIIEYSAPDEVAVCNLASLALPAFVDMERRVYDFKKLHEITK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNL+ +I  N+YPV EA  SNMRHRP+G+GVQGLAD F+ +R+PFD   +R LN QI
Sbjct: 475 VVTKNLDTVISRNYYPVPEAHRSNMRHRPVGLGVQGLADAFMALRMPFDSPAARELNIQI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ALE+SCE+A   G Y+TYEGSP+SQG LQ+D+WG  PTDLWDW  L+  IAKH
Sbjct: 535 FETIYHAALESSCEMAQERGKYETYEGSPISQGKLQFDLWGRVPTDLWDWTELRANIAKH 594

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTS +Y+RRVLSG+FQVV   LLRDL+ LGLW
Sbjct: 595 GVRNSLLVAPMPTASTSQILGWNECFEPYTSMLYARRVLSGDFQVVCPWLLRDLINLGLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+MK+ +I   GSIQ+I  IP +LK +YKTVWEI QK V+D+AADRGA+IDQSQSLNI+
Sbjct: 655 DDHMKNLIIAAGGSIQNIPSIPAELKAIYKTVWEISQKAVIDLAADRGAYIDQSQSLNIH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           +A  ++++++SMHF+GWK GLKTG+YYLRTKP+A AIQFTID + +  A A
Sbjct: 715 LANPSFSQLTSMHFYGWKRGLKTGLYYLRTKPSAQAIQFTIDASTLKQAKA 765



 Score =  289 bits (740), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 135/203 (66%), Positives = 168/203 (82%), Gaps = 2/203 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WG  PTDLWDW  L+  IAKHGVRNSLL+APMPTAST+QILG NE FEPYTS +Y
Sbjct: 569 LQFDLWGRVPTDLWDWTELRANIAKHGVRNSLLVAPMPTASTSQILGWNECFEPYTSMLY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSG+FQVV   LLRDL+ LGLWDD+MK+ +I   GSIQ+I  IP +LK +YKTVWE
Sbjct: 629 ARRVLSGDFQVVCPWLLRDLINLGLWDDHMKNLIIAAGGSIQNIPSIPAELKAIYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGA+IDQSQSLNI++A  ++++++SMHF+GWK GLKTG+YYLRTKP+A
Sbjct: 689 ISQKAVIDLAADRGAYIDQSQSLNIHLANPSFSQLTSMHFYGWKRGLKTGLYYLRTKPSA 748

Query: 949 NAIQFTIDKT--KMANAMASKDT 969
            AIQFTID +  K A A+A+  T
Sbjct: 749 QAIQFTIDASTLKQAKALATGPT 771



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 60/75 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWI D FM+RVESD  W+LMC
Sbjct: 295 RPGAFAIYLEPWHADIFDFLDLRKNHGKEEVRARDLFYALWISDLFMKRVESDGDWTLMC 354

Query: 61  PNACRGLSDSWGEKF 75
           P  C GL+D   E F
Sbjct: 355 PAECPGLADVHSEAF 369



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ +R+PFD   +R LN QIFETIY+ ALE+SCE+A   G Y+TYEGSP+S
Sbjct: 506 LGVQGLADAFMALRMPFDSPAARELNIQIFETIYHAALESSCEMAQERGKYETYEGSPIS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WG  PTDLWDW  L+     +G++
Sbjct: 566 QGKLQFDLWGRVPTDLWDWTELRANIAKHGVR 597



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 73/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           E + ++Q ++Q    G+T  +L + AA +  A +      +AIL ++I            
Sbjct: 37  EPAEITQKVIQGIHTGITTVELDNLAA-ETAAYLTTKHPDYAILAARIAISN-------- 87

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +    V+ +LY+ VN +TG   PMI+D+ Y++IM N D L++AIIYDRDF YN+
Sbjct: 88  LHKETKKSFSAVVHDLYSWVNPKTGKHAPMIADEVYKVIMDNKDTLDAAIIYDRDFAYNY 147

Query: 767 FGFK 770
           FGFK
Sbjct: 148 FGFK 151



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           KLWFAIL++Q ETG P+MLYKDA N KSNQQ+L  I+ 
Sbjct: 390 KLWFAILEAQTETGGPFMLYKDAANAKSNQQHLGTIKS 427


>gi|85001013|ref|XP_955225.1| ribonucleoside-diphosphate reductase large chain [Theileria
           annulata strain Ankara]
 gi|65303371|emb|CAI75749.1| ribonucleoside-diphosphate reductase large chain, putative
           [Theileria annulata]
          Length = 891

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/465 (64%), Positives = 381/465 (81%), Gaps = 1/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 350 RKGSFAIYLEPWHADIFKLLDLRKNHGSEDQRARDLFYALWIPDLFMKRVEANKNWTLMC 409

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL + WG++F+ LY +YE +G   + +PA+KLWFAIL SQIETGTPYMLYKDACN
Sbjct: 410 PDECRGLYEVWGDEFERLYTQYEQQGMGRKTIPAQKLWFAILQSQIETGTPYMLYKDACN 469

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLC EIV++TSKDEVAVCNLAS+AL  ++N   +T++F KL ++ +
Sbjct: 470 SKSNQQNLGTIKSSNLCCEIVQFTSKDEVAVCNLASVALPKFVNTQTRTFDFKKLYEICR 529

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T NLNK+ID N+YPV++AR SN RHRP+G+GVQGLAD F+ MR PF+ +E+R LNK+I
Sbjct: 530 VITYNLNKVIDRNYYPVKQARASNFRHRPMGVGVQGLADTFMLMRYPFESDEARELNKRI 589

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           FET+YY  L  S ++A + G Y++YEGSP S+G+LQ+D+WG      LWDW  LK  + +
Sbjct: 590 FETMYYACLSESIDLARQYGTYESYEGSPASKGLLQFDLWGAKVDNSLWDWDKLKADLRE 649

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSL IAPMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL DL++LGL
Sbjct: 650 HGLRNSLFIAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLNDLIDLGL 709

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ MK +LI  NGS++ I+ IP  +K+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 710 WNETMKQKLIAYNGSLKHIDEIPSHIKELYKTVWEIKQKHIIDMAADRGIFIDQSQSLNI 769

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +M +  ++K++SMHF+GWK GLKTG+YYLRT+PA +AI+FT+D +
Sbjct: 770 HMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPATDAIKFTVDAS 814



 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/191 (65%), Positives = 157/191 (82%), Gaps = 1/191 (0%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG      LWDW  LK  + +HG+RNSL IAPMPTAST+QILGNNESFEPYTSNI
Sbjct: 624 LQFDLWGAKVDNSLWDWDKLKADLREHGLRNSLFIAPMPTASTSQILGNNESFEPYTSNI 683

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL++LGLW++ MK +LI  NGS++ I+ IP  +K+LYKTVW
Sbjct: 684 YYRRVLSGEFFVVNPHLLNDLIDLGLWNETMKQKLIAYNGSLKHIDEIPSHIKELYKTVW 743

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNI+M +  ++K++SMHF+GWK GLKTG+YYLRT+PA
Sbjct: 744 EIKQKHIIDMAADRGIFIDQSQSLNIHMEQPTFSKLTSMHFYGWKKGLKTGVYYLRTQPA 803

Query: 948 ANAIQFTIDKT 958
            +AI+FT+D +
Sbjct: 804 TDAIKFTVDAS 814



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF  L+L+KN G E+ RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 350 RKGSFAIYLEPWHADIFKLLDLRKNHGSEDQRARDLFYALWIPDLFMKRVEANKNWTLMC 409

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL + WG++F+ LY +YE +G+
Sbjct: 410 PDECRGLYEVWGDEFERLYTQYEQQGM 436



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF+ +E+R LNK+IFET+YY  L  S ++A + G Y++YEGSP S
Sbjct: 561 VGVQGLADTFMLMRYPFESDEARELNKRIFETMYYACLSESIDLARQYGTYESYEGSPAS 620

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           +G+LQ+D+WG      LWDW  LK     +GL+
Sbjct: 621 KGLLQFDLWGAKVDNSLWDWDKLKADLREHGLR 653



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL SQIETGTPYMLYKDACN KSNQQNL  I+
Sbjct: 445 KLWFAILQSQIETGTPYMLYKDACNSKSNQQNLGTIK 481



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 732 TRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           T   +ISD  +E +M+N DRLN+ I Y RDF Y++FGFK
Sbjct: 168 TNASLISDDVFEFVMENKDRLNAEIDYSRDFQYDYFGFK 206


>gi|327287998|ref|XP_003228715.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Anolis carolinensis]
          Length = 745

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/503 (65%), Positives = 381/503 (75%), Gaps = 54/503 (10%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY+ YE +G+  R V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS                                   
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSN---------------------------------- 438

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
                            +EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLN+QI
Sbjct: 439 -----------------DEAEVSNKRHRPIGIGVQGLADAFILMRFPFESPEAQLLNQQI 481

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALEASC +A   GPY+TYEG P+S+GILQYDMW V PTDLWDW ALKEKIAKH
Sbjct: 482 FETIYYAALEASCNLAKECGPYETYEGCPLSKGILQYDMWNVVPTDLWDWKALKEKIAKH 541

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 542 GVRNSLLVAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 601

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI+
Sbjct: 602 NEEMKNQIIACNGSIQTIPEIPDDLKLLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIH 661

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+      K +  +EE
Sbjct: 662 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLNK---EKSSIGEEE 718

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            +A +E+  AAM+C  +N+++C+
Sbjct: 719 EEAKKERNKAAMVCSLENRDECL 741



 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/366 (55%), Positives = 244/366 (66%), Gaps = 46/366 (12%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE--ELYNMVNKETGT 732
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I+   L   + + T  
Sbjct: 379 RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLCTEIVEYTSN 438

Query: 733 RTPMISDKHYEIIMKNADRLNSAIIYDRD---------FNYNFFG--------------- 768
               +S+K +  I      L  A I  R           N   F                
Sbjct: 439 DEAEVSNKRHRPIGIGVQGLADAFILMRFPFESPEAQLLNQQIFETIYYAALEASCNLAK 498

Query: 769 -----------------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTA 811
                             +YDMW V PTDLWDW ALKEKIAKHGVRNSLL+APMPTASTA
Sbjct: 499 ECGPYETYEGCPLSKGILQYDMWNVVPTDLWDWKALKEKIAKHGVRNSLLVAPMPTASTA 558

Query: 812 QILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 871
           QILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I  NGSIQ 
Sbjct: 559 QILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQT 618

Query: 872 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGW 931
           I  IP  LK LYKTVWEI QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GW
Sbjct: 619 IPEIPDDLKLLYKTVWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGW 678

Query: 932 KLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRD 991
           K GLKTGMYYLRTKPAAN IQFT++K K+      K +  +EE +A +E+  AAM+C  +
Sbjct: 679 KQGLKTGMYYLRTKPAANPIQFTLNKEKLNK---EKSSIGEEEEEAKKERNKAAMVCSLE 735

Query: 992 NKEDCL 997
           N+++CL
Sbjct: 736 NRDECL 741



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHFDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 78/104 (75%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLN+QIFETIYY ALEASC +A   
Sbjct: 441 AEVSNKRHRPIGIGVQGLADAFILMRFPFESPEAQLLNQQIFETIYYAALEASCNLAKEC 500

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+TYEG P+S+GILQYDMW V PTDLWDW ALK     +G++
Sbjct: 501 GPYETYEGCPLSKGILQYDMWNVVPTDLWDWKALKEKIAKHGVR 544



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LY  VN      +PMI+ +  +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYTYVNPHNSKHSPMIAKETLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149


>gi|387595820|gb|EIJ93443.1| ribonucleoside-diphosphate reductase large subunit [Nematocida
           parisii ERTm1]
          Length = 786

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/504 (62%), Positives = 398/504 (78%), Gaps = 18/504 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+  +Y+EPWH DIFDFL+L+KNTGKEE RAR+LF GLW+PD FM+RVE D  W+L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN  +GL + +G++F++LY +YE E +  ++V PARKLW AIL+++IETG PY+LYKD+C
Sbjct: 356 PNMAKGLHEKYGDEFEELYVQYEKEERVEKKVVPARKLWKAILEAEIETGVPYILYKDSC 415

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           NRKSNQ+NLG IK SNLC EIVEYT  +E+AVCNLAS+AL  YI   +  +NF KLK+VA
Sbjct: 416 NRKSNQKNLGVIKGSNLCAEIVEYTDPNEIAVCNLASLALPTYIE--NNEFNFNKLKEVA 473

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           KIV KNLNKIIDVN YP+E+A+NSNM+HRPIG+GVQGLAD++I +  PF+  E+  LNK 
Sbjct: 474 KIVAKNLNKIIDVNKYPLEQAKNSNMKHRPIGMGVQGLADVYILLGYPFESKEAAELNKA 533

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIY+GALEAS E+A + GPY++Y GSPVS+GILQYDMWGV P++ WDWA LK+KIA 
Sbjct: 534 IFETIYFGALEASNELAQKYGPYESYAGSPVSKGILQYDMWGVQPSNRWDWAGLKKKIAA 593

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+A MPTAST+QILG NE FE +TSNIY+RR LSGEFQ+VN HL+++L +LGL
Sbjct: 594 HGVRNSLLVALMPTASTSQILGFNECFEGFTSNIYTRRTLSGEFQIVNSHLVKNLADLGL 653

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   MK+ +I + GSIQ+I  IP  +K LYKTVWEI QK V+D AADRGA++DQSQS+NI
Sbjct: 654 WGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWEIKQKAVIDQAADRGAYVDQSQSMNI 713

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +++   +A+++SMHF+GWK GLKTG YYLRTKP+  AI+FT+DK            ++QE
Sbjct: 714 HISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQAAIKFTVDKQ-----------QAQE 762

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
            +Q  +E A A   C  D   DC+
Sbjct: 763 YLQ--KESAPAPATCSLDG--DCL 782



 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 171/229 (74%), Gaps = 15/229 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGV P++ WDWA LK+KIA HGVRNSLL+A MPTAST+QILG NE FE +TSNIY
Sbjct: 569 LQYDMWGVQPSNRWDWAGLKKKIAAHGVRNSLLVALMPTASTSQILGFNECFEGFTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR LSGEFQ+VN HL+++L +LGLW   MK+ +I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 629 TRRTLSGEFQIVNSHLVKNLADLGLWGPEMKNIIIEHEGSIQNIPSIPDSIKQLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D AADRGA++DQSQS+NI+++   +A+++SMHF+GWK GLKTG YYLRTKP+ 
Sbjct: 689 IKQKAVIDQAADRGAYVDQSQSMNIHISTPTFAQLTSMHFYGWKKGLKTGTYYLRTKPSQ 748

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            AI+FT+DK            ++QE +Q  +E A A   C  D   DCL
Sbjct: 749 AAIKFTVDK-----------QQAQEYLQ--KESAPAPATCSLDG--DCL 782



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+  +Y+EPWH DIFDFL+L+KNTGKEE RAR+LF GLW+PD FM+RVE D  W+L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLRKNTGKEEMRARNLFLGLWVPDLFMKRVEEDGDWALFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN  +GL + +G++F++LY +YE E
Sbjct: 356 PNMAKGLHEKYGDEFEELYVQYEKE 380



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD++I +  PF+  E+  LNK IFETIY+GALEAS E+A + GPY++Y GSPVS
Sbjct: 506 MGVQGLADVYILLGYPFESKEAAELNKAIFETIYFGALEASNELAQKYGPYESYAGSPVS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMWGV P++ WDWA LK     +G++
Sbjct: 566 KGILQYDMWGVQPSNRWDWAGLKKKIAAHGVR 597



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   KLW AIL+++IETG PY+LYKD+CNRKSNQ+NL VI+
Sbjct: 387 VVPARKLWKAILEAEIETGVPYILYKDSCNRKSNQKNLGVIK 428



 Score = 46.6 bits (109), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + +L N +   T  +T +IS+K  +II+KN +RL+SAI  +RDF +++FG K
Sbjct: 99  EAMMKLSNSIIYGTDLKTEIISEKILDIILKNRERLDSAIKDERDFEFSYFGIK 152


>gi|340617899|ref|YP_004736352.1| ribonucleoside-diphosphate reductase, large subunit [Zobellia
           galactanivorans]
 gi|339732696|emb|CAZ95964.1| Ribonucleoside-diphosphate reductase, large subunit [Zobellia
           galactanivorans]
          Length = 828

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/475 (65%), Positives = 384/475 (80%), Gaps = 5/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI+ FL+LKKN GKEE RARDLFY +WI D FMRRVE++ +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIYAFLDLKKNHGKEEMRARDLFYAMWISDLFMRRVEANEEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL     E+F++LY KYEAEGK  + V AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLFTHHSEEFEELYLKYEAEGKGRKTVKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M++   + +++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVK--NGSFDHKELFKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+EGSP+SQG  Q+++WGV   +L   WDW  L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSTFEGSPISQGEFQHNLWGVKDEELSGRWDWEKLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++NMK +L+  NGSIQ IE IPQ ++DLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D +K   A  S
Sbjct: 710 NLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSKKKAAPVS 764



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 162/201 (80%), Gaps = 3/201 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WGV   +L   WDW  L++++ K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGVKDEELSGRWDWEKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW++NMK +L+  NGSIQ IE IPQ ++DLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVNLGLWNENMKQELMRANGSIQHIETIPQDIRDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMAS 966
            A +AI+FT+D +K   A  S
Sbjct: 744 AAVDAIKFTLDNSKKKAAPVS 764



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI+ FL+LKKN GKEE RARDLFY +WI D FMRRVE++ +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIYAFLDLKKNHGKEEMRARDLFYAMWISDLFMRRVEANEEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL     E+F++LY KYEAEG
Sbjct: 352 PNECPGLFTHHSEEFEELYLKYEAEG 377



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WGV   +L   WDW  L+
Sbjct: 561 QGEFQHNLWGVKDEELSGRWDWEKLR 586



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E +++
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYAKLAARISVSN--------LHKNTKKSFSETMKD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  T  + P++SD+ Y++I +N++RL+S IIY+RDF Y++FGFK
Sbjct: 100 LYEYVNPRTNKKAPLLSDEVYKVISENSERLDSTIIYNRDFGYDYFGFK 148



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 383 VKARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|423328774|ref|ZP_17306581.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 3837]
 gi|404604336|gb|EKB03970.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 3837]
          Length = 797

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/508 (62%), Positives = 402/508 (79%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ LY KYE EGK  R + AR+LW A+L++QIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEGKGRRTIKARELWEAVLEAQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG I+ SNLCTEI+EYTS DEVAVCNLASI+L M++   D  +N   L DV K
Sbjct: 412 AKSNQKNLGVIRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVE--DGQFNHQFLFDVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVEEA NSNMRHRP+G+GVQGLAD FI MR+PF   E++ LN++I
Sbjct: 470 RITRNLNRVIDRNYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIY+ AL AS E+A  +G Y T+EGSP+S+G  QY+MWGV   +L   WDWA+L++++
Sbjct: 530 FETIYFAALTASMEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
             +GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL+DLVEL
Sbjct: 590 MANGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++  NGSIQ I+ IP  +++LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR- 566
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K AN  A ++   
Sbjct: 710 NLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKANPNAIEEVEQ 769

Query: 567 -SQEEIQADQEQA-MAAMICRRDNKEDC 592
            S E+ QA  ++A MAA     +N EDC
Sbjct: 770 VSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  282 bits (722), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 139/234 (59%), Positives = 183/234 (78%), Gaps = 11/234 (4%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWGV   +L   WDWA+L++++  +GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGVKDEELSGRWDWASLRKEVMANGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL+DLVELGLW++++K +++  NGSIQ I+ IP  +++LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLKDLVELGLWNEDLKQEIMRANGSIQHIDFIPADIRELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTR--SQEEIQADQEQA-MAAMICRRDNKEDC 996
            A +AI+FT++  K AN  A ++    S E+ QA  ++A MAA     +N EDC
Sbjct: 744 SAVDAIKFTLNNEKKANPNAIEEVEQVSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ LY KYE EG
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEG 377



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR+PF   E++ LN++IFETIY+ AL AS E+A  +G Y T+EGSP+S
Sbjct: 501 LGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTASMEMAKEEGAYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWGV   +L   WDWA+L+   +  G++
Sbjct: 561 KGEFQYNMWGVKDEELSGRWDWASLRKEVMANGVR 595



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E +E+LY  VN  TG   P+I+D  YE+I K+++RL+S IIY RDFNY++FGFK
Sbjct: 95  ETVEDLYRYVNPRTGQEAPLIADDVYEVIKKHSERLDSTIIYQRDFNYDYFGFK 148



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW A+L++QIETGTPYMLYKDA N KSNQ+NL VI
Sbjct: 387 ELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGVI 422


>gi|387789963|ref|YP_006255028.1| ribonucleoside-diphosphate reductase subunit alpha [Solitalea
           canadensis DSM 3403]
 gi|379652796|gb|AFD05852.1| ribonucleoside-diphosphate reductase, alpha subunit [Solitalea
           canadensis DSM 3403]
          Length = 788

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/463 (66%), Positives = 382/463 (82%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWIPD FM+RVES+ +WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLDLRKNHGKEELRARDLFYALWIPDLFMKRVESNGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D++G+ F+ LY++YE EGK  + V A++LWFAI+DSQIETGTPYMLYKDA N
Sbjct: 353 PHEAPGLYDTYGDDFEALYERYEKEGKARKTVKAQELWFAIMDSQIETGTPYMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIK SNLCTEI+EYT++DEVAVCNLASI+L  ++   +  ++  KL +V  
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIMEYTAEDEVAVCNLASISLPKFV--INGEFDHQKLYEVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLNKIID N+YPVEEARNSN+RHRP+G+G+QGLAD+FI +R PF+  E++ LN++I
Sbjct: 471 QATLNLNKIIDGNYYPVEEARNSNLRHRPVGLGIQGLADVFIMLRHPFESAEAQSLNREI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIY+ AL AS ++A  DGPY+TYEGSP S+GILQYDMW VTP+  WD+  LK++I K+
Sbjct: 531 AETIYFAALSASKDLAKVDGPYETYEGSPSSKGILQYDMWNVTPSKRWDFDGLKKEIKKY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QI GNNE FEPYTSNIY RRVLSGEF VVN HLL+DLV L LW
Sbjct: 591 GIRNSLLVAPMPTASTSQIFGNNECFEPYTSNIYVRRVLSGEFIVVNKHLLKDLVALNLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D  MK+++I   GSIQDI+ IPQ +K+LYKTVWEI Q+T++DMAADRGA+  QSQSLN++
Sbjct: 651 DGQMKNKIIAAEGSIQDIKEIPQHIKELYKTVWEIKQRTLIDMAADRGAYTCQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +   N AK++SMHF+ WK GLKTGMYYLRT+ A  A++FT++K
Sbjct: 711 VQSPNNAKLTSMHFYAWKKGLKTGMYYLRTQAANAAVKFTVEK 753



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 156/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTP+  WD+  LK++I K+G+RNSLL+APMPTAST+QI GNNE FEPYTSNIY
Sbjct: 565 LQYDMWNVTPSKRWDFDGLKKEIKKYGIRNSLLVAPMPTASTSQIFGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF VVN HLL+DLV L LWD  MK+++I   GSIQDI+ IPQ +K+LYKTVWE
Sbjct: 625 VRRVLSGEFIVVNKHLLKDLVALNLWDGQMKNKIIAAEGSIQDIKEIPQHIKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMAADRGA+  QSQSLN+++   N AK++SMHF+ WK GLKTGMYYLRT+ A 
Sbjct: 685 IKQRTLIDMAADRGAYTCQSQSLNLFVQSPNNAKLTSMHFYAWKKGLKTGMYYLRTQAAN 744

Query: 949 NAIQFTIDK 957
            A++FT++K
Sbjct: 745 AAVKFTVEK 753



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIFDFL+L+KN GKEE RARDLFY LWIPD FM+RVES+ +WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFDFLDLRKNHGKEELRARDLFYALWIPDLFMKRVESNGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL D++G+ F+ LY++YE EG
Sbjct: 353 PHEAPGLYDTYGDDFEALYERYEKEG 378



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+FI +R PF+  E++ LN++I ETIY+ AL AS ++A  DGPY+TYEGSP S
Sbjct: 502 LGIQGLADVFIMLRHPFESAEAQSLNREIAETIYFAALSASKDLAKVDGPYETYEGSPSS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW VTP+  WD+  LK     YG++
Sbjct: 562 KGILQYDMWNVTPSKRWDFDGLKKEIKKYGIR 593



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 36/46 (78%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K    V   +LWFAI+DSQIETGTPYMLYKDA N+KSNQQNL  I+
Sbjct: 379 KARKTVKAQELWFAIMDSQIETGTPYMLYKDAANKKSNQQNLGTIK 424



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA    +L       +A+L S+I             ++ + +   + +E 
Sbjct: 50  GVTTSELDNLAAETAASLTVK-HPDYALLASRIAVSN--------LHKNTEKSFSKTMER 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN ++ +TG    ++SD   EII +NAD L+S IIYDRDF +++FGFK
Sbjct: 101 LYNYIDPKTGLNAQLLSDDVIEIIRQNADTLDSNIIYDRDFAFDYFGFK 149


>gi|225011000|ref|ZP_03701466.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
 gi|225004907|gb|EEG42863.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-3C]
          Length = 827

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE++A+W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L ++  E FD+LY KYE+EGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPNLFNNHSEAFDELYLKYESEGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M++   D  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVK--DGAFDHKELFKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNEEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ AL AS E A  DGPYQ+Y+GSP+SQG  Q+++WG+   +L   WDWA L++ +
Sbjct: 530 FETLYFAALTASMEEAKADGPYQSYKGSPISQGEFQHNLWGIKDEELSGRWDWAKLRKDV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVAL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLWD+ +K +L+  NGS+Q I+ IPQ +K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWDEGLKQELMRANGSVQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           N++M   NY+K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D T
Sbjct: 710 NLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNT 756



 Score =  273 bits (698), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 158/193 (81%), Gaps = 3/193 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDWA L++ + K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDEELSGRWDWAKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLWD+ +K +L+  NGS+Q I+ IPQ +K+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVALGLWDEGLKQELMRANGSVQHIDIIPQDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKT 958
            A +AI+FT+D T
Sbjct: 744 AAVDAIKFTLDNT 756



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE++A+W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEANAEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L ++  E FD+LY KYE+EG
Sbjct: 352 PNECPNLFNNHSEAFDELYLKYESEG 377



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ AL AS E A  DGPYQ+Y+GSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDEAKKLNEEIFETLYFAALTASMEEAKADGPYQSYKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WG+   +L   WDWA L+
Sbjct: 561 QGEFQHNLWGIKDEELSGRWDWAKLR 586



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      FA L ++I             ++ + +   E +E+
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDFAKLAARISVSN--------LHKNTKKSFSETMED 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN   G  +P++SD+ Y+ IM NA+ L+S IIY+RDF Y++FGFK
Sbjct: 100 LYKYVNPRNGKSSPLLSDEVYQAIMDNAELLDSTIIYNRDFGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|156838441|ref|XP_001642926.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113506|gb|EDO15068.1| hypothetical protein Kpol_411p13 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 883

 Score =  665 bits (1717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/467 (64%), Positives = 380/467 (81%), Gaps = 4/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +A W+L  
Sbjct: 293 RPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +GE+F+ LY +Y  EG+  + + A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PSEAPGLDEVYGEEFEALYNRYVEEGRGKKTIKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKLK 266
            KSNQ+NLGTIK SNLC EIVEY++ DE AVCNLASIAL  +I  +       YNF KL 
Sbjct: 413 LKSNQRNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIEKSKDEKQSFYNFKKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+AK+VT+NLN++ID N+YPV+EA+NSN RHRPI +GVQGLAD F+ +R+PF+  E++ L
Sbjct: 473 DIAKVVTRNLNRVIDRNYYPVQEAKNSNFRHRPIALGVQGLADAFMLLRIPFESKEAKEL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  IFET+Y+GALEASCE+A  +G YQT++GSP S+GILQ+DMW   PTDLWDW  LK  
Sbjct: 533 NIHIFETLYHGALEASCELAQEEGAYQTFKGSPASEGILQFDMWNRKPTDLWDWDTLKSN 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I  HG+RNSL++APMPTAST+QILG NE FEP+TSN+Y RRVLSGEFQ+VN +LLRDLV+
Sbjct: 593 IIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMYQRRVLSGEFQIVNPYLLRDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+W+++MK  LI +NGSIQ++  +PQ+LKDLYKTVWEI QKT++DM+ADR AFIDQS S
Sbjct: 653 LGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWEISQKTIIDMSADRSAFIDQSHS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +NI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK
Sbjct: 713 MNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDK 759



 Score =  285 bits (729), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 158/189 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   PTDLWDW  LK  I  HG+RNSL++APMPTAST+QILG NE FEP+TSN+Y
Sbjct: 571 LQFDMWNRKPTDLWDWDTLKSNIIAHGIRNSLVMAPMPTASTSQILGYNECFEPFTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN +LLRDLV+LG+W+++MK  LI +NGSIQ++  +PQ+LKDLYKTVWE
Sbjct: 631 QRRVLSGEFQIVNPYLLRDLVDLGIWNESMKQHLITDNGSIQNLPNVPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DM+ADR AFIDQS S+NI++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 ISQKTIIDMSADRSAFIDQSHSMNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDK 957
            AIQFTIDK
Sbjct: 751 AAIQFTIDK 759



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +R+PF+  E++ LN  IFET+Y+GALEASCE+A  +G YQT++GSP 
Sbjct: 507 ALGVQGLADAFMLLRIPFESKEAKELNIHIFETLYHGALEASCELAQEEGAYQTFKGSPA 566

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   PTDLWDW  LK   + +G++
Sbjct: 567 SEGILQFDMWNRKPTDLWDWDTLKSNIIAHGIR 599



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +A W+L  
Sbjct: 293 RPGAMALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENADWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + +GE+F+ LY +Y  EG
Sbjct: 353 PSEAPGLDEVYGEEFEALYNRYVEEG 378



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A+L +++             +++
Sbjct: 39  VTQRIITGVYEGVTTYELDNLAA-ETAAYMTTVHPDYAVLAARLAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +VI+EL++ VN E     P+IS   Y+ +M N D LNSAI+YDRDFNYN+FGFK
Sbjct: 90  TTKVFSKVIDELHHYVNPENNKPAPLISKDVYDTVMANKDELNSAIVYDRDFNYNYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+MLYKDACN KSNQ+NL  I+
Sbjct: 388 KLWYSILEAQTETGTPFMLYKDACNLKSNQRNLGTIK 424


>gi|557803|emb|CAA86157.1| rir3 [Saccharomyces cerevisiae]
 gi|323304492|gb|EGA58258.1| Rnr3p [Saccharomyces cerevisiae FostersB]
 gi|392298850|gb|EIW09946.1| Rnr3p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 885

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/518 (59%), Positives = 401/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 428 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 487

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+  E++ L
Sbjct: 488 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTL 547

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 548 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 607

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 608 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 667

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 668 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 727

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 728 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 786

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 787 VSELDRPVYVPKGTKFSEQKAASALTESSDNEKDASPV 824



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 586 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AIQFTID+    + A  +AS     +     +  +  +++A +A+    DN++D 
Sbjct: 766 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDA 821



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREG 394



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 522 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 581

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 582 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 614



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 55  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 105

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 106 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 165



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP +   L  D+WG    +L+  +        +   KLW+AIL +Q ETGT
Sbjct: 361 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 417

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 418 PFMVYKDACNRKTNQQNLGTIK 439


>gi|118346189|ref|XP_976850.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila]
 gi|89288340|gb|EAR86328.1| Ribonucleotide reductase, barrel domain containing protein
            [Tetrahymena thermophila SB210]
          Length = 2928

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/463 (64%), Positives = 383/463 (82%), Gaps = 2/463 (0%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R G+FAIYLEPWH DIF+FL+LKKN GKEE RARDLFY LWIPD FM+RV SD  W+LMC
Sbjct: 2377 RKGSFAIYLEPWHSDIFEFLQLKKNHGKEEQRARDLFYALWIPDLFMKRVISDGTWTLMC 2436

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            PN C GL D WG++F+ LY KYE EGK  + + AR+LW  I+DSQIETGTPYMLYKDACN
Sbjct: 2437 PNECPGLPDVWGDEFEALYTKYENEGKGRKTINARELWQDIVDSQIETGTPYMLYKDACN 2496

Query: 211  RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            RKSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLASI+L  ++   +  Y++ KL +++K
Sbjct: 2497 RKSNQQNLGTIKSSNLCTEIIEYTSPDEVAVCNLASISLVKFV-KENGEYDYQKLYEISK 2555

Query: 271  IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +VT NLNK+ID N+YPV EA+NSNMRHRPIGIGVQGLAD FI+MR+ F+ +E++++N++I
Sbjct: 2556 VVTFNLNKVIDENYYPVIEAKNSNMRHRPIGIGVQGLADAFIKMRISFESDEAQIVNEKI 2615

Query: 331  FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WDWAALKEKIAK 389
            FETIY+GA EAS EIA ++GPY+T++GSP S+G LQ+D+W   P    +DW  LK+KI +
Sbjct: 2616 FETIYFGACEASMEIAIKEGPYETFKGSPASKGQLQFDLWNYKPHLCGYDWDGLKQKIVE 2675

Query: 390  HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            HG+RNSLLI+PMPTAST+QILGN ESFEPYTSN+Y+RRVL+GEF  +N HL++DL+E  L
Sbjct: 2676 HGMRNSLLISPMPTASTSQILGNCESFEPYTSNLYTRRVLAGEFVCINPHLVQDLIERNL 2735

Query: 450  WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
            W+ ++K+QL+  NGS+  +  IP  +K LYKTVWE+ QK ++++A  R  FIDQSQSLNI
Sbjct: 2736 WNPSIKNQLLAFNGSVSQVPDIPDDIKQLYKTVWEVSQKAIINLAVGRSPFIDQSQSLNI 2795

Query: 510  YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            ++++ +Y+K++SMHF+ W+ GLKTGMYYLR++PAA+ I+FT+D
Sbjct: 2796 HISDPSYSKITSMHFYAWEKGLKTGMYYLRSRPAADPIKFTLD 2838



 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 152/189 (80%), Gaps = 1/189 (0%)

Query: 769  FKYDMWGVTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
             ++D+W   P    +DW  LK+KI +HG+RNSLLI+PMPTAST+QILGN ESFEPYTSN+
Sbjct: 2650 LQFDLWNYKPHLCGYDWDGLKQKIVEHGMRNSLLISPMPTASTSQILGNCESFEPYTSNL 2709

Query: 828  YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
            Y+RRVL+GEF  +N HL++DL+E  LW+ ++K+QL+  NGS+  +  IP  +K LYKTVW
Sbjct: 2710 YTRRVLAGEFVCINPHLVQDLIERNLWNPSIKNQLLAFNGSVSQVPDIPDDIKQLYKTVW 2769

Query: 888  EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
            E+ QK ++++A  R  FIDQSQSLNI++++ +Y+K++SMHF+ W+ GLKTGMYYLR++PA
Sbjct: 2770 EVSQKAIINLAVGRSPFIDQSQSLNIHISDPSYSKITSMHFYAWEKGLKTGMYYLRSRPA 2829

Query: 948  ANAIQFTID 956
            A+ I+FT+D
Sbjct: 2830 ADPIKFTLD 2838



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 1    RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
            R G+FAIYLEPWH DIF+FL+LKKN GKEE RARDLFY LWIPD FM+RV SD  W+LMC
Sbjct: 2377 RKGSFAIYLEPWHSDIFEFLQLKKNHGKEEQRARDLFYALWIPDLFMKRVISDGTWTLMC 2436

Query: 61   PNACRGLSDSWGEKFDDLYKKYEAEG 86
            PN C GL D WG++F+ LY KYE EG
Sbjct: 2437 PNECPGLPDVWGDEFEALYTKYENEG 2462



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593  IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
            IGVQGLAD FI+MR+ F+ +E++++N++IFETIY+GA EAS EIA ++GPY+T++GSP S
Sbjct: 2587 IGVQGLADAFIKMRISFESDEAQIVNEKIFETIYFGACEASMEIAIKEGPYETFKGSPAS 2646

Query: 653  QGILQYDMWGVTPTDL-WDWAALKVLALVYGLK 684
            +G LQ+D+W   P    +DW  LK   + +G++
Sbjct: 2647 KGQLQFDLWNYKPHLCGYDWDGLKQKIVEHGMR 2679



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 34/41 (82%)

Query: 680  VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            +   +LW  I+DSQIETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 2468 INARELWQDIVDSQIETGTPYMLYKDACNRKSNQQNLGTIK 2508



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 716  LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             E I  LYN V+K +G +  +I+   YEI+ +NA+ +   I YDRD+ Y+FFGFK
Sbjct: 2180 FETISALYNYVDK-SGRQAGLIAKDVYEIVKENAEAIEKVINYDRDYTYDFFGFK 2233


>gi|328864042|gb|EGG13141.1| hypothetical protein MELLADRAFT_41450 [Melampsora larici-populina
           98AG31]
          Length = 871

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/463 (66%), Positives = 377/463 (81%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FM+RVE +  W L C
Sbjct: 294 RPGAFAIYIEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLFC 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GLSD +GE F+ L+ +YE EG+  + V A+KLW+AIL++Q ETG P+MLYKDA N
Sbjct: 354 PAEAPGLSDVYGEAFEKLFDQYEKEGRAKKTVKAQKLWYAILEAQTETGNPFMLYKDAAN 413

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  YI   D  Y+F KL +V K
Sbjct: 414 RKSNQKNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTYIT--DGVYDFQKLHEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLN+IIDVN+YPV EA+ SNMRHRPIGIGV GLAD F  ++LPFD  E++ LN QI
Sbjct: 472 EVTWNLNRIIDVNYYPVPEAKKSNMRHRPIGIGVNGLADAFQILKLPFDSPEAKKLNAQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  +G Y+T+ GSP S G LQYDMWGVTP+DLW W  LKE+I   
Sbjct: 532 FETLYHAALEASNELAVAEGAYETFPGSPASLGELQYDMWGVTPSDLWKWDDLKERIKAT 591

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTAST+QI+G NE FEPYTSNIY+RRVL+GEFQ+VN  LL++LVE+GLW
Sbjct: 592 GLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIYTRRVLAGEFQIVNPWLLKELVEMGLW 651

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+++I + GSIQ+I  IP K+K +YKTVWEI QK ++D+AADRGAFIDQSQSLNI+
Sbjct: 652 NDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWEISQKVIIDLAADRGAFIDQSQSLNIH 711

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +    + +++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+DK
Sbjct: 712 LQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAANAIQFTVDK 754



 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 161/189 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMWGVTP+DLW W  LKE+I   G+RNSLL+APMPTAST+QI+G NE FEPYTSNIY
Sbjct: 566 LQYDMWGVTPSDLWKWDDLKERIKATGLRNSLLLAPMPTASTSQIMGFNECFEPYTSNIY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQ+VN  LL++LVE+GLW+D MK+++I + GSIQ+I  IP K+K +YKTVWE
Sbjct: 626 TRRVLAGEFQIVNPWLLKELVEMGLWNDEMKNRIIAHQGSIQNIPDIPTKMKAVYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++D+AADRGAFIDQSQSLNI++    + +++SMHF+ WK GLKTGMYYLRT+ AA
Sbjct: 686 ISQKVIIDLAADRGAFIDQSQSLNIHLQAPTFGQLTSMHFYAWKKGLKTGMYYLRTRAAA 745

Query: 949 NAIQFTIDK 957
           NAIQFT+DK
Sbjct: 746 NAIQFTVDK 754



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH D+FD+L+L+KN GKEE RARDLFY LWIPD FM+RVE +  W L C
Sbjct: 294 RPGAFAIYIEPWHADVFDWLDLRKNHGKEESRARDLFYALWIPDLFMQRVEDNGDWPLFC 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GLSD +GE F+ L+ +YE EG
Sbjct: 354 PAEAPGLSDVYGEAFEKLFDQYEKEG 379



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGV GLAD F  ++LPFD  E++ LN QIFET+Y+ ALEAS E+A  +G Y+T+ GSP S
Sbjct: 503 IGVNGLADAFQILKLPFDSPEAKKLNAQIFETLYHAALEASNELAVAEGAYETFPGSPAS 562

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQYDMWGVTP+DLW W  LK      GL+
Sbjct: 563 LGELQYDMWGVTPSDLWKWDDLKERIKATGLR 594



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VIE+LY  VN + G  +PMISD+ YE +  NA+ LNSA+IYDRDFNYN+FGFK
Sbjct: 97  QVIEDLYRYVNPKNGRPSPMISDETYEAVQANAEALNSAVIYDRDFNYNYFGFK 150



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++Q ETG P+MLYKDA NRKSNQ+NL  I+
Sbjct: 385 VKAQKLWYAILEAQTETGNPFMLYKDAANRKSNQKNLGTIK 425


>gi|386819560|ref|ZP_10106776.1| ribonucleoside-diphosphate reductase, alpha subunit [Joostella
           marina DSM 19592]
 gi|386424666|gb|EIJ38496.1| ribonucleoside-diphosphate reductase, alpha subunit [Joostella
           marina DSM 19592]
          Length = 810

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/484 (63%), Positives = 388/484 (80%), Gaps = 5/484 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +W+PD FM+RVE + +W+LMC
Sbjct: 292 RKGSFAVYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEENGEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D   ++FD LY KYEAEGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVHSDEFDALYLKYEAEGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M++   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKGNE--FDHKELYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLN++ID N+YPVEEARNSN RHRPIG+GVQGLAD FI++R+PF  +E++ LN+ I
Sbjct: 470 RVTRNLNRVIDRNYYPVEEARNSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKKLNQDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY+TY+GSP+SQG  Q+++WG+   +L   WDW  L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYETYKGSPISQGDFQHNLWGIKDDELSGNWDWDKLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW + +K +L+  NGSIQ IE IPQ ++DLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWTEELKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D TK    + ++ A  
Sbjct: 710 NLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTKKTEKVPAEAAEV 769

Query: 568 QEEI 571
           +  +
Sbjct: 770 KASV 773



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 159/194 (81%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++++ K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDDELSGNWDWDKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW + +K +L+  NGSIQ IE IPQ ++DLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVDLGLWTEELKQELMRANGSIQHIETIPQDIRDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK 959
            A +AI+FT+D TK
Sbjct: 744 SAVDAIKFTLDNTK 757



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +W+PD FM+RVE + +W+LMC
Sbjct: 292 RKGSFAVYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEENGEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D   ++FD LY KYEAEG
Sbjct: 352 PNECPGLCDVHSDEFDALYLKYEAEG 377



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 66/86 (76%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF  +E++ LN+ IFET+Y+ A+ AS E+A  +GPY+TY+GSP+S
Sbjct: 501 LGVQGLADTFIKLRMPFTSDEAKKLNQDIFETLYFAAVTASMEMAKEEGPYETYKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WG+   +L   WDW  L+
Sbjct: 561 QGDFQHNLWGIKDDELSGNWDWDKLR 586



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E + +
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYARLAARISVSN--------LHKNTKKSFSETMAD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN VN  TG   P++SD+ YE+I KNAD+L+S IIY+RDF Y++FGFK
Sbjct: 100 LYNYVNPRTGKAAPLLSDEVYEVIQKNADKLDSLIIYNRDFGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|423315656|ref|ZP_17293561.1| ribonucleoside-diphosphate reductase, alpha subunit [Bergeyella
           zoohelcum ATCC 43767]
 gi|405585760|gb|EKB59563.1| ribonucleoside-diphosphate reductase, alpha subunit [Bergeyella
           zoohelcum ATCC 43767]
          Length = 777

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/504 (61%), Positives = 392/504 (77%), Gaps = 22/504 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DIFDF++++KN GKEE RARDLF  LWI D FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHSDIFDFIDIRKNHGKEEMRARDLFPALWISDLFMQRVEADQMWSLFD 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL + +GEKF++LY  YE EGKF +Q+ AR+LW AIL++QIETGTPYM YKDA N
Sbjct: 353 PNEAQGLYEVYGEKFNELYTTYENEGKFRKQIKARELWTAILEAQIETGTPYMCYKDAVN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  Y+  +DK ++F KL +V K
Sbjct: 413 EKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYV--SDKGFDFQKLYEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNKIID N+YP+ E + SN RHRPIG+GVQGLAD+F+ +RLPF+   +R LNK I
Sbjct: 471 IVTRNLNKIIDGNYYPIPETKTSNDRHRPIGLGVQGLADVFLLLRLPFESEAARKLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ++EAS E+A   G Y ++ GSP+S+G  Q+D+W V P+D WDW  L+ ++  H
Sbjct: 531 FETIYFASMEASMELAKEQGAYSSFAGSPLSEGKFQFDLWQVAPSDRWDWEKLRNEVMTH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN  LL+DL+ELGLW
Sbjct: 591 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKFLLKDLIELGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +  MK++LI  NGS+Q+I  IP +LK+LYKTVWEI QKT++DMAA+RGAFI QSQSLN++
Sbjct: 651 NPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMAAERGAFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MAE N+AK++SMHFH WK GLKTGMYYLRTK A +AI+FT+D                 +
Sbjct: 711 MAEPNFAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTVDT----------------Q 754

Query: 571 IQADQEQAMAAMICRRDNKEDCIG 594
           I + Q Q    + C  DN E+C+ 
Sbjct: 755 ILSGQSQ----VACSLDNPEECLA 774



 Score =  298 bits (764), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 175/229 (76%), Gaps = 20/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L+ ++  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 FQFDLWQVAPSDRWDWEKLRNEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN  LL+DL+ELGLW+  MK++LI  NGS+Q+I  IP +LK+LYKTVWE
Sbjct: 625 NRRVLSGEFVVVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAA+RGAFI QSQSLN++MAE N+AK++SMHFH WK GLKTGMYYLRTK A 
Sbjct: 685 IKQKTIIDMAAERGAFICQSQSLNLFMAEPNFAKLTSMHFHAWKSGLKTGMYYLRTKAAV 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D                 +I + Q Q    + C  DN E+CL
Sbjct: 745 DAIKFTVDT----------------QILSGQSQ----VACSLDNPEECL 773



 Score =  123 bits (309), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DIFDF++++KN GKEE RARDLF  LWI D FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHSDIFDFIDIRKNHGKEEMRARDLFPALWISDLFMQRVEADQMWSLFD 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  +GL + +GEKF++LY  YE EG
Sbjct: 353 PNEAQGLYEVYGEKFNELYTTYENEG 378



 Score =  112 bits (281), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 3/138 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +RLPF+   +R LNK IFETIY+ ++EAS E+A   G Y ++ GSP+S
Sbjct: 502 LGVQGLADVFLLLRLPFESEAARKLNKDIFETIYFASMEASMELAKEQGAYSSFAGSPLS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR--K 710
           +G  Q+D+W V P+D WDW  L+   + +G++    +L       T  +L  + C     
Sbjct: 562 EGKFQFDLWQVAPSDRWDWEKLRNEVMTHGVRNSL-LLAPMPTASTSQILGNNECFEPYT 620

Query: 711 SNQQNLEVIEELYNMVNK 728
           SN  N  V+   + +VNK
Sbjct: 621 SNIYNRRVLSGEFVVVNK 638



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           F++L ++I       L+K+     S    L     LY   +  T T  P+IS++ Y+II 
Sbjct: 74  FSVLAARIAVSN---LHKNTLKSFSKTAQL-----LYEYTDPITQTHAPLISEEIYKIIR 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           KNAD L+S++IYDRD+N+++FGFK
Sbjct: 126 KNADELDSSVIYDRDYNFDYFGFK 149



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW AIL++QIETGTPYM YKDA N KSNQ+N+  I
Sbjct: 388 ELWTAILEAQIETGTPYMCYKDAVNEKSNQKNIGTI 423


>gi|398364373|ref|NP_012198.3| ribonucleotide-diphosphate reductase subunit RNR3 [Saccharomyces
           cerevisiae S288c]
 gi|730516|sp|P21672.4|RIR3_YEAST RecName: Full=Ribonucleoside-diphosphate reductase large chain 2;
           AltName: Full=Ribonucleotide reductase DNA
           damage-inducible regulatory subunit 2; AltName:
           Full=Ribonucleotide reductase R1 subunit 2; AltName:
           Full=Ribonucleotide reductase large subunit 2
 gi|151943097|gb|EDN61432.1| ribonucleotide reductase, large (R1) subunit [Saccharomyces
           cerevisiae YJM789]
 gi|285812585|tpg|DAA08484.1| TPA: ribonucleotide-diphosphate reductase subunit RNR3
           [Saccharomyces cerevisiae S288c]
          Length = 869

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/518 (59%), Positives = 401/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+  E++ L
Sbjct: 472 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 712 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 770

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 771 VSELDRPVYVPKGTKFSEQKAASALTESSDNEKDASPV 808



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AIQFTID+    + A  +AS     +     +  +  +++A +A+    DN++D 
Sbjct: 750 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDA 805



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREG 378



 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 506 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 598



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP +   L  D+WG    +L+  +        +   KLW+AIL +Q ETGT
Sbjct: 345 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 401

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 402 PFMVYKDACNRKTNQQNLGTIK 423


>gi|373108816|ref|ZP_09523097.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 10230]
 gi|423129514|ref|ZP_17117189.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 12901]
 gi|371646061|gb|EHO11578.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 10230]
 gi|371648564|gb|EHO14052.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CCUG 12901]
          Length = 797

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/508 (62%), Positives = 400/508 (78%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ LY KYE EGK  R + AR+LW A+L++QIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEGKGRRTIKARELWEAVLEAQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG I+ SNLCTEI+EYTS DEVAVCNLASI+L M++   D  +N   L DV K
Sbjct: 412 AKSNQKNLGVIRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVE--DGQFNHQFLFDVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVEEA NSNMRHRP+G+GVQGLAD FI MR+PF   E++ LN++I
Sbjct: 470 RITRNLNRVIDRNYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIY+ AL AS E+A  +G Y T+EGSP+S+G  QY+MWGV   +L   WDWA+L++++
Sbjct: 530 FETIYFAALTASMEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
              GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL+DLVEL
Sbjct: 590 MASGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++  NGSIQ I+ IP  +++LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR- 566
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K  N  A ++   
Sbjct: 710 NLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKTNPNAIEEVEQ 769

Query: 567 -SQEEIQADQEQA-MAAMICRRDNKEDC 592
            S E+ QA  ++A MAA     +N EDC
Sbjct: 770 VSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/234 (58%), Positives = 181/234 (77%), Gaps = 11/234 (4%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWGV   +L   WDWA+L++++   GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGVKDEELSGRWDWASLRKEVMASGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL+DLVELGLW++++K +++  NGSIQ I+ IP  +++LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLKDLVELGLWNEDLKQEIMRANGSIQHIDFIPADIRELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTR--SQEEIQADQEQA-MAAMICRRDNKEDC 996
            A +AI+FT++  K  N  A ++    S E+ QA  ++A MAA     +N EDC
Sbjct: 744 SAVDAIKFTLNNEKKTNPNAIEEVEQVSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ LY KYE EG
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEG 377



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR+PF   E++ LN++IFETIY+ AL AS E+A  +G Y T+EGSP+S
Sbjct: 501 LGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTASMEMAKEEGAYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWGV   +L   WDWA+L+   +  G++
Sbjct: 561 KGEFQYNMWGVKDEELSGRWDWASLRKEVMASGVR 595



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E +E+LY  VN  TG   P+I+D  YE+I K+ +RL+S IIY RDFNY++FGFK
Sbjct: 95  ETVEDLYRYVNPRTGQEAPLIADDVYEVIKKHGERLDSTIIYQRDFNYDYFGFK 148



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW A+L++QIETGTPYMLYKDA N KSNQ+NL VI
Sbjct: 387 ELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGVI 422


>gi|259147192|emb|CAY80445.1| Rnr3p [Saccharomyces cerevisiae EC1118]
          Length = 885

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/518 (59%), Positives = 401/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGSWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 428 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 487

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+  E++ L
Sbjct: 488 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTL 547

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 548 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 607

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 608 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 667

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 668 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 727

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 728 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 786

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 787 VSELDRPVYVPKGTKFFEQKAASALTESSDNEKDASPV 824



 Score =  275 bits (704), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 586 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 766 AAIQFTIDQ 774



 Score =  132 bits (332), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGSWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREG 394



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 522 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 581

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 582 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 614



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 55  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 105

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 106 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 165



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+M+YKDACNRK+NQQNL  I+
Sbjct: 403 KLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIK 439


>gi|325953831|ref|YP_004237491.1| ribonucleoside-diphosphate reductase subunit alpha [Weeksella
           virosa DSM 16922]
 gi|323436449|gb|ADX66913.1| ribonucleoside-diphosphate reductase, alpha subunit [Weeksella
           virosa DSM 16922]
          Length = 779

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/503 (62%), Positives = 393/503 (78%), Gaps = 20/503 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLEPWH DIFDFL L+KN GKEE RARDLF  LWIPD FM+RVE +A WSL  
Sbjct: 293 RKGAIAVYLEPWHADIFDFLNLRKNHGKEEMRARDLFPALWIPDLFMQRVEENADWSLFD 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D +G  F++LY+ YE +G F ++V AR+LW AIL++QIETGTPYM YKDA N
Sbjct: 353 PNEAPGLYDVYGSSFEELYQHYENDGIFRKKVKARELWNAILEAQIETGTPYMCYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+G I+ SNLCTEI+EYTS DEVAVCNLAS+AL  Y+  ++  ++F KL +V K
Sbjct: 413 EKSNQKNIGVIRSSNLCTEIMEYTSADEVAVCNLASLALPRYV--SENGFDFQKLYEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID N+YPV E  NSN +HRPIG+GVQGLAD+F+ +R+PF+  ++R LNK I
Sbjct: 471 IVTRNLNKVIDGNYYPVPETENSNFKHRPIGLGVQGLADVFLLLRMPFESEKARQLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY A+E+S E+A  +G Y++++GSP+S+G  Q+D+W V P+D WDW  L++ + + 
Sbjct: 531 FETIYYAAMESSMELAKEEGAYESFKGSPLSEGKFQFDLWNVQPSDRWDWKGLRKNVMEF 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HL++DL+EL LW
Sbjct: 591 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKHLIKDLIELNLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           D  MK++LI  NGS+Q+IE IP  LK+LYKTVWEI QKT++DMAADRGAFI QSQSLN++
Sbjct: 651 DARMKNKLIAENGSVQNIEEIPANLKELYKTVWEIKQKTIIDMAADRGAFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MAE N AK++SMHF+ WK GLKTGMYYLRTK AA+AI+FT++K +           S E+
Sbjct: 711 MAEPNMAKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVEKVQ-----------SSED 759

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
            Q D       + C  DN ++CI
Sbjct: 760 KQVD-------ISCSLDNPDECI 775



 Score =  298 bits (764), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 141/229 (61%), Positives = 177/229 (77%), Gaps = 18/229 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L++ + + GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 FQFDLWNVQPSDRWDWKGLRKNVMEFGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HL++DL+EL LWD  MK++LI  NGS+Q+IE IP  LK+LYKTVWE
Sbjct: 625 NRRVLSGEFVVVNKHLIKDLIELNLWDARMKNKLIAENGSVQNIEEIPANLKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADRGAFI QSQSLN++MAE N AK++SMHF+ WK GLKTGMYYLRTK AA
Sbjct: 685 IKQKTIIDMAADRGAFICQSQSLNLFMAEPNMAKLTSMHFYAWKSGLKTGMYYLRTKAAA 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT++K +           S E+ Q D       + C  DN ++C+
Sbjct: 745 DAIKFTVEKVQ-----------SSEDKQVD-------ISCSLDNPDECI 775



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 65/87 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLEPWH DIFDFL L+KN GKEE RARDLF  LWIPD FM+RVE +A WSL  
Sbjct: 293 RKGAIAVYLEPWHADIFDFLNLRKNHGKEEMRARDLFPALWIPDLFMQRVEENADWSLFD 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN   GL D +G  F++LY+ YE +G+
Sbjct: 353 PNEAPGLYDVYGSSFEELYQHYENDGI 379



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 92/140 (65%), Gaps = 5/140 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +R+PF+  ++R LNK IFETIYY A+E+S E+A  +G Y++++GSP+S
Sbjct: 502 LGVQGLADVFLLLRMPFESEKARQLNKDIFETIYYAAMESSMELAKEEGAYESFKGSPLS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +G  Q+D+W V P+D WDW  L+   + +G++   ++L + + T  T  +L  + C    
Sbjct: 562 EGKFQFDLWNVQPSDRWDWKGLRKNVMEFGVR--NSLLVAPMPTASTSQILGNNECFEPY 619

Query: 710 KSNQQNLEVIEELYNMVNKE 729
            SN  N  V+   + +VNK 
Sbjct: 620 TSNIYNRRVLSGEFVVVNKH 639



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           FA+L ++I       L+K+     S    L     LY+ ++  T TR P++S++ Y+II 
Sbjct: 74  FAVLAARISVSN---LHKNTLKSFSKTAKL-----LYDYIDPVTNTRAPLLSEETYDIIR 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
            NAD ++S+IIYDRD+N+++FGFK
Sbjct: 126 NNADEIDSSIIYDRDYNFDYFGFK 149



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LW AIL++QIETGTPYM YKDA N KSNQ+N+ VI
Sbjct: 384 VKARELWNAILEAQIETGTPYMCYKDAANEKSNQKNIGVI 423


>gi|423133179|ref|ZP_17120826.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CIP 101113]
 gi|371649235|gb|EHO14716.1| ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           odoratimimus CIP 101113]
          Length = 797

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/508 (62%), Positives = 400/508 (78%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ LY KYE EGK  R + AR+LW A+L++QIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEGKGRRTIKARELWEAVLEAQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG I+ SNLCTEI+EYTS DEVAVCNLASI+L M++   D  +N   L DV K
Sbjct: 412 AKSNQKNLGVIRSSNLCTEIMEYTSPDEVAVCNLASISLPMFVE--DGQFNHQFLFDVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVEEA NSNMRHRP+G+GVQGLAD FI MR+PF   E++ LN++I
Sbjct: 470 RITRNLNRVIDRNYYPVEEAYNSNMRHRPVGLGVQGLADAFIMMRMPFTSPEAKQLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIY+ AL AS E+A  +G Y T+EGSP+S+G  QY+MWGV   +L   WDWA+L++++
Sbjct: 530 FETIYFAALTASMEMAKEEGAYSTFEGSPISKGEFQYNMWGVKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
              GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL+DLVEL
Sbjct: 590 MASGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++  NGSIQ I+ IP  +++LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRANGSIQHIDFIPADIRELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR- 566
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K  N  A ++   
Sbjct: 710 NLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLNNEKKTNPNAIEEVGQ 769

Query: 567 -SQEEIQADQEQA-MAAMICRRDNKEDC 592
            S E+ QA  ++A MAA     +N EDC
Sbjct: 770 VSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 138/234 (58%), Positives = 181/234 (77%), Gaps = 11/234 (4%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWGV   +L   WDWA+L++++   GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGVKDEELSGRWDWASLRKEVMASGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL+DLVELGLW++++K +++  NGSIQ I+ IP  +++LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLKDLVELGLWNEDLKQEIMRANGSIQHIDFIPADIRELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTR--SQEEIQADQEQA-MAAMICRRDNKEDC 996
            A +AI+FT++  K  N  A ++    S E+ QA  ++A MAA     +N EDC
Sbjct: 744 SAVDAIKFTLNNEKKTNPNAIEEVGQVSVEDYQAMLQRARMAA-----NNDEDC 792



 Score =  139 bits (350), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+FDF+EL+KN GKEE RARDLF  LWI D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADVFDFIELRKNHGKEEMRARDLFLALWINDLFMQRVEADEKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ LY KYE EG
Sbjct: 352 PNECPGLCDVYGEEFEQLYLKYENEG 377



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR+PF   E++ LN++IFETIY+ AL AS E+A  +G Y T+EGSP+S
Sbjct: 501 LGVQGLADAFIMMRMPFTSPEAKQLNQEIFETIYFAALTASMEMAKEEGAYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWGV   +L   WDWA+L+   +  G++
Sbjct: 561 KGEFQYNMWGVKDEELSGRWDWASLRKEVMASGVR 595



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E +E+LY  VN  TG   P+I+D  YE+I K+ +RL+S IIY RDFNY++FGFK
Sbjct: 95  ETVEDLYRYVNPRTGQEAPLIADDVYEVIKKHGERLDSTIIYQRDFNYDYFGFK 148



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW A+L++QIETGTPYMLYKDA N KSNQ+NL VI
Sbjct: 387 ELWEAVLEAQIETGTPYMLYKDAANAKSNQKNLGVI 422


>gi|348672398|gb|EGZ12218.1| hypothetical protein PHYSODRAFT_246827 [Phytophthora sojae]
          Length = 788

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/484 (62%), Positives = 391/484 (80%), Gaps = 3/484 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+F+FL+L+KN G E  RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WGE+F+ LY+KYE EG+  + + A++LWFAILD+QIETG P+MLYKDA N
Sbjct: 353 PNEAPGLYECWGEEFETLYEKYEKEGRARKTINAQQLWFAILDAQIETGVPFMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+ SNLC E++EYTS DEVAVCNLAS+AL  ++   +  +++ KL +V K
Sbjct: 413 RKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVE--EGVFDYQKLYEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNK+IDVN+YPV EAR SNMRHRPIGIGVQGLAD FI M   F+  E+R LNK+I
Sbjct: 471 VITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNFAFESEEARELNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT-DLWDWAALKEKIAK 389
           FETIYY A+E S EIA   GPY+T++GSP S+GI Q+DMWGVTP+ DLW+WAALKE + K
Sbjct: 531 FETIYYAAMETSMEIAKELGPYETFQGSPASKGIFQFDMWGVTPSSDLWNWAALKENVIK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGNNES EPYTSN+Y+RRVL+GEF +VN +L+++L+ELG+
Sbjct: 591 HGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAGEFTIVNKYLMKELIELGI 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W  ++++Q++ + GS+Q ++ IP  +K+ YKTVWEI QK VLD++ADRGA+I QSQSLNI
Sbjct: 651 WTPDVRNQILNDGGSVQKVKAIPDHVKEKYKTVWEIKQKAVLDLSADRGAYICQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++A+   +K++SMHF+ WK GLKTGMYY+R +P A+AI+FT+DK  +    A+     Q 
Sbjct: 711 HIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIKFTVDKQGLDLQPATPAPAPQT 770

Query: 570 EIQA 573
           E  A
Sbjct: 771 ETVA 774



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/210 (59%), Positives = 171/210 (81%), Gaps = 1/210 (0%)

Query: 769 FKYDMWGVTPT-DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP+ DLW+WAALKE + KHG+RNSLL+APMPTASTAQILGNNES EPYTSN+
Sbjct: 565 FQFDMWGVTPSSDLWNWAALKENVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNM 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEF +VN +L+++L+ELG+W  ++++Q++ + GS+Q ++ IP  +K+ YKTVW
Sbjct: 625 YNRRVLAGEFTIVNKYLMKELIELGIWTPDVRNQILNDGGSVQKVKAIPDHVKEKYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK VLD++ADRGA+I QSQSLNI++A+   +K++SMHF+ WK GLKTGMYY+R +P 
Sbjct: 685 EIKQKAVLDLSADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPK 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQA 977
           A+AI+FT+DK  +    A+     Q E  A
Sbjct: 745 ADAIKFTVDKQGLDLQPATPAPAPQTETVA 774



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+F+FL+L+KN G E  RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WGE+F+ LY+KYE EG
Sbjct: 353 PNEAPGLYECWGEEFETLYEKYEKEG 378



 Score =  125 bits (315), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/159 (44%), Positives = 100/159 (62%), Gaps = 13/159 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI M   F+  E+R LNK+IFETIYY A+E S EIA   GPY+T++GSP S
Sbjct: 502 IGVQGLADAFILMNFAFESEEARELNKKIFETIYYAAMETSMEIAKELGPYETFQGSPAS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK- 710
           +GI Q+DMWGVTP +DLW+WAALK   + +GL+   ++L + + T +   +  +  + + 
Sbjct: 562 KGIFQFDMWGVTPSSDLWNWAALKENVIKHGLR--NSLLVAPMPTASTAQILGNNESIEP 619

Query: 711 --SNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
             SN  N  V+   + +VNK       E G  TP + ++
Sbjct: 620 YTSNMYNRRVLAGEFTIVNKYLMKELIELGIWTPDVRNQ 658



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWFAILD+QIETG P+MLYKDA NRKSNQQNL  I
Sbjct: 388 QLWFAILDAQIETGVPFMLYKDAANRKSNQQNLGTI 423



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 46/63 (73%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +N+   + IE  +  ++++TG   P+I+D  YEI+M++ D LNSAII+DRDF Y++F
Sbjct: 87  HKNTNKVFSDNIEVFHKNIHEKTGAAAPLIADDVYEIVMQHKDELNSAIIHDRDFEYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149


>gi|301112881|ref|XP_002998211.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
 gi|262112505|gb|EEY70557.1| ribonucleoside-diphosphate reductase large subunit [Phytophthora
           infestans T30-4]
          Length = 793

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/505 (60%), Positives = 400/505 (79%), Gaps = 10/505 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+F+FL+L+KN G E  RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + WG++F+ LY+KYE EG+  + + A++LWFAILD+QIETG P+MLYKDA N
Sbjct: 353 PNEAPGLYECWGDEFETLYEKYETEGRARKTINAQQLWFAILDAQIETGVPFMLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+ SNLC E++EYTS DEVAVCNLAS+AL  ++   D  +++ KL +V K
Sbjct: 413 RKSNQQNLGTIRSSNLCCEVMEYTSPDEVAVCNLASVALPKFVE--DAVFDYRKLYEVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNK+IDVN+YPV EAR SNMRHRPIGIGVQGLAD FI M  PF+  +++ LNK I
Sbjct: 471 VITRNLNKVIDVNYYPVAEARKSNMRHRPIGIGVQGLADAFILMNYPFESPQAQELNKNI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+E S EIA   GPY+T++GSP S+GI Q+DMWGVTP + LW+WAALK+ + K
Sbjct: 531 FETIYFAAMETSMEIAVELGPYETFQGSPASKGIFQFDMWGVTPQSGLWNWAALKDDVIK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGNNES EPYTSN+Y+RRVL+GEF +VN HL+++L+ELG+
Sbjct: 591 HGLRNSLLVAPMPTASTAQILGNNESIEPYTSNMYNRRVLAGEFTIVNKHLMKELIELGI 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   +++Q++ + GS+Q I+ IP+ +K+ YKTVWEI QK VLD++ADRGA+I QSQSLNI
Sbjct: 651 WTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVWEIKQKAVLDLSADRGAYICQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++A+   +K++SMHF+ WK GLKTGMYY+R +P A+AIQFT+DK  +         R++E
Sbjct: 711 HIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPKADAIQFTVDKQGI------DLQRAKE 764

Query: 570 EIQADQEQAMAAMICRR-DNKEDCI 593
           E         A  + R  D++++C+
Sbjct: 765 EATKTAPTPAAETVTRAGDDEDECL 789



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 130/231 (56%), Positives = 180/231 (77%), Gaps = 8/231 (3%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMWGVTP + LW+WAALK+ + KHG+RNSLL+APMPTASTAQILGNNES EPYTSN+
Sbjct: 565 FQFDMWGVTPQSGLWNWAALKDDVIKHGLRNSLLVAPMPTASTAQILGNNESIEPYTSNM 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEF +VN HL+++L+ELG+W   +++Q++ + GS+Q I+ IP+ +K+ YKTVW
Sbjct: 625 YNRRVLAGEFTIVNKHLMKELIELGIWTPEVRNQILNDGGSVQKIKTIPEDVKEKYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK VLD++ADRGA+I QSQSLNI++A+   +K++SMHF+ WK GLKTGMYY+R +P 
Sbjct: 685 EIKQKAVLDLSADRGAYICQSQSLNIHIADPTISKLTSMHFYAWKKGLKTGMYYMRGRPK 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRR-DNKEDCL 997
           A+AIQFT+DK  +         R++EE         A  + R  D++++CL
Sbjct: 745 ADAIQFTVDKQGI------DLQRAKEEATKTAPTPAAETVTRAGDDEDECL 789



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+F+FL+L+KN G E  RARDLFY LW+PD FM+RVE++ +WSL C
Sbjct: 293 RKGSFAIYLEPWHADVFEFLDLRKNHGNELHRARDLFYALWVPDLFMKRVEANGKWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + WG++F+ LY+KYE EG
Sbjct: 353 PNEAPGLYECWGDEFETLYEKYETEG 378



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 13/159 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI M  PF+  +++ LNK IFETIY+ A+E S EIA   GPY+T++GSP S
Sbjct: 502 IGVQGLADAFILMNYPFESPQAQELNKNIFETIYFAAMETSMEIAVELGPYETFQGSPAS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK- 710
           +GI Q+DMWGVTP + LW+WAALK   + +GL+   ++L + + T +   +  +  + + 
Sbjct: 562 KGIFQFDMWGVTPQSGLWNWAALKDDVIKHGLR--NSLLVAPMPTASTAQILGNNESIEP 619

Query: 711 --SNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
             SN  N  V+   + +VNK       E G  TP + ++
Sbjct: 620 YTSNMYNRRVLAGEFTIVNKHLMKELIELGIWTPEVRNQ 658



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWFAILD+QIETG P+MLYKDA NRKSNQQNL  I
Sbjct: 388 QLWFAILDAQIETGVPFMLYKDAANRKSNQQNLGTI 423



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 45/63 (71%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +N+   + IE  +   +++TG   P+I+D  YEI+M++ D LNSAII+DRDF Y++F
Sbjct: 87  HKNTNKVFSDNIEVFHKNAHEKTGAAAPLIADDVYEIVMQHKDELNSAIIHDRDFEYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149


>gi|374596273|ref|ZP_09669277.1| ribonucleoside-diphosphate reductase, alpha subunit [Gillisia
           limnaea DSM 15749]
 gi|373870912|gb|EHQ02910.1| ribonucleoside-diphosphate reductase, alpha subunit [Gillisia
           limnaea DSM 15749]
          Length = 813

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/466 (65%), Positives = 384/466 (82%), Gaps = 5/466 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE DA+W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDAKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +  G++FD LY KYE+EGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPNLYNIHGDEFDALYLKYESEGKGRKTIRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+ SNLCTEI+E+TS DE+AVCNLASIAL M+I    K ++  +L  + K
Sbjct: 412 RKSNQQNLGTIRSSNLCTEIMEFTSPDEIAVCNLASIALPMFIK--GKEFDHKELFKITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLN++ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI++R+PF   E++ LN++I
Sbjct: 470 RVTRNLNRVIDRNYYPVKEAENSNMRHRPIGLGVQGLADTFIKLRMPFTSEEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T++GSP+S+G  Q+++WGV   +L   WDWA L++++
Sbjct: 530 FETLYFAAVTASMELAQEEGPYSTFKGSPISKGQFQHNLWGVEDEELSGRWDWAKLRKQV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVEL
Sbjct: 590 VKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLDDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
            LW D++KD ++  NGS+QDI+ IPQ LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 NLWTDDVKDAIMRANGSVQDIDVIPQDLKELYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           N++M   NY+K++SMHF+GWK GLKTGMYYLRTK A +AI+FT+ K
Sbjct: 710 NLFMENANYSKLTSMHFYGWKSGLKTGMYYLRTKSAVDAIKFTLKK 755



 Score =  278 bits (710), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 127/192 (66%), Positives = 161/192 (83%), Gaps = 3/192 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WGV   +L   WDWA L++++ K+GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQHNLWGVEDEELSGRWDWAKLRKQVVKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVEL LW D++KD ++  NGS+QDI+ IPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLDDLVELNLWTDDVKDAIMRANGSVQDIDVIPQDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+GWK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYGWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDK 957
            A +AI+FT+ K
Sbjct: 744 SAVDAIKFTLKK 755



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE DA+W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDAKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L +  G++FD LY KYE+EG
Sbjct: 352 PNECPNLYNIHGDEFDALYLKYESEG 377



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF   E++ LN++IFET+Y+ A+ AS E+A  +GPY T++GSP+S
Sbjct: 501 LGVQGLADTFIKLRMPFTSEEAKKLNQEIFETLYFAAVTASMELAQEEGPYSTFKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+++WGV   +L   WDWA L+   +  G++
Sbjct: 561 KGQFQHNLWGVEDEELSGRWDWAKLRKQVVKNGVR 595



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +A L ++I       L+K   N K N    EV+ +
Sbjct: 49  GVTTSELDNLAA-EVSATMTTSHPDYAKLAARISVSN---LHK---NTKKNFS--EVMTD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P+++D+ +++I +N + L+S IIY+RDFNY++FGFK
Sbjct: 100 LYEYVNPRTGKKAPLLADEVFKVIQENKELLDSTIIYNRDFNYDYFGFK 148



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQQNL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQQNLGTI 422


>gi|120437795|ref|YP_863481.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
 gi|117579945|emb|CAL68414.1| ribonucleoside-diphosphate reductase large chain [Gramella forsetii
           KT0803]
          Length = 819

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/522 (59%), Positives = 404/522 (77%), Gaps = 12/522 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +W+PD FM+RVE + +W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D++GE+F+ LY+KYEAE K  + + AR+LW  I +SQIETGTPYMLYKDA N
Sbjct: 352 PQECPGLFDTYGEEFEKLYEKYEAENKGRKTIKARELWEKITESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   +  ++  +L  + K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEILEYTSPDEVAVCNLASIALPMFIKGNE--FDHKELFKITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSNMRHRP+G+GVQGLAD FI++R+PF  ++++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADTFIKLRMPFTSDKAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T++GSP+S+G  QY++WG+   DL   WDW  L++++
Sbjct: 530 FETLYFAAVTASMELAKEEGPYSTFKGSPISEGEFQYNLWGIKDEDLSGRWDWGKLRKQV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV  
Sbjct: 590 MKEGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVSR 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
            LWDD +K+ ++ NNGS+QDI+ IP  LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 NLWDDEVKNAIMRNNGSVQDIDIIPDDLKELYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN---AMASKD 564
           N++M   NY+K++SMHF+ WK GLKTGMYYLRTK A +AI+FT++K K      A++   
Sbjct: 710 NLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLEKEKKKEPIVAVSEAP 769

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMR 606
           A++ E++QA    A   +I +    E  +  + L  +  Q +
Sbjct: 770 AKAAEKLQA----APKPVISQESEAEGALSPEELRAIIAQSK 807



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 168/215 (78%), Gaps = 6/215 (2%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   DL   WDW  L++++ K GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGIKDEDLSGRWDWGKLRKQVMKEGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV   LWDD +K+ ++ NNGS+QDI+ IP  LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVSRNLWDDEVKNAIMRNNGSVQDIDIIPDDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMAN---AMASKDTRSQEEIQA 977
            A +AI+FT++K K      A++    ++ E++QA
Sbjct: 744 SAVDAIKFTLEKEKKKEPIVAVSEAPAKAAEKLQA 778



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 72/85 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +W+PD FM+RVE + +W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMPDLFMKRVEQNEKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P  C GL D++GE+F+ LY+KYEAE
Sbjct: 352 PQECPGLFDTYGEEFEKLYEKYEAE 376



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF  ++++ LN++IFET+Y+ A+ AS E+A  +GPY T++GSP+S
Sbjct: 501 LGVQGLADTFIKLRMPFTSDKAKKLNQEIFETLYFAAVTASMELAKEEGPYSTFKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY++WG+   DL   WDW  L+   +  G++
Sbjct: 561 EGEFQYNLWGIKDEDLSGRWDWGKLRKQVMKEGVR 595



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 44/54 (81%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +LY  VN  TG + P++SD+ Y++I++N ++L+S IIY+RDF+Y++FGFK
Sbjct: 95  EVMTDLYEYVNPRTGEKAPLLSDEVYKVIIENKEKLDSTIIYNRDFSYDYFGFK 148



 Score = 59.7 bits (143), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  I +SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKITESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|298207003|ref|YP_003715182.1| ribonucleoside-diphosphate reductase large chain [Croceibacter
           atlanticus HTCC2559]
 gi|83849637|gb|EAP87505.1| probable ribonucleoside-diphosphate reductase large chain
           [Croceibacter atlanticus HTCC2559]
          Length = 840

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/503 (61%), Positives = 394/503 (78%), Gaps = 17/503 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE D  W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +   E+FD+LY KYE+E K  + + AR LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPNLFNVHSEEFDELYLKYESENKGRKTIKARVLWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M++   +  ++  +L  + K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVK--NGAFDHKELFRITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSN RHRP+G+G+QGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKTLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY +YEGSP+S+G  QY++WG+   +L   WDWA L++K+
Sbjct: 530 FETLYFAAVTASMELAIEEGPYSSYEGSPISKGEFQYNLWGIKDEELSGRWDWAGLRQKV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            ++GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 LENGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K+ ++  NGSIQ+I+GIPQ LK+LYKTV+E+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKTVYELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN--------- 558
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT++K K A          
Sbjct: 710 NLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTKAAVDAIKFTVEKAKKAEPQPQQQEVA 769

Query: 559 ---AMASKDARSQEEIQADQEQA 578
              A   + A++Q E QA   QA
Sbjct: 770 AKAAETLQQAKTQLEPQAQTVQA 792



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/196 (64%), Positives = 165/196 (84%), Gaps = 3/196 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   +L   WDWA L++K+ ++GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGIKDEELSGRWDWAGLRQKVLENGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW++++K+ ++  NGSIQ+I+GIPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVNLGLWNNDLKNAIMRANGSIQNIDGIPQDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           V+E+  K ++DM+  RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VYELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYAKLTSMHFYAWKNGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMA 961
            A +AI+FT++K K A
Sbjct: 744 AAVDAIKFTVEKAKKA 759



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE D  W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEEDGNWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C  L +   E+FD+LY KYE+E
Sbjct: 352 PNECPNLFNVHSEEFDELYLKYESE 376



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY +YEGSP+S
Sbjct: 501 LGIQGLADAFIMLRMPFTSDEAKTLNQEIFETLYFAAVTASMELAIEEGPYSSYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY++WG+   +L   WDWA L+   L  G++
Sbjct: 561 KGEFQYNLWGIKDEELSGRWDWAGLRQKVLENGVR 595



 Score = 70.5 bits (171), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT +DL + AA    ++       +A L ++I       L+KD     S     EV+ +
Sbjct: 49  GVTTSDLDNLAAETAASMTVS-HPDYAKLAARISVSN---LHKDTKKTFS-----EVMTD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P++SD+ Y++I  N DRL+S IIY+RD+ Y++FGFK
Sbjct: 100 LYEYVNPRTGKKAPLLSDEVYKVIQDNKDRLDSTIIYNRDYGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 388 LWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|365765120|gb|EHN06634.1| Rnr3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 885

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/518 (59%), Positives = 400/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 428 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 487

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+   ++ L
Sbjct: 488 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEXAQTL 547

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 548 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 607

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 608 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 667

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 668 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 727

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 728 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 786

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 787 VSELDRPVYVPKGTKFXEQKAASALTESSDNEKDASPV 824



 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 586 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AIQFTID+    + A  +AS     +     +  +  +++A +A+    DN++D 
Sbjct: 766 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFXEQKAASALTESSDNEKDA 821



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREG 394



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+   ++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 522 ALGVQGLADTYMMLRLPFESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 581

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 582 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 614



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 55  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 105

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 106 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 165



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP +   L  D+WG    +L+  +        +   KLW+AIL +Q ETGT
Sbjct: 361 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 417

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 418 PFMVYKDACNRKTNQQNLGTIK 439


>gi|323452424|gb|EGB08298.1| hypothetical protein AURANDRAFT_37557 [Aureococcus anophagefferens]
          Length = 793

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/475 (62%), Positives = 387/475 (81%), Gaps = 7/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 299 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWSLMC 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D  G +F+ LY++YEAEG+  + +PA++LWFAILDSQ+ETGTPYMLYKDACN
Sbjct: 359 PNECPGLADCHGAEFEALYERYEAEGRARKAIPAQQLWFAILDSQVETGTPYMLYKDACN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD--KTYNFTKLKDV 268
            KSNQ++LGTIK SNLCTEIVEYT+ DE+AVC LASI L ++++ A    T++F KLK  
Sbjct: 419 DKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATFDFAKLKRT 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A +VTKNLNK++DVN+YPVEEA++SN++HRP+GIGVQG+AD   ++R P++ ++++ +N+
Sbjct: 479 AYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINR 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            +FETIY+GA+EAS ++A   GPY +Y GSP SQG+ Q+D+W V P+D WDW  L+ ++ 
Sbjct: 539 DVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWNVKPSDRWDWEGLRARLG 598

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG RNSLL+APMPTASTAQILGNNESFEP+TSN+Y+RRVL+GEF VVN +LLRDL+ LG
Sbjct: 599 EHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMYTRRVLAGEFAVVNKYLLRDLIALG 658

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++Q+I + GS+Q +  IP  LK LYKT WEI QK VLDM+ADRGAFI QSQSLN
Sbjct: 659 LWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCVLDMSADRGAFICQSQSLN 718

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           +++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A+AI FT+D+     AMA+K
Sbjct: 719 LHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFTVDQ-----AMAAK 768



 Score =  278 bits (712), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 161/199 (80%), Gaps = 5/199 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L+ ++ +HG RNSLL+APMPTASTAQILGNNESFEP+TSN+Y
Sbjct: 575 FQFDLWNVKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMY 634

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN +LLRDL+ LGLW   +++Q+I + GS+Q +  IP  LK LYKT WE
Sbjct: 635 TRRVLAGEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWE 694

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDM+ADRGAFI QSQSLN+++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A
Sbjct: 695 IKQKCVLDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKA 754

Query: 949 NAIQFTIDKTKMANAMASK 967
           +AI FT+D+     AMA+K
Sbjct: 755 DAIAFTVDQ-----AMAAK 768



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 299 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWSLMC 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D  G +F+ LY++YEAEG
Sbjct: 359 PNECPGLADCHGAEFEALYERYEAEG 384



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD   ++R P++ ++++ +N+ +FETIY+GA+EAS ++A   GPY +Y GSP S
Sbjct: 512 IGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTS 571

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+ Q+D+W V P+D WDW  L+     +G +
Sbjct: 572 QGLFQFDLWNVKPSDRWDWEGLRARLGEHGCR 603



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQ+ETGTPYMLYKDACN KSNQ++L  I+
Sbjct: 394 QLWFAILDSQVETGTPYMLYKDACNDKSNQKHLGTIK 430



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++Q    GVT  +L D  A +  A +      F++L ++I       L+K   N  
Sbjct: 45  ITQKVIQGVYDGVTTHEL-DELAAQTTAYMATQHPDFSVLAARISVSN---LHKSTDNTF 100

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +V+E+L+  ++ +T     +ISD+ Y  + K+ D +N+AI+Y+RDF Y++FGFK
Sbjct: 101 S-----DVVEKLHKHMHPKTKKPAALISDETYATVQKHKDAINAAIVYERDFEYDYFGFK 155


>gi|401625263|gb|EJS43279.1| rnr3p [Saccharomyces arboricola H-6]
          Length = 869

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/483 (62%), Positives = 386/483 (79%), Gaps = 6/483 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGAWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F+ LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 353 PSAAPGLDDVWGDEFEALYTRYETEGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     TYNF  L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVELSEDGKTATYNFESLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNMRHRPI +GVQGLAD ++ +RLPF+ +E++ L
Sbjct: 472 EIAKVITHNLNRVIDRNYYPVPEARNSNMRHRPIALGVQGLADTYMMLRLPFESDEAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVEHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITENGSIQGLPNVPQVLKELYKTVWEISQKTIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 712 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 770

Query: 567 SQE 569
           + E
Sbjct: 771 AAE 773



 Score =  273 bits (697), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 154/189 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I +HG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLRKDIVEHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITENGSIQGLPNVPQVLKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGAWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F+ LY +YE EG
Sbjct: 353 PSAAPGLDDVWGDEFEALYTRYETEG 378



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+ +E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 506 ALGVQGLADTYMMLRLPFESDEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLRKDIVEHGLR 598



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFKYTYFGFK 149



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+M+YKDACNRK+NQQNL  I+
Sbjct: 387 KLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIK 423


>gi|406604711|emb|CCH43846.1| ribonucleoside-diphosphate reductase subunit M1 [Wickerhamomyces
           ciferrii]
          Length = 833

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/466 (64%), Positives = 384/466 (82%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+ V+ D  W L  
Sbjct: 296 RPGAFAVYVEPWHSDIFEFLDLRKNHGKEEMRARDLFYALWIPDLFMKAVKEDDDWHLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL+D +GE F+ LY++Y  EG   R V A+KLW+AIL+SQ ETG P+MLYKDACN
Sbjct: 356 PNEAKGLTDVYGEDFEKLYEQYVKEGLATRTVKAQKLWYAILESQTETGGPFMLYKDACN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+NLGTIK SNLC E+VEY+SKDEVAVCNLAS+AL  Y++  D    +NF KL DV
Sbjct: 416 IKSNQKNLGTIKSSNLCCEVVEYSSKDEVAVCNLASVALPSYVSYEDNIMWFNFNKLHDV 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLNK+IDV  YP+ EA NSN++HRPI +GVQGLADLF+++RLPF+ +E++LLN 
Sbjct: 476 VKVVTRNLNKVIDVGKYPIPEAENSNLKHRPIAVGVQGLADLFMELRLPFESSEAKLLNI 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ ++EAS E+A +DG Y+++ GSP SQG LQ+D+W   PTDL+DW ALK K+ 
Sbjct: 536 QIFETIYHASVEASIELAQKDGAYKSFIGSPASQGQLQFDLWNHKPTDLYDWDALKAKVR 595

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+APMPTAST+QILG  E FEP TSN+YSRRVLSGEFQ+VN +L++DL++LG
Sbjct: 596 AHGLRNSLLVAPMPTASTSQILGFTECFEPLTSNVYSRRVLSGEFQIVNKYLIKDLIDLG 655

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD N+K+Q++ +NGSIQDI+ IPQ++K+LYKTVWEI QK ++++AADR  FIDQSQS+N
Sbjct: 656 IWDLNLKNQIVDSNGSIQDIKTIPQEIKELYKTVWEISQKNIINLAADRAPFIDQSQSMN 715

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           I++ E    K++SMHF+GW  GLKTGMYYLRT+ A+ AI+FTID++
Sbjct: 716 IHIKEPTMRKLTSMHFYGWSKGLKTGMYYLRTQAASEAIKFTIDRS 761



 Score =  275 bits (704), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 121/190 (63%), Positives = 161/190 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   PTDL+DW ALK K+  HG+RNSLL+APMPTAST+QILG  E FEP TSN+Y
Sbjct: 572 LQFDLWNHKPTDLYDWDALKAKVRAHGLRNSLLVAPMPTASTSQILGFTECFEPLTSNVY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +L++DL++LG+WD N+K+Q++ +NGSIQDI+ IPQ++K+LYKTVWE
Sbjct: 632 SRRVLSGEFQIVNKYLIKDLIDLGIWDLNLKNQIVDSNGSIQDIKTIPQEIKELYKTVWE 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++++AADR  FIDQSQS+NI++ E    K++SMHF+GW  GLKTGMYYLRT+ A+
Sbjct: 692 ISQKNIINLAADRAPFIDQSQSMNIHIKEPTMRKLTSMHFYGWSKGLKTGMYYLRTQAAS 751

Query: 949 NAIQFTIDKT 958
            AI+FTID++
Sbjct: 752 EAIKFTIDRS 761



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+ V+ D  W L  
Sbjct: 296 RPGAFAVYVEPWHSDIFEFLDLRKNHGKEEMRARDLFYALWIPDLFMKAVKEDDDWHLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN  +GL+D +GE F+ LY++Y  EGL
Sbjct: 356 PNEAKGLTDVYGEDFEKLYEQYVKEGL 382



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 74/93 (79%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLADLF+++RLPF+ +E++LLN QIFETIY+ ++EAS E+A +DG Y+++ GSP 
Sbjct: 508 AVGVQGLADLFMELRLPFESSEAKLLNIQIFETIYHASVEASIELAQKDGAYKSFIGSPA 567

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG LQ+D+W   PTDL+DW ALK     +GL+
Sbjct: 568 SQGQLQFDLWNHKPTDLYDWDALKAKVRAHGLR 600



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL+SQ ETG P+MLYKDACN KSNQ+NL  I+
Sbjct: 387 VKAQKLWYAILESQTETGGPFMLYKDACNIKSNQKNLGTIK 427



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 23/143 (16%)

Query: 663 VTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEEL 722
           VT   L D A+ + LA +  L    AIL S++       L K+  ++ S     E  E+L
Sbjct: 54  VTTDQLIDLAS-ETLATLTTLHPDHAILASRLSVT---RLSKNIPSKFS-----ECTEKL 104

Query: 723 YNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKY----------D 772
           +N  NK+T + +P+IS+K Y+I+ +N D L+S I  +RD ++ FFG +            
Sbjct: 105 WNFYNKKTKSHSPLISEKVYKIVQENKDLLDSVIDSERDLSFTFFGLETLKKSYLLKING 164

Query: 773 MWGVTPTDLWDWAALKEKIAKHG 795
           +W  TP  ++    L+  +  HG
Sbjct: 165 IWAETPQFMY----LRVSLGIHG 183


>gi|366993995|ref|XP_003676762.1| hypothetical protein NCAS_0E03350 [Naumovozyma castellii CBS 4309]
 gi|342302629|emb|CCC70405.1| hypothetical protein NCAS_0E03350 [Naumovozyma castellii CBS 4309]
          Length = 908

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/479 (62%), Positives = 387/479 (80%), Gaps = 6/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LW+PD FM+RV+ + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGQWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD +GE+F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PSSAPGLSDCYGEEFEALYTRYEREGRG-KTIKAQKLWYSILEAQTETGTPFIIYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 EKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T+NLNK+ID N+YPV EARNSNMRHRPI +GVQGLAD ++ +RLPF+  E++LL
Sbjct: 472 EIAKVITRNLNKVIDRNYYPVPEARNSNMRHRPIALGVQGLADTYMLLRLPFESEEAKLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ +LEASCE+A +DGPYQ++EGSP S+GILQ DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASLEASCELAQKDGPYQSFEGSPSSKGILQMDMWDKKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K+G RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKYGTRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  +I  NGSIQ++  +P +LK LYKT+WEI QKT++DMAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQHIITENGSIQNLPNVPDELKALYKTIWEISQKTIIDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ K+A+  A+  A
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-KIADQAAANIA 769



 Score =  266 bits (680), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 156/198 (78%), Gaps = 1/198 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L++ I K+G RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQMDMWDKKPYGMWDWDTLRKDIMKYGTRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  +I  NGSIQ++  +P +LK LYKT+WE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQHIITENGSIQNLPNVPDELKALYKTIWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIIDMAADRSIYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFTID+ K+A+  A+
Sbjct: 750 AAIQFTIDQ-KIADQAAA 766



 Score =  135 bits (341), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LW+PD FM+RV+ + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWVPDLFMKRVQENGQWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GLSD +GE+F+ LY +YE EG
Sbjct: 353 PSSAPGLSDCYGEEFEALYTRYEREG 378



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++LLN QIFETIY+ +LEASCE+A +DGPYQ++EGSP 
Sbjct: 506 ALGVQGLADTYMLLRLPFESEEAKLLNIQIFETIYHASLEASCELAQKDGPYQSFEGSPS 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ DMW   P  +WDW  L+   + YG +
Sbjct: 566 SKGILQMDMWDKKPYGMWDWDTLRKDIMKYGTR 598



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 73/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT ++L + AA +  A +  +   +A+L +++             +++
Sbjct: 39  VTQRIISGVYEGVTTSELDNLAA-ETCAYMTTVHPDYAVLAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI++L++ +N  TG   P+ISD  Y+I+M+N D +NSAI+YDRDF +N+FGFK
Sbjct: 90  TTKQFSTVIQQLHDYINPATGKHAPLISDDVYDIVMENKDEINSAIVYDRDFQFNYFGFK 149



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACN KSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFIIYKDACNEKSNQKNLGVIK 423


>gi|225012155|ref|ZP_03702592.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
 gi|225003710|gb|EEG41683.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacteria
           bacterium MS024-2A]
          Length = 814

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/517 (60%), Positives = 398/517 (76%), Gaps = 18/517 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFLELKKN GKEE RARDLFY +W PD FM+RVE +A W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDLFYAMWTPDLFMKRVEENADWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +  G++FD +Y KYE+EG+  R + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPDLYNVHGDEFDAMYLKYESEGRGRRTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLASIAL M++   D  ++   L DV  
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVK--DGAFDHQALYDVTV 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID N+YPV EA+NSN RHRP+G+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTKNLNRVIDRNYYPVIEAQNSNFRHRPVGLGVQGLADAFIMLRLPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E A R+GPY+TY+GSP++ G  Q+++WG+   +L   WDWAAL++ +
Sbjct: 530 FETLYFAAVTASSEEAKREGPYETYKGSPIANGEFQHNLWGIKDEELSGRWDWAALRKTV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV+ 
Sbjct: 590 KKQGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDR 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+++MK +L+ NNGS+Q IEGIP+ LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDMKQELMRNNGSVQSIEGIPEDLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-KTK----------- 555
           N++M     AK++SMHF+GWK GLKTGMYYLRTK A +AI+FT+D K+K           
Sbjct: 710 NLFMEGATMAKLTSMHFYGWKSGLKTGMYYLRTKSAVDAIKFTLDTKSKAKVPEVEAAVG 769

Query: 556 -MANAMASKDARSQEEIQADQEQAMAAMICRRDNKED 591
            ++ A A K A++   ++    Q +  M+ +    ED
Sbjct: 770 AVSTATAGKAAQAPVPVEPLSPQELKQMLAQAKEGED 806



 Score =  279 bits (713), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 137/247 (55%), Positives = 180/247 (72%), Gaps = 18/247 (7%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDWAAL++ + K GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDEELSGRWDWAALRKTVKKQGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+ GLW+++MK +L+ NNGS+Q IEGIP+ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVDRGLWNEDMKQELMRNNGSVQSIEGIPEDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M     AK++SMHF+GWK GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYGWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTID-KTK------------MANAMASKDTRSQEEIQADQEQAMAAMICRRDN 992
            A +AI+FT+D K+K            ++ A A K  ++   ++    Q +  M+ +   
Sbjct: 744 SAVDAIKFTLDTKSKAKVPEVEAAVGAVSTATAGKAAQAPVPVEPLSPQELKQMLAQAKE 803

Query: 993 KE--DCL 997
            E  DCL
Sbjct: 804 GEDDDCL 810



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFLELKKN GKEE RARDLFY +W PD FM+RVE +A W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLELKKNHGKEEMRARDLFYAMWTPDLFMKRVEENADWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L +  G++FD +Y KYE+EG
Sbjct: 352 PNECPDLYNVHGDEFDAMYLKYESEG 377



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 67/86 (77%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ A+ AS E A R+GPY+TY+GSP++
Sbjct: 501 LGVQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAAVTASSEEAKREGPYETYKGSPIA 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
            G  Q+++WG+   +L   WDWAAL+
Sbjct: 561 NGEFQHNLWGIKDEELSGRWDWAALR 586



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E + +
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYAKLAARISVSN--------LHKNTKKSFSETMTD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P++SD+ ++II KNAD+L+S+IIY+RDF Y+FFGFK
Sbjct: 100 LYKYVNPRTGKKAPLLSDEVHDIIQKNADKLDSSIIYNRDFGYDFFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|323337188|gb|EGA78442.1| Rnr3p [Saccharomyces cerevisiae Vin13]
          Length = 885

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/518 (59%), Positives = 400/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 428 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 487

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+   ++ L
Sbjct: 488 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEXAQTL 547

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 548 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 607

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 608 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 667

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 668 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 727

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 728 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 786

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 787 VSELDRPVYVPKGTKFFEQKAASALTESSDNEKDASPV 824



 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 586 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 646 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 706 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 765

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 766 AAIQFTIDQ 774



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 369 PSAAPGLDDVWGDEFEELYTRYEREG 394



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+   ++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 522 ALGVQGLADTYMMLRLPFESEXAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 581

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 582 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 614



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 55  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 105

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 106 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 165



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP +   L  D+WG    +L+  +        +   KLW+AIL +Q ETGT
Sbjct: 361 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 417

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 418 PFMVYKDACNRKTNQQNLGTIK 439


>gi|86134367|ref|ZP_01052949.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
 gi|85821230|gb|EAQ42377.1| ribonucleoside-diphosphate reductase large subunit [Polaribacter
           sp. MED152]
          Length = 799

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/489 (62%), Positives = 387/489 (79%), Gaps = 6/489 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RV+ D +W+LMC
Sbjct: 292 RKGSFAMYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  L D++GE+F+ LY  YEA GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPHLYDTYGEEFERLYTSYEAAGKGRKTIKARELWEKILESQIETGTPYMLYKDAVN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP---ADKTYNFTKLKD 267
           RK+NQ+NLGTI+ SNLCTEI+EYT+KDEVAVCNLASIAL M+++     +K +N  KL D
Sbjct: 412 RKTNQKNLGTIRSSNLCTEIMEYTAKDEVAVCNLASIALPMFVSERENGEKYFNHKKLFD 471

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K VT+NL+ +ID NFYPV+EA NSN RHRP+G+G+QGLAD FI +RLPF  +E++ LN
Sbjct: 472 VTKKVTRNLDTVIDANFYPVKEAENSNFRHRPVGLGIQGLADTFINLRLPFTSDEAKKLN 531

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALK 384
           + IFET+YY A+ +S EIA    PY T++GSP+S+G  Q++MWGV   +L   WDW  L+
Sbjct: 532 QDIFETMYYAAVTSSMEIAKAKEPYSTFKGSPMSEGEFQFNMWGVNDNELSGNWDWDKLR 591

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           + + K+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DL
Sbjct: 592 KNVMKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDL 651

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           VELGLWD++MK+ ++  NGSIQ IE IP +L++LYKTVWE+  K ++DMA  RG FIDQS
Sbjct: 652 VELGLWDNDMKESIMRANGSIQHIEEIPSELRELYKTVWEMSMKDIIDMARHRGYFIDQS 711

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
           QSLN+++ + +Y K++SMHF+ WK GLKTGMYYLRTK A NAIQFT+ K K A  +  + 
Sbjct: 712 QSLNLFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTKSAVNAIQFTVSKEKKAEVIEEEK 771

Query: 565 ARSQEEIQA 573
             +  E +A
Sbjct: 772 PMTPAEFKA 780



 Score =  282 bits (722), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/212 (61%), Positives = 167/212 (78%), Gaps = 3/212 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+++MWGV   +L   WDW  L++ + K+GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 569 FQFNMWGVNDNELSGNWDWDKLRKNVMKYGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 628

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVELGLWD++MK+ ++  NGSIQ IE IP +L++LYKT
Sbjct: 629 NIYTRRVLSGEFIVVNKHLLEDLVELGLWDNDMKESIMRANGSIQHIEEIPSELRELYKT 688

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DMA  RG FIDQSQSLN+++ + +Y K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 689 VWEMSMKDIIDMARHRGYFIDQSQSLNLFLKDPDYGKLTSMHFYAWKSGLKTGMYYLRTK 748

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQA 977
            A NAIQFT+ K K A  +  +   +  E +A
Sbjct: 749 SAVNAIQFTVSKEKKAEVIEEEKPMTPAEFKA 780



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RV+ D +W+LMC
Sbjct: 292 RKGSFAMYLEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVQEDGEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D++GE+F+ LY  YEA G
Sbjct: 352 PHECPHLYDTYGEEFERLYTSYEAAG 377



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +RLPF  +E++ LN+ IFET+YY A+ +S EIA    PY T++GSP+S
Sbjct: 506 LGIQGLADTFINLRLPFTSDEAKKLNQDIFETMYYAAVTSSMEIAKAKEPYSTFKGSPMS 565

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q++MWGV   +L   WDW  L+   + YG++
Sbjct: 566 EGEFQFNMWGVNDNELSGNWDWDKLRKNVMKYGVR 600



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E +++LY  VN  T  + P+++D  YEII  NA++L+S IIY+RDFNY++FGFK
Sbjct: 95  ETMDDLYFYVNPRTEKKAPLLADDVYEIIKANAEKLDSTIIYNRDFNYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 658 YDMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           YD +G     L+    AA K    +   +LW  IL+SQIETGTPYMLYKDA NRK+NQ+N
Sbjct: 359 YDTYGEEFERLYTSYEAAGKGRKTIKARELWEKILESQIETGTPYMLYKDAVNRKTNQKN 418

Query: 716 LEVI 719
           L  I
Sbjct: 419 LGTI 422


>gi|338210538|ref|YP_004654587.1| ribonucleoside-diphosphate reductase subunit alpha [Runella
           slithyformis DSM 19594]
 gi|336304353|gb|AEI47455.1| ribonucleoside-diphosphate reductase, alpha subunit [Runella
           slithyformis DSM 19594]
          Length = 815

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/489 (62%), Positives = 391/489 (79%), Gaps = 4/489 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+FL+LK+N GKEE RARDLFY +WIPD FM+RVE++  WSL+C
Sbjct: 293 RKGSFAIYLEPWHADIFEFLDLKRNHGKEELRARDLFYAMWIPDLFMKRVEANDTWSLLC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+DS+G++F+ LY+KYE EGK  + + A+ LWFAI++SQIETGTPYMLYKD  N
Sbjct: 353 PHECPGLADSYGDEFEQLYEKYEREGKVRKTIKAQDLWFAIMESQIETGTPYMLYKDHAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTY---NFTKLKD 267
           RKSNQ+NLGTIK SNLCTEI+EYTS DEVAVCNLASI+L  ++      +   N  KL +
Sbjct: 413 RKSNQKNLGTIKSSNLCTEIMEYTSPDEVAVCNLASISLPKFVEQGTDGFLHFNHGKLFE 472

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           + K+VTKNLNKIID+N+YPV EA  SN RHRPIGIG+QGLAD F+ MR+PF+  E+R LN
Sbjct: 473 ITKVVTKNLNKIIDLNYYPVPEAERSNKRHRPIGIGIQGLADAFLMMRMPFESEEARRLN 532

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEK 386
           + I ETIY GA+ AS E+A   GPY+T++GSP+SQGI Q+DMW VTP +  W+W  L++ 
Sbjct: 533 EDIHETIYCGAMTASMELAKTQGPYETWKGSPISQGIFQFDMWNVTPKSGRWNWEQLRKD 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K GVRNSLL+APMPTAST+QILGNNE FEP+TSN+Y RRVLSGEF VVN +LL+DLV+
Sbjct: 593 VVKFGVRNSLLLAPMPTASTSQILGNNECFEPFTSNLYVRRVLSGEFIVVNKYLLKDLVK 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
            GLW+D+MK++L+ +NGS+Q I+ +P  LK+LYKT WEI QKT++DMAADRGA+I QSQS
Sbjct: 653 EGLWNDSMKNKLMAHNGSVQKIDEVPSHLKELYKTAWEIKQKTIVDMAADRGAYICQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LNI+M   NY K++SMHF+ WK GLKTGMYYLRT+ A +A++ T++K   A       A 
Sbjct: 713 LNIFMDNANYGKLTSMHFYAWKKGLKTGMYYLRTQAAVDAVKITVEKNSEAILEPVTTAV 772

Query: 567 SQEEIQADQ 575
           +++E+  ++
Sbjct: 773 AEKELNYEK 781



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 160/194 (82%), Gaps = 1/194 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW VTP +  W+W  L++ + K GVRNSLL+APMPTAST+QILGNNE FEP+TSN+
Sbjct: 570 FQFDMWNVTPKSGRWNWEQLRKDVVKFGVRNSLLLAPMPTASTSQILGNNECFEPFTSNL 629

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN +LL+DLV+ GLW+D+MK++L+ +NGS+Q I+ +P  LK+LYKT W
Sbjct: 630 YVRRVLSGEFIVVNKYLLKDLVKEGLWNDSMKNKLMAHNGSVQKIDEVPSHLKELYKTAW 689

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKT++DMAADRGA+I QSQSLNI+M   NY K++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 690 EIKQKTIVDMAADRGAYICQSQSLNIFMDNANYGKLTSMHFYAWKKGLKTGMYYLRTQAA 749

Query: 948 ANAIQFTIDKTKMA 961
            +A++ T++K   A
Sbjct: 750 VDAVKITVEKNSEA 763



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 75/88 (85%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+FL+LK+N GKEE RARDLFY +WIPD FM+RVE++  WSL+C
Sbjct: 293 RKGSFAIYLEPWHADIFEFLDLKRNHGKEELRARDLFYAMWIPDLFMKRVEANDTWSLLC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+ C GL+DS+G++F+ LY+KYE EG V
Sbjct: 353 PHECPGLADSYGDEFEQLYEKYEREGKV 380



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 69/93 (74%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ MR+PF+  E+R LN+ I ETIY GA+ AS E+A   GPY+T++GSP+S
Sbjct: 507 IGIQGLADAFLMMRMPFESEEARRLNEDIHETIYCGAMTASMELAKTQGPYETWKGSPIS 566

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QGI Q+DMW VTP +  W+W  L+   + +G++
Sbjct: 567 QGIFQFDMWNVTPKSGRWNWEQLRKDVVKFGVR 599



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KV   +    LWFAI++SQIETGTPYMLYKD  NRKSNQ+NL  I+
Sbjct: 379 KVRKTIKAQDLWFAIMESQIETGTPYMLYKDHANRKSNQKNLGTIK 424



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT  +L D  A +  A +      +AIL ++I       L+K+     S       +++
Sbjct: 50  GVTTAEL-DVLAAETAASMTTKHPDYAILAARIAISN---LHKNTLKSFS-----ATMKQ 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY   + +TG    +IS + ++II K+A  L+S IIYDRD+ Y++FG+K
Sbjct: 101 LYTYTDPKTGENASLISKEAHDIIRKHAALLDSTIIYDRDYGYDYFGYK 149


>gi|255530603|ref|YP_003090975.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter
           heparinus DSM 2366]
 gi|255343587|gb|ACU02913.1| ribonucleoside-diphosphate reductase, alpha subunit [Pedobacter
           heparinus DSM 2366]
          Length = 792

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/508 (61%), Positives = 392/508 (77%), Gaps = 9/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+  FL+L+KN GKEE RARDLFY LW+ D FMRRVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRRVEENGDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +GE+FD LY++YE EG+  + + A++LWFAILDSQIETGTPY+LYKDA N
Sbjct: 353 PHEAPGLADCFGEEFDALYERYEQEGRARKTIKAQELWFAILDSQIETGTPYLLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EYTSKDEVAVCNLAS+AL  ++   +  ++  KL DV  
Sbjct: 413 SKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFV--INGEFDHQKLYDVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLNKIID N+YPVEEARNSNMRHRP+G+GVQGLAD FI MRLPF+   +R+LNK+I
Sbjct: 471 QATVNLNKIIDYNYYPVEEARNSNMRHRPVGLGVQGLADAFILMRLPFESEGARILNKEI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+ AS ++A ++GPY+T++GSP+SQG  Q+D+W V P +  WDW  L+EK+ K
Sbjct: 531 FETIYFAAMTASHDLAVKNGPYETFKGSPLSQGKFQFDLWKVQPDSGRWDWETLREKVVK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            GV NSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV LGL
Sbjct: 591 DGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVALGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   MKD++I+ NGSIQDI  IP  +K+LYKTVWEI  ++++DMAADRGA+I QSQSLN+
Sbjct: 651 WTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMAADRGAYICQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++   N +K++SMHF+ WK GLKTGMYYLRT+ A+ A++FT++     N     +    E
Sbjct: 711 FINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQAGKNM----EPVIPE 766

Query: 570 EIQADQEQAMAAMICRRDNKEDCIGVQG 597
            I+   E+ +   +C  +  E CI   G
Sbjct: 767 HIEQSAEEIVEGPVCSME--EGCISCSG 792



 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 170/230 (73%), Gaps = 7/230 (3%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W V P +  WDW  L+EK+ K GV NSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDLWKVQPDSGRWDWETLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV LGLW   MKD++I+ NGSIQDI  IP  +K+LYKTVW
Sbjct: 625 YTRRVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  ++++DMAADRGA+I QSQSLN+++   N +K++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 685 EIKMRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAA 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           + A++FT++     N     +    E I+   E+ +   +C  +  E C+
Sbjct: 745 SQAVKFTVENQAGKNM----EPVIPEHIEQSAEEIVEGPVCSME--EGCI 788



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+  FL+L+KN GKEE RARDLFY LW+ D FMRRVE +  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVLSFLDLRKNHGKEELRARDLFYALWVCDLFMRRVEENGDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +GE+FD LY++YE EG
Sbjct: 353 PHEAPGLADCFGEEFDALYERYEQEG 378



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 104/178 (58%), Gaps = 16/178 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MRLPF+   +R+LNK+IFETIY+ A+ AS ++A ++GPY+T++GSP+S
Sbjct: 502 LGVQGLADAFILMRLPFESEGARILNKEIFETIYFAAMTASHDLAVKNGPYETFKGSPLS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR- 709
           QG  Q+D+W V P +  WDW  L+   +  G  ++ ++L + + T  T  +L  + C   
Sbjct: 562 QGKFQFDLWKVQPDSGRWDWETLREKVVKDG--VYNSLLVAPMPTASTSQILGNNECFEP 619

Query: 710 -KSNQQNLEVIEELYNMVNKE-------TGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
             SN     V+   + +VNK         G  TP + D+   II+ N    + A I D
Sbjct: 620 YTSNIYTRRVLSGEFIVVNKHLLKDLVALGLWTPAMKDR---IILANGSIQDIAEIPD 674



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQIETGTPY+LYKDA N KSNQQNL  I+
Sbjct: 388 ELWFAILDSQIETGTPYLLYKDAANSKSNQQNLGTIK 424



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA    +L       +A+L S+I       L+K+     S     + +E 
Sbjct: 50  GVTTSELDNLAAETAASLTTKHPD-YALLASRIAVSN---LHKNTTKSFS-----KTMEM 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN V+ +T     +I+D  +E+I KNAD L+S IIYDRDF +++FGFK
Sbjct: 101 LYNYVDSKTEKPASLIADDVWEVIEKNADILDSTIIYDRDFGFDYFGFK 149


>gi|187903102|ref|YP_001883393.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
 gi|187384751|gb|ACD03524.1| ribonucleoside diphosphate reductase large subunit, rr1 [Musca
           domestica salivary gland hypertrophy virus]
          Length = 785

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/468 (64%), Positives = 379/468 (80%), Gaps = 6/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+FL+L+KN G EE RARDLFY LWIPD FMRRVE D  WSLMC
Sbjct: 291 RMGSFAIYLEPWHADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQDGDWSLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  LS+ WGE F+ LY+ YE +G+ +R V AR LW AI++SQ+ETGTPYM+YKDACN
Sbjct: 351 PHKCPCLSEVWGESFEHLYEHYERKGRAVRTVKARALWHAIIESQVETGTPYMMYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQQNLGTI+CSNLCTEIVEYT+ DE+AVCNLAS+AL  ++        K ++F +L+
Sbjct: 411 RKSNQQNLGTIRCSNLCTEIVEYTAPDEIAVCNLASLALPKFVVSGTPDRPKHFDFEQLR 470

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +  +VT+NLN+IID+N+YPV EAR SN+RHRPIGIGVQGLAD F+ M +P++ +E+R L
Sbjct: 471 RIVHVVTRNLNRIIDINYYPVPEARRSNLRHRPIGIGVQGLADTFVLMGMPYESDEAREL 530

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD--LWDWAALK 384
           N++IFETIY+ ALE SC++A  +G Y ++ GSP S G LQ DMW V   D  +W+W  L+
Sbjct: 531 NRRIFETIYFAALETSCQLAKEEGVYDSFLGSPASIGTLQQDMWPVDVDDKPMWNWDELR 590

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
             I  +G+RNSLL+APMPTASTAQILGN ESFEP TSNIY RRVLSGEFQV+N HL++ L
Sbjct: 591 HNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSNIYVRRVLSGEFQVINRHLVQHL 650

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           ++LGLW ++M++++I   GS+QDIE IP +++ LYKTVWEI  + ++DMAADRG +IDQS
Sbjct: 651 IDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTVWEISGRRIIDMAADRGRYIDQS 710

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           QSLN+++AE NYAK+SSMHF+ W+ GLKTGMYYLRTK AANAIQFT+D
Sbjct: 711 QSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKAAANAIQFTVD 758



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/190 (64%), Positives = 156/190 (82%), Gaps = 2/190 (1%)

Query: 769 FKYDMWGVTPTD--LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            + DMW V   D  +W+W  L+  I  +G+RNSLL+APMPTASTAQILGN ESFEP TSN
Sbjct: 569 LQQDMWPVDVDDKPMWNWDELRHNIEMNGLRNSLLVAPMPTASTAQILGNTESFEPITSN 628

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEFQV+N HL++ L++LGLW ++M++++I   GS+QDIE IP +++ LYKTV
Sbjct: 629 IYVRRVLSGEFQVINRHLVQHLIDLGLWSESMRNRIIARRGSVQDIEEIPIEVRRLYKTV 688

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEI  + ++DMAADRG +IDQSQSLN+++AE NYAK+SSMHF+ W+ GLKTGMYYLRTK 
Sbjct: 689 WEISGRRIIDMAADRGRYIDQSQSLNMHVAEPNYAKLSSMHFYAWRAGLKTGMYYLRTKA 748

Query: 947 AANAIQFTID 956
           AANAIQFT+D
Sbjct: 749 AANAIQFTVD 758



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 74/106 (69%), Gaps = 4/106 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+FL+L+KN G EE RARDLFY LWIPD FMRRVE D  WSLMC
Sbjct: 291 RMGSFAIYLEPWHADIFEFLDLRKNHGIEEQRARDLFYALWIPDLFMRRVEQDGDWSLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDI 106
           P+ C  LS+ WGE F+ LY+ YE +G       A A+    WH  I
Sbjct: 351 PHKCPCLSEVWGESFEHLYEHYERKGRAVRTVKARAL----WHAII 392



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 2/94 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M +P++ +E+R LN++IFETIY+ ALE SC++A  +G Y ++ GSP S
Sbjct: 506 IGVQGLADTFVLMGMPYESDEARELNRRIFETIYFAALETSCQLAKEEGVYDSFLGSPAS 565

Query: 653 QGILQYDMWGVTPTD--LWDWAALKVLALVYGLK 684
            G LQ DMW V   D  +W+W  L+    + GL+
Sbjct: 566 IGTLQQDMWPVDVDDKPMWNWDELRHNIEMNGLR 599



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLAL--VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           ++WG +   L++    K  A+  V    LW AI++SQ+ETGTPYM+YKDACNRKSNQQNL
Sbjct: 359 EVWGESFEHLYEHYERKGRAVRTVKARALWHAIIESQVETGTPYMMYKDACNRKSNQQNL 418

Query: 717 EVIE 720
             I 
Sbjct: 419 GTIR 422


>gi|126131606|ref|XP_001382328.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
 gi|126094153|gb|ABN64299.1| Ribonucleoside-diphosphate reductase large chain 1 [Scheffersomyces
           stipitis CBS 6054]
          Length = 861

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/471 (65%), Positives = 387/471 (82%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +A W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F++LY++YE E +    + A+KLW++IL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLADVYGDEFEELYERYERENRGRSTIKAQKLWYSILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +KSNQ+NLG IK SNLC EIVEY+S +EVAVCNLASIAL  ++   D +  YNF KL +V
Sbjct: 413 KKSNQKNLGMIKSSNLCCEIVEYSSPEEVAVCNLASIALPSFVEKDDSSLWYNFEKLHEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VTKNLNKIID N+YPV EAR SNMR+RPI +GVQGLAD F+ +RLPFD  ++R LN 
Sbjct: 473 TKVVTKNLNKIIDRNYYPVPEARRSNMRNRPIALGVQGLADTFMALRLPFDSQQARELNI 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+E+S E+A  +GPY++YEGSP S+G+LQYD+W   PT+LWDW  LK+ ++
Sbjct: 533 QIFETIYHAAVESSIELAQIEGPYESYEGSPASKGLLQYDLWDRKPTELWDWDTLKQNLS 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVL+GEFQ+VN +LLRDLV+LG
Sbjct: 593 KHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFQIVNPYLLRDLVDLG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+D MK+ +I NNGS+Q +  +P ++K LYKTVWEI QK ++DMAADR AFIDQSQSLN
Sbjct: 653 IWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWEISQKHIIDMAADRAAFIDQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           I++ +    K++SMHF+GWK GLKTGMYYLRT+ AA AIQFT+DK     A
Sbjct: 713 IHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAAAAIQFTVDKNSAKTA 763



 Score =  291 bits (745), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 162/195 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT+LWDW  LK+ ++KHG+RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 569 LQYDLWDRKPTELWDWDTLKQNLSKHGLRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN +LLRDLV+LG+W+D MK+ +I NNGS+Q +  +P ++K LYKTVWE
Sbjct: 629 SRRVLAGEFQIVNPYLLRDLVDLGIWNDAMKNNIIANNGSVQGLANVPDEIKALYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR AFIDQSQSLNI++ +    K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 689 ISQKHIIDMAADRAAFIDQSQSLNIHIKDPTMGKLTSMHFYGWKRGLKTGMYYLRTQAAA 748

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+DK     A
Sbjct: 749 AAIQFTVDKNSAKTA 763



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F+ +RLPFD  ++R LN QIFETIY+ A+E+S E+A  +GPY++YE
Sbjct: 501 NRPIALGVQGLADTFMALRLPFDSQQARELNIQIFETIYHAAVESSIELAQIEGPYESYE 560

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+G+LQYD+W   PT+LWDW  LK     +GL+
Sbjct: 561 GSPASKGLLQYDLWDRKPTELWDWDTLKQNLSKHGLR 597



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +A W+L  
Sbjct: 293 RPGAFALYLEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNADWTLFS 352

Query: 61  PNACRGLSDSWGEKF 75
           PN   GL+D +G++F
Sbjct: 353 PNEAPGLADVYGDEF 367



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++     GVT  +L + AA +  A +  +   +AIL ++I             +++
Sbjct: 39  ITQRVISGVYHGVTTIELDNLAA-ETAAYMTTIHPDYAILAARIAVSN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   V +ELY+ +N +TG  +PMIS + Y+II+K+ D LNSAI+YDRDFNYN+FGFK
Sbjct: 90  TTKQYSSVSKELYDYINPKTGLHSPMISKETYDIILKHTDELNSAIVYDRDFNYNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+MLYKDACN+KSNQ+NL +I+
Sbjct: 388 KLWYSILEAQTETGTPFMLYKDACNKKSNQKNLGMIK 424


>gi|190406283|gb|EDV09550.1| ribonucleotide reductase [Saccharomyces cerevisiae RM11-1a]
 gi|256269776|gb|EEU05042.1| Rnr3p [Saccharomyces cerevisiae JAY291]
          Length = 869

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/518 (59%), Positives = 400/518 (77%), Gaps = 15/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +L 
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+   ++ L
Sbjct: 472 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEVAQTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  A 
Sbjct: 712 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 770

Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
             E           +  +++A +A+    DN++D   V
Sbjct: 771 VSELDRPVYVPKGTKFFEQKAASALTESSDNEKDASPV 808



 Score =  275 bits (704), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D WG++F++LY +YE EG
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREG 378



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+   ++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 506 ALGVQGLADTYMMLRLPFESEVAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 598



 Score = 80.1 bits (196), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 149



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
           DGP+  +  SP +   L  D+WG    +L+  +        +   KLW+AIL +Q ETGT
Sbjct: 345 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 401

Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
           P+M+YKDACNRK+NQQNL  I+
Sbjct: 402 PFMVYKDACNRKTNQQNLGTIK 423


>gi|375013327|ref|YP_004990315.1| ribonucleoside-diphosphate reductase subunit alpha [Owenweeksia
           hongkongensis DSM 17368]
 gi|359349251|gb|AEV33670.1| ribonucleoside-diphosphate reductase, alpha subunit [Owenweeksia
           hongkongensis DSM 17368]
          Length = 821

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/527 (60%), Positives = 396/527 (75%), Gaps = 27/527 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY LW PD FM+RV+    W+LM 
Sbjct: 292 RKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYALWTPDLFMKRVKEGGDWTLMD 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GEKF++LY KYE EGK  + V AR LW  I +SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVYGEKFEELYTKYEQEGKGRKTVKARDLWGKITESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLASIAL MYI   +  ++  KL DV  
Sbjct: 412 EKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMYIE--EGKFDHQKLYDVTY 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN+IID N+YPV EARNSNMRHRP+G+GVQGLAD FI++RL F  +E++ LNK I
Sbjct: 470 KVTKNLNRIIDRNYYPVAEARNSNMRHRPVGLGVQGLADTFIKLRLSFTSDEAKQLNKDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIYY AL AS + A +DG Y+T+EGSP+S+G  Q++MWG++  DL   WDW AL++++
Sbjct: 530 FETIYYAALCASKDEAIQDGAYETFEGSPISKGEFQFNMWGISEDDLSGNWDWKALRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            + GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 MEKGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLIDLVDL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW +++K+ +I  NGSIQ+I+ IP  LK++YKTVWE+  K ++DM+ADRG FIDQSQSL
Sbjct: 650 GLWSEDLKNDIIRANGSIQNIDIIPDNLKEIYKTVWEMSMKDIIDMSADRGWFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  K++SMHF+ W+ GLKTGMYYLRTK A++AI+FT+ K   A      D++ 
Sbjct: 710 NLFMENANIGKLTSMHFYAWEKGLKTGMYYLRTKAASDAIKFTVQKQSKAEVTPVTDSKQ 769

Query: 568 QEEIQADQ---------EQAMAAM-------------ICRRDNKEDC 592
            E+IQ  +         E+ +A M              C  DN +DC
Sbjct: 770 TEKIQEKESVQKANSLGEKRVAEMAERVNNFSDEEVIACSIDNPDDC 816



 Score =  278 bits (712), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 136/253 (53%), Positives = 180/253 (71%), Gaps = 25/253 (9%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+++MWG++  DL   WDW AL++++ + GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQFNMWGISEDDLSGNWDWKALRKEVMEKGVRNSLLLAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW +++K+ +I  NGSIQ+I+ IP  LK++YKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLIDLVDLGLWSEDLKNDIIRANGSIQNIDIIPDNLKEIYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+ADRG FIDQSQSLN++M   N  K++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSADRGWFIDQSQSLNLFMENANIGKLTSMHFYAWEKGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQ---------EQAMAAM---------- 986
            A++AI+FT+ K   A      D++  E+IQ  +         E+ +A M          
Sbjct: 744 AASDAIKFTVQKQSKAEVTPVTDSKQTEKIQEKESVQKANSLGEKRVAEMAERVNNFSDE 803

Query: 987 ---ICRRDNKEDC 996
               C  DN +DC
Sbjct: 804 EVIACSIDNPDDC 816



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIFDFL+LKKN GKEE RARDLFY LW PD FM+RV+    W+LM 
Sbjct: 292 RKGSFAIYLEPWHADIFDFLDLKKNHGKEEMRARDLFYALWTPDLFMKRVKEGGDWTLMD 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GEKF++LY KYE EG
Sbjct: 352 PNECPGLCDVYGEKFEELYTKYEQEG 377



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++RL F  +E++ LNK IFETIYY AL AS + A +DG Y+T+EGSP+S
Sbjct: 501 LGVQGLADTFIKLRLSFTSDEAKQLNKDIFETIYYAALCASKDEAIQDGAYETFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q++MWG++  DL   WDW AL+   +  G++
Sbjct: 561 KGEFQFNMWGISEDDLSGNWDWKALRKEVMEKGVR 595



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 9/130 (6%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
           G  +  + + V+  +++    GVT ++L D  A +V A +      +A L ++I      
Sbjct: 28  GLSELVDPTTVAMKVIEGIYEGVTTSEL-DSLAAEVSASMTTRHPDYAQLAARIAVSN-- 84

Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
            L+K+     S     E +++L   VN +TG  +P+I+D  YEII KNA  L+S +IYDR
Sbjct: 85  -LHKNTTKSFS-----ETMKDLKEYVNPKTGLHSPLIADDVYEIIEKNAAHLDSTLIYDR 138

Query: 761 DFNYNFFGFK 770
           DF Y++FGFK
Sbjct: 139 DFGYDYFGFK 148



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 28/35 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW  I +SQIETGTPYMLYKDA N KSNQ+NL  I
Sbjct: 388 LWGKITESQIETGTPYMLYKDAANEKSNQKNLGTI 422


>gi|375148686|ref|YP_005011127.1| ribonucleoside-diphosphate reductase subunit alpha [Niastella
           koreensis GR20-10]
 gi|361062732|gb|AEW01724.1| ribonucleoside-diphosphate reductase, alpha subunit [Niastella
           koreensis GR20-10]
          Length = 789

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/491 (62%), Positives = 392/491 (79%), Gaps = 4/491 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DI +FL+L+KN GKEE RARDLFY LWI D FM+RVES+  WSL C
Sbjct: 292 RKGAFAIYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWINDLFMKRVESNGDWSLFC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D++GE+F+ LY +YEAEG+  + + A+ LWFAIL++QIETGTPYMLYKDA N
Sbjct: 352 PNEAPGLGDTFGEEFEALYNRYEAEGRQRKVIKAQDLWFAILEAQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLAS+AL  ++N  +  ++F KL +V  
Sbjct: 412 RKSNQQNLGTIKSSNLCTEILEYTSADEVAVCNLASLALPRFVN--EGKFDFDKLFEVTY 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
              +NLNKIID N+YP+EEA+ SN+RHRPIG+GVQGLAD+FI +RLPF+ + +++LNK I
Sbjct: 470 QAARNLNKIIDNNYYPIEEAKRSNLRHRPIGLGVQGLADVFILLRLPFESDLAKMLNKNI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+ AS ++A   G Y+T+ GSP+S+G  Q+D+W V P++ +DW AL+ ++ KH
Sbjct: 530 FETIYFAAMTASKDMAIEQGAYETFAGSPLSKGQFQFDLWNVEPSNRYDWNALRAEVMKH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVLSGEF +VN HLL+DLV+LGLW
Sbjct: 590 GVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFIIVNKHLLKDLVQLGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+MK+++I  NGSIQ+I  IP ++K LYKTVWEI Q+ ++DMAADRGAFI QSQSLN++
Sbjct: 650 NDSMKNKIIAANGSIQNINEIPAEIKALYKTVWEIKQRHLIDMAADRGAFICQSQSLNLF 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK--TKMANAMASKDARSQ 568
           +     AK++SMHF+ WK+GLKTGMYYLRT+ A+ A+QFT++K  ++    +  K   S 
Sbjct: 710 VDNPTVAKLTSMHFYSWKVGLKTGMYYLRTQAASQAVQFTVEKQGSRQMEPVVPKSGESN 769

Query: 569 EEIQADQEQAM 579
           +EI   Q   M
Sbjct: 770 DEIIEGQVCTM 780



 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/217 (60%), Positives = 172/217 (79%), Gaps = 2/217 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P++ +DW AL+ ++ KHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 564 FQFDLWNVEPSNRYDWNALRAEVMKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEF +VN HLL+DLV+LGLW+D+MK+++I  NGSIQ+I  IP ++K LYKTVWE
Sbjct: 624 VRRVLSGEFIIVNKHLLKDLVQLGLWNDSMKNKIIAANGSIQNINEIPAEIKALYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFI QSQSLN+++     AK++SMHF+ WK+GLKTGMYYLRT+ A+
Sbjct: 684 IKQRHLIDMAADRGAFICQSQSLNLFVDNPTVAKLTSMHFYSWKVGLKTGMYYLRTQAAS 743

Query: 949 NAIQFTIDK--TKMANAMASKDTRSQEEIQADQEQAM 983
            A+QFT++K  ++    +  K   S +EI   Q   M
Sbjct: 744 QAVQFTVEKQGSRQMEPVVPKSGESNDEIIEGQVCTM 780



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DI +FL+L+KN GKEE RARDLFY LWI D FM+RVES+  WSL C
Sbjct: 292 RKGAFAIYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWINDLFMKRVESNGDWSLFC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL D++GE+F+ LY +YEAEG
Sbjct: 352 PNEAPGLGDTFGEEFEALYNRYEAEG 377



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI +RLPF+ + +++LNK IFETIY+ A+ AS ++A   G Y+T+ GSP+S
Sbjct: 501 LGVQGLADVFILLRLPFESDLAKMLNKNIFETIYFAAMTASKDMAIEQGAYETFAGSPLS 560

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G  Q+D+W V P++ +DW AL+   + +G++
Sbjct: 561 KGQFQFDLWNVEPSNRYDWNALRAEVMKHGVR 592



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL++QIETGTPYMLYKDA NRKSNQQNL  I+
Sbjct: 388 LWFAILEAQIETGTPYMLYKDAANRKSNQQNLGTIK 423



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V +GI  YD  GVT ++L + AA    +L       +A+L S+I       L+K+     
Sbjct: 42  VIEGI--YD--GVTTSELDNLAAETAASLTTK-HPDYALLASRIAVSN---LHKNTEKSF 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S       ++ LY+  +  TG + P+++D   EII  NA+ L+S+IIYDRDF +++FGFK
Sbjct: 94  SG-----TMKRLYDYTDSATGRKMPLLADDVMEIIEANAELLDSSIIYDRDFGFDYFGFK 148


>gi|323454028|gb|EGB09899.1| hypothetical protein AURANDRAFT_24558 [Aureococcus anophagefferens]
          Length = 787

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/475 (62%), Positives = 387/475 (81%), Gaps = 7/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 293 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+D  G +F+ LY++YEAEG+  + +PA++LWFAILDSQ+ETGTPYMLYKDACN
Sbjct: 353 PNECPGLADCHGAEFEALYERYEAEGRARKAIPAQQLWFAILDSQVETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD--KTYNFTKLKDV 268
            KSNQ++LGTIK SNLCTEIVEYT+ DE+AVC LASI L ++++ A    T++F KL+  
Sbjct: 413 DKSNQKHLGTIKSSNLCTEIVEYTASDEIAVCTLASINLTVHVDGAGDAATFDFAKLRRT 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A +VTKNLNK++DVN+YPVEEA++SN++HRP+GIGVQG+AD   ++R P++ ++++ +N+
Sbjct: 473 AYVVTKNLNKVVDVNYYPVEEAKSSNLKHRPVGIGVQGMADALAKLRHPYESDDAKRINR 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            +FETIY+GA+EAS ++A   GPY +Y GSP SQG+ Q+D+W V P+D WDW  L+ ++ 
Sbjct: 533 DVFETIYFGAMEASIDLAQELGPYDSYAGSPTSQGLFQFDLWNVKPSDRWDWEGLRARLG 592

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG RNSLL+APMPTASTAQILGNNESFEP+TSN+++RRVL+GEF VVN +LLRDL+ LG
Sbjct: 593 EHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMFTRRVLAGEFAVVNKYLLRDLIALG 652

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++Q+I + GS+Q +  IP  LK LYKT WEI QK VLDM+ADRGAFI QSQSLN
Sbjct: 653 LWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWEIKQKCVLDMSADRGAFICQSQSLN 712

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           +++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A+AI FT+D+     AMA+K
Sbjct: 713 LHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKADAIAFTVDQ-----AMAAK 762



 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 161/199 (80%), Gaps = 5/199 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L+ ++ +HG RNSLL+APMPTASTAQILGNNESFEP+TSN++
Sbjct: 569 FQFDLWNVKPSDRWDWEGLRARLGEHGCRNSLLLAPMPTASTAQILGNNESFEPFTSNMF 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN +LLRDL+ LGLW   +++Q+I + GS+Q +  IP  LK LYKT WE
Sbjct: 629 TRRVLAGEFAVVNKYLLRDLIALGLWTSEIRNQIIADKGSVQGVLAIPDDLKALYKTTWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK VLDM+ADRGAFI QSQSLN+++A+ N  K++SMHF+ WK GLKTGMYYLRT+P A
Sbjct: 689 IKQKCVLDMSADRGAFICQSQSLNLHVADPNPGKLTSMHFYAWKKGLKTGMYYLRTRPKA 748

Query: 949 NAIQFTIDKTKMANAMASK 967
           +AI FT+D+     AMA+K
Sbjct: 749 DAIAFTVDQ-----AMAAK 762



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  +L+LKKN G E  RARDLFYGLWIPD FM+RVE++  WSLMC
Sbjct: 293 RKGSFAIYLEPWHADIETWLDLKKNHGNELERARDLFYGLWIPDLFMKRVEANGFWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+D  G +F+ LY++YEAEG
Sbjct: 353 PNECPGLADCHGAEFEALYERYEAEG 378



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG+AD   ++R P++ ++++ +N+ +FETIY+GA+EAS ++A   GPY +Y GSP S
Sbjct: 506 IGVQGMADALAKLRHPYESDDAKRINRDVFETIYFGAMEASIDLAQELGPYDSYAGSPTS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+ Q+D+W V P+D WDW  L+     +G +
Sbjct: 566 QGLFQFDLWNVKPSDRWDWEGLRARLGEHGCR 597



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQ+ETGTPYMLYKDACN KSNQ++L  I+
Sbjct: 388 QLWFAILDSQVETGTPYMLYKDACNDKSNQKHLGTIK 424



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q ++Q    GVT  +L D  A +  A +      F++L ++I       L+K   N  
Sbjct: 39  ITQKVIQGVYDGVTTHEL-DELAAQTTAYMATQHPDFSVLAARISVSN---LHKSTDNTF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +V+E+L+  ++ +T     +ISD+ Y  + K+ D +N+AI+YDRDF Y++FGFK
Sbjct: 95  S-----DVVEKLHKHMHPKTKKPAALISDETYATVQKHKDAINAAIVYDRDFEYDYFGFK 149


>gi|330805291|ref|XP_003290618.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
 gi|325079257|gb|EGC32866.1| ribonucleotide reductase large subunit [Dictyostelium purpureum]
          Length = 855

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/473 (64%), Positives = 380/473 (80%), Gaps = 9/473 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+F+ELKKN GKEE RARDLFY LW+ D FM RVE +  WSL C
Sbjct: 311 RKGAFAVYLEPWHSDIFEFIELKKNHGKEEMRARDLFYALWVSDLFMERVEQNGDWSLFC 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN    L ++  E+  +LY KYE      R+V  A++LWFAI++SQ+ETGTP++LYKD+C
Sbjct: 371 PNEAPRLDETHSEEHRELYLKYENTPGLARRVIKAQELWFAIMESQVETGTPFILYKDSC 430

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-------NPADKTYNF 262
           N KSNQ+NLGTI  SNLCTEI++YTS DE+AVCNLASIAL  +I       NP +K ++ 
Sbjct: 431 NSKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFIRRKEGSTNPKEKEFDH 490

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL ++ KIVTKNLNKIID N+YPV+EA+ SN+RHRPIGIG+QGLAD+FIQ+R+PFD   
Sbjct: 491 QKLYEITKIVTKNLNKIIDRNYYPVQEAKTSNLRHRPIGIGIQGLADVFIQLRMPFDGTA 550

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
           +  LN +I ETIY+ AL AS E++  +GPY+T++GSP SQGILQYD W VTPT+ W+W  
Sbjct: 551 AAKLNIEIAETIYFAALTASHELSLIEGPYETFKGSPASQGILQYDFWNVTPTNRWNWTD 610

Query: 383 LKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
           LK+KI  K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEF +VN  LL
Sbjct: 611 LKDKIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLL 670

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
            DL+ELG+W   +K+Q+++N GSIQ I  IP  LK+LYKTVWEI Q+T++DMAADRGAFI
Sbjct: 671 EDLMELGIWSPELKNQIVLNRGSIQSIPSIPDDLKELYKTVWEIRQRTLIDMAADRGAFI 730

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           DQSQS N+++AE  +AK++SMHF+ WK GLKTGMYYLRT+PAA+AIQFT+D T
Sbjct: 731 DQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVDPT 783



 Score =  290 bits (743), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/191 (69%), Positives = 161/191 (84%), Gaps = 1/191 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            +YD W VTPT+ W+W  LK+KI  K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNI
Sbjct: 593 LQYDFWNVTPTNRWNWTDLKDKIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNI 652

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           YSRRVL+GEF +VN  LL DL+ELG+W   +K+Q+++N GSIQ I  IP  LK+LYKTVW
Sbjct: 653 YSRRVLAGEFTIVNKQLLEDLMELGIWSPELKNQIVLNRGSIQSIPSIPDDLKELYKTVW 712

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+T++DMAADRGAFIDQSQS N+++AE  +AK++SMHF+ WK GLKTGMYYLRT+PA
Sbjct: 713 EIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPA 772

Query: 948 ANAIQFTIDKT 958
           A+AIQFT+D T
Sbjct: 773 ADAIQFTVDPT 783



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 61/83 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+F+ELKKN GKEE RARDLFY LW+ D FM RVE +  WSL C
Sbjct: 311 RKGAFAVYLEPWHSDIFEFIELKKNHGKEEMRARDLFYALWVSDLFMERVEQNGDWSLFC 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN    L ++  E+  +LY KYE
Sbjct: 371 PNEAPRLDETHSEEHRELYLKYE 393



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD+FIQ+R+PFD   +  LN +I ETIY+ AL AS E++  +GPY+T++GSP S
Sbjct: 530 IGIQGLADVFIQLRMPFDGTAAAKLNIEIAETIYFAALTASHELSLIEGPYETFKGSPAS 589

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QGILQYD W VTPT+ W+W  LK
Sbjct: 590 QGILQYDFWNVTPTNRWNWTDLK 612



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 35/41 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           ++   +LWFAI++SQ+ETGTP++LYKD+CN KSNQ+NL  I
Sbjct: 402 VIKAQELWFAIMESQVETGTPFILYKDSCNSKSNQKNLGTI 442



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 634 CEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQ 693
           CE+  R    +  + + V+Q ++     GV  T+L + AA +  A +      + +L ++
Sbjct: 41  CEMEPRLNE-EIVDPAEVAQKVISGVFPGVKTTELDNLAA-ETAAYMSTRHPDYGVLAAR 98

Query: 694 IETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLN 753
           I             +++++   +E ++  Y  +N +T    P++S + Y+I+ ++A+RL 
Sbjct: 99  ISVSN--------LHKQTSTSLVETVKIQYEYINSKTNLPAPLVSKELYDIVNEHAERLE 150

Query: 754 SAIIYDRDFNYNFFGFK 770
            AI Y RDF+Y+FFGFK
Sbjct: 151 KAIDYQRDFDYDFFGFK 167


>gi|399218487|emb|CCF75374.1| unnamed protein product [Babesia microti strain RI]
          Length = 813

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/496 (63%), Positives = 385/496 (77%), Gaps = 10/496 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+FL+L+KN G EE RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 291 RKGSFAIYLEPWHADIFEFLDLRKNHGSEESRARDLFYALWIPDLFMKRVEANENWTLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL   WGE+F+ LY  YE++G   + VPA+ LWFAIL SQIETGTPYMLYKDACN
Sbjct: 351 PDECRGLDQVWGEEFEKLYTSYESKGMGRKTVPAQTLWFAILQSQIETGTPYMLYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTIK SNLC EIV+YTS +EVAVCNLAS+AL  Y+N     ++F  L    K
Sbjct: 411 YKSNQKNIGTIKSSNLCCEIVQYTSPNEVAVCNLASLALPKYVNTKTLEFDFKLLHSACK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T NLN+IID N+YPV EA  SN RHRPIG+GVQGLAD F+ MR PF+  E+R LN +I
Sbjct: 471 ILTFNLNRIIDENYYPVPEAEYSNKRHRPIGVGVQGLADTFMLMRYPFESQEARELNVRI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+G LE S E+A + GPY+T+EGSP SQG+LQ+D+W     D  ++W  +K+ I K
Sbjct: 531 FETIYHGCLEESVELAKKYGPYETFEGSPASQGLLQFDLWNRKVDDNFYNWTEMKKDIMK 590

Query: 390 HGVRNSLLIAPMPTASTAQIL---------GNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
           +G+RNSLL+APMPTAST+QIL         GN+ESFEPYT NIY RRVLSGEF VVN HL
Sbjct: 591 YGLRNSLLVAPMPTASTSQILVLTYYPNYIGNSESFEPYTCNIYYRRVLSGEFFVVNPHL 650

Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 500
           L DLV+L LW+D MK +LI  NGS+Q+I+ IPQ+LK+LYKTVWEI QK ++DMAADRGAF
Sbjct: 651 LNDLVQLDLWNDQMKQKLIAYNGSLQNIDEIPQELKNLYKTVWEIKQKAIIDMAADRGAF 710

Query: 501 IDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAM 560
           IDQSQSLNIYM +  YAK+SSMHF+GWK GLKTG+YYLRT+PAA+AI+FT+D   +A   
Sbjct: 711 IDQSQSLNIYMEQPTYAKLSSMHFYGWKKGLKTGVYYLRTQPAADAIKFTVDNQIVALTK 770

Query: 561 ASKDARSQEEIQADQE 576
                +SQ  + A  +
Sbjct: 771 NFTLNKSQSNVGAKSD 786



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 168/222 (75%), Gaps = 10/222 (4%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL---------GNNE 818
            ++D+W     D  ++W  +K+ I K+G+RNSLL+APMPTAST+QIL         GN+E
Sbjct: 565 LQFDLWNRKVDDNFYNWTEMKKDIMKYGLRNSLLVAPMPTASTSQILVLTYYPNYIGNSE 624

Query: 819 SFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQK 878
           SFEPYT NIY RRVLSGEF VVN HLL DLV+L LW+D MK +LI  NGS+Q+I+ IPQ+
Sbjct: 625 SFEPYTCNIYYRRVLSGEFFVVNPHLLNDLVQLDLWNDQMKQKLIAYNGSLQNIDEIPQE 684

Query: 879 LKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           LK+LYKTVWEI QK ++DMAADRGAFIDQSQSLNIYM +  YAK+SSMHF+GWK GLKTG
Sbjct: 685 LKNLYKTVWEIKQKAIIDMAADRGAFIDQSQSLNIYMEQPTYAKLSSMHFYGWKKGLKTG 744

Query: 939 MYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQE 980
           +YYLRT+PAA+AI+FT+D   +A        +SQ  + A  +
Sbjct: 745 VYYLRTQPAADAIKFTVDNQIVALTKNFTLNKSQSNVGAKSD 786



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 71/87 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+FL+L+KN G EE RARDLFY LWIPD FM+RVE++  W+LMC
Sbjct: 291 RKGSFAIYLEPWHADIFEFLDLRKNHGSEESRARDLFYALWIPDLFMKRVEANENWTLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ CRGL   WGE+F+ LY  YE++G+
Sbjct: 351 PDECRGLDQVWGEEFEKLYTSYESKGM 377



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F+ MR PF+  E+R LN +IFETIY+G LE S E+A + GPY+T+EGSP S
Sbjct: 502 VGVQGLADTFMLMRYPFESQEARELNVRIFETIYHGCLEESVELAKKYGPYETFEGSPAS 561

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           QG+LQ+D+W     D  ++W  +K   + YGL+
Sbjct: 562 QGLLQFDLWNRKVDDNFYNWTEMKKDIMKYGLR 594



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL SQIETGTPYMLYKDACN KSNQ+N+  I+
Sbjct: 387 LWFAILQSQIETGTPYMLYKDACNYKSNQKNIGTIK 422



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 37/62 (59%)

Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG 768
            K+   N+E +  L        G  +P+++DK Y+ I+++ DR+N  I YD DF Y++FG
Sbjct: 86  HKNTFDNIESVANLLYNFKDSNGNHSPLLNDKVYKFIIQHKDRINKEIDYDMDFQYDYFG 145

Query: 769 FK 770
           FK
Sbjct: 146 FK 147


>gi|402495789|ref|ZP_10842509.1| ribonucleoside-diphosphate reductase large chain [Aquimarina
           agarilytica ZC1]
          Length = 816

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/464 (65%), Positives = 379/464 (81%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFLEL+KN GKEE RARDLFY +WI D FM+RVE+D  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADENWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D   E+F+ LY +YEAEGK  R V AR++W  +L+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPGLYDVHSEEFESLYTRYEAEGKGRRTVKAREVWEKVLESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DE+AVCNLASIAL M++      ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASIALPMFVKGGK--FDHDELFKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV++A NSNMRHRP+G+G+QGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKQAENSNMRHRPVGLGIQGLADTFIMLRMPFTSDEAKKLNEEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +G Y++YEGSP+SQG  Q+++WG+   +L   WDW AL+ KI
Sbjct: 530 FETMYFAAVTASNELAEVEGTYESYEGSPISQGEFQFNLWGIKDEELSGRWDWKALRAKI 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVEL
Sbjct: 590 QKSGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+D++KD ++  NGSIQ+I+GIPQ LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNDDLKDAIMRANGSIQNIDGIPQDLKELYKTVWEMSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N++M   N AK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+
Sbjct: 710 NLFMEGANNAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTL 753



 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/190 (67%), Positives = 159/190 (83%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW AL+ KI K GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQFNLWGIKDEELSGRWDWKALRAKIQKSGVRNSLLMAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVELGLW+D++KD ++  NGSIQ+I+GIPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLHDLVELGLWNDDLKDAIMRANGSIQNIDGIPQDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   N AK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRHRGYFIDQSQSLNLFMEGANNAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTI 955
            A +AI+FT+
Sbjct: 744 SAVDAIKFTL 753



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFLEL+KN GKEE RARDLFY +WI D FM+RVE+D  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADENWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D   E+F+ LY +YEAEG
Sbjct: 352 PHECPGLYDVHSEEFESLYTRYEAEG 377



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 66/86 (76%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +G Y++YEGSP+S
Sbjct: 501 LGIQGLADTFIMLRMPFTSDEAKKLNEEIFETMYFAAVTASNELAEVEGTYESYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WG+   +L   WDW AL+
Sbjct: 561 QGEFQFNLWGIKDEELSGRWDWKALR 586



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++LY  VN  TG    +I+D  Y+++M+N ++L+S IIY+RDF+Y++FGFK
Sbjct: 95  EVVKDLYEYVNPRTGKDAALIADDVYKVVMENKEKLDSTIIYNRDFSYDYFGFK 148



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   ++W  +L+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 383 VKAREVWEKVLESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|332876815|ref|ZP_08444572.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685241|gb|EGJ58081.1| ribonucleoside-diphosphate reductase, alpha subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 777

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/504 (61%), Positives = 391/504 (77%), Gaps = 22/504 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARDLFPALWIPDLFMQRVEADQMWSLFD 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL + +GEKF++LY  YE EGKF +Q+ AR+LW AIL++QIETGTPYM YKDA N
Sbjct: 353 PNEAQGLYEVYGEKFNELYTTYENEGKFRKQIKARELWTAILEAQIETGTPYMCYKDAVN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+GTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL  Y++     ++F KL +V K
Sbjct: 413 EKSNQKNIGTIRSSNLCTEIMEYTNADEVAVCNLASLALPRYVSSGG--FDFQKLYEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNKIID N+YP+ E + SN RHRPIG+GVQGLAD+F+ +RLPF+  E+R LNK I
Sbjct: 471 IVTRNLNKIIDGNYYPIPETKTSNDRHRPIGLGVQGLADVFLLLRLPFESPEARRLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ ++EAS ++A   G Y ++ GSP+S+G  Q+D+W V P+D WDW  L++++  H
Sbjct: 531 FETIYFASMEASMDLAKEQGAYSSFAGSPLSEGKFQFDLWQVVPSDRWDWEKLRQEVMTH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN  LL+DL+ELGLW
Sbjct: 591 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYNRRVLSGEFVVVNKFLLKDLIELGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +  MK++LI  NGS+Q+I  IP +LK+LYKTVWEI QKT++DMAA+RGAFI QSQSLN++
Sbjct: 651 NPTMKNKLIAENGSVQNIPEIPTELKELYKTVWEIKQKTIIDMAAERGAFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           MAE N AK++SMHFH WK GLKTGMYYLRTK A +AI+FT+D                 +
Sbjct: 711 MAEPNLAKLTSMHFHAWKSGLKTGMYYLRTKAAVDAIKFTVDT----------------Q 754

Query: 571 IQADQEQAMAAMICRRDNKEDCIG 594
           +   Q Q    + C  DN E+C+ 
Sbjct: 755 LLLGQSQ----VACSLDNPEECLA 774



 Score =  295 bits (755), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 140/229 (61%), Positives = 174/229 (75%), Gaps = 20/229 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW  L++++  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 565 FQFDLWQVVPSDRWDWEKLRQEVMTHGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN  LL+DL+ELGLW+  MK++LI  NGS+Q+I  IP +LK+LYKTVWE
Sbjct: 625 NRRVLSGEFVVVNKFLLKDLIELGLWNPTMKNKLIAENGSVQNIPEIPTELKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAA+RGAFI QSQSLN++MAE N AK++SMHFH WK GLKTGMYYLRTK A 
Sbjct: 685 IKQKTIIDMAAERGAFICQSQSLNLFMAEPNLAKLTSMHFHAWKSGLKTGMYYLRTKAAV 744

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +AI+FT+D                 ++   Q Q    + C  DN E+CL
Sbjct: 745 DAIKFTVDT----------------QLLLGQSQ----VACSLDNPEECL 773



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE+D  WSL  
Sbjct: 293 RKGAIAVYIEPWHLDIFDFIDIRKNHGKEEMRARDLFPALWIPDLFMQRVEADQMWSLFD 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  +GL + +GEKF++LY  YE EG
Sbjct: 353 PNEAQGLYEVYGEKFNELYTTYENEG 378



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 85/138 (61%), Gaps = 3/138 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +RLPF+  E+R LNK IFETIY+ ++EAS ++A   G Y ++ GSP+S
Sbjct: 502 LGVQGLADVFLLLRLPFESPEARRLNKDIFETIYFASMEASMDLAKEQGAYSSFAGSPLS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNR--K 710
           +G  Q+D+W V P+D WDW  L+   + +G++    +L       T  +L  + C     
Sbjct: 562 EGKFQFDLWQVVPSDRWDWEKLRQEVMTHGVRNSL-LLAPMPTASTSQILGNNECFEPYT 620

Query: 711 SNQQNLEVIEELYNMVNK 728
           SN  N  V+   + +VNK
Sbjct: 621 SNIYNRRVLSGEFVVVNK 638



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           F++L ++I       L+K+     S    L     LY   +  T T  P+IS++ Y+II 
Sbjct: 74  FSVLAARIAVSN---LHKNTLKSFSKTAQL-----LYEYTDPITQTHAPLISEEIYKIIR 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           KNAD L+S++IYDRD+N+++FGFK
Sbjct: 126 KNADELDSSVIYDRDYNFDYFGFK 149



 Score = 57.0 bits (136), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW AIL++QIETGTPYM YKDA N KSNQ+N+  I
Sbjct: 388 ELWTAILEAQIETGTPYMCYKDAVNEKSNQKNIGTI 423


>gi|146298284|ref|YP_001192875.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           johnsoniae UW101]
 gi|146152702|gb|ABQ03556.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           johnsoniae UW101]
          Length = 797

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/505 (60%), Positives = 400/505 (79%), Gaps = 7/505 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIFDFL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D+ W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY  YE  GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGDEFEALYTDYEFRGKGRKTIRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN +NLGTI+ SNLCTEI+E+TSKDE+AVCNLASI+L M+I+  +  ++   L +V K
Sbjct: 412 RKSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFIDNGE--FDHQALYNVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRP+G+GVQGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+EGSP+SQG  QY+MWG+   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSTFEGSPMSQGEFQYNMWGMKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 VEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVKL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++ +NGS+Q+I+ IPQ LKDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M + NY+K++SMHF+ W+ GLKTGMYYLRTK A +AI+FT++  K      S   + 
Sbjct: 710 NLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNNDKKEETAPSL-VQE 768

Query: 568 QEEIQADQEQAMAAMICRRDNKEDC 592
            E I  +  +AM  +  +  + EDC
Sbjct: 769 TEAISVEDYKAM-LLKAQAADPEDC 792



 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 180/231 (77%), Gaps = 5/231 (2%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWG+   +L   WDWA+L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGMKDEELSGRWDWASLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW++++K +++ +NGS+Q+I+ IPQ LKDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVKLGLWNEDLKQEIMRHNGSVQNIDKIPQDLKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M + NY+K++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A +AI+FT++  K      S   +  E I  +  +AM  +  +  + EDC
Sbjct: 744 AAVDAIKFTLNNDKKEETAPSL-VQETEAISVEDYKAM-LLKAQAADPEDC 792



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIFDFL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D+ W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDSTWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++F+ LY  YE  G
Sbjct: 352 PNECPGLYDVYGDEFEALYTDYEFRG 377



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY+MWG+   +L   WDWA+L+   + +G++
Sbjct: 561 QGEFQYNMWGMKDEELSGRWDWASLRKEVVEHGVR 595



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++YN VN   G   P+I+D  Y++I +NA  L+S IIY RDFNY++FGFK
Sbjct: 95  ETMKDMYNYVNPRNGQDAPLIADDVYKVIQENAAFLDSHIIYTRDFNYDYFGFK 148



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSN +NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNHKNLGTI 422


>gi|443242948|ref|YP_007376173.1| ribonucleoside-diphosphate reductase [Nonlabens dokdonensis DSW-6]
 gi|442800347|gb|AGC76152.1| ribonucleoside-diphosphate reductase [Nonlabens dokdonensis DSW-6]
          Length = 868

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/475 (63%), Positives = 381/475 (80%), Gaps = 5/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RVE++  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVETNDTWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  L +  G++F+ LY KYE EGK  + +PAR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPDLYNVHGDEFEALYTKYEQEGKGRKTIPARELWDKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLASIAL M++   D  ++   L  V K
Sbjct: 412 NKSNQKNLGTIRSSNLCTEIIEYTAPDEVAVCNLASIALPMFVK--DGAFDHKALYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRP+G+G+QGLAD FI +RLPF C+E++ LN  I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGIQGLADAFIMLRLPFTCDEAKQLNSDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A EAS E+A  +G Y T+ GSP+SQG  QY+MW +    L   W+WA L+ K+
Sbjct: 530 FETLYFAACEASMEMAQEEGAYSTFAGSPMSQGQFQYNMWNINDDQLSGRWNWADLRTKV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RR LSGEF VVN HLL+DLV+L
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVDL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLWDD++K+ ++ NNGSIQ IEGIP+ +K+LYKTVWE+  K ++DM+ +RG FIDQSQSL
Sbjct: 650 GLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRERGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           N++M  +  +K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+ K K A  +A+
Sbjct: 710 NLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTKEKKAVPVAT 764



 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/201 (63%), Positives = 165/201 (82%), Gaps = 3/201 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MW +    L   W+WA L+ K+ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWNINDDQLSGRWNWADLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RR LSGEF VVN HLL+DLV+LGLWDD++K+ ++ NNGSIQ IEGIP+ +K+LYKT
Sbjct: 624 NIYTRRTLSGEFIVVNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+ +RG FIDQSQSLN++M  +  +K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELKMKDIIDMSRERGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMAS 966
            A +AI+FT+ K K A  +A+
Sbjct: 744 AAVDAIKFTVTKEKKAVPVAT 764



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WI D FM+RVE++  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWISDLFMKRVETNDTWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L +  G++F+ LY KYE EG
Sbjct: 352 PHECPDLYNVHGDEFEALYTKYEQEG 377



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +RLPF C+E++ LN  IFET+Y+ A EAS E+A  +G Y T+ GSP+S
Sbjct: 501 LGIQGLADAFIMLRLPFTCDEAKQLNSDIFETLYFAACEASMEMAQEEGAYSTFAGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY+MW +    L   W+WA L+   + +G++
Sbjct: 561 QGQFQYNMWNINDDQLSGRWNWADLRTKVMEHGVR 595



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+ +LY  VN  T  + PMISD+ Y++I  NADRLNSAIIY+RDF Y++FGFK
Sbjct: 95  DVVTDLYEYVNPRTSKKAPMISDEVYKVIQDNADRLNSAIIYNRDFGYDYFGFK 148



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA N KSNQ+NL  I
Sbjct: 387 ELWDKILESQIETGTPYMLYKDAANNKSNQKNLGTI 422


>gi|356927904|gb|AET42694.1| ribonucleoside diphosphate reductase [Emiliania huxleyi virus 202]
          Length = 491

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/471 (63%), Positives = 380/471 (80%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL++NTGKEE RARDLFY LWI D FM+RVE+   WSL C
Sbjct: 20  RKGAFAMYLEPHHADIFEFLELRRNTGKEELRARDLFYALWISDHFMQRVEAGKDWSLFC 79

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D WG+ +  LY+KYE++GK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 80  PHECPGLADVWGDDYVKLYEKYESDGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 139

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL +++   D +++  +L DV  
Sbjct: 140 RKSNQQHLGTIQQSNLCTEIIEYTASDETAVCNLASIALPIFVK--DGSFDHQELYDVTY 197

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  E+R+LNK+I
Sbjct: 198 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSIEARVLNKEI 257

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+S+G+ Q+DMW VTP+D WDW  L+  I +H
Sbjct: 258 FETMYFAAMTASCDLAKTKGKYPTYEGSPLSKGVFQFDMWNVTPSDRWDWDTLRGNIKEH 317

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLLI+PMPTASTAQILGNNE  EP+TSN+YSRRVLSGEF VVN HL++DL ELGLW
Sbjct: 318 GARNSLLISPMPTASTAQILGNNECMEPFTSNLYSRRVLSGEFAVVNRHLVKDLSELGLW 377

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++ MAADRGAFI QSQS N++
Sbjct: 378 NDKMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIHMAADRGAFICQSQSFNVF 437

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           M     AK++SMHF+GWK GLKTG YY+R++PAA+AI+FT+D +  +   A
Sbjct: 438 MTAPTSAKLTSMHFYGWKSGLKTGSYYIRSRPAADAIKFTVDTSDTSECEA 488



 Score =  280 bits (715), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 158/197 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW VTP+D WDW  L+  I +HG RNSLLI+PMPTASTAQILGNNE  EP+TSN+Y
Sbjct: 292 FQFDMWNVTPSDRWDWDTLRGNIKEHGARNSLLISPMPTASTAQILGNNECMEPFTSNLY 351

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN HL++DL ELGLW+D MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 352 SRRVLSGEFAVVNRHLVKDLSELGLWNDKMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 411

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  +T++ MAADRGAFI QSQS N++M     AK++SMHF+GWK GLKTG YY+R++PAA
Sbjct: 412 ISMRTLIHMAADRGAFICQSQSFNVFMTAPTSAKLTSMHFYGWKSGLKTGSYYIRSRPAA 471

Query: 949 NAIQFTIDKTKMANAMA 965
           +AI+FT+D +  +   A
Sbjct: 472 DAIKFTVDTSDTSECEA 488



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL++NTGKEE RARDLFY LWI D FM+RVE+   WSL C
Sbjct: 20  RKGAFAMYLEPHHADIFEFLELRRNTGKEELRARDLFYALWISDHFMQRVEAGKDWSLFC 79

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D WG+ +  LY+KYE++G
Sbjct: 80  PHECPGLADVWGDDYVKLYEKYESDG 105



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 67/83 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  E+R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 229 LGVQGLADVFMMLKMAFDSIEARVLNKEIFETMYFAAMTASCDLAKTKGKYPTYEGSPLS 288

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G+ Q+DMW VTP+D WDW  L+
Sbjct: 289 KGVFQFDMWNVTPSDRWDWDTLR 311



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 36/38 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+L  I++
Sbjct: 115 KLWFAIMDSQIETGTPYMLYKDSCNRKSNQQHLGTIQQ 152


>gi|91080435|ref|XP_968743.1| PREDICTED: similar to AGAP010198-PA [Tribolium castaneum]
 gi|270005755|gb|EFA02203.1| hypothetical protein TcasGA2_TC007860 [Tribolium castaneum]
          Length = 798

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/502 (60%), Positives = 387/502 (77%), Gaps = 5/502 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           +P   AI+LEPWH DI DFL LK+ TGK+E+RARDL Y LW+PD FM RV++D +WSLMC
Sbjct: 297 QPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALWVPDLFMHRVKNDEKWSLMC 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GL + WG++F+ LY+KYE+EG+F++Q+PAR +W AI  SQ+ETG+PY+LYKDACN
Sbjct: 357 PHQAQGLPNCWGQEFEKLYEKYESEGRFVKQIPARDVWRAICVSQMETGSPYILYKDACN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIK S+L TE ++Y+S DE+A C  AS+ALNM++NP    Y+F KLK V K
Sbjct: 417 KKSNQQNLGTIKSSSLSTESIQYSSSDEIAACITASVALNMFVNPERNGYDFEKLKQVVK 476

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +TKNLNK IDV+ YP  EAR SN+RHRPIGIGVQGLAD FI +R+PF+  E+R LN QI
Sbjct: 477 TLTKNLNKAIDVSAYPSPEARTSNLRHRPIGIGVQGLADTFILLRMPFESPEARSLNVQI 536

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+YY ALEAS EIA RDGPY TY+GSP+SQG LQYDMWGV PT LWDW ALK++IAKH
Sbjct: 537 FETLYYAALEASSEIAERDGPYSTYDGSPLSQGRLQYDMWGVEPTKLWDWVALKQRIAKH 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+A +PT STAQILGNN+S EPY SN+  RRV S EF+ VN HLL+DL E GLW
Sbjct: 597 GVRNSLLVALIPTISTAQILGNNQSIEPYLSNVQVRRVNSSEFRDVNQHLLKDLTERGLW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             ++K ++I  NGS+Q+I GIP  LK +YKTVWEIPQK V++MAADRGAFIDQSQ++N++
Sbjct: 657 TSDLKQEVIERNGSVQNIAGIPDDLKCIYKTVWEIPQKIVIEMAADRGAFIDQSQAMNVH 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +   +YA MSSMHF+GW+ GLKTGMY LRT P    +    +  +   ++  ++    ++
Sbjct: 717 IGAPSYAVMSSMHFYGWQKGLKTGMYNLRTNP----VSVVQNGNRSKVSVVQENGEKSDD 772

Query: 571 IQADQEQAMAAMICRRDNKEDC 592
           ++   E+  AA+ C   N   C
Sbjct: 773 MKKSPEED-AALQCSLQNPGAC 793



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 132/251 (52%), Positives = 168/251 (66%), Gaps = 13/251 (5%)

Query: 754 SAIIYDRDFNYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 805
           S+ I +RD  Y+ +          +YDMWGV PT LWDW ALK++IAKHGVRNSLL+A +
Sbjct: 548 SSEIAERDGPYSTYDGSPLSQGRLQYDMWGVEPTKLWDWVALKQRIAKHGVRNSLLVALI 607

Query: 806 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVN 865
           PT STAQILGNN+S EPY SN+  RRV S EF+ VN HLL+DL E GLW  ++K ++I  
Sbjct: 608 PTISTAQILGNNQSIEPYLSNVQVRRVNSSEFRDVNQHLLKDLTERGLWTSDLKQEVIER 667

Query: 866 NGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSS 925
           NGS+Q+I GIP  LK +YKTVWEIPQK V++MAADRGAFIDQSQ++N+++   +YA MSS
Sbjct: 668 NGSVQNIAGIPDDLKCIYKTVWEIPQKIVIEMAADRGAFIDQSQAMNVHIGAPSYAVMSS 727

Query: 926 MHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985
           MHF+GW+ GLKTGMY LRT P +        K  +      K    ++  + D     AA
Sbjct: 728 MHFYGWQKGLKTGMYNLRTNPVSVVQNGNRSKVSVVQENGEKSDDMKKSPEED-----AA 782

Query: 986 MICRRDNKEDC 996
           + C   N   C
Sbjct: 783 LQCSLQNPGAC 793



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 104/177 (58%), Gaps = 15/177 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +R+PF+  E+R LN QIFET+YY ALEAS EIA RDGPY TY+GSP+S
Sbjct: 508 IGVQGLADTFILLRMPFESPEARSLNVQIFETLYYAALEASSEIAERDGPYSTYDGSPLS 567

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK------LWFAILDSQI----ETGTPYML 702
           QG LQYDMWGV PT LWDW ALK     +G++      L   I  +QI    ++  PY+ 
Sbjct: 568 QGRLQYDMWGVEPTKLWDWVALKQRIAKHGVRNSLLVALIPTISTAQILGNNQSIEPYL- 626

Query: 703 YKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
                N +  + N     ++   + K+   R    SD   E+I +N    N A I D
Sbjct: 627 ----SNVQVRRVNSSEFRDVNQHLLKDLTERGLWTSDLKQEVIERNGSVQNIAGIPD 679



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           +P   AI+LEPWH DI DFL LK+ TGK+E+RARDL Y LW+PD FM RV++D +WSLMC
Sbjct: 297 QPSNQAIFLEPWHADILDFLNLKRTTGKDEYRARDLQYALWVPDLFMHRVKNDEKWSLMC 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+  +GL + WG++F+ LY+KYE+EG
Sbjct: 357 PHQAQGLPNCWGQEFEKLYEKYESEG 382



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 36/54 (66%), Positives = 47/54 (87%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +VI +LY+ V+ +TG +TP+ISD+HYEIIMKNA RLNS I+YDRDF+YN+F FK
Sbjct: 101 DVISDLYHAVDPQTGEKTPLISDQHYEIIMKNASRLNSCIVYDRDFSYNYFAFK 154



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI  SQ+ETG+PY+LYKDACN+KSNQQNL  I+
Sbjct: 393 VWRAICVSQMETGSPYILYKDACNKKSNQQNLGTIK 428


>gi|149279600|ref|ZP_01885729.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
 gi|149229636|gb|EDM35026.1| ribonucleoside diphosphate reductase, alpha subunit [Pedobacter sp.
           BAL39]
          Length = 792

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/508 (61%), Positives = 394/508 (77%), Gaps = 9/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LW+ D FM+RVE++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKRVEANEDWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F+ LY++YE EG+  + V A++LWFAILDSQIETGTPY+LYKDA N
Sbjct: 353 PHEAPGLADCFGDEFEALYERYEKEGRARKTVKAQELWFAILDSQIETGTPYLLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EYTSKDEVAVCNLAS+AL  ++   +  ++  KL DV  
Sbjct: 413 SKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFV--INGEFDHQKLYDVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLNKIID N+YPVEEA+NSNMRHRP+G+GVQGLAD FI MRLPF+ + +RLLNK+I
Sbjct: 471 QATLNLNKIIDYNYYPVEEAKNSNMRHRPVGLGVQGLADAFILMRLPFESDGARLLNKEI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+ AS ++A  +GPYQT++GSP+SQG  Q+D+W VTP +  WDW +L+EK+ K
Sbjct: 531 FETIYFAAMTASHDLAVVNGPYQTFKGSPLSQGKFQFDLWNVTPDSGRWDWESLREKVVK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            GV NSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV LGL
Sbjct: 591 DGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVALGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   MKD++I+ NGSIQDI  IP  +K+LYKTVWEI  ++++DMAADRGA+I QSQSLN+
Sbjct: 651 WTPAMKDRIILANGSIQDIAEIPDYIKELYKTVWEIKMRSIIDMAADRGAYICQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++   N +K++SMHF+ WK GLKTGMYYLRT+ A+ A++FT++     N     +    +
Sbjct: 711 FINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTVENQAGKNM----EPVIPD 766

Query: 570 EIQADQEQAMAAMICRRDNKEDCIGVQG 597
            I    E+     +C  +  E CI   G
Sbjct: 767 HIDQPVEEITDGPVCSME--EGCISCSG 792



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 158/189 (83%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W VTP +  WDW +L+EK+ K GV NSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDLWNVTPDSGRWDWESLREKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV LGLW   MKD++I+ NGSIQDI  IP  +K+LYKTVW
Sbjct: 625 YTRRVLSGEFIVVNKHLLKDLVALGLWTPAMKDRIILANGSIQDIAEIPDYIKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  ++++DMAADRGA+I QSQSLN+++   N +K++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 685 EIKMRSIIDMAADRGAYICQSQSLNLFINAPNTSKLTSMHFYAWKKGLKTGMYYLRTQAA 744

Query: 948 ANAIQFTID 956
           + A++FT++
Sbjct: 745 SQAVKFTVE 753



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+F FL+L+KN GKEE RARDLFY LW+ D FM+RVE++  WSL C
Sbjct: 293 RKGAFAIYLEPWHADVFSFLDLRKNHGKEELRARDLFYALWVCDLFMKRVEANEDWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F+ LY++YE EG
Sbjct: 353 PHEAPGLADCFGDEFEALYERYEKEG 378



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 106/178 (59%), Gaps = 16/178 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MRLPF+ + +RLLNK+IFETIY+ A+ AS ++A  +GPYQT++GSP+S
Sbjct: 502 LGVQGLADAFILMRLPFESDGARLLNKEIFETIYFAAMTASHDLAVVNGPYQTFKGSPLS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR- 709
           QG  Q+D+W VTP +  WDW +L+   +  G  ++ ++L + + T  T  +L  + C   
Sbjct: 562 QGKFQFDLWNVTPDSGRWDWESLREKVVKDG--VYNSLLVAPMPTASTSQILGNNECFEP 619

Query: 710 -KSNQQNLEVIEELYNMVNKE-------TGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
             SN     V+   + +VNK         G  TP + D+   II+ N    + A I D
Sbjct: 620 YTSNIYTRRVLSGEFIVVNKHLLKDLVALGLWTPAMKDR---IILANGSIQDIAEIPD 674



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LWFAILDSQIETGTPY+LYKDA N KSNQQNL  I+
Sbjct: 384 VKAQELWFAILDSQIETGTPYLLYKDAANSKSNQQNLGTIK 424



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA    +L       +A+L S+I       L+K+     S     + +E 
Sbjct: 50  GVTTSELDNLAAETAASLTTKHPD-YALLASRIAVSN---LHKNTTKSFS-----KTMEM 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  V+ +T     +I+D  +E+I +NAD L+S IIYDRDF +++FGFK
Sbjct: 101 LYKYVDSKTDKSASLIADDVWEVIQENADILDSTIIYDRDFGFDYFGFK 149


>gi|373954258|ref|ZP_09614218.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
 gi|373890858|gb|EHQ26755.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Mucilaginibacter paludis DSM 18603]
          Length = 792

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/463 (65%), Positives = 381/463 (82%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWI D FM+RVE D QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQRVEEDGQWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + WG++F+ LY KYEAEG+  + + A++LWFAILD+Q+ETGTPY+LYKDA N
Sbjct: 353 PHEAPGLHECWGKEFEALYTKYEAEGRARKTIRAQELWFAILDAQVETGTPYLLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLAS+AL  YI      ++  KL +V  
Sbjct: 413 SKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYITAG--VFDHQKLYEVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLNKIID N+YPV EA NSN RHRPIG+GVQGLAD FI++RLPF+ +E++ LNK+I
Sbjct: 471 QVTLNLNKIIDHNYYPVVEASNSNFRHRPIGLGVQGLADTFIRLRLPFESDEAKKLNKEI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+ AS ++A +DGPY+T++GSP+SQG  Q+D+W VTP +  W+W  L+  +  
Sbjct: 531 FETIYFAAMTASKDLAIQDGPYETFKGSPLSQGKFQFDLWNVTPDSGRWNWEDLRSDVMN 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN +LL DLVELGL
Sbjct: 591 HGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKYLLHDLVELGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+++MK+Q+I  NGS+QDI  IP ++K+LYKTVWEI  +T++DMAADRGA++ QSQSLN+
Sbjct: 651 WNNDMKNQIISANGSVQDIPEIPAEIKELYKTVWEIKMRTIIDMAADRGAYVCQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +++  N +K++SMHF+ WK GLKTGMYYLRT+ A+ A++FTI+
Sbjct: 711 FISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAASQAVKFTIE 753



 Score =  272 bits (696), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 160/189 (84%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W VTP +  W+W  L+  +  HGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDLWNVTPDSGRWNWEDLRSDVMNHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN +LL DLVELGLW+++MK+Q+I  NGS+QDI  IP ++K+LYKTVW
Sbjct: 625 YTRRVLSGEFVVVNKYLLHDLVELGLWNNDMKNQIISANGSVQDIPEIPAEIKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  +T++DMAADRGA++ QSQSLN++++  N +K++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 685 EIKMRTIIDMAADRGAYVCQSQSLNLFISSPNASKLTSMHFYAWKKGLKTGMYYLRTQAA 744

Query: 948 ANAIQFTID 956
           + A++FTI+
Sbjct: 745 SQAVKFTIE 753



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWI D FM+RVE D QWSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEMRARDLFYALWICDLFMQRVEEDGQWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL + WG++F+ LY KYEAEG
Sbjct: 353 PHEAPGLHECWGKEFEALYTKYEAEG 378



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 74/93 (79%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++RLPF+ +E++ LNK+IFETIY+ A+ AS ++A +DGPY+T++GSP+S
Sbjct: 502 LGVQGLADTFIRLRLPFESDEAKKLNKEIFETIYFAAMTASKDLAIQDGPYETFKGSPLS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QG  Q+D+W VTP +  W+W  L+   + +G++
Sbjct: 562 QGKFQFDLWNVTPDSGRWNWEDLRSDVMNHGVR 594



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILD+Q+ETGTPY+LYKDA N KSNQQNL  I+
Sbjct: 388 ELWFAILDAQVETGTPYLLYKDAANSKSNQQNLGTIK 424



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           VS+ +++    GVT ++L + AA    +L       +A+L S+I       L+K+     
Sbjct: 39  VSKKVVEGLYDGVTTSELDNLAAETAASLTTKHPD-YALLASRIAVSN---LHKNTIKSF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     E +  LY   +K+TG    +I+D  ++ I  NA+ L+S IIYDRDF +++FGFK
Sbjct: 95  S-----ETMRNLYLYTDKKTGKNASLIADDVWQAIEANAELLDSTIIYDRDFGFDYFGFK 149


>gi|378756094|gb|EHY66119.1| ribonucleoside-diphosphate reductase [Nematocida sp. 1 ERTm2]
          Length = 785

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/464 (66%), Positives = 375/464 (80%), Gaps = 3/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+  +Y+EPWH DIFDFL+LKKNTGKEE RAR+LF GLWIPD FMRRVE D  W L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLKKNTGKEEMRARNLFLGLWIPDLFMRRVEEDGDWCLFC 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN  +GL + +G +F++LY  YE   +  ++V  ARKLW AIL+++IETG PY+LYKD+C
Sbjct: 356 PNLAKGLHEKYGSEFEELYTTYEKTPEIEKKVISARKLWKAILEAEIETGVPYILYKDSC 415

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           NRKSNQ+NLG IK SNLC EIVEYT   E+AVCNLAS+AL  YI   +K +NF KLK+VA
Sbjct: 416 NRKSNQKNLGVIKGSNLCAEIVEYTDPSEIAVCNLASLALPTYIE--NKQFNFNKLKEVA 473

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           KIV KNLNKIIDVN YP+EEA+ SN+++RPIGIGVQGLAD++I +  PF+  E+  LNK 
Sbjct: 474 KIVAKNLNKIIDVNKYPLEEAKYSNLKNRPIGIGVQGLADVYILLGYPFESKEAAELNKA 533

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAK 389
           IFETIYYGALEASCE+A   GPY++Y GSPVSQGILQYDMW V P+D WDWA LK++IA 
Sbjct: 534 IFETIYYGALEASCELAEIHGPYKSYAGSPVSQGILQYDMWDVQPSDRWDWAGLKKRIAA 593

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+A MPTAST+QILG NE FE +TSNIY+RR LSGEFQ+VN HL++DL +LGL
Sbjct: 594 HGVRNSLLVALMPTASTSQILGFNECFEGFTSNIYTRRTLSGEFQIVNMHLVKDLADLGL 653

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   MK+ +I + GSIQ+I  IP  +K LYKTVWEI QK V+D AADRGA++DQSQS+NI
Sbjct: 654 WGPEMKNIIIEHEGSIQNIPSIPDNIKLLYKTVWEIKQKAVIDQAADRGAYVDQSQSMNI 713

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +++   +A+++SMHF+GWK GLKTG YYLRTKP   AI+FT+DK
Sbjct: 714 HISAPTFAQLTSMHFYGWKKGLKTGTYYLRTKPTQAAIKFTVDK 757



 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 123/189 (65%), Positives = 154/189 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V P+D WDWA LK++IA HGVRNSLL+A MPTAST+QILG NE FE +TSNIY
Sbjct: 569 LQYDMWDVQPSDRWDWAGLKKRIAAHGVRNSLLVALMPTASTSQILGFNECFEGFTSNIY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR LSGEFQ+VN HL++DL +LGLW   MK+ +I + GSIQ+I  IP  +K LYKTVWE
Sbjct: 629 TRRTLSGEFQIVNMHLVKDLADLGLWGPEMKNIIIEHEGSIQNIPSIPDNIKLLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D AADRGA++DQSQS+NI+++   +A+++SMHF+GWK GLKTG YYLRTKP  
Sbjct: 689 IKQKAVIDQAADRGAYVDQSQSMNIHISAPTFAQLTSMHFYGWKKGLKTGTYYLRTKPTQ 748

Query: 949 NAIQFTIDK 957
            AI+FT+DK
Sbjct: 749 AAIKFTVDK 757



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 65/83 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+  +Y+EPWH DIFDFL+LKKNTGKEE RAR+LF GLWIPD FMRRVE D  W L C
Sbjct: 296 RPGSIVVYIEPWHRDIFDFLDLKKNTGKEEMRARNLFLGLWIPDLFMRRVEEDGDWCLFC 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN  +GL + +G +F++LY  YE
Sbjct: 356 PNLAKGLHEKYGSEFEELYTTYE 378



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 2/137 (1%)

Query: 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRL 607
           QF  +K K    + +K+    + I  ++     A      N+   IGVQGLAD++I +  
Sbjct: 463 QFNFNKLKEVAKIVAKNL--NKIIDVNKYPLEEAKYSNLKNRPIGIGVQGLADVYILLGY 520

Query: 608 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           PF+  E+  LNK IFETIYYGALEASCE+A   GPY++Y GSPVSQGILQYDMW V P+D
Sbjct: 521 PFESKEAAELNKAIFETIYYGALEASCELAEIHGPYKSYAGSPVSQGILQYDMWDVQPSD 580

Query: 668 LWDWAALKVLALVYGLK 684
            WDWA LK     +G++
Sbjct: 581 RWDWAGLKKRIAAHGVR 597



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 36/42 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++   KLW AIL+++IETG PY+LYKD+CNRKSNQ+NL VI+
Sbjct: 387 VISARKLWKAILEAEIETGVPYILYKDSCNRKSNQKNLGVIK 428



 Score = 44.3 bits (103), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 730 TGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           T  +T +IS    EI+MKN +RL++AI  DRDF +++FG K
Sbjct: 112 TDLKTEIISPDIIEIVMKNKERLDAAIQNDRDFEFSYFGIK 152


>gi|365987435|ref|XP_003670549.1| hypothetical protein NDAI_0E04890 [Naumovozyma dairenensis CBS 421]
 gi|343769319|emb|CCD25306.1| hypothetical protein NDAI_0E04890 [Naumovozyma dairenensis CBS 421]
          Length = 915

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/479 (62%), Positives = 386/479 (80%), Gaps = 6/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGQWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD +GE+F++LY +YE EG+  + + A+KLW++IL++Q ETGTP++LYKDACN
Sbjct: 353 PSSAPGLSDCYGEEFEELYTRYEREGRG-KTIKAQKLWYSILEAQTETGTPFILYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 EKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +++K++T+NLN++ID N+YPV EARNSNMRHRPI +GVQGLAD ++ +R+PF+ +E+++L
Sbjct: 472 EISKVITRNLNRVIDRNYYPVPEARNSNMRHRPIALGVQGLADTYMLLRMPFESDEAKIL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+ +LEASCE+A +DGPY  +E SP ++GILQ DMW   P  +WDW  L+  
Sbjct: 532 NKQIFETIYHASLEASCELAQKDGPYLNFEDSPSAKGILQMDMWNQKPFGMWDWDTLRND 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K+G+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IRKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  +I  NGSIQ++  +P +LK LYKT+WEI QKT++DMAADR  +IDQS S
Sbjct: 652 LGIWDDGMKQHIITENGSIQNLPNVPDELKKLYKTIWEISQKTIIDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           +N+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+  +A+  AS  A
Sbjct: 712 MNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQA-IADKAASNIA 769



 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 123/198 (62%), Positives = 155/198 (78%), Gaps = 1/198 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L+  I K+G+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQMDMWNQKPFGMWDWDTLRNDIRKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD MK  +I  NGSIQ++  +P +LK LYKT+WE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDGMKQHIITENGSIQNLPNVPDELKKLYKTIWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT++DMAADR  +IDQS S+N+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIIDMAADRSIYIDQSHSMNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFTID+  +A+  AS
Sbjct: 750 AAIQFTIDQA-IADKAAS 766



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEQNGQWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GLSD +GE+F++LY +YE EG
Sbjct: 353 PSSAPGLSDCYGEEFEELYTRYEREG 378



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +R+PF+ +E+++LNKQIFETIY+ +LEASCE+A +DGPY  +E SP 
Sbjct: 506 ALGVQGLADTYMLLRMPFESDEAKILNKQIFETIYHASLEASCELAQKDGPYLNFEDSPS 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           ++GILQ DMW   P  +WDW  L+     YGL+
Sbjct: 566 AKGILQMDMWNQKPFGMWDWDTLRNDIRKYGLR 598



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q   VI+ L++ +N  TG   PMIS+  Y I+M N D LNS+I+YDRDF +N+FGFK
Sbjct: 90  TTKQFSTVIQNLHDYINPATGKHAPMISEDVYSIVMDNKDELNSSIVYDRDFQFNYFGFK 149



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP++LYKDACN KSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFILYKDACNEKSNQKNLGVIK 423


>gi|334327874|ref|XP_001363871.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Monodelphis domestica]
          Length = 755

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/506 (62%), Positives = 380/506 (75%), Gaps = 50/506 (9%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D WGE+F+ LY+ YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDDVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNM++   + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMFVT-LEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPVPEASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A   GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKVLKEKIAKY 591

Query: 391 ---GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
              G+RN                                       ++VN HLL+DL E 
Sbjct: 592 LDGGIRN---------------------------------------EIVNPHLLKDLTER 612

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++ MK+Q+I  NGSIQ I  IP+ LK LYKTVWEI QKTVL MAADRGAFIDQSQSL
Sbjct: 613 GLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKTVWEISQKTVLKMAADRGAFIDQSQSL 672

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           NI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT               + 
Sbjct: 673 NIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFT-------LNKEKLKEKE 725

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCI 593
           +     ++E+  AAM+C  +N+++C+
Sbjct: 726 KVLKDEEKERNTAAMVCSLENRDECL 751



 Score =  222 bits (566), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 116/232 (50%), Positives = 143/232 (61%), Gaps = 49/232 (21%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKH---GVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            +YDMW V PTDLWDW  LKEKIAK+   G+RN                           
Sbjct: 566 LQYDMWNVAPTDLWDWKVLKEKIAKYLDGGIRN--------------------------- 598

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
                       ++VN HLL+DL E GLW++ MK+Q+I  NGSIQ I  IP+ LK LYKT
Sbjct: 599 ------------EIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPEDLKQLYKT 646

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEI QKTVL MAADRGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 647 VWEISQKTVLKMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 706

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           PAAN IQFT               + +     ++E+  AAM+C  +N+++CL
Sbjct: 707 PAANPIQFT-------LNKEKLKEKEKVLKDEEKERNTAAMVCSLENRDECL 751



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDVFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVENNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL D WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDDVWGEEFEKLYESYEKQGRV 380



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 76/95 (80%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASCE+A   
Sbjct: 491 ASLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 675
           GPY+TYEGSPVS+GILQYDMW V PTDLWDW  LK
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKVLK 585



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N      +PM++    ++++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPYNSKHSPMVAKSTLDVVLANKDRLNSAIIYDRDFSYNYFGFK 149


>gi|373447499|gb|AEY72884.1| ribonucleotide reductase large subunit [Vaccinia virus]
 gi|373449162|gb|AEY74540.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 763

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/466 (65%), Positives = 378/466 (81%), Gaps = 11/466 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQY        DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQY--------DLWNWEPLKDKIRTY 582

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 583 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 642

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 643 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 701

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 702 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 747



 Score =  273 bits (698), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/197 (64%), Positives = 163/197 (82%), Gaps = 1/197 (0%)

Query: 764 YNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823
           Y+ +   Y   G+   DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPY
Sbjct: 552 YDTYVGSYASNGILQYDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPY 611

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TSNIY+RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +Y
Sbjct: 612 TSNIYTRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVY 670

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KT+WEIPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLR
Sbjct: 671 KTIWEIPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLR 730

Query: 944 TKPAANAIQFTIDKTKM 960
           TKPA+  IQFT+DK K+
Sbjct: 731 TKPASAPIQFTLDKDKI 747



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 69/104 (66%), Gaps = 8/104 (7%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQY        DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQY--------DLWNWEPLKDKIRTYGLR 585



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|66475480|ref|XP_627556.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
 gi|46229284|gb|EAK90133.1| ribonucleotide-diphosphate reductase large chain; RIR1; c-terminal
           PFL-like glycyl radical enzymes-like fold
           [Cryptosporidium parvum Iowa II]
          Length = 804

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/513 (60%), Positives = 400/513 (77%), Gaps = 6/513 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMC
Sbjct: 292 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL D WG+ F  LY++YE +G+  + + A+KLWF IL +QIETGTP++ YKDA N
Sbjct: 352 PDECRGLQDVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI  SNLCTEI+EYTS DEVAVCNLASI L  +++  +KT++F KLK+V K
Sbjct: 412 SKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFDKLKEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNK+IDV +Y ++E + SN+RHRP+GIG+QGLAD F+ +R+P++   ++ LNKQI
Sbjct: 472 VITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FE IYY AL+ASCE+A + GPY+TY GSP S+GILQ+DMWGVTP + L DW  LK++I+K
Sbjct: 532 FEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCDWDLLKDRISK 591

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLLI+PMPTAST+QILGNNESFEP+TSNIY RRVLSGEF VVN HLL DL+ELGL
Sbjct: 592 HGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGL 651

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD +K  +I NNGSIQ+I  IP+ +++LYKTVWEI QKTV+DMAADRG ++ QSQSLNI
Sbjct: 652 WDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNI 711

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M   N+AK+SSMHF+GWK GLKTG+YYLRT+ A   IQFT+D+  + +    KD+    
Sbjct: 712 HMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSETKEKDSLETN 771

Query: 570 EIQADQEQAMAAMIC-----RRDNKEDCIGVQG 597
           + QA + +A   + C        + E+C+   G
Sbjct: 772 KRQALEPEAQKLIACPLRPTNMKDDEECMMCSG 804



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP + L DW  LK++I+KHG+RNSLLI+PMPTAST+QILGNNESFEP+TSNI
Sbjct: 566 LQFDMWGVTPDSGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNI 625

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL+ELGLWDD +K  +I NNGSIQ+I  IP+ +++LYKTVW
Sbjct: 626 YHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVW 685

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKTV+DMAADRG ++ QSQSLNI+M   N+AK+SSMHF+GWK GLKTG+YYLRT+ A
Sbjct: 686 EIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSA 745

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
              IQFT+D+  + +    KD+    + QA + +A   + C
Sbjct: 746 TRPIQFTVDQQLLKSETKEKDSLETNKRQALEPEAQKLIAC 786



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMC
Sbjct: 292 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ CRGL D WG+ F  LY++YE +G
Sbjct: 352 PDECRGLQDVWGDDFKKLYEEYEKQG 377



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P++   ++ LNKQIFE IYY AL+ASCE+A + GPY+TY GSP S
Sbjct: 503 IGIQGLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPAS 562

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP + L DW  LK     +G++
Sbjct: 563 KGILQFDMWGVTPDSGLCDWDLLKDRISKHGIR 595



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWF IL +QIETGTP++ YKDA N KSNQ+NL  I
Sbjct: 387 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTI 422



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     G+  ++L D  A +  A +      F+ L ++I T     L+K+  +  
Sbjct: 39  VTQAVINGLYSGIKTSEL-DELASQTCAYMAATHNDFSKLAARISTSN---LHKNTSSDI 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
                 +V  +LYN  + + G   P+IS   Y+ IM+N +R+NS I + +DF Y++F FK
Sbjct: 95  G-----DVASQLYNFKDNQ-GCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFK 148


>gi|374724342|gb|EHR76422.1| ribonucleoside-diphosphate reductase alpha chain [uncultured marine
           group II euryarchaeote]
          Length = 797

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/504 (61%), Positives = 384/504 (76%), Gaps = 6/504 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH DI  FL+LKKN GKEE RARDLFY LW PD FM RVE +A WS  C
Sbjct: 295 RKGSIAIYLEPWHPDILAFLDLKKNHGKEELRARDLFYALWTPDLFMERVEQNADWSFFC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D++G  F  LY+KYE+EG     +PAR +W  +++SQIETGTPYMLYKDA N
Sbjct: 355 PNECPGLQDAYGADFKALYEKYESEGLARETLPARTVWDKVVESQIETGTPYMLYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+ SNLCTEI+EYT+KDEVAVCNLASIALN Y++  + T+N   L DV  
Sbjct: 415 EKSNQKNLGTIRSSNLCTEIMEYTAKDEVAVCNLASIALNKYVDLENSTFNHQLLYDVTY 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLN++IDVN+YPVEEARNSNMRHRPIG+GVQGLAD F  ++LPF+  ++R LNK+I
Sbjct: 475 HATGNLNRVIDVNYYPVEEARNSNMRHRPIGLGVQGLADTFALLQLPFESPQARALNKEI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-PTDLWDWAALKEKIAK 389
           FETIY+ A  AS + A  +G Y T++GSP S+G LQ+D+WG+   +  WDW  LK +I +
Sbjct: 535 FETIYFAACTASKDAAIAEGAYSTFQGSPASKGELQFDLWGMNDHSGRWDWTTLKGEIIE 594

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTAST+QILGNNE FE +TSN+Y RR LSGEF V+N HL+RDL+ L L
Sbjct: 595 HGMRNSLLLAPMPTASTSQILGNNECFEAFTSNLYVRRTLSGEFIVLNKHLVRDLIALDL 654

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W  NMKD+++ + GSIQ IEGIP+ +K LYKT WEI Q+ VLDMAADRGA++DQSQS+NI
Sbjct: 655 WSLNMKDEILRHKGSIQAIEGIPEHIKALYKTTWEIKQRHVLDMAADRGAYVDQSQSMNI 714

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M + N AK++SMHF+GWK GLKTGMYYLRTK AA+AIQFT++  K  +      A   E
Sbjct: 715 HMVDANPAKVTSMHFYGWKQGLKTGMYYLRTKAAADAIQFTVEAKKGEDQTVGGLADRAE 774

Query: 570 EIQADQEQAMAAMICRRDNKEDCI 593
           EI      ++ A+ C  D  +DC+
Sbjct: 775 EI-----SSLEAIACSLDTPDDCL 793



 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/230 (57%), Positives = 171/230 (74%), Gaps = 6/230 (2%)

Query: 769 FKYDMWGVT-PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+WG+   +  WDW  LK +I +HG+RNSLL+APMPTAST+QILGNNE FE +TSN+
Sbjct: 569 LQFDLWGMNDHSGRWDWTTLKGEIIEHGMRNSLLLAPMPTASTSQILGNNECFEAFTSNL 628

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RR LSGEF V+N HL+RDL+ L LW  NMKD+++ + GSIQ IEGIP+ +K LYKT W
Sbjct: 629 YVRRTLSGEFIVLNKHLVRDLIALDLWSLNMKDEILRHKGSIQAIEGIPEHIKALYKTTW 688

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ VLDMAADRGA++DQSQS+NI+M + N AK++SMHF+GWK GLKTGMYYLRTK A
Sbjct: 689 EIKQRHVLDMAADRGAYVDQSQSMNIHMVDANPAKVTSMHFYGWKQGLKTGMYYLRTKAA 748

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           A+AIQFT++  K  +          EEI      ++ A+ C  D  +DCL
Sbjct: 749 ADAIQFTVEAKKGEDQTVGGLADRAEEI-----SSLEAIACSLDTPDDCL 793



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 65/88 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH DI  FL+LKKN GKEE RARDLFY LW PD FM RVE +A WS  C
Sbjct: 295 RKGSIAIYLEPWHPDILAFLDLKKNHGKEELRARDLFYALWTPDLFMERVEQNADWSFFC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL D++G  F  LY+KYE+EGL 
Sbjct: 355 PNECPGLQDAYGADFKALYEKYESEGLA 382



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD F  ++LPF+  ++R LNK+IFETIY+ A  AS + A  +G Y T++GSP S
Sbjct: 506 LGVQGLADTFALLQLPFESPQARALNKEIFETIYFAACTASKDAAIAEGAYSTFQGSPAS 565

Query: 653 QGILQYDMWGVT-PTDLWDWAALKVLALVYGLK 684
           +G LQ+D+WG+   +  WDW  LK   + +G++
Sbjct: 566 KGELQFDLWGMNDHSGRWDWTTLKGEIIEHGMR 598



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 43/66 (65%)

Query: 705 DACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNY 764
           D  +R + +   +VI +L   ++ E+    P+IS++ Y IIM+NA+ LN+ + Y RD NY
Sbjct: 86  DDLHRSTKETFTDVITDLREYIDPESKKHAPLISEEVYSIIMENAEVLNNHVNYSRDHNY 145

Query: 765 NFFGFK 770
           ++FGFK
Sbjct: 146 DYFGFK 151



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 29/35 (82%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +W  +++SQIETGTPYMLYKDA N KSNQ+NL  I
Sbjct: 391 VWDKVVESQIETGTPYMLYKDAANEKSNQKNLGTI 425


>gi|347535525|ref|YP_004842950.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           branchiophilum FL-15]
 gi|345528683|emb|CCB68713.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           branchiophilum FL-15]
          Length = 796

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/468 (63%), Positives = 382/468 (81%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RV+ DA W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDAHWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + +GE+F+ LY  YE +GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYEVYGEQFETLYTSYEIQGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTI+ SNLCTEI+EYTSKDE+AVCNLAS++L M++      +N   L  VAK
Sbjct: 412 QKSNQKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFVEKGK--FNHKLLYKVAK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+E  NSNMRHRPIG+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEGENSNMRHRPIGLGVQGLADAFIMLRLPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  DG Y TYEGSP+SQG+ QY++WG+   DL   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEDGAYSTYEGSPISQGLFQYNLWGLQDADLSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            ++GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 LQYGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVKL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W D++K +++  NGS+Q+I  IP+ LK+LYKTVWE+  K ++DM+  RG F+DQSQSL
Sbjct: 650 GIWTDDLKQEIMRQNGSVQNINAIPKDLKELYKTVWEMSMKDIIDMSKHRGYFVDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           N++M + NYAK++SMHF+ W+ GLKTGMYYLRTK A +AI+FT++  K
Sbjct: 710 NLFMQDANYAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAIKFTLNNDK 757



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 163/194 (84%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   DL   WDWA+L++++ ++GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGLQDADLSGRWDWASLRKEVLQYGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LG+W D++K +++  NGS+Q+I  IP+ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLNDLVKLGIWTDDLKQEIMRQNGSVQNINAIPKDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG F+DQSQSLN++M + NYAK++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSKHRGYFVDQSQSLNLFMQDANYAKLTSMHFYAWQSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK 959
            A +AI+FT++  K
Sbjct: 744 SAVDAIKFTLNNDK 757



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RV+ DA W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDAHWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL + +GE+F+ LY  YE +G
Sbjct: 352 PNECPGLYEVYGEQFETLYTSYEIQG 377



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ A+ AS E+A  DG Y TYEGSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDEAKKLNQEIFETLYFAAVTASMEMAKEDGAYSTYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG+ QY++WG+   DL   WDWA+L+   L YG++
Sbjct: 561 QGLFQYNLWGLQDADLSGRWDWASLRKEVLQYGVR 595



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA N+KSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANQKSNQKNLGTI 422



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 38/54 (70%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + + ++Y  VN  T    P++SD+ Y +I++NA  L+S IIY RDFNY++FGFK
Sbjct: 95  DTMTDMYQYVNPRTNQAAPLLSDEVYRVIIENAAFLDSHIIYTRDFNYDYFGFK 148


>gi|209878422|ref|XP_002140652.1| ribonucleoside-diphosphate reductase, large subunit
           [Cryptosporidium muris RN66]
 gi|209556258|gb|EEA06303.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Cryptosporidium muris RN66]
          Length = 809

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/515 (61%), Positives = 400/515 (77%), Gaps = 8/515 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLEPWH DI +F+E++KN GKEE R RD+F  LWIPD FM RVE DA W+LMC
Sbjct: 295 RKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVEKDANWTLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C G+ D WG++F +LY+ YE EG+  + + A+ LWFA+L SQIETGTP++ YKDA N
Sbjct: 355 PDECPGMQDVWGDQFKELYEHYEKEGRGRKTIKAQSLWFALLQSQIETGTPFICYKDAAN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLASI L  +++  +K ++F KL +V K
Sbjct: 415 RKSNQQNLGTIKSSNLCTEIMEYTSSDEVAVCNLASIGLPRFVDRENKKFDFKKLYEVVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  +NLNK+ID  +YP+ E R SN+RHRP+G+GVQGLAD F+ +R P++  ++R LN +I
Sbjct: 475 VAIRNLNKVIDRGYYPIPECRRSNLRHRPLGLGVQGLADCFMILRYPYESKDARKLNIEI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIYY AL+ASCE+A + GPY+T++GSP S+G+LQ+D+W V P+  LW+W  LKEKIAK
Sbjct: 535 FETIYYAALDASCELAEKYGPYETFQGSPASRGLLQFDLWNVQPSSGLWNWDLLKEKIAK 594

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G+RNSLL+APMPTAST+Q+LGNNESFEP+TSNIY RRVLSGEF VVN HLL DL+ELGL
Sbjct: 595 YGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGL 654

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD+ +K  +I NNGS+Q+IE IP+ ++DLYKTVWEI QK V+DMAADRG +I QSQSLNI
Sbjct: 655 WDERLKQNIIANNGSVQNIESIPRDIRDLYKTVWEIRQKAVIDMAADRGPYICQSQSLNI 714

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM---ANAMASKDAR 566
           Y+A  NYAK+SSMHF+GWK GLKTG YYLRT+ AAN IQFTID+  +   A+    +DA+
Sbjct: 715 YIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSAANPIQFTIDQQLLKSTADKNKEQDAK 774

Query: 567 SQEEIQADQEQAMAAMIC--RRDN--KEDCIGVQG 597
                 + Q    + M C  R  N   E+C+   G
Sbjct: 775 RPALQNSSQGDGRSVMACPLRPANLQGEECLMCSG 809



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 146/237 (61%), Positives = 180/237 (75%), Gaps = 8/237 (3%)

Query: 769 FKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W V P+  LW+W  LKEKIAK+G+RNSLL+APMPTAST+Q+LGNNESFEP+TSNI
Sbjct: 569 LQFDLWNVQPSSGLWNWDLLKEKIAKYGLRNSLLVAPMPTASTSQLLGNNESFEPFTSNI 628

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL+ELGLWD+ +K  +I NNGS+Q+IE IP+ ++DLYKTVW
Sbjct: 629 YHRRVLSGEFFVVNPHLLNDLLELGLWDERLKQNIIANNGSVQNIESIPRDIRDLYKTVW 688

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK V+DMAADRG +I QSQSLNIY+A  NYAK+SSMHF+GWK GLKTG YYLRT+ A
Sbjct: 689 EIRQKAVIDMAADRGPYICQSQSLNIYIANANYAKLSSMHFYGWKKGLKTGSYYLRTQSA 748

Query: 948 ANAIQFTIDKTKM---ANAMASKDTRSQEEIQADQEQAMAAMIC--RRDN--KEDCL 997
           AN IQFTID+  +   A+    +D +      + Q    + M C  R  N   E+CL
Sbjct: 749 ANPIQFTIDQQLLKSTADKNKEQDAKRPALQNSSQGDGRSVMACPLRPANLQGEECL 805



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLEPWH DI +F+E++KN GKEE R RD+F  LWIPD FM RVE DA W+LMC
Sbjct: 295 RKGALAVYLEPWHADILEFIEIRKNHGKEEMRCRDIFPALWIPDLFMERVEKDANWTLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C G+ D WG++F +LY+ YE EG
Sbjct: 355 PDECPGMQDVWGDQFKELYEHYEKEG 380



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 76/105 (72%), Gaps = 4/105 (3%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           CRR N   +   +GVQGLAD F+ +R P++  ++R LN +IFETIYY AL+ASCE+A + 
Sbjct: 494 CRRSNLRHRPLGLGVQGLADCFMILRYPYESKDARKLNIEIFETIYYAALDASCELAEKY 553

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           GPY+T++GSP S+G+LQ+D+W V P+  LW+W  LK     YGL+
Sbjct: 554 GPYETFQGSPASRGLLQFDLWNVQPSSGLWNWDLLKEKIAKYGLR 598



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFA+L SQIETGTP++ YKDA NRKSNQQNL  I+
Sbjct: 391 LWFALLQSQIETGTPFICYKDAANRKSNQQNLGTIK 426



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 731 GTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           G   P++S   YE I++N DRLNS I + RDF Y++F FK
Sbjct: 112 GNPAPLLSQTVYEFIIENKDRLNSVIDFSRDFEYDYFAFK 151


>gi|18266787|sp|O61065.2|RIR1_CRYPV RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|8365757|gb|AAC12280.2| ribonucleotide reductase R1 subunit [Cryptosporidium parvum]
 gi|32398776|emb|CAD98486.1| ribonucleoside-diphosphate reductase large chain [Cryptosporidium
           parvum]
          Length = 803

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/513 (60%), Positives = 400/513 (77%), Gaps = 6/513 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMC
Sbjct: 291 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ CRGL D WG+ F  LY++YE +G+  + + A+KLWF IL +QIETGTP++ YKDA N
Sbjct: 351 PDECRGLQDVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAAN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI  SNLCTEI+EYTS DEVAVCNLASI L  +++  +KT++F KLK+V K
Sbjct: 411 SKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFDKLKEVTK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNK+IDV +Y ++E + SN+RHRP+GIG+QGLAD F+ +R+P++   ++ LNKQI
Sbjct: 471 VITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKLNKQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FE IYY AL+ASCE+A + GPY+TY GSP S+GILQ+DMWGVTP + L DW  LK++I+K
Sbjct: 531 FEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCDWDLLKDRISK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLLI+PMPTAST+QILGNNESFEP+TSNIY RRVLSGEF VVN HLL DL+ELGL
Sbjct: 591 HGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WDD +K  +I NNGSIQ+I  IP+ +++LYKTVWEI QKTV+DMAADRG ++ QSQSLNI
Sbjct: 651 WDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +M   N+AK+SSMHF+GWK GLKTG+YYLRT+ A   IQFT+D+  + +    KD+    
Sbjct: 711 HMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSETKEKDSLETN 770

Query: 570 EIQADQEQAMAAMIC-----RRDNKEDCIGVQG 597
           + QA + +A   + C        + E+C+   G
Sbjct: 771 KRQALEPEAQKLIACPLRPTNMKDDEECMMCSG 803



 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP + L DW  LK++I+KHG+RNSLLI+PMPTAST+QILGNNESFEP+TSNI
Sbjct: 565 LQFDMWGVTPDSGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL+ELGLWDD +K  +I NNGSIQ+I  IP+ +++LYKTVW
Sbjct: 625 YHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKTV+DMAADRG ++ QSQSLNI+M   N+AK+SSMHF+GWK GLKTG+YYLRT+ A
Sbjct: 685 EIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSA 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
              IQFT+D+  + +    KD+    + QA + +A   + C
Sbjct: 745 TRPIQFTVDQQLLKSETKEKDSLETNKRQALEPEAQKLIAC 785



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMC
Sbjct: 291 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ CRGL D WG+ F  LY++YE +G
Sbjct: 351 PDECRGLQDVWGDDFKKLYEEYEKQG 376



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P++   ++ LNKQIFE IYY AL+ASCE+A + GPY+TY GSP S
Sbjct: 502 IGIQGLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPAS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP + L DW  LK     +G++
Sbjct: 562 KGILQFDMWGVTPDSGLCDWDLLKDRISKHGIR 594



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWF IL +QIETGTP++ YKDA N KSNQ+NL  I
Sbjct: 386 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTI 421



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     G+  ++L D  A +  A +      F+ L ++I T     L+K+  +  
Sbjct: 38  VTQAVINGLYSGIKTSEL-DELASQTCAYMAATHNDFSKLAARISTSN---LHKNTSSDI 93

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
                 +V  +LYN  + + G   P+IS   Y+ IM+N +R+NS I + +DF Y++F FK
Sbjct: 94  G-----DVASQLYNFKDNQ-GCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFK 147


>gi|403218291|emb|CCK72782.1| hypothetical protein KNAG_0L01620 [Kazachstania naganishii CBS
           8797]
          Length = 904

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/467 (63%), Positives = 380/467 (81%), Gaps = 5/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEANEDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD +G++F+ LY KYE EG+  + + A+KLW++IL++Q ETGTP+M+YKDACN
Sbjct: 353 PSSAPGLSDIYGDEFEALYTKYEREGRG-KTIKAQKLWYSILEAQTETGTPFMIYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           +KSNQ+NLGTIK SNLC EIVEY+  +E AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 QKSNQKNLGTIKSSNLCCEIVEYSDPNETAVCNLASVALPAFIETSEDGTSSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK++T+NLNK+ID N+YPV EAR SNMRHRPI +GVQGLAD F+ +RLPF+  E+RLL
Sbjct: 472 EIAKVITRNLNKVIDRNYYPVPEARRSNMRHRPIALGVQGLADTFMLLRLPFESPEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N+QIFETIY+ +LEASCE+A +DG Y+T++ SP +QG+LQ DMW   P  +WDW  L++ 
Sbjct: 532 NEQIFETIYHASLEASCELAQKDGTYETFKTSPSAQGVLQMDMWNAKPYGMWDWDTLRDD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y RRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYQRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+W+++MK  LI  NGSIQ +  IPQ+LKDLYKTVWEI QK +++MAADR  +IDQS S
Sbjct: 652 LGIWNESMKQHLITANGSIQSLPNIPQELKDLYKTVWEISQKQIINMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +N+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 MNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758



 Score =  268 bits (686), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 121/189 (64%), Positives = 151/189 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQMDMWNAKPYGMWDWDTLRDDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +LLRDLV+LG+W+++MK  LI  NGSIQ +  IPQ+LKDLYKTVWE
Sbjct: 630 QRRVLSGEFQVVNPYLLRDLVDLGIWNESMKQHLITANGSIQSLPNIPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +++MAADR  +IDQS S+N+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKQIINMAADRSIYIDQSHSMNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEANEDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GLSD +G++F+ LY KYE EG
Sbjct: 353 PSSAPGLSDIYGDEFEALYTKYEREG 378



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 75/104 (72%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPF+  E+RLLN+QIFETIY+ +LEASCE+A +D
Sbjct: 495 ARRSNMRHRPIALGVQGLADTFMLLRLPFESPEARLLNEQIFETIYHASLEASCELAQKD 554

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G Y+T++ SP +QG+LQ DMW   P  +WDW  L+   + +GL+
Sbjct: 555 GTYETFKTSPSAQGVLQMDMWNAKPYGMWDWDTLRDDIVKHGLR 598



 Score = 79.3 bits (194), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 75/127 (59%), Gaps = 9/127 (7%)

Query: 644 QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLY 703
           Q  +   V+Q I+     GVT ++L + AA +  A +  +   +A L +++         
Sbjct: 32  QRIDAVKVTQRIISGVYEGVTTSELDNLAA-ETCAYMTTVHPDYATLAARVAISN----- 85

Query: 704 KDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFN 763
               ++++ +Q  +V+ +L++ +N  TG   PMISD+ ++I+MKN D +NSAI+YDRDF 
Sbjct: 86  ---LHKQTTKQFSQVVADLHDYINPATGKHAPMISDEVFDIVMKNKDAINSAIVYDRDFQ 142

Query: 764 YNFFGFK 770
           +N+FGFK
Sbjct: 143 FNYFGFK 149



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+M+YKDACN+KSNQ+NL  I+
Sbjct: 387 KLWYSILEAQTETGTPFMIYKDACNQKSNQKNLGTIK 423


>gi|395802145|ref|ZP_10481398.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           sp. F52]
 gi|395435386|gb|EJG01327.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           sp. F52]
          Length = 797

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/505 (60%), Positives = 398/505 (78%), Gaps = 7/505 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIFDFL+LKKN GKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNHGKEEMRARDLFFAMWTSDLFMKRVQEDGPWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY  YEA+GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGDEFEALYTGYEAQGKGRKTIRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN +NLGTI+ SNLCTEI+E+TSKDE+AVCNLASI+L M++   +  +N   L +V K
Sbjct: 412 RKSNHKNLGTIRSSNLCTEIMEFTSKDEIAVCNLASISLPMFVENGE--FNHESLYNVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRP+G+GVQGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVQEAENSNMRHRPVGLGVQGLADAFIMLRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+EGSP+S+G  QY+MWG+   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSTFEGSPMSKGEFQYNMWGLKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVKL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++ +NGS+Q+I  IPQ LKDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRHNGSVQNINIIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M + NY+K++SMHF+ W+ GLKTGMYYLRTK A +AI+FT++  K      S   + 
Sbjct: 710 NLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNNDKKQETAPSL-VQK 768

Query: 568 QEEIQADQEQAMAAMICRRDNKEDC 592
            E I  +  +AM  +  +  + EDC
Sbjct: 769 TESISVEDYKAM-LLKAQAADPEDC 792



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 132/231 (57%), Positives = 179/231 (77%), Gaps = 5/231 (2%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWG+   +L   WDWA+L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGLKDEELSGRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW++++K +++ +NGS+Q+I  IPQ LKDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVKLGLWNEDLKQEIMRHNGSVQNINIIPQDLKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M + NY+K++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A +AI+FT++  K      S   +  E I  +  +AM  +  +  + EDC
Sbjct: 744 AAVDAIKFTLNNDKKQETAPSL-VQKTESISVEDYKAM-LLKAQAADPEDC 792



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIFDFL+LKKN GKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNHGKEEMRARDLFFAMWTSDLFMKRVQEDGPWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++F+ LY  YEA+G
Sbjct: 352 PNECPGLYDVYGDEFEALYTGYEAQG 377



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWG+   +L   WDWA+L+   + +G++
Sbjct: 561 KGEFQYNMWGLKDEELSGRWDWASLRKEVMEHGVR 595



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++Y+ VN   G   P+I+D  Y++I +NA  L+S IIY RDFNY++FGFK
Sbjct: 95  ETMKDMYHYVNPRNGQDAPLIADDVYKVIQENAAFLDSHIIYTRDFNYDYFGFK 148



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSN +NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNHKNLGTI 422


>gi|281204858|gb|EFA79053.1| ribonucleotide reductase large subunit [Polysphondylium pallidum
           PN500]
          Length = 868

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/482 (65%), Positives = 387/482 (80%), Gaps = 6/482 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DI +FL+L+KN GKEE RARDLFY LW+ D FM RVE+D  W+L C
Sbjct: 316 RKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWVSDLFMERVENDDVWNLFC 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-AEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GL+D WG++F  LY+KYE   G   R + A+ LWF I++SQIETGTPY LYKDAC
Sbjct: 376 PNEAPGLADCWGDEFRALYEKYENTPGLSRRTIKAQDLWFTIIESQIETGTPYFLYKDAC 435

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKL 265
           N KSNQQNLGTI+CSNLCTEI++YTS DEVAVCNLASIAL  Y+    +T    ++   L
Sbjct: 436 NSKSNQQNLGTIQCSNLCTEIIQYTSADEVAVCNLASIALPKYVRENKETGKPEFDHQYL 495

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +V K +T+NLNKIID N+YPV EARNSN RHRPIGIG+QGLAD+FI++RLPF+ N + +
Sbjct: 496 FEVTKTITRNLNKIIDRNYYPVLEARNSNFRHRPIGIGIQGLADVFIRLRLPFESNGAAI 555

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LNK+I ETIY+ AL AS E+A RDGPY++++GSP S+G LQ D W VTP+  WDW +LK+
Sbjct: 556 LNKEIAETIYFAALTASAELAERDGPYESFKGSPASKGTLQQDFWNVTPSPRWDWTSLKQ 615

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           KI   G+RNSLLIAPMPTAST+QILGNNE+FEPYTSNIYSRRVL+GEF VVN  LL+DL+
Sbjct: 616 KIISTGLRNSLLIAPMPTASTSQILGNNEAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLM 675

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +L LW   MK+Q+I + GSIQ+IE IP  LK+LYKTVWEI Q+T++DMAADRGAFIDQSQ
Sbjct: 676 DLDLWTPEMKNQIIAHRGSIQNIEDIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQ 735

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           S N+++AE  + K++SMHF+ WK GLKTGMYYLRT+ AA+AIQFT+D+T +AN    KDA
Sbjct: 736 SFNVFIAEPTFQKLTSMHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQTMLANK-EQKDA 794

Query: 566 RS 567
            +
Sbjct: 795 NA 796



 Score =  275 bits (703), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 138/217 (63%), Positives = 171/217 (78%), Gaps = 8/217 (3%)

Query: 754 SAIIYDRDFNYNFF--------GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 805
           SA + +RD  Y  F          + D W VTP+  WDW +LK+KI   G+RNSLLIAPM
Sbjct: 572 SAELAERDGPYESFKGSPASKGTLQQDFWNVTPSPRWDWTSLKQKIISTGLRNSLLIAPM 631

Query: 806 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVN 865
           PTAST+QILGNNE+FEPYTSNIYSRRVL+GEF VVN  LL+DL++L LW   MK+Q+I +
Sbjct: 632 PTASTSQILGNNEAFEPYTSNIYSRRVLAGEFTVVNKQLLQDLMDLDLWTPEMKNQIIAH 691

Query: 866 NGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSS 925
            GSIQ+IE IP  LK+LYKTVWEI Q+T++DMAADRGAFIDQSQS N+++AE  + K++S
Sbjct: 692 RGSIQNIEDIPDDLKELYKTVWEIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFQKLTS 751

Query: 926 MHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
           MHF+ WK GLKTGMYYLRT+ AA+AIQFT+D+T +AN
Sbjct: 752 MHFYAWKKGLKTGMYYLRTRAAADAIQFTVDQTMLAN 788



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 65/83 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DI +FL+L+KN GKEE RARDLFY LW+ D FM RVE+D  W+L C
Sbjct: 316 RKGAFAVYLEPWHADIVEFLDLRKNHGKEEMRARDLFYALWVSDLFMERVENDDVWNLFC 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN   GL+D WG++F  LY+KYE
Sbjct: 376 PNEAPGLADCWGDEFRALYEKYE 398



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD+FI++RLPF+ N + +LNK+I ETIY+ AL AS E+A RDGPY++++GSP S
Sbjct: 532 IGIQGLADVFIRLRLPFESNGAAILNKEIAETIYFAALTASAELAERDGPYESFKGSPAS 591

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ D W VTP+  WDW +LK   +  GL+
Sbjct: 592 KGTLQQDFWNVTPSPRWDWTSLKQKIISTGLR 623



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF I++SQIETGTPY LYKDACN KSNQQNL  I+
Sbjct: 413 LWFTIIESQIETGTPYFLYKDACNSKSNQQNLGTIQ 448



 Score = 58.2 bits (139), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 630 LEASCEIAAR-DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFA 688
           L++ C++  + +G  +  + S V+Q +      GV  T+L + AA +  A +      + 
Sbjct: 42  LQSLCDLEPKLNG--EVIDPSEVTQKVASGVFPGVKTTELDNLAA-ETAAYMSTKHPDYG 98

Query: 689 ILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKN 748
           +L ++I             +++++   LE +E+ ++  N +TG   P++SD+ Y ++  +
Sbjct: 99  VLAARISVSN--------LHKQTSSSFLETVEKQHSFTNPKTGQPAPLVSDELYNLVKIH 150

Query: 749 ADRLNSAIIYDRDFNYNFFGFK 770
             RL  AI Y RDF Y+FFGFK
Sbjct: 151 HKRLEEAIDYRRDFEYDFFGFK 172


>gi|305665629|ref|YP_003861916.1| putative ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
 gi|88710385|gb|EAR02617.1| probable ribonucleoside-diphosphate reductase large chain
           [Maribacter sp. HTCC2170]
          Length = 825

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/532 (60%), Positives = 399/532 (75%), Gaps = 31/532 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIF+FLELKKN GKEE RARDLFY +WI D FM+RVE++ +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL  +  E+F+ LY KYE+E K  + V AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLFTNHSEEFEKLYLKYESENKGRKTVRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGE--FDHKELFRVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFILLRLPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E A  +G Y +Y+GSP+SQG  Q+++WG+   +L   WDW  L++ +
Sbjct: 530 FETLYFAAVTASMEAAKEEGKYSSYDGSPISQGEFQHNLWGIKDEELSGRWDWTKLRKDV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W++NMK +L+  NGSIQ IE IPQ ++DLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GMWNENMKQELMRANGSIQHIETIPQDIRDLYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK------------ 555
           N++M   NY+K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D +K            
Sbjct: 710 NLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLDNSKKKEEPVEAEVPL 769

Query: 556 -------MANAMASKD---ARSQE-EIQADQEQAMAAMICRRDNKE---DCI 593
                  +ANA+  K    A  QE +IQ    Q M  MI R    +   DC+
Sbjct: 770 AATPAPGVANAIEVKPTPVAPQQELDIQPMSPQEMKEMIARAKEGQADDDCL 821



 Score =  280 bits (716), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 140/258 (54%), Positives = 180/258 (69%), Gaps = 29/258 (11%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++ + K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDEELSGRWDWTKLRKDVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LG+W++NMK +L+  NGSIQ IE IPQ ++DLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVNLGMWNENMKQELMRANGSIQHIETIPQDIRDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK-------------------MANAMASKDT----RSQEEIQADQEQA 982
            A +AI+FT+D +K                   +ANA+  K T    + + +IQ    Q 
Sbjct: 744 AAVDAIKFTLDNSKKKEEPVEAEVPLAATPAPGVANAIEVKPTPVAPQQELDIQPMSPQE 803

Query: 983 MAAMICRRDNKE---DCL 997
           M  MI R    +   DCL
Sbjct: 804 MKEMIARAKEGQADDDCL 821



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 69/85 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIF+FLELKKN GKEE RARDLFY +WI D FM+RVE++ +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFEFLELKKNHGKEEMRARDLFYAMWISDLFMKRVEANEEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C GL  +  E+F+ LY KYE+E
Sbjct: 352 PNECPGLFTNHSEEFEKLYLKYESE 376



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 63/86 (73%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ A+ AS E A  +G Y +Y+GSP+S
Sbjct: 501 LGVQGLADAFILLRLPFTSDEAKKLNQEIFETLYFAAVTASMEAAKEEGKYSSYDGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           QG  Q+++WG+   +L   WDW  L+
Sbjct: 561 QGEFQHNLWGIKDEELSGRWDWTKLR 586



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 64/109 (58%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E +E+
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYAKLAARISVSN--------LHKNTKKSFSETMED 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P++SD+ Y++I +N+  L+S IIY+RDF Y++FGFK
Sbjct: 100 LYTYVNPRTGKKAPLLSDEVYKVIAENSVALDSTIIYNRDFGYDYFGFK 148



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 32/40 (80%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 383 VRARELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|403215030|emb|CCK69530.1| hypothetical protein KNAG_0C04280 [Kazachstania naganishii CBS
           8797]
          Length = 845

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/476 (63%), Positives = 382/476 (80%), Gaps = 6/476 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEANGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD WGE+++ LY++YE EG+  + + A KLW+AIL++Q ETGTP+M+YKDACN
Sbjct: 353 PSDAPGLSDVWGEEYEQLYERYEREGRG-KTIKAHKLWYAILEAQTETGTPFMIYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQQNLGTIK SNLC EIVEY++ DE AVCNLASIAL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQQNLGTIKSSNLCCEIVEYSAPDETAVCNLASIALPAFIETSEDGKVSTYNFDKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +++K+VT NLN++ID N+YPV EA NSNMRHRPI +GVQGLAD ++ +RLPF+  E+R L
Sbjct: 472 EISKVVTHNLNRVIDNNYYPVPEAENSNMRHRPIALGVQGLADTYMLLRLPFESEEARTL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+ +LEASCE+A +DG Y ++EG P+S+GI Q DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHASLEASCELAQKDGTYSSWEGCPMSKGIFQMDMWDAKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HG+RNSL +APMPTAST+QI+G NE FEP TSN+Y RRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IIEHGLRNSLTMAPMPTASTSQIMGYNECFEPLTSNMYQRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD++MK  LI  NGSIQ +  IP +LK+LYKTVWEI QK +L+MAADR  +IDQS S
Sbjct: 652 LGVWDESMKQHLITANGSIQGLPNIPDELKELYKTVWEISQKKILEMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ K+A+  A+
Sbjct: 712 LNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-KVADRAAT 766



 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 157/198 (79%), Gaps = 1/198 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+ DMW   P  +WDW  L++ I +HG+RNSL +APMPTAST+QI+G NE FEP TSN+Y
Sbjct: 570 FQMDMWDAKPFGMWDWETLRKDIIEHGLRNSLTMAPMPTASTSQIMGYNECFEPLTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +LLRDLV+LG+WD++MK  LI  NGSIQ +  IP +LK+LYKTVWE
Sbjct: 630 QRRVLSGEFQVVNPYLLRDLVDLGVWDESMKQHLITANGSIQGLPNIPDELKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L+MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKKILEMAADRSIYIDQSHSLNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFTID+ K+A+  A+
Sbjct: 750 AAIQFTIDQ-KVADRAAT 766



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE++  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEANGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD WGE+++ LY++YE EG
Sbjct: 353 PSDAPGLSDVWGEEYEQLYERYEREG 378



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E+R LNKQIFETIY+ +LEASCE+A +DG Y ++EG P+
Sbjct: 506 ALGVQGLADTYMLLRLPFESEEARTLNKQIFETIYHASLEASCELAQKDGTYSSWEGCPM 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GI Q DMW   P  +WDW  L+   + +GL+
Sbjct: 566 SKGIFQMDMWDAKPFGMWDWETLRKDIIEHGLR 598



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+ +LY+ VN   G   PMISDK Y+I+MKN + LNS I+YDRDF YN+FGFK
Sbjct: 96  QVVSDLYHYVNPANGKHAPMISDKVYDIVMKNKELLNSTIVYDRDFAYNYFGFK 149



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+M+YKDACNRKSNQQNL  I+
Sbjct: 387 KLWYAILEAQTETGTPFMIYKDACNRKSNQQNLGTIK 423


>gi|426367047|ref|XP_004050549.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Gorilla gorilla gorilla]
          Length = 757

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/503 (63%), Positives = 384/503 (76%), Gaps = 42/503 (8%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL + WGE+F+ LY  YE +G+  + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+  ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID+N+YPV EA  SN RHRPIGIGVQGLAD FI MR PF+  E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASC++A   GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LKEKIAK 
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAK- 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
                                NN  ++ +             +++VN HLL+DL E GLW
Sbjct: 591 ---------------------NNGFWKSF-------------WRIVNPHLLKDLTERGLW 616

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I  NGSIQ I  IP  LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 617 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 676

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +         +  
Sbjct: 677 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 734

Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
               +E+  AAM+C  +N+++C+
Sbjct: 735 ----KERNTAAMVCSLENRDECL 753



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 117/229 (51%), Positives = 147/229 (64%), Gaps = 41/229 (17%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW  LKEKIAK                      NN  ++ +     
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAK----------------------NNGFWKSF----- 598

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
                   +++VN HLL+DL E GLW + MK+Q+I  NGSIQ I  IP  LK LYKTVWE
Sbjct: 599 --------WRIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 650

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 651 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 710

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           N IQFT++K K+ +         +      +E+  AAM+C  +N+++CL
Sbjct: 711 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 753



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 73/88 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL + WGE+F+ LY  YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 77/95 (81%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD FI MR PF+  E++LLNKQIFETIYYGALEASC++A   
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 675
           GPY+TYEGSPVS+GILQYDMW VTPTDLWDW  LK
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLK 585



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E+LYN +N   G  +PM++    +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96  DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149


>gi|399033616|ref|ZP_10732238.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           sp. CF136]
 gi|398068051|gb|EJL59512.1| ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           sp. CF136]
          Length = 796

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/508 (60%), Positives = 401/508 (78%), Gaps = 14/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDTTWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ LY  YE  GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGEEFEALYMDYEFRGKGRKTIRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSN +NLGTI+ SNLCTEI+EYTSKDE+AVCNLASI+L M+I   +  ++   L +V K
Sbjct: 412 RKSNHKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASISLPMFIE--NGKFDHQALYNVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRP+G+GVQGLAD FI +RLPF  +E++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMLRLPFTSDEAKALNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+EGSP+S+G  QY+MWG+   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSTFEGSPMSKGEFQYNMWGMKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVE 
Sbjct: 590 VEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVER 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++ +K +++ +NGS+Q+I+ IPQ LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNETLKQEIMRHNGSVQNIDVIPQDLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID---KTKMANAMASKD 564
           N++M + NY+K++SMHF+ W+ GLKTGMYYLRTK A +AI+FT++   K ++ + +A  +
Sbjct: 710 NLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTKSAVDAIKFTLNNDKKEEVPSLVAETE 769

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKEDC 592
             S E+ +A   +A AA      + EDC
Sbjct: 770 EISVEDYKAMLLKAQAA------DPEDC 791



 Score =  279 bits (714), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 133/234 (56%), Positives = 183/234 (78%), Gaps = 12/234 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWG+   +L   WDWA+L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGMKDEELSGRWDWASLRKEVVEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVE GLW++ +K +++ +NGS+Q+I+ IPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLHDLVERGLWNETLKQEIMRHNGSVQNIDVIPQDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M + NY+K++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQDANYSKLTSMHFYAWQSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTID---KTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A +AI+FT++   K ++ + +A  +  S E+ +A   +A AA      + EDC
Sbjct: 744 SAVDAIKFTLNNDKKEEVPSLVAETEEISVEDYKAMLLKAQAA------DPEDC 791



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDTTWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ LY  YE  G
Sbjct: 352 PNECPGLYDVYGEEFEALYMDYEFRG 377



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDEAKALNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWG+   +L   WDWA+L+   + +G++
Sbjct: 561 KGEFQYNMWGMKDEELSGRWDWASLRKEVVEHGVR 595



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 40/54 (74%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E ++++Y+ VN   G   P++SD+ +++I +NA  L+S IIY RDFNY++FGFK
Sbjct: 95  ETMKDMYHYVNPRNGQDAPLLSDEVFKVIQENAAFLDSHIIYTRDFNYDYFGFK 148



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSN +NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNHKNLGTI 422


>gi|50290817|ref|XP_447841.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527152|emb|CAG60790.1| unnamed protein product [Candida glabrata]
          Length = 894

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/468 (64%), Positives = 384/468 (82%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 292 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTLFS 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD +G++F++LY++YE EG+  + + A+KLW++IL++Q ETGTP+M+YKDACN
Sbjct: 352 PSSAPGLSDCYGKEFEELYERYEREGRG-KTIKAQKLWYSILEAQTETGTPFMIYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSNQ+NLG IK SNLC EIVEY+S DE AVCNLASIAL  +I  ++     TYNF KL 
Sbjct: 411 EKSNQRNLGVIKSSNLCCEIVEYSSPDETAVCNLASIALPAFIETSEDGKTSTYNFQKLH 470

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+AK++T+NLNK+ID N+YPV EA+NSNMRHRPI +GVQGLAD F+ +RLPFD   +  L
Sbjct: 471 DIAKVITRNLNKVIDRNYYPVPEAKNSNMRHRPIALGVQGLADTFMLLRLPFDSEGAAKL 530

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ +LEASCE+A +DGPYQ+Y+GSP+S+G+ Q+DMW   P  +WDW AL++ 
Sbjct: 531 NIQIFETIYHASLEASCELAQKDGPYQSYQGSPISKGVFQFDMWNAKPFGMWDWDALRKD 590

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 591 ILKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 650

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  +I  NGSIQ++  IPQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 651 LGIWDEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 710

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID++
Sbjct: 711 LNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQS 758



 Score =  281 bits (718), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/190 (66%), Positives = 157/190 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW   P  +WDW AL++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 569 FQFDMWNAKPFGMWDWDALRKDILKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 628

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  +I  NGSIQ++  IPQ+LKDLYKTVWE
Sbjct: 629 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQHIITQNGSIQNLPNIPQELKDLYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 689 ISQKTIINMAADRSVYIDQSHSLNLFLQAPTMGKITSMHFYGWKKGLKTGMYYLRTQAAS 748

Query: 949 NAIQFTIDKT 958
            AIQFTID++
Sbjct: 749 AAIQFTIDQS 758



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD   +  LN QIFETIY+ +LEASCE+A +DGPYQ+Y+GSP+
Sbjct: 505 ALGVQGLADTFMLLRLPFDSEGAAKLNIQIFETIYHASLEASCELAQKDGPYQSYQGSPI 564

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+G+ Q+DMW   P  +WDW AL+   L +G++
Sbjct: 565 SKGVFQFDMWNAKPFGMWDWDALRKDILKHGVR 597



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 61/75 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LW+PD FM+RVE +  W+L  
Sbjct: 292 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWVPDLFMKRVEQNGNWTLFS 351

Query: 61  PNACRGLSDSWGEKF 75
           P++  GLSD +G++F
Sbjct: 352 PSSAPGLSDCYGKEF 366



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 38  VTQRIISGVYEGVTTVELDNLAA-ETCAYMTTIHPDYATLAARVAISN--------LHKQ 88

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+  LY+ +N  TG   PMISD+ Y+I+M N D L+SAI+YDRDF +N+FGFK
Sbjct: 89  TTKQFSQVVSNLYHYINPATGKHAPMISDEVYQIVMDNKDELDSAIVYDRDFQFNYFGFK 148



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+M+YKDACN KSNQ+NL VI+
Sbjct: 386 KLWYSILEAQTETGTPFMIYKDACNEKSNQRNLGVIK 422


>gi|163753570|ref|ZP_02160693.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
 gi|161325784|gb|EDP97110.1| ribonucleoside diphosphate reductase, alpha subunit [Kordia
           algicida OT-1]
          Length = 812

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/478 (64%), Positives = 384/478 (80%), Gaps = 5/478 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +   E+F+ LY KYEAEGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPNLFNVHSEEFEALYLKYEAEGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGGE--FDHKELFRVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSN RHRPIG+GVQGLAD FI++R+PF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNFRHRPIGLGVQGLADTFIKLRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPYQTYEGSP+S+G  Q+++WG+   +L   WDW  L++++
Sbjct: 530 FETLYFAAVTASMEMAKIEGPYQTYEGSPMSKGEFQHNLWGIKDEELSGRWDWGKLRKQV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           AK+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 AKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVNL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW +++K +L+  NGSIQ I+ IPQ +KDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWTEDLKQELMRANGSIQHIDEIPQDIKDLYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           N++M     AK++SMHF+ W+ GLKTGMYYLRTK A +AI+FT+ K K + A+ ++ A
Sbjct: 710 NLFMEGATMAKLTSMHFYAWRSGLKTGMYYLRTKSAVDAIKFTVKKAKKSIAVPAEAA 767



 Score =  270 bits (690), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 124/202 (61%), Positives = 162/202 (80%), Gaps = 3/202 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++++AK+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDEELSGRWDWGKLRKQVAKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW +++K +L+  NGSIQ I+ IPQ +KDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVNLGLWTEDLKQELMRANGSIQHIDEIPQDIKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M     AK++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWRSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASK 967
            A +AI+FT+ K K + A+ ++
Sbjct: 744 SAVDAIKFTVKKAKKSIAVPAE 765



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVEENGPWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L +   E+F+ LY KYEAEG
Sbjct: 352 PNECPNLFNVHSEEFEALYLKYEAEG 377



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 67/86 (77%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +GPYQTYEGSP+S
Sbjct: 501 LGVQGLADTFIKLRMPFTSDEAKKLNQEIFETLYFAAVTASMEMAKIEGPYQTYEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           +G  Q+++WG+   +L   WDW  L+
Sbjct: 561 KGEFQHNLWGIKDEELSGRWDWGKLR 586



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E + +
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYARLAARISVSN--------LHKNTKKSFSETMVD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P++SD+ Y +IM+NADRL+S IIY+RDF Y++FGFK
Sbjct: 100 LYEYVNPRTGKKAPLLSDEVYNVIMENADRLDSTIIYNRDFGYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|336171887|ref|YP_004579025.1| ribonucleoside-diphosphate reductase subunit alpha [Lacinutrix sp.
           5H-3-7-4]
 gi|334726459|gb|AEH00597.1| ribonucleoside-diphosphate reductase, alpha subunit [Lacinutrix sp.
           5H-3-7-4]
          Length = 827

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/491 (61%), Positives = 386/491 (78%), Gaps = 5/491 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+LKKN G EE RARDLFY +W+PD FM+RV+ DAQW+LMC
Sbjct: 292 RKGSFAMYIEPWHADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D   E+F+ LY KYEAEGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVHSEEFEALYTKYEAEGKGRKSIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS+DEVAVCNLASIAL M++   +  ++  +L  + K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSEDEVAVCNLASIALPMFVKNGE--FDHKELFRITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV+EA NSN RHRP+G+GVQGLAD FI++R+PF  + ++ LN+ I
Sbjct: 470 RVTKNLNKVIDRNYYPVKEAENSNFRHRPVGLGVQGLADAFIKLRMPFTSDAAKQLNQDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---TPTDLWDWAALKEKI 387
           FET+YY A+ AS E A  DGPYQTYEGSP+S+G  Q+++W +   T +  WDW  L++++
Sbjct: 530 FETLYYAAVTASMEEAQVDGPYQTYEGSPMSKGEFQHNLWNIQEDTLSGRWDWEKLRKQV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           AKHGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 AKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVDL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K++++  NGSIQ +E IPQ +KDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKNEIMRANGSIQHVENIPQDIKDLYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M     AK++SMHF+ WK GLKTGMYYLRTK A +A + TI +   A  +  + A  
Sbjct: 710 NLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAKKVTISRATKAAPVTKEVAVD 769

Query: 568 QEEIQADQEQA 578
            + +   Q+ A
Sbjct: 770 NDGVAQKQQTA 780



 Score =  267 bits (682), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/219 (57%), Positives = 167/219 (76%), Gaps = 4/219 (1%)

Query: 769 FKYDMWGV---TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++W +   T +  WDW  L++++AKHGVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWNIQEDTLSGRWDWEKLRKQVAKHGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW++++K++++  NGSIQ +E IPQ +KDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVDLGLWNEDLKNEIMRANGSIQHVENIPQDIKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M     AK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMA 984
            A +A + TI +   A A  +K+     +  A ++Q  A
Sbjct: 744 SAVDAKKVTISRATKA-APVTKEVAVDNDGVAQKQQTAA 781



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+LKKN G EE RARDLFY +W+PD FM+RV+ DAQW+LMC
Sbjct: 292 RKGSFAMYIEPWHADIFNFLDLKKNHGAEELRARDLFYAMWMPDLFMKRVQEDAQWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D   E+F+ LY KYEAEG
Sbjct: 352 PNECPGLCDVHSEEFEALYTKYEAEG 377



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF  + ++ LN+ IFET+YY A+ AS E A  DGPYQTYEGSP+S
Sbjct: 501 LGVQGLADAFIKLRMPFTSDAAKQLNQDIFETLYYAAVTASMEEAQVDGPYQTYEGSPMS 560

Query: 653 QGILQYDMWGV---TPTDLWDWAALKVLALVYGLK 684
           +G  Q+++W +   T +  WDW  L+     +G++
Sbjct: 561 KGEFQHNLWNIQEDTLSGRWDWEKLRKQVAKHGVR 595



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+ +LY  VN  TG + P++SD+ Y +IM+N ++L+SAIIY+RDF Y++FGFK
Sbjct: 95  DVMTDLYQYVNPRTGKKAPLLSDEVYNVIMENKEKLDSAIIYNRDFGYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|392397203|ref|YP_006433804.1| ribonucleoside-diphosphate reductase subunit alpha [Flexibacter
           litoralis DSM 6794]
 gi|390528281|gb|AFM04011.1| ribonucleoside-diphosphate reductase, alpha subunit [Flexibacter
           litoralis DSM 6794]
          Length = 842

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/507 (60%), Positives = 390/507 (76%), Gaps = 7/507 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWI D FM+RV+ D +WSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLKKNHGKEEARARDLFYALWISDIFMKRVQEDGEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  RGL+D +G + ++LY +YE EGK  + + A++LWFAIL++QIETGTPYMLYKD  N
Sbjct: 353 PNEARGLADCYGTEHEELYTRYEREGKARKTIRAQELWFAILEAQIETGTPYMLYKDHAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
            KSNQ+NLGTIK SNLCTEI+EYT+ DEVAVCNLAS+AL  ++  N     +N  KL +V
Sbjct: 413 NKSNQKNLGTIKSSNLCTEIMEYTAPDEVAVCNLASLALPKFVMDNGNGLEFNHEKLYEV 472

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A   T NLN+IID N+YPVEEARNSNMRHRPIG+GVQGLAD FI +R+PF+  E+  LNK
Sbjct: 473 AYTATVNLNRIIDRNYYPVEEARNSNMRHRPIGLGVQGLADAFILLRMPFESEEAAALNK 532

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFET+Y+ A+ AS ++A  +G Y+T+EGSP+S+G  Q+DMW V     +  W+W  L+ 
Sbjct: 533 EIFETMYFAAMTASKDLAITEGAYETFEGSPLSKGQFQFDMWNVDEDYHSGRWNWEELRG 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++ KHG RNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVLSGEF VVN HLL+DL+
Sbjct: 593 EVVKHGARNSLLLAPMPTASTSQILGNNECFEPYTSNIYVRRVLSGEFVVVNKHLLKDLI 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            + +WDD MK++LI  NGS+Q+I+ IPQ+LKD+YKTVWEI Q+T++DM+ADRG +I QSQ
Sbjct: 653 AIDMWDDQMKNELISANGSVQNIKRIPQELKDIYKTVWEISQRTIIDMSADRGVYICQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK--TKMANAMASK 563
           SLN+++    + K++SMHFH WK GLKTGMYYLRTK AA+AI+FT+DK   ++    A  
Sbjct: 713 SLNVHIQNPTFGKLTSMHFHAWKRGLKTGMYYLRTKAAADAIKFTVDKDALEIGKDTAIN 772

Query: 564 DARSQEEIQADQEQAMAAMICRRDNKE 590
                EEI A   + M  M    D +E
Sbjct: 773 HKAKAEEIVAQSNEEMLEMAGAGDMEE 799



 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 171/231 (74%), Gaps = 5/231 (2%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++DMW V     +  W+W  L+ ++ KHG RNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 569 FQFDMWNVDEDYHSGRWNWEELRGEVVKHGARNSLLLAPMPTASTSQILGNNECFEPYTS 628

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY RRVLSGEF VVN HLL+DL+ + +WDD MK++LI  NGS+Q+I+ IPQ+LKD+YKT
Sbjct: 629 NIYVRRVLSGEFVVVNKHLLKDLIAIDMWDDQMKNELISANGSVQNIKRIPQELKDIYKT 688

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEI Q+T++DM+ADRG +I QSQSLN+++    + K++SMHFH WK GLKTGMYYLRTK
Sbjct: 689 VWEISQRTIIDMSADRGVYICQSQSLNVHIQNPTFGKLTSMHFHAWKRGLKTGMYYLRTK 748

Query: 946 PAANAIQFTIDK--TKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKE 994
            AA+AI+FT+DK   ++    A       EEI A   + M  M    D +E
Sbjct: 749 AAADAIKFTVDKDALEIGKDTAINHKAKAEEIVAQSNEEMLEMAGAGDMEE 799



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+FL+LKKN GKEE RARDLFY LWI D FM+RV+ D +WSL C
Sbjct: 293 RKGAFAVYLEPWHADVFEFLDLKKNHGKEEARARDLFYALWISDIFMKRVQEDGEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  RGL+D +G + ++LY +YE EG
Sbjct: 353 PNEARGLADCYGTEHEELYTRYEREG 378



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 66/95 (69%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF+  E+  LNK+IFET+Y+ A+ AS ++A  +G Y+T+EGSP+S
Sbjct: 506 LGVQGLADAFILLRMPFESEEAAALNKEIFETMYFAAMTASKDLAITEGAYETFEGSPLS 565

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+DMW V     +  W+W  L+   + +G +
Sbjct: 566 KGQFQFDMWNVDEDYHSGRWNWEELRGEVVKHGAR 600



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL++QIETGTPYMLYKD  N KSNQ+NL  I+
Sbjct: 388 ELWFAILEAQIETGTPYMLYKDHANNKSNQKNLGTIK 424



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
           +AIL S+I     +   KDA +        E IEELYN +N +T     +ISD+  +++ 
Sbjct: 74  YAILASRIAISNLHKETKDAFS--------ETIEELYNYINPKTNESAGLISDEVVQVVR 125

Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
           K A  LN A+ Y RD+ Y++FGFK
Sbjct: 126 KYAHVLNQAVDYSRDYEYDYFGFK 149


>gi|399925485|ref|ZP_10782843.1| Ribonucleoside-diphosphate reductase, alpha subunit [Myroides
           injenensis M09-0166]
          Length = 794

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/507 (60%), Positives = 395/507 (77%), Gaps = 14/507 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DIF+F+EL+KN GKEE RARDLF  LW+ D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADIFEFIELRKNHGKEEMRARDLFLALWLNDLFMKRVEADDKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY  YE  GK  R + AR+LW AIL++QIETGTPYMLYKDA N
Sbjct: 352 PNECPGLCDVYGDEFEKLYISYENAGKGRRTIKARELWEAILEAQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG I+ SNLCTEI+EYTS DEVAVCNLASI+L M+I   +  + F  L DV K
Sbjct: 412 AKSNQKNLGVIRSSNLCTEIMEYTSPDEVAVCNLASISLPMFIENGEFNHQF--LYDVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVEEARNSNM+HRP+G+GVQGLAD FI +RLPF  + ++ LNK I
Sbjct: 470 RITRNLNRVIDRNYYPVEEARNSNMKHRPVGLGVQGLADAFIMLRLPFTNDAAKKLNKDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FETIY+ A+ AS E+A  +GPY T+EGSP+S+G  Q+++WG+   +L   WDW  L+ K+
Sbjct: 530 FETIYFAAVTASMELAIEEGPYSTFEGSPISKGEFQFNLWGINDDELSGRWDWNELRRKV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF +VN HLL+DLVEL
Sbjct: 590 IEHGVRNSLLLAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIIVNKHLLKDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++  NGSIQ I+ IP  +++LYKTVWE+  K ++DMA +RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRANGSIQHIDYIPADIRELYKTVWELSMKDIIDMAKERGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-KTKMANAMASKDAR 566
           N++M   NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D + K+ N +      
Sbjct: 710 NLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNQKKIQNVIV----- 764

Query: 567 SQEEIQADQEQAMAAMI-CRRDNKEDC 592
             EEI  D+ + M        +N +DC
Sbjct: 765 --EEINQDEYRTMIEKSRLASENDDDC 789



 Score =  276 bits (707), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 132/233 (56%), Positives = 177/233 (75%), Gaps = 12/233 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L+ K+ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQFNLWGINDDELSGRWDWNELRRKVIEHGVRNSLLLAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF +VN HLL+DLVELGLW++++K +++  NGSIQ I+ IP  +++LYKT
Sbjct: 624 NIYTRRVLSGEFIIVNKHLLKDLVELGLWNEDLKQEIMRANGSIQHIDYIPADIRELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DMA +RG FIDQSQSLN++M   NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMAKERGYFIDQSQSLNLFMEGANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTID-KTKMANAMASKDTRSQEEIQADQEQAMAAMI-CRRDNKEDC 996
            A +AI+FT+D + K+ N +        EEI  D+ + M        +N +DC
Sbjct: 744 SAVDAIKFTLDNQKKIQNVIV-------EEINQDEYRTMIEKSRLASENDDDC 789



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DIF+F+EL+KN GKEE RARDLF  LW+ D FM+RVE+D +W+LMC
Sbjct: 292 RKGSFAIYLEPWHADIFEFIELRKNHGKEEMRARDLFLALWLNDLFMKRVEADDKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++F+ LY  YE  G
Sbjct: 352 PNECPGLCDVYGDEFEKLYISYENAG 377



 Score =  106 bits (264), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 68/95 (71%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  + ++ LNK IFETIY+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTNDAAKKLNKDIFETIYFAAVTASMELAIEEGPYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+++WG+   +L   WDW  L+   + +G++
Sbjct: 561 KGEFQFNLWGINDDELSGRWDWNELRRKVIEHGVR 595



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+++LYN +N  T    P+I+D  Y++I  NA+RL+S IIY RDFNY++FGFK
Sbjct: 95  EVVDDLYNYINPRTNQEAPLIADDVYKVIKDNAERLDSTIIYQRDFNYDYFGFK 148



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW AIL++QIETGTPYMLYKDA N KSNQ+NL VI
Sbjct: 387 ELWEAILEAQIETGTPYMLYKDAANAKSNQKNLGVI 422


>gi|363582864|ref|ZP_09315674.1| ribonucleoside-diphosphate reductase large chain [Flavobacteriaceae
           bacterium HQM9]
          Length = 814

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/464 (64%), Positives = 378/464 (81%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFLEL+KN GKEE RARDLFY +WI D FM+RVE+D  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADEDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL D   E+F+ LY +YEAEGK  + V AR +W  +L+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPGLYDVHSEEFESLYTRYEAEGKGRKTVKARDVWEKVLESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DE+AVCNLASIAL M++      ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASIALPMFVKGG--KFDHDELYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLNK+ID N+YPV++A NSNMRHRP+G+G+QGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTKNLNKVIDRNYYPVKQAENSNMRHRPVGLGIQGLADTFIMLRMPFTSDEAKKLNEEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +G Y++YEGSP+S+G  Q+++WG+   +L   WDW  L++KI
Sbjct: 530 FETMYFAAVTASNELAEVEGTYESYEGSPISEGKFQFNLWGIKDEELSGRWDWNELRKKI 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVEL
Sbjct: 590 KKSGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W+D++KD ++  NGSIQ+IEG+PQ+LKDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GMWNDDLKDAIMRANGSIQNIEGMPQELKDLYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N++M     +K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+
Sbjct: 710 NLFMEGATMSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTL 753



 Score =  276 bits (705), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 125/190 (65%), Positives = 159/190 (83%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++KI K GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQFNLWGIKDEELSGRWDWNELRKKIKKSGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVELG+W+D++KD ++  NGSIQ+IEG+PQ+LKDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLHDLVELGMWNDDLKDAIMRANGSIQNIEGMPQELKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M     +K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMEGATMSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTI 955
            A +AI+FT+
Sbjct: 744 SAVDAIKFTL 753



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFLEL+KN GKEE RARDLFY +WI D FM+RVE+D  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLELRKNHGKEEMRARDLFYAMWISDLFMKRVEADEDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL D   E+F+ LY +YEAEG
Sbjct: 352 PHECPGLYDVHSEEFESLYTRYEAEG 377



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 65/86 (75%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +G Y++YEGSP+S
Sbjct: 501 LGIQGLADTFIMLRMPFTSDEAKKLNEEIFETMYFAAVTASNELAEVEGTYESYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           +G  Q+++WG+   +L   WDW  L+
Sbjct: 561 EGKFQFNLWGIKDEELSGRWDWNELR 586



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI++LY  VN  TG    +I+D  Y+++M+N ++L+S IIY+RDF+Y++FGFK
Sbjct: 95  EVIKDLYEYVNPRTGKGAALIADDVYKVVMENKEKLDSTIIYNRDFSYDYFGFK 148



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +W  +L+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 388 VWEKVLESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|409097320|ref|ZP_11217344.1| ribonucleoside-diphosphate reductase subunit alpha [Pedobacter agri
           PB92]
          Length = 794

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/508 (60%), Positives = 398/508 (78%), Gaps = 7/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWI D FM+RV+ +  W+L C
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYALWINDLFMQRVKDNGDWTLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F+DLY KYEAEG+  + + A++LWFAILDSQIETGTPYML+KDA N
Sbjct: 353 PHEAPGLADCFGKEFEDLYTKYEAEGRGRKTIKAQELWFAILDSQIETGTPYMLFKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EYTSKDEVAVCNLAS+AL  ++   +  ++  KL DV  
Sbjct: 413 SKSNQQNLGTIKSSNLCTEIIEYTSKDEVAVCNLASLALPRFV--INGQFDHQKLYDVTY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NLNKIID N+YPV+EA NSNMRHRP+G+GVQGLAD FI +RLPF+ +E++ LNK I
Sbjct: 471 QATLNLNKIIDHNYYPVQEAENSNMRHRPVGLGVQGLADAFILLRLPFESDEAKRLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ ++ AS ++A ++GPYQT+EGSP+S+G  Q+D+W VTP +  WDW AL++K+ K
Sbjct: 531 FETIYFASMTASNDLAVKNGPYQTFEGSPLSKGQFQFDLWNVTPDSGRWDWEALRKKVVK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            GV NSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL+DLV LGL
Sbjct: 591 DGVYNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLKDLVALGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+++MK+Q+I+ NGSIQ I  IP  +K+LYKTVWEI  + ++DMAADRGA+I QSQSLN+
Sbjct: 651 WNNDMKNQIILANGSIQAIPSIPDYIKELYKTVWEIKMRNIIDMAADRGAYICQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++   N +K++SMHF+ W+ GLKTGMYYLRT+ A+ A++FT++        A   A+  +
Sbjct: 711 FVNAPNTSKLTSMHFYAWEKGLKTGMYYLRTQAASQAVKFTVENQGGKAIEAVIPAQMTQ 770

Query: 570 EIQADQEQAMAAMICRRDNKEDCIGVQG 597
           +  A  E+ +   +C  +  E CI   G
Sbjct: 771 DQVA--EEIVDGPVCSME--EGCISCSG 794



 Score =  269 bits (688), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/189 (64%), Positives = 159/189 (84%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W VTP +  WDW AL++K+ K GV NSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDLWNVTPDSGRWDWEALRKKVVKDGVYNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF VVN HLL+DLV LGLW+++MK+Q+I+ NGSIQ I  IP  +K+LYKTVW
Sbjct: 625 YTRRVLSGEFVVVNKHLLKDLVALGLWNNDMKNQIILANGSIQAIPSIPDYIKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  + ++DMAADRGA+I QSQSLN+++   N +K++SMHF+ W+ GLKTGMYYLRT+ A
Sbjct: 685 EIKMRNIIDMAADRGAYICQSQSLNLFVNAPNTSKLTSMHFYAWEKGLKTGMYYLRTQAA 744

Query: 948 ANAIQFTID 956
           + A++FT++
Sbjct: 745 SQAVKFTVE 753



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWI D FM+RV+ +  W+L C
Sbjct: 293 RKGAFAIYLEPWHADVFEFLDLRKNHGKEEMRARDLFYALWINDLFMQRVKDNGDWTLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F+DLY KYEAEG
Sbjct: 353 PHEAPGLADCFGKEFEDLYTKYEAEG 378



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 68/84 (80%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF+ +E++ LNK IFETIY+ ++ AS ++A ++GPYQT+EGSP+S
Sbjct: 502 LGVQGLADAFILLRLPFESDEAKRLNKDIFETIYFASMTASNDLAVKNGPYQTFEGSPLS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALK 675
           +G  Q+D+W VTP +  WDW AL+
Sbjct: 562 KGQFQFDLWNVTPDSGRWDWEALR 585



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAILDSQIETGTPYML+KDA N KSNQQNL  I+
Sbjct: 388 ELWFAILDSQIETGTPYMLFKDAANSKSNQQNLGTIK 424



 Score = 59.7 bits (143), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA    +L       +A+L S+I       L+K+     S    +     
Sbjct: 50  GVTTSELDNLAAETAASLTTK-HPDYALLASRIAVSN---LHKNTTKSFSGTMKM----- 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY   + +     P+I+D  YEII KNAD L+S+IIYDRDF +++FGFK
Sbjct: 101 LYEYFDPKAQKPAPLIADDVYEIIAKNADILDSSIIYDRDFGFDYFGFK 149


>gi|407420213|gb|EKF38496.1| origin recognition complex subunit 1, putative,cell division cycle
           6, putative [Trypanosoma cruzi marinkellei]
          Length = 796

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/479 (63%), Positives = 381/479 (79%), Gaps = 2/479 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDQRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+T  GLSD +G+ F  LY+ YE E + ++ V A+ LWFAIL+SQ+ETG P+MLYKDACN
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERENRGVKTVQAQSLWFAILESQMETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+G IKCSNLCTEI+EYTSKDEVAVCNLASIAL  +++   + Y+  +L +V K
Sbjct: 423 RKSNQKNIGVIKCSNLCTEIIEYTSKDEVAVCNLASIALPRFVDKEKRMYDHQRLYEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++ID N YPV E+R SN  +RPIGIGVQG+AD FI MRLPF C E+R LN+ I
Sbjct: 483 IVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFILMRLPFTCQEARTLNEDI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIYYGA+EAS E+A  +GPY  + GSP SQG LQ+D+W   P +  WDW ALK ++ K
Sbjct: 543 FETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQKPRSGRWDWDALKRRVMK 602

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL++ GL
Sbjct: 603 SGMRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGL 662

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ M++Q+I  NGS+Q+I+GIP  LK+LY+ VWEI QK +++MA DRG FIDQSQSLN+
Sbjct: 663 WNEEMRNQIIAYNGSVQNIKGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNL 722

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++     ++++SMHF  W+ GLKTGMYYLR+KPAA+AI+FT+D   +   +  +D R Q
Sbjct: 723 FLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  259 bits (663), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 160/205 (78%), Gaps = 2/205 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P +  WDW ALK ++ K G+RNSLL+APMPTAST+QILGNNE FEP+TSNI
Sbjct: 577 LQFDLWEQKPRSGRWDWDALKRRVMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN +L+ DL++ GLW++ M++Q+I  NGS+Q+I+GIP  LK+LY+ VW
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIKGIPNDLKELYRVVW 696

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +++MA DRG FIDQSQSLN+++     ++++SMHF  W+ GLKTGMYYLR+KPA
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQ 972
           A+AI+FT+D   +   +  +D R Q
Sbjct: 757 ADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDQRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GLSD +G+ F  LY+ YE E
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERE 387



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQG+AD FI MRLPF C E+R LN+ IFETIYYGA+EAS E+A  +GPY  + 
Sbjct: 509 NRPIGIGVQGMADTFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFA 568

Query: 648 GSPVSQGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           GSP SQG LQ+D+W   P +  WDW ALK   +  G++
Sbjct: 569 GSPASQGQLQFDLWEQKPRSGRWDWDALKRRVMKSGMR 606



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL+SQ+ETG P+MLYKDACNRKSNQ+N+ VI+
Sbjct: 394 VQAQSLWFAILESQMETGVPFMLYKDACNRKSNQKNIGVIK 434



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 38/65 (58%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ ++   LE    L+     +TG   P++SD+ +E++ ++ ++L   + Y+RD  + 
Sbjct: 90  ALHKTTSASVLETFSILHKHKIHDTGREAPLLSDEVWEVVQRHHEQLQRMVDYNRDMRFE 149

Query: 766 FFGFK 770
           FFG+K
Sbjct: 150 FFGYK 154


>gi|89890042|ref|ZP_01201553.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
 gi|89518315|gb|EAS20971.1| ribonucleoside-diphosphate reductase large chain [Flavobacteria
           bacterium BBFL7]
          Length = 828

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/466 (64%), Positives = 378/466 (81%), Gaps = 5/466 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +W+ D FM+RVE++  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  L + +G++F+ LY KYE EGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PHECPDLYNVYGDEFEALYTKYEQEGKGRKTIQARELWDKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   D  ++   L  V K
Sbjct: 412 NKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIK--DGAFDHKALYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV EARNSNMRHRP+G+G+QGLAD FI +RLPF  +E++ LN +I
Sbjct: 470 RVTRNLNKVIDRNYYPVIEARNSNMRHRPVGLGIQGLADAFIMLRLPFTSDEAKKLNSEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A EAS E+A  +G Y T+EGSP+SQG  Q++MW +  +DL   W+W+ L+ K+
Sbjct: 530 FETLYFAACEASMEMAQEEGAYSTFEGSPMSQGEFQFNMWNINDSDLSGRWNWSDLRTKV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RR LSGEF VVN HLL+DLV+L
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRTLSGEFIVVNKHLLKDLVDL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLWDD++K+ ++ NNGSIQ IEGIP+ +K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKTVWELKMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           N++M  +  +K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+ K
Sbjct: 710 NLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTVTK 755



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 161/192 (83%), Gaps = 3/192 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+++MW +  +DL   W+W+ L+ K+ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQFNMWNINDSDLSGRWNWSDLRTKVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RR LSGEF VVN HLL+DLV+LGLWDD++K+ ++ NNGSIQ IEGIP+ +K+LYKT
Sbjct: 624 NIYTRRTLSGEFIVVNKHLLKDLVDLGLWDDSLKNAIMRNNGSIQAIEGIPEDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M  +  +K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELKMKDIIDMSRQRGYFIDQSQSLNLFMENVTTSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDK 957
            A +AI+FT+ K
Sbjct: 744 AAVDAIKFTVTK 755



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN GKEE RARDLFY +W+ D FM+RVE++  W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWMSDLFMKRVEANDTWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L + +G++F+ LY KYE EG
Sbjct: 352 PHECPDLYNVYGDEFEALYTKYEQEG 377



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +RLPF  +E++ LN +IFET+Y+ A EAS E+A  +G Y T+EGSP+S
Sbjct: 501 LGIQGLADAFIMLRLPFTSDEAKKLNSEIFETLYFAACEASMEMAQEEGAYSTFEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  Q++MW +  +DL   W+W+ L+   + +G++
Sbjct: 561 QGEFQFNMWNINDSDLSGRWNWSDLRTKVMEHGVR 595



 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+ +LY  VN  T  + PMISD+ Y++I  NADRLNSAIIY+RDF Y++FGFK
Sbjct: 95  DVVTDLYEYVNPRTEKKAPMISDEVYQVIQDNADRLNSAIIYNRDFGYDYFGFK 148



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA N KSNQ+NL  I
Sbjct: 387 ELWDKILESQIETGTPYMLYKDAANNKSNQKNLGTI 422


>gi|50305185|ref|XP_452551.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641684|emb|CAH01402.1| KLLA0C07887p [Kluyveromyces lactis]
          Length = 875

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/476 (64%), Positives = 384/476 (80%), Gaps = 4/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYIEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D++GE+F+++Y++YE EG+  + V A+KLW+AIL++Q ETGTP+MLYKDACN
Sbjct: 353 PNEAPGLPDAYGEEFEEMYERYEREGRGRKTVKAQKLWYAILEAQTETGTPFMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            KSNQ+NLGTIK SNLC EIVEY+   E AVCNLASIAL  +I  +     +TYNF KL 
Sbjct: 413 LKSNQKNLGTIKSSNLCCEIVEYSDPTETAVCNLASIALPAFIERSTDGKTQTYNFEKLH 472

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +AK++T+NLN+IID N+YPVE AR SNMRHRPI +GVQGLAD F+ +RLPFD  E++ L
Sbjct: 473 SIAKVLTRNLNRIIDRNYYPVETARRSNMRHRPIALGVQGLADAFMMLRLPFDSEEAKKL 532

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N +IFETIY+GA EAS E+A  +G Y+T+ GSP SQG LQ+D+WG TPT LWDW  LKE+
Sbjct: 533 NIEIFETIYHGACEASMELAKEEGHYETFPGSPASQGQLQFDLWGKTPTALWDWNTLKEQ 592

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I  +G+RNSLL+APMPTAST+QILG NE FEPYTSN+YSRRVLSGEFQ+VN +LL DLV+
Sbjct: 593 IKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMYSRRVLSGEFQIVNPYLLHDLVD 652

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  +I +NGSIQ++  IPQ+LKDLYKTVWE+ QK ++DMAADR A+IDQSQS
Sbjct: 653 LGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWELSQKHIIDMAADRAAYIDQSQS 712

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           LNI++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTIDK+    A  S
Sbjct: 713 LNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDKSVAEQAANS 768



 Score =  286 bits (733), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 163/198 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WG TPT LWDW  LKE+I  +G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 571 LQFDLWGKTPTALWDWNTLKEQIKLNGMRNSLLVAPMPTASTSQILGYNECFEPYTSNMY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQ+VN +LL DLV+LG+WD+ MK  +I +NGSIQ++  IPQ+LKDLYKTVWE
Sbjct: 631 SRRVLSGEFQIVNPYLLHDLVDLGIWDEAMKSHIIADNGSIQNLPNIPQELKDLYKTVWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADR A+IDQSQSLNI++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 691 LSQKHIIDMAADRAAYIDQSQSLNIHIRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 750

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFTIDK+    A  S
Sbjct: 751 AAIQFTIDKSVAEQAANS 768



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 73/104 (70%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +GVQGLAD F+ +RLPFD  E++ LN +IFETIY+GA EAS E+A  +
Sbjct: 496 ARRSNMRHRPIALGVQGLADAFMMLRLPFDSEEAKKLNIEIFETIYHGACEASMELAKEE 555

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G Y+T+ GSP SQG LQ+D+WG TPT LWDW  LK    + G++
Sbjct: 556 GHYETFPGSPASQGQLQFDLWGKTPTALWDWNTLKEQIKLNGMR 599



 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 60/75 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYIEPWHSDIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEKNQDWTLFS 352

Query: 61  PNACRGLSDSWGEKF 75
           PN   GL D++GE+F
Sbjct: 353 PNEAPGLPDAYGEEF 367



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           ++Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  ITQRIISGVYEGVTTVELDNLAA-ETCAYMTTIHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+++LY  VN  TG  +PMISD+ Y+I+M N D LNSAI+YDRDF +N+FGFK
Sbjct: 90  TTKQFSQVVDDLYQWVNPRTGIHSPMISDEVYKIVMDNKDTLNSAIVYDRDFQFNYFGFK 149



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW+AIL++Q ETGTP+MLYKDACN KSNQ+NL  I+
Sbjct: 384 VKAQKLWYAILEAQTETGTPFMLYKDACNLKSNQKNLGTIK 424


>gi|448100140|ref|XP_004199282.1| Piso0_002711 [Millerozyma farinosa CBS 7064]
 gi|359380704|emb|CCE82945.1| Piso0_002711 [Millerozyma farinosa CBS 7064]
          Length = 856

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/465 (64%), Positives = 375/465 (80%), Gaps = 3/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF  LELKKN GKEE RARDLFYGLWIPD FM RV+ +  WSL  
Sbjct: 299 RPGAFAIYLEPWHSDIFSLLELKKNHGKEELRARDLFYGLWIPDLFMHRVKENLDWSLFS 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +T  GLS+ +GE+F+ +Y++YE E K I+ V A++LW AIL+SQIETG PYMLYKD+CN
Sbjct: 359 SDTAPGLSECYGEEFNAVYERYEKENKAIKVVKAQRLWHAILESQIETGGPYMLYKDSCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
           +KSNQ+NLGTIK SNLC EI+EY+S +E AVCNL S+AL  +I+  +    ++F KL +V
Sbjct: 419 KKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFIDAENDLVAFDFVKLHEV 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++ KNL+KIIDV  YP+  A+ SNM+HRPI IGVQGLADLF+++RLPFD  ++++LN 
Sbjct: 479 TKVLAKNLDKIIDVTRYPIRSAQVSNMKHRPIAIGVQGLADLFLELRLPFDSQKAKMLNI 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKEKI 387
           QIFETIY+ A+EASCE+A   GPY ++ GSP+SQG  Q+DMW   P+ L+ DW  LKEK+
Sbjct: 539 QIFETIYHAAIEASCELAESFGPYDSFNGSPMSQGKFQFDMWSHKPSPLFADWDELKEKV 598

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQVVN +LLRDL++L
Sbjct: 599 KKTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLSGEFQVVNKYLLRDLIDL 658

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W  +MK +++  NGSIQ+I+GIPQ +KDLYKTVWEI QK V++MAADRG FIDQSQSL
Sbjct: 659 GIWSPSMKSRILAENGSIQNIKGIPQNIKDLYKTVWEISQKVVIEMAADRGKFIDQSQSL 718

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           NI+++     K++S HF+ WK GLKTGMYYLRT+ A  AIQFT+D
Sbjct: 719 NIHLSNPTLGKLTSCHFYAWKNGLKTGMYYLRTQAATRAIQFTVD 763



 Score =  278 bits (712), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/202 (64%), Positives = 163/202 (80%), Gaps = 1/202 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW   P+ L+ DW  LKEK+ K GVRNSLL+APMPTAST+QILG NE FEPYTSNI
Sbjct: 575 FQFDMWSHKPSPLFADWDELKEKVKKTGVRNSLLVAPMPTASTSQILGFNECFEPYTSNI 634

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQVVN +LLRDL++LG+W  +MK +++  NGSIQ+I+GIPQ +KDLYKTVW
Sbjct: 635 YNRRVLSGEFQVVNKYLLRDLIDLGIWSPSMKSRILAENGSIQNIKGIPQNIKDLYKTVW 694

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK V++MAADRG FIDQSQSLNI+++     K++S HF+ WK GLKTGMYYLRT+ A
Sbjct: 695 EISQKVVIEMAADRGKFIDQSQSLNIHLSNPTLGKLTSCHFYAWKNGLKTGMYYLRTQAA 754

Query: 948 ANAIQFTIDKTKMANAMASKDT 969
             AIQFT+D  +   A  +++T
Sbjct: 755 TRAIQFTVDMEEADKADIAQET 776



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF  LELKKN GKEE RARDLFYGLWIPD FM RV+ +  WSL  
Sbjct: 299 RPGAFAIYLEPWHSDIFSLLELKKNHGKEELRARDLFYGLWIPDLFMHRVKENLDWSLFS 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
            +   GLS+ +GE+F+ +Y++YE E
Sbjct: 359 SDTAPGLSECYGEEFNAVYERYEKE 383



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 95/153 (62%), Gaps = 6/153 (3%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A +    ++   IGVQGLADLF+++RLPFD  ++++LN QIFETIY+ A+EASCE+A  
Sbjct: 499 SAQVSNMKHRPIAIGVQGLADLFLELRLPFDSQKAKMLNIQIFETIYHAAIEASCELAES 558

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETG- 697
            GPY ++ GSP+SQG  Q+DMW   P+ L+ DW  LK      G++   ++L + + T  
Sbjct: 559 FGPYDSFNGSPMSQGKFQFDMWSHKPSPLFADWDELKEKVKKTGVR--NSLLVAPMPTAS 616

Query: 698 TPYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
           T  +L  + C     SN  N  V+   + +VNK
Sbjct: 617 TSQILGFNECFEPYTSNIYNRRVLSGEFQVVNK 649



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K + +V   +LW AIL+SQIETG PYMLYKD+CN+KSNQ+NL  I+
Sbjct: 385 KAIKVVKAQRLWHAILESQIETGGPYMLYKDSCNKKSNQRNLGTIK 430


>gi|50549777|ref|XP_502360.1| YALI0D03333p [Yarrowia lipolytica]
 gi|49648228|emb|CAG80548.1| YALI0D03333p [Yarrowia lipolytica CLIB122]
          Length = 849

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/470 (63%), Positives = 376/470 (80%), Gaps = 2/470 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DI DFL L+KN G EE RARDLFY LW+PD FMR+VE+  +WSL C
Sbjct: 291 RPGAFAVYLEPWHADILDFLNLRKNHGAEENRARDLFYALWVPDLFMRKVENGEKWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D WGE+FD  Y+ YE++G +  Q+ A++L+ AIL SQIETG P+MLYKD+CN
Sbjct: 351 PRKAPGLADVWGEEFDRKYEDYESKGLYNSQIDAQELFKAILTSQIETGGPFMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN--PADKTYNFTKLKDV 268
            KSNQ+NLGTIK SNLCTEIV+Y+S DEVAVCNLAS+AL  ++    +  +YNF +L + 
Sbjct: 411 AKSNQKNLGTIKSSNLCTEIVQYSSPDEVAVCNLASVALPEFVQLKGSSGSYNFGELHET 470

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K +T+NLN II+ N YPV+EA  SN RHRPI +GVQGLAD+F+++R+PFD  E+  LN 
Sbjct: 471 VKHMTRNLNCIIEANCYPVKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSPEAAELNV 530

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            IFETIY+ A EAS E+AA  GPY+TYEGSP SQG LQ+D+W  TP+DLWDWA LK K+A
Sbjct: 531 LIFETIYHAACEASIELAAELGPYETYEGSPASQGKLQFDLWNKTPSDLWDWARLKTKLA 590

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSLL+APMPTAST+QILG+NE FEPYTSNIY RRV +GEF VVN  L++DL++LG
Sbjct: 591 KHGMRNSLLVAPMPTASTSQILGHNECFEPYTSNIYLRRVQAGEFLVVNQWLMKDLIKLG 650

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W + MK+++I +NGSIQ I  IP+ ++ +Y+T WEI  + ++DMAA R  +IDQSQSLN
Sbjct: 651 MWTEEMKNRIIHDNGSIQSITQIPEHIRAVYRTAWEIKARNIIDMAAARAPYIDQSQSLN 710

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           I+M EI + K+++MHFHGWK GLKTGMYYLRT PAA+AIQFT+DKT + N
Sbjct: 711 IFMPEITHGKITAMHFHGWKAGLKTGMYYLRTPPAAHAIQFTVDKTLLQN 760



 Score =  283 bits (724), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 161/194 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W  TP+DLWDWA LK K+AKHG+RNSLL+APMPTAST+QILG+NE FEPYTSNIY
Sbjct: 567 LQFDLWNKTPSDLWDWARLKTKLAKHGMRNSLLVAPMPTASTSQILGHNECFEPYTSNIY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRV +GEF VVN  L++DL++LG+W + MK+++I +NGSIQ I  IP+ ++ +Y+T WE
Sbjct: 627 LRRVQAGEFLVVNQWLMKDLIKLGMWTEEMKNRIIHDNGSIQSITQIPEHIRAVYRTAWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  + ++DMAA R  +IDQSQSLNI+M EI + K+++MHFHGWK GLKTGMYYLRT PAA
Sbjct: 687 IKARNIIDMAAARAPYIDQSQSLNIFMPEITHGKITAMHFHGWKAGLKTGMYYLRTPPAA 746

Query: 949 NAIQFTIDKTKMAN 962
           +AIQFT+DKT + N
Sbjct: 747 HAIQFTVDKTLLQN 760



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DI DFL L+KN G EE RARDLFY LW+PD FMR+VE+  +WSL C
Sbjct: 291 RPGAFAVYLEPWHADILDFLNLRKNHGAEENRARDLFYALWVPDLFMRKVENGEKWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P    GL+D WGE+FD  Y+ YE++GL
Sbjct: 351 PRKAPGLADVWGEEFDRKYEDYESKGL 377



 Score =  125 bits (315), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 79/114 (69%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I+A+      A    + ++   +GVQGLAD+F+++R+PFD  E+  LN  IFETIY+ A 
Sbjct: 482 IEANCYPVKEAETSNKRHRPIAVGVQGLADVFMKLRMPFDSPEAAELNVLIFETIYHAAC 541

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           EAS E+AA  GPY+TYEGSP SQG LQ+D+W  TP+DLWDWA LK     +G++
Sbjct: 542 EASIELAAELGPYETYEGSPASQGKLQFDLWNKTPSDLWDWARLKTKLAKHGMR 595



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L+ AIL SQIETG P+MLYKD+CN KSNQ+NL  I+
Sbjct: 386 ELFKAILTSQIETGGPFMLYKDSCNAKSNQKNLGTIK 422



 Score = 39.7 bits (91), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 3/64 (4%)

Query: 708 NRKSNQQNLEVIEELYNMVNK-ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
           +++++ + + V+++LY+  NK ETG   P+++    E    + + L  AI Y RD  Y++
Sbjct: 86  HKQTSDKFVNVMQQLYD--NKDETGEHAPLVTLALLERAQNHGETLELAISYYRDMTYSY 143

Query: 767 FGFK 770
           FGFK
Sbjct: 144 FGFK 147


>gi|409124161|ref|ZP_11223556.1| ribonucleoside-diphosphate reductase large chain [Gillisia sp.
           CBA3202]
          Length = 824

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/466 (64%), Positives = 378/466 (81%), Gaps = 5/466 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE D  W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEKDENWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D  GE+F+ LY KYE EGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLFDIHGEEFEALYHKYEEEGKGRKSIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   +  ++  +L  + K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKGNE--FDHKELYKITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V KNLNK+ID N+YPV+EA NSN+RHRP+G+GVQGLAD FI++R+PF  +E++ LN++I
Sbjct: 470 RVIKNLNKVIDRNYYPVKEAENSNVRHRPVGLGVQGLADAFIKLRMPFTSDEAKALNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ ++ AS E+A  +GPY +YEGSP+S+G  QY+MWG+   DL   WDWA L++++
Sbjct: 530 FETLYFASVTASMELAIEEGPYSSYEGSPMSKGEFQYNMWGIKDEDLSGRWDWAKLRKQV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVE 
Sbjct: 590 MKNGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVER 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
            LW +++K+ ++  NGS+Q I+ IPQ LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 NLWTEDVKNAILRANGSVQGIDIIPQDLKELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           N++M   N +K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+ K
Sbjct: 710 NLFMENANNSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKK 755



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 157/192 (81%), Gaps = 3/192 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y+MWG+   DL   WDWA L++++ K+GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNMWGIKDEDLSGRWDWAKLRKQVMKNGVRNSLLMAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVE  LW +++K+ ++  NGS+Q I+ IPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVERNLWTEDVKNAILRANGSVQGIDIIPQDLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   N +K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMENANNSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDK 957
            A +AI+FT+ K
Sbjct: 744 SAVDAIKFTLKK 755



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIFDFL+LKKN GKEE RARDLFY +WIPD FM+RVE D  W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFDFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEKDENWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D  GE+F+ LY KYE EG
Sbjct: 352 PNECPGLFDIHGEEFEALYHKYEEEG 377



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++R+PF  +E++ LN++IFET+Y+ ++ AS E+A  +GPY +YEGSP+S
Sbjct: 501 LGVQGLADAFIKLRMPFTSDEAKALNQEIFETLYFASVTASMELAIEEGPYSSYEGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY+MWG+   DL   WDWA L+   +  G++
Sbjct: 561 KGEFQYNMWGIKDEDLSGRWDWAKLRKQVMKNGVR 595



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +A L ++I             ++ + +   EV+ +
Sbjct: 49  GVTTSELDNLAA-EVSATMTTSHPDYAKLAARISVSN--------LHKNTKKTFSEVMTD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           L+  VN  TG + P+++D+  ++I +N + L+S IIY+RDFNY++FGFK
Sbjct: 100 LHEYVNPRTGKKAPLLADEVQKVIQENKELLDSTIIYNRDFNYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|71422050|ref|XP_812008.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma cruzi
           strain CL Brener]
 gi|70876737|gb|EAN90157.1| ribonucleoside-diphosphate reductase large chain, putative
           [Trypanosoma cruzi]
          Length = 796

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/479 (63%), Positives = 381/479 (79%), Gaps = 2/479 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+T  GLSD +G+ F  LY+ YE E + ++ V A+ LWFAIL+SQ+ETG P+MLYKDACN
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERENRGVKTVQAQSLWFAILESQMETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+G IKCSNLCTEI+EYTS+DEVAVCNLASIAL  +++   + Y+  +L +V K
Sbjct: 423 RKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFVDKERRIYDHQRLYEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++ID N YPV E+R SN  +RPIGIGVQG+AD FI MRLPF C E+R LN+ I
Sbjct: 483 IVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFILMRLPFTCQEARTLNEDI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIYYGA+EAS E+A  +GPY  + GSP SQG LQ+D+W   P +  WDW ALK+++ K
Sbjct: 543 FETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQKPRSGRWDWDALKKRMMK 602

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL++ GL
Sbjct: 603 SGMRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGL 662

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ M++Q+I  NGS+Q+I GIP  LK+LY+ VWEI QK +++MA DRG FIDQSQSLN+
Sbjct: 663 WNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNL 722

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++     ++++SMHF  W+ GLKTGMYYLR+KPAA+AI+FT+D   +   +  +D R Q
Sbjct: 723 FLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  258 bits (660), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 160/205 (78%), Gaps = 2/205 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P +  WDW ALK+++ K G+RNSLL+APMPTAST+QILGNNE FEP+TSNI
Sbjct: 577 LQFDLWEQKPRSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN +L+ DL++ GLW++ M++Q+I  NGS+Q+I GIP  LK+LY+ VW
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +++MA DRG FIDQSQSLN+++     ++++SMHF  W+ GLKTGMYYLR+KPA
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQ 972
           A+AI+FT+D   +   +  +D R Q
Sbjct: 757 ADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  129 bits (324), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GLSD +G+ F  LY+ YE E
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERE 387



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQG+AD FI MRLPF C E+R LN+ IFETIYYGA+EAS E+A  +GPY  + 
Sbjct: 509 NRPIGIGVQGMADTFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFA 568

Query: 648 GSPVSQGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           GSP SQG LQ+D+W   P +  WDW ALK   +  G++
Sbjct: 569 GSPASQGQLQFDLWEQKPRSGRWDWDALKKRMMKSGMR 606



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 35/41 (85%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL+SQ+ETG P+MLYKDACNRKSNQ+N+ VI+
Sbjct: 394 VQAQSLWFAILESQMETGVPFMLYKDACNRKSNQKNVGVIK 434



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 38/65 (58%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ ++   LE    L+     +TG   P++SD+ +E++ ++ ++L   + YDRD  + 
Sbjct: 90  ALHKTTSASVLETFSILHKHKIHDTGRAAPLLSDEVWEVVQRHHEQLQRMVNYDRDMRFE 149

Query: 766 FFGFK 770
           FFG+K
Sbjct: 150 FFGYK 154


>gi|255721743|ref|XP_002545806.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
 gi|240136295|gb|EER35848.1| ribonucleoside-diphosphate reductase large chain [Candida
           tropicalis MYA-3404]
          Length = 818

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/476 (62%), Positives = 379/476 (79%), Gaps = 4/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV++D  W+LM 
Sbjct: 292 RPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADEYWTLMS 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G+ F +LY+KYE +G    ++ A KLW AIL+SQ ETG PYMLYKDACN
Sbjct: 352 PSEAPGLSDVYGDDFKELYEKYEKQG-LGTKIRAHKLWLAILESQTETGGPYMLYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT---YNFTKLKD 267
            KSNQ+NLGTIK SNLC EIVEY+S +E AVCNL S+AL  Y+  +D     ++F KL  
Sbjct: 411 EKSNQKNLGTIKSSNLCCEIVEYSSPEETAVCNLGSLALPTYLKTSDDEVIEFDFEKLHS 470

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K++ KNLNK+IDV  YPVE A  SN R+RPI +GVQGLADLF ++RLPF+   +R LN
Sbjct: 471 VTKVLAKNLNKVIDVTLYPVETAEYSNKRNRPIALGVQGLADLFAELRLPFESEAARKLN 530

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIY+ ALEAS E++ +DGPY+T++GSP S+GILQ+DMW  TP+ ++DW  LKE I
Sbjct: 531 IQIFETIYHAALEASVELSIQDGPYETFQGSPASEGILQFDMWNHTPSKMYDWNKLKESI 590

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRVLSGEFQVVN +L++DL++L
Sbjct: 591 QKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVNKYLIKDLMDL 650

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W+  M++++++ NGSIQ+I+ IP+ +K+LYKTVWEI QK ++DMAADRG FIDQSQS+
Sbjct: 651 GIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWEISQKVIIDMAADRGKFIDQSQSM 710

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           NI++ E  + K++S HF+ WK GLKTGMYYLRT+ A+ AIQFT+D T+   A   K
Sbjct: 711 NIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAASRAIQFTVDATEAEKAANEK 766



 Score =  276 bits (705), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 122/199 (61%), Positives = 163/199 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW  TP+ ++DW  LKE I K G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 568 LQFDMWNHTPSKMYDWNKLKESIQKFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN +L++DL++LG+W+  M++++++ NGSIQ+I+ IP+ +K+LYKTVWE
Sbjct: 628 NRRVLSGEFQVVNKYLIKDLMDLGIWNSAMRNKIMMENGSIQNIQSIPKDIKELYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRG FIDQSQS+NI++ E  + K++S HF+ WK GLKTGMYYLRT+ A+
Sbjct: 688 ISQKVIIDMAADRGKFIDQSQSMNIHLREPTFGKLTSCHFYAWKQGLKTGMYYLRTQAAS 747

Query: 949 NAIQFTIDKTKMANAMASK 967
            AIQFT+D T+   A   K
Sbjct: 748 RAIQFTVDATEAEKAANEK 766



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 71/87 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV++D  W+LM 
Sbjct: 292 RPGAFAIYIEPWHGDIFDILEMRKNHGSEELRTRDLFYGLWIPDLFMQRVKADEYWTLMS 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +G+ F +LY+KYE +GL
Sbjct: 352 PSEAPGLSDVYGDDFKELYEKYEKQGL 378



 Score =  125 bits (315), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 97/152 (63%), Gaps = 5/152 (3%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
            A    + N+   +GVQGLADLF ++RLPF+   +R LN QIFETIY+ ALEAS E++ +
Sbjct: 492 TAEYSNKRNRPIALGVQGLADLFAELRLPFESEAARKLNIQIFETIYHAALEASVELSIQ 551

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-T 698
           DGPY+T++GSP S+GILQ+DMW  TP+ ++DW  LK     +GL+   ++L + + T  T
Sbjct: 552 DGPYETFQGSPASEGILQFDMWNHTPSKMYDWNKLKESIQKFGLR--NSLLVAPMPTAST 609

Query: 699 PYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
             +L  + C     SN  N  V+   + +VNK
Sbjct: 610 SQILGFNECFEPYTSNLYNRRVLSGEFQVVNK 641



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW AIL+SQ ETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 386 KLWLAILESQTETGGPYMLYKDACNEKSNQKNLGTIK 422


>gi|448103839|ref|XP_004200138.1| Piso0_002711 [Millerozyma farinosa CBS 7064]
 gi|359381560|emb|CCE82019.1| Piso0_002711 [Millerozyma farinosa CBS 7064]
          Length = 856

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/478 (63%), Positives = 380/478 (79%), Gaps = 3/478 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF  LELKKN GKEE RARDLFYGLWIPD FM RV+ +  WSL  
Sbjct: 299 RPGAFAIYLEPWHSDIFSVLELKKNHGKEELRARDLFYGLWIPDLFMHRVKENLDWSLFS 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +T  GLS+ +GE+F+ LY+KYE E + I+ V A++LW AIL+SQIETG PYMLYKD+CN
Sbjct: 359 SDTAPGLSECYGEEFNALYEKYEKENRAIKVVKAQRLWHAILESQIETGGPYMLYKDSCN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
           +KSNQ+NLGTIK SNLC EI+EY+S +E AVCNL S+AL  +IN  +   T++F KL +V
Sbjct: 419 QKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFINAENDLVTFDFIKLHEV 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++ KNL+KIIDV  YP+  A+ SN +HRPI IGVQGLADLF+++RLPFD  ++++LN 
Sbjct: 479 TKVLAKNLDKIIDVTRYPIPSAQVSNKKHRPIAIGVQGLADLFLELRLPFDSQKAKILNI 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKEKI 387
           QIFETIY+ A+EASCE+A   GPY ++ GSP+SQG  Q+DMW   P+ L+ DW  LKEK+
Sbjct: 539 QIFETIYHAAVEASCELAEMSGPYDSFNGSPMSQGQFQFDMWNHKPSSLFSDWDELKEKV 598

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K GVRNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQVVN +LLRDL++L
Sbjct: 599 KKAGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLSGEFQVVNKYLLRDLIDL 658

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W+ +MK++++  NGSIQ I  IPQ +KDLYKTVWEI Q+ V++MAADRG FIDQSQSL
Sbjct: 659 GIWNPSMKNRILAENGSIQSINSIPQNIKDLYKTVWEISQRVVIEMAADRGKFIDQSQSL 718

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           NI+++     K++S HF+ WK GLKTGMYYLRT+ A  AIQFT+D  +   A  +++A
Sbjct: 719 NIHLSNPTLGKLTSCHFYAWKNGLKTGMYYLRTQAATRAIQFTVDMEEANKADFAQEA 776



 Score =  275 bits (703), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 126/189 (66%), Positives = 156/189 (82%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW   P+ L+ DW  LKEK+ K GVRNSLL+APMPTAST+QILG NE FEPYTSNI
Sbjct: 575 FQFDMWNHKPSSLFSDWDELKEKVKKAGVRNSLLVAPMPTASTSQILGFNECFEPYTSNI 634

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQVVN +LLRDL++LG+W+ +MK++++  NGSIQ I  IPQ +KDLYKTVW
Sbjct: 635 YNRRVLSGEFQVVNKYLLRDLIDLGIWNPSMKNRILAENGSIQSINSIPQNIKDLYKTVW 694

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ V++MAADRG FIDQSQSLNI+++     K++S HF+ WK GLKTGMYYLRT+ A
Sbjct: 695 EISQRVVIEMAADRGKFIDQSQSLNIHLSNPTLGKLTSCHFYAWKNGLKTGMYYLRTQAA 754

Query: 948 ANAIQFTID 956
             AIQFT+D
Sbjct: 755 TRAIQFTVD 763



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF  LELKKN GKEE RARDLFYGLWIPD FM RV+ +  WSL  
Sbjct: 299 RPGAFAIYLEPWHSDIFSVLELKKNHGKEELRARDLFYGLWIPDLFMHRVKENLDWSLFS 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
            +   GLS+ +GE+F+ LY+KYE E
Sbjct: 359 SDTAPGLSECYGEEFNALYEKYEKE 383



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 6/153 (3%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A +  + ++   IGVQGLADLF+++RLPFD  ++++LN QIFETIY+ A+EASCE+A  
Sbjct: 499 SAQVSNKKHRPIAIGVQGLADLFLELRLPFDSQKAKILNIQIFETIYHAAVEASCELAEM 558

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETG- 697
            GPY ++ GSP+SQG  Q+DMW   P+ L+ DW  LK      G++   ++L + + T  
Sbjct: 559 SGPYDSFNGSPMSQGQFQFDMWNHKPSSLFSDWDELKEKVKKAGVR--NSLLVAPMPTAS 616

Query: 698 TPYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
           T  +L  + C     SN  N  V+   + +VNK
Sbjct: 617 TSQILGFNECFEPYTSNIYNRRVLSGEFQVVNK 649



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 37/46 (80%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           + + +V   +LW AIL+SQIETG PYMLYKD+CN+KSNQ+NL  I+
Sbjct: 385 RAIKVVKAQRLWHAILESQIETGGPYMLYKDSCNQKSNQRNLGTIK 430


>gi|261334781|emb|CBH17775.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei gambiense DAL972]
          Length = 838

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/496 (61%), Positives = 392/496 (79%), Gaps = 16/496 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNT   LSD +G++F DLY++YE EG+ +R + A++LWF IL+SQ+ETG P+MLYKDACN
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS+DEVAVCNLASIAL  ++   D  +++  LK+V K
Sbjct: 423 FKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVK--DGAFDYVALKEVTK 480

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN++ID N YPV EAR SN+RHRP+GIGVQGLAD F  + LPF   E++ LN+QI
Sbjct: 481 VVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQI 540

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------GV------TPTDL 377
           FETIY+ A+EAS E+A +DGPY+T++GSP S+G LQ+D+W       G+      +   L
Sbjct: 541 FETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGL 600

Query: 378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437
           WDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VVN
Sbjct: 601 WDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVN 660

Query: 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 497
            HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAADR
Sbjct: 661 KHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADR 720

Query: 498 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           G +IDQSQSLN+++A    ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M 
Sbjct: 721 GRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAMK 780

Query: 558 NAMASKDARSQEEIQA 573
             +   D +S+EE+  
Sbjct: 781 E-LPKPDKQSKEEVHG 795



 Score =  258 bits (660), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 159/197 (80%), Gaps = 1/197 (0%)

Query: 781 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 840
           LWDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VV
Sbjct: 600 LWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVV 659

Query: 841 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
           N HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAAD
Sbjct: 660 NKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAAD 719

Query: 901 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
           RG +IDQSQSLN+++A    ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M
Sbjct: 720 RGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAM 779

Query: 961 ANAMASKDTRSQEEIQA 977
              +   D +S+EE+  
Sbjct: 780 KE-LPKPDKQSKEEVHG 795



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    LSD +G++F DLY++YE EG
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREG 388



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 70/105 (66%), Gaps = 13/105 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  + LPF   E++ LN+QIFETIY+ A+EAS E+A +DGPY+T++GSP S
Sbjct: 512 IGVQGLADAFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPAS 571

Query: 653 QGILQYDMW-------GV------TPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+W       G+      +   LWDW +LK   +  G++
Sbjct: 572 EGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMR 616



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D +G   TDL++      + +  +   +LWF IL+SQ+ETG P+MLYKDACN KSNQ+NL
Sbjct: 371 DCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNL 430

Query: 717 EVIE 720
             I+
Sbjct: 431 GTIK 434



 Score = 43.1 bits (100), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ + +  L+    L+  V++ T    P+IS++ ++I  K++  L   I Y+RDF++ 
Sbjct: 90  ALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFE 149

Query: 766 FFGFK 770
           +FG+K
Sbjct: 150 YFGYK 154


>gi|67598375|ref|XP_666214.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis TU502]
 gi|54657163|gb|EAL35983.1| ribonucleoside-diphosphate reductase large chain (ribonucleotide
           reductase R1 subunit) [Cryptosporidium hominis]
          Length = 526

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/509 (60%), Positives = 399/509 (78%), Gaps = 6/509 (1%)

Query: 95  FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTC 154
            AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMCP+ C
Sbjct: 18  IAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDEC 77

Query: 155 RGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSN 214
           RGL D WG+ F  LY++YE +G+  + + A+KLWF IL +QIETGTP++ YKDA N KSN
Sbjct: 78  RGLQDVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAANSKSN 137

Query: 215 QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTK 274
           Q+NLGTI  SNLCTEI+EYTSKDEVAVCNLASI L  +++  +KT++F KLK+V K++T+
Sbjct: 138 QKNLGTIVSSNLCTEIIEYTSKDEVAVCNLASIGLPKFVDKNNKTFDFDKLKEVTKVITR 197

Query: 275 NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETI 334
           NLNK+IDV +Y ++E +NSN+RHRP+GIG+QGLAD F+ +R+P++   ++ LNKQIFE I
Sbjct: 198 NLNKLIDVGYYSLKECKNSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKLNKQIFEVI 257

Query: 335 YYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAKHGVR 393
           YY AL+ASCE+A + GPY+TY GSP S+GILQ+DMWGVTP + L DW +LK++I+K+G+R
Sbjct: 258 YYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCDWDSLKDRISKYGIR 317

Query: 394 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDN 453
           NSLLI+PMPTAST+QILGNNESFEP+TSNIY RRVLSGEF VVN HLL DL+ELGLWDD 
Sbjct: 318 NSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGLWDDR 377

Query: 454 MKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE 513
           +K  +I NNGSIQ+I  IP+ +++LYKTVWEI QKTV+DMAADRG ++ QSQSLNI+M  
Sbjct: 378 LKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNIHMEN 437

Query: 514 INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQA 573
            N+AK+SSMHF+GWK GLKTG+YYLRT+ A   IQFT+D+  + +    KD+    + QA
Sbjct: 438 ANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSETKEKDSLETNKRQA 497

Query: 574 DQEQAMAAMIC-----RRDNKEDCIGVQG 597
            + +    + C        + E+C+   G
Sbjct: 498 LEPETQKLIACPLRPTNMKDDEECMMCSG 526



 Score =  273 bits (698), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 137/221 (61%), Positives = 175/221 (79%), Gaps = 1/221 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMWGVTP + L DW +LK++I+K+G+RNSLLI+PMPTAST+QILGNNESFEP+TSNI
Sbjct: 288 LQFDMWGVTPDSGLCDWDSLKDRISKYGIRNSLLISPMPTASTSQILGNNESFEPFTSNI 347

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL DL+ELGLWDD +K  +I NNGSIQ+I  IP+ +++LYKTVW
Sbjct: 348 YHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVW 407

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QKTV+DMAADRG ++ QSQSLNI+M   N+AK+SSMHF+GWK GLKTG+YYLRT+ A
Sbjct: 408 EIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSA 467

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
              IQFT+D+  + +    KD+    + QA + +    + C
Sbjct: 468 TRPIQFTVDQQLLKSETKEKDSLETNKRQALEPETQKLIAC 508



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 62/82 (75%)

Query: 5  FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNAC 64
           AIYLEPWH D+ +F+E++KN GKEE R RDLF  LW+PD FM RVE D  W+LMCP+ C
Sbjct: 18 IAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMCPDEC 77

Query: 65 RGLSDSWGEKFDDLYKKYEAEG 86
          RGL D WG+ F  LY++YE +G
Sbjct: 78 RGLQDVWGDDFKKLYEEYEKQG 99



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 72/93 (77%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P++   ++ LNKQIFE IYY AL+ASCE+A + GPY+TY GSP S
Sbjct: 225 IGIQGLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPAS 284

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +GILQ+DMWGVTP + L DW +LK     YG++
Sbjct: 285 KGILQFDMWGVTPDSGLCDWDSLKDRISKYGIR 317



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 29/36 (80%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLWF IL +QIETGTP++ YKDA N KSNQ+NL  I
Sbjct: 109 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTI 144


>gi|71755889|ref|XP_828859.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei]
 gi|70834245|gb|EAN79747.1| ribonucleoside-diphosphate reductase large chain [Trypanosoma
           brucei brucei strain 927/4 GUTat10.1]
          Length = 838

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/496 (61%), Positives = 391/496 (78%), Gaps = 16/496 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNT   LSD +G++F DLY++YE EG+ +R + A++LWF IL+SQ+ETG P+MLYKDACN
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS+DEVAVCNLASIAL  ++   D  +++  LK+V K
Sbjct: 423 FKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVK--DGAFDYVALKEVTK 480

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN++ID N YPV EAR SN+RHRP+GIGVQGLAD F  + LPF   E++ LN+QI
Sbjct: 481 VVTRNLNRVIDRNHYPVREARYSNLRHRPVGIGVQGLADTFALLSLPFAHPEAKKLNRQI 540

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------GV------TPTDL 377
           FETIY+ A+EAS E+A +DGPY+T++GSP S+G LQ+D+W       G+      +   L
Sbjct: 541 FETIYFAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGL 600

Query: 378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437
           WDW +LKE++ K G+RNSLL+APMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VVN
Sbjct: 601 WDWDSLKERVVKVGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVN 660

Query: 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 497
            HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAADR
Sbjct: 661 KHLVKELIRLQLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADR 720

Query: 498 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           G +IDQSQSLN+++     ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M 
Sbjct: 721 GRYIDQSQSLNLFLGTPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAMK 780

Query: 558 NAMASKDARSQEEIQA 573
             +   D +S+EE+  
Sbjct: 781 E-LPKPDKQSKEEVHG 795



 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 158/197 (80%), Gaps = 1/197 (0%)

Query: 781 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 840
           LWDW +LKE++ K G+RNSLL+APMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VV
Sbjct: 600 LWDWDSLKERVVKVGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVV 659

Query: 841 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
           N HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAAD
Sbjct: 660 NKHLVKELIRLQLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAAD 719

Query: 901 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
           RG +IDQSQSLN+++     ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M
Sbjct: 720 RGRYIDQSQSLNLFLGTPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAM 779

Query: 961 ANAMASKDTRSQEEIQA 977
              +   D +S+EE+  
Sbjct: 780 KE-LPKPDKQSKEEVHG 795



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    LSD +G++F DLY++YE EG
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREG 388



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 70/105 (66%), Gaps = 13/105 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  + LPF   E++ LN+QIFETIY+ A+EAS E+A +DGPY+T++GSP S
Sbjct: 512 IGVQGLADTFALLSLPFAHPEAKKLNRQIFETIYFAAVEASTELAEKDGPYETFKGSPAS 571

Query: 653 QGILQYDMW-------GV------TPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+W       G+      +   LWDW +LK   +  G++
Sbjct: 572 EGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMR 616



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D +G   TDL++      + +  +   +LWF IL+SQ+ETG P+MLYKDACN KSNQ+NL
Sbjct: 371 DCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNL 430

Query: 717 EVIE 720
             I+
Sbjct: 431 GTIK 434



 Score = 43.1 bits (100), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ + +  L+    L+  V++ T    P+IS++ ++I  K++  L   I Y+RDF++ 
Sbjct: 90  ALHKTTTESVLDSFRVLHEHVSQATRRHAPLISEELWDIANKHSAALQQIINYERDFDFE 149

Query: 766 FFGFK 770
           +FG+K
Sbjct: 150 YFGYK 154


>gi|384097000|ref|ZP_09998121.1| ribonucleoside-diphosphate reductase, large subunit [Imtechella
           halotolerans K1]
 gi|383836968|gb|EID76368.1| ribonucleoside-diphosphate reductase, large subunit [Imtechella
           halotolerans K1]
          Length = 793

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/494 (60%), Positives = 390/494 (78%), Gaps = 5/494 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI DFL+LKKN GKEE RARDLFY +WIPD FM+RV+ D++W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIMDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVQEDSRWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D   + F++LY +YEAEGK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVHSDSFEELYLRYEAEGKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLAS+AL M++   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASVALPMFVKNGE--FDHKELFKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLN++ID N+YPV EA+NSN RHRP+G+GVQGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 RVTRNLNRVIDRNYYPVIEAQNSNFRHRPVGLGVQGLADTFIMLRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T++GSP+SQG  Q++MWG+   +L   WDWA L++ +
Sbjct: 530 FETMYFAAVTASMELAKEEGPYDTFKGSPISQGEFQHNMWGIKDEELSGRWDWAKLRKDV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 IKNGVRNSLLMAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVAL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++  NGSIQ+I+ IP ++K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRANGSIQEIDIIPHEIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M     AK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+ K +     A     +
Sbjct: 710 NLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTVQKKQETKPTAESQPLT 769

Query: 568 QEEIQADQEQAMAA 581
            +E++A   QA A+
Sbjct: 770 SDELKAMIAQAKAS 783



 Score =  272 bits (695), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 130/232 (56%), Positives = 175/232 (75%), Gaps = 9/232 (3%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+++MWG+   +L   WDWA L++ + K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNMWGIKDEELSGRWDWAKLRKDVIKNGVRNSLLMAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW++++K +++  NGSIQ+I+ IP ++K+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVALGLWNEDLKQEIMRANGSIQEIDIIPHEIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M     AK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGATMAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
            A +AI+FT+ K +      +K T   + + +D+ +AM A   +    +DCL
Sbjct: 744 SAVDAIKFTVQKKQ-----ETKPTAESQPLTSDELKAMIAQ-AKASEGDDCL 789



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI DFL+LKKN GKEE RARDLFY +WIPD FM+RV+ D++W+LMC
Sbjct: 292 RKGSFAIYIEPWHADIMDFLDLKKNHGKEEMRARDLFYAMWIPDLFMKRVQEDSRWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D   + F++LY +YEAEG
Sbjct: 352 PNECPGLYDVHSDSFEELYLRYEAEG 377



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF  +E++ LN++IFET+Y+ A+ AS E+A  +GPY T++GSP+S
Sbjct: 501 LGVQGLADTFIMLRMPFTSDEAKKLNQEIFETMYFAAVTASMELAKEEGPYDTFKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  Q++MWG+   +L   WDWA L+   +  G++
Sbjct: 561 QGEFQHNMWGIKDEELSGRWDWAKLRKDVIKNGVR 595



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   E + +
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYARLAARISVSN--------LHKNTKKSFSETMND 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LYN VN  T    P+ISD+ ++II  NAD L+S IIY+RDF Y++FGFK
Sbjct: 100 LYNYVNPRTEQAAPLISDEVHDIIQANADFLDSTIIYNRDFGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|319953270|ref|YP_004164537.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
           algicola DSM 14237]
 gi|319421930|gb|ADV49039.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           algicola DSM 14237]
          Length = 825

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/468 (64%), Positives = 377/468 (80%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI++FL+LKKN GKEE RARDLFY +WIPD FMRRVE++ +W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L     E F+ +Y KYEAE K  + V AR LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPDLFKHHSEVFETMYLKYEAENKGRKTVKARDLWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M+I   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFIKNGE--FDHKELFRVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +RLPF  + ++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKALNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY +YEGSP+S+G  QY++WG+   +L   WDW  L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSSYEGSPISEGEFQYNLWGIKDEELSGRWDWDKLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 KKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVHL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +L+  NGSIQ I+ IPQ +K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNESLKQELMRANGSIQHIDIIPQDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           N++M   N++K++SMHF+ WK GLKTGMYYLRTK A +AI+FT+D TK
Sbjct: 710 NLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLDNTK 757



 Score =  273 bits (697), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 160/194 (82%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   +L   WDW  L++++ K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQYNLWGIKDEELSGRWDWDKLRKEVKKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV LGLW++++K +L+  NGSIQ I+ IPQ +K+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVHLGLWNESLKQELMRANGSIQHIDIIPQDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   N++K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGANFSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK 959
            A +AI+FT+D TK
Sbjct: 744 SAVDAIKFTLDNTK 757



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI++FL+LKKN GKEE RARDLFY +WIPD FMRRVE++ +W+LMC
Sbjct: 292 RKGSFAIYVEPWHADIYEFLDLKKNHGKEEMRARDLFYAMWIPDLFMRRVEANEEWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C  L     E F+ +Y KYEAE
Sbjct: 352 PNECPDLFKHHSEVFETMYLKYEAE 376



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/86 (51%), Positives = 64/86 (74%), Gaps = 3/86 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  + ++ LN++IFET+Y+ A+ AS E+A  +GPY +YEGSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDAAKALNQEIFETLYFAAVTASMEMAKEEGPYSSYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALK 675
           +G  QY++WG+   +L   WDW  L+
Sbjct: 561 EGEFQYNLWGIKDEELSGRWDWDKLR 586



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 69/120 (57%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           VS  +++    GVT ++L + AA ++ A +      FA L ++I             ++ 
Sbjct: 38  VSMRVIEGLYDGVTTSELDNLAA-EISATMTTTHPDFAKLAARISVSN--------LHKN 88

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   + +++LY  VN   G ++P++SD+ +++I +NA  L+S IIY+RDF Y++FGFK
Sbjct: 89  TKKSFADTMKDLYEYVNPRNGKKSPLLSDEVFKVISENAAFLDSTIIYNRDFGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 388 LWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|407853283|gb|EKG06338.1| hypothetical protein TCSYLVIO_002561 [Trypanosoma cruzi]
          Length = 796

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/479 (63%), Positives = 380/479 (79%), Gaps = 2/479 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+T  GLSD +G+ F  LY+ YE E + ++ V A+ LWFAIL+ Q+ETG P+MLYKDACN
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERENRGVKTVQAQSLWFAILELQMETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+N+G IKCSNLCTEI+EYTS+DEVAVCNLASIAL  +++   K Y+  +L +V K
Sbjct: 423 RKSNQKNVGVIKCSNLCTEIIEYTSRDEVAVCNLASIALPRFVDKERKIYDHQRLYEVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++ID N YPV E+R SN  +RPIGIGVQG+AD FI MRLPF C E+R LN+ I
Sbjct: 483 IVTKNLNRVIDRNHYPVPESRRSNELNRPIGIGVQGMADTFILMRLPFTCQEARTLNEDI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIYYGA+EAS E+A  +GPY  + GSP SQG LQ+D+W   P +  WDW ALK+++ K
Sbjct: 543 FETIYYGAVEASVELAEVEGPYARFAGSPASQGQLQFDLWEQKPRSGRWDWDALKKRMMK 602

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL++ GL
Sbjct: 603 SGMRNSLLLAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIKRGL 662

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ M++Q+I  NGS+Q+I GIP  LK+LY+ VWEI QK +++MA DRG FIDQSQSLN+
Sbjct: 663 WNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVWEIRQKDLIEMAVDRGKFIDQSQSLNL 722

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++     ++++SMHF  W+ GLKTGMYYLR+KPAA+AI+FT+D   +   +  +D R Q
Sbjct: 723 FLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPAADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  259 bits (661), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 160/205 (78%), Gaps = 2/205 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P +  WDW ALK+++ K G+RNSLL+APMPTAST+QILGNNE FEP+TSNI
Sbjct: 577 LQFDLWEQKPRSGRWDWDALKKRMMKSGMRNSLLLAPMPTASTSQILGNNECFEPFTSNI 636

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN +L+ DL++ GLW++ M++Q+I  NGS+Q+I GIP  LK+LY+ VW
Sbjct: 637 YVRRVLSGEFPVVNKYLVMDLIKRGLWNEEMRNQIIAYNGSVQNIRGIPNDLKELYRVVW 696

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +++MA DRG FIDQSQSLN+++     ++++SMHF  W+ GLKTGMYYLR+KPA
Sbjct: 697 EIRQKDLIEMAVDRGKFIDQSQSLNLFLENPTSSQLTSMHFFAWERGLKTGMYYLRSKPA 756

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQ 972
           A+AI+FT+D   +   +  +D R Q
Sbjct: 757 ADAIKFTVDPNTL-KGLVKEDDRKQ 780



 Score =  129 bits (324), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWHGDIF+FL LKKNTGKE+ RARDLFY LWIPD FM RV+S  +W+LM 
Sbjct: 303 RKGAFAIYLEPWHGDIFNFLLLKKNTGKEDHRARDLFYALWIPDLFMERVKSGGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GLSD +G+ F  LY+ YE E
Sbjct: 363 PHTAPGLSDCYGDDFKKLYEGYERE 387



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQG+AD FI MRLPF C E+R LN+ IFETIYYGA+EAS E+A  +GPY  + 
Sbjct: 509 NRPIGIGVQGMADTFILMRLPFTCQEARTLNEDIFETIYYGAVEASVELAEVEGPYARFA 568

Query: 648 GSPVSQGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           GSP SQG LQ+D+W   P +  WDW ALK   +  G++
Sbjct: 569 GSPASQGQLQFDLWEQKPRSGRWDWDALKKRMMKSGMR 606



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V    LWFAIL+ Q+ETG P+MLYKDACNRKSNQ+N+ VI+
Sbjct: 394 VQAQSLWFAILELQMETGVPFMLYKDACNRKSNQKNVGVIK 434



 Score = 46.6 bits (109), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 38/65 (58%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ ++   LE    L+     +TG   P++SD+ +EI+ ++ ++L   + YDRD  + 
Sbjct: 90  ALHKTTSASVLETFSILHKHKIHDTGRAAPLLSDEVWEIVQRHHEQLQRMVNYDRDMRFE 149

Query: 766 FFGFK 770
           FFG+K
Sbjct: 150 FFGYK 154


>gi|126662514|ref|ZP_01733513.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
 gi|126625893|gb|EAZ96582.1| ribonucleoside diphosphate reductase, alpha subunit [Flavobacteria
           bacterium BAL38]
          Length = 810

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/517 (58%), Positives = 399/517 (77%), Gaps = 18/517 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLE WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RVE DA W+LMC
Sbjct: 292 RKGSFAIYLETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L + +G++F+ LY  YEA+GK  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPDLDNVYGDEFEALYTSYEAKGKGRKTIRARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DE+AVCNLASI+L M++   +  +N   L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEIAVCNLASISLPMFVE--NGKFNHELLFTVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRP+G+GVQGLAD FI MRLPF  +E++ +N++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPVGLGVQGLADAFIMMRLPFTSDEAKKVNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+EGSP+S+G  Q+++W +   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSTFEGSPISKGEFQHNLWNIKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
             +GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV+ 
Sbjct: 590 MANGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVDR 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++ +K +++ +NGS+Q I+ IP  LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNETLKQEIMRHNGSVQHIDRIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK---D 564
           N++M + NYAK++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K+A  +  K   +
Sbjct: 710 NLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDKVAAPIEVKPQTE 769

Query: 565 ARSQE---------EIQADQEQAMAAMICRRDNKEDC 592
            +  E         E+ A++ +AM  M  R    EDC
Sbjct: 770 VKKVEAIAVLEEPSEMTAEEYRAMVEM-ARNAGPEDC 805



 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/243 (53%), Positives = 180/243 (74%), Gaps = 16/243 (6%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++W +   +L   WDWA+L++++  +GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQHNLWNIKDEELSGRWDWASLRKEVMANGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+ GLW++ +K +++ +NGS+Q I+ IP  LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLHDLVDRGLWNETLKQEIMRHNGSVQHIDRIPADLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M + NYAK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMQDANYAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASK---DTRSQE---------EIQADQEQAMAAMICRRDNK 993
            A +AI+FT++  K+A  +  K   + +  E         E+ A++ +AM  M  R    
Sbjct: 744 AAVDAIKFTLNNDKVAAPIEVKPQTEVKKVEAIAVLEEPSEMTAEEYRAMVEM-ARNAGP 802

Query: 994 EDC 996
           EDC
Sbjct: 803 EDC 805



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLE WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RVE DA W+LMC
Sbjct: 292 RKGSFAIYLETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEEDANWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L + +G++F+ LY  YEA+G
Sbjct: 352 PNECPDLDNVYGDEFEALYTSYEAKG 377



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 70/95 (73%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MRLPF  +E++ +N++IFET+Y+ A+ AS E+A  +GPY T+EGSP+S
Sbjct: 501 LGVQGLADAFIMMRLPFTSDEAKKVNQEIFETLYFAAVTASMEMAKEEGPYSTFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+++W +   +L   WDWA+L+   +  G++
Sbjct: 561 KGEFQHNLWNIKDEELSGRWDWASLRKEVMANGVR 595



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 44/63 (69%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +N+   E + E+Y+ VN  T    P+ISD+ YE+I  NA+ L+S IIY RDFNY++F
Sbjct: 86  HKNTNKSFSETMNEMYHYVNPRTNQEAPLISDEVYEVIKANAEFLDSHIIYTRDFNYDYF 145

Query: 768 GFK 770
           GFK
Sbjct: 146 GFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|366989059|ref|XP_003674297.1| hypothetical protein NCAS_0A13590 [Naumovozyma castellii CBS 4309]
 gi|342300160|emb|CCC67917.1| hypothetical protein NCAS_0A13590 [Naumovozyma castellii CBS 4309]
          Length = 860

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 293/479 (61%), Positives = 381/479 (79%), Gaps = 6/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LW+PD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGQWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D +G++F++LY +YE EG+  + + A+KLW+AIL++Q ETGTP+++YKDACN
Sbjct: 353 PSIAPGLDDVYGDEFEELYTRYEKEGRG-KTIKAQKLWYAILEAQTETGTPFVIYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RK+NQ NLG IK SNLC EIVEY+S DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKTNQSNLGVIKSSNLCCEIVEYSSPDETAVCNLASVALPAFIETSEDGKTSTYNFEKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++ K+VT+NLN++ID N+YPV EA  SN+RHRPI +GVQGLAD ++ +RLPF+  E+ +L
Sbjct: 472 EITKVVTRNLNRVIDNNYYPVPEAERSNVRHRPIALGVQGLADTYMMLRLPFESEEATIL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFET+Y+ +LE+SCE+A ++GPY+T+EG P S+GILQ DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETMYHASLESSCELAQKEGPYETWEGCPASKGILQMDMWNAEPFGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + K+G+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 VVKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  +I  NGSIQ++  +P +LK LYKT+WEI QK ++DMAADR  +IDQS S
Sbjct: 652 LGIWDDGMKQHIITQNGSIQNLPNVPDELKSLYKTIWEISQKKIIDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ K+A+  A   A
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-KVADQAAQNIA 769



 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 155/197 (78%), Gaps = 1/197 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L++ + K+G+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQMDMWNAEPFGMWDWDTLRKDVVKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD MK  +I  NGSIQ++  +P +LK LYKT+WE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDGMKQHIITQNGSIQNLPNVPDELKSLYKTIWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKKIIDMAADRSIYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKTKMANAMA 965
            AIQFTID+ K+A+  A
Sbjct: 750 AAIQFTIDQ-KVADQAA 765



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LW+PD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWVPDLFMKRVEENGQWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL D +G++F++LY +YE EG
Sbjct: 353 PSIAPGLDDVYGDEFEELYTRYEKEG 378



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E+ +LNKQIFET+Y+ +LE+SCE+A ++GPY+T+EG P 
Sbjct: 506 ALGVQGLADTYMMLRLPFESEEATILNKQIFETMYHASLESSCELAQKEGPYETWEGCPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ DMW   P  +WDW  L+   + YGL+
Sbjct: 566 SKGILQMDMWNAEPFGMWDWDTLRKDVVKYGLR 598



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++             +++
Sbjct: 39  VTQRIINGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VI +L++ VN   G  +PMIS K Y+I+MKN D LNS I+YDRDF++N+FGFK
Sbjct: 90  TTKQFSQVIYDLHHYVNPANGIHSPMISKKVYDIVMKNKDLLNSTIVYDRDFSFNYFGFK 149



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+++YKDACNRK+NQ NL VI+
Sbjct: 387 KLWYAILEAQTETGTPFVIYKDACNRKTNQSNLGVIK 423


>gi|365961082|ref|YP_004942649.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           columnare ATCC 49512]
 gi|365737763|gb|AEW86856.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           columnare ATCC 49512]
          Length = 803

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/510 (59%), Positives = 398/510 (78%), Gaps = 11/510 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DI DFL+LKKN GKEE RARDLFY +W  D FM+RVESD +W+LMC
Sbjct: 292 RKGSFAIYIETWHADIMDFLDLKKNHGKEEMRARDLFYAMWTSDLFMKRVESDDKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY KYE E +  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGDEFEALYTKYENEARGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DE+AVCNLAS++L M+++  +  +N   L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSADEIAVCNLASLSLPMFVD--EGKFNHELLYKVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +R+PF  ++++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRMPFTSDDAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+E S E+A  +GPY T++GSP+S+G  QY++WGVT  +L   WDWA+L++++
Sbjct: 530 FETMYFAAVETSMEMAKEEGPYSTFKGSPISEGQFQYNLWGVTDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            ++GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV+ 
Sbjct: 590 IEYGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVKC 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +++ +NGS+Q+I+ IPQ LKDLYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNEDLKQEIMRHNGSVQNIDRIPQDLKDLYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M    ++K++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K       +  + 
Sbjct: 710 NLFMEGATFSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNEKKTEPTI-ESPKE 768

Query: 568 QEEIQADQEQA---MAAMICRRDNK--EDC 592
            E +  + E A     AMI R  N   EDC
Sbjct: 769 LELVAPEGEMAAEEFRAMIERSRNAEPEDC 798



 Score =  274 bits (701), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/236 (56%), Positives = 179/236 (75%), Gaps = 9/236 (3%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WGVT  +L   WDWA+L++++ ++GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGVTDEELSGRWDWASLRKEVIEYGVRNSLLMAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+ GLW++++K +++ +NGS+Q+I+ IPQ LKDLYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVKCGLWNEDLKQEIMRHNGSVQNIDRIPQDLKDLYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M    ++K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMEGATFSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA---MAAMICRRDNK--EDC 996
            A +AI+FT++  K       +  +  E +  + E A     AMI R  N   EDC
Sbjct: 744 AAVDAIKFTLNNEKKTEPTI-ESPKELELVAPEGEMAAEEFRAMIERSRNAEPEDC 798



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DI DFL+LKKN GKEE RARDLFY +W  D FM+RVESD +W+LMC
Sbjct: 292 RKGSFAIYIETWHADIMDFLDLKKNHGKEEMRARDLFYAMWTSDLFMKRVESDDKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +G++F+ LY KYE E 
Sbjct: 352 PNECPGLYDVYGDEFEALYTKYENEA 377



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +R+PF  ++++ LN++IFET+Y+ A+E S E+A  +GPY T++GSP+S
Sbjct: 501 LGVQGLADAFIMLRMPFTSDDAKKLNQEIFETMYFAAVETSMEMAKEEGPYSTFKGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  QY++WGVT  +L   WDWA+L+   + YG++
Sbjct: 561 EGQFQYNLWGVTDEELSGRWDWASLRKEVIEYGVR 595



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + ++++ V+  TG   P+ISD+ ++IIM+N+  L+S IIY+RDFNY++FGFK
Sbjct: 95  ETMNDMFHYVSPRTGKDAPLISDEVHKIIMENSAFLDSHIIYNRDFNYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|3914639|sp|O15909.1|RIR1_TRYBB RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|2411477|gb|AAB70704.1| ribonucleotide reductase large subunit [Trypanosoma brucei]
          Length = 838

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/496 (61%), Positives = 391/496 (78%), Gaps = 16/496 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNT   LSD +G++F DLY++YE EG+ +R + A++LWF IL+SQ+ETG P+MLYKDACN
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS+DEVAVCNLASIAL  ++   D  +++  LK+V K
Sbjct: 423 FKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVK--DGAFDYVALKEVTK 480

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLN++ID N YPV EAR SN+RHRP+GIGVQGLAD F  + LPF   E++ LN+QI
Sbjct: 481 VVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQI 540

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------GV------TPTDL 377
           FETIY  A+EAS E+A +DGPY+T++GSP S+G LQ+D+W       G+      +   L
Sbjct: 541 FETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGL 600

Query: 378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437
           WDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VVN
Sbjct: 601 WDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVN 660

Query: 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 497
            HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAADR
Sbjct: 661 KHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADR 720

Query: 498 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           G +IDQSQSLN+++A    ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M 
Sbjct: 721 GRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAMK 780

Query: 558 NAMASKDARSQEEIQA 573
             +   D +S+EE+  
Sbjct: 781 E-LPKPDKQSKEEVHG 795



 Score =  258 bits (660), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 117/197 (59%), Positives = 159/197 (80%), Gaps = 1/197 (0%)

Query: 781 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 840
           LWDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VV
Sbjct: 600 LWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVV 659

Query: 841 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
           N HL+++L+ L LW+D+M+ ++I  NGS+  I+ IP+++++LYK VWEI QK ++DMAAD
Sbjct: 660 NKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAAD 719

Query: 901 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
           RG +IDQSQSLN+++A    ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D   M
Sbjct: 720 RGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAM 779

Query: 961 ANAMASKDTRSQEEIQA 977
              +   D +S+EE+  
Sbjct: 780 KE-LPKPDKQSKEEVHG 795



 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES   W+LM 
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    LSD +G++F DLY++YE EG
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREG 388



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 13/105 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  + LPF   E++ LN+QIFETIY  A+EAS E+A +DGPY+T++GSP S
Sbjct: 512 IGVQGLADAFALLSLPFAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPAS 571

Query: 653 QGILQYDMW-------GV------TPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+W       G+      +   LWDW +LK   +  G++
Sbjct: 572 EGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMR 616



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D +G   TDL++      + +  +   +LWF IL+SQ+ETG P+MLYKDACN KSNQ+NL
Sbjct: 371 DCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNL 430

Query: 717 EVIE 720
             I+
Sbjct: 431 GTIK 434



 Score = 43.1 bits (100), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 39/65 (60%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ + +  L+    L+  V++ T    P+IS++ ++I  K++  L   I Y+RDF++ 
Sbjct: 90  ALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFE 149

Query: 766 FFGFK 770
           +FG+K
Sbjct: 150 YFGYK 154


>gi|381187135|ref|ZP_09894700.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Flavobacterium frigoris PS1]
 gi|379650745|gb|EIA09315.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Flavobacterium frigoris PS1]
          Length = 808

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/470 (62%), Positives = 381/470 (81%), Gaps = 6/470 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIFDFL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDGNWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ +Y  YE  GK  + + A +LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGEEFEKMYTDYEKAGKGRKTIKAHELWEKILESQIETGTPYMLYKDAVN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLAS++L M+++  +  ++   L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASLSLPMFVD--NGKFDHESLYTVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+EA NSNMRHRPIG+GVQGLAD FI +RLPF  + ++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEAENSNMRHRPIGLGVQGLADAFIMLRLPFTSDAAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY +++GSP+SQG  QY++WG+   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASMEMAKEEGPYSSFKGSPMSQGEFQYNLWGMKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVEL
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLHDLVEL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++ MK +L+ NNGS+QD++ IPQ LK+LYKTVWE+  K ++DM+  RG F+DQSQSL
Sbjct: 650 GLWNETMKQELMRNNGSVQDLD-IPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQSQSL 708

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           N++M   NY+K++SMHF+ W+ GLKTGMYYLRTK A +AI+FT++  K A
Sbjct: 709 NLFMQNANYSKLTSMHFYAWQSGLKTGMYYLRTKAAVDAIKFTLNNDKKA 758



 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/196 (64%), Positives = 165/196 (84%), Gaps = 4/196 (2%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   +L   WDWA+L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGMKDEELSGRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVELGLW++ MK +L+ NNGS+QD++ IPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLHDLVELGLWNETMKQELMRNNGSVQDLD-IPQDLKELYKT 682

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG F+DQSQSLN++M   NY+K++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 683 VWEMSMKDIIDMSRQRGYFVDQSQSLNLFMQNANYSKLTSMHFYAWQSGLKTGMYYLRTK 742

Query: 946 PAANAIQFTIDKTKMA 961
            A +AI+FT++  K A
Sbjct: 743 AAVDAIKFTLNNDKKA 758



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIFDFL+LKKNTGKEE RARDLF+ +W  D FM+RV+ D  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFDFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVQEDGNWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ +Y  YE  G
Sbjct: 352 PNECPGLYDVYGEEFEKMYTDYEKAG 377



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  + ++ LN++IFET+Y+ A+ AS E+A  +GPY +++GSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDAAKKLNQEIFETLYFAAVTASMEMAKEEGPYSSFKGSPMS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY++WG+   +L   WDWA+L+   + +G++
Sbjct: 561 QGEFQYNLWGMKDEELSGRWDWASLRKEVMEHGVR 595



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAVNRKSNQKNLGTI 422



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E + E+Y+ VN   G   P++S++ +++I +NA+ L+S IIY+RDFNY++FGFK
Sbjct: 95  ETMNEMYHYVNPRNGQDAPLLSEEVHKVIQENAEFLDSHIIYNRDFNYDYFGFK 148


>gi|325190738|emb|CCA25231.1| ribonucleosidediphosphate reductase large subunit p [Albugo
           laibachii Nc14]
          Length = 782

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/495 (60%), Positives = 395/495 (79%), Gaps = 8/495 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DIF+FLEL+KN G E  RARDLFY LWIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYALWIPDLFMKRVEDNQEWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN    L ++WG +FD LY KYE+     + V A++LWFAILDSQIETGTPYMLYKDACN
Sbjct: 353 PNEAPRLYETWGNEFDALYLKYESMNIARKTVKAQQLWFAILDSQIETGTPYMLYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTI+ SNLC EI+EY+   EVAVCNLAS+AL+ ++    K + FTKL ++ K
Sbjct: 413 RKSNQQNLGTIRSSNLCCEIIEYSDSKEVAVCNLASVALSKFV--YQKEFQFTKLYEITK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLNKIID+N+YP+ EA++SN RHRPIGIGVQGLAD F+ M LPF+   +R LNK+I
Sbjct: 471 IVTKNLNKIIDINYYPIPEAQSSNQRHRPIGIGVQGLADTFLLMGLPFESKAARDLNKEI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FET+Y+ A+EAS E+A   GPY++Y GSPVS+G  Q+DMW VTP +  WDW +LKE++A 
Sbjct: 531 FETMYFAAMEASMELARELGPYESYSGSPVSKGTFQFDMWQVTPDSGRWDWKSLKEQVAA 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+APMPTASTAQILGN ES EP+TSN+++RRVL+GEF +VN +L+ +L+E+ L
Sbjct: 591 HGIRNSLLLAPMPTASTAQILGNCESIEPFTSNMFNRRVLAGEFTIVNKYLMEELIEMNL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W  ++++Q++ + GS+Q+I  IP  +K+ YKTVWEI QK++LDMAADRGA+I QSQSLNI
Sbjct: 651 WTSDVRNQILRDRGSVQNIVEIPPNVKEKYKTVWEIKQKSILDMAADRGAYICQSQSLNI 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           ++A+   +K++SMHF+ WK GLKTGMYYLRT+P A+AIQFT+D+  + ++  +K +++Q+
Sbjct: 711 HIADPTVSKLTSMHFYAWKKGLKTGMYYLRTRPRADAIQFTVDQKSLDDSALAKLSQTQD 770

Query: 570 EIQADQEQAMAAMIC 584
               D+E+    ++C
Sbjct: 771 ---VDEEE--ECLVC 780



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 122/221 (55%), Positives = 178/221 (80%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++DMW VTP +  WDW +LKE++A HG+RNSLL+APMPTASTAQILGN ES EP+TSN+
Sbjct: 565 FQFDMWQVTPDSGRWDWKSLKEQVAAHGIRNSLLLAPMPTASTAQILGNCESIEPFTSNM 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           ++RRVL+GEF +VN +L+ +L+E+ LW  ++++Q++ + GS+Q+I  IP  +K+ YKTVW
Sbjct: 625 FNRRVLAGEFTIVNKYLMEELIEMNLWTSDVRNQILRDRGSVQNIVEIPPNVKEKYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK++LDMAADRGA+I QSQSLNI++A+   +K++SMHF+ WK GLKTGMYYLRT+P 
Sbjct: 685 EIKQKSILDMAADRGAYICQSQSLNIHIADPTVSKLTSMHFYAWKKGLKTGMYYLRTRPR 744

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           A+AIQFT+D+  + ++  +K +++Q+    D+E+    ++C
Sbjct: 745 ADAIQFTVDQKSLDDSALAKLSQTQD---VDEEE--ECLVC 780



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DIF+FLEL+KN G E  RARDLFY LWIPD FM+RVE + +WSL C
Sbjct: 293 RKGSFAMYLEPWHADIFEFLELRKNHGNELHRARDLFYALWIPDLFMKRVEDNQEWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L ++WG +FD LY KYE+
Sbjct: 353 PNEAPRLYETWGNEFDALYLKYES 376



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ M LPF+   +R LNK+IFET+Y+ A+EAS E+A   GPY++Y GSPVS
Sbjct: 502 IGVQGLADTFLLMGLPFESKAARDLNKEIFETMYFAAMEASMELARELGPYESYSGSPVS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G  Q+DMW VTP +  WDW +LK     +G++
Sbjct: 562 KGTFQFDMWQVTPDSGRWDWKSLKEQVAAHGIR 594



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 35/40 (87%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   +LWFAILDSQIETGTPYMLYKDACNRKSNQQNL  I
Sbjct: 384 VKAQQLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTI 423



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 41/63 (65%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++ +N+   E I+  Y   +  T    P+I++  Y +++KN + LNSAII DRDF+Y++F
Sbjct: 87  HKNTNKVFSENIQLFYENKHDTTKVPAPLIAEDVYRVVIKNKEALNSAIIGDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149


>gi|66810005|ref|XP_638726.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
 gi|74854399|sp|Q54Q71.1|RIR1_DICDI RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|60467345|gb|EAL65376.1| ribonucleotide reductase large subunit [Dictyostelium discoideum
           AX4]
          Length = 870

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/471 (63%), Positives = 377/471 (80%), Gaps = 9/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F+F++LKKNTGKEE RARDLFY LW+ D FM RVE +  W+L C
Sbjct: 311 RKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFC 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
           PN   GL+++  E+   LY KYEA     R+V  A++LWFAI++SQ+ETGTP++LYKDAC
Sbjct: 371 PNEAPGLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDAC 430

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-------NPADKTYNF 262
           N KSNQ+NLGTI  SNLCTEI++YTS DE+AVCNLASIAL  ++       +P +K ++ 
Sbjct: 431 NAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQKVGSTDPKEKEFDH 490

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
             L ++ K++T NLN IID N+YPV EA+ SN+RHRPIGIG+QGLAD+FI+MR+PFD   
Sbjct: 491 QFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRMPFDSVA 550

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
           +  LN +I ETIY+ AL AS E+A RDG Y++++GSP S+GILQ+DMW VTP+  W+WA 
Sbjct: 551 AAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSSRWNWAE 610

Query: 383 LKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
           LK+ I  K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEF +VN  LL
Sbjct: 611 LKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLL 670

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
            DL+ELG+W   MK+Q++   GSIQ I GIP  LK+LYKTVWEI Q+T++DMAADRGAFI
Sbjct: 671 EDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFI 730

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           DQSQS N+++AE  +AK++SMHF+ WK GLKTGMYYLRT+PAA+AIQFT+D
Sbjct: 731 DQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVD 781



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/189 (69%), Positives = 159/189 (84%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW VTP+  W+WA LK+ I  K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNI
Sbjct: 593 LQFDMWNVTPSSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNI 652

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           YSRRVL+GEF +VN  LL DL+ELG+W   MK+Q++   GSIQ I GIP  LK+LYKTVW
Sbjct: 653 YSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVW 712

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+T++DMAADRGAFIDQSQS N+++AE  +AK++SMHF+ WK GLKTGMYYLRT+PA
Sbjct: 713 EIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPA 772

Query: 948 ANAIQFTID 956
           A+AIQFT+D
Sbjct: 773 ADAIQFTVD 781



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 64/84 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F+F++LKKNTGKEE RARDLFY LW+ D FM RVE +  W+L C
Sbjct: 311 RKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFC 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN   GL+++  E+   LY KYEA
Sbjct: 371 PNEAPGLAETHSEEHRALYLKYEA 394



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 66/83 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD+FI+MR+PFD   +  LN +I ETIY+ AL AS E+A RDG Y++++GSP S
Sbjct: 530 IGIQGLADVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPAS 589

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQ+DMW VTP+  W+WA LK
Sbjct: 590 KGILQFDMWNVTPSSRWNWAELK 612



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 35/41 (85%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           ++   +LWFAI++SQ+ETGTP++LYKDACN KSNQ+NL  I
Sbjct: 402 VIKAQELWFAIMESQVETGTPFILYKDACNAKSNQKNLGTI 442



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++     GV  T+L + AA +  A +      + IL ++I             +++
Sbjct: 57  VAQKVVSGVFPGVKTTELDNLAA-ETAAYMSTRHPDYGILAARISVSN--------LHKQ 107

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +++  +E +++ Y  +N ++    P++S + YEI+MK+ +RL S I Y RDF+Y+FFGFK
Sbjct: 108 TSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFK 167


>gi|325286575|ref|YP_004262365.1| ribonucleoside-diphosphate reductase subunit alpha [Cellulophaga
           lytica DSM 7489]
 gi|324322029|gb|ADY29494.1| ribonucleoside-diphosphate reductase, alpha subunit [Cellulophaga
           lytica DSM 7489]
          Length = 825

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/468 (63%), Positives = 378/468 (80%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF+FL+LKKN GKEE RARDLFY +WIPD FM+RVE++A W+LMC
Sbjct: 292 RKGSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L     ++F++ Y  +EAEGK  + + AR LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPDLYKKHDKEFEEAYLAFEAEGKGRKTIKARDLWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYT+ DEVAVCNLASIAL M++   +  ++  +L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTAPDEVAVCNLASIALPMFVKNGE--FDHKELFRVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLN +ID N+YPV EA NSNMRHRPIG+GVQGLAD FI MR+PF  +E++ LN++I
Sbjct: 470 RVTRNLNTVIDRNYYPVVEAENSNMRHRPIGLGVQGLADAFIMMRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+YY A+ AS E+A  DGPY +YEGSP+S+G  Q+++WG+   +L   WDW  L++ +
Sbjct: 530 FETLYYAAVTASMEMAKEDGPYSSYEGSPISKGDFQHNLWGIKDDELSGRWDWEKLRKSV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DLV+L
Sbjct: 590 LKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVQL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++++K +L+  NGSIQ I+ IP+ +K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWNESLKQELMRANGSIQHIDIIPEDIKELYKTVWELSMKDIIDMSRHRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           N++M   NY+K++SMHF+ WK GLKTGMYYLRTK AA+AI+FT+D +K
Sbjct: 710 NLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTKAAADAIKFTVDNSK 757



 Score =  272 bits (696), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 123/194 (63%), Positives = 161/194 (82%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+   +L   WDW  L++ + K+GVRNSLL+APMPTAST+QILGNNE FEPYTS
Sbjct: 564 FQHNLWGIKDDELSGRWDWEKLRKSVLKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV+LGLW++++K +L+  NGSIQ I+ IP+ +K+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVQLGLWNESLKQELMRANGSIQHIDIIPEDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRHRGYFIDQSQSLNLFMENANYSKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK 959
            AA+AI+FT+D +K
Sbjct: 744 AAADAIKFTVDNSK 757



 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF+FL+LKKN GKEE RARDLFY +WIPD FM+RVE++A W+LMC
Sbjct: 292 RKGSFAVYVEPWHADIFEFLDLKKNHGKEEMRARDLFYAMWIPDLFMQRVEANADWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L     ++F++ Y  +EAEG
Sbjct: 352 PNECPDLYKKHDKEFEEAYLAFEAEG 377



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR+PF  +E++ LN++IFET+YY A+ AS E+A  DGPY +YEGSP+S
Sbjct: 501 LGVQGLADAFIMMRMPFTSDEAKKLNQEIFETLYYAAVTASMEMAKEDGPYSSYEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+++WG+   +L   WDW  L+   L  G++
Sbjct: 561 KGDFQHNLWGIKDDELSGRWDWEKLRKSVLKNGVR 595



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA ++ A +      +A L ++I             ++ + +   EV+++
Sbjct: 49  GVTTSELDNLAA-EIAATMTTTHPDYAKLAARISVSN--------LHKNTKKSFSEVMKD 99

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY  VN  TG + P++SD+ +++I  N+++L+S IIY+RDF Y++FGFK
Sbjct: 100 LYEYVNPRTGKKAPLLSDEVFKVIQDNSEKLDSTIIYNRDFGYDYFGFK 148



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 388 LWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|165969145|ref|YP_001651045.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
 gi|164663641|gb|ABY65861.1| ribonucleotide reductase small subunit 1 [Orgyia leucostigma NPV]
          Length = 761

 Score =  647 bits (1668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 283/466 (60%), Positives = 376/466 (80%), Gaps = 2/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLEPWH DI+DFL LK+N G E+ +ARDL Y LW+PD FM+RV+ +  WSLMC
Sbjct: 291 RKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQNEMWSLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +  +F+ LY++YE+E +F  QV AR L+  I+++Q+ETGTPY+LYKDACN
Sbjct: 351 PDRCPGLSDVYSLEFEKLYEQYESENRFTCQVEARSLFRTIIETQVETGTPYILYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTI+CSNLC EIV+Y+S +E+AVCNLAS+ +N +I      ++F  LK V K
Sbjct: 411 IKSNQKNLGTIRCSNLCAEIVQYSSSEEIAVCNLASVCVNRFIKSG--VFDFVALKSVTK 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV KNLNKIID+N+YP+E A+ SN++HRP+G+G+QGLAD F  + LP++ +++++LNKQI
Sbjct: 469 IVVKNLNKIIDINYYPLEAAKESNLKHRPVGVGIQGLADAFCILGLPYESDKAKMLNKQI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+YY ALEASC++A  +GPY +Y  SP S G+LQYDMW V PT+LW+WA LK +IAKH
Sbjct: 529 AETVYYAALEASCDLAKLNGPYSSYSDSPASLGVLQYDMWNVQPTNLWNWADLKLRIAKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+G+FQV+N HL+ DL  L L+
Sbjct: 589 GLRNSLLVAYMPTATTAQILGNNESFEPFTSNLYVRRVLAGDFQVINQHLVEDLCRLNLY 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           DD+M++ +I   GS+Q I+ IP  +K +YKTVWE+  K ++DMAADRGAFIDQSQS N++
Sbjct: 649 DDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWEMSSKNLIDMAADRGAFIDQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ ++A ++S+H H WK GLKTGMYYLRTKPAA+AI FT+DK  +
Sbjct: 709 IAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAADAIAFTVDKCSI 754



 Score =  278 bits (711), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 159/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT+LW+WA LK +IAKHG+RNSLL+A MPTA+TAQILGNNESFEP+TSN+Y
Sbjct: 563 LQYDMWNVQPTNLWNWADLKLRIAKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+G+FQV+N HL+ DL  L L+DD+M++ +I   GS+Q I+ IP  +K +YKTVWE
Sbjct: 623 VRRVLAGDFQVINQHLVEDLCRLNLYDDHMRNSIIAAGGSVQKIDRIPDDIKAVYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K ++DMAADRGAFIDQSQS N+++A+ ++A ++S+H H WK GLKTGMYYLRTKPAA
Sbjct: 683 MSSKNLIDMAADRGAFIDQSQSFNVFIAQPSFALLTSVHMHTWKRGLKTGMYYLRTKPAA 742

Query: 949 NAIQFTIDKTKM 960
           +AI FT+DK  +
Sbjct: 743 DAIAFTVDKCSI 754



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLEPWH DI+DFL LK+N G E+ +ARDL Y LW+PD FM+RV+ +  WSLMC
Sbjct: 291 RKGAMAVYLEPWHADIYDFLNLKRNMGAEDKKARDLLYALWVPDLFMKRVQQNEMWSLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GLSD +  +F+ LY++YE+E
Sbjct: 351 PDRCPGLSDVYSLEFEKLYEQYESE 375



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F  + LP++ +++++LNKQI ET+YY ALEASC++A  +GPY +Y  SP S
Sbjct: 500 VGIQGLADAFCILGLPYESDKAKMLNKQIAETVYYAALEASCDLAKLNGPYSSYSDSPAS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G+LQYDMW V PT+LW+WA LK+    +GL+
Sbjct: 560 LGVLQYDMWNVQPTNLWNWADLKLRIAKHGLR 591



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 30/36 (83%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L+  I+++Q+ETGTPY+LYKDACN KSNQ+NL  I 
Sbjct: 387 LFRTIIETQVETGTPYILYKDACNIKSNQKNLGTIR 422


>gi|335682|gb|AAA48274.1| Vaccinia virus matrix 1 protein [Vaccinia virus]
          Length = 771

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/466 (64%), Positives = 378/466 (81%), Gaps = 3/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL + WG++F+ LY  YE E ++   + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNL S+ALNM++   D  ++F KLK V K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLGSVALNMFV--IDGRFDFLKLKVVVK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID+N+YP+ EA  SN RHRPIGIGVQGLAD FI +  PFD  E++ +NK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDINKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGALEASCE+A ++GPY TY GS  S GILQYD+W V P+DLW+W  LK+KI  +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+AP+P    AQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E  LW
Sbjct: 591 GLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D +K++++ + GSIQ+   +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+  IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755



 Score =  275 bits (704), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 124/192 (64%), Positives = 161/192 (83%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+AP+P    AQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPLPLHQHAQILGNNESVEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 64/85 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+LKKNTG EE R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C GL + WG++F+ LY  YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ +NK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDINKKIFETIYYGALEASCELAEKE 549

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V QGI      GVT  +L D  A ++ A        +AIL ++I             +++
Sbjct: 43  VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   EV+E+L+N VN + G  +P+IS    +I+ K  D+LNS IIY+RDF+YN+FGFK
Sbjct: 90  TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/43 (60%), Positives = 36/43 (83%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +++    +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424


>gi|408491218|ref|YP_006867587.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Psychroflexus torquis ATCC 700755]
 gi|408468493|gb|AFU68837.1| ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Psychroflexus torquis ATCC 700755]
          Length = 815

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/490 (60%), Positives = 384/490 (78%), Gaps = 9/490 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+Y+EPWH DIF FL+LKKN G EE RARDLFY +WIPD FM+RVE ++ W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +   E+FD+LY KYE E K  + + AR+LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPNLYNVHSEEFDELYLKYEQENKGRKTIKARELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLASIAL M++   +  +   +L  + K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSPDEVAVCNLASIALPMFVKNGE--FQHKELYKITK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNLNK+ID N+YPV+EA NSN RHRP+G+G+QGLAD FI +R+PF  +E++ LN++I
Sbjct: 470 QIIKNLNKVIDRNYYPVKEAENSNFRHRPVGLGIQGLADAFIMLRMPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+E+S E+A  +GPY ++EGSP+S+G  Q+++WG+T  D    W+W+ L+EK+
Sbjct: 530 FETLYFAAVESSMELAKIEGPYSSFEGSPISKGEFQFNLWGLTDNDTSGRWNWSKLREKV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            KHGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL+DLV L
Sbjct: 590 MKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLKDLVSL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLWDD++KD ++  NGS+Q I+ IP  +K+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 GLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKTVWELSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK---- 563
           N++M    +AK++SMHF+ WK GLKTGMYYLRTK A +AI+FT+   K      S+    
Sbjct: 710 NLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTKSAVDAIKFTLKSEKKEKEAPSQVVQN 769

Query: 564 DARSQEEIQA 573
            A++ EE Q+
Sbjct: 770 AAKTYEEAQS 779



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 159/194 (81%), Gaps = 3/194 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++++WG+T  D    W+W+ L+EK+ KHGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQFNLWGLTDNDTSGRWNWSKLREKVMKHGVRNSLLMAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL+DLV LGLWDD++KD ++  NGS+Q I+ IP  +K+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLKDLVSLGLWDDDLKDAIMRANGSVQGIDIIPDDIKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M    +AK++SMHF+ WK GLKTGMYYLRTK
Sbjct: 684 VWELSMKDIIDMSRQRGYFIDQSQSLNLFMEGATFAKLTSMHFYAWKSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTK 959
            A +AI+FT+   K
Sbjct: 744 SAVDAIKFTLKSEK 757



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+Y+EPWH DIF FL+LKKN G EE RARDLFY +WIPD FM+RVE ++ W+LMC
Sbjct: 292 RKGSFAMYVEPWHADIFSFLDLKKNHGAEEMRARDLFYAMWIPDLFMKRVEENSTWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C  L +   E+FD+LY KYE E
Sbjct: 352 PNECPNLYNVHSEEFDELYLKYEQE 376



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD FI +R+PF  +E++ LN++IFET+Y+ A+E+S E+A  +GPY ++EGSP+S
Sbjct: 501 LGIQGLADAFIMLRMPFTSDEAKKLNQEIFETLYFAAVESSMELAKIEGPYSSFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+++WG+T  D    W+W+ L+   + +G++
Sbjct: 561 KGEFQFNLWGLTDNDTSGRWNWSKLREKVMKHGVR 595



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +LY  VN     ++P+I+D  Y++I ++ D L+S IIY RDFNY++FGFK
Sbjct: 95  EVMADLYEYVNPRNNKKSPLIADDVYKVIEEHKDELDSRIIYSRDFNYDYFGFK 148



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|68629683|gb|AAY99446.1| ribonucleotide reductase [Cyprinid herpesvirus 3]
          Length = 806

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/515 (59%), Positives = 389/515 (75%), Gaps = 21/515 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH D+FDFLEL+KNTG +E R RDLF  LWIPD FM+RV+   +WSLMC
Sbjct: 295 RPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +C GL + WG +F+ LY +YEAEGK  R V AR LW ++L +Q+ETG P+MLYKDACN
Sbjct: 355 PASCPGLDEVWGPEFEALYTRYEAEGKARRTVKARDLWNSVLVAQLETGGPFMLYKDACN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI------NPADKTYNFTK 264
            KSN Q+LGTIKCSNLCTEIV+YT+ +EVAVCNLAS+ALN ++      +P +  Y+F  
Sbjct: 415 AKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYE--YDFQL 472

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L DV +++T+NLNK+ID NFYPV EA  SN RHRPIGIGVQGLAD+F+ M +PF C ++R
Sbjct: 473 LADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTCGKAR 532

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWA 381
            +NK IFETIYY AL+ SC++A RDGPY TYEGSPVS+G+LQ+DMWG+   DL   WDW 
Sbjct: 533 DMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKREDLSGMWDWN 592

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
            L+ +I +HGVRNSLL++PMPTASTAQILGN ES EP +SN+Y RRVLSGEFQVVN HL+
Sbjct: 593 ELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLSGEFQVVNRHLV 652

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
             L  LGLW+DNM+ QLIV+ GS+Q+IEG P+ LK +YKT +EI QK ++ MAA+R  F+
Sbjct: 653 EALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDLITMAAERAPFV 712

Query: 502 DQSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           DQSQSLN+++ E    +   K+++MH H W  GLKTGMYYLRTK A   +QF++      
Sbjct: 713 DQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVAPVQFSV--APEV 770

Query: 558 NAMASKDARSQEEIQADQEQAMAAMICRRDNKEDC 592
           +A AS+  R+ E+  A  +Q    ++C   N+E C
Sbjct: 771 SAEASRKRRA-EDGSAFSKQPKLEVVC---NEEVC 801



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 13/235 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            ++DMWG+   DL   WDW  L+ +I +HGVRNSLL++PMPTASTAQILGN ES EP +S
Sbjct: 573 LQFDMWGLKREDLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSS 632

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           N+Y RRVLSGEFQVVN HL+  L  LGLW+DNM+ QLIV+ GS+Q+IEG P+ LK +YKT
Sbjct: 633 NLYQRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKT 692

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYY 941
            +EI QK ++ MAA+R  F+DQSQSLN+++ E    +   K+++MH H W  GLKTGMYY
Sbjct: 693 AYEISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYY 752

Query: 942 LRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           LRTK A   +QF++      +A AS+  R+ E+  A  +Q    ++C   N+E C
Sbjct: 753 LRTKAAVAPVQFSV--APEVSAEASRKRRA-EDGSAFSKQPKLEVVC---NEEVC 801



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH D+FDFLEL+KNTG +E R RDLF  LWIPD FM+RV+   +WSLMC
Sbjct: 295 RPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +C GL + WG +F+ LY +YEAEG
Sbjct: 355 PASCPGLDEVWGPEFEALYTRYEAEG 380



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           AM   + ++   IGVQGLAD+F+ M +PF C ++R +NK IFETIYY AL+ SC++A RD
Sbjct: 498 AMRSNKRHRPIGIGVQGLADVFMMMGIPFTCGKARDMNKMIFETIYYAALDESCKLAQRD 557

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           GPY TYEGSPVS+G+LQ+DMWG+   DL   WDW  L++    +G++
Sbjct: 558 GPYPTYEGSPVSKGLLQFDMWGLKREDLSGMWDWNELRLRIQRHGVR 604



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV + L+  VN +TG R P+I+ K YE+  K+A+RL++A+ +  DF Y++FGFK
Sbjct: 98  EVCKRLWFNVNPDTGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFK 151



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW ++L +Q+ETG P+MLYKDACN KSN Q+L  I+
Sbjct: 391 LWNSVLVAQLETGGPFMLYKDACNAKSNHQHLGTIK 426


>gi|326797772|ref|YP_004315591.1| ribonucleoside-diphosphate reductase subunit alpha
           [Sphingobacterium sp. 21]
 gi|326548536|gb|ADZ76921.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Sphingobacterium sp. 21]
          Length = 792

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/463 (63%), Positives = 376/463 (81%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH D++DF++L+KN GKEE RARDLF  LW+PD FM+RVE + +WSL  
Sbjct: 293 RKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFMKRVEENGEWSLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL++  GE F+ LY++YE EG+  + V A+ LWFAILD+QIETGTPY+LYKDA N
Sbjct: 353 PDEAPGLAECHGEAFEKLYEQYEREGRARKIVKAQDLWFAILDAQIETGTPYLLYKDAAN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQNLGTIK SNLCTEI+EYTS DEVAVCNLAS+AL  Y++  +  ++  KL D+  
Sbjct: 413 GKSNQQNLGTIKSSNLCTEIIEYTSADEVAVCNLASLALPRYVDNGE--FDHQKLFDITY 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT NLN+IID N+YPV+EARNSN+RHRP+G+GVQGLAD FI MR+PF+   ++ LNK I
Sbjct: 471 QVTINLNRIIDNNYYPVDEARNSNLRHRPVGLGVQGLADTFILMRMPFESEAAKQLNKDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+ AS ++A ++GPY++++GSP+SQG  Q+D+W V P +  WDW  L+++I K
Sbjct: 531 FETIYFAAMTASKDLAVKEGPYESFKGSPLSQGKFQFDLWNVKPDSGRWDWEGLRKEIKK 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY+RRVLSGEF +VN HLLRDLVELGL
Sbjct: 591 HGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYTRRVLSGEFVIVNKHLLRDLVELGL 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W++ MK+++I  NGSIQDI  IP  +K+LYKTVWEI  + ++DMAADRGAFI QSQSLN+
Sbjct: 651 WNNEMKNRIIAANGSIQDINEIPADIKELYKTVWEIKMRNIIDMAADRGAFICQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           ++     AK++SMHF+ WK GLKTGMYYLRT+ A  A++FT++
Sbjct: 711 FVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAATQAVKFTVE 753



 Score =  275 bits (704), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 125/189 (66%), Positives = 157/189 (83%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W V P +  WDW  L+++I KHGVRNSLL+APMPTAST+QILGNNE FEPYTSNI
Sbjct: 565 FQFDLWNVKPDSGRWDWEGLRKEIKKHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNI 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEF +VN HLLRDLVELGLW++ MK+++I  NGSIQDI  IP  +K+LYKTVW
Sbjct: 625 YTRRVLSGEFVIVNKHLLRDLVELGLWNNEMKNRIIAANGSIQDINEIPADIKELYKTVW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI  + ++DMAADRGAFI QSQSLN+++     AK++SMHF+ WK GLKTGMYYLRT+ A
Sbjct: 685 EIKMRNIIDMAADRGAFICQSQSLNLFVNTPTTAKLTSMHFYAWKKGLKTGMYYLRTQAA 744

Query: 948 ANAIQFTID 956
             A++FT++
Sbjct: 745 TQAVKFTVE 753



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH D++DF++L+KN GKEE RARDLF  LW+PD FM+RVE + +WSL  
Sbjct: 293 RKGAFAIYLEPWHADVYDFIDLRKNHGKEELRARDLFLALWVPDLFMKRVEENGEWSLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL++  GE F+ LY++YE EG
Sbjct: 353 PDEAPGLAECHGEAFEKLYEQYEREG 378



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI MR+PF+   ++ LNK IFETIY+ A+ AS ++A ++GPY++++GSP+S
Sbjct: 502 LGVQGLADTFILMRMPFESEAAKQLNKDIFETIYFAAMTASKDLAVKEGPYESFKGSPLS 561

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           QG  Q+D+W V P +  WDW  L+     +G++
Sbjct: 562 QGKFQFDLWNVKPDSGRWDWEGLRKEIKKHGVR 594



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/42 (71%), Positives = 34/42 (80%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V    LWFAILD+QIETGTPY+LYKDA N KSNQQNL  I+
Sbjct: 383 IVKAQDLWFAILDAQIETGTPYLLYKDAANGKSNQQNLGTIK 424



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA    +L       +A+L S+I       L+K+     S   +L     
Sbjct: 50  GVTTSELDNLAAETAASLTTK-HPDYALLASRIAVSN---LHKNTVKSFSETMSL----- 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY+ ++ +TG   P+I+D  YE+I  NA  L+S IIYDRDF++++FGFK
Sbjct: 101 LYHYIDPKTGKPAPLIADDVYEVIQANAMELDSHIIYDRDFSFDYFGFK 149


>gi|131840167|ref|YP_001096176.1| unnamed protein product [Cyprinid herpesvirus 3]
 gi|84181499|gb|ABC55102.1| hypothetical protein [Cyprinid herpesvirus 3]
 gi|109706742|gb|ABG42968.1| ribonucleotide reductase subunit 1 [Cyprinid herpesvirus 3]
 gi|129560660|dbj|BAF48955.1| ribonucleotide reductase large subunit [Cyprinid herpesvirus 3]
          Length = 806

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/515 (59%), Positives = 389/515 (75%), Gaps = 21/515 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH D+FDFLEL+KNTG +E R RDLF  LWIPD FM+RV+   +WSLMC
Sbjct: 295 RPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +C GL + WG +F+ LY +YEAEGK  R V AR LW ++L +Q+ETG P+MLYKDACN
Sbjct: 355 PASCPGLDEVWGPEFEALYTRYEAEGKARRTVKARDLWNSVLVAQLETGGPFMLYKDACN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI------NPADKTYNFTK 264
            KSN Q+LGTIKCSNLCTEIV+YT+ +EVAVCNLAS+ALN ++      +P +  Y+F  
Sbjct: 415 AKSNHQHLGTIKCSNLCTEIVQYTNSEEVAVCNLASVALNEFVRITIAEDPYE--YDFQL 472

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L DV +++T+NLNK+ID NFYPV EA  SN RHRPIGIGVQGLAD+F+ M +PF C ++R
Sbjct: 473 LADVVRMITRNLNKVIDGNFYPVPEAMRSNKRHRPIGIGVQGLADVFMMMGIPFTCGKAR 532

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWA 381
            +NK IFETIYY AL+ SC++A RDGPY TYEGSPVS+G+LQ+DMWG+   DL   WDW 
Sbjct: 533 DMNKMIFETIYYAALDESCKLAQRDGPYPTYEGSPVSKGLLQFDMWGLKREDLSGMWDWN 592

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
            L+ +I +HGVRNSLL++PMPTASTAQILGN ES EP +SN+Y RRVLSGEFQVVN HL+
Sbjct: 593 ELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSSNLYQRRVLSGEFQVVNRHLV 652

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
             L  LGLW+DNM+ QLIV+ GS+Q+IEG P+ LK +YKT +EI QK ++ MAA+R  F+
Sbjct: 653 EALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKTAYEISQKDLITMAAERAPFV 712

Query: 502 DQSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           DQSQSLN+++ E    +   K+++MH H W  GLKTGMYYLRTK A   +QF++      
Sbjct: 713 DQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYYLRTKAAVAPVQFSV--APEV 770

Query: 558 NAMASKDARSQEEIQADQEQAMAAMICRRDNKEDC 592
           +A AS+  R+ E+  A  +Q    ++C   N+E C
Sbjct: 771 SAEASRKRRA-EDGSAFSKQPKLEVVC---NEEVC 801



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 13/235 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            ++DMWG+   DL   WDW  L+ +I +HGVRNSLL++PMPTASTAQILGN ES EP +S
Sbjct: 573 LQFDMWGLKREDLSGMWDWNELRLRIQRHGVRNSLLVSPMPTASTAQILGNTESIEPLSS 632

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           N+Y RRVLSGEFQVVN HL+  L  LGLW+DNM+ QLIV+ GS+Q+IEG P+ LK +YKT
Sbjct: 633 NLYQRRVLSGEFQVVNRHLVEALERLGLWNDNMRTQLIVHKGSVQNIEGFPEHLKPIYKT 692

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYY 941
            +EI QK ++ MAA+R  F+DQSQSLN+++ E    +   K+++MH H W  GLKTGMYY
Sbjct: 693 AYEISQKDLITMAAERAPFVDQSQSLNLFLCEDDPKLKMKKLTAMHLHAWSSGLKTGMYY 752

Query: 942 LRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           LRTK A   +QF++      +A AS+  R+ E+  A  +Q    ++C   N+E C
Sbjct: 753 LRTKAAVAPVQFSV--APEVSAEASRKRRA-EDGSAFSKQPKLEVVC---NEEVC 801



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH D+FDFLEL+KNTG +E R RDLF  LWIPD FM+RV+   +WSLMC
Sbjct: 295 RPGALAVYMEPWHVDVFDFLELRKNTGSDEQRTRDLFQALWIPDLFMQRVKDGGEWSLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +C GL + WG +F+ LY +YEAEG
Sbjct: 355 PASCPGLDEVWGPEFEALYTRYEAEG 380



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           AM   + ++   IGVQGLAD+F+ M +PF C ++R +NK IFETIYY AL+ SC++A RD
Sbjct: 498 AMRSNKRHRPIGIGVQGLADVFMMMGIPFTCGKARDMNKMIFETIYYAALDESCKLAQRD 557

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           GPY TYEGSPVS+G+LQ+DMWG+   DL   WDW  L++    +G++
Sbjct: 558 GPYPTYEGSPVSKGLLQFDMWGLKREDLSGMWDWNELRLRIQRHGVR 604



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV + L+  VN +TG R P+I+ K YE+  K+A+RL++A+ +  DF Y++FGFK
Sbjct: 98  EVCKRLWFNVNPDTGLRAPLIAQKFYEVSQKHAERLDAAVRHHADFGYSYFGFK 151



 Score = 52.8 bits (125), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW ++L +Q+ETG P+MLYKDACN KSN Q+L  I+
Sbjct: 391 LWNSVLVAQLETGGPFMLYKDACNAKSNHQHLGTIK 426


>gi|401424884|ref|XP_003876927.1| ribonucleoside-diphosphate reductase large chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
 gi|322493171|emb|CBZ28456.1| ribonucleoside-diphosphate reductase large chain,putative
           [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 799

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/506 (59%), Positives = 400/506 (79%), Gaps = 16/506 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD +GE+F+ LY++YE+EG+ ++ + A+++WFAIL+SQIETG P++LYKDACN
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEGRGVKTIQAQEVWFAILESQIETGGPFILYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS  E AVCNLASIAL  +++   + +N   L  V K
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVE AR+SNMR+RPIG+GVQGLAD FI MRLPF   E++ +N +I
Sbjct: 483 QITRNLNRVIDRNYYPVETARHSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FETIY+ A+E+S E+A  +GPY+T++GSP S+GILQ+DMW    P +  WDWA+LKEK+ 
Sbjct: 543 FETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKNPRPNSGRWDWASLKEKVM 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL+  G
Sbjct: 603 QVGLRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++M++++I  NGSI  I GIP  L++LY+TVWEIPQ+ ++DMA DRG +IDQSQSLN
Sbjct: 663 LWNESMRNEIISYNGSILTINGIPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      +++SM F+ W+ GLKTG+YYLRTK AA+AI+FT+D  +M            
Sbjct: 723 LFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKAAADAIKFTVDAKRM------------ 770

Query: 569 EEIQADQEQAMAAMICRRDNK-EDCI 593
           +EIQ ++E +   M  RR ++ E+C+
Sbjct: 771 KEIQ-ERENSQQTMSSRRASQPEECL 795



 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 125/232 (53%), Positives = 172/232 (74%), Gaps = 16/232 (6%)

Query: 769 FKYDMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW    P +  WDWA+LKEK+ + G+RNSLL+APMPTAST+QILGNNE FEP+TSN
Sbjct: 577 LQFDMWKNPRPNSGRWDWASLKEKVMQVGLRNSLLVAPMPTASTSQILGNNECFEPFTSN 636

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEF VVN +L+ DL+  GLW+++M++++I  NGSI  I GIP  L++LY+TV
Sbjct: 637 IYVRRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGIPDDLRELYRTV 696

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEIPQ+ ++DMA DRG +IDQSQSLN+++      +++SM F+ W+ GLKTG+YYLRTK 
Sbjct: 697 WEIPQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGLYYLRTKA 756

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNK-EDCL 997
           AA+AI+FT+D  +M            +EIQ ++E +   M  RR ++ E+CL
Sbjct: 757 AADAIKFTVDAKRM------------KEIQ-ERENSQQTMSSRRASQPEECL 795



 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADIFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +GE+F+ LY++YE+EG
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEG 388



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD FI MRLPF   E++ +N +IFETIY+ A+E+S E+A  +GPY+T++
Sbjct: 509 NRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFK 568

Query: 648 GSPVSQGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+DMW    P +  WDWA+LK   +  GL+
Sbjct: 569 GSPASEGILQFDMWKNPRPNSGRWDWASLKEKVMQVGLR 607



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++WFAIL+SQIETG P++LYKDACN KSNQ+NL  I+
Sbjct: 398 EVWFAILESQIETGGPFILYKDACNSKSNQKNLGTIK 434



 Score = 42.0 bits (97), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 37/69 (53%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L   + ++++N   LE    L++ V  +T    P+I+   +E++ ++   L   I Y RD
Sbjct: 86  LCTTSLHKQTNASLLETFRLLHDHVTVQTNRPAPLIAGDVWEVMQQHHKELQGMIDYSRD 145

Query: 762 FNYNFFGFK 770
            ++ FFG+K
Sbjct: 146 LSFEFFGYK 154


>gi|150024560|ref|YP_001295386.1| ribonucleoside-diphosphate reductase subunit alpha [Flavobacterium
           psychrophilum JIP02/86]
 gi|149771101|emb|CAL42568.1| Ribonucleoside-diphosphate reductase, alpha subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 806

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/513 (58%), Positives = 390/513 (76%), Gaps = 14/513 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +GE+F+ +Y  YE  GK  + + A +LW  IL+SQIETGTPYMLYKDA N
Sbjct: 352 PNECPGLYDVYGEEFEKMYTNYEKAGKGRKTIKAHELWEKILESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTSKDE+AVCNLAS++L M+I   + T+N   L  V K
Sbjct: 412 RKSNQKNLGTIRSSNLCTEIMEYTSKDEIAVCNLASLSLPMFIE--NGTFNHDLLFTVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VT+NLNK+ID N+YPV+E  NSN RHRPIG+GVQGLAD FI +RLPF  ++++ LN++I
Sbjct: 470 RVTRNLNKVIDRNYYPVKEGENSNKRHRPIGLGVQGLADAFIMLRLPFTSDQAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS E+A  +GPY T+ GSP+SQG  QY++WG+   +L   WDWA L++++
Sbjct: 530 FETLYFAAVTASMEMAIEEGPYSTFAGSPISQGEFQYNLWGLKDEELSGRWDWANLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+GVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLVE 
Sbjct: 590 MKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLNDLVER 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW +++K QL+  NGS+Q +  IPQ LK+LYKTVWE+  K ++DM+  RG F+DQSQSL
Sbjct: 650 GLWTEDLKQQLMRENGSVQKL-NIPQDLKELYKTVWEMSMKDIIDMSRQRGYFVDQSQSL 708

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK---- 563
           N++M + NY+K++SMHF+ WK GLKTGMYYLRTK A +AI+FT++  K A  +  +    
Sbjct: 709 NLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTKAAVDAIKFTLNNDKKAEPITIEVKQQ 768

Query: 564 ----DARSQEEIQADQEQAMAAMICRRDNKEDC 592
               +   Q +   ++E +    + +    EDC
Sbjct: 769 TTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDC 801



 Score =  272 bits (696), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 129/239 (53%), Positives = 175/239 (73%), Gaps = 12/239 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++WG+   +L   WDWA L++++ K+GVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWGLKDEELSGRWDWANLRKEVMKNGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLVE GLW +++K QL+  NGS+Q +  IPQ LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLNDLVERGLWTEDLKQQLMRENGSVQKL-NIPQDLKELYKT 682

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG F+DQSQSLN++M + NY+K++SMHF+ WK GLKTGMYYLRTK
Sbjct: 683 VWEMSMKDIIDMSRQRGYFVDQSQSLNLFMQDANYSKLTSMHFYAWKSGLKTGMYYLRTK 742

Query: 946 PAANAIQFTIDKTKMANAMASK--------DTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A +AI+FT++  K A  +  +        +   Q +   ++E +    + +    EDC
Sbjct: 743 AAVDAIKFTLNNDKKAEPITIEVKQQTTLTEVEPQTKTMTNEEYSAMIQLAKNATPEDC 801



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+E WH DIF+FL+LKKNTGKEE RARDLF+ +W  D FM+RVE +  W+LMC
Sbjct: 292 RKGSFAIYIETWHADIFEFLDLKKNTGKEEMRARDLFFAMWTSDLFMKRVEENGDWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D +GE+F+ +Y  YE  G
Sbjct: 352 PNECPGLYDVYGEEFEKMYTNYEKAG 377



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 69/95 (72%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI +RLPF  ++++ LN++IFET+Y+ A+ AS E+A  +GPY T+ GSP+S
Sbjct: 501 LGVQGLADAFIMLRLPFTSDQAKKLNQEIFETLYFAAVTASMEMAIEEGPYSTFAGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY++WG+   +L   WDWA L+   +  G++
Sbjct: 561 QGEFQYNLWGLKDEELSGRWDWANLRKEVMKNGVR 595



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%)

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +N+   E + E+Y+ VN   G   P++S++ + +I +NA  LNS IIY RDFNY++FGFK
Sbjct: 89  TNKSFSETMNEMYHYVNPRNGQEAPLLSEEVHTVIQENAAFLNSHIIYTRDFNYDYFGFK 148



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  IL+SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKILESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|154340341|ref|XP_001566127.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063446|emb|CAM39626.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 799

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/505 (59%), Positives = 393/505 (77%), Gaps = 14/505 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FM+RV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEGRWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD  GE F+ LY++YEAEG+ ++ + A+++WFAIL+SQIETG P++LYKDACN
Sbjct: 363 PNTCPGLSDCHGEAFERLYERYEAEGRGVKTIQAQEVWFAILESQIETGGPFILYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS +E AVCNLASIAL  +++   + +N   L  V K
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYTSPEETAVCNLASIALPRFVDVEKREFNHQLLYAVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVE AR SNMR+RPIG+GVQGLAD FI MRLPF   E++ +N +I
Sbjct: 483 QITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADTFILMRLPFVSAEAQRVNAEI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FETIY+ A+E+S E+A  +GPY+T++GSP S+GILQ+DMW    P +  WDWA+LKEK+ 
Sbjct: 543 FETIYFAAVESSMELAKEEGPYETFKGSPASEGILQFDMWKNARPNSGRWDWASLKEKVM 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL++PMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL+  G
Sbjct: 603 QVGIRNSLLVSPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++ M++++I  NGSI +I+GIP  LK+LY+TVWEIPQ+ ++DMA DRG +IDQSQSLN
Sbjct: 663 LWNEQMRNEIISYNGSILNIDGIPDDLKELYRTVWEIPQRKLIDMARDRGQYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      +++SM F+GW+ GLKTG+YYLRTK AA+AI+FT+            DA+  
Sbjct: 723 LFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKAAADAIKFTV------------DAKRL 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCI 593
           +EIQ  +         R    E+C+
Sbjct: 771 KEIQERESSQQTMSSHRVSQPEECL 795



 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 122/231 (52%), Positives = 167/231 (72%), Gaps = 14/231 (6%)

Query: 769 FKYDMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW    P +  WDWA+LKEK+ + G+RNSLL++PMPTAST+QILGNNE FEP+TSN
Sbjct: 577 LQFDMWKNARPNSGRWDWASLKEKVMQVGIRNSLLVSPMPTASTSQILGNNECFEPFTSN 636

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEF VVN +L+ DL+  GLW++ M++++I  NGSI +I+GIP  LK+LY+TV
Sbjct: 637 IYVRRVLSGEFPVVNKYLVMDLIARGLWNEQMRNEIISYNGSILNIDGIPDDLKELYRTV 696

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEIPQ+ ++DMA DRG +IDQSQSLN+++      +++SM F+GW+ GLKTG+YYLRTK 
Sbjct: 697 WEIPQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYGWEAGLKTGVYYLRTKA 756

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           AA+AI+FT+D  ++            +EIQ  +         R    E+CL
Sbjct: 757 AADAIKFTVDAKRL------------KEIQERESSQQTMSSHRVSQPEECL 795



 Score =  136 bits (342), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FM+RV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMKRVKSEGRWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD  GE F+ LY++YEAEG
Sbjct: 363 PNTCPGLSDCHGEAFERLYERYEAEG 388



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD FI MRLPF   E++ +N +IFETIY+ A+E+S E+A  +GPY+T++
Sbjct: 509 NRPIGLGVQGLADTFILMRLPFVSAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFK 568

Query: 648 GSPVSQGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+DMW    P +  WDWA+LK   +  G++
Sbjct: 569 GSPASEGILQFDMWKNARPNSGRWDWASLKEKVMQVGIR 607



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++WFAIL+SQIETG P++LYKDACN KSNQ+NL  I+
Sbjct: 398 EVWFAILESQIETGGPFILYKDACNSKSNQKNLGTIK 434



 Score = 46.2 bits (108), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 40/69 (57%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L   + ++++++  LE    L++ V  +T    P+++D  +E++ ++   L S I Y RD
Sbjct: 86  LCTTSLHKQTSESLLETFRLLHDHVTVQTHRPAPLVADDVWEVMQQHHKELQSMIDYSRD 145

Query: 762 FNYNFFGFK 770
            N+ FFG+K
Sbjct: 146 LNFEFFGYK 154


>gi|365981623|ref|XP_003667645.1| hypothetical protein NDAI_0A02440 [Naumovozyma dairenensis CBS 421]
 gi|343766411|emb|CCD22402.1| hypothetical protein NDAI_0A02440 [Naumovozyma dairenensis CBS 421]
          Length = 852

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/479 (61%), Positives = 379/479 (79%), Gaps = 6/479 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGQWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D +G +F +LY++YE EG   + + A+KLW+AIL++Q ETGTP+++YKDACN
Sbjct: 353 PSDAPGLDDVYGNEFVELYERYEREG-LGKTIKAQKLWYAILEAQTETGTPFIIYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
            K+NQ+NLG IK SNLC EIVE++S DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 EKTNQKNLGVIKSSNLCCEIVEWSSPDETAVCNLASVALPAFIETSEDGKTSTYNFEKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           +++K+VT NLN++ID N+YPV EA  SN+RHRPI +GVQGLAD ++ +RLPF+   + LL
Sbjct: 472 EISKVVTYNLNRVIDNNYYPVPEAERSNVRHRPIALGVQGLADTYMLLRLPFESEGASLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFET+Y+ +LEASCE+A +DGPY+T++GSP S+GILQ DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETMYHASLEASCELAQKDGPYETFQGSPASEGILQMDMWDQEPLGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K+G+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  +I  NGSIQ++  +P +LK LYKTVWEI QK ++DMAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQHIITENGSIQNLPNVPAELKALYKTVWEISQKKIIDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+  +A+  AS  A
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQA-VADKAASNIA 769



 Score =  265 bits (677), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/189 (63%), Positives = 150/189 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L++ I K+G+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQMDMWDQEPLGMWDWETLRKDIVKYGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  +I  NGSIQ++  +P +LK LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQHIITENGSIQNLPNVPAELKALYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKKIIDMAADRSIYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDK 957
            AIQFTID+
Sbjct: 750 AAIQFTIDQ 758



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 69/87 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF+E++KN GKEE RARDLF  LWIPD FM+RVE + QW+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIEIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGQWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GL D +G +F +LY++YE EGL
Sbjct: 353 PSDAPGLDDVYGNEFVELYERYEREGL 379



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+   + LLNKQIFET+Y+ +LEASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTYMLLRLPFESEGASLLNKQIFETMYHASLEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ DMW   P  +WDW  L+   + YGL+
Sbjct: 566 SEGILQMDMWDQEPLGMWDWETLRKDIVKYGLR 598



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 70/120 (58%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L +++       L+K    R 
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARLAISN---LHKQTTKRF 94

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           S     +VI +L++ VN   G  +PMIS K Y+I+M N D L+S+I+YDRDF++N+FGFK
Sbjct: 95  S-----QVIYDLHHYVNPLNGIPSPMISKKVYDIVMANKDLLDSSIVYDRDFSFNYFGFK 149



 Score = 62.8 bits (151), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 34/37 (91%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+++YKDACN K+NQ+NL VI+
Sbjct: 387 KLWYAILEAQTETGTPFIIYKDACNEKTNQKNLGVIK 423


>gi|340504856|gb|EGR31263.1| ribonucleoside-diphosphate large, putative [Ichthyophthirius
           multifiliis]
          Length = 804

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 294/465 (63%), Positives = 381/465 (81%), Gaps = 3/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+FDFL+LKKN GKEE RARDLFY LWIPD FMRRV +D  W+LMC
Sbjct: 257 RKGSFAIYLEPWHADVFDFLQLKKNHGKEEQRARDLFYALWIPDIFMRRVIADEHWTLMC 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D WGE+F+ LY+KYE EGK  +++ AR+LW  I+DSQIETGTPYMLYKDACN
Sbjct: 317 PNECLGLPDVWGEEFEKLYEKYEREGKGRKRIKARELWQDIIDSQIETGTPYMLYKDACN 376

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
           RKSNQQNLGTI+ SNLCTEI+EYTS DE+AVCNLASI+L  ++  +  +  + + KL ++
Sbjct: 377 RKSNQQNLGTIRSSNLCTEIIEYTSPDEIAVCNLASISLQKFVVEDNENSYFEYNKLYEI 436

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           +KIVT NLN++ID N+YPV +AR SNM+HRPIGIGVQGLAD F+++++ F+  ++  +N+
Sbjct: 437 SKIVTFNLNRVIDENYYPVPQARLSNMKHRPIGIGVQGLADAFMKLKVSFESEKALEINE 496

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WDWAALKEKI 387
           +IFETIYYGA EAS E+A +DG Y ++ GSP SQG LQ+D+W   P    +DW +LK KI
Sbjct: 497 KIFETIYYGACEASMELAIKDGCYASFVGSPASQGKLQFDLWNYKPHKCGYDWDSLKSKI 556

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+G+RNSLLIAPMPTAST+QILGN ESFEPYTSN+Y+RRVL+GEF  VN HL++DL+++
Sbjct: 557 QKYGMRNSLLIAPMPTASTSQILGNCESFEPYTSNLYTRRVLAGEFVCVNPHLVQDLIKI 616

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
             W  ++K+QL+  NGS+Q I+ IP+ LKD+YKTVWE+ QK ++++A  R  FIDQSQSL
Sbjct: 617 NQWTPSVKNQLLAYNGSVQQIQEIPESLKDIYKTVWEVSQKAIINLALSRSPFIDQSQSL 676

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           NI+++E +Y+KM+SMHF+ W+ GLKTGMYYLR++PAA+ I+FT+D
Sbjct: 677 NIHISEPSYSKMTSMHFYAWEKGLKTGMYYLRSRPAADPIKFTLD 721



 Score =  254 bits (649), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/189 (59%), Positives = 155/189 (82%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P    +DW +LK KI K+G+RNSLLIAPMPTAST+QILGN ESFEPYTSN+
Sbjct: 533 LQFDLWNYKPHKCGYDWDSLKSKIQKYGMRNSLLIAPMPTASTSQILGNCESFEPYTSNL 592

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEF  VN HL++DL+++  W  ++K+QL+  NGS+Q I+ IP+ LKD+YKTVW
Sbjct: 593 YTRRVLAGEFVCVNPHLVQDLIKINQWTPSVKNQLLAYNGSVQQIQEIPESLKDIYKTVW 652

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+ QK ++++A  R  FIDQSQSLNI+++E +Y+KM+SMHF+ W+ GLKTGMYYLR++PA
Sbjct: 653 EVSQKAIINLALSRSPFIDQSQSLNIHISEPSYSKMTSMHFYAWEKGLKTGMYYLRSRPA 712

Query: 948 ANAIQFTID 956
           A+ I+FT+D
Sbjct: 713 ADPIKFTLD 721



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+FDFL+LKKN GKEE RARDLFY LWIPD FMRRV +D  W+LMC
Sbjct: 257 RKGSFAIYLEPWHADVFDFLQLKKNHGKEEQRARDLFYALWIPDIFMRRVIADEHWTLMC 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL D WGE+F+ LY+KYE EG
Sbjct: 317 PNECLGLPDVWGEEFEKLYEKYEREG 342



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+++++ F+  ++  +N++IFETIYYGA EAS E+A +DG Y ++ GSP S
Sbjct: 470 IGVQGLADAFMKLKVSFESEKALEINEKIFETIYYGACEASMELAIKDGCYASFVGSPAS 529

Query: 653 QGILQYDMWGVTPTDL-WDWAALKVLALVYGLK 684
           QG LQ+D+W   P    +DW +LK     YG++
Sbjct: 530 QGKLQFDLWNYKPHKCGYDWDSLKSKIQKYGMR 562



 Score = 66.2 bits (160), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  I+DSQIETGTPYMLYKDACNRKSNQQNL  I
Sbjct: 352 ELWQDIIDSQIETGTPYMLYKDACNRKSNQQNLGTI 387



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +  +E I++LYN  + +   +  +I+D  Y+I+++NAD +   I Y+RD+ Y+FF
Sbjct: 52  HKETKETFVETIQDLYNYKDNQ-NRKASLIADDVYQIVIENADLIQQQINYERDYTYDFF 110

Query: 768 GFK 770
           GFK
Sbjct: 111 GFK 113


>gi|147775539|emb|CAN71697.1| hypothetical protein VITISV_003192 [Vitis vinifera]
          Length = 791

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/522 (58%), Positives = 383/522 (73%), Gaps = 44/522 (8%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+  WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL+D WG++F DLY +YE EGK  + V A+ LWF +L SQIETGTPYML+KD+CN
Sbjct: 353 PXEAPGLADCWGQEFVDLYTQYEREGKAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           +KSNQQNLGTIK SNLCTEI+EYTS DE AVCNLASIAL  Y+         NP+     
Sbjct: 413 KKSNQQNLGTIKSSNLCTEIIEYTSADETAVCNLASIALPRYVREKGVPMESNPSKLVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V  IVT NLNKIIDVN+YP                  QGLAD FI
Sbjct: 473 RGSKNRFFDFDKLAEVTAIVTSNLNKIIDVNYYPF-----------------QGLADTFI 515

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK IFETIYY AL+ASCE+A R+GPY+TY+G PVS+GILQ DMWGV
Sbjct: 516 LLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGILQPDMWGV 575

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  WDW AL++ I+++G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 576 TPSSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 635

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+Q+I  NGS+  +  IP+ LK +Y+TVWEI QKT++D
Sbjct: 636 FVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQKTLVD 695

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 696 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 755

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
            + +     + D         D +  MA M+C   N+E+C+ 
Sbjct: 756 TSILQERTKTAD---------DDDTKMAQMVCSLTNREECMA 788



 Score =  289 bits (739), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 131/226 (57%), Positives = 172/226 (76%), Gaps = 9/226 (3%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+  WDW AL++ I+++G+RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 571 DMWGVTPSSRWDWDALRKMISENGIRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 630

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+Q+I  NGS+  +  IP+ LK +Y+TVWEI Q
Sbjct: 631 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNQIIYENGSVLKMSEIPEDLKVIYRTVWEIKQ 690

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           KT++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W  GLKTGMYYLR++ AA+AI
Sbjct: 691 KTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAI 750

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           +FT+D + +     + D         D +  MA M+C   N+E+C+
Sbjct: 751 KFTVDTSILQERTKTAD---------DDDTKMAQMVCSLTNREECM 787



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+  WSL C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGHWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P    GL+D WG++F DLY +YE EG
Sbjct: 353 PXEAPGLADCWGQEFVDLYTQYEREG 378



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 104/172 (60%), Gaps = 15/172 (8%)

Query: 596 QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGI 655
           QGLAD FI + + FD  E++ LNK IFETIYY AL+ASCE+A R+GPY+TY+G PVS+GI
Sbjct: 508 QGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASCELAMREGPYETYDGCPVSKGI 567

Query: 656 LQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSN 712
           LQ DMWGVTP+  WDW AL+ +    G++   ++L + + T  T  +L  + C     SN
Sbjct: 568 LQPDMWGVTPSSRWDWDALRKMISENGIR--NSLLVAPMPTASTSQILGNNECFEPYTSN 625

Query: 713 QQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAII 757
             +  V+   + +VNK       E G  +P + +   +II +N   L  + I
Sbjct: 626 IYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKN---QIIYENGSVLKMSEI 674



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+E+YN  N+ +G + P+I+   YEIIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKEMYNHFNERSGLKAPLIAADVYEIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG    DL+       K   +V    LWF +L SQIETGTPYML+KD+CN+KSNQQNL
Sbjct: 361 DCWGQEFVDLYTQYEREGKAKKVVQAQNLWFEVLKSQIETGTPYMLFKDSCNKKSNQQNL 420

Query: 717 EVIE 720
             I+
Sbjct: 421 GTIK 424


>gi|146091813|ref|XP_001470128.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania infantum JPCM5]
 gi|134084922|emb|CAM69320.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania infantum JPCM5]
          Length = 799

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/505 (59%), Positives = 391/505 (77%), Gaps = 14/505 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD +GE+F+ LY++YE+EG+ ++ + A+++WFAIL+SQIETG P++LYKDACN
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEGRGVKTIQAQEVWFAILESQIETGGPFILYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS  E AVCNLASIAL  +++   + +N   L  V K
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVE AR SNMR+RPIG+GVQGLAD FI MRLPF   E++ +N +I
Sbjct: 483 QITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FETIY+ A+E+S E+A  DGPY+T+ GSP S+GILQ+DMW    P +  WDWA+LKEK+ 
Sbjct: 543 FETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKNARPNSGRWDWASLKEKVM 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL+  G
Sbjct: 603 QVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++M++++I  NGSI  I G+P  L++LY+TVWEIPQ+ ++DMA DRG +IDQSQSLN
Sbjct: 663 LWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      +++SM F+ W+ GLKTG+YYLRTK AA+AI+FT+D  +M            
Sbjct: 723 LFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFTVDAKRM------------ 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCI 593
           +EIQ  +         R    E+C+
Sbjct: 771 KEIQERENSQQTMSSHRASQPEECL 795



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 165/231 (71%), Gaps = 14/231 (6%)

Query: 769 FKYDMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW    P +  WDWA+LKEK+ + G+RNSLL+APMPTAST+QILGNNE FEP+TSN
Sbjct: 577 LQFDMWKNARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSN 636

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEF VVN +L+ DL+  GLW+++M++++I  NGSI  I G+P  L++LY+TV
Sbjct: 637 IYVRRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTV 696

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEIPQ+ ++DMA DRG +IDQSQSLN+++      +++SM F+ W+ GLKTG+YYLRTK 
Sbjct: 697 WEIPQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKA 756

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           AA+AI+FT+D  +M            +EIQ  +         R    E+CL
Sbjct: 757 AADAIKFTVDAKRM------------KEIQERENSQQTMSSHRASQPEECL 795



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +GE+F+ LY++YE+EG
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEG 388



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 2/99 (2%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD FI MRLPF   E++ +N +IFETIY+ A+E+S E+A  DGPY+T+ 
Sbjct: 509 NRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFT 568

Query: 648 GSPVSQGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+DMW    P +  WDWA+LK   +  G++
Sbjct: 569 GSPASEGILQFDMWKNARPNSGRWDWASLKEKVMQVGMR 607



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++WFAIL+SQIETG P++LYKDACN KSNQ+NL  I+
Sbjct: 398 EVWFAILESQIETGGPFILYKDACNSKSNQKNLGTIK 434



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L   + ++++N+  LE    L++ V  +T    P+I+D  +E++ ++   L S I Y RD
Sbjct: 86  LCTTSLHKQTNESLLETFRLLHDHVTVQTNRPAPLIADDVWEVMQQHHKELQSMIDYSRD 145

Query: 762 FNYNFFGFK 770
            N+ FFG+K
Sbjct: 146 LNFEFFGYK 154


>gi|403339052|gb|EJY68774.1| Ribonucleoside-diphosphate reductase [Oxytricha trifallax]
          Length = 857

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/496 (60%), Positives = 385/496 (77%), Gaps = 10/496 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+Y+EPWH DI+DFL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+LMC
Sbjct: 311 RKGAFAVYVEPWHADIYDFLQLRKNHGKEENRARDLFYALWTPDLFMRRVEANEDWTLMC 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL+ +WGE+F+ LY +YE  G+  + V AR LW  I++SQ ETGTPYMLYKDACN
Sbjct: 371 PNECPGLTTTWGEEFEKLYIEYETTGRGRKTVKARWLWGQIIESQNETGTPYMLYKDACN 430

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEIVE+TS DEVAVCNLASIALN ++    + Y++ KL  V K
Sbjct: 431 RKSNQQNLGTIKSSNLCTEIVEFTSPDEVAVCNLASIALNRFVLKETQEYDYEKLHYVTK 490

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +TKNLNKIID N+YPV EARNSN+RHRPIGIGVQG AD    +++PF+  ++  LN+ I
Sbjct: 491 RITKNLNKIIDNNYYPVPEARNSNLRHRPIGIGVQGFADALQMLKIPFEDQKALRLNELI 550

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
           FETIY+ A+EAS E A  +GPY+T+ GSP+S+G+ Q+D+W   P +D +DW  L++ + +
Sbjct: 551 FETIYHAAMEASMEQAKVEGPYETFPGSPLSKGLFQFDLWNKKPCSDRYDWEQLRKDVIQ 610

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           +G RNSLL+APMPTAST+QILGNNE+FEPYTSN+Y+RRVL+GEF  VN HL++DL++  L
Sbjct: 611 YGARNSLLLAPMPTASTSQILGNNETFEPYTSNVYTRRVLAGEFVCVNPHLVQDLIDNDL 670

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           +  ++K+ L+  NGSIQ I+ IPQ +KDLYKTVWEIPQK +LD+A  RG +I QSQS NI
Sbjct: 671 FSSDIKNSLLGLNGSIQKIKSIPQNIKDLYKTVWEIPQKVLLDLAIGRGPYICQSQSTNI 730

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA---------M 560
           YM E N+AKM+SMHF+GWK GLKTG YYLR+KP+ +AI+FT+D   +  A         +
Sbjct: 731 YMGEPNFAKMTSMHFYGWKNGLKTGQYYLRSKPSRDAIKFTVDIEHLLEATDGGNTDQII 790

Query: 561 ASKDARSQEEIQADQE 576
            + +  SQ+ I  DQE
Sbjct: 791 KALNVDSQKVIHNDQE 806



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/222 (56%), Positives = 166/222 (74%), Gaps = 10/222 (4%)

Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W   P +D +DW  L++ + ++G RNSLL+APMPTAST+QILGNNE+FEPYTSN+
Sbjct: 585 FQFDLWNKKPCSDRYDWEQLRKDVIQYGARNSLLLAPMPTASTSQILGNNETFEPYTSNV 644

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEF  VN HL++DL++  L+  ++K+ L+  NGSIQ I+ IPQ +KDLYKTVW
Sbjct: 645 YTRRVLAGEFVCVNPHLVQDLIDNDLFSSDIKNSLLGLNGSIQKIKSIPQNIKDLYKTVW 704

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EIPQK +LD+A  RG +I QSQS NIYM E N+AKM+SMHF+GWK GLKTG YYLR+KP+
Sbjct: 705 EIPQKVLLDLAIGRGPYICQSQSTNIYMGEPNFAKMTSMHFYGWKNGLKTGQYYLRSKPS 764

Query: 948 ANAIQFTIDKTKMANAMASKDT---------RSQEEIQADQE 980
            +AI+FT+D   +  A    +T          SQ+ I  DQE
Sbjct: 765 RDAIKFTVDIEHLLEATDGGNTDQIIKALNVDSQKVIHNDQE 806



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+Y+EPWH DI+DFL+L+KN GKEE RARDLFY LW PD FMRRVE++  W+LMC
Sbjct: 311 RKGAFAVYVEPWHADIYDFLQLRKNHGKEENRARDLFYALWTPDLFMRRVEANEDWTLMC 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GL+ +WGE+F+ LY +YE  G
Sbjct: 371 PNECPGLTTTWGEEFEKLYIEYETTG 396



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD    +++PF+  ++  LN+ IFETIY+ A+EAS E A  +GPY+T+ GSP+S
Sbjct: 522 IGVQGFADALQMLKIPFEDQKALRLNELIFETIYHAAMEASMEQAKVEGPYETFPGSPLS 581

Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
           +G+ Q+D+W   P +D +DW  L+   + YG +
Sbjct: 582 KGLFQFDLWNKKPCSDRYDWEQLRKDVIQYGAR 614



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW  I++SQ ETGTPYMLYKDACNRKSNQQNL  I+
Sbjct: 407 LWGQIIESQNETGTPYMLYKDACNRKSNQQNLGTIK 442



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++K++ Q ++V  +L N  +K  G    ++++  +++I+KN D + S I+YDRD+NY++F
Sbjct: 106 HKKTSSQFIDVASKLRNFKDK-IGRDAALLAEDVFDVIVKNQDLIQSRIVYDRDYNYDYF 164

Query: 768 GFK 770
           GF+
Sbjct: 165 GFR 167


>gi|1710392|sp|P50647.1|RIR1_PLAFG RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase R1 subunit
 gi|349792|gb|AAA29755.1| ribonucleotide reductase large subunit [Plasmodium falciparum]
          Length = 804

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/516 (60%), Positives = 391/516 (75%), Gaps = 12/516 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G++A+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 292 RKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLS++WGE+F+ LY KYE E    + V A+ LWFAIL SQIETG P  LYKD+CN
Sbjct: 352 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K   +NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL  +++   K +NF KL ++ K
Sbjct: 412 AKP-IKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R  ++ + ++ LNK+I
Sbjct: 471 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
           +ET+YY ALE S +   + GPY++Y+GSP SQGILQ+DMW        WDW  LK KIAK
Sbjct: 531 YETMYYAALEMSVD-WLQSGPYESYQGSPGSQGILQFDMWNAKVDNKYWDWDELKLKIAK 589

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RN LL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 590 TGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 649

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD++MK QLI +NGSIQ I  IP  LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 650 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGYFIDQSQSLNI 709

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
           Y+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D     NA+  K+A    
Sbjct: 710 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 769

Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
                S+E IQ +Q  +      + +N E C+   G
Sbjct: 770 ITREVSRETIQLNQRYSKCVSF-KSNNDEQCLMCSG 804



 Score =  280 bits (715), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/238 (60%), Positives = 174/238 (73%), Gaps = 10/238 (4%)

Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++DMW        WDW  LK KIAK G+RN LL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 564 LQFDMWNAKVDNKYWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNI 623

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGSIQ I  IP  LK+LYKTVW
Sbjct: 624 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVW 683

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQSLNIY+ +  +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 684 EIKQKNIIDMAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 743

Query: 948 ANAIQFTIDK------TKMANAMASKDTR--SQEEIQADQEQAMAAMICRRDNKEDCL 997
            +AI+FT+D        K+ NA   + TR  S+E IQ +Q  +      + +N E CL
Sbjct: 744 TDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSF-KSNNDEQCL 800



 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 72/87 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G++A+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ +  W+LMC
Sbjct: 292 RKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GLS++WGE+F+ LY KYE E +
Sbjct: 352 PNECPGLSETWGEEFEKLYTKYEEENM 378



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 2/93 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R  ++ + ++ LNK+I+ET+YY ALE S +   + GPY++Y+GSP S
Sbjct: 502 IGVQGLADTFMLLRYLYESDAAKELNKRIYETMYYAALEMSVD-WLQSGPYESYQGSPGS 560

Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW        WDW  LK+     GL+
Sbjct: 561 QGILQFDMWNAKVDNKYWDWDELKLKIAKTGLR 593



 Score = 47.0 bits (110), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRK 710
           LWFAIL SQIETG P  LYKD+CN K
Sbjct: 388 LWFAILQSQIETGVPIYLYKDSCNAK 413



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+QG++   M+    T   D  A +  A +      F+IL ++I T        D  ++ 
Sbjct: 39  VTQGVIN-GMYSSIKTCELDELAAQTCAYMATTHPDFSILAARITT--------DNLHKN 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           ++    EV E LY   +   G    +IS + Y+ I+ +  RLN  I Y   FNY++FGFK
Sbjct: 90  TSDDVAEVAEALYTYKDGR-GRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFK 148


>gi|398018021|ref|XP_003862197.1| ribonucleoside-diphosphate reductase large chain, putative
           [Leishmania donovani]
 gi|322500426|emb|CBZ35503.1| ribonucleoside-diphosphate reductase large chain, putative
           [Leishmania donovani]
          Length = 799

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/505 (59%), Positives = 391/505 (77%), Gaps = 14/505 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD +GE+F+ LY++YE+EG+ ++ + A+++WFAIL+SQIETG P++LYKDACN
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEGRGVKTIQAQEVWFAILESQIETGGPFVLYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS  E AVCNLASIAL  +++   + +N   L  V K
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYTSPQETAVCNLASIALPRFVDVEKREFNHQLLYTVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVE AR SNMR+RPIG+GVQGLAD FI MRLPF   E++ +N +I
Sbjct: 483 QITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FETIY+ A+E+S E+A  DGPY+T+ GSP S+GILQ+DMW    P +  WDWA+LKEK+ 
Sbjct: 543 FETIYFAAVESSMELAKEDGPYETFTGSPASEGILQFDMWKNARPNSGRWDWASLKEKVM 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL+  G
Sbjct: 603 QVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++M++++I  NGSI  I G+P  L++LY+TVWEIPQ+ ++DMA DRG +IDQSQSLN
Sbjct: 663 LWNESMRNEIISYNGSILTINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      +++SM F+ W+ GLKTG+YYLRTK AA+AI+FT+D  +M            
Sbjct: 723 LFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKAAADAIKFTVDAKRM------------ 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCI 593
           +EIQ  +         R    E+C+
Sbjct: 771 KEIQERENSQQTMSSHRASQPEECL 795



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 165/231 (71%), Gaps = 14/231 (6%)

Query: 769 FKYDMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW    P +  WDWA+LKEK+ + G+RNSLL+APMPTAST+QILGNNE FEP+TSN
Sbjct: 577 LQFDMWKNARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSN 636

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEF VVN +L+ DL+  GLW+++M++++I  NGSI  I G+P  L++LY+TV
Sbjct: 637 IYVRRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILTINGMPDDLRELYRTV 696

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEIPQ+ ++DMA DRG +IDQSQSLN+++      +++SM F+ W+ GLKTG+YYLRTK 
Sbjct: 697 WEIPQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYCWEAGLKTGVYYLRTKA 756

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           AA+AI+FT+D  +M            +EIQ  +         R    E+CL
Sbjct: 757 AADAIKFTVDAKRM------------KEIQERENSQQTMSSHRASQPEECL 795



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +GE+F+ LY++YE+EG
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEG 388



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 2/99 (2%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD FI MRLPF   E++ +N +IFETIY+ A+E+S E+A  DGPY+T+ 
Sbjct: 509 NRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIYFAAVESSMELAKEDGPYETFT 568

Query: 648 GSPVSQGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+DMW    P +  WDWA+LK   +  G++
Sbjct: 569 GSPASEGILQFDMWKNARPNSGRWDWASLKEKVMQVGMR 607



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++WFAIL+SQIETG P++LYKDACN KSNQ+NL  I+
Sbjct: 398 EVWFAILESQIETGGPFVLYKDACNSKSNQKNLGTIK 434



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 40/69 (57%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L   + ++++N+  LE    L++ V  +T    P+I+D  +E++ ++   L S I Y RD
Sbjct: 86  LCTTSLHKQTNESLLETFRLLHDHVTVQTNRPAPLIADDVWEVMQQHHKELQSMIDYSRD 145

Query: 762 FNYNFFGFK 770
            N+ FFG+K
Sbjct: 146 LNFEFFGYK 154


>gi|85817070|gb|EAQ38254.1| ribonucleoside-diphosphate reductase large chain [Dokdonia
           donghaensis MED134]
          Length = 874

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/532 (57%), Positives = 398/532 (74%), Gaps = 18/532 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DIFDFL+LKKN G EE RARDLFY +WI D FM+RV+ D +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L +  GE+F+ LY KYE E +  R + AR+LW  I++SQIETGTPYMLYKDA N
Sbjct: 352 PNECPDLFNVHGEEFEALYTKYEQEERGRRTIKARELWEKIMESQIETGTPYMLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS+DEVAVCNLASIAL M++   +  ++  +L ++  
Sbjct: 412 RKSNQKNLGTIRSSNLCTEILEYTSEDEVAVCNLASIALPMFVK--NGAFDHQELYNITV 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             TKNLNK+ID N+YPV EA NSNMRHRPIG+GVQGLAD FI++RLPF  +E++ LN++I
Sbjct: 470 RATKNLNKVIDRNYYPVIEAENSNMRHRPIGLGVQGLADTFIKLRLPFTSDEAKKLNQEI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEKI 387
           FET+Y+ A+ AS ++A  +GPYQ++EGSP+SQG  QY++W +   +L   WDWA+L++++
Sbjct: 530 FETLYFAAVTASKDMAKVEGPYQSFEGSPISQGEFQYNLWNIKDEELSGRWDWASLRKEV 589

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HGVRNSLL+APMPTAST+QILGNNE+FEPYTSNIY+RRVLSGEF VVN HLL DLV L
Sbjct: 590 MEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTSNIYTRRVLSGEFIVVNKHLLEDLVAL 649

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
            LW+D++K  ++  NGSIQ I+ IP  LK+LYKTVWE+  K ++DM+  RG FIDQSQSL
Sbjct: 650 NLWNDDLKAAIMRANGSIQGIDVIPADLKELYKTVWEMSMKDIIDMSRQRGYFIDQSQSL 709

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N+AK++SMHF+ W+ GLKTGMYYLRTK A +A +FT+   K    + +  A  
Sbjct: 710 NLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTKSAVDAKKFTLSAKKKEAPVTAPTAPK 769

Query: 568 QEEIQADQEQAMAAMICRRD----------NKEDCIG--VQGLADLFIQMRL 607
           Q ++ A   Q + A                +K D I    Q +AD+ +QM L
Sbjct: 770 Q-QVAARAAQTLTATQAPAPAPIPAPQAEISKVDAIAQHAQNVADMQVQMSL 820



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/218 (56%), Positives = 166/218 (76%), Gaps = 4/218 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F+Y++W +   +L   WDWA+L++++ +HGVRNSLL+APMPTAST+QILGNNE+FEPYTS
Sbjct: 564 FQYNLWNIKDEELSGRWDWASLRKEVMEHGVRNSLLVAPMPTASTSQILGNNEAFEPYTS 623

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGEF VVN HLL DLV L LW+D++K  ++  NGSIQ I+ IP  LK+LYKT
Sbjct: 624 NIYTRRVLSGEFIVVNKHLLEDLVALNLWNDDLKAAIMRANGSIQGIDVIPADLKELYKT 683

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWE+  K ++DM+  RG FIDQSQSLN++M   N+AK++SMHF+ W+ GLKTGMYYLRTK
Sbjct: 684 VWEMSMKDIIDMSRQRGYFIDQSQSLNLFMEGANFAKLTSMHFYAWQSGLKTGMYYLRTK 743

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAM 983
            A +A +FT+   K   A  +  T  ++++ A   Q +
Sbjct: 744 SAVDAKKFTLS-AKKKEAPVTAPTAPKQQVAARAAQTL 780



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DIFDFL+LKKN G EE RARDLFY +WI D FM+RV+ D +W+LMC
Sbjct: 292 RKGSFAIYMEPWHADIFDFLDLKKNHGAEEMRARDLFYAMWISDLFMKRVQEDGKWTLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN C  L +  GE+F+ LY KYE E
Sbjct: 352 PNECPDLFNVHGEEFEALYTKYEQE 376



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 73/95 (76%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD FI++RLPF  +E++ LN++IFET+Y+ A+ AS ++A  +GPYQ++EGSP+S
Sbjct: 501 LGVQGLADTFIKLRLPFTSDEAKKLNQEIFETLYFAAVTASKDMAKVEGPYQSFEGSPIS 560

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  QY++W +   +L   WDWA+L+   + +G++
Sbjct: 561 QGEFQYNLWNIKDEELSGRWDWASLRKEVMEHGVR 595



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EV+ +LY  VN  TG + PM++D+ Y++IM N D L+S IIY+RDF Y++FGFK
Sbjct: 95  EVMTDLYQYVNPRTGKKAPMVADEVYKVIMDNKDELDSTIIYNRDFGYDYFGFK 148



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LW  I++SQIETGTPYMLYKDA NRKSNQ+NL  I
Sbjct: 387 ELWEKIMESQIETGTPYMLYKDAANRKSNQKNLGTI 422


>gi|157871642|ref|XP_001684370.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania major strain Friedlin]
 gi|68127439|emb|CAJ05210.1| putative ribonucleoside-diphosphate reductase large chain
           [Leishmania major strain Friedlin]
          Length = 799

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 297/505 (58%), Positives = 389/505 (77%), Gaps = 14/505 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNTC GLSD +GE+F+ LY++YE+EG+ ++ + A+++WFAIL+SQIETG P++LYKDACN
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEGRGVKTIQAQEVWFAILESQIETGGPFILYKDACN 422

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEIVEYTS  E AVCNLASIAL  ++    +  N   L  V K
Sbjct: 423 SKSNQKNLGTIKCSNLCTEIVEYTSSQETAVCNLASIALPRFVEVEKRELNHQLLYTVTK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T+NLN++ID N+YPVE AR SNMR+RPIG+GVQGLAD FI MRLPF   E++ +N +I
Sbjct: 483 QITRNLNRVIDRNYYPVETARRSNMRNRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FETIY+ A+E+S E+A  +GPY+T+ GSP S+GILQ+DMW    P +  WDWA+LKEK+ 
Sbjct: 543 FETIYFAAVESSMELAKEEGPYETFAGSPASEGILQFDMWKNARPNSGRWDWASLKEKVM 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+APMPTAST+QILGNNE FEP+TSNIY RRVLSGEF VVN +L+ DL+  G
Sbjct: 603 QVGMRNSLLVAPMPTASTSQILGNNECFEPFTSNIYVRRVLSGEFPVVNKYLVMDLIARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++M++++I  NGSI  I G+P  L++LY+TVWEIPQ+ ++DMA DRG +IDQSQSLN
Sbjct: 663 LWNESMRNEIISYNGSILAINGMPDDLRELYRTVWEIPQRKLIDMARDRGQYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      +++SM F+ W+ GLKTG+YYLRTK AA+AI+FT+D  +M            
Sbjct: 723 LFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKAAADAIKFTVDAKRM------------ 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCI 593
           +EIQ  +         R    E+C+
Sbjct: 771 KEIQERETSQQTMSSHRASQPEECL 795



 Score =  252 bits (643), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/231 (52%), Positives = 165/231 (71%), Gaps = 14/231 (6%)

Query: 769 FKYDMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW    P +  WDWA+LKEK+ + G+RNSLL+APMPTAST+QILGNNE FEP+TSN
Sbjct: 577 LQFDMWKNARPNSGRWDWASLKEKVMQVGMRNSLLVAPMPTASTSQILGNNECFEPFTSN 636

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RRVLSGEF VVN +L+ DL+  GLW+++M++++I  NGSI  I G+P  L++LY+TV
Sbjct: 637 IYVRRVLSGEFPVVNKYLVMDLIARGLWNESMRNEIISYNGSILAINGMPDDLRELYRTV 696

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WEIPQ+ ++DMA DRG +IDQSQSLN+++      +++SM F+ W+ GLKTG+YYLRTK 
Sbjct: 697 WEIPQRKLIDMARDRGQYIDQSQSLNLFLQSPTSGQITSMLFYSWEAGLKTGVYYLRTKA 756

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
           AA+AI+FT+D  +M            +EIQ  +         R    E+CL
Sbjct: 757 AADAIKFTVDAKRM------------KEIQERETSQQTMSSHRASQPEECL 795



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 73/86 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH D+F FL LK+NTGK++ RARDLFY LWIPD FMRRV+S+ +W+LM 
Sbjct: 303 RKGAFAVYLEPWHADVFGFLLLKRNTGKDDQRARDLFYALWIPDLFMRRVKSEGKWTLMD 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +GE+F+ LY++YE+EG
Sbjct: 363 PNTCPGLSDCYGEEFERLYERYESEG 388



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 2/99 (2%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD FI MRLPF   E++ +N +IFETIY+ A+E+S E+A  +GPY+T+ 
Sbjct: 509 NRPIGLGVQGLADAFILMRLPFVSAEAQRVNAEIFETIYFAAVESSMELAKEEGPYETFA 568

Query: 648 GSPVSQGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           GSP S+GILQ+DMW    P +  WDWA+LK   +  G++
Sbjct: 569 GSPASEGILQFDMWKNARPNSGRWDWASLKEKVMQVGMR 607



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++WFAIL+SQIETG P++LYKDACN KSNQ+NL  I+
Sbjct: 398 EVWFAILESQIETGGPFILYKDACNSKSNQKNLGTIK 434



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L   + ++++N+  LE    L++ V  +T    P+I+D  +E++ ++   L   I Y RD
Sbjct: 86  LCTTSLHKQTNESLLETFRLLHSHVTVQTNRPAPLIADDVWEVMKQHHAELQGMIDYSRD 145

Query: 762 FNYNFFGFK 770
            N+ FFG+K
Sbjct: 146 LNFEFFGYK 154


>gi|150864273|ref|XP_001383025.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
 gi|149385529|gb|ABN64996.2| ribonucleoside-diphosphate reductase alpha subunit [Scheffersomyces
           stipitis CBS 6054]
          Length = 891

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 288/477 (60%), Positives = 378/477 (79%), Gaps = 9/477 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIF  L++KKN GKEE RARDLF+ LWIPD FM++V+ D  W L  
Sbjct: 327 RPGAFAIYIEPWHADIFSVLDMKKNHGKEELRARDLFFALWIPDLFMQKVKDDEDWCLFS 386

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++F DLY +YEAEG+    V A KLW AIL+SQ ETG PYMLYKD+CN
Sbjct: 387 PDEAPGLADCYGDEFVDLYNQYEAEGRARTVVKAHKLWLAILESQTETGGPYMLYKDSCN 446

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA--DKT------YNF 262
           RKSNQ+NLGTIK SNLC EIVEY S +E AVCNL S+AL  +I     D +      ++F
Sbjct: 447 RKSNQKNLGTIKSSNLCCEIVEYCSSEETAVCNLGSLALPAFIKSVSIDNSDEEVLEFDF 506

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL  + K++T+NLNK+IDV  YPVE  + SNM+HRPI +GVQGLAD+F+++RLPF  +E
Sbjct: 507 EKLHSITKVLTRNLNKVIDVTLYPVESTKVSNMKHRPIALGVQGLADVFLELRLPFSSDE 566

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWA 381
           ++ LN QIFETIY+ A+EAS E+A  +GPY ++EGSP S+GILQ+D+W   P++L+ DW 
Sbjct: 567 AKKLNIQIFETIYHAAVEASVELAMSEGPYNSFEGSPASKGILQFDLWDHKPSELYNDWD 626

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
           +LKE +  HG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRVL+GE+QV N +L+
Sbjct: 627 SLKESVKTHGLRNSLLVAPMPTASTSQILGYNECFEPYTSNLYTRRVLAGEYQVANKYLV 686

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
           +DL++LGLW+  +++++IV+NGSIQ+I  IPQ+LK+LYKTVWEI QK ++DMAADRG FI
Sbjct: 687 KDLIDLGLWNSAVRNKIIVDNGSIQNISSIPQELKELYKTVWEISQKVIIDMAADRGKFI 746

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           DQSQS+NI++    + K++S HF+GW+ GLKTGMYYLRT+ A+ AIQFT++  ++ N
Sbjct: 747 DQSQSMNIHLQNPTFGKLTSCHFYGWQKGLKTGMYYLRTQAASRAIQFTVNNEEIEN 803



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 163/195 (83%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P++L+ DW +LKE +  HG+RNSLL+APMPTAST+QILG NE FEPYTSN+
Sbjct: 609 LQFDLWDHKPSELYNDWDSLKESVKTHGLRNSLLVAPMPTASTSQILGYNECFEPYTSNL 668

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GE+QV N +L++DL++LGLW+  +++++IV+NGSIQ+I  IPQ+LK+LYKTVW
Sbjct: 669 YTRRVLAGEYQVANKYLVKDLIDLGLWNSAVRNKIIVDNGSIQNISSIPQELKELYKTVW 728

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++DMAADRG FIDQSQS+NI++    + K++S HF+GW+ GLKTGMYYLRT+ A
Sbjct: 729 EISQKVIIDMAADRGKFIDQSQSMNIHLQNPTFGKLTSCHFYGWQKGLKTGMYYLRTQAA 788

Query: 948 ANAIQFTIDKTKMAN 962
           + AIQFT++  ++ N
Sbjct: 789 SRAIQFTVNNEEIEN 803



 Score =  129 bits (325), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIF  L++KKN GKEE RARDLF+ LWIPD FM++V+ D  W L  
Sbjct: 327 RPGAFAIYIEPWHADIFSVLDMKKNHGKEELRARDLFFALWIPDLFMQKVKDDEDWCLFS 386

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL+D +G++F DLY +YEAEG
Sbjct: 387 PDEAPGLADCYGDEFVDLYNQYEAEG 412



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 73/94 (77%), Gaps = 1/94 (1%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD+F+++RLPF  +E++ LN QIFETIY+ A+EAS E+A  +GPY ++EGSP 
Sbjct: 545 ALGVQGLADVFLELRLPFSSDEAKKLNIQIFETIYHAAVEASVELAMSEGPYNSFEGSPA 604

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLK 684
           S+GILQ+D+W   P++L+ DW +LK     +GL+
Sbjct: 605 SKGILQFDLWDHKPSELYNDWDSLKESVKTHGLR 638



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D +G    DL++   A  +   +V   KLW AIL+SQ ETG PYMLYKD+CNRKSNQ+NL
Sbjct: 395 DCYGDEFVDLYNQYEAEGRARTVVKAHKLWLAILESQTETGGPYMLYKDSCNRKSNQKNL 454

Query: 717 EVIE 720
             I+
Sbjct: 455 GTIK 458


>gi|294660114|ref|XP_462554.2| DEHA2G23276p [Debaryomyces hansenii CBS767]
 gi|199434472|emb|CAG91065.2| DEHA2G23276p [Debaryomyces hansenii CBS767]
          Length = 861

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 292/464 (62%), Positives = 371/464 (79%), Gaps = 2/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DI   L+LKKN GKEE RARDLFYGLWIPD FM RV+ D  WSL  
Sbjct: 299 RPGAFAIYIEPWHCDIISILDLKKNHGKEEMRARDLFYGLWIPDLFMERVKQDLDWSLFS 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G+ F  LY+KYE  GK IR + A+KLW AIL+ Q ETG PYML+KDACN
Sbjct: 359 PDITPGLSDCYGDAFKTLYEKYEESGKAIRTIKAQKLWRAILECQTETGGPYMLFKDACN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPADKTYNFTKLKDVA 269
            KSNQ+NLGTIK SNLC EI+EY+S +E AVCNL S+AL  +I N  +  Y+F KL  V 
Sbjct: 419 SKSNQRNLGTIKSSNLCCEIIEYSSPEETAVCNLGSLALPSFIKNSNELEYDFDKLHTVT 478

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           K++ KNLNKIID+  YP+E A+ SNMR+RPI +GVQGLADLF+++RLPFD N++++LN Q
Sbjct: 479 KVLAKNLNKIIDITKYPIESAKFSNMRNRPIAVGVQGLADLFLELRLPFDSNQAKVLNTQ 538

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKEKIA 388
           IFETIY+ A+E S E+A +DGPY T++GSP+S+G+ Q+D+W   P+ L+ DW  LK K  
Sbjct: 539 IFETIYHAAVEVSIELAIKDGPYDTFKGSPISEGLFQFDLWNHKPSQLYSDWDELKLKAK 598

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             GVRNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQVVN +L++DL++LG
Sbjct: 599 TLGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYNRRVLSGEFQVVNKYLMKDLIDLG 658

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+ +MK+++I+ NGSIQ+I  IP++LK LYKTVWEI QK ++++AADRG FIDQSQS+N
Sbjct: 659 IWNSSMKNKIILENGSIQNIPSIPKELKQLYKTVWEISQKVIIELAADRGKFIDQSQSMN 718

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           I++ +  + K++S HF+ W+ GLKTGMYYLRT+ A  AIQFT+D
Sbjct: 719 IHLQDPTFGKLTSSHFYAWEKGLKTGMYYLRTQAATRAIQFTVD 762



 Score =  262 bits (669), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 118/189 (62%), Positives = 156/189 (82%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F++D+W   P+ L+ DW  LK K    GVRNSLL+APMPTAST+QILG NE FEPYTSNI
Sbjct: 574 FQFDLWNHKPSQLYSDWDELKLKAKTLGVRNSLLVAPMPTASTSQILGFNECFEPYTSNI 633

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQVVN +L++DL++LG+W+ +MK+++I+ NGSIQ+I  IP++LK LYKTVW
Sbjct: 634 YNRRVLSGEFQVVNKYLMKDLIDLGIWNSSMKNKIILENGSIQNIPSIPKELKQLYKTVW 693

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK ++++AADRG FIDQSQS+NI++ +  + K++S HF+ W+ GLKTGMYYLRT+ A
Sbjct: 694 EISQKVIIELAADRGKFIDQSQSMNIHLQDPTFGKLTSSHFYAWEKGLKTGMYYLRTQAA 753

Query: 948 ANAIQFTID 956
             AIQFT+D
Sbjct: 754 TRAIQFTVD 762



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DI   L+LKKN GKEE RARDLFYGLWIPD FM RV+ D  WSL  
Sbjct: 299 RPGAFAIYIEPWHCDIISILDLKKNHGKEEMRARDLFYGLWIPDLFMERVKQDLDWSLFS 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G+ F  LY+KYE  G
Sbjct: 359 PDITPGLSDCYGDAFKTLYEKYEESG 384



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/189 (36%), Positives = 113/189 (59%), Gaps = 8/189 (4%)

Query: 544 ANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFI 603
           +N +++  DK      + +K+    + I   +    +A      N+   +GVQGLADLF+
Sbjct: 464 SNELEYDFDKLHTVTKVLAKNL--NKIIDITKYPIESAKFSNMRNRPIAVGVQGLADLFL 521

Query: 604 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 663
           ++RLPFD N++++LN QIFETIY+ A+E S E+A +DGPY T++GSP+S+G+ Q+D+W  
Sbjct: 522 ELRLPFDSNQAKVLNTQIFETIYHAAVEVSIELAIKDGPYDTFKGSPISEGLFQFDLWNH 581

Query: 664 TPTDLW-DWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSNQQNLEVI 719
            P+ L+ DW  LK+ A   G++   ++L + + T  T  +L  + C     SN  N  V+
Sbjct: 582 KPSQLYSDWDELKLKAKTLGVR--NSLLVAPMPTASTSQILGFNECFEPYTSNIYNRRVL 639

Query: 720 EELYNMVNK 728
              + +VNK
Sbjct: 640 SGEFQVVNK 648



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K +  +   KLW AIL+ Q ETG PYML+KDACN KSNQ+NL  I+
Sbjct: 385 KAIRTIKAQKLWRAILECQTETGGPYMLFKDACNSKSNQRNLGTIK 430


>gi|344303891|gb|EGW34140.1| hypothetical protein SPAPADRAFT_49208 [Spathaspora passalidarum
           NRRL Y-27907]
          Length = 843

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 288/470 (61%), Positives = 373/470 (79%), Gaps = 8/470 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH DIFD L+++KN G EE R RDLFYGLW+PD FM+RV+ D +WSL  
Sbjct: 302 RPGAFAMYIEPWHADIFDILDMRKNHGNEEQRTRDLFYGLWVPDLFMKRVKEDKEWSLFS 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F +LY+KYE EG  I  + A KLW AIL+SQ ETG PYMLYKDACN
Sbjct: 362 PDEAPGLSDVYGDEFVELYEKYEREGLAISTIKAHKLWLAILESQTETGVPYMLYKDACN 421

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK-------TYNFT 263
            KSNQ+NLGTIKCSNLC EI++Y+S +E AVCN+ S+AL  Y+  A+         ++F 
Sbjct: 422 SKSNQKNLGTIKCSNLCCEIIQYSSPEETAVCNIGSLALPSYLKTAENRAGEEVLEFDFV 481

Query: 264 KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNES 323
           KL  VAK++ KNLNK+IDV  YPV  A  SN +HRPI IGVQGLADLF+++RLPFD  ++
Sbjct: 482 KLHKVAKVLVKNLNKVIDVTRYPVPSAELSNKKHRPIAIGVQGLADLFLELRLPFDSPQA 541

Query: 324 RLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAA 382
           + LN QIFETIY+ A+E S E+A ++GPY+++EGSP SQG+LQ+D+W   P+ L+D W  
Sbjct: 542 KHLNMQIFETIYHAAIEQSTELAFQEGPYESFEGSPASQGLLQFDLWNHKPSPLYDDWDT 601

Query: 383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           LKE I   G+RNSLL+ PMPTAST+QILG NE FEPYTSNIY+RRVLSGEFQVVN +L++
Sbjct: 602 LKENIKNFGLRNSLLVGPMPTASTSQILGFNECFEPYTSNIYTRRVLSGEFQVVNKYLIK 661

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
           DL++LG+W+ +M++++I+ NGSIQ+I  IPQ++KDLYKTVWEI Q+ ++DMAADRG F+D
Sbjct: 662 DLIDLGIWNSSMRNKIIMENGSIQNIASIPQEIKDLYKTVWEISQRVIIDMAADRGKFVD 721

Query: 503 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           QSQS+NIY+ +  + K++S HF+ W+ GLKTGMYYLRT+ A  AIQFT+D
Sbjct: 722 QSQSMNIYLKQPTFGKLTSCHFYAWEKGLKTGMYYLRTQAATRAIQFTVD 771



 Score =  267 bits (683), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/205 (59%), Positives = 162/205 (79%), Gaps = 4/205 (1%)

Query: 769 FKYDMWGVTPTDLWD-WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P+ L+D W  LKE I   G+RNSLL+ PMPTAST+QILG NE FEPYTSNI
Sbjct: 583 LQFDLWNHKPSPLYDDWDTLKENIKNFGLRNSLLVGPMPTASTSQILGFNECFEPYTSNI 642

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQVVN +L++DL++LG+W+ +M++++I+ NGSIQ+I  IPQ++KDLYKTVW
Sbjct: 643 YTRRVLSGEFQVVNKYLIKDLIDLGIWNSSMRNKIIMENGSIQNIASIPQEIKDLYKTVW 702

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+ ++DMAADRG F+DQSQS+NIY+ +  + K++S HF+ W+ GLKTGMYYLRT+ A
Sbjct: 703 EISQRVIIDMAADRGKFVDQSQSMNIYLKQPTFGKLTSCHFYAWEKGLKTGMYYLRTQAA 762

Query: 948 ANAIQFTID---KTKMANAMASKDT 969
             AIQFT+D    +K+ N   S  T
Sbjct: 763 TRAIQFTVDAEEASKVDNVEVSPST 787



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH DIFD L+++KN G EE R RDLFYGLW+PD FM+RV+ D +WSL  
Sbjct: 302 RPGAFAMYIEPWHADIFDILDMRKNHGNEEQRTRDLFYGLWVPDLFMKRVKEDKEWSLFS 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +G++F +LY+KYE EGL
Sbjct: 362 PDEAPGLSDVYGDEFVELYEKYEREGL 388



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 78/106 (73%), Gaps = 1/106 (0%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A +  + ++   IGVQGLADLF+++RLPFD  +++ LN QIFETIY+ A+E S E+A +
Sbjct: 507 SAELSNKKHRPIAIGVQGLADLFLELRLPFDSPQAKHLNMQIFETIYHAAIEQSTELAFQ 566

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLK 684
           +GPY+++EGSP SQG+LQ+D+W   P+ L+ DW  LK     +GL+
Sbjct: 567 EGPYESFEGSPASQGLLQFDLWNHKPSPLYDDWDTLKENIKNFGLR 612



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLAL--VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D++G    +L++    + LA+  +   KLW AIL+SQ ETG PYMLYKDACN KSNQ+NL
Sbjct: 370 DVYGDEFVELYEKYEREGLAISTIKAHKLWLAILESQTETGVPYMLYKDACNSKSNQKNL 429

Query: 717 EVIE 720
             I+
Sbjct: 430 GTIK 433


>gi|241958750|ref|XP_002422094.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
 gi|223645439|emb|CAX40095.1| ribonucleoside-diphosphate reductase, large subunit, putative
           [Candida dubliniensis CD36]
          Length = 816

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 298/527 (56%), Positives = 388/527 (73%), Gaps = 21/527 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSDWTLFS 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE+F+ LY KYE+EG F  +V A KLW AIL SQ ETG PYMLYKDACN
Sbjct: 351 PNEALGLSDVYGEEFEKLYCKYESEG-FGTKVSAHKLWLAILQSQTETGGPYMLYKDACN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+N+GTIK SNLC EIVEY+S +E AVCNLAS+AL  Y+   +    ++F KL  V
Sbjct: 410 TKSNQKNIGTIKSSNLCCEIVEYSSPEETAVCNLASLALPTYLKTTEDAIAFDFEKLHSV 469

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++T+NLNK+IDV  YPV+ A  SN RHRPI +GVQGLADLF ++RLPFD   ++ LN 
Sbjct: 470 TKVLTRNLNKVIDVTKYPVKTAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNI 529

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ ALEAS E+A ++GPY+T++GSP S GILQ+DMW   P+ ++DW ALK+ I 
Sbjct: 530 QIFETIYHAALEASVELAMKEGPYETFQGSPASNGILQFDMWNHKPSPMYDWNALKDNIQ 589

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRVL+GE+Q+VN +L++DL++LG
Sbjct: 590 NFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLG 649

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD  M++++I+ NGSIQ I  IP ++K LYKTVWE+ QK ++DMAADRG F+DQSQS+N
Sbjct: 650 IWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMN 709

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT---KMANAMASKDA 565
           I++      K++S HF+ W+ GLKTGMYYLRT+ A+ AIQFT+D +   K  N +  K  
Sbjct: 710 IHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVDASEAEKAGNKVPQKSL 769

Query: 566 RSQEEIQADQEQAMA---------------AMICRRDNKEDCIGVQG 597
           + ++ ++    +  A                + C  ++ E C    G
Sbjct: 770 KRKKYMEPQPRKKTAYSTPDSELYDIHDSTPITCNIEDSESCQSCSG 816



 Score =  260 bits (664), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 165/219 (75%), Gaps = 3/219 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P+ ++DW ALK+ I   G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 566 LQFDMWNHKPSPMYDWNALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GE+Q+VN +L++DL++LG+WD  M++++I+ NGSIQ I  IP ++K LYKTVWE
Sbjct: 626 NRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQKIPNIPDEIKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADRG F+DQSQS+NI++      K++S HF+ W+ GLKTGMYYLRT+ A+
Sbjct: 686 LSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAAS 745

Query: 949 NAIQFTIDKT---KMANAMASKDTRSQEEIQADQEQAMA 984
            AIQFT+D +   K  N +  K  + ++ ++    +  A
Sbjct: 746 RAIQFTVDASEAEKAGNKVPQKSLKRKKYMEPQPRKKTA 784



 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKDNSDWTLFS 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN   GLSD +GE+F+ LY KYE+EG 
Sbjct: 351 PNEALGLSDVYGEEFEKLYCKYESEGF 377



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 9/195 (4%)

Query: 537 YLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           YL+T    +AI F  +K      + +++    + I   +     A    + ++   +GVQ
Sbjct: 451 YLKT--TEDAIAFDFEKLHSVTKVLTRNL--NKVIDVTKYPVKTAEYSNKRHRPIALGVQ 506

Query: 597 GLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL 656
           GLADLF ++RLPFD   ++ LN QIFETIY+ ALEAS E+A ++GPY+T++GSP S GIL
Sbjct: 507 GLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASNGIL 566

Query: 657 QYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSNQ 713
           Q+DMW   P+ ++DW ALK     +GL+   ++L + + T  T  +L  + C     SN 
Sbjct: 567 QFDMWNHKPSPMYDWNALKDNIQNFGLR--NSLLVAPMPTASTSQILGFNECFEPYTSNL 624

Query: 714 QNLEVIEELYNMVNK 728
            N  V+   Y +VNK
Sbjct: 625 YNRRVLAGEYQIVNK 639



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 31/41 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW AIL SQ ETG PYMLYKDACN KSNQ+N+  I+
Sbjct: 381 VSAHKLWLAILQSQTETGGPYMLYKDACNTKSNQKNIGTIK 421


>gi|323308679|gb|EGA61920.1| Rnr3p [Saccharomyces cerevisiae FostersO]
          Length = 887

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 301/520 (57%), Positives = 394/520 (75%), Gaps = 17/520 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM-LYKDAC 209
           P+   GL D WG++F++LY +YE EG+  + + A+KLW+AIL +Q ETG  +   YKDAC
Sbjct: 369 PSXAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGNTFPWFYKDAC 427

Query: 210 NRKS-NQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTK 264
            ++  NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL  ++  ++     +YNF +
Sbjct: 428 KQEGQNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFER 487

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L ++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD  + +RLPF+  E++
Sbjct: 488 LHEIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTXMMLRLPFESEEAQ 547

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 384
            LNKQIFETIY+  LEASCE+A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L+
Sbjct: 548 TLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLR 607

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           + I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDL
Sbjct: 608 KDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDL 667

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           V+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS
Sbjct: 668 VDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQS 727

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
            SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+  A+  
Sbjct: 728 HSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHI 786

Query: 565 ARSQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
           A   E           +  +++A +A+    DN++D   V
Sbjct: 787 ASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDASPV 826



 Score =  276 bits (706), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 588 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 647

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 648 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 707

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 708 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 767

Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AIQFTID+    + A  +AS     +     +  +  +++A +A+    DN++D 
Sbjct: 768 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDA 823



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH DIFDF++++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  
Sbjct: 309 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GL D WG++F++LY +YE EG
Sbjct: 369 PSXAPGLDDVWGDEFEELYTRYEREG 394



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 69/93 (74%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD  + +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 524 ALGVQGLADTXMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 583

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 584 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 616



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 55  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 105

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 106 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 165



 Score = 40.8 bits (94), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 684 KLWFAILDSQIETGTPYM-LYKDACNRKS-NQQNLEVIE 720
           KLW+AIL +Q ETG  +   YKDAC ++  NQQNL  I+
Sbjct: 403 KLWYAILQAQTETGNTFPWFYKDACKQEGQNQQNLGTIK 441


>gi|68490738|ref|XP_710811.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
 gi|68490761|ref|XP_710800.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432045|gb|EAK91552.1| hypothetical protein CaO19.5845 [Candida albicans SC5314]
 gi|46432057|gb|EAK91563.1| hypothetical protein CaO19.13267 [Candida albicans SC5314]
          Length = 816

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 293/475 (61%), Positives = 375/475 (78%), Gaps = 4/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE+F+ LY KYE+EG F  +V A KLW AIL SQ ETG PYMLYKDACN
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEG-FGTKVSAHKLWLAILHSQTETGGPYMLYKDACN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+N+GTIK SNLC EIVEY+S  E AVCNLAS+AL  Y+   +    ++F KL  V
Sbjct: 410 TKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSV 469

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++T+NLN++IDV  YPVE A  SN RHRPI +GVQGLADLF ++RLPFD   ++ LN 
Sbjct: 470 TKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNI 529

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ ALEAS E+A ++GPY+T++GSP S+GILQ+DMW   P+ ++DW ALK+ I 
Sbjct: 530 QIFETIYHAALEASVELAMKEGPYETFQGSPASKGILQFDMWKHKPSPMYDWHALKDNIQ 589

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRVL+GE+Q+VN +L++DL++LG
Sbjct: 590 NFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLAGEYQIVNKYLIKDLMDLG 649

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD  M++++I+ NGSIQ+I  IP ++K LYKTVWE+ QK ++DMAADRG F+DQSQS+N
Sbjct: 650 IWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWELSQKVIIDMAADRGKFVDQSQSMN 709

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           I++      K++S HF+ W+ GLKTGMYYLRT+ A+ AIQFT+D  K A  + +K
Sbjct: 710 IHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAASRAIQFTVD-AKEAEKVGTK 763



 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 115/199 (57%), Positives = 159/199 (79%), Gaps = 1/199 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P+ ++DW ALK+ I   G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 566 LQFDMWKHKPSPMYDWHALKDNIQNFGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLY 625

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GE+Q+VN +L++DL++LG+WD  M++++I+ NGSIQ+I  IP ++K LYKTVWE
Sbjct: 626 NRRVLAGEYQIVNKYLIKDLMDLGIWDSAMRNKIIMENGSIQNIPNIPDEIKQLYKTVWE 685

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADRG F+DQSQS+NI++      K++S HF+ W+ GLKTGMYYLRT+ A+
Sbjct: 686 LSQKVIIDMAADRGKFVDQSQSMNIHLRNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAAS 745

Query: 949 NAIQFTIDKTKMANAMASK 967
            AIQFT+D  K A  + +K
Sbjct: 746 RAIQFTVD-AKEAEKVGTK 763



 Score =  139 bits (350), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN   GLSD +GE+F+ LY KYE+EG 
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGF 377



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 9/195 (4%)

Query: 537 YLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           YL+T    +AI F  +K      + +++      I   +     A    + ++   +GVQ
Sbjct: 451 YLKT--TEDAIGFDFEKLHSVTKVLTRNL--NRVIDVTKYPVETAEYSNKRHRPIALGVQ 506

Query: 597 GLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL 656
           GLADLF ++RLPFD   ++ LN QIFETIY+ ALEAS E+A ++GPY+T++GSP S+GIL
Sbjct: 507 GLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYETFQGSPASKGIL 566

Query: 657 QYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSNQ 713
           Q+DMW   P+ ++DW ALK     +GL+   ++L + + T  T  +L  + C     SN 
Sbjct: 567 QFDMWKHKPSPMYDWHALKDNIQNFGLR--NSLLVAPMPTASTSQILGFNECFEPYTSNL 624

Query: 714 QNLEVIEELYNMVNK 728
            N  V+   Y +VNK
Sbjct: 625 YNRRVLAGEYQIVNK 639



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 31/41 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW AIL SQ ETG PYMLYKDACN KSNQ+N+  I+
Sbjct: 381 VSAHKLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIK 421


>gi|347482412|gb|AEO98353.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 203]
          Length = 746

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 286/444 (64%), Positives = 360/444 (81%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIFDFLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFDFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE++GK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESDGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D +++   L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK--DGSFDHQHLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD +++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSHDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+S+G  Q+DMW VTP+D W+W  L+  + KH
Sbjct: 529 FETMYFAAMTASCDLAKTKGKYSTYEGSPLSKGKFQFDMWNVTPSDRWNWDTLRSNVKKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL+APMPTASTAQILGNNE FEPYTSN+YSRRVLSGEF VVN HL++DL + GLW
Sbjct: 589 GARNSLLLAPMPTASTAQILGNNECFEPYTSNLYSRRVLSGEFPVVNTHLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DM+ADRGAFI QSQS N++
Sbjct: 649 GDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMSADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 140/170 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW VTP+D W+W  L+  + KHG RNSLL+APMPTASTAQILGNNE FEPYTSN+Y
Sbjct: 563 FQFDMWNVTPSDRWNWDTLRSNVKKHGARNSLLLAPMPTASTAQILGNNECFEPYTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN HL++DL + GLW D+MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNTHLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DM+ADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMSADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIFDFLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFDFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE++G
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESDG 376



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 67/83 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD +++R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKMAFDSHDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G  Q+DMW VTP+D W+W  L+
Sbjct: 560 KGKFQFDMWNVTPSDRWNWDTLR 582



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESDGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V+E LYN VN +TG  +P+I+D   E I  NA+  +  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMESLYNYVNTKTGQWSPLIADDIIECIRSNAEVFDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|302793891|ref|XP_002978710.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
 gi|300153519|gb|EFJ20157.1| hypothetical protein SELMODRAFT_109545 [Selaginella moellendorffii]
          Length = 786

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 297/455 (65%), Positives = 363/455 (79%), Gaps = 4/455 (0%)

Query: 105 DIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEK 164
           D+FD+L+LKKN GKEE RARDLFYGLWIPD FM RV S++ WSL CPN   GL+D WGE+
Sbjct: 295 DVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEE 354

Query: 165 FDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS 224
           F+ LY +YE EG+  R + A+KLWFAIL+SQ+ETG PYM++KD CNRKSNQQNLGTIKCS
Sbjct: 355 FESLYTRYEREGRAKRSLSAQKLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIKCS 414

Query: 225 NLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD---VAKIVTKNLNKIID 281
           NLCTEIVEYTS  E AVCNLASIAL  ++       + TKL D   V  +VT+NLNKIID
Sbjct: 415 NLCTEIVEYTSPSETAVCNLASIALPRFVR-EQGINSETKLVDCFQVTTVVTENLNKIID 473

Query: 282 VNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEA 341
           +N+YPV+ A+ SN+RHRPIGIGVQGLAD FI + LPFD  E+R LNK IFETIYY A++ 
Sbjct: 474 INYYPVDTAKRSNLRHRPIGIGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKT 533

Query: 342 SCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 401
           S  +A   G Y+TY GSPVS+G+ Q DMW V P+  WDW ALKE +A+HGVRNSLL+APM
Sbjct: 534 SSVLAELYGVYETYPGSPVSKGVFQPDMWNVIPSGRWDWPALKEMVARHGVRNSLLVAPM 593

Query: 402 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVN 461
           PTAST+QILGNNE FEPYTSNIY+RRVLSGEF VVN HLL DL +LG+W  ++K++++  
Sbjct: 594 PTASTSQILGNNECFEPYTSNIYTRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAY 653

Query: 462 NGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSS 521
           NGSIQ IEGIP  LK +Y+TVWEI Q+T++DMA +RGA+IDQSQSLNI+M +    K++S
Sbjct: 654 NGSIQSIEGIPDDLKQIYRTVWEIKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTS 713

Query: 522 MHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           +HFH W  GLKTGMYYLR++ AA+AI+FT+D   +
Sbjct: 714 LHFHAWSGGLKTGMYYLRSQAAADAIKFTVDTASL 748



 Score =  282 bits (722), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 125/192 (65%), Positives = 158/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F+ DMW V P+  WDW ALKE +A+HGVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 557 FQPDMWNVIPSGRWDWPALKEMVARHGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 616

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HLL DL +LG+W  ++K++++  NGSIQ IEGIP  LK +Y+TVWE
Sbjct: 617 TRRVLSGEFVVVNKHLLNDLTDLGIWTPDLKNKVMAYNGSIQSIEGIPDDLKQIYRTVWE 676

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++DMA +RGA+IDQSQSLNI+M +    K++S+HFH W  GLKTGMYYLR++ AA
Sbjct: 677 IKQRTIVDMAVERGAYIDQSQSLNIHMEQPTTTKLTSLHFHAWSGGLKTGMYYLRSQAAA 736

Query: 949 NAIQFTIDKTKM 960
           +AI+FT+D   +
Sbjct: 737 DAIKFTVDTASL 748



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/72 (68%), Positives = 58/72 (80%)

Query: 15  DIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEK 74
           D+FD+L+LKKN GKEE RARDLFYGLWIPD FM RV S++ WSL CPN   GL+D WGE+
Sbjct: 295 DVFDWLDLKKNHGKEENRARDLFYGLWIPDLFMERVRSNSDWSLFCPNEAPGLADCWGEE 354

Query: 75  FDDLYKKYEAEG 86
           F+ LY +YE EG
Sbjct: 355 FESLYTRYEREG 366



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 65/92 (70%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + LPFD  E+R LNK IFETIYY A++ S  +A   G Y+TY GSPVS
Sbjct: 494 IGVQGLADAFILLGLPFDSEEARDLNKDIFETIYYHAMKTSSVLAELYGVYETYPGSPVS 553

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+ Q DMW V P+  WDW ALK +   +G++
Sbjct: 554 KGVFQPDMWNVIPSGRWDWPALKEMVARHGVR 585



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 50/63 (79%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++K+ +   E ++E+Y+ V++ +G + P+I++  Y+IIMKNA +L+S IIYDRDF+Y++F
Sbjct: 87  HKKTKKSFSETVKEMYSHVDERSGLKAPLIANDVYDIIMKNAAKLDSEIIYDRDFDYDYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLWFAIL+SQ+ETG PYM++KD CNRKSNQQNL  I+
Sbjct: 376 KLWFAILESQMETGNPYMVFKDTCNRKSNQQNLGTIK 412


>gi|340059001|emb|CCC53372.1| putative ribonucleoside-diphosphate reductase large chain
           [Trypanosoma vivax Y486]
          Length = 799

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 303/505 (60%), Positives = 382/505 (75%), Gaps = 19/505 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFAIYLEPWH DIF F+ LK+NTGKEE RARDLFYGLWIPD FM+RVE   +W+LM 
Sbjct: 298 RKGAFAIYLEPWHADIFKFISLKRNTGKEEHRARDLFYGLWIPDLFMKRVEEGKKWTLMD 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T  GLSD +GE+F+  Y+KYE E +    V A+ LW AIL SQIETG P+MLYKDACN
Sbjct: 358 PKTAPGLSDCYGEEFERKYEKYEKENRGTDSVAAQDLWSAILQSQIETGGPFMLYKDACN 417

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTIKCSNLCTEI+++TSKDEVAVCNLASIAL  ++   + T++  +L  V K
Sbjct: 418 RKSNQKNLGTIKCSNLCTEIIQFTSKDEVAVCNLASIALPRFVK--NGTFDHHELHRVTK 475

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+ID N YPV EA  SNMRHRPIGIGVQGLAD F  +R PF   +++ LNK+I
Sbjct: 476 VVTRNLNKVIDRNTYPVREAEASNMRHRPIGIGVQGLADTFACLRYPFASPDAKKLNKEI 535

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTPTDLWD 379
           FETIYY A+EAS E+A   G Y+++ GSP S+G+LQ D+W            +T +  WD
Sbjct: 536 FETIYYSAVEASVELAETHGSYESFAGSPASEGLLQPDLWEKELVQKGRKPVLTCSGRWD 595

Query: 380 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 439
           W  L+E++ K G+RNSLL+APMPTAST+QILGNNE  EP+TSNIY RRVLSGEF +VN +
Sbjct: 596 WTMLRERVMKSGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPIVNKY 655

Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
           L+ DL++ G+W+D M++Q+I +NGSIQ+I GIP KLK+LYK VWEI Q+ ++DMA DRG 
Sbjct: 656 LVIDLIKDGMWNDEMRNQIIAHNGSIQNIPGIPDKLKELYKVVWEIKQRDLIDMAVDRGH 715

Query: 500 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +IDQSQSLNI++      +++SMHF+ WK GLKTGMYYLR+KPAA+AI+FTID  K+   
Sbjct: 716 YIDQSQSLNIFLESPTLPQLTSMHFYAWKSGLKTGMYYLRSKPAADAIKFTIDPKKL--- 772

Query: 560 MASKDARSQEEIQADQEQAMAAMIC 584
              K+ ++   +QA +  A     C
Sbjct: 773 ---KEMQADSALQAQRHYATTEGEC 794



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 121/213 (56%), Positives = 162/213 (76%), Gaps = 6/213 (2%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           +T +  WDW  L+E++ K G+RNSLL+APMPTAST+QILGNNE  EP+TSNIY RRVLSG
Sbjct: 588 LTCSGRWDWTMLRERVMKSGMRNSLLVAPMPTASTSQILGNNECIEPFTSNIYVRRVLSG 647

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF +VN +L+ DL++ G+W+D M++Q+I +NGSIQ+I GIP KLK+LYK VWEI Q+ ++
Sbjct: 648 EFPIVNKYLVIDLIKDGMWNDEMRNQIIAHNGSIQNIPGIPDKLKELYKVVWEIKQRDLI 707

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           DMA DRG +IDQSQSLNI++      +++SMHF+ WK GLKTGMYYLR+KPAA+AI+FTI
Sbjct: 708 DMAVDRGHYIDQSQSLNIFLESPTLPQLTSMHFYAWKSGLKTGMYYLRSKPAADAIKFTI 767

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
           D  K+      K+ ++   +QA +  A     C
Sbjct: 768 DPKKL------KEMQADSALQAQRHYATTEGEC 794



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 67/85 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFAIYLEPWH DIF F+ LK+NTGKEE RARDLFYGLWIPD FM+RVE   +W+LM 
Sbjct: 298 RKGAFAIYLEPWHADIFKFISLKRNTGKEEHRARDLFYGLWIPDLFMKRVEEGKKWTLMD 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P    GLSD +GE+F+  Y+KYE E
Sbjct: 358 PKTAPGLSDCYGEEFERKYEKYEKE 382



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F  +R PF   +++ LNK+IFETIYY A+EAS E+A   G Y+++ GSP S
Sbjct: 507 IGVQGLADTFACLRYPFASPDAKKLNKEIFETIYYSAVEASVELAETHGSYESFAGSPAS 566

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +G+LQ D+W            +T +  WDW  L+   +  G++
Sbjct: 567 EGLLQPDLWEKELVQKGRKPVLTCSGRWDWTMLRERVMKSGMR 609



 Score = 62.8 bits (151), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW AIL SQIETG P+MLYKDACNRKSNQ+NL  I+
Sbjct: 394 LWSAILQSQIETGGPFMLYKDACNRKSNQKNLGTIK 429



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A +R ++   LE    +YN ++  +    P+ISD+ + II K +  LN  I Y RD NY 
Sbjct: 85  ALHRITHSDVLEAFGVMYNHLSHTSREHAPLISDETWGIIKKRSKELNEIIDYKRDLNYE 144

Query: 766 FFGFK 770
           +FG+K
Sbjct: 145 YFGYK 149


>gi|149238952|ref|XP_001525352.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146450845|gb|EDK45101.1| ribonucleoside-diphosphate reductase large chain [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 862

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 287/465 (61%), Positives = 374/465 (80%), Gaps = 3/465 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+FD L+++KN G EE R RDLFYGLWIPD FM RV+++ QWSL  
Sbjct: 298 RPGAFAIYLEPWHADVFDILDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G+ F +LY++YE E    R + A+KLW AIL+SQ ETG PYMLYKDACN
Sbjct: 358 PDEAPGLSDVYGDDFKELYERYEKEKLATRTINAQKLWLAILESQTETGGPYMLYKDACN 417

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA--DKTYNFTKLKDV 268
           RKSNQ+NLGTIK SNLC EI+EY+S  E AVCNLAS+AL  ++  +  D  ++F KL +V
Sbjct: 418 RKSNQKNLGTIKSSNLCCEIIEYSSPTETAVCNLASLALPSFLEVSEDDIKFDFLKLHEV 477

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VTKNLNK+IDV  YPVE A+NSN +HRPI +GVQGLADLF+++RLPFD + ++ LN 
Sbjct: 478 TKVVTKNLNKVIDVTMYPVESAKNSNKKHRPIALGVQGLADLFLELRLPFDSSAAKNLNI 537

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKEKI 387
           QIFET+Y+ A+EAS E++  +GPY +++GSP S+G LQ+D+W   P+DL+D W  LK K+
Sbjct: 538 QIFETVYHAAIEASMELSIVEGPYASFQGSPASKGKLQFDLWNHKPSDLYDDWDILKSKV 597

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRVLSGEFQVVN +L++DL++L
Sbjct: 598 MKYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYNRRVLSGEFQVVNKYLIKDLIDL 657

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW+  M+++L+++ GS+Q+I+ +P++LK LY+TVWE+ QK ++DMAADR  FIDQ QS+
Sbjct: 658 GLWNSAMRNKLMMDGGSVQNIDILPKELKTLYRTVWELKQKDIIDMAADRAKFIDQLQSM 717

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           NIY+      K++S HFH W++GLKTGMYYLRT+ A  AIQFTID
Sbjct: 718 NIYLQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAATRAIQFTID 762



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 169/219 (77%), Gaps = 2/219 (0%)

Query: 769 FKYDMWGVTPTDLWD-WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P+DL+D W  LK K+ K+G+RNSLL+APMPTAST+QILG NE FEPYTSN+
Sbjct: 574 LQFDLWNHKPSDLYDDWDILKSKVMKYGLRNSLLVAPMPTASTSQILGFNECFEPYTSNL 633

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVLSGEFQVVN +L++DL++LGLW+  M+++L+++ GS+Q+I+ +P++LK LY+TVW
Sbjct: 634 YNRRVLSGEFQVVNKYLIKDLIDLGLWNSAMRNKLMMDGGSVQNIDILPKELKTLYRTVW 693

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+ QK ++DMAADR  FIDQ QS+NIY+      K++S HFH W++GLKTGMYYLRT+ A
Sbjct: 694 ELKQKDIIDMAADRAKFIDQLQSMNIYLQNPTIGKLTSCHFHAWEMGLKTGMYYLRTQAA 753

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAM 986
             AIQFTID  + AN + ++ T   + ++  +     AM
Sbjct: 754 TRAIQFTIDANE-ANLVNTQQTSLNKGLKRKKYVETTAM 791



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+FD L+++KN G EE R RDLFYGLWIPD FM RV+++ QWSL  
Sbjct: 298 RPGAFAIYLEPWHADVFDILDMRKNHGNEEHRTRDLFYGLWIPDLFMERVKTNGQWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +G+ F +LY++YE E L
Sbjct: 358 PDEAPGLSDVYGDDFKELYERYEKEKL 384



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 93/141 (65%), Gaps = 6/141 (4%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLADLF+++RLPFD + ++ LN QIFET+Y+ A+EAS E++  +GPY +++GSP 
Sbjct: 510 ALGVQGLADLFLELRLPFDSSAAKNLNIQIFETVYHAAIEASMELSIVEGPYASFQGSPA 569

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR 709
           S+G LQ+D+W   P+DL+ DW  LK   + YGL+   ++L + + T  T  +L  + C  
Sbjct: 570 SKGKLQFDLWNHKPSDLYDDWDILKSKVMKYGLR--NSLLVAPMPTASTSQILGFNECFE 627

Query: 710 --KSNQQNLEVIEELYNMVNK 728
              SN  N  V+   + +VNK
Sbjct: 628 PYTSNLYNRRVLSGEFQVVNK 648



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/37 (78%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW AIL+SQ ETG PYMLYKDACNRKSNQ+NL  I+
Sbjct: 393 KLWLAILESQTETGGPYMLYKDACNRKSNQKNLGTIK 429


>gi|46446982|ref|YP_008347.1| ribonucleoside-diphosphate reductase large chain [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400623|emb|CAF24072.1| probable ribonucleoside-diphosphate reductase large chain
           [Candidatus Protochlamydia amoebophila UWE25]
          Length = 773

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 298/463 (64%), Positives = 367/463 (79%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI+ FL+L+KN GKEE RARDLF  LWIPD FM+RVE D  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWSLFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN    L + WGE+F+ LY  YE EGK    + A+ LWF IL+SQIETG PYML+KDACN
Sbjct: 353 PNEAPNLHECWGEEFEHLYCLYEQEGKAREVIKAQDLWFKILESQIETGNPYMLFKDACN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTIK SNLCTEI+EYTS  E AVCNLASIAL  +I   +  ++  KL +V +
Sbjct: 413 YKSNQKHLGTIKLSNLCTEIIEYTSPHEAAVCNLASIALPRFI--INGHFDHQKLFEVTQ 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NL+KIID N YP+ EA+ SN+ HRPIGIGVQGLAD FI +R+PFD  E+R LN+ I
Sbjct: 471 VITRNLDKIIDENSYPIVEAQTSNLLHRPIGIGVQGLADAFILLRMPFDSKEARALNQAI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GAL AS ++A + G Y +YEGSP+S+GILQY+MW V P+  WDW ALK +IA H
Sbjct: 531 FETIYFGALTASKDLAKKKGRYPSYEGSPISKGILQYEMWNVKPSSNWDWEALKTEIAVH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTAST+QILGNNE FEPYTSN+Y+RRVLSGEF VVN HL+RDLV+  LW
Sbjct: 591 GIRNSLLVALMPTASTSQILGNNECFEPYTSNLYTRRVLSGEFIVVNKHLMRDLVKRELW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK +++  NGSIQ IE IP ++K+LYKTVWEI QK ++DMAADRG FI QSQSLN++
Sbjct: 651 NEEMKQRILAANGSIQGIEEIPSEIKELYKTVWEIKQKALIDMAADRGPFICQSQSLNLF 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +    +AK+SSMHF+ WK GLKTGMYYLR K AA AI+FT+++
Sbjct: 711 VESPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAAEAIKFTVNQ 753



 Score =  271 bits (692), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 155/189 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW V P+  WDW ALK +IA HG+RNSLL+A MPTAST+QILGNNE FEPYTSN+Y
Sbjct: 565 LQYEMWNVKPSSNWDWEALKTEIAVHGIRNSLLVALMPTASTSQILGNNECFEPYTSNLY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEF VVN HL+RDLV+  LW++ MK +++  NGSIQ IE IP ++K+LYKTVWE
Sbjct: 625 TRRVLSGEFIVVNKHLMRDLVKRELWNEEMKQRILAANGSIQGIEEIPSEIKELYKTVWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMAADRG FI QSQSLN+++    +AK+SSMHF+ WK GLKTGMYYLR K AA
Sbjct: 685 IKQKALIDMAADRGPFICQSQSLNLFVESPTFAKLSSMHFYAWKKGLKTGMYYLRIKAAA 744

Query: 949 NAIQFTIDK 957
            AI+FT+++
Sbjct: 745 EAIKFTVNQ 753



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI+ FL+L+KN GKEE RARDLF  LWIPD FM+RVE D  WSL C
Sbjct: 293 RKGSFAIYLEPWHADIYAFLDLRKNHGKEELRARDLFTALWIPDLFMKRVEEDGVWSLFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    L + WGE+F+ LY  YE EG
Sbjct: 353 PNEAPNLHECWGEEFEHLYCLYEQEG 378



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/141 (46%), Positives = 90/141 (63%), Gaps = 7/141 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI +R+PFD  E+R LN+ IFETIY+GAL AS ++A + G Y +YEGSP+S
Sbjct: 502 IGVQGLADAFILLRMPFDSKEARALNQAIFETIYFGALTASKDLAKKKGRYPSYEGSPIS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQIETGTPYMLYKDACNR- 709
           +GILQY+MW V P+  WDW ALK    V+G++  L  A++ +     T  +L  + C   
Sbjct: 562 KGILQYEMWNVKPSSNWDWEALKTEIAVHGIRNSLLVALMPT---ASTSQILGNNECFEP 618

Query: 710 -KSNQQNLEVIEELYNMVNKE 729
             SN     V+   + +VNK 
Sbjct: 619 YTSNLYTRRVLSGEFIVVNKH 639



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWF IL+SQIETG PYML+KDACN KSNQ++L  I+
Sbjct: 389 LWFKILESQIETGNPYMLFKDACNYKSNQKHLGTIK 424



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 9/109 (8%)

Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
           GVT ++L + AA +V A +      +A+L S+I              + +N+     I E
Sbjct: 50  GVTTSELDNLAA-EVAASLTVKHPDYALLASRIAISN--------LQKNTNKSFARTIGE 100

Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LY+ ++ +TG +  +I++  Y+I+  +A+ L++ +IYDRDF Y++FGFK
Sbjct: 101 LYHYIDPKTGKKASLIAEDVYKIVQNHAEILDATMIYDRDFGYDYFGFK 149


>gi|18640128|ref|NP_570202.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
 gi|18448535|gb|AAL69781.1| SPV042 ribonucleotide reductase large chain [Swinepox virus]
          Length = 757

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 290/462 (62%), Positives = 372/462 (80%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA +IY+EPWH DIFDFL L+KN G EE+R +DLF  LW+PD FM RVE D +WSLMC
Sbjct: 293 RPGAMSIYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWSLMC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D WG  F+ LY +YE + K    V AR LW +I+++QIE GTPY+LYKD+CN
Sbjct: 353 PCECPGLCDVWGNDFNKLYIEYETKKKIKAIVKARSLWKSIIEAQIEQGTPYILYKDSCN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ NLGTI+ SNLCTEI++++++DEVAVCNL SI+L+ ++N  +  + F KL+ + K
Sbjct: 413 KKSNQSNLGTIRSSNLCTEIIQFSNEDEVAVCNLGSISLSKFVN--NNVFMFDKLRIITK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNLNKIID+N+YPV E+  SN +HRPIGIGVQGLAD+FI +   FD  E+++LN QI
Sbjct: 471 ILVKNLNKIIDINYYPVIESSRSNKKHRPIGIGVQGLADVFILLGYAFDSEEAKILNIQI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE+SCE+A   GPY+TY  SP S+GILQYDMW   PTDLWDW  LK++I  H
Sbjct: 531 FETIYYAALESSCELAKIYGPYETYNDSPASKGILQYDMWLKNPTDLWDWNELKKRINTH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTAST+QIL NNES EPYTSNIY+RRVLSG+FQVVN HLLR+L+   +W
Sbjct: 591 GLRNSLLIAPMPTASTSQILSNNESIEPYTSNIYTRRVLSGDFQVVNPHLLRELISRNMW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++++K+ ++++NGSIQ ++ +P  +K +YKTVWEI QK +L+MAADRGAFIDQSQS+ IY
Sbjct: 651 NNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWEISQKCILEMAADRGAFIDQSQSMTIY 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +    YAK++SMHF+GW+LGLKTGMYY+RTK A+N I+FT++
Sbjct: 710 IDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSASNPIKFTVE 751



 Score =  273 bits (699), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 122/188 (64%), Positives = 159/188 (84%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PTDLWDW  LK++I  HG+RNSLLIAPMPTAST+QIL NNES EPYTSNIY
Sbjct: 565 LQYDMWLKNPTDLWDWNELKKRINTHGLRNSLLIAPMPTASTSQILSNNESIEPYTSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSG+FQVVN HLLR+L+   +W++++K+ ++++NGSIQ ++ +P  +K +YKTVWE
Sbjct: 625 TRRVLSGDFQVVNPHLLRELISRNMWNNDIKNTIVLHNGSIQHLD-LPDNIKQIYKTVWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L+MAADRGAFIDQSQS+ IY+    YAK++SMHF+GW+LGLKTGMYY+RTK A+
Sbjct: 684 ISQKCILEMAADRGAFIDQSQSMTIYIDNPTYAKLTSMHFYGWRLGLKTGMYYMRTKSAS 743

Query: 949 NAIQFTID 956
           N I+FT++
Sbjct: 744 NPIKFTVE 751



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 62/84 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA +IY+EPWH DIFDFL L+KN G EE+R +DLF  LW+PD FM RVE D +WSLMC
Sbjct: 293 RPGAMSIYIEPWHADIFDFLSLRKNVGNEEYRTKDLFTALWVPDLFMERVEKDEEWSLMC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P  C GL D WG  F+ LY +YE 
Sbjct: 353 PCECPGLCDVWGNDFNKLYIEYET 376



 Score =  123 bits (308), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+FI +   FD  E+++LN QIFETIYY ALE+SCE+A   GPY+TY  SP S
Sbjct: 502 IGVQGLADVFILLGYAFDSEEAKILNIQIFETIYYAALESSCELAKIYGPYETYNDSPAS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW   PTDLWDW  LK     +GL+
Sbjct: 562 KGILQYDMWLKNPTDLWDWNELKKRINTHGLR 593



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW +I+++QIE GTPY+LYKD+CN+KSNQ NL  I
Sbjct: 389 LWKSIIEAQIEQGTPYILYKDSCNKKSNQSNLGTI 423



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 41/63 (65%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +   +VI  LYN +N   G   PM+S+  Y+ + K+ D +++ I YDRD++Y++F
Sbjct: 87  HKETTESFSDVIHTLYNYINPNNGNHLPMVSEYLYQQVNKHRDIIDNVIAYDRDYSYSYF 146

Query: 768 GFK 770
           G K
Sbjct: 147 GIK 149


>gi|90592870|ref|YP_529823.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
 gi|71559320|gb|AAZ38319.1| RR1 [Agrotis segetum nucleopolyhedrovirus]
          Length = 779

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 285/463 (61%), Positives = 368/463 (79%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI+  L LK+N G E+ +ARDL Y LW+PD FM RV ++  WSLMC
Sbjct: 285 RKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMERVNANGVWSLMC 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLSD +G  F++LY+KYE EG++ +QV A+ L   I+++Q+ETG PYMLYKDACN
Sbjct: 345 PNKCPGLSDCYGSAFEELYRKYEEEGRYQQQVRAQDLHRFIVETQVETGGPYMLYKDACN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLC EIV+Y+  +E AVCNLASIA+N  +   +  ++F KL+ + K
Sbjct: 405 RKSNQQNLGTIKCSNLCAEIVQYSDAEETAVCNLASIAVNSCVVVDEARFDFEKLRHITK 464

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N YP+E AR SNM+HRPIG+G+QGLAD F+ +R+P++ +E+ LLN+QI
Sbjct: 465 VVVRNLNKIIDRNRYPIESARMSNMKHRPIGVGIQGLADAFVLLRMPYESDEAMLLNRQI 524

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIY+GALEASCE+A   G Y +++GSP S+GILQYDMW V PT LWDW  LKE I KH
Sbjct: 525 AETIYFGALEASCELAKTWGSYSSFQGSPASEGILQYDMWDVRPTSLWDWGTLKEDIKKH 584

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+GEFQVVN +L+ DL++L L+
Sbjct: 585 GLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIDDLIKLKLY 644

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              M++ +  + GSIQ I+GIP  +K LYKT WE+  K +++MAADR AFIDQSQSLN++
Sbjct: 645 TSEMRNAIFAHKGSIQAIDGIPDHIKRLYKTAWEMKCKRMIEMAADRNAFIDQSQSLNLF 704

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +AE  YA M+S+H + W+ GLKTGMYYLRTKPAA+  QFT+++
Sbjct: 705 VAEPTYALMTSIHDYTWRSGLKTGMYYLRTKPAAHTQQFTVEQ 747



 Score =  262 bits (669), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 119/189 (62%), Positives = 152/189 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW V PT LWDW  LKE I KHG+RNSLL+A MPTA+TAQILGNNESFEP+TSN+Y
Sbjct: 559 LQYDMWDVRPTSLWDWGTLKEDIKKHGLRNSLLVAYMPTATTAQILGNNESFEPFTSNVY 618

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQVVN +L+ DL++L L+   M++ +  + GSIQ I+GIP  +K LYKT WE
Sbjct: 619 LRRVLAGEFQVVNQYLIDDLIKLKLYTSEMRNAIFAHKGSIQAIDGIPDHIKRLYKTAWE 678

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K +++MAADR AFIDQSQSLN+++AE  YA M+S+H + W+ GLKTGMYYLRTKPAA
Sbjct: 679 MKCKRMIEMAADRNAFIDQSQSLNLFVAEPTYALMTSIHDYTWRSGLKTGMYYLRTKPAA 738

Query: 949 NAIQFTIDK 957
           +  QFT+++
Sbjct: 739 HTQQFTVEQ 747



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI+  L LK+N G E+ +ARDL Y LW+PD FM RV ++  WSLMC
Sbjct: 285 RKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMERVNANGVWSLMC 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD +G  F++LY+KYE EG
Sbjct: 345 PNKCPGLSDCYGSAFEELYRKYEEEG 370



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F+ +R+P++ +E+ LLN+QI ETIY+GALEASCE+A   G Y +++GSP S
Sbjct: 496 VGIQGLADAFVLLRMPYESDEAMLLNRQIAETIYFGALEASCELAKTWGSYSSFQGSPAS 555

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYDMW V PT LWDW  LK     +GL+
Sbjct: 556 EGILQYDMWDVRPTSLWDWGTLKEDIKKHGLR 587



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 689 ILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           I+++Q+ETG PYMLYKDACNRKSNQQNL  I+
Sbjct: 385 IVETQVETGGPYMLYKDACNRKSNQQNLGTIK 416


>gi|357542100|gb|AET84860.1| ribonucleotide reductase [Micromonas pusilla virus SP1]
          Length = 749

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 297/469 (63%), Positives = 362/469 (77%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLE++ N G +E R RDLF  LWIPD FM+RVE   +WSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLEIRLNQGDDEARCRDLFSALWIPDLFMKRVEEGGKWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+T +GLSD +G++F+ LY +YE EG     VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDTAKGLSDVYGDEFEALYTRYEEEGLATSTVPASDIWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG IK SNLCTEI+EYT KDE +VCNLAS+AL  Y+N   KT++F KL +V K
Sbjct: 398 MKSNQKNLGVIKSSNLCTEIIEYTDKDETSVCNLASVALPKYVNTETKTFDFAKLHEVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID NFYPVE ARNSN++HRPIG+GVQGLAD+FI   L FDC ESRLLN  I
Sbjct: 458 TVTKNLNRVIDRNFYPVETARNSNLKHRPIGMGVQGLADVFILCGLSFDCEESRLLNSHI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FET+Y+ ALEAS E+A  DG Y+T++GSP SQGILQ +MW G T  + L+DW A++E+I 
Sbjct: 518 FETMYHAALEASSELAEIDGSYETFQGSPASQGILQPEMWEGETKFSGLYDWEAMRERIK 577

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL ++G
Sbjct: 578 TKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKKIG 637

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MKD ++   GSIQ+I  IP  +K LYKTVWEI QK ++DMAADRG FIDQSQS+N
Sbjct: 638 LWSKEMKDIMVKAGGSIQNIVDIPDNIKKLYKTVWEISQKCIIDMAADRGRFIDQSQSMN 697

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           ++M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++   +A
Sbjct: 698 LFMESPTMSKLSSMHMYAWKSGLKTGMYYLRSKAKARPIQFSLEPECIA 746



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 2/192 (1%)

Query: 772 DMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYS 829
           +MW G T  + L+DW A++E+I   G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY 
Sbjct: 555 EMWEGETKFSGLYDWEAMRERIKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYL 614

Query: 830 RRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           RR L+GEF VVN HL+ DL ++GLW   MKD ++   GSIQ+I  IP  +K LYKTVWEI
Sbjct: 615 RRTLAGEFVVVNKHLVNDLKKIGLWSKEMKDIMVKAGGSIQNIVDIPDNIKKLYKTVWEI 674

Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
            QK ++DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A 
Sbjct: 675 SQKCIIDMAADRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKSGLKTGMYYLRSKAKAR 734

Query: 950 AIQFTIDKTKMA 961
            IQF+++   +A
Sbjct: 735 PIQFSLEPECIA 746



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 65/87 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLE++ N G +E R RDLF  LWIPD FM+RVE   +WSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLEIRLNQGDDEARCRDLFSALWIPDLFMKRVEEGGKWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G++F+ LY +YE EGL
Sbjct: 338 PDTAKGLSDVYGDEFEALYTRYEEEGL 364



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 2/94 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI   L FDC ESRLLN  IFET+Y+ ALEAS E+A  DG Y+T++GSP S
Sbjct: 489 MGVQGLADVFILCGLSFDCEESRLLNSHIFETMYHAALEASSELAEIDGSYETFQGSPAS 548

Query: 653 QGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           QGILQ +MW G T  + L+DW A++      GL+
Sbjct: 549 QGILQPEMWEGETKFSGLYDWEAMRERIKTKGLR 582



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AIL SQ ETGTPYMLYKDACN KSNQ+NL VI+
Sbjct: 374 IWKAILKSQTETGTPYMLYKDACNMKSNQKNLGVIK 409


>gi|303391084|ref|XP_003073772.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
 gi|303302920|gb|ADM12412.1| ribonucleoside diphosphate reductase [Encephalitozoon intestinalis
           ATCC 50506]
          Length = 768

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 288/474 (60%), Positives = 379/474 (79%), Gaps = 7/474 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIYLEPWH +IFDFL+L+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNEEWSLFC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
           P+   GL+++WGE+F+ LY KYE   K I +  VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 347 PSQAVGLNETWGEEFNALYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 403

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           CNR SNQQ+LGTIK SNLC EIVEY+S +E +VCNL SI+L M++   +K ++F  LKDV
Sbjct: 404 CNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLGSISLPMFVK--NKKFDFESLKDV 461

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I+T NLNK+ID N+YPVEE++ SNM+HRPIGIGVQGLADLF  +RLPFD +E+R LNK
Sbjct: 462 VRILTINLNKVIDFNYYPVEESKRSNMKHRPIGIGVQGLADLFAILRLPFDSDEARNLNK 521

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            IFET+YY ALE SC++A ++GP+++YEGSP+S+GI  +++ G   ++ WDW  L+E+I 
Sbjct: 522 DIFETMYYSALETSCKLAEKEGPFESYEGSPISKGIFHFELAGKKASNNWDWEGLRERIK 581

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K+G RNSLLIA MPTA T+QI GNNE+FEP+ SNIY+RR  +GEFQ+VN HL+ DL ELG
Sbjct: 582 KYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIYTRRTHAGEFQIVNKHLINDLSELG 641

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK+ +I N GSIQ+I  IP+K++D+YKT WEI  K V+D+AADR  F+DQSQSLN
Sbjct: 642 LWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWEIKMKAVIDLAADRQVFVDQSQSLN 701

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           +++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  +AI+FT+DK      ++S
Sbjct: 702 VFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755



 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 153/198 (77%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++ G   ++ WDW  L+E+I K+G RNSLLIA MPTA T+QI GNNE+FEP+ SNIY
Sbjct: 558 FHFELAGKKASNNWDWEGLRERIKKYGTRNSLLIALMPTAGTSQIFGNNETFEPFISNIY 617

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN HL+ DL ELGLW   MK+ +I N GSIQ+I  IP+K++D+YKT WE
Sbjct: 618 TRRTHAGEFQIVNKHLINDLSELGLWSYEMKNLIIENEGSIQNITTIPKKIRDIYKTAWE 677

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+D+AADR  F+DQSQSLN+++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  
Sbjct: 678 IKMKAVIDLAADRQVFVDQSQSLNVFVAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 737

Query: 949 NAIQFTIDKTKMANAMAS 966
           +AI+FT+DK      ++S
Sbjct: 738 SAIKFTVDKKLAEKTLSS 755



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 68/83 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIYLEPWH +IFDFL+L+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIYLEPWHMEIFDFLDLRKNTGPEEFRARDIFIALWINDLFMERVKNNEEWSLFC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL+++WGE+F+ LY KYE
Sbjct: 347 PSQAVGLNETWGEEFNALYCKYE 369



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLF  +RLPFD +E+R LNK IFET+YY ALE SC++A ++GP+++YEGSP+S
Sbjct: 495 IGVQGLADLFAILRLPFDSDEARNLNKDIFETMYYSALETSCKLAEKEGPFESYEGSPIS 554

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI  +++ G   ++ WDW  L+     YG +
Sbjct: 555 KGIFHFELAGKKASNNWDWEGLRERIKKYGTR 586



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           SQ +   + WG     L+  +       +V   KLW AI+++QIETGTPYM YKDACNR 
Sbjct: 348 SQAVGLNETWGEEFNALYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 711 SNQQNLEVIE 720
           SNQQ+L  I+
Sbjct: 408 SNQQHLGTIK 417


>gi|163955126|ref|YP_001648230.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
 gi|163638575|gb|ABY27934.1| hypothetical protein OsV5_153r [Ostreococcus virus OsV5]
          Length = 747

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 294/462 (63%), Positives = 361/462 (78%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLS++ GE+F+ LY KYE EG+    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSEAVGEEFEALYTKYEEEGRANATVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EYT KDE +VCNLASIAL  Y+N   +++++ KL ++ K
Sbjct: 398 TKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  RL FD +E++ +N +I
Sbjct: 458 VVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  +GPY+T+EGSP SQGILQ+DMW       +DW ALKE+I + 
Sbjct: 518 FETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWQGETKLNYDWDALKERIREK 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL ++GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP  +K+LY+TVWEI  K V+DMAADRG FIDQSQS+N++
Sbjct: 638 SKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 144/188 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW ALKE+I + G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 LQFDMWQGETKLNYDWDALKERIREKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF VVN HL+ DL ++GLW  +MKD ++   GSIQ+I  IP  +K+LY+TVWE
Sbjct: 612 LRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 63/86 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLS++ GE+F+ LY KYE EG
Sbjct: 338 PDKAPGLSEAVGEEFEALYTKYEEEG 363



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  RL FD +E++ +N +IFET+Y+ ALEAS E+A  +GPY+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYETFEGSPAS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ+DMW       +DW ALK      GL+
Sbjct: 549 QGILQFDMWQGETKLNYDWDALKERIREKGLR 580



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A V    +W AIL SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 367 ATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIK 409


>gi|145527768|ref|XP_001449684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417272|emb|CAK82287.1| unnamed protein product [Paramecium tetraurelia]
          Length = 621

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 295/462 (63%), Positives = 368/462 (79%), Gaps = 2/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  FL+L+KN G EE RARDLF GLWIPD FM+RV+ D+ W+LMC
Sbjct: 101 RKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMC 160

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY  YE++      + AR+LW  I+D+QI TG PYMLYKDACN
Sbjct: 161 PNECPGLQDCYGQEFNKLYTDYESKNMGRVTMKARQLWQEIIDAQISTGLPYMLYKDACN 220

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI++YTS DEVAVCNLASI L   I   DKT+NF KL ++ K
Sbjct: 221 SKSNQKNLGTIKSSNLCTEIIQYTSPDEVAVCNLASINLQKLIK-EDKTFNFDKLLEITK 279

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T NLN +ID+NFYPV++A  SN R+RPIGIGVQG AD   +M++PFD  ++  LN +I
Sbjct: 280 IITTNLNIVIDLNFYPVQQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKI 339

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGA E S E+A + GPY+T+ GSP SQGILQ+DMWGV+P  L+DW  LK+ I K+
Sbjct: 340 FETIYYGACERSLELAQQLGPYETFAGSPASQGILQFDMWGVSP-KLYDWNTLKQNIVKY 398

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTAST+QIL NNESFEPYT+NIY+RRVL+GEF  +N HL+ DL+EL LW
Sbjct: 399 GMRNSLLIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLW 458

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K++LI+NNGS+Q+I+ IP  +K LYKTVWEI QK +L++A  R  FIDQSQSLNI+
Sbjct: 459 TPQIKNKLIMNNGSVQNIDEIPTNIKQLYKTVWEISQKAILNLATSRAPFIDQSQSLNIH 518

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MAE   +K++SMHF+ W+ GLKTGMYYLRT+PAA+ I+FT+D
Sbjct: 519 MAEPTMSKVTSMHFYAWEKGLKTGMYYLRTRPAADPIKFTVD 560



 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 121/188 (64%), Positives = 156/188 (82%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGV+P  L+DW  LK+ I K+G+RNSLLIAPMPTAST+QIL NNESFEPYT+NIY
Sbjct: 374 LQFDMWGVSP-KLYDWNTLKQNIVKYGMRNSLLIAPMPTASTSQILQNNESFEPYTTNIY 432

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF  +N HL+ DL+EL LW   +K++LI+NNGS+Q+I+ IP  +K LYKTVWE
Sbjct: 433 TRRVLAGEFVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIDEIPTNIKQLYKTVWE 492

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +L++A  R  FIDQSQSLNI+MAE   +K++SMHF+ W+ GLKTGMYYLRT+PAA
Sbjct: 493 ISQKAILNLATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAWEKGLKTGMYYLRTRPAA 552

Query: 949 NAIQFTID 956
           + I+FT+D
Sbjct: 553 DPIKFTVD 560



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  FL+L+KN G EE RARDLF GLWIPD FM+RV+ D+ W+LMC
Sbjct: 101 RKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMC 160

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GL D +G++F+ LY  YE++ +
Sbjct: 161 PNECPGLQDCYGQEFNKLYTDYESKNM 187



 Score =  113 bits (283), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 71/99 (71%), Gaps = 1/99 (1%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           + N+   IGVQG AD   +M++PFD  ++  LN +IFETIYYGA E S E+A + GPY+T
Sbjct: 304 KRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACERSLELAQQLGPYET 363

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           + GSP SQGILQ+DMWGV+P  L+DW  LK   + YG++
Sbjct: 364 FAGSPASQGILQFDMWGVSP-KLYDWNTLKQNIVKYGMR 401



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW  I+D+QI TG PYMLYKDACN KSNQ+NL  I+
Sbjct: 196 QLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIK 232


>gi|388548927|gb|AFK66128.1| ribonucleoside diphosphate reductase [Ostreococcus lucimarinus
           virus OlV3]
          Length = 747

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 293/462 (63%), Positives = 360/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD+ GE+F+ LY KYEAEG+    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEAEGRANAIVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EYT KDE AVCNLASIAL  Y+N   +T+++ KL ++ K
Sbjct: 398 KKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVNEETRTFDYEKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  R  FD +E++ +N +I
Sbjct: 458 IVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRYAFDSDEAKEMNARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ +LEASCE+A   G Y+T+EGSP SQG+LQ+DMW       +DW ALKE+I + 
Sbjct: 518 FETMYHASLEASCELAEAQGSYETFEGSPTSQGVLQFDMWEGETKLHYDWDALKERIKEK 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF +VN HL+ DL ++GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVNDLKKIGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP  +K+LY+TVWEI  K V+DMAA RG FIDQSQS+N++
Sbjct: 638 SKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWEIKMKDVIDMAAQRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 143/188 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW ALKE+I + G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 LQFDMWEGETKLHYDWDALKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF +VN HL+ DL ++GLW  +MKD ++   GSIQ+I  IP  +K+LY+TVWE
Sbjct: 612 LRRTLAGEFVIVNKHLVNDLKKIGLWSKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAA RG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAAQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD+ GE+F+ LY KYEAEG
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEAEG 363



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  R  FD +E++ +N +IFET+Y+ +LEASCE+A   G Y+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRYAFDSDEAKEMNARIFETMYHASLEASCELAEAQGSYETFEGSPTS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG+LQ+DMW       +DW ALK
Sbjct: 549 QGVLQFDMWEGETKLHYDWDALK 571



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A+V    +W AIL SQ ETGTPYMLYKDACN+KSNQ+NL  I+
Sbjct: 367 AIVPAADVWKAILKSQTETGTPYMLYKDACNKKSNQKNLGTIK 409


>gi|449482513|ref|XP_002189376.2| PREDICTED: ribonucleoside-diphosphate reductase large subunit
           [Taeniopygia guttata]
          Length = 819

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/551 (58%), Positives = 389/551 (70%), Gaps = 61/551 (11%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 278 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D WGE+F+ LY+ YE +G+  R V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 338 PNECPGLDDVWGEEFEKLYESYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIKCSNLCTEIVEYTS++EVAVCNLASIALNMY+ P + +Y+F KL +V K
Sbjct: 398 RKSNQQNLGTIKCSNLCTEIVEYTSREEVAVCNLASIALNMYVTP-EHSYDFKKLAEVTK 456

Query: 271 IVTKNLNKIIDVNFYPVEEARNSN--MRHRP---------------------IGIGVQGL 307
           ++ +NLNKIID+N+YPV E  N    +R  P                      G    GL
Sbjct: 457 VIVRNLNKIIDINYYPVPEDLNRAQFVRGAPHAELSSEETWLPQTPRSPEALPGFWGSGL 516

Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS--------- 358
             L ++          R++  Q    ++Y  +E+  E      PY  Y+ S         
Sbjct: 517 TGLRVRCSYERQGRVRRVVKAQ---QLWYAIIESQTETGT---PYMLYKDSCNRKSNQQN 570

Query: 359 ----------------PVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMP 402
                              + ILQYDMW VTP+DLWDW ALKEKIAK+GVRNSLLI+PMP
Sbjct: 571 LGTIKCSNLCTEIVEYTSREEILQYDMWNVTPSDLWDWKALKEKIAKYGVRNSLLISPMP 630

Query: 403 TASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNN 462
           TASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLL+DL E GLW++ MK+Q+I +N
Sbjct: 631 TASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLWNEEMKNQIIAHN 690

Query: 463 GSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSM 522
           GSIQ+I  IP  LK LYKTVWEI QKT+L MAADRGAFIDQSQSLNI++AE NY K++SM
Sbjct: 691 GSIQNIPEIPDDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIHIAEPNYGKLTSM 750

Query: 523 HFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAM 582
           HF+GWK GLKTGMYYLRTKPAAN IQFT++K K+     +     ++E         AAM
Sbjct: 751 HFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASREEEEKERNK------AAM 804

Query: 583 ICRRDNKEDCI 593
           +C  +N+E+C+
Sbjct: 805 VCSLENREECL 815



 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 232/323 (71%), Gaps = 37/323 (11%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRT 734
           +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL  I        K +   T
Sbjct: 530 RVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI--------KCSNLCT 581

Query: 735 PMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKH 794
            ++     E I++                       YDMW VTP+DLWDW ALKEKIAK+
Sbjct: 582 EIVEYTSREEILQ-----------------------YDMWNVTPSDLWDWKALKEKIAKY 618

Query: 795 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 854
           GVRNSLLI+PMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLL+DL E GLW
Sbjct: 619 GVRNSLLISPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQVVNPHLLKDLTERGLW 678

Query: 855 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 914
           ++ MK+Q+I +NGSIQ+I  IP  LK LYKTVWEI QKT+L MAADRGAFIDQSQSLNI+
Sbjct: 679 NEEMKNQIIAHNGSIQNIPEIPDDLKQLYKTVWEISQKTILKMAADRGAFIDQSQSLNIH 738

Query: 915 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEE 974
           +AE NY K++SMHF+GWK GLKTGMYYLRTKPAAN IQFT++K K+     +     ++E
Sbjct: 739 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPAANPIQFTLNKEKLREREKASREEEEKE 798

Query: 975 IQADQEQAMAAMICRRDNKEDCL 997
                    AAM+C  +N+E+CL
Sbjct: 799 RNK------AAMVCSLENREECL 815



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 74/88 (84%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++  WSLMC
Sbjct: 278 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           PN C GL D WGE+F+ LY+ YE +G V
Sbjct: 338 PNECPGLDDVWGEEFEKLYESYERQGRV 365



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/209 (36%), Positives = 106/209 (50%), Gaps = 23/209 (11%)

Query: 44  DEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWH 103
           D   R+       ++ C N C  + +         Y   E   +      A  +Y+ P H
Sbjct: 394 DSCNRKSNQQNLGTIKCSNLCTEIVE---------YTSREEVAVCNLASIALNMYVTPEH 444

Query: 104 G-DIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMR----------RVESDAQWSLMCPN 152
             D     E+ K   +   +  D+ Y   +P++  R           + S+  W    P 
Sbjct: 445 SYDFKKLAEVTKVIVRNLNKIIDINY-YPVPEDLNRAQFVRGAPHAELSSEETWLPQTPR 503

Query: 153 TCRGLSDSWGEKFDDLYKK--YEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           +   L   WG     L  +  YE +G+  R V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 504 SPEALPGFWGSGLTGLRVRCSYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCN 563

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEV 239
           RKSNQQNLGTIKCSNLCTEIVEYTS++E+
Sbjct: 564 RKSNQQNLGTIKCSNLCTEIVEYTSREEI 592



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + V+E+LY  +N   G  +PMIS +  +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 80  VNVMEDLYTYINPHNGKHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNYFGFK 134



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D+WG     L++      +V  +V   +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL
Sbjct: 346 DVWGEEFEKLYESYERQGRVRRVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNL 405

Query: 717 EVIE 720
             I+
Sbjct: 406 GTIK 409



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 23/30 (76%)

Query: 655 ILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           ILQYDMW VTP+DLWDW ALK     YG++
Sbjct: 592 ILQYDMWNVTPSDLWDWKALKEKIAKYGVR 621


>gi|260666002|ref|YP_003212956.1| hypothetical protein H665_p133 [Ostreococcus tauri virus 1]
 gi|260161020|emb|CAY39721.1| hypothetical protein OTV1_133 [Ostreococcus tauri virus 1]
          Length = 747

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 294/462 (63%), Positives = 360/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLS++ GE+F+ LY KYE EG+    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSEAVGEEFEALYTKYEEEGRANATVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI+EYT KDE +VCNLASIAL  Y+N   +++++ KL ++ K
Sbjct: 398 TKSNQKNLGTIKSSNLCTEIIEYTDKDETSVCNLASIALPKYVNEETRSFDYEKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  RL FD +E++ +N +I
Sbjct: 458 VVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAKAMNARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  +GPY+T+EGSP SQGILQ+DMW       +DW ALKE+I   
Sbjct: 518 FETMYHAALEASSELAEVEGPYETFEGSPASQGILQFDMWEGETKLNYDWDALKERIRGV 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL ++GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVEDLKKIGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP  +K+LY+TVWEI  K V+DMAADRG FIDQSQS+N++
Sbjct: 638 SKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 143/188 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW ALKE+I   G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 LQFDMWEGETKLNYDWDALKERIRGVGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF VVN HL+ DL ++GLW  +MKD ++   GSIQ+I  IP  +K+LY+TVWE
Sbjct: 612 LRRTLAGEFVVVNKHLVEDLKKIGLWSKDMKDLMVKAGGSIQNIVDIPDDIKNLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKQGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 63/86 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMDFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLS++ GE+F+ LY KYE EG
Sbjct: 338 PDKAPGLSEAVGEEFEALYTKYEEEG 363



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 79/116 (68%), Gaps = 3/116 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  RL FD +E++ +N +IFET+Y+ ALEAS E+A  +GPY+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRLAFDSDEAKAMNARIFETMYHAALEASSELAEVEGPYETFEGSPAS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDAC 707
           QGILQ+DMW       +DW ALK    + G+ L  ++L + + T  T  +L  + C
Sbjct: 549 QGILQFDMWEGETKLNYDWDALK--ERIRGVGLRNSLLMAPMPTASTAQILGNNEC 602



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A V    +W AIL SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 367 ATVPAADVWKAILKSQTETGTPYMLYKDACNTKSNQKNLGTIK 409


>gi|422933669|ref|YP_007003794.1| ribonucleotide reductase subunit 1 [Cyprinid herpesvirus 1]
 gi|386686075|gb|AFJ20428.1| ribonucleotide reductase subunit 1 [Cyprinid herpesvirus 1]
          Length = 798

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/470 (62%), Positives = 362/470 (77%), Gaps = 9/470 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIFDFL+L+KN+G +E R RDLF  LW+PD FM+RV  D  WSLMC
Sbjct: 292 RPGAFAIYMEPWHADIFDFLDLRKNSGVDERRTRDLFTALWVPDLFMQRVRDDGDWSLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
           P +C GL   WG +F++LY++YEA  G   R V AR LW  IL SQ+ETG+PYMLYKD+ 
Sbjct: 352 PASCPGLDRVWGHEFNELYEQYEATPGAVRRVVKARYLWSQILVSQLETGSPYMLYKDSA 411

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
           N KSN QNLGTI+CSNLCTEI+EYT   EVAVCNLASIAL  ++      +N   L  V 
Sbjct: 412 NAKSNHQNLGTIRCSNLCTEIMEYTDSQEVAVCNLASIALPEFVQDGGYVFNHEYLAHVT 471

Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQ 329
           K+ T+NLNKIID NFYP+EE   SN+RHRPIGIGVQGLAD+F +M +PF   E++ LN++
Sbjct: 472 KVATRNLNKIIDCNFYPLEECSKSNLRHRPIGIGVQGLADVFQRMMMPFTSPEAKKLNRE 531

Query: 330 IFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKEK 386
           IFETIYY AL+ASCE+A   GPY +Y+GSPVS+GILQ+DMW V   DL   WDWA L+  
Sbjct: 532 IFETIYYAALQASCELAKEHGPYSSYQGSPVSKGILQFDMWNVKDEDLSGRWDWAELRRL 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HGVRNSLL+APMPTASTAQILGNNES EPYTSN Y RRVLSG+FQ+VN HL++ L  
Sbjct: 592 IGEHGVRNSLLVAPMPTASTAQILGNNESIEPYTSNFYQRRVLSGDFQIVNPHLVKCLET 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
            GLW+++M+ QL ++ GS+Q+I G P+ LK+++KTVWE+ Q+ ++DMAADR  FIDQSQS
Sbjct: 652 RGLWNEDMRLQLTIHRGSVQNIPGFPEDLKEIFKTVWELSQRDIIDMAADRAPFIDQSQS 711

Query: 507 LNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           LN+++       I   K+++MH HGW  GLKTGMYYLRTK AA+ +QFT+
Sbjct: 712 LNLHLGHEDDQNIKLKKLTAMHMHGWGKGLKTGMYYLRTKAAADPVQFTV 761



 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 116/195 (59%), Positives = 150/195 (76%), Gaps = 8/195 (4%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            ++DMW V   DL   WDWA L+  I +HGVRNSLL+APMPTASTAQILGNNES EPYTS
Sbjct: 567 LQFDMWNVKDEDLSGRWDWAELRRLIGEHGVRNSLLVAPMPTASTAQILGNNESIEPYTS 626

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           N Y RRVLSG+FQ+VN HL++ L   GLW+++M+ QL ++ GS+Q+I G P+ LK+++KT
Sbjct: 627 NFYQRRVLSGDFQIVNPHLVKCLETRGLWNEDMRLQLTIHRGSVQNIPGFPEDLKEIFKT 686

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMY 940
           VWE+ Q+ ++DMAADR  FIDQSQSLN+++       I   K+++MH HGW  GLKTGMY
Sbjct: 687 VWELSQRDIIDMAADRAPFIDQSQSLNLHLGHEDDQNIKLKKLTAMHMHGWGKGLKTGMY 746

Query: 941 YLRTKPAANAIQFTI 955
           YLRTK AA+ +QFT+
Sbjct: 747 YLRTKAAADPVQFTV 761



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 70/94 (74%), Gaps = 6/94 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIFDFL+L+KN+G +E R RDLF  LW+PD FM+RV  D  WSLMC
Sbjct: 292 RPGAFAIYMEPWHADIFDFLDLRKNSGVDERRTRDLFTALWVPDLFMQRVRDDGDWSLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGA 94
           P +C GL   WG +F++LY++YEA       PGA
Sbjct: 352 PASCPGLDRVWGHEFNELYEQYEAT------PGA 379



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 72/95 (75%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F +M +PF   E++ LN++IFETIYY AL+ASCE+A   GPY +Y+GSPVS
Sbjct: 504 IGVQGLADVFQRMMMPFTSPEAKKLNREIFETIYYAALQASCELAKEHGPYSSYQGSPVS 563

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +GILQ+DMW V   DL   WDWA L+ L   +G++
Sbjct: 564 KGILQFDMWNVKDEDLSGRWDWAELRRLIGEHGVR 598



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 8/62 (12%)

Query: 658 YDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
           Y+ +  TP      A  +V+   Y   LW  IL SQ+ETG+PYMLYKD+ N KSN QNL 
Sbjct: 370 YEQYEATPG-----AVRRVVKARY---LWSQILVSQLETGSPYMLYKDSANAKSNHQNLG 421

Query: 718 VI 719
            I
Sbjct: 422 TI 423



 Score = 44.3 bits (103), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 36/54 (66%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +  E+L+  +N +     P+ISD+ +++  ++A+ L++A+I+  D  Y++FGFK
Sbjct: 96  KTCEKLWKNINPDLDVEAPLISDEIFKLSQEHAEELDAALIHGNDHTYSYFGFK 149


>gi|443922933|gb|ELU42275.1| ribonucleoside-diphosphate reductase large chain [Rhizoctonia
           solani AG-1 IA]
          Length = 987

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/469 (64%), Positives = 366/469 (78%), Gaps = 14/469 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+E D  W+L C
Sbjct: 375 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMQRIEEDGDWTLFC 434

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D  G  F +LY KYE EG+  + + A+KLW+AILD+QIETG P+MLYKDA N
Sbjct: 435 PNEAPGLADVHGAAFVELYTKYEKEGRGRKTIKAQKLWYAILDAQIETGGPFMLYKDAAN 494

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-----NPADKTYNFTKL 265
            KSNQQNLGTIK SNLCTEI+EY++ DEVAVCNLASIAL  +I      P  K Y+F KL
Sbjct: 495 AKSNQQNLGTIKSSNLCTEIIEYSAPDEVAVCNLASIALPTFIVNDPAAPHGKRYDFKKL 554

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +V K+V  NLN IIDVN+YPV EARNSNMRHRPIGIGVQGLAD F+ +++PF+  E+R 
Sbjct: 555 HEVTKVVANNLNTIIDVNYYPVPEARNSNMRHRPIGIGVQGLADAFMCLKMPFESPEARE 614

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           LN  IFETIY+ A+EAS E+A   GPY T++GSP SQG LQ+D+WGVTP+ LW+W  LK 
Sbjct: 615 LNLLIFETIYHAAVEASVEMAEAQGPYSTFQGSPASQGKLQFDLWGVTPSGLWEWEDLKA 674

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           K+ + G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVV   LLRDLV
Sbjct: 675 KVVRTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVCPWLLRDLV 734

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LGLWDD+MK+ +I+ +GSIQ+I GIP  +K +YKTVWEI QKTVL++AADRGAFI QSQ
Sbjct: 735 SLGLWDDDMKN-MIIASGSIQNINGIPDDIKAIYKTVWEISQKTVLNLAADRGAFICQSQ 793

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           SLN+++   N  ++           L     YLRT+PAA AIQFT+D++
Sbjct: 794 SLNVHLQSPNARQLLP--------NLTRQFSYLRTRPAAQAIQFTVDQS 834



 Score =  239 bits (610), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 116/190 (61%), Positives = 147/190 (77%), Gaps = 9/190 (4%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGVTP+ LW+W  LK K+ + G+RNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 654 LQFDLWGVTPSGLWEWEDLKAKVVRTGLRNSLLLAPMPTASTSQILGFNECFEPYTSNIY 713

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEFQVV   LLRDLV LGLWDD+MK+ +I+ +GSIQ+I GIP  +K +YKTVWE
Sbjct: 714 TRRVLAGEFQVVCPWLLRDLVSLGLWDDDMKN-MIIASGSIQNINGIPDDIKAIYKTVWE 772

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKTVL++AADRGAFI QSQSLN+++   N  ++           L     YLRT+PAA
Sbjct: 773 ISQKTVLNLAADRGAFICQSQSLNVHLQSPNARQLLP--------NLTRQFSYLRTRPAA 824

Query: 949 NAIQFTIDKT 958
            AIQFT+D++
Sbjct: 825 QAIQFTVDQS 834



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM+R+E D  W+L C
Sbjct: 375 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFYALWIPDLFMQRIEEDGDWTLFC 434

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D  G  F +LY KYE EG
Sbjct: 435 PNEAPGLADVHGAAFVELYTKYEKEG 460



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +++PF+  E+R LN  IFETIY+ A+EAS E+A   GPY T++GSP S
Sbjct: 591 IGVQGLADAFMCLKMPFESPEARELNLLIFETIYHAAVEASVEMAEAQGPYSTFQGSPAS 650

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ+D+WGVTP+ LW+W  LK   +  GL+
Sbjct: 651 QGKLQFDLWGVTPSGLWEWEDLKAKVVRTGLR 682



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AILD+QIETG P+MLYKDA N KSNQQNL  I+
Sbjct: 470 KLWYAILDAQIETGGPFMLYKDAANAKSNQQNLGTIK 506



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 709 RKSNQQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
            K  ++N   VI +LYN VN + G    MIS + YEI+ +NA  L+SA+IY+RDF+YN +
Sbjct: 152 HKETRKNFSAVIADLYNYVNPKNGRPAGMISKETYEIVQENAAALDSAMIYERDFHYNLW 211

Query: 768 G-FKYDMWGVTPT 779
           G F   +W  T T
Sbjct: 212 GNFNLLIWYFTKT 224


>gi|313844113|ref|YP_004061776.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
 gi|312599498|gb|ADQ91520.1| hypothetical protein OlV1_143 [Ostreococcus lucimarinus virus OlV1]
          Length = 747

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 293/462 (63%), Positives = 358/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE    WSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD+ GE+F+ LY KYE E +    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEEESRATATVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLG IK SNLCTEI+E+T KDE AVCNLASIAL  Y++P  KT+++ KL +V K
Sbjct: 398 QKSNQKNLGVIKSSNLCTEILEFTDKDETAVCNLASIALPKYVDPETKTFDYEKLHEVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  R  FD +E++ +N +I
Sbjct: 458 TVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRHAFDSDEAKEINARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  DGPY+T+EGSP SQG+LQ+DMW       +DW ALKE+I + 
Sbjct: 518 FETMYHAALEASSELAEVDGPYETFEGSPASQGVLQFDMWEGETKLHYDWDALKERIKEK 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF +VN HL+ DL E+GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVDDLKEIGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP ++K LY+TVWEI  K V+DMAADRG FIDQSQS+N++
Sbjct: 638 SKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  246 bits (628), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 144/188 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW ALKE+I + G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 LQFDMWEGETKLHYDWDALKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF +VN HL+ DL E+GLW  +MKD ++   GSIQ+I  IP ++K LY+TVWE
Sbjct: 612 LRRTLAGEFVIVNKHLVDDLKEIGLWSKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAADRGRFIDQSQSMNLFMESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  120 bits (300), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 61/85 (71%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE    WSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GLSD+ GE+F+ LY KYE E
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEEE 362



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  R  FD +E++ +N +IFET+Y+ ALEAS E+A  DGPY+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRHAFDSDEAKEINARIFETMYHAALEASSELAEVDGPYETFEGSPAS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQ+DMW       +DW ALK      GL+
Sbjct: 549 QGVLQFDMWEGETKLHYDWDALKERIKEKGLR 580



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +  A V    +W AIL SQ ETGTPYMLYKDACN+KSNQ+NL VI+
Sbjct: 364 RATATVPAADVWKAILKSQTETGTPYMLYKDACNQKSNQKNLGVIK 409


>gi|314055218|ref|YP_004063556.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
 gi|313575109|emb|CBI70122.1| ribonucleoside-diphosphate reductase, alpha subunit [Ostreococcus
           tauri virus 2]
 gi|388548669|gb|AFK65871.1| ribonucleoside diphosphate reductase [Ostreococcus lucimarinus
           virus OlV6]
          Length = 747

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 292/462 (63%), Positives = 359/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD+ GE+F+ LY KYEAEG+    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEAEGRANAIVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EYT KDE AVCNLASIAL  Y+N   +T+++ KL ++ K
Sbjct: 398 KKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVNEETRTFDYEKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  R  FD +E++ +N +I
Sbjct: 458 IVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRYAFDSDEAKEMNARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ +LEASCE+A   G Y+T+EGSP SQG+LQ+DMW       +DW  LKE+I + 
Sbjct: 518 FETMYHASLEASCELAEAQGSYETFEGSPTSQGVLQFDMWEGETKLNYDWDVLKERIKEK 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF +VN HL+ DL ++GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVNDLKKIGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP  +K+LY+TVWEI  K V+DMAA RG FIDQSQS+N++
Sbjct: 638 SKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWEIKMKDVIDMAAQRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  241 bits (616), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/188 (59%), Positives = 142/188 (75%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW  LKE+I + G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 LQFDMWEGETKLNYDWDVLKERIKEKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF +VN HL+ DL ++GLW  +MKD ++   GSIQ+I  IP  +K+LY+TVWE
Sbjct: 612 LRRTLAGEFVIVNKHLVNDLKKIGLWSKDMKDLMVKAGGSIQNISDIPDDIKNLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAA RG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAAQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  126 bits (316), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSSLWIPDLFMKRVEEGGQWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD+ GE+F+ LY KYEAEG
Sbjct: 338 PDKAPGLSDAVGEEFEALYTKYEAEG 363



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 61/83 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  R  FD +E++ +N +IFET+Y+ +LEASCE+A   G Y+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRYAFDSDEAKEMNARIFETMYHASLEASCELAEAQGSYETFEGSPTS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG+LQ+DMW       +DW  LK
Sbjct: 549 QGVLQFDMWEGETKLNYDWDVLK 571



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A+V    +W AIL SQ ETGTPYMLYKDACN+KSNQ+NL  I+
Sbjct: 367 AIVPAADVWKAILKSQTETGTPYMLYKDACNKKSNQKNLGTIK 409


>gi|207345939|gb|EDZ72594.1| YER070Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 732

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 283/441 (64%), Positives = 359/441 (81%), Gaps = 5/441 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLSD +G++F+ LY +YE EG+  + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL  +I  ++     TYNF KL 
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           ++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD  E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW   P  +WDW  L++ 
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWEI QKT+++MAADR  +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGW 527
           LN+++      K++SMHF+GW
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGW 732



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/163 (63%), Positives = 130/163 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGIRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK  LI  NGSIQ +  +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGW 931
           I QKT+++MAADR  +IDQS SLN+++      K++SMHF+GW
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGW 732



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF  LWIPD FM+RVE +  W+L  
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +  GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 73/93 (78%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ+DMW   P  +WDW  L+   + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGIR 598



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+LY  VN  TG   PMISD  Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90  TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 35/37 (94%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423


>gi|410075974|ref|XP_003955569.1| hypothetical protein KAFR_0B01350 [Kazachstania africana CBS 2517]
 gi|372462152|emb|CCF56434.1| hypothetical protein KAFR_0B01350 [Kazachstania africana CBS 2517]
          Length = 847

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 283/468 (60%), Positives = 372/468 (79%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A +LEPWH D+FDF+E++KN G E++RARDLF  LWIPD FM+RVE+D +W+L  
Sbjct: 293 RPGAIAFFLEPWHPDVFDFIEMRKNHGDEKYRARDLFPALWIPDLFMKRVEADTKWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +   GLSD +G++F+ L+++YE EG+  + + ARKLW AILD+Q ETGTP+M YKDA N
Sbjct: 353 SSEAPGLSDVYGDEFEALFERYEREGRG-KTIKARKLWQAILDAQTETGTPFMCYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           +KSNQ+NLGTIK SNLC EI+EY++ +E AVCNLAS+ L  +I  ++     TYNF KL 
Sbjct: 412 QKSNQKNLGTIKSSNLCCEIIEYSNPEETAVCNLASVCLPTFIEYSEDNKTSTYNFEKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            ++K++T+NLN++ID N+YPV EAR SNM+HRPI +GVQGLAD F+ +RLPF+ +E+  L
Sbjct: 472 KISKVITRNLNRVIDNNYYPVPEARKSNMKHRPIALGVQGLADTFMLLRLPFESDEATKL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFET+Y+ +LEASCE+A  +G Y+T++GSP SQGILQ D+W   P  +WDW  L++ 
Sbjct: 532 NKQIFETMYHASLEASCELAQEEGAYETFQGSPASQGILQMDLWNSKPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K+G+RNSL +APMPTAST+QI+G NE FEP TSN+Y RR +SGEFQ+VN +LLRDLV+
Sbjct: 592 IVKYGIRNSLTMAPMPTASTSQIMGFNECFEPVTSNMYQRRTISGEFQIVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD MK  LI  NGSIQD+  +P ++K+LYKTVWEI QK +LDMAADR  +IDQS S
Sbjct: 652 LGIWDDGMKQYLITQNGSIQDLPNVPDEIKELYKTVWEISQKKILDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID++
Sbjct: 712 LNLFIRAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQS 759



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/204 (59%), Positives = 157/204 (76%), Gaps = 3/204 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + D+W   P  +WDW  L++ I K+G+RNSL +APMPTAST+QI+G NE FEP TSN+Y
Sbjct: 570 LQMDLWNSKPFGMWDWETLRKDIVKYGIRNSLTMAPMPTASTSQIMGFNECFEPVTSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR +SGEFQ+VN +LLRDLV+LG+WDD MK  LI  NGSIQD+  +P ++K+LYKTVWE
Sbjct: 630 QRRTISGEFQIVNPYLLRDLVDLGIWDDGMKQYLITQNGSIQDLPNVPDEIKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +LDMAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKKILDMAADRSIYIDQSHSLNLFIRAPTMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKT---KMANAMASKDT 969
            AIQFTID++   + AN +A  +T
Sbjct: 750 AAIQFTIDQSVADQAANNIAIMET 773



 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A +LEPWH D+FDF+E++KN G E++RARDLF  LWIPD FM+RVE+D +W+L  
Sbjct: 293 RPGAIAFFLEPWHPDVFDFIEMRKNHGDEKYRARDLFPALWIPDLFMKRVEADTKWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
            +   GLSD +G++F+ L+++YE EG
Sbjct: 353 SSEAPGLSDVYGDEFEALFERYEREG 378



 Score =  119 bits (299), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPF+ +E+  LNKQIFET+Y+ +LEASCE+A  +G Y+T++GSP 
Sbjct: 506 ALGVQGLADTFMLLRLPFESDEATKLNKQIFETMYHASLEASCELAQEEGAYETFQGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ D+W   P  +WDW  L+   + YG++
Sbjct: 566 SQGILQMDLWNSKPFGMWDWETLRKDIVKYGIR 598



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 48/63 (76%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +Q  +V+++LYN VN  TG   P+IS + +EIIMKN D ++S I+YDRD+ +N+F
Sbjct: 87  HKQTKKQFSQVMDDLYNYVNPTTGKHAPVISQRVHEIIMKNKDVIDSTIVYDRDYKFNYF 146

Query: 768 GFK 770
           G+K
Sbjct: 147 GYK 149



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW AILD+Q ETGTP+M YKDA N+KSNQ+NL  I+
Sbjct: 387 KLWQAILDAQTETGTPFMCYKDAANQKSNQKNLGTIK 423


>gi|428169292|gb|EKX38227.1| hypothetical protein GUITHDRAFT_158515 [Guillardia theta CCMP2712]
          Length = 831

 Score =  630 bits (1624), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 287/473 (60%), Positives = 378/473 (79%), Gaps = 2/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+YLEPWH +IF+FLELKKN G E+ RARDLFY LW+PD FM+R E+D  WSL C
Sbjct: 292 RPGAFAVYLEPWHAEIFEFLELKKNFGSEDLRARDLFYALWMPDLFMKRCEADGAWSLFC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL +++GEKF++LY++YE EG+  + + AR+LWFAIL++Q+E G PY+LYKDA N
Sbjct: 352 PVEAPGLCETYGEKFEELYERYEREGRARKTIKARELWFAILEAQVENGIPYLLYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG IKCSNLCTEI+EYTSKDEVAVCNLASI L  ++   +  ++   L +V  
Sbjct: 412 EKSNQKNLGIIKCSNLCTEIMEYTSKDEVAVCNLASICLPRFV--VEGQFDHKLLFEVTI 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLNKIID+N YPV+EA+ SN RHRPIGIGVQGLAD+F+ +RLPF+  E+R LN+ I
Sbjct: 470 VITRNLNKIIDINLYPVKEAQTSNFRHRPIGIGVQGLADVFLLLRLPFESEEARQLNRDI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A+ AS ++A   G Y ++ GSP S G+LQ+D+WG  P+  WDW +LKE I +H
Sbjct: 530 FETIYFAAMTASNQLAKDHGAYSSFRGSPASMGLLQFDLWGAEPSPRWDWTSLKESIKEH 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSL +APMPTASTAQI+GNNE FEPYTSNIY+RRV++G+F V+N HLL+DL+ LGLW
Sbjct: 590 GLRNSLTVAPMPTASTAQIMGNNECFEPYTSNIYNRRVMAGDFLVLNPHLLKDLIALGLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              MK +++  +GSIQDI  IP+ +++LYKT WEI Q+ ++DMAADRGAFIDQSQSLN++
Sbjct: 650 SQKMKHRIMAYDGSIQDILEIPKDIRELYKTAWEIKQRCLIDMAADRGAFIDQSQSLNLF 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           +   + AK++SMHF+ W+ GLKTG+YYLRT+ AA+AI+FT+D + +  A  S+
Sbjct: 710 LEAPDTAKLTSMHFYAWRKGLKTGVYYLRTRAAADAIKFTLDHSTVVEARLSR 762



 Score =  272 bits (695), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 161/199 (80%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WG  P+  WDW +LKE I +HG+RNSL +APMPTASTAQI+GNNE FEPYTSNIY
Sbjct: 564 LQFDLWGAEPSPRWDWTSLKESIKEHGLRNSLTVAPMPTASTAQIMGNNECFEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRV++G+F V+N HLL+DL+ LGLW   MK +++  +GSIQDI  IP+ +++LYKT WE
Sbjct: 624 NRRVMAGDFLVLNPHLLKDLIALGLWSQKMKHRIMAYDGSIQDILEIPKDIRELYKTAWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADRGAFIDQSQSLN+++   + AK++SMHF+ W+ GLKTG+YYLRT+ AA
Sbjct: 684 IKQRCLIDMAADRGAFIDQSQSLNLFLEAPDTAKLTSMHFYAWRKGLKTGVYYLRTRAAA 743

Query: 949 NAIQFTIDKTKMANAMASK 967
           +AI+FT+D + +  A  S+
Sbjct: 744 DAIKFTLDHSTVVEARLSR 762



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 60/75 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+YLEPWH +IF+FLELKKN G E+ RARDLFY LW+PD FM+R E+D  WSL C
Sbjct: 292 RPGAFAVYLEPWHAEIFEFLELKKNFGSEDLRARDLFYALWMPDLFMKRCEADGAWSLFC 351

Query: 61  PNACRGLSDSWGEKF 75
           P    GL +++GEKF
Sbjct: 352 PVEAPGLCETYGEKF 366



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F+ +RLPF+  E+R LN+ IFETIY+ A+ AS ++A   G Y ++ GSP S
Sbjct: 501 IGVQGLADVFLLLRLPFESEEARQLNRDIFETIYFAAMTASNQLAKDHGAYSSFRGSPAS 560

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G+LQ+D+WG  P+  WDW +LK     +GL+
Sbjct: 561 MGLLQFDLWGAEPSPRWDWTSLKESIKEHGLR 592



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 45/65 (69%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ + Q   + I+ LYN V+ ++G + P I+   YEI+++NA+ L++AI Y RDF ++
Sbjct: 84  ALHKVTQQTFSQKIKALYNHVHSKSGAKGPKIASDVYEIVIENAETLDAAIDYSRDFTFD 143

Query: 766 FFGFK 770
           +FG+K
Sbjct: 144 YFGYK 148



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LWFAIL++Q+E G PY+LYKDA N KSNQ+NL +I+
Sbjct: 387 ELWFAILEAQVENGIPYLLYKDAANEKSNQKNLGIIK 423


>gi|354546080|emb|CCE42809.1| hypothetical protein CPAR2_204520 [Candida parapsilosis]
          Length = 832

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 292/493 (59%), Positives = 375/493 (76%), Gaps = 5/493 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH D+F+ L ++KN G EEFR RDLFYGLWIPD FM+RV+S   WSL  
Sbjct: 302 RPGAFAIYLEPWHADVFEILNMRKNHGNEEFRTRDLFYGLWIPDLFMQRVKSGGDWSLFS 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G +F +LY+KYEA+G     + A+KLW AIL+SQ ETG PYMLYKDACN
Sbjct: 362 PDVAPGLSDVYGSEFIELYEKYEAQGLASATIKAQKLWLAILESQTETGGPYMLYKDACN 421

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ NLGTIK SNLC EIVEY+S  E AVCNLAS+ L  ++   + +  ++F KL  V
Sbjct: 422 QKTNQSNLGTIKSSNLCCEIVEYSSPSETAVCNLASLGLPSFLQSTEDSIEFDFDKLHSV 481

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLNK+IDV  YPV  A  SN ++RPI IGVQGLADLF+++RLPFD  E++ LN 
Sbjct: 482 TKVVTRNLNKVIDVTRYPVNSAERSNKKNRPIAIGVQGLADLFLELRLPFDSLEAKKLNS 541

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E++  +GPY T+ GSP SQ ILQ+DMW   P    DW  LK+ + 
Sbjct: 542 QIFETIYHAAVEASLELSILEGPYSTFAGSPASQDILQFDMWNQKPEFYDDWDQLKDNVR 601

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y+RRV+SGEFQVVN +L+RDLV+LG
Sbjct: 602 SHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLYTRRVISGEFQVVNKYLIRDLVDLG 661

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+  ++ ++I + GSIQ+I  IP  ++ LY+TVWE+ QK ++DMAADRG FIDQSQS+N
Sbjct: 662 IWNSALRSKIIQDGGSIQNIPVIPGDIRKLYRTVWELKQKDIIDMAADRGKFIDQSQSMN 721

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA---MASKDA 565
           IYM+     K++S HFH W+ GLKTGMYYLRT+ AA AIQFT+DK ++A+A      K  
Sbjct: 722 IYMSNPTIGKLTSCHFHAWEKGLKTGMYYLRTQAAARAIQFTVDKEEVASAEHQQVQKSL 781

Query: 566 RSQEEIQADQEQA 578
           + ++ I+  Q ++
Sbjct: 782 KRKKYIEGSQRRS 794



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/217 (55%), Positives = 164/217 (75%), Gaps = 3/217 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P    DW  LK+ +  HG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 578 LQFDMWNQKPEFYDDWDQLKDNVRSHGLRNSLLVAPMPTASTSQILGFNECFEPYTSNLY 637

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRV+SGEFQVVN +L+RDLV+LG+W+  ++ ++I + GSIQ+I  IP  ++ LY+TVWE
Sbjct: 638 TRRVISGEFQVVNKYLIRDLVDLGIWNSALRSKIIQDGGSIQNIPVIPGDIRKLYRTVWE 697

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADRG FIDQSQS+NIYM+     K++S HFH W+ GLKTGMYYLRT+ AA
Sbjct: 698 LKQKDIIDMAADRGKFIDQSQSMNIYMSNPTIGKLTSCHFHAWEKGLKTGMYYLRTQAAA 757

Query: 949 NAIQFTIDKTKMANA---MASKDTRSQEEIQADQEQA 982
            AIQFT+DK ++A+A      K  + ++ I+  Q ++
Sbjct: 758 RAIQFTVDKEEVASAEHQQVQKSLKRKKYIEGSQRRS 794



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 69/87 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH D+F+ L ++KN G EEFR RDLFYGLWIPD FM+RV+S   WSL  
Sbjct: 302 RPGAFAIYLEPWHADVFEILNMRKNHGNEEFRTRDLFYGLWIPDLFMQRVKSGGDWSLFS 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +G +F +LY+KYEA+GL
Sbjct: 362 PDVAPGLSDVYGSEFIELYEKYEAQGL 388



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/187 (37%), Positives = 105/187 (56%), Gaps = 7/187 (3%)

Query: 545 NAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQ 604
           ++I+F  DK      + +++    + I   +    +A    + N+   IGVQGLADLF++
Sbjct: 469 DSIEFDFDKLHSVTKVVTRNL--NKVIDVTRYPVNSAERSNKKNRPIAIGVQGLADLFLE 526

Query: 605 MRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT 664
           +RLPFD  E++ LN QIFETIY+ A+EAS E++  +GPY T+ GSP SQ ILQ+DMW   
Sbjct: 527 LRLPFDSLEAKKLNSQIFETIYHAAVEASLELSILEGPYSTFAGSPASQDILQFDMWNQK 586

Query: 665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR--KSNQQNLEVIEE 721
           P    DW  LK     +GL+   ++L + + T  T  +L  + C     SN     VI  
Sbjct: 587 PEFYDDWDQLKDNVRSHGLR--NSLLVAPMPTASTSQILGFNECFEPYTSNLYTRRVISG 644

Query: 722 LYNMVNK 728
            + +VNK
Sbjct: 645 EFQVVNK 651



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D++G    +L++    + LA   +   KLW AIL+SQ ETG PYMLYKDACN+K+NQ NL
Sbjct: 370 DVYGSEFIELYEKYEAQGLASATIKAQKLWLAILESQTETGGPYMLYKDACNQKTNQSNL 429

Query: 717 EVIE 720
             I+
Sbjct: 430 GTIK 433


>gi|396082286|gb|AFN83896.1| ribonucleoside diphosphate reductase [Encephalitozoon romaleae
           SJ-2008]
          Length = 769

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 286/474 (60%), Positives = 379/474 (79%), Gaps = 7/474 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIYLEPWH +IFDFL+++K+TG EEFRARD+F  LW+ D FM RV++D +WSL C
Sbjct: 288 RPGSIAIYLEPWHMEIFDFLDIRKSTGPEEFRARDIFIALWVNDLFMERVKNDEEWSLFC 347

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
           P+   GL D WGE+F++LY KYE   K I +  VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 348 PSQAVGLEDMWGEEFNELYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 404

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           CNR SNQQ+LG IK SNLCTEIVEY+S DEV+VCNLASI+L M++   +  ++F   ++V
Sbjct: 405 CNRLSNQQHLGIIKSSNLCTEIVEYSSGDEVSVCNLASISLPMFVK--NGMFDFESFRNV 462

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I+T NLNK+ID ++YPVEEA+ SNM+HRPIGIGVQGLADLF  ++LPF+ +E+R LNK
Sbjct: 463 VRIITINLNKVIDSSYYPVEEAKTSNMKHRPIGIGVQGLADLFAILKLPFESDEARSLNK 522

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +IFE +YY ALEASCE+A  +GP+ +Y+GSP+S+GI  +++ G   ++ WDW  L+E+I 
Sbjct: 523 EIFEAMYYFALEASCELAESEGPFPSYKGSPISKGIFHFELAGKKASNKWDWEGLRERIK 582

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG RNSLLIA MPTA T+QI GNNE+FEPY SNIY+RR  +GEFQ+VN +L+ DLV+LG
Sbjct: 583 KHGTRNSLLIALMPTAGTSQIFGNNEAFEPYASNIYTRRTHAGEFQIVNQYLIDDLVKLG 642

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK+ +I N GSIQ+I  IP K++++YKT WEI  ++V+D+AADR AFIDQSQSLN
Sbjct: 643 LWSYEMKNLIIENEGSIQNIISIPPKIREIYKTAWEIKMRSVIDLAADRQAFIDQSQSLN 702

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           I++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  +AI+FT+DK      ++S
Sbjct: 703 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 756



 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 155/198 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++ G   ++ WDW  L+E+I KHG RNSLLIA MPTA T+QI GNNE+FEPY SNIY
Sbjct: 559 FHFELAGKKASNKWDWEGLRERIKKHGTRNSLLIALMPTAGTSQIFGNNEAFEPYASNIY 618

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN +L+ DLV+LGLW   MK+ +I N GSIQ+I  IP K++++YKT WE
Sbjct: 619 TRRTHAGEFQIVNQYLIDDLVKLGLWSYEMKNLIIENEGSIQNIISIPPKIREIYKTAWE 678

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  ++V+D+AADR AFIDQSQSLNI++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  
Sbjct: 679 IKMRSVIDLAADRQAFIDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 738

Query: 949 NAIQFTIDKTKMANAMAS 966
           +AI+FT+DK      ++S
Sbjct: 739 SAIKFTVDKKLAEKTLSS 756



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIYLEPWH +IFDFL+++K+TG EEFRARD+F  LW+ D FM RV++D +WSL C
Sbjct: 288 RPGSIAIYLEPWHMEIFDFLDIRKSTGPEEFRARDIFIALWVNDLFMERVKNDEEWSLFC 347

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL D WGE+F++LY KYE
Sbjct: 348 PSQAVGLEDMWGEEFNELYCKYE 370



 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLF  ++LPF+ +E+R LNK+IFE +YY ALEASCE+A  +GP+ +Y+GSP+S
Sbjct: 496 IGVQGLADLFAILKLPFESDEARSLNKEIFEAMYYFALEASCELAESEGPFPSYKGSPIS 555

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI  +++ G   ++ WDW  L+
Sbjct: 556 KGIFHFELAGKKASNKWDWEGLR 578



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           SQ +   DMWG    +L+  +       +V   KLW AI+++QIETGTPYM YKDACNR 
Sbjct: 349 SQAVGLEDMWGEEFNELYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 408

Query: 711 SNQQNLEVIE 720
           SNQQ+L +I+
Sbjct: 409 SNQQHLGIIK 418


>gi|312066374|ref|XP_003136240.1| ribonucleoside-diphosphate reductase large subunit [Loa loa]
          Length = 1038

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/492 (59%), Positives = 368/492 (74%), Gaps = 48/492 (9%)

Query: 113 KKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKY 172
           +KN G E  R RDLF+GLW+PD FM RV  D  WSLMCP  C GL DSWGE F+ LY +Y
Sbjct: 294 RKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMCPAECPGLEDSWGEAFEKLYMQY 353

Query: 173 EAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVE 232
           E EG++ +QVPARKLW  I+ +QIETG PYM+YKD CNRK+NQQNLGTIKCSNLCTE+V 
Sbjct: 354 EEEGRYRKQVPARKLWETIVSTQIETGMPYMVYKDTCNRKTNQQNLGTIKCSNLCTEVVL 413

Query: 233 YTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARN 292
           Y+S++E+AVCNLASIAL+ +++ ++ T++F  L+++ K+V +NLNK+ID N+YPV EA  
Sbjct: 414 YSSREEIAVCNLASIALSRFVS-SEMTFDFKMLREITKVVVRNLNKVIDRNYYPVPEAER 472

Query: 293 SNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPY 352
           SN RHRPIGIGVQGLAD FI MR PF   ++R LNK+IFET+YY ALEASCE+A   GPY
Sbjct: 473 SNKRHRPIGIGVQGLADAFILMRYPFTSEKARDLNKRIFETMYYAALEASCELAMEQGPY 532

Query: 353 QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
           ++YE SP    ILQ+DMWGVTPT+ WDW  L++KIA +G+RNSLL+APMPTASTAQILGN
Sbjct: 533 ESYERSP----ILQFDMWGVTPTNQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGN 588

Query: 413 NESFEPYTSNIYSRRVLSGEFQ-------------------------------------- 434
           NES EPYTSN+Y+R VLSG FQ                                      
Sbjct: 589 NESIEPYTSNVYTRNVLSGSFQVKFHDTLLIRFERITSEITFLQSFLLIAFLCLEDYVIS 648

Query: 435 --VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
             V N HL+ DL+ L LWDD+MK ++I N GSI++IE IPQ+++DLYKTVWE+ Q+ ++D
Sbjct: 649 LKVFNMHLMNDLMRLDLWDDDMKLEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIID 708

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA DRGAFID SQSLNI++A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA +A+QFT+D
Sbjct: 709 MAVDRGAFIDHSQSLNIFIARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVD 768

Query: 553 KTKM---ANAMA 561
           KT++   ANA A
Sbjct: 769 KTRLKDYANANA 780



 Score =  278 bits (712), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 133/240 (55%), Positives = 169/240 (70%), Gaps = 43/240 (17%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGVTPT+ WDW  L++KIA +G+RNSLL+APMPTASTAQILGNNES EPYTSN+Y
Sbjct: 541 LQFDMWGVTPTNQWDWETLRKKIAMYGIRNSLLLAPMPTASTAQILGNNESIEPYTSNVY 600

Query: 829 SRRVLSGEFQV----------------------------------------VNHHLLRDL 848
           +R VLSG FQV                                         N HL+ DL
Sbjct: 601 TRNVLSGSFQVKFHDTLLIRFERITSEITFLQSFLLIAFLCLEDYVISLKVFNMHLMNDL 660

Query: 849 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 908
           + L LWDD+MK ++I N GSI++IE IPQ+++DLYKTVWE+ Q+ ++DMA DRGAFID S
Sbjct: 661 MRLDLWDDDMKLEIIKNKGSIRNIERIPQEIRDLYKTVWEMSQRDIIDMAVDRGAFIDHS 720

Query: 909 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM---ANAMA 965
           QSLNI++A  NY  ++SMHF+GW+ GLKTGMYYLRT+PA +A+QFT+DKT++   ANA A
Sbjct: 721 QSLNIFIARPNYGNITSMHFYGWQKGLKTGMYYLRTRPAVDAVQFTVDKTRLKDYANANA 780



 Score =  122 bits (307), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 4/92 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF   ++R LNK+IFET+YY ALEASCE+A   GPY++YE SP  
Sbjct: 482 IGVQGLADAFILMRYPFTSEKARDLNKRIFETMYYAALEASCELAMEQGPYESYERSP-- 539

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
             ILQ+DMWGVTPT+ WDW  L+    +YG++
Sbjct: 540 --ILQFDMWGVTPTNQWDWETLRKKIAMYGIR 569



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 45/64 (70%)

Query: 23  KKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKY 82
           +KN G E  R RDLF+GLW+PD FM RV  D  WSLMCP  C GL DSWGE F+ LY +Y
Sbjct: 294 RKNVGDELERCRDLFFGLWVPDLFMERVRDDKVWSLMCPAECPGLEDSWGEAFEKLYMQY 353

Query: 83  EAEG 86
           E EG
Sbjct: 354 EEEG 357



 Score = 60.1 bits (144), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  I+ +QIETG PYM+YKD CNRK+NQQNL  I+
Sbjct: 367 KLWETIVSTQIETGMPYMVYKDTCNRKTNQQNLGTIK 403



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           +SQ ++     GVT  +L + AA ++ A +      +A L S+I             ++K
Sbjct: 49  ISQKVIAGLYKGVTTVELDNLAA-EIAADMITKHPDYATLASRIAVSN--------LHKK 99

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +   +V + LYN  + ++G   P+IS   ++II  NAD L+SAII++RDF Y +FG K
Sbjct: 100 TEKLFSKVSKRLYNATHPKSGRHMPLISKNIFDIIQNNADILDSAIIHERDFCYTYFGLK 159


>gi|73852902|ref|YP_294186.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
 gi|72415618|emb|CAI65855.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 86]
          Length = 746

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 284/444 (63%), Positives = 357/444 (80%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE+EGK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D T++   L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK--DGTFDHQHLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  ++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+SQG  Q+D+W VTP+  W+W  L+  + KH
Sbjct: 529 FETMYFAAMTASCDLAKTKGKYSTYEGSPLSQGKFQFDLWNVTPSVRWNWDTLRSNVKKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSL+ APMPTASTAQILGNNE FEP+TSN+YSRRVLSGEF VVN +L++DL + GLW
Sbjct: 589 GTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVVNKYLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DMAADRGAFI QSQS N++
Sbjct: 649 GDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 138/170 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W VTP+  W+W  L+  + KHG RNSL+ APMPTASTAQILGNNE FEP+TSN+Y
Sbjct: 563 FQFDLWNVTPSVRWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN +L++DL + GLW D+MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DMAADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE+EG
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEG 376



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  ++R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKMAFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG  Q+D+W VTP+  W+W  L+
Sbjct: 560 QGKFQFDLWNVTPSVRWNWDTLR 582



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V++ LYN VN +TG  +P+I+D   E I  NA+  +  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMDSLYNYVNTKTGKWSPLIADDIIECIRSNAEVFDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|347600972|gb|AEP15458.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 207]
 gi|347601397|gb|AEP15882.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 208]
 gi|357972865|gb|AET98138.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 201]
          Length = 746

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 285/444 (64%), Positives = 356/444 (80%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE+EGK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D +++   L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK--DGSFDHQHLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  ++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC+IA   G Y TYEGSP+S G  Q+DMW VTP+D WDW  L+  + K+
Sbjct: 529 FETMYFAAMTASCDIAKTKGRYSTYEGSPLSNGKFQFDMWNVTPSDRWDWNTLRSNVKKY 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSLL APMPTASTAQILG NE FEP+TSN+YSRRVLSGEF VVN +L++DL + GLW
Sbjct: 589 GARNSLLTAPMPTASTAQILGFNECFEPFTSNLYSRRVLSGEFPVVNKYLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            DNMK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DM+ADRGAFI QSQS N++
Sbjct: 649 GDNMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMSADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/170 (64%), Positives = 138/170 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW VTP+D WDW  L+  + K+G RNSLL APMPTASTAQILG NE FEP+TSN+Y
Sbjct: 563 FQFDMWNVTPSDRWDWNTLRSNVKKYGARNSLLTAPMPTASTAQILGFNECFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN +L++DL + GLW DNMK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNKYLVKDLSDRGLWGDNMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DM+ADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMSADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE+EG
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEG 376



 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/92 (53%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  ++R+LNK+IFET+Y+ A+ ASC+IA   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKMAFDSPDARVLNKEIFETMYFAAMTASCDIAKTKGRYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G  Q+DMW VTP+D WDW  L+     YG +
Sbjct: 560 NGKFQFDMWNVTPSDRWDWNTLRSNVKKYGAR 591



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V+E LYN VN +TG  +P+I+D   E I  NA  L+  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMESLYNYVNTKTGQWSPLIADDIIECIRSNAVVLDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|357541940|gb|AET84702.1| ribonucleotide reductase [Ostreococcus lucimarinus virus OlV4]
          Length = 607

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/462 (63%), Positives = 358/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE    WSL C
Sbjct: 138 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLFC 197

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD+ GE+F+ LY KYE EG+    VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 198 PDKAPGLSDAVGEEFEALYTKYEEEGRATATVPAADVWKAILKSQTETGTPYMLYKDACN 257

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLG IK SNLCTEI+E+T KDE AVCNLASIAL  Y++   KT+++ KL +V K
Sbjct: 258 QKSNQKNLGVIKSSNLCTEILEFTDKDETAVCNLASIALPKYVDSETKTFDYEKLHEVTK 317

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  R  FD +E++ +N +I
Sbjct: 318 TVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRHAFDSDEAKEINARI 377

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  DGPY+T+EGSP SQG+LQ+DMW       +DW ALKE+I + 
Sbjct: 378 FETMYHAALEASSELAEVDGPYETFEGSPASQGVLQFDMWEGETKLHYDWDALKERIKER 437

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF +VN HL+ DL E+GLW
Sbjct: 438 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVDDLKEIGLW 497

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +MKD ++   GSIQ+I  IP ++K LY+TVWEI  K V+DMAADRG FIDQSQS+N++
Sbjct: 498 SKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWEIKMKDVIDMAADRGRFIDQSQSMNLF 557

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 558 MESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKARPIQFSLE 599



 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 144/188 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW       +DW ALKE+I + G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 412 LQFDMWEGETKLHYDWDALKERIKERGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 471

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF +VN HL+ DL E+GLW  +MKD ++   GSIQ+I  IP ++K LY+TVWE
Sbjct: 472 LRRTLAGEFVIVNKHLVDDLKEIGLWSKDMKDLMVKAGGSIQNIVDIPDEIKKLYRTVWE 531

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 532 IKMKDVIDMAADRGRFIDQSQSMNLFMESPTMSKLSSMHMYSWKKGLKTGMYYLRSKAKA 591

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 592 RPIQFSLE 599



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 62/86 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE    WSL C
Sbjct: 138 RKGSIAVYLEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEESGNWSLFC 197

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD+ GE+F+ LY KYE EG
Sbjct: 198 PDKAPGLSDAVGEEFEALYTKYEEEG 223



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  R  FD +E++ +N +IFET+Y+ ALEAS E+A  DGPY+T+EGSP S
Sbjct: 349 LGVQGLADVFILCRHAFDSDEAKEINARIFETMYHAALEASSELAEVDGPYETFEGSPAS 408

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQ+DMW       +DW ALK      GL+
Sbjct: 409 QGVLQFDMWEGETKLHYDWDALKERIKERGLR 440



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +  A V    +W AIL SQ ETGTPYMLYKDACN+KSNQ+NL VI+
Sbjct: 224 RATATVPAADVWKAILKSQTETGTPYMLYKDACNQKSNQKNLGVIK 269


>gi|313768342|ref|YP_004062022.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599038|gb|ADQ91062.1| hypothetical protein MpV1_139c [Micromonas sp. RCC1109 virus MpV1]
          Length = 749

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/469 (62%), Positives = 361/469 (76%), Gaps = 2/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  +WIPD FM+RVE    WSL C
Sbjct: 278 RKGSIAVYLEPWHSDIMDFLELRLNQGDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G++F+DLY KYE EG     VPA  +W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAKGLSDVYGQEFEDLYTKYEEEGLANATVPAADVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG IK SNLCTEI+EYT KDE +VCNLASIAL  Y+N   KT+++ KL ++ K
Sbjct: 398 SKSNQKNLGVIKSSNLCTEILEYTDKDETSVCNLASIALPKYVNKETKTFDYDKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID NFYPVE AR SNM+HRPIG+GVQGLAD+FI   LPFDC ESRL+N  I
Sbjct: 458 TVTKNLNRVIDRNFYPVETARRSNMKHRPIGLGVQGLADVFILCGLPFDCEESRLMNAHI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTP-TDLWDWAALKEKIA 388
           FET+Y+ ALEAS E+A  +G Y++++GSP ++G+LQ DMW G T  +  +DW A++E++ 
Sbjct: 518 FETMYHAALEASSELAEVEGSYESFKGSPAAEGVLQPDMWDGETKFSGRYDWDAMRERVK 577

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL ++G
Sbjct: 578 TKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVDDLKKVG 637

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MKD ++   GSIQ+I  IP  +K+LYKTVWEI QK ++DMAADRG FIDQSQS+N
Sbjct: 638 LWSKEMKDLMVKAGGSIQNIVDIPDDIKNLYKTVWEISQKCIIDMAADRGRFIDQSQSMN 697

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           ++M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++   MA
Sbjct: 698 LFMESPTLSKLSSMHMYAWKAGLKTGMYYLRSKAKARPIQFSLEPDCMA 746



 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 116/192 (60%), Positives = 146/192 (76%), Gaps = 2/192 (1%)

Query: 772 DMW-GVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYS 829
           DMW G T  +  +DW A++E++   G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY 
Sbjct: 555 DMWDGETKFSGRYDWDAMRERVKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYL 614

Query: 830 RRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           RR L+GEF VVN HL+ DL ++GLW   MKD ++   GSIQ+I  IP  +K+LYKTVWEI
Sbjct: 615 RRTLAGEFVVVNKHLVDDLKKVGLWSKEMKDLMVKAGGSIQNIVDIPDDIKNLYKTVWEI 674

Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
            QK ++DMAADRG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A 
Sbjct: 675 SQKCIIDMAADRGRFIDQSQSMNLFMESPTLSKLSSMHMYAWKAGLKTGMYYLRSKAKAR 734

Query: 950 AIQFTIDKTKMA 961
            IQF+++   MA
Sbjct: 735 PIQFSLEPDCMA 746



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 65/87 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLEL+ N G EE R RDLF  +WIPD FM+RVE    WSL C
Sbjct: 278 RKGSIAVYLEPWHSDIMDFLELRLNQGDEEARCRDLFSAMWIPDLFMKRVEEGGNWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G++F+DLY KYE EGL
Sbjct: 338 PDKAKGLSDVYGQEFEDLYTKYEEEGL 364



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 68/94 (72%), Gaps = 2/94 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI   LPFDC ESRL+N  IFET+Y+ ALEAS E+A  +G Y++++GSP +
Sbjct: 489 LGVQGLADVFILCGLPFDCEESRLMNAHIFETMYHAALEASSELAEVEGSYESFKGSPAA 548

Query: 653 QGILQYDMW-GVTP-TDLWDWAALKVLALVYGLK 684
           +G+LQ DMW G T  +  +DW A++      GL+
Sbjct: 549 EGVLQPDMWDGETKFSGRYDWDAMRERVKTKGLR 582



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 52/110 (47%), Gaps = 30/110 (27%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE---------------- 721
           A V    +W AIL SQ ETGTPYMLYKDACN KSNQ+NL VI+                 
Sbjct: 367 ATVPAADVWKAILKSQTETGTPYMLYKDACNSKSNQKNLGVIKSSNLCTEILEYTDKDET 426

Query: 722 ---------LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDF 762
                    L   VNKET T      DK +EI       LN  I  DR+F
Sbjct: 427 SVCNLASIALPKYVNKETKT---FDYDKLHEITKTVTKNLNRVI--DRNF 471


>gi|255587584|ref|XP_002534320.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
 gi|223525502|gb|EEF28063.1| ribonucleoside-diphosphate reductase large chain, putative [Ricinus
           communis]
          Length = 776

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 300/461 (65%), Positives = 362/461 (78%), Gaps = 19/461 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWS+ C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSVFC 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D WGE+F+ LY +YE EGK  + V A+ LWF IL SQIETGTPYM++KD  N
Sbjct: 353 PNEAPGLADCWGEEFERLYTQYEREGKAKKVVQAQNLWFEILKSQIETGTPYMVFKDTSN 412

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---------NPA----- 256
           RKSNQQNLGTIK SNLCTEI+EYTS  E AVCNLASIAL  ++         +P+     
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPMESHPSKVVGS 472

Query: 257 ----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
               ++ ++F KL +V ++VT NLNKIIDVN+YPVE A+ SN RHRPIGIGVQGLAD FI
Sbjct: 473 RGSKNRYFDFDKLAEVTEVVTCNLNKIIDVNYYPVENAKRSNFRHRPIGIGVQGLADAFI 532

Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
            + + FD  E++ LNK+IFETIYY AL+AS EIA RDGPY+TY+GSPVS+GILQ DMWGV
Sbjct: 533 LLGMAFDSPEAQQLNKEIFETIYYHALKASSEIAGRDGPYETYDGSPVSKGILQPDMWGV 592

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           TP+  W W AL+E I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSSRWSWNALREMIFKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP  LK +YKTVWEI QKT++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPDDLKLIYKTVWEIKQKTLVD 712

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGW-KLGLK 532
           MA DRG +IDQSQSLNI+M + N+ K++S+HF+ W KL LK
Sbjct: 713 MAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKLFLK 753



 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 112/166 (67%), Positives = 135/166 (81%), Gaps = 1/166 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWGVTP+  W W AL+E I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWGVTPSSRWSWNALREMIFKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I  +GS+Q I  IP  LK +YKTVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPDDLKLIYKTVWEIKQ 707

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGW-KLGLK 936
           KT++DMA DRG +IDQSQSLNI+M + N+ K++S+HF+ W KL LK
Sbjct: 708 KTLVDMAVDRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKLFLK 753



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DIF+FL+L+KN GKEE RARDLFY LW+PD FM RV+S+ QWS+ C
Sbjct: 293 RKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSVFC 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D WGE+F+ LY +YE EG
Sbjct: 353 PNEAPGLADCWGEEFERLYTQYEREG 378



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK+IFETIYY AL+AS EIA RDGPY+TY+GSPVS
Sbjct: 522 IGVQGLADAFILLGMAFDSPEAQQLNKEIFETIYYHALKASSEIAGRDGPYETYDGSPVS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWGVTP+  W W AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 582 KGILQPDMWGVTPSSRWSWNALREMIFKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 639

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNK 677



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 42/54 (77%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           E I+ +YN  N+ +G + P+I+D  Y IIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96  ETIKVMYNHFNERSGLKAPLIADDVYNIIMKNAARLDSEIIYDRDFDYDYFGFK 149



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 33/46 (71%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYM++KD  NRKSNQQNL  I+
Sbjct: 379 KAKKVVQAQNLWFEILKSQIETGTPYMVFKDTSNRKSNQQNLGTIK 424


>gi|209171046|ref|YP_002268193.1| agip163 [Agrotis ipsilon multiple nucleopolyhedrovirus]
 gi|208436637|gb|ACI28864.1| unknown [Agrotis ipsilon multiple nucleopolyhedrovirus]
          Length = 772

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 277/455 (60%), Positives = 364/455 (80%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI+  L LK+N G E+ +ARDL Y LW+PD FMRRV +D  WSLMC
Sbjct: 285 RKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDMWSLMC 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+ LY++YE+EG++ ++V A+ L   I+++Q+ETG PYML+KDACN
Sbjct: 345 PHQCPGLADCYGDEFERLYERYESEGRYRQRVRAQDLHRFIVETQVETGGPYMLFKDACN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLG IKCSNLC EIV+Y+  +E AVCNLASIA+N  +   + TY+F KLK + K
Sbjct: 405 RKSNQQNLGVIKCSNLCAEIVQYSDAEETAVCNLASIAVNRCVRVDEMTYDFEKLKAITK 464

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V +NLNKIID N YP+  AR SN +HRPIG+G+QGLAD F+ +R+P++  E+ +LNKQI
Sbjct: 465 VVVRNLNKIIDRNHYPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYESEEAAVLNKQI 524

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIYYGALEASCE+A RDG Y T+ GSP S+G+LQYDMW  TP+ LWDW ALK+ I  H
Sbjct: 525 AETIYYGALEASCELAQRDGSYSTFAGSPASRGVLQYDMWNATPSALWDWQALKDDIRAH 584

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+GEFQVVN +L+ DL++L ++
Sbjct: 585 GLRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIDDLIKLNVY 644

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +++ +  + GSIQ+IEGIP  +K+LYKT WE+  K +++MAADR AFIDQSQS N++
Sbjct: 645 TPEIRNAIFAHKGSIQNIEGIPDSVKNLYKTAWEMKAKRMIEMAADRNAFIDQSQSFNLF 704

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545
           +A+  YA M+S+H + W+ GLKTGMYYLRTKPAA+
Sbjct: 705 VAQPTYAVMTSIHNYSWRCGLKTGMYYLRTKPAAH 739



 Score =  252 bits (644), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 178/261 (68%), Gaps = 14/261 (5%)

Query: 703 YKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRL------NSAI 756
           Y  A  R+SN+++  +   +  + +     R P  S++   +  + A+ +       S  
Sbjct: 479 YPIASARRSNEKHRPIGVGIQGLADAFVLLRMPYESEEAAVLNKQIAETIYYGALEASCE 538

Query: 757 IYDRDFNYNFFG--------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTA 808
           +  RD +Y+ F          +YDMW  TP+ LWDW ALK+ I  HG+RNSLL+A MPTA
Sbjct: 539 LAQRDGSYSTFAGSPASRGVLQYDMWNATPSALWDWQALKDDIRAHGLRNSLLVAYMPTA 598

Query: 809 STAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGS 868
           +TAQILGNNESFEP+TSN+Y RRVL+GEFQVVN +L+ DL++L ++   +++ +  + GS
Sbjct: 599 TTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIDDLIKLNVYTPEIRNAIFAHKGS 658

Query: 869 IQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHF 928
           IQ+IEGIP  +K+LYKT WE+  K +++MAADR AFIDQSQS N+++A+  YA M+S+H 
Sbjct: 659 IQNIEGIPDSVKNLYKTAWEMKAKRMIEMAADRNAFIDQSQSFNLFVAQPTYAVMTSIHN 718

Query: 929 HGWKLGLKTGMYYLRTKPAAN 949
           + W+ GLKTGMYYLRTKPAA+
Sbjct: 719 YSWRCGLKTGMYYLRTKPAAH 739



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 77/103 (74%), Gaps = 3/103 (2%)

Query: 585 RRDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
           RR N++     +G+QGLAD F+ +R+P++  E+ +LNKQI ETIYYGALEASCE+A RDG
Sbjct: 485 RRSNEKHRPIGVGIQGLADAFVLLRMPYESEEAAVLNKQIAETIYYGALEASCELAQRDG 544

Query: 642 PYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            Y T+ GSP S+G+LQYDMW  TP+ LWDW ALK     +GL+
Sbjct: 545 SYSTFAGSPASRGVLQYDMWNATPSALWDWQALKDDIRAHGLR 587



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI+  L LK+N G E+ +ARDL Y LW+PD FMRRV +D  WSLMC
Sbjct: 285 RKGALAVYIEPWHADIYSVLNLKRNMGAEDCKARDLMYALWVPDLFMRRVNADDMWSLMC 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+ LY++YE+EG
Sbjct: 345 PHQCPGLADCYGDEFERLYERYESEG 370



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 30/32 (93%)

Query: 689 ILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           I+++Q+ETG PYML+KDACNRKSNQQNL VI+
Sbjct: 385 IVETQVETGGPYMLFKDACNRKSNQQNLGVIK 416


>gi|347600629|gb|AEP15116.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 88]
          Length = 746

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/444 (63%), Positives = 357/444 (80%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE+EGK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D +++   L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVK--DGSFDHQHLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  ++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+S+G  Q+DMW VTP+  W+W  L+  + KH
Sbjct: 529 FETMYFAAMTASCDLAKTKGKYSTYEGSPLSKGKFQFDMWNVTPSVRWNWDTLRSNVKKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSL+ APMPTASTAQILGNNE FEP+TSN+YSRRVLSGEF VVN +L++DL + GLW
Sbjct: 589 GTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVVNKYLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DMAADRGAFI QSQS N++
Sbjct: 649 GDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  246 bits (628), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 138/170 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW VTP+  W+W  L+  + KHG RNSL+ APMPTASTAQILGNNE FEP+TSN+Y
Sbjct: 563 FQFDMWNVTPSVRWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN +L++DL + GLW D+MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DMAADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE+EG
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEG 376



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  ++R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKMAFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G  Q+DMW VTP+  W+W  L+
Sbjct: 560 KGKFQFDMWNVTPSVRWNWDTLR 582



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V+E LYN VN +TG  +P+I+D   E I  NA  L+  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMESLYNYVNTKTGQWSPLIADDIIECIRSNAVVLDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|347481982|gb|AEO97968.1| ribonucleoside-diphosphate reductase [Emiliania huxleyi virus 84]
          Length = 746

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 282/444 (63%), Positives = 358/444 (80%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE+EGK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D +++  +L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPAFVK--DGSFDHQQLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  ++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKMAFDSPDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+S+G  Q+D+W VTP+  W+W  L+  + KH
Sbjct: 529 FETMYFAAMTASCDLAKTKGKYSTYEGSPLSKGKFQFDLWNVTPSVRWNWDTLRSNVKKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSL+ APMPTASTAQILGNNE FEP+TSN+YSRRVLSGEF VVN +L++DL + GLW
Sbjct: 589 GTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVVNKYLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DMAADRGAFI QSQS N++
Sbjct: 649 GDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  245 bits (625), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/170 (63%), Positives = 138/170 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W VTP+  W+W  L+  + KHG RNSL+ APMPTASTAQILGNNE FEP+TSN+Y
Sbjct: 563 FQFDLWNVTPSVRWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN +L++DL + GLW D+MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DMAADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE+EG
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEG 376



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  ++R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKMAFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G  Q+D+W VTP+  W+W  L+
Sbjct: 560 KGKFQFDLWNVTPSVRWNWDTLR 582



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V+E LYN VN +TG  +P+I+D   E I  NA  L+  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMESLYNYVNTKTGQWSPLIADDIIECIRSNAVVLDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|38683667|gb|AAR26844.1| FirrV-1-A20 [Feldmannia irregularis virus a]
          Length = 766

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 293/466 (62%), Positives = 366/466 (78%), Gaps = 4/466 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ AIYLEPWH DI  FL+LKKN G E  RARDLFY LW+PD FMRRVE + +WSLMC
Sbjct: 292 RKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFYALWVPDLFMRRVEKNQKWSLMC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIR-QVPARKLWFAILDSQIETGTPYMLYKDAC 209
           PN C GL++ WG++FD LY+KYEA    +R  + ARKLW  ILD Q+ETGTPY+LYKD+ 
Sbjct: 352 PNECPGLANVWGKEFDALYEKYEASPNKVRATLDARKLWNHILDVQVETGTPYILYKDSV 411

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN---PADKTYNFTKLK 266
           N KSNQQ+LG IK SNLCTEIVEYTS DE+AVCNLASI L+  I     A+   ++T L 
Sbjct: 412 NAKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLASINLSSVIRHPYTAEAYVDYTALV 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +A  + +NLN++ID N+YPV EAR SNM+HRP+GIGVQG AD  I +R P+D  E+  +
Sbjct: 472 GLAGSLVRNLNRVIDKNYYPVPEARASNMKHRPVGIGVQGFADALIMLRKPYDSPEAAAI 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N  +FE+IYYGAL+AS + A   G ++++ GSP+SQG  Q+D+WGV PTD +DW  L+  
Sbjct: 532 NVNLFESIYYGALKASLQEAQLYGRHESFPGSPLSQGRFQFDLWGVQPTDTYDWNTLRAS 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I +HGVRNSLL APMPTASTAQILGNNESFEP+T+N+Y+RRVL+GEF VVN HLL+DL  
Sbjct: 592 IVEHGVRNSLLCAPMPTASTAQILGNNESFEPFTTNVYNRRVLAGEFPVVNKHLLKDLTS 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           L LWDD MK+QL+++NGS+Q+I  IP+ +KDLYKTVWEIPQ+ +LD AADRG ++ QSQS
Sbjct: 652 LDLWDDEMKNQLLLHNGSVQNIARIPRWVKDLYKTVWEIPQRVILDHAADRGPYVCQSQS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +NI+MAE   AK++SM FHGWK GLKTGMYYLRT+P A++IQF +D
Sbjct: 712 MNIHMAEPTRAKLTSMLFHGWKRGLKTGMYYLRTRPRADSIQFGVD 757



 Score =  288 bits (737), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/188 (68%), Positives = 160/188 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WGV PTD +DW  L+  I +HGVRNSLL APMPTASTAQILGNNESFEP+T+N+Y
Sbjct: 570 FQFDLWGVQPTDTYDWNTLRASIVEHGVRNSLLCAPMPTASTAQILGNNESFEPFTTNVY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF VVN HLL+DL  L LWDD MK+QL+++NGS+Q+I  IP+ +KDLYKTVWE
Sbjct: 630 NRRVLAGEFPVVNKHLLKDLTSLDLWDDEMKNQLLLHNGSVQNIARIPRWVKDLYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LD AADRG ++ QSQS+NI+MAE   AK++SM FHGWK GLKTGMYYLRT+P A
Sbjct: 690 IPQRVILDHAADRGPYVCQSQSMNIHMAEPTRAKLTSMLFHGWKRGLKTGMYYLRTRPRA 749

Query: 949 NAIQFTID 956
           ++IQF +D
Sbjct: 750 DSIQFGVD 757



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 67/84 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ AIYLEPWH DI  FL+LKKN G E  RARDLFY LW+PD FMRRVE + +WSLMC
Sbjct: 292 RKGSIAIYLEPWHADIESFLDLKKNQGNELERARDLFYALWVPDLFMRRVEKNQKWSLMC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN C GL++ WG++FD LY+KYEA
Sbjct: 352 PNECPGLANVWGKEFDALYEKYEA 375



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD  I +R P+D  E+  +N  +FE+IYYGAL+AS + A   G ++++ GSP+S
Sbjct: 507 IGVQGFADALIMLRKPYDSPEAAAINVNLFESIYYGALKASLQEAQLYGRHESFPGSPLS 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG  Q+D+WGV PTD +DW  L+   + +G++
Sbjct: 567 QGRFQFDLWGVQPTDTYDWNTLRASIVEHGVR 598



 Score = 59.3 bits (142), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KV A +   KLW  ILD Q+ETGTPY+LYKD+ N KSNQQ+L VI+
Sbjct: 379 KVRATLDARKLWNHILDVQVETGTPYILYKDSVNAKSNQQHLGVIK 424


>gi|283481642|emb|CAZ69758.1| putative ribonucleoside-diphosphate reductase protein [Emiliania
           huxleyi virus 99B1]
          Length = 746

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 283/444 (63%), Positives = 356/444 (80%), Gaps = 2/444 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD WG+ +  LY+KYE+EGK  + +PA+KLWFAI+DSQIETGTPYMLYKD+CN
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQ+LGTI+ SNLCTEI+EYT+ DE AVCNLASIAL  ++   D +++   L DV  
Sbjct: 411 RKSNQQHLGTIQQSNLCTEIIEYTAPDETAVCNLASIALPSFVK--DGSFDHQHLYDVTY 468

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
             T NL+K+ID N+YP+ EA  SNMRHRPIG+GVQGLAD+F+ +++ FD  ++R+LNK+I
Sbjct: 469 HATCNLDKVIDKNYYPIPEAERSNMRHRPIGLGVQGLADVFMMLKISFDSPDARVLNKEI 528

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ A+ ASC++A   G Y TYEGSP+S G  Q+DMW VTP+  W+W  L+  + KH
Sbjct: 529 FETMYFAAMTASCDLAKTKGKYSTYEGSPLSNGKFQFDMWNVTPSVRWNWDTLRSNVKKH 588

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G RNSL+ APMPTASTAQILGNNE FEP+TSN+YSRRVLSGEF VVN +L++DL + GLW
Sbjct: 589 GTRNSLVTAPMPTASTAQILGNNECFEPFTSNLYSRRVLSGEFPVVNKYLVKDLSDRGLW 648

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D+MK+ +I  NGS+Q+I G P+ LK +YKTVWEI  +T++DMAADRGAFI QSQS N++
Sbjct: 649 GDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWEISMRTLIDMAADRGAFICQSQSFNVF 708

Query: 511 MAEINYAKMSSMHFHGWKLGLKTG 534
           M +   AK++SMHF+GWK GLKTG
Sbjct: 709 MTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 109/170 (64%), Positives = 138/170 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW VTP+  W+W  L+  + KHG RNSL+ APMPTASTAQILGNNE FEP+TSN+Y
Sbjct: 563 FQFDMWNVTPSVRWNWDTLRSNVKKHGTRNSLVTAPMPTASTAQILGNNECFEPFTSNLY 622

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF VVN +L++DL + GLW D+MK+ +I  NGS+Q+I G P+ LK +YKTVWE
Sbjct: 623 SRRVLSGEFPVVNKYLVKDLSDRGLWGDSMKNYIIAANGSVQNIPGFPEDLKPIYKTVWE 682

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           I  +T++DMAADRGAFI QSQS N++M +   AK++SMHF+GWK GLKTG
Sbjct: 683 ISMRTLIDMAADRGAFICQSQSFNVFMTQPTSAKLTSMHFYGWKSGLKTG 732



 Score =  137 bits (345), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEP H DIF+FLEL+KNTGKEE RARDLFY LW+ D FM+RVE+   WSL C
Sbjct: 291 RKGAFAMYLEPHHADIFEFLELRKNTGKEELRARDLFYALWVSDHFMKRVEAGKNWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD WG+ +  LY+KYE+EG
Sbjct: 351 PHECPGLSDVWGDDYVALYEKYESEG 376



 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 64/83 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +++ FD  ++R+LNK+IFET+Y+ A+ ASC++A   G Y TYEGSP+S
Sbjct: 500 LGVQGLADVFMMLKISFDSPDARVLNKEIFETMYFAAMTASCDLAKTKGKYSTYEGSPLS 559

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
            G  Q+DMW VTP+  W+W  L+
Sbjct: 560 NGKFQFDMWNVTPSVRWNWDTLR 582



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 10/66 (15%)

Query: 666 TDLW--DWAAL--------KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
           +D+W  D+ AL        K    +   KLWFAI+DSQIETGTPYMLYKD+CNRKSNQQ+
Sbjct: 358 SDVWGDDYVALYEKYESEGKARKTIPAQKLWFAIMDSQIETGTPYMLYKDSCNRKSNQQH 417

Query: 716 LEVIEE 721
           L  I++
Sbjct: 418 LGTIQQ 423



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
           L+K   N+ S+     V++ LYN VN +TG  +P+I+D   E I  NAD  +  I Y++D
Sbjct: 84  LHKMTSNKFSS-----VMDSLYNYVNTKTGQWSPLIADDIIECIRSNADVFDDVINYEKD 138

Query: 762 FNYNFFGFK 770
             Y+ FG+K
Sbjct: 139 LEYDIFGYK 147


>gi|344229874|gb|EGV61759.1| ribonucleoside-diphosphate reductase large chain [Candida tenuis
           ATCC 10573]
          Length = 816

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 288/468 (61%), Positives = 371/468 (79%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA++LEPWH D+F+ L+L+KN GKEE RARDLFYGLWIPD FM++V+ D  W L  
Sbjct: 273 RPGAFAVFLEPWHTDVFEVLDLRKNYGKEELRARDLFYGLWIPDLFMQKVKDDEDWCLFS 332

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F  LY+KYE  G  +R V A+KLW +IL+SQ ETG PYM+YKDACN
Sbjct: 333 PDVSPGLSDCYGDEFKALYEKYERAGDAVRVVKAQKLWQSILESQTETGGPYMMYKDACN 392

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNFTKLKD 267
            KSNQ+NLGTIK SNLC EIVEY+SK+E AVCNL S+AL  ++N  DK   ++NF KL +
Sbjct: 393 TKSNQKNLGTIKSSNLCCEIVEYSSKEETAVCNLGSLALPSFVN-EDKDSISFNFMKLHE 451

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K++ KNL+KI+D+  YP E A  SN +HRPI IGVQGLAD+F  +R+PF+  E++ LN
Sbjct: 452 VTKVLGKNLDKIVDITRYPDEGAETSNRKHRPIAIGVQGLADVFALLRIPFESKEAKKLN 511

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKEK 386
            QIFETIY+ A+E S E+A + G Y+T++GSP SQG+LQ+D W   P+DL+D W  LKE 
Sbjct: 512 IQIFETIYHAAVEGSIELAKKHGAYETFKGSPASQGMLQFDFWNHKPSDLFDDWNDLKEN 571

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +  +G+RNSLL+ PMPTAST+QILG NE FEP+TSNIYSRRV SGEFQVVN +L+ DL+E
Sbjct: 572 MMVYGLRNSLLVGPMPTASTSQILGFNECFEPFTSNIYSRRVTSGEFQVVNKYLINDLIE 631

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW+ ++KD++++  GS+Q I  IP ++K+LYKTVWEI QK +L+MAADRG F+DQSQS
Sbjct: 632 LGLWNQDLKDKILLAEGSVQGIPEIPVEIKELYKTVWEISQKVILEMAADRGRFVDQSQS 691

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +NIYM    Y+K++S HF+ WKLGLKTGMYYLRT+ A+ AIQFTI++T
Sbjct: 692 MNIYMKNPTYSKLTSCHFYSWKLGLKTGMYYLRTQAASRAIQFTIERT 739



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 120/191 (62%), Positives = 156/191 (81%), Gaps = 1/191 (0%)

Query: 769 FKYDMWGVTPTDLWD-WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W   P+DL+D W  LKE +  +G+RNSLL+ PMPTAST+QILG NE FEP+TSNI
Sbjct: 549 LQFDFWNHKPSDLFDDWNDLKENMMVYGLRNSLLVGPMPTASTSQILGFNECFEPFTSNI 608

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           YSRRV SGEFQVVN +L+ DL+ELGLW+ ++KD++++  GS+Q I  IP ++K+LYKTVW
Sbjct: 609 YSRRVTSGEFQVVNKYLINDLIELGLWNQDLKDKILLAEGSVQGIPEIPVEIKELYKTVW 668

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +L+MAADRG F+DQSQS+NIYM    Y+K++S HF+ WKLGLKTGMYYLRT+ A
Sbjct: 669 EISQKVILEMAADRGRFVDQSQSMNIYMKNPTYSKLTSCHFYSWKLGLKTGMYYLRTQAA 728

Query: 948 ANAIQFTIDKT 958
           + AIQFTI++T
Sbjct: 729 SRAIQFTIERT 739



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA++LEPWH D+F+ L+L+KN GKEE RARDLFYGLWIPD FM++V+ D  W L  
Sbjct: 273 RPGAFAVFLEPWHTDVFEVLDLRKNYGKEELRARDLFYGLWIPDLFMQKVKDDEDWCLFS 332

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD +G++F  LY+KYE  G
Sbjct: 333 PDVSPGLSDCYGDEFKALYEKYERAG 358



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
            A    R ++   IGVQGLAD+F  +R+PF+  E++ LN QIFETIY+ A+E S E+A +
Sbjct: 473 GAETSNRKHRPIAIGVQGLADVFALLRIPFESKEAKKLNIQIFETIYHAAVEGSIELAKK 532

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLK 684
            G Y+T++GSP SQG+LQ+D W   P+DL+ DW  LK   +VYGL+
Sbjct: 533 HGAYETFKGSPASQGMLQFDFWNHKPSDLFDDWNDLKENMMVYGLR 578



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   KLW +IL+SQ ETG PYM+YKDACN KSNQ+NL  I+
Sbjct: 363 VVKAQKLWQSILESQTETGGPYMMYKDACNTKSNQKNLGTIK 404



 Score = 41.6 bits (96), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 719 IEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +LY   + +T   TP +S + Y++ MKN D L++A+  +RD   ++FG K
Sbjct: 78  MSKLYYNYHPKTNKHTPSVSKQVYDVAMKNRDVLDTAVESERDLTISYFGIK 129


>gi|118197505|ref|YP_874319.1| ribonucleotide reductase large subunit [Ectropis obliqua NPV]
 gi|37039662|gb|AAQ88175.1| ribonucleotide reductase large subunit [Ectropis obliqua NPV]
          Length = 760

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 281/473 (59%), Positives = 374/473 (79%), Gaps = 1/473 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIY+EPWH DI+DFLELK+N G E+ +ARDL Y LW+PD FM+RVE+D  WSLMC
Sbjct: 288 RKGAMAIYVEPWHADIYDFLELKRNMGAEDRKARDLLYALWVPDLFMKRVEADGMWSLMC 347

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L    G +F+ LY  YE  GKF+RQ+ AR L+  I+++Q+ETGTPYM+YKDACN
Sbjct: 348 PRESPLLDTVHGSEFEQLYVAYEKCGKFVRQIKARDLFRTIVETQVETGTPYMMYKDACN 407

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTIK SNLC EIVEY+ K+E AVCNLASI +N +++     YNF  LK V K
Sbjct: 408 MKSNQKHLGTIKNSNLCAEIVEYSDKNESAVCNLASICVNQFVDIDVGEYNFEMLKYVTK 467

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV KNLNKIID+N+YP+  A+ SN +HRPIG+G+QGLAD F  +R+P++ +++++LN +I
Sbjct: 468 IVVKNLNKIIDINYYPLLSAQKSNRKHRPIGVGIQGLADTFAMLRMPYESDQAKVLNTKI 527

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ETIY+GALEASCE+A   G + +Y  SP S GILQYD+W  TPT +WDW  LK+ I +H
Sbjct: 528 AETIYFGALEASCELAKAYGVHDSYFSSPASLGILQYDLWNHTPTSMWDWTQLKKDIKQH 587

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSL +A MPTA+TAQILGNNESFEP+T+NIY RRVL+G+FQV+N +L  DL++L L+
Sbjct: 588 GLRNSLCVAYMPTATTAQILGNNESFEPFTNNIYVRRVLAGDFQVINKYLTDDLIKLNLY 647

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ M++++I NNGS+Q+IE IP+ +++LYKTVWE+  K ++ MAADRG FIDQSQS NI+
Sbjct: 648 NEQMRNKIIANNGSVQNIEEIPKHVRELYKTVWEMKVKNLIGMAADRGPFIDQSQSFNIF 707

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-ANAMAS 562
           +++  YA ++++H H WK GLKTGMYYLRTKPAA+AI+FT+DK+++  NA +S
Sbjct: 708 LSQPTYALLTTIHMHTWKSGLKTGMYYLRTKPAADAIKFTVDKSQIVCNACSS 760



 Score =  270 bits (689), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 165/199 (82%), Gaps = 1/199 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W  TPT +WDW  LK+ I +HG+RNSL +A MPTA+TAQILGNNESFEP+T+NIY
Sbjct: 562 LQYDLWNHTPTSMWDWTQLKKDIKQHGLRNSLCVAYMPTATTAQILGNNESFEPFTNNIY 621

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+G+FQV+N +L  DL++L L+++ M++++I NNGS+Q+IE IP+ +++LYKTVWE
Sbjct: 622 VRRVLAGDFQVINKYLTDDLIKLNLYNEQMRNKIIANNGSVQNIEEIPKHVRELYKTVWE 681

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K ++ MAADRG FIDQSQS NI++++  YA ++++H H WK GLKTGMYYLRTKPAA
Sbjct: 682 MKVKNLIGMAADRGPFIDQSQSFNIFLSQPTYALLTTIHMHTWKSGLKTGMYYLRTKPAA 741

Query: 949 NAIQFTIDKTKM-ANAMAS 966
           +AI+FT+DK+++  NA +S
Sbjct: 742 DAIKFTVDKSQIVCNACSS 760



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 60/86 (69%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIY+EPWH DI+DFLELK+N G E+ +ARDL Y LW+PD FM+RVE+D  WSLMC
Sbjct: 288 RKGAMAIYVEPWHADIYDFLELKRNMGAEDRKARDLLYALWVPDLFMKRVEADGMWSLMC 347

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L    G +F+ LY  YE  G
Sbjct: 348 PRESPLLDTVHGSEFEQLYVAYEKCG 373



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 73/106 (68%)

Query: 579 MAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAA 638
           ++A    R ++   +G+QGLAD F  +R+P++ +++++LN +I ETIY+GALEASCE+A 
Sbjct: 485 LSAQKSNRKHRPIGVGIQGLADTFAMLRMPYESDQAKVLNTKIAETIYFGALEASCELAK 544

Query: 639 RDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
             G + +Y  SP S GILQYD+W  TPT +WDW  LK     +GL+
Sbjct: 545 AYGVHDSYFSSPASLGILQYDLWNHTPTSMWDWTQLKKDIKQHGLR 590



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 13/86 (15%)

Query: 636 IAARDGPY-QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQI 694
           +  R+ P   T  GS   Q  + Y+  G            K +  +    L+  I+++Q+
Sbjct: 346 MCPRESPLLDTVHGSEFEQLYVAYEKCG------------KFVRQIKARDLFRTIVETQV 393

Query: 695 ETGTPYMLYKDACNRKSNQQNLEVIE 720
           ETGTPYM+YKDACN KSNQ++L  I+
Sbjct: 394 ETGTPYMMYKDACNMKSNQKHLGTIK 419


>gi|190347674|gb|EDK39996.2| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 286/462 (61%), Positives = 365/462 (79%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+ L+LKKN GKEE RARDLFY LWIPD FM RV +D QWS   
Sbjct: 296 RPGAFAIYLEPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +GE+F  LY+ YEA+G  ++ V A+KLW AILDSQIETG PYMLYKDACN
Sbjct: 356 PDQAPGLENCYGEEFKRLYESYEAKGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC E+V+Y+S DEVAVCNL S+AL M++   +  ++   L  V K
Sbjct: 416 EKSNQKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVK--NDNFDSQLLHKVTK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++  NLNK+IDV  YP+E AR SN +HRPI +GVQGLADLF+++ LPFD   +R LN Q+
Sbjct: 474 VLVNNLNKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQV 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKEKIAK 389
           FETIY+ A+EAS E+A +DGPY+T+ GSP S+G+LQ+D+W   P+DL+ DW  LK+K+ K
Sbjct: 534 FETIYHAAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSDLYTDWDELKQKVVK 593

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVVN +L++ L EL L
Sbjct: 594 SGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNL 653

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+  MKD+++V  GS+ +I+ IPQ ++D++KTVW+I Q+T++DMA DR  FIDQSQSLNI
Sbjct: 654 WNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDISQRTIIDMAVDRAKFIDQSQSLNI 713

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +M     +K++S HF+ WK GLKTG+YYLRT+ A+ AIQFT+
Sbjct: 714 HMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTV 755



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 152/188 (80%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P+DL+ DW  LK+K+ K G+RNSLL+APMPTAST+QILG NE FEPYTSNI
Sbjct: 568 LQFDLWNHKPSDLYTDWDELKQKVVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNI 627

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEFQVVN +L++ L EL LW+  MKD+++V  GS+ +I+ IPQ ++D++KTVW
Sbjct: 628 YTRRVLAGEFQVVNKYLVKKLTELNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVW 687

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           +I Q+T++DMA DR  FIDQSQSLNI+M     +K++S HF+ WK GLKTG+YYLRT+ A
Sbjct: 688 DISQRTIIDMAVDRAKFIDQSQSLNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSA 747

Query: 948 ANAIQFTI 955
           + AIQFT+
Sbjct: 748 SRAIQFTV 755



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+ L+LKKN GKEE RARDLFY LWIPD FM RV +D QWS   
Sbjct: 296 RPGAFAIYLEPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GL + +GE+F  LY+ YEA+GL
Sbjct: 356 PDQAPGLENCYGEEFKRLYESYEAKGL 382



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A I  + ++   +GVQGLADLF+++ LPFD   +R LN Q+FETIY+ A+EAS E+A +
Sbjct: 492 SARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELAIK 551

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLK 684
           DGPY+T+ GSP S+G+LQ+D+W   P+DL+ DW  LK   +  G++
Sbjct: 552 DGPYETFAGSPASKGLLQFDLWNHKPSDLYTDWDELKQKVVKSGMR 597



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 35/44 (79%)

Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           + +V   KLW AILDSQIETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 384 MKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIK 427


>gi|378706242|gb|AFC35043.1| hypothetical protein OtV6_135c [Ostreococcus tauri virus RT-2011]
          Length = 747

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 291/462 (62%), Positives = 356/462 (77%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+Y+EPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYIEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD+ GE+F+ LYKKYE EG+    VPA ++W AIL SQ ETGTPYMLYKDACN
Sbjct: 338 PDKAPGLSDAVGEEFETLYKKYEDEGRANATVPATEVWKAILKSQTETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +KSNQ+NLGTIK SNLCTEI+EYT KDE AVCNLASIAL  Y++   KT+++ KL +V K
Sbjct: 398 QKSNQKNLGTIKSSNLCTEILEYTDKDETAVCNLASIALPKYVDREKKTFDYEKLHEVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            VTKNLN++ID NFYPVE AR SNMRHRPIG+GVQGLAD+FI  RL FD +E++ +N +I
Sbjct: 458 TVTKNLNRVIDRNFYPVETARKSNMRHRPIGLGVQGLADVFILCRLAFDSDEAKEINARI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+ ALEAS E+A  DG Y+T+EGSP SQGI Q+DMW       +DW A++E++   
Sbjct: 518 FETMYHAALEASSELAEVDGSYETFEGSPASQGIFQFDMWEGETKLHYDWDAMRERVKTK 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY RR L+GEF +VN HL+ DL  +GLW
Sbjct: 578 GLRNSLLMAPMPTASTAQILGNNECFEPYTTNIYLRRTLAGEFVIVNKHLVDDLKNVGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              MKD ++   GSIQ+I  IP  +K LY+TVWEI  K V+DMAA RG FIDQSQS+N++
Sbjct: 638 SKEMKDLMVKAGGSIQNIVDIPDDIKKLYRTVWEIKMKDVIDMAAQRGRFIDQSQSMNLF 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           M     +K+SSMH + WK GLKTGMYYLR+K  A  IQF+++
Sbjct: 698 MESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKARPIQFSLE 739



 Score =  239 bits (611), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/188 (58%), Positives = 140/188 (74%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMW       +DW A++E++   G+RNSLL+APMPTASTAQILGNNE FEPYT+NIY
Sbjct: 552 FQFDMWEGETKLHYDWDAMRERVKTKGLRNSLLMAPMPTASTAQILGNNECFEPYTTNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RR L+GEF +VN HL+ DL  +GLW   MKD ++   GSIQ+I  IP  +K LY+TVWE
Sbjct: 612 LRRTLAGEFVIVNKHLVDDLKNVGLWSKEMKDLMVKAGGSIQNIVDIPDDIKKLYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+DMAA RG FIDQSQS+N++M     +K+SSMH + WK GLKTGMYYLR+K  A
Sbjct: 672 IKMKDVIDMAAQRGRFIDQSQSMNLFMESPTMSKLSSMHMYAWKQGLKTGMYYLRSKAKA 731

Query: 949 NAIQFTID 956
             IQF+++
Sbjct: 732 RPIQFSLE 739



 Score =  125 bits (314), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+Y+EPWH DI +FLEL+ N G EE R RDLF  LWIPD FM+RVE   QWSL C
Sbjct: 278 RKGSIAVYIEPWHADIMEFLELRLNQGDEEARCRDLFSALWIPDLFMKRVEEGGQWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+   GLSD+ GE+F+ LYKKYE EG
Sbjct: 338 PDKAPGLSDAVGEEFETLYKKYEDEG 363



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+FI  RL FD +E++ +N +IFET+Y+ ALEAS E+A  DG Y+T+EGSP S
Sbjct: 489 LGVQGLADVFILCRLAFDSDEAKEINARIFETMYHAALEASSELAEVDGSYETFEGSPAS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGI Q+DMW       +DW A++      GL+
Sbjct: 549 QGIFQFDMWEGETKLHYDWDAMRERVKTKGLR 580



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 34/43 (79%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A V   ++W AIL SQ ETGTPYMLYKDACN+KSNQ+NL  I+
Sbjct: 367 ATVPATEVWKAILKSQTETGTPYMLYKDACNQKSNQKNLGTIK 409


>gi|449329866|gb|AGE96134.1| ribonucleoside diphosphate reductase [Encephalitozoon cuniculi]
          Length = 768

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/474 (60%), Positives = 372/474 (78%), Gaps = 7/474 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
           P+   GLSD WGE+F+ LY KYE   K I +  VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 403

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           CNR SNQQ+LGTIK SNLC EIVEY+S +E +VCNLASI L M++   D  ++F   + V
Sbjct: 404 CNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVK--DGGFDFEAFRRV 461

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            KI+T NLN++ID N+YPVEEAR SNMR+RPIGIGVQGLADLF  +RL F+ + +R LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            IFE +YY A+EASCE+A ++GP+ +YEGSP+S+GI  +++ G   +  WDW  L+E+I 
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY+RR  +GEFQ+VN HL+ DLV LG
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK+ +I N GSIQ+I  IP +++++YKT WEI  K+V+D+AADR  F+DQSQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           I++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  +AI+FT+DK      ++S
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755



 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 153/198 (77%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++ G   +  WDW  L+E+I +HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY
Sbjct: 558 FHFELAGRKASGNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIY 617

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN HL+ DLV LGLW   MK+ +I N GSIQ+I  IP +++++YKT WE
Sbjct: 618 TRRTHAGEFQIVNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWE 677

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+V+D+AADR  F+DQSQSLNI++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  
Sbjct: 678 IKMKSVIDLAADRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 737

Query: 949 NAIQFTIDKTKMANAMAS 966
           +AI+FT+DK      ++S
Sbjct: 738 SAIKFTVDKKLAEKTLSS 755



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GLSD WGE+F+ LY KYE
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE 369



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLADLF  +RL F+ + +R LN+ IFE +YY A+EASCE+A ++GP+ +YE
Sbjct: 490 NRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYE 549

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP+S+GI  +++ G   +  WDW  L+     +G++
Sbjct: 550 GSPISKGIFHFELAGRKASGNWDWEGLRERIRRHGVR 586



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           SQ +   D+WG     L+  +       +V   KLW AI+++QIETGTPYM YKDACNR 
Sbjct: 348 SQAVGLSDVWGEEFNALYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 711 SNQQNLEVIE 720
           SNQQ+L  I+
Sbjct: 408 SNQQHLGTIK 417


>gi|145497945|ref|XP_001434961.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124402089|emb|CAK67564.1| unnamed protein product [Paramecium tetraurelia]
          Length = 840

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/471 (61%), Positives = 367/471 (77%), Gaps = 11/471 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  FL+L+KN G EE RARDLF GLWIPD FM+RV+ D+ W+LMC
Sbjct: 311 RKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMC 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GL D +G++F+ LY  YE++      + AR+LW  I+D+QI TG PYMLYKDACN
Sbjct: 371 PNECPGLQDCYGQEFNKLYTDYESKNMGRVTMKARQLWQEIIDAQISTGLPYMLYKDACN 430

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLCTEI++YTS DE+AVCNLASI L   I   DKT++F KL ++ K
Sbjct: 431 SKSNQKNLGTIKSSNLCTEIIQYTSPDEIAVCNLASINLQKLIK-EDKTFDFDKLLEITK 489

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+T NLN +ID+NFYPV++A  SN R+RPIGIGVQG AD   +M++PFD  ++  LN +I
Sbjct: 490 IITINLNIVIDLNFYPVKQAEYSNKRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKI 549

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYYGA + S E+A + GPY+T+ GSP SQGILQ+DMWGV+P  L+DW  LK+ IAKH
Sbjct: 550 FETIYYGACQTSLELAQKLGPYETFTGSPASQGILQFDMWGVSP-KLYDWNTLKQNIAKH 608

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIAPMPTAST+QIL NNESFEPYT+NIY+RRVL+GEF  +N HL+ DL+EL LW
Sbjct: 609 GMRNSLLIAPMPTASTSQILQNNESFEPYTTNIYTRRVLAGEFVCINPHLVDDLIELNLW 668

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K++LI+NNGS+Q+IE IP  +K LYKTVWEI QK +L++A  R  FIDQSQSLNI+
Sbjct: 669 TPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVWEISQKAILNLATSRAPFIDQSQSLNIH 728

Query: 511 MAEINYAKMSSMHFHGWKLGLKT---------GMYYLRTKPAANAIQFTID 552
           MAE   +K++SMHF+  + G+K          GMYYLRT+PAA+ I+FT+D
Sbjct: 729 MAEPTMSKVTSMHFYAGRKGVKNRYILYITIKGMYYLRTRPAADPIKFTVD 779



 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 121/197 (61%), Positives = 155/197 (78%), Gaps = 10/197 (5%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMWGV+P  L+DW  LK+ IAKHG+RNSLLIAPMPTAST+QIL NNESFEPYT+NIY
Sbjct: 584 LQFDMWGVSP-KLYDWNTLKQNIAKHGMRNSLLIAPMPTASTSQILQNNESFEPYTTNIY 642

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF  +N HL+ DL+EL LW   +K++LI+NNGS+Q+IE IP  +K LYKTVWE
Sbjct: 643 TRRVLAGEFVCINPHLVDDLIELNLWTPQIKNKLIMNNGSVQNIEEIPNNIKSLYKTVWE 702

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT---------GM 939
           I QK +L++A  R  FIDQSQSLNI+MAE   +K++SMHF+  + G+K          GM
Sbjct: 703 ISQKAILNLATSRAPFIDQSQSLNIHMAEPTMSKVTSMHFYAGRKGVKNRYILYITIKGM 762

Query: 940 YYLRTKPAANAIQFTID 956
           YYLRT+PAA+ I+FT+D
Sbjct: 763 YYLRTRPAADPIKFTVD 779



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  FL+L+KN G EE RARDLF GLWIPD FM+RV+ D+ W+LMC
Sbjct: 311 RKGSFAIYLEPWHSDIISFLQLRKNHGIEEQRARDLFLGLWIPDLFMQRVKDDSDWTLMC 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN C GL D +G++F+ LY  YE++ +
Sbjct: 371 PNECPGLQDCYGQEFNKLYTDYESKNM 397



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           + N+   IGVQG AD   +M++PFD  ++  LN +IFETIYYGA + S E+A + GPY+T
Sbjct: 514 KRNRPIGIGVQGFADALQRMKIPFDSEDALELNAKIFETIYYGACQTSLELAQKLGPYET 573

Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           + GSP SQGILQ+DMWGV+P  L+DW  LK     +G++
Sbjct: 574 FTGSPASQGILQFDMWGVSP-KLYDWNTLKQNIAKHGMR 611



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW  I+D+QI TG PYMLYKDACN KSNQ+NL  I+
Sbjct: 406 QLWQEIIDAQISTGLPYMLYKDACNSKSNQKNLGTIK 442



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++++   EV  +L++  +K  G   P+I+D  Y+IIM+N D + + I YDRD+ Y+FF
Sbjct: 106 HKETSESFSEVATKLHSFTDK-YGRPAPLIADDVYKIIMENKDIIQNEINYDRDYQYDFF 164

Query: 768 GFK 770
           GFK
Sbjct: 165 GFK 167


>gi|224001624|ref|XP_002290484.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
 gi|220973906|gb|EED92236.1| ribonucleoside reductase [Thalassiosira pseudonana CCMP1335]
          Length = 811

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/514 (57%), Positives = 385/514 (74%), Gaps = 37/514 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFD L LKKN GKEE RAR+LFYGLW+PD FM+RVE D  WSLMC
Sbjct: 288 RPGAFAIYLEPWHADIFDVLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMC 347

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLS+  GEKF++LY KYE++G++ RQV AR+LW AIL++QIETGTPY+LYKDA N
Sbjct: 348 PHRCPGLSECHGEKFEELYAKYESDGRYTRQVRARELWAAILEAQIETGTPYLLYKDAAN 407

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------NPADKTY 260
           +KSNQQNLGTI+CSNLCTEI++YT+++EVAVCNLASI L  ++            +   +
Sbjct: 408 KKSNQQNLGTIQCSNLCTEIIQYTNEEEVAVCNLASICLPKFVVSDRGNFGSTEGSGAYF 467

Query: 261 NFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDC 320
           +  +L  VAKIVTKNL+K+IDVN YP+E A+ SN  HRP+GIGV GLAD F+++ LPF  
Sbjct: 468 DHEQLHKVAKIVTKNLDKVIDVNQYPIEGAKKSNRSHRPVGIGVSGLADTFLRLGLPFAS 527

Query: 321 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV----TPTD 376
            E++ LN+ IFETIY+ +LEAS EIA   G Y+T+ GSP S+G LQ+++WGV    TP+ 
Sbjct: 528 EEAKTLNEAIFETIYHASLEASNEIAREKGSYETFAGSPASEGKLQFNLWGVDDVETPSH 587

Query: 377 L-------------------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 417
                               +DW  L++ I + G+RNSLL+APMPTAST+QILG NE FE
Sbjct: 588 RKDQSALAFQKYSTQVNGGGYDWETLRQNIIEGGLRNSLLVAPMPTASTSQILGVNECFE 647

Query: 418 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
           P+ SN+Y RRV +GEF +VN HL++DL +LGLW+ ++++QL+ + GS+  IE +P +LK 
Sbjct: 648 PFASNLYVRRVKAGEFIIVNPHLIQDLTDLGLWNQSVRNQLMRDGGSVAKIECVPDRLKG 707

Query: 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYY 537
           LYKTVWE+  K V+DMAADRG FIDQSQSLN+++A+    K+++MHF+ WK GLKTG+YY
Sbjct: 708 LYKTVWEMKMKDVIDMAADRGKFIDQSQSLNLFIADPTVDKLTAMHFYAWKKGLKTGIYY 767

Query: 538 LRTKPAANAIQFTIDKTKMANAMASKDARSQEEI 571
           LRT+PA NAIQ+T++K    +A+   DA  Q+ I
Sbjct: 768 LRTRPAVNAIQYTVEK----DALPEVDASPQQNI 797



 Score =  240 bits (613), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 109/194 (56%), Positives = 151/194 (77%), Gaps = 4/194 (2%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW  L++ I + G+RNSLL+APMPTAST+QILG NE FEP+ SN+Y RRV +GEF +VN
Sbjct: 608 YDWETLRQNIIEGGLRNSLLVAPMPTASTSQILGVNECFEPFASNLYVRRVKAGEFIIVN 667

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
            HL++DL +LGLW+ ++++QL+ + GS+  IE +P +LK LYKTVWE+  K V+DMAADR
Sbjct: 668 PHLIQDLTDLGLWNQSVRNQLMRDGGSVAKIECVPDRLKGLYKTVWEMKMKDVIDMAADR 727

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
           G FIDQSQSLN+++A+    K+++MHF+ WK GLKTG+YYLRT+PA NAIQ+T++K    
Sbjct: 728 GKFIDQSQSLNLFIADPTVDKLTAMHFYAWKKGLKTGIYYLRTRPAVNAIQYTVEK---- 783

Query: 962 NAMASKDTRSQEEI 975
           +A+   D   Q+ I
Sbjct: 784 DALPEVDASPQQNI 797



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 72/86 (83%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFD L LKKN GKEE RAR+LFYGLW+PD FM+RVE D  WSLMC
Sbjct: 288 RPGAFAIYLEPWHADIFDVLNLKKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMC 347

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLS+  GEKF++LY KYE++G
Sbjct: 348 PHRCPGLSECHGEKFEELYAKYESDG 373



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I  +Q     A    R ++   IGV GLAD F+++ LPF   E++ LN+ IFETIY+ +L
Sbjct: 487 IDVNQYPIEGAKKSNRSHRPVGIGVSGLADTFLRLGLPFASEEAKTLNEAIFETIYHASL 546

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGV----TPTDLWDWAAL 674
           EAS EIA   G Y+T+ GSP S+G LQ+++WGV    TP+   D +AL
Sbjct: 547 EASNEIAREKGSYETFAGSPASEGKLQFNLWGVDDVETPSHRKDQSAL 594



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW AIL++QIETGTPY+LYKDA N+KSNQQNL  I+
Sbjct: 379 VRARELWAAILEAQIETGTPYLLYKDAANKKSNQQNLGTIQ 419


>gi|385303542|gb|EIF47607.1| ribonucleoside-diphosphate reductase large chain [Dekkera
           bruxellensis AWRI1499]
          Length = 830

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 285/470 (60%), Positives = 357/470 (75%), Gaps = 6/470 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA   YLEPWH DI +FL+LKKN GKEE RARDLFY LWIPD FMRRVE D  WSL  
Sbjct: 308 RPGAICAYLEPWHADIMEFLDLKKNHGKEEMRARDLFYALWIPDLFMRRVEKDQVWSLFS 367

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +T  GLSD+WG +F+ LY++YE EG+++RQV ARK+W  IL SQ ETGTP++LYKDACN
Sbjct: 368 EDTAPGLSDTWGAEFESLYEQYEQEGRYLRQVKARKVWERILYSQTETGTPFLLYKDACN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
            K NQ+NLGTIK SNLC E+VEY+ KDE+AVCNL S+ L M++         +N  KL D
Sbjct: 428 AKCNQKNLGTIKSSNLCCEVVEYSCKDEIAVCNLGSVGLPMFVEXDGQGGXFFNLXKLHD 487

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V +++ +NLN++IDV  YP++E R SN RHRP+ +GVQGLAD F ++R  F   ESR LN
Sbjct: 488 VVRVLVRNLNRVIDVGAYPLDECRVSNTRHRPVAVGVQGLADAFFRLRYAFGSPESRRLN 547

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT---DLWDWAALK 384
           K IF+TIY+ AL+ S ++A ++GPY T+ GSP + G+LQYDMWG  P    DLWDW  LK
Sbjct: 548 KAIFQTIYHAALDQSADLARQEGPYSTFRGSPAANGVLQYDMWGTEPAETRDLWDWPGLK 607

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
            KI + G+RNSLL+A MPTAST+QILG  E FEP TSNIY+RRVLSGE QVVN +L+ DL
Sbjct: 608 XKIRRFGLRNSLLVALMPTASTSQILGFTECFEPITSNIYTRRVLSGEHQVVNSYLVDDL 667

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
             LGLW+ +MKDQ+I  NGSIQDI GIP+  K LYKTVW++ QK ++DMAADR  ++DQS
Sbjct: 668 DHLGLWNAHMKDQIIAANGSIQDIAGIPEHTKQLYKTVWDMSQKIIIDMAADRAPYVDQS 727

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           QS+N+++ +   AKM+SMHF+ W  GLKTGMYYLRT+ A+ AI+FT+  T
Sbjct: 728 QSMNLFLKDCTLAKMTSMHFYAWHKGLKTGMYYLRTQAASQAIKFTLSPT 777



 Score =  259 bits (661), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/193 (62%), Positives = 149/193 (77%), Gaps = 3/193 (1%)

Query: 769 FKYDMWGVTPT---DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            +YDMWG  P    DLWDW  LK KI + G+RNSLL+A MPTAST+QILG  E FEP TS
Sbjct: 585 LQYDMWGTEPAETRDLWDWPGLKXKIRRFGLRNSLLVALMPTASTSQILGFTECFEPITS 644

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIY+RRVLSGE QVVN +L+ DL  LGLW+ +MKDQ+I  NGSIQDI GIP+  K LYKT
Sbjct: 645 NIYTRRVLSGEHQVVNSYLVDDLDHLGLWNAHMKDQIIAANGSIQDIAGIPEHTKQLYKT 704

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VW++ QK ++DMAADR  ++DQSQS+N+++ +   AKM+SMHF+ W  GLKTGMYYLRT+
Sbjct: 705 VWDMSQKIIIDMAADRAPYVDQSQSMNLFLKDCTLAKMTSMHFYAWHKGLKTGMYYLRTQ 764

Query: 946 PAANAIQFTIDKT 958
            A+ AI+FT+  T
Sbjct: 765 AASQAIKFTLSPT 777



 Score =  130 bits (327), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA   YLEPWH DI +FL+LKKN GKEE RARDLFY LWIPD FMRRVE D  WSL  
Sbjct: 308 RPGAICAYLEPWHADIMEFLDLKKNHGKEEMRARDLFYALWIPDLFMRRVEKDQVWSLFS 367

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
            +   GLSD+WG +F+ LY++YE EG
Sbjct: 368 EDTAPGLSDTWGAEFESLYEQYEQEG 393



 Score =  113 bits (282), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 68/107 (63%), Gaps = 6/107 (5%)

Query: 584 CRRDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           CR  N       +GVQGLAD F ++R  F   ESR LNK IF+TIY+ AL+ S ++A ++
Sbjct: 510 CRVSNTRHRPVAVGVQGLADAFFRLRYAFGSPESRRLNKAIFQTIYHAALDQSADLARQE 569

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPT---DLWDWAALKVLALVYGLK 684
           GPY T+ GSP + G+LQYDMWG  P    DLWDW  LK     +GL+
Sbjct: 570 GPYSTFRGSPAANGVLQYDMWGTEPAETRDLWDWPGLKXKIRRFGLR 616



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDW--AALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D WG     L++      + L  V   K+W  IL SQ ETGTP++LYKDACN K NQ+NL
Sbjct: 376 DTWGAEFESLYEQYEQEGRYLRQVKARKVWERILYSQTETGTPFLLYKDACNAKCNQKNL 435

Query: 717 EVIE 720
             I+
Sbjct: 436 GTIK 439


>gi|448527129|ref|XP_003869437.1| Rnr3 ribonucleotide reductase large subunit [Candida orthopsilosis
           Co 90-125]
 gi|380353790|emb|CCG23302.1| Rnr3 ribonucleotide reductase large subunit [Candida orthopsilosis]
          Length = 819

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/471 (61%), Positives = 362/471 (76%), Gaps = 2/471 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIFD L ++KN G EE R RDLFYGLWIPD FM+RV+S   WSL  
Sbjct: 291 RPGAFAIYMEPWHADIFDILNMRKNHGNEELRTRDLFYGLWIPDLFMQRVKSGDDWSLFS 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G +F  +Y+KYE +G     + A+KLW AIL+SQ ETG PYMLYKDACN
Sbjct: 351 PDIAPGLSDVYGSEFVKMYEKYETQGLASATIKAQKLWLAILESQTETGGPYMLYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +K+NQ NLGTIK SNLC EIVEY++ DE AVCNLAS+ L  ++   D    ++F KL  V
Sbjct: 411 QKTNQSNLGTIKSSNLCCEIVEYSAPDETAVCNLASLGLPSFLRSTDDCIEFDFDKLHSV 470

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K+VT+NLNK+IDV  YPVE A  SN R+RPI +GVQGLADLF+++RLPFD  E++ LN 
Sbjct: 471 TKVVTRNLNKVIDVTRYPVESAETSNKRNRPIALGVQGLADLFLELRLPFDSQEAKKLNS 530

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QIFETIY+ A+EAS E+A  D PY T+ GSP S+G LQ+DMW   P    DW  LK+ + 
Sbjct: 531 QIFETIYHAAVEASIELAKLDEPYFTFAGSPASKGTLQFDMWNHKPEFYDDWDQLKDDVK 590

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            +G+RNSLLIAPMPTAST+QILG NE FEPYTSN+Y+RRV+SGEFQVVN +L++DL +LG
Sbjct: 591 NYGMRNSLLIAPMPTASTSQILGFNECFEPYTSNLYTRRVISGEFQVVNKYLIKDLSDLG 650

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W+  M++++I + GSIQDI  IP+ +K+LY+TVWE+ QK ++DMAADRG FIDQSQS+N
Sbjct: 651 IWNSAMRNRIIQDGGSIQDISVIPKDIKELYRTVWELKQKDIIDMAADRGKFIDQSQSMN 710

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           IYM      K++S HF+ W+ GLKTGMYYLRT+ A  AIQFT+DK K+A A
Sbjct: 711 IYMQNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAATRAIQFTVDKDKVALA 761



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/195 (60%), Positives = 154/195 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P    DW  LK+ +  +G+RNSLLIAPMPTAST+QILG NE FEPYTSN+Y
Sbjct: 567 LQFDMWNHKPEFYDDWDQLKDDVKNYGMRNSLLIAPMPTASTSQILGFNECFEPYTSNLY 626

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRV+SGEFQVVN +L++DL +LG+W+  M++++I + GSIQDI  IP+ +K+LY+TVWE
Sbjct: 627 TRRVISGEFQVVNKYLIKDLSDLGIWNSAMRNRIIQDGGSIQDISVIPKDIKELYRTVWE 686

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DMAADRG FIDQSQS+NIYM      K++S HF+ W+ GLKTGMYYLRT+ A 
Sbjct: 687 LKQKDIIDMAADRGKFIDQSQSMNIYMQNPTIGKLTSCHFYAWEKGLKTGMYYLRTQAAT 746

Query: 949 NAIQFTIDKTKMANA 963
            AIQFT+DK K+A A
Sbjct: 747 RAIQFTVDKDKVALA 761



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIFD L ++KN G EE R RDLFYGLWIPD FM+RV+S   WSL  
Sbjct: 291 RPGAFAIYMEPWHADIFDILNMRKNHGNEELRTRDLFYGLWIPDLFMQRVKSGDDWSLFS 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +G +F  +Y+KYE +GL
Sbjct: 351 PDIAPGLSDVYGSEFVKMYEKYETQGL 377



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 111/203 (54%), Gaps = 12/203 (5%)

Query: 529 LGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDN 588
           LGL +   +LR+    + I+F  DK      + +++    + I   +    +A    + N
Sbjct: 447 LGLPS---FLRS--TDDCIEFDFDKLHSVTKVVTRNL--NKVIDVTRYPVESAETSNKRN 499

Query: 589 KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 648
           +   +GVQGLADLF+++RLPFD  E++ LN QIFETIY+ A+EAS E+A  D PY T+ G
Sbjct: 500 RPIALGVQGLADLFLELRLPFDSQEAKKLNSQIFETIYHAAVEASIELAKLDEPYFTFAG 559

Query: 649 SPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDAC 707
           SP S+G LQ+DMW   P    DW  LK     YG++   ++L + + T  T  +L  + C
Sbjct: 560 SPASKGTLQFDMWNHKPEFYDDWDQLKDDVKNYGMR--NSLLIAPMPTASTSQILGFNEC 617

Query: 708 NR--KSNQQNLEVIEELYNMVNK 728
                SN     VI   + +VNK
Sbjct: 618 FEPYTSNLYTRRVISGEFQVVNK 640



 Score = 63.2 bits (152), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (76%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           A +   KLW AIL+SQ ETG PYMLYKDACN+K+NQ NL  I+
Sbjct: 380 ATIKAQKLWLAILESQTETGGPYMLYKDACNQKTNQSNLGTIK 422


>gi|19074701|ref|NP_586207.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
 gi|51701818|sp|Q8SR37.1|RIR1_ENCCU RecName: Full=Ribonucleoside-diphosphate reductase large chain;
           AltName: Full=Ribonucleotide reductase
 gi|19069343|emb|CAD25811.1| RIBONUCLEOSIDE DIPHOSPHATE REDUCTASE [Encephalitozoon cuniculi
           GB-M1]
          Length = 768

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 286/474 (60%), Positives = 372/474 (78%), Gaps = 7/474 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
           P+   GLSD WGE+F+ LY KYE   K I +  VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 403

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           CNR SNQQ+LGTIK SNLC EIVEY+S +E +VCNLASI L M++   D  ++F   + V
Sbjct: 404 CNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVK--DGWFDFEAFRRV 461

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            KI+T NLN++ID N+YPVEEAR SNMR+RPIGIGVQGLADLF  +RL F+ + +R LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            IFE +YY A+EASCE+A ++GP+ +YEGSP+S+GI  +++ G   +  WDW  L+E+I 
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY+RR  +GEFQ+VN HL+ DLV LG
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK+ +I N GSIQ+I  IP +++++YKT WEI  K+V+D+AADR  F+DQSQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           I++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  +AI+FT+DK      ++S
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755



 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 112/198 (56%), Positives = 153/198 (77%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++ G   +  WDW  L+E+I +HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY
Sbjct: 558 FHFELAGRKASGNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIY 617

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN HL+ DLV LGLW   MK+ +I N GSIQ+I  IP +++++YKT WE
Sbjct: 618 TRRTHAGEFQIVNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWE 677

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+V+D+AADR  F+DQSQSLNI++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  
Sbjct: 678 IKMKSVIDLAADRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 737

Query: 949 NAIQFTIDKTKMANAMAS 966
           +AI+FT+DK      ++S
Sbjct: 738 SAIKFTVDKKLAEKTLSS 755



 Score =  129 bits (323), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 67/83 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F  LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GLSD WGE+F+ LY KYE
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE 369



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/97 (46%), Positives = 68/97 (70%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLADLF  +RL F+ + +R LN+ IFE +YY A+EASCE+A ++GP+ +YE
Sbjct: 490 NRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYE 549

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP+S+GI  +++ G   +  WDW  L+     +G++
Sbjct: 550 GSPISKGIFHFELAGRKASGNWDWEGLRERIRRHGVR 586



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           SQ +   D+WG     L+  +       +V   KLW AI+++QIETGTPYM YKDACNR 
Sbjct: 348 SQAVGLSDVWGEEFNALYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 711 SNQQNLEVIE 720
           SNQQ+L  I+
Sbjct: 408 SNQQHLGTIK 417


>gi|146414790|ref|XP_001483365.1| hypothetical protein PGUG_04094 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 814

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 285/462 (61%), Positives = 364/462 (78%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+ L+LKKN GKEE RARDLFY LWIPD FM RV +D QWS   
Sbjct: 296 RPGAFAIYLEPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +GE+F  LY+ YEA+G  ++ V A+KLW AILDSQIETG PYMLYKDACN
Sbjct: 356 PDQAPGLENCYGEEFKRLYESYEAKGLAMKVVRAQKLWDAILDSQIETGGPYMLYKDACN 415

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC E+V+Y+S DEVAVCNL S+AL M++   +  ++   L  V K
Sbjct: 416 EKSNQKNLGTIKSSNLCCEVVQYSSPDEVAVCNLGSVALPMFVK--NDNFDSQLLHKVTK 473

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++  NLNK+IDV  YP+E AR SN +HRPI +GVQGLADLF+++ LPFD   +R LN Q+
Sbjct: 474 VLVNNLNKVIDVTAYPLESARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQV 533

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKEKIAK 389
           FETIY+ A+EAS E+A +DGPY+T+ GSP S+G+LQ+D+W   P+DL+ DW  LK+K+ K
Sbjct: 534 FETIYHAAVEASVELAIKDGPYETFAGSPASKGLLQFDLWNHKPSDLYTDWDELKQKVVK 593

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G+RNSLL+APMPTAST+QILG NE FEPYTSNIY+RRVL+GEFQVVN +L++ L EL L
Sbjct: 594 SGMRNSLLVAPMPTASTSQILGFNECFEPYTSNIYTRRVLAGEFQVVNKYLVKKLTELNL 653

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W+  MKD+++V  GS+ +I+ IPQ ++D++KTVW+I Q+T++DMA DR  FIDQ QSLNI
Sbjct: 654 WNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVWDILQRTIIDMAVDRAKFIDQLQSLNI 713

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +M     +K++S HF+ WK GLKTG+YYLRT+ A+ AIQFT+
Sbjct: 714 HMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSASRAIQFTV 755



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 151/188 (80%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLW-DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W   P+DL+ DW  LK+K+ K G+RNSLL+APMPTAST+QILG NE FEPYTSNI
Sbjct: 568 LQFDLWNHKPSDLYTDWDELKQKVVKSGMRNSLLVAPMPTASTSQILGFNECFEPYTSNI 627

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEFQVVN +L++ L EL LW+  MKD+++V  GS+ +I+ IPQ ++D++KTVW
Sbjct: 628 YTRRVLAGEFQVVNKYLVKKLTELNLWNKQMKDRILVAGGSVMNIDEIPQHVRDVFKTVW 687

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           +I Q+T++DMA DR  FIDQ QSLNI+M     +K++S HF+ WK GLKTG+YYLRT+ A
Sbjct: 688 DILQRTIIDMAVDRAKFIDQLQSLNIHMRNPTKSKLTSCHFYAWKQGLKTGLYYLRTQSA 747

Query: 948 ANAIQFTI 955
           + AIQFT+
Sbjct: 748 SRAIQFTV 755



 Score =  133 bits (334), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+ L+LKKN GKEE RARDLFY LWIPD FM RV +D QWS   
Sbjct: 296 RPGAFAIYLEPWHADIFEVLDLKKNHGKEEMRARDLFYALWIPDLFMERVRNDEQWSCFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GL + +GE+F  LY+ YEA+GL
Sbjct: 356 PDQAPGLENCYGEEFKRLYESYEAKGL 382



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A I  + ++   +GVQGLADLF+++ LPFD   +R LN Q+FETIY+ A+EAS E+A +
Sbjct: 492 SARISNKKHRPIAVGVQGLADLFLKLELPFDSPRARELNIQVFETIYHAAVEASVELAIK 551

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLW-DWAALKVLALVYGLK 684
           DGPY+T+ GSP S+G+LQ+D+W   P+DL+ DW  LK   +  G++
Sbjct: 552 DGPYETFAGSPASKGLLQFDLWNHKPSDLYTDWDELKQKVVKSGMR 597



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 35/44 (79%)

Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           + +V   KLW AILDSQIETG PYMLYKDACN KSNQ+NL  I+
Sbjct: 384 MKVVRAQKLWDAILDSQIETGGPYMLYKDACNEKSNQKNLGTIK 427


>gi|353243108|emb|CCA74687.1| probable RNR1-ribonucleoside-diphosphate reductase large subunit
           [Piriformospora indica DSM 11827]
          Length = 916

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 289/469 (61%), Positives = 366/469 (78%), Gaps = 18/469 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+R ESD  WSL C
Sbjct: 313 RPGAFAIYIEPWHADIFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRAESDGDWSLFC 372

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL + +G++F++LY +YE EG+  + + A+KL+FA++++QIETG P+MLYKDA N
Sbjct: 373 PNEAPGLHEVYGDEFEELYTRYEREGRARKTIKAQKLFFAVMEAQIETGGPFMLYKDAAN 432

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQQNLGTIK SNLCTEI+EY+S DEVAVCNLAS+AL  ++   D  Y+F KL DV K
Sbjct: 433 RKSNQQNLGTIKSSNLCTEIIEYSSPDEVAVCNLASLALPTFVK--DGAYDFQKLHDVTK 490

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YPV EAR SNMRHRPIGIGVQGLAD F+ +R+PFD  +++ LN QI
Sbjct: 491 VVAFNLNRIIDVNYYPVPEARKSNMRHRPIGIGVQGLADTFMALRMPFDSVQAKELNIQI 550

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ A EAS E+A   GPY+T+EGSP S+G LQYD+WGV PT LWDW +LKEKIA H
Sbjct: 551 FETIYHAACEASAEMAEMMGPYETFEGSPASEGKLQYDLWGVQPTGLWDWDSLKEKIAAH 610

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTA+T+ ++  ++                G  ++V   LLR+LV+L LW
Sbjct: 611 GMRNSLLLAPMPTATTSTLVEFSQ----------------GSSRLVCPWLLRELVDLKLW 654

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D MK+ +I + GSIQ I GIP  +K +YKTVWEI QK V+D+AADRGAFI QSQSLN++
Sbjct: 655 NDEMKNMIIAHGGSIQKIPGIPDDVKAIYKTVWEISQKKVIDLAADRGAFICQSQSLNVH 714

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +   +  +++SMHF+GWK GLKTGMYYLRT+PAA AIQFT+D++ +  A
Sbjct: 715 LQNPSVGQLTSMHFYGWKKGLKTGMYYLRTRPAAQAIQFTVDQSILNKA 763



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 114/209 (54%), Positives = 148/209 (70%), Gaps = 22/209 (10%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGV PT LWDW +LKEKIA HG+RNSLL+APMPTA+T+ ++  ++          
Sbjct: 585 LQYDLWGVQPTGLWDWDSLKEKIAAHGMRNSLLLAPMPTATTSTLVEFSQ---------- 634

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
                 G  ++V   LLR+LV+L LW+D MK+ +I + GSIQ I GIP  +K +YKTVWE
Sbjct: 635 ------GSSRLVCPWLLRELVDLKLWNDEMKNMIIAHGGSIQKIPGIPDDVKAIYKTVWE 688

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK V+D+AADRGAFI QSQSLN+++   +  +++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 689 ISQKKVIDLAADRGAFICQSQSLNVHLQNPSVGQLTSMHFYGWKKGLKTGMYYLRTRPAA 748

Query: 949 NAIQFTID-----KTKMANAMA-SKDTRS 971
            AIQFT+D     K K AN +  S  TRS
Sbjct: 749 QAIQFTVDQSILNKAKEANGITPSTPTRS 777



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM+R ESD  WSL C
Sbjct: 313 RPGAFAIYIEPWHADIFEFLDLRKNHGKEEVRARDLFYALWIPDLFMKRAESDGDWSLFC 372

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL + +G++F++LY +YE EG
Sbjct: 373 PNEAPGLHEVYGDEFEELYTRYEREG 398



 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 70/92 (76%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD F+ +R+PFD  +++ LN QIFETIY+ A EAS E+A   GPY+T+EGSP S
Sbjct: 522 IGVQGLADTFMALRMPFDSVQAKELNIQIFETIYHAACEASAEMAEMMGPYETFEGSPAS 581

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQYD+WGV PT LWDW +LK     +G++
Sbjct: 582 EGKLQYDLWGVQPTGLWDWDSLKEKIAAHGMR 613



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 5/63 (7%)

Query: 709 RKSNQQNLE-VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
            K  ++N   VIE+LY    K  G    MIS + YEI+M NA+  +S IIYDRDF+YN+F
Sbjct: 111 HKETKKNFSAVIEDLYKHNGKPAG----MISKEVYEIVMANAELFDSTIIYDRDFHYNYF 166

Query: 768 GFK 770
           GFK
Sbjct: 167 GFK 169



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KL+FA++++QIETG P+MLYKDA NRKSNQQNL  I+
Sbjct: 408 KLFFAVMEAQIETGGPFMLYKDAANRKSNQQNLGTIK 444


>gi|171399|gb|AAA34569.1| ribonucleotide reductase DNA damage-inducible regulatory subunit,
           partial [Saccharomyces cerevisiae]
          Length = 756

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 281/447 (62%), Positives = 359/447 (80%), Gaps = 5/447 (1%)

Query: 110 LELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLY 169
            +++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  P+   GL D WG++F++LY
Sbjct: 310 FDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELY 369

Query: 170 KKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTE 229
            +YE EG+  + + A+KLW+AIL +Q ETGTP+M+YKDACNRK+NQQNLGTIK SNLC E
Sbjct: 370 TRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIKSSNLCCE 428

Query: 230 IVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLKDVAKIVTKNLNKIIDVNFY 285
           IVEY+S DE AVCNLASIAL  ++  ++     +YNF +L ++AK++T NLN++ID N+Y
Sbjct: 429 IVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLHEIAKVITHNLNRVIDRNYY 488

Query: 286 PVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEI 345
           PV EARNSNM+HRPI +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+
Sbjct: 489 PVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCEL 548

Query: 346 AARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAS 405
           A ++G Y T+EGSP S+GILQ+DMW   P  +WDW  L++ I KHG+RNSL +APMPTAS
Sbjct: 549 AQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTAS 608

Query: 406 TAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 465
           T+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSI
Sbjct: 609 TSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSI 668

Query: 466 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFH 525
           Q +  +PQ+LK+LYKTVWEI QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+
Sbjct: 669 QGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFY 728

Query: 526 GWKLGLKTGMYYLRTKPAANAIQFTID 552
           GWK GLKTGMYYLRT+ A+ AIQFTID
Sbjct: 729 GWKKGLKTGMYYLRTQAASAAIQFTID 755



 Score =  275 bits (702), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 154/188 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW   P  +WDW  L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 568 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK  LI  NGSIQ +  +PQ+LK+LYKTVWE
Sbjct: 628 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  +IDQS SLN+++   +  K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 688 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 747

Query: 949 NAIQFTID 956
            AIQFTID
Sbjct: 748 AAIQFTID 755



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD ++ +RLPF+  E++ LNKQIFETIY+  LEASCE+A ++G Y T+EGSP 
Sbjct: 504 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 563

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ+DMW   P  +WDW  L+   + +GL+
Sbjct: 564 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 596



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 49/67 (73%)

Query: 20  LELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLY 79
            +++K  GKEE RARDLF  LWIPD FM+RV+ D  W+L  P+A  GL D WG++F++LY
Sbjct: 310 FDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFSPSAAPGLDDVWGDEFEELY 369

Query: 80  KKYEAEG 86
            +YE EG
Sbjct: 370 TRYEREG 376



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 10/120 (8%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT  +L + AA +  A +  +   +A L ++I             +++
Sbjct: 39  VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +VIE+L++ +N  TG   PMISD+ Y I+M+    LNSAI+YDRDF Y +FGFK
Sbjct: 90  TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVME-TRYLNSAIVYDRDFQYTYFGFK 148



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL +Q ETGTP+M+YKDACNRK+NQQNL  I+
Sbjct: 385 KLWYAILQAQTETGTPFMVYKDACNRKTNQQNLGTIK 421


>gi|254567974|ref|XP_002491097.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Komagataella pastoris GS115]
 gi|238030894|emb|CAY68817.1| One of two large regulatory subunits of ribonucleotide-diphosphate
           reductase [Komagataella pastoris GS115]
 gi|328352376|emb|CCA38775.1| ribonucleoside-diphosphate reductase subunit M1 [Komagataella
           pastoris CBS 7435]
          Length = 774

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 287/505 (56%), Positives = 384/505 (76%), Gaps = 5/505 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RP AFAIYLEPWH ++FD L L+KN GKEE RARDLFY LWIPD FM +VE +  W L  
Sbjct: 274 RPSAFAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFN 333

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P   +GL+D +GE+F+ LY +YE +G ++R++PA++LW AI+D+QIETGTP+MLYKD+CN
Sbjct: 334 PLHAKGLNDVYGEQFNLLYAEYEKKGMYVRKIPAQQLWNAIVDAQIETGTPFMLYKDSCN 393

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ NLGTI+CSNLC EIVEY+S+D++AVCNLASI L  Y+   D  ++F  LK+  +
Sbjct: 394 RKSNQSNLGTIQCSNLCCEIVEYSSRDQIAVCNLASIGLPKYV--VDGKFDFESLKNSVR 451

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID++ YPV EA  SN   RP+ IGVQGL D F+ +++P+D  E+  LN QI
Sbjct: 452 IVTENLNKVIDISKYPVPEASYSNDLTRPMAIGVQGLWDTFMLLKIPYDSEEAAALNSQI 511

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WDWAALKEKIAK 389
           FETIYY ALE S  IA +DGPY++++GSP S+G+LQ D+W V   DL  DW +L+  I K
Sbjct: 512 FETIYYSALETSMNIAKKDGPYKSFQGSPASKGLLQMDLWNVKEEDLTLDWKSLRSDIVK 571

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL+ PMPTAST+QILG  ESFEP + N Y+RRV SGE+QVVN +L+ DL+ LGL
Sbjct: 572 HGLRNSLLVGPMPTASTSQILGFCESFEPLSYNFYTRRVSSGEYQVVNKYLIDDLINLGL 631

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W D+++ ++I N+GSIQ+I+ IPQ++K LYKTVWEI Q+  ++MAADRG FIDQSQS+N+
Sbjct: 632 WTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVWEISQRITINMAADRGRFIDQSQSMNL 691

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           Y+A+ N  K+++MHF+ WK GLKTGMYYLRTK A++AI+F+ID +K            ++
Sbjct: 692 YLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAASSAIKFSIDISKRKRDGTYNTPTKRQ 751

Query: 570 EIQADQEQAMAAMICRRDNKEDCIG 594
            +Q++  +   +  C+ +N E C G
Sbjct: 752 AVQSEALETTPS--CQLNNCESCSG 774



 Score =  256 bits (653), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 168/229 (73%), Gaps = 3/229 (1%)

Query: 769 FKYDMWGVTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            + D+W V   DL  DW +L+  I KHG+RNSLL+ PMPTAST+QILG  ESFEP + N 
Sbjct: 546 LQMDLWNVKEEDLTLDWKSLRSDIVKHGLRNSLLVGPMPTASTSQILGFCESFEPLSYNF 605

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRV SGE+QVVN +L+ DL+ LGLW D+++ ++I N+GSIQ+I+ IPQ++K LYKTVW
Sbjct: 606 YTRRVSSGEYQVVNKYLIDDLINLGLWTDSLRQEIIGNDGSIQEIDEIPQEVKSLYKTVW 665

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI Q+  ++MAADRG FIDQSQS+N+Y+A+ N  K+++MHF+ WK GLKTGMYYLRTK A
Sbjct: 666 EISQRITINMAADRGRFIDQSQSMNLYLAKPNRGKLTAMHFYAWKKGLKTGMYYLRTKAA 725

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           ++AI+F+ID +K            ++ +Q++  +   +  C+ +N E C
Sbjct: 726 SSAIKFSIDISKRKRDGTYNTPTKRQAVQSEALETTPS--CQLNNCESC 772



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RP AFAIYLEPWH ++FD L L+KN GKEE RARDLFY LWIPD FM +VE +  W L  
Sbjct: 274 RPSAFAIYLEPWHEEVFDLLNLRKNHGKEEIRARDLFYALWIPDLFMEKVEKNEDWCLFN 333

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFR 91
           P   +GL+D +GE+F+ LY +YE +G+ Y R
Sbjct: 334 PLHAKGLNDVYGEQFNLLYAEYEKKGM-YVR 363



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGL D F+ +++P+D  E+  LN QIFETIYY ALE S  IA +DGPY++++GSP S
Sbjct: 483 IGVQGLWDTFMLLKIPYDSEEAAALNSQIFETIYYSALETSMNIAKKDGPYKSFQGSPAS 542

Query: 653 QGILQYDMWGVTPTDL-WDWAALKVLALVYGLK 684
           +G+LQ D+W V   DL  DW +L+   + +GL+
Sbjct: 543 KGLLQMDLWNVKEEDLTLDWKSLRSDIVKHGLR 575



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AI+D+QIETGTP+MLYKD+CNRKSNQ NL  I+
Sbjct: 369 QLWNAIVDAQIETGTPFMLYKDSCNRKSNQSNLGTIQ 405


>gi|429966492|gb|ELA48489.1| ribonucleoside-diphosphate reductase, alpha subunit [Vavraia
           culicis 'floridensis']
          Length = 773

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 280/463 (60%), Positives = 367/463 (79%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIY+EPWH DIF+FL+++KNTGKEE RARD+F  LWIPD FMRRV +D  WSL  
Sbjct: 285 RPGSMAIYVEPWHSDIFEFLDIRKNTGKEELRARDIFTALWIPDLFMRRVHNDENWSLFS 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +    L + +G++FD  Y+ YE  G   R V A+KLW AIL SQIETGTPYM YKD+ N
Sbjct: 345 NDDVPNLYNLYGDEFDKAYEMYEKNGMARRTVRAQKLWKAILSSQIETGTPYMCYKDSAN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R +NQ++LGTIKCSNLC+EI+EYT ++E+AVCNLAS+ L  ++   D  +++ KLK V K
Sbjct: 405 RMNNQKHLGTIKCSNLCSEIMEYTEENEIAVCNLASLGLPRFMQ--DGQFDYEKLKMVTK 462

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV KNLNK+IDVN YP+ E RNSN++HRPIG+GVQGLAD+F+ +R+P+D  E+R +N +I
Sbjct: 463 IVVKNLNKVIDVNLYPLPETRNSNLKHRPIGLGVQGLADVFVMLRMPYDSKEARAVNLRI 522

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETI++ AL+ASCE+A   GPY +YEGSP+SQG+L +DMW V P    DW  L+ +IAK+
Sbjct: 523 FETIHFAALDASCELAKEYGPYDSYEGSPMSQGVLHFDMWNVVPVTNHDWRGLRARIAKY 582

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+A MPTAST+QILG NE FEP+T+NIY+RR L+GEFQVVN +L+ DL++L LW
Sbjct: 583 GVRNSLLVALMPTASTSQILGYNECFEPFTTNIYTRRTLAGEFQVVNTYLMHDLMKLNLW 642

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+ LI   GSIQ IEGIP ++K LYKT WE+  ++++D+AADR  ++DQSQSLNI+
Sbjct: 643 SDEMKNILIQEEGSIQRIEGIPDEIKRLYKTAWELKMRSLIDLAADRAPYVDQSQSLNIF 702

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           MA+  Y K++SMHF+G+K GLKTGMYYLRT+P + A++FT+D+
Sbjct: 703 MAQPTYPKLTSMHFYGFKRGLKTGMYYLRTRPISAAVKFTVDR 745



 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
             +DMW V P    DW  L+ +IAK+GVRNSLL+A MPTAST+QILG NE FEP+T+NIY
Sbjct: 557 LHFDMWNVVPVTNHDWRGLRARIAKYGVRNSLLVALMPTASTSQILGYNECFEPFTTNIY 616

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR L+GEFQVVN +L+ DL++L LW D MK+ LI   GSIQ IEGIP ++K LYKT WE
Sbjct: 617 TRRTLAGEFQVVNTYLMHDLMKLNLWSDEMKNILIQEEGSIQRIEGIPDEIKRLYKTAWE 676

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  ++++D+AADR  ++DQSQSLNI+MA+  Y K++SMHF+G+K GLKTGMYYLRT+P +
Sbjct: 677 LKMRSLIDLAADRAPYVDQSQSLNIFMAQPTYPKLTSMHFYGFKRGLKTGMYYLRTRPIS 736

Query: 949 NAIQFTIDK 957
            A++FT+D+
Sbjct: 737 AAVKFTVDR 745



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +R+P+D  E+R +N +IFETI++ AL+ASCE+A   GPY +YEGSP+S
Sbjct: 494 LGVQGLADVFVMLRMPYDSKEARAVNLRIFETIHFAALDASCELAKEYGPYDSYEGSPMS 553

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+L +DMW V P    DW  L+     YG++
Sbjct: 554 QGVLHFDMWNVVPVTNHDWRGLRARIAKYGVR 585



 Score =  115 bits (289), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 64/87 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIY+EPWH DIF+FL+++KNTGKEE RARD+F  LWIPD FMRRV +D  WSL  
Sbjct: 285 RPGSMAIYVEPWHSDIFEFLDIRKNTGKEELRARDIFTALWIPDLFMRRVHNDENWSLFS 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
            +    L + +G++FD  Y+ YE  G+
Sbjct: 345 NDDVPNLYNLYGDEFDKAYEMYEKNGM 371



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW AIL SQIETGTPYM YKD+ NR +NQ++L  I+
Sbjct: 376 VRAQKLWKAILSSQIETGTPYMCYKDSANRMNNQKHLGTIK 416


>gi|429965375|gb|ELA47372.1| ribonucleoside-diphosphate reductase, alpha subunit [Vavraia
           culicis 'floridensis']
          Length = 773

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 280/463 (60%), Positives = 367/463 (79%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIY+EPWH DIF+FL+++KNTGKEE RARD+F  LWIPD FMRRV +D  WSL  
Sbjct: 285 RPGSMAIYVEPWHSDIFEFLDIRKNTGKEELRARDIFTALWIPDLFMRRVHNDENWSLFS 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +    L + +G++FD  Y+ YE  G   R V A+KLW AIL SQIETGTPYM YKD+ N
Sbjct: 345 NDDVPNLYNLYGDEFDKAYEMYEKNGMARRTVRAQKLWKAILSSQIETGTPYMCYKDSAN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R +NQ++LGTIKCSNLC+EI+EYT ++E+AVCNLAS+ L  ++   D  +++ KLK V K
Sbjct: 405 RMNNQKHLGTIKCSNLCSEIMEYTEENEIAVCNLASLGLPRFMQ--DGQFDYEKLKMVTK 462

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV KNLNK+IDVN YP+ E RNSN++HRPIG+GVQGLAD+F+ +R+P+D  E+R +N +I
Sbjct: 463 IVVKNLNKVIDVNLYPLPETRNSNLKHRPIGLGVQGLADVFVMLRMPYDSKEARAVNLRI 522

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETI++ AL+ASCE+A   GPY +YEGSP+SQG+L +DMW V P    DW  L+ +IAK+
Sbjct: 523 FETIHFAALDASCELAKEYGPYDSYEGSPMSQGVLHFDMWNVVPVTNHDWRGLRARIAKY 582

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+A MPTAST+QILG NE FEP+T+NIY+RR L+GEFQVVN +L+ DL++L LW
Sbjct: 583 GVRNSLLVALMPTASTSQILGYNECFEPFTTNIYTRRTLAGEFQVVNTYLMHDLMKLNLW 642

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            D MK+ LI   GSIQ IEGIP ++K LYKT WE+  ++++D+AADR  ++DQSQSLNI+
Sbjct: 643 SDEMKNILIQEEGSIQRIEGIPDEIKRLYKTAWELKMRSLIDLAADRAPYVDQSQSLNIF 702

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           MA+  Y K++SMHF+G+K GLKTGMYYLRT+P + A++FT+D+
Sbjct: 703 MAQPTYPKLTSMHFYGFKRGLKTGMYYLRTRPISAAVKFTVDR 745



 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
             +DMW V P    DW  L+ +IAK+GVRNSLL+A MPTAST+QILG NE FEP+T+NIY
Sbjct: 557 LHFDMWNVVPVTNHDWRGLRARIAKYGVRNSLLVALMPTASTSQILGYNECFEPFTTNIY 616

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR L+GEFQVVN +L+ DL++L LW D MK+ LI   GSIQ IEGIP ++K LYKT WE
Sbjct: 617 TRRTLAGEFQVVNTYLMHDLMKLNLWSDEMKNILIQEEGSIQRIEGIPDEIKRLYKTAWE 676

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  ++++D+AADR  ++DQSQSLNI+MA+  Y K++SMHF+G+K GLKTGMYYLRT+P +
Sbjct: 677 LKMRSLIDLAADRAPYVDQSQSLNIFMAQPTYPKLTSMHFYGFKRGLKTGMYYLRTRPIS 736

Query: 949 NAIQFTIDK 957
            A++FT+D+
Sbjct: 737 AAVKFTVDR 745



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +R+P+D  E+R +N +IFETI++ AL+ASCE+A   GPY +YEGSP+S
Sbjct: 494 LGVQGLADVFVMLRMPYDSKEARAVNLRIFETIHFAALDASCELAKEYGPYDSYEGSPMS 553

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+L +DMW V P    DW  L+     YG++
Sbjct: 554 QGVLHFDMWNVVPVTNHDWRGLRARIAKYGVR 585



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 49/87 (56%), Positives = 64/87 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIY+EPWH DIF+FL+++KNTGKEE RARD+F  LWIPD FMRRV +D  WSL  
Sbjct: 285 RPGSMAIYVEPWHSDIFEFLDIRKNTGKEELRARDIFTALWIPDLFMRRVHNDENWSLFS 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
            +    L + +G++FD  Y+ YE  G+
Sbjct: 345 NDDVPNLYNLYGDEFDKAYEMYEKNGM 371



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW AIL SQIETGTPYM YKD+ NR +NQ++L  I+
Sbjct: 376 VRAQKLWKAILSSQIETGTPYMCYKDSANRMNNQKHLGTIK 416


>gi|403366375|gb|EJY82990.1| Ribonucleoside-diphosphate reductase [Oxytricha trifallax]
          Length = 864

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 286/478 (59%), Positives = 370/478 (77%), Gaps = 6/478 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH D+FDFL+L+KN GKEE RARDLF+ LWIPD FM+RV++D  W+L C
Sbjct: 312 RKGSFAIYLEPWHADVFDFLQLRKNHGKEEQRARDLFFALWIPDLFMKRVQADGDWTLFC 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL +  G++F+ LY KYE +G   + + A+KLW AI++SQIETGTPYMLYKD  N
Sbjct: 372 PNEAKGLFEVHGQEFEALYTKYEQQGIGRKTMKAQKLWEAIIESQIETGTPYMLYKDHAN 431

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+EYTS DEVAVCNLASI+L  Y+   D  +++ KL  V  
Sbjct: 432 SKSNQKNLGTIKSSNLCCEIIEYTSPDEVAVCNLASISLPRYVK--DGVFDYEKLHKVTY 489

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            +T NLN+IID NFYP +EA+NSNMRHRPIGIG+QGLAD  + +++PF+   +   N++I
Sbjct: 490 QITINLNRIIDGNFYPCDEAKNSNMRHRPIGIGIQGLADALMLLKIPFEDERAYQFNQEI 549

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-PTDLWDWAALKEKIAK 389
           FETIY+ ++++S ++A  +G YQ++ GSP+SQGI QYDMW    P++ ++W  L+E++ K
Sbjct: 550 FETIYHASMQSSVDLAKVEGHYQSFPGSPLSQGIFQYDMWNEKLPSNRYNWETLREEVKK 609

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
            G RNSLL+APMPTAST+QILGNNESFEPYT+NIY+RRVL+GEF  VN HL+RDL+ L L
Sbjct: 610 FGARNSLLVAPMPTASTSQILGNNESFEPYTTNIYTRRVLAGEFVCVNPHLVRDLISLDL 669

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           W   +++QL+ +NGSIQ I GIP  +K LYKT+WEIPQK ++++A  R  FI QSQSLNI
Sbjct: 670 WTQEVRNQLVGHNGSIQSISGIPDDIKKLYKTIWEIPQKQLINLARARAPFICQSQSLNI 729

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           YM E  Y K+SS HF+ W+LGLKTG YYLRT+PA +AI+FT+D   M   M S D+ S
Sbjct: 730 YMGEATYTKLSSAHFYAWQLGLKTGQYYLRTRPARDAIKFTLDVESM---MKSTDSSS 784



 Score =  265 bits (676), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 157/204 (76%), Gaps = 4/204 (1%)

Query: 769 FKYDMWGVT-PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
           F+YDMW    P++ ++W  L+E++ K G RNSLL+APMPTAST+QILGNNESFEPYT+NI
Sbjct: 584 FQYDMWNEKLPSNRYNWETLREEVKKFGARNSLLVAPMPTASTSQILGNNESFEPYTTNI 643

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y+RRVL+GEF  VN HL+RDL+ L LW   +++QL+ +NGSIQ I GIP  +K LYKT+W
Sbjct: 644 YTRRVLAGEFVCVNPHLVRDLISLDLWTQEVRNQLVGHNGSIQSISGIPDDIKKLYKTIW 703

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EIPQK ++++A  R  FI QSQSLNIYM E  Y K+SS HF+ W+LGLKTG YYLRT+PA
Sbjct: 704 EIPQKQLINLARARAPFICQSQSLNIYMGEATYTKLSSAHFYAWQLGLKTGQYYLRTRPA 763

Query: 948 ANAIQFTIDKTKMANAMASKDTRS 971
            +AI+FT+D   M   M S D+ S
Sbjct: 764 RDAIKFTLDVESM---MKSTDSSS 784



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH D+FDFL+L+KN GKEE RARDLF+ LWIPD FM+RV++D  W+L C
Sbjct: 312 RKGSFAIYLEPWHADVFDFLQLRKNHGKEEQRARDLFFALWIPDLFMKRVQADGDWTLFC 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN  +GL +  G++F+ LY KYE +G+
Sbjct: 372 PNEAKGLFEVHGQEFEALYTKYEQQGI 398



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 61/84 (72%), Gaps = 1/84 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD  + +++PF+   +   N++IFETIY+ ++++S ++A  +G YQ++ GSP+S
Sbjct: 521 IGIQGLADALMLLKIPFEDERAYQFNQEIFETIYHASMQSSVDLAKVEGHYQSFPGSPLS 580

Query: 653 QGILQYDMWGVT-PTDLWDWAALK 675
           QGI QYDMW    P++ ++W  L+
Sbjct: 581 QGIFQYDMWNEKLPSNRYNWETLR 604



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW AI++SQIETGTPYMLYKD  N KSNQ+NL  I+
Sbjct: 407 KLWEAIIESQIETGTPYMLYKDHANSKSNQKNLGTIK 443



 Score = 44.3 bits (103), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 20/154 (12%)

Query: 622 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW-----AALKV 676
            E +  G + A  E    +  Y+      +   ++ Y   G+  TDL +      A L +
Sbjct: 30  MEAMQVGKIRARLEKLLENLAYKYINLDIIITKVVSYAQNGIKTTDLDNLLSETTAYLNI 89

Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPM 736
           L   YG KL   +  +++             ++++++   EVI  LYN      G    +
Sbjct: 90  LHPDYG-KLASRVAVTKL-------------HKETSEDFFEVISTLYNYTEYARGD-AAL 134

Query: 737 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           I++  Y+++ +N ++L +A+ Y RD++Y++FGFK
Sbjct: 135 IAEDVYKVVEENKEKLQAALNYKRDWDYDYFGFK 168


>gi|422933896|ref|YP_007003955.1| ribonucleotide reductase subunit 1 [Cyprinid herpesvirus 2]
 gi|386686209|gb|AFJ20561.1| ribonucleotide reductase subunit 1 [Cyprinid herpesvirus 2]
          Length = 824

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/515 (57%), Positives = 373/515 (72%), Gaps = 18/515 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLEPWH DIF+FL+L+KN G EE R RDLF  LWIPD FM+RV+ +  WSLMC
Sbjct: 303 RPGALAVYLEPWHADIFEFLDLRKNNGVEEQRTRDLFQALWIPDLFMQRVKDNKHWSLMC 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-AEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
           P  C GL +++GEKFD LY  YE  EG   R V AR+LW  IL +Q+ETG P+MLYKDA 
Sbjct: 363 PARCPGLDEAYGEKFDMLYTGYEKTEGAVKRTVSARELWDKILVAQLETGGPFMLYKDAA 422

Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP----ADKTYNFTKL 265
           NRKSN  +LGTIKCSNLCTEI++YT+KDEVAVCNLAS+ALN ++ P     +  +N  KL
Sbjct: 423 NRKSNHNHLGTIKCSNLCTEIIQYTNKDEVAVCNLASVALNAFVEPLHDGGELVFNHQKL 482

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +V K++T NLN +IDVNFYPV EA  SN RHRPIGIGVQGLAD+F  +R+PF   E++ 
Sbjct: 483 TEVVKVITLNLNNLIDVNFYPVPEAAASNRRHRPIGIGVQGLADVFQMLRMPFTSPEAKR 542

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAA 382
           LNK IFETIY+ AL  SC  A   GPY++Y+GSPVS+G+LQ+DMWG++  DL    DW  
Sbjct: 543 LNKMIFETIYHAALTQSCAQAELYGPYESYDGSPVSKGLLQFDMWGLSERDLGGHCDWNT 602

Query: 383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           L++ I + G+RNSLL+APMPTASTAQILGNNES EP+TSN+Y RRVLSG+FQVVN H+++
Sbjct: 603 LRKSINRFGLRNSLLVAPMPTASTAQILGNNESIEPFTSNLYQRRVLSGDFQVVNKHMVK 662

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
            L E GLW D M+ +L+VN GS+Q I   P +LKD++KT +E+PQK ++DMAADR  F+D
Sbjct: 663 VLEERGLWTDEMRTELLVNKGSVQAIASFPSELKDVFKTAYELPQKDLIDMAADRAPFVD 722

Query: 503 QSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           QSQSLN+++ E    +   K++ MH H W  GLKTGMYYLRTK A   +QF++     A 
Sbjct: 723 QSQSLNLFLCENDPDLKMKKLTRMHMHAWSRGLKTGMYYLRTKAAVAPVQFSVAPEVAAA 782

Query: 559 AMASK----DARSQEEIQADQEQAMAAM--ICRRD 587
           A   K    D  +  +    Q  A AA+  +C  D
Sbjct: 783 ASKRKRDASDTNNGTKSPKKQSTAAAALEIVCTDD 817



 Score =  247 bits (630), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 161/236 (68%), Gaps = 13/236 (5%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
            ++DMWG++  DL    DW  L++ I + G+RNSLL+APMPTASTAQILGNNES EP+TS
Sbjct: 582 LQFDMWGLSERDLGGHCDWNTLRKSINRFGLRNSLLVAPMPTASTAQILGNNESIEPFTS 641

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           N+Y RRVLSG+FQVVN H+++ L E GLW D M+ +L+VN GS+Q I   P +LKD++KT
Sbjct: 642 NLYQRRVLSGDFQVVNKHMVKVLEERGLWTDEMRTELLVNKGSVQAIASFPSELKDVFKT 701

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE----INYAKMSSMHFHGWKLGLKTGMYY 941
            +E+PQK ++DMAADR  F+DQSQSLN+++ E    +   K++ MH H W  GLKTGMYY
Sbjct: 702 AYELPQKDLIDMAADRAPFVDQSQSLNLFLCENDPDLKMKKLTRMHMHAWSRGLKTGMYY 761

Query: 942 LRTKPAANAIQFTIDKTKMANAMASK----DTRSQEEIQADQEQAMAAM--ICRRD 991
           LRTK A   +QF++     A A   K    DT +  +    Q  A AA+  +C  D
Sbjct: 762 LRTKAAVAPVQFSVAPEVAAAASKRKRDASDTNNGTKSPKKQSTAAAALEIVCTDD 817



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 67/89 (75%), Gaps = 1/89 (1%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLEPWH DIF+FL+L+KN G EE R RDLF  LWIPD FM+RV+ +  WSLMC
Sbjct: 303 RPGALAVYLEPWHADIFEFLDLRKNNGVEEQRTRDLFQALWIPDLFMQRVKDNKHWSLMC 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYE-AEGLV 88
           P  C GL +++GEKFD LY  YE  EG V
Sbjct: 363 PARCPGLDEAYGEKFDMLYTGYEKTEGAV 391



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 3/107 (2%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A    R ++   IGVQGLAD+F  +R+PF   E++ LNK IFETIY+ AL  SC  A   
Sbjct: 507 AAASNRRHRPIGIGVQGLADVFQMLRMPFTSPEAKRLNKMIFETIYHAALTQSCAQAELY 566

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           GPY++Y+GSPVS+G+LQ+DMWG++  DL    DW  L+     +GL+
Sbjct: 567 GPYESYDGSPVSKGLLQFDMWGLSERDLGGHCDWNTLRKSINRFGLR 613



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 37/50 (74%)

Query: 721 ELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +LY+ VN +T    P++S++ +E+ +K+   L++A+++ RDF+ N+FGFK
Sbjct: 110 QLYHNVNPDTKENAPLVSERFFELSVKHKSELDAAVVHGRDFDLNYFGFK 159



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 29/41 (70%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW  IL +Q+ETG P+MLYKDA NRKSN  +L  I+
Sbjct: 395 VSARELWDKILVAQLETGGPFMLYKDAANRKSNHNHLGTIK 435


>gi|312599278|gb|ADQ91301.1| hypothetical protein BpV2_134c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 748

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/464 (61%), Positives = 358/464 (77%), Gaps = 3/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLE++ N G EE R RDLF  +WIPD FM+RVES   WSL C
Sbjct: 278 RKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  RGLSD +G++F++LY+KYEA+G   + VPA ++W AI+ SQ ETGTPYMLYKDACN
Sbjct: 338 PDVARGLSDVYGKEFEELYEKYEADGIATKVVPASEVWKAIIKSQSETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSN +++GTIK SNLCTEIVEYT KDE AVCNLASIAL  Y++   K +N  +L  V K
Sbjct: 398 EKSNHKHIGTIKSSNLCTEIVEYTDKDETAVCNLASIALPKYVDVEKKEFNHEELHRVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+ID NFYP E  + SNMRHRPIGIGVQGLAD+FI +R+ F   ESR LN  I
Sbjct: 458 MVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP--TDLWDWAALKEKIA 388
           FETIY+ +LE+SCE+A   GPY++++GSP S+GILQ+DMW   P  +  +DW A++E + 
Sbjct: 518 FETIYHASLESSCELAEMYGPYESFKGSPFSKGILQFDMWDRDPKFSGRYDWNAMRE-LV 576

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G  NSLL+APMPTAST+QILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL E G
Sbjct: 577 KKGTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERG 636

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MKD ++  NGS+Q+I  IP  LK+LYKTVWE+ QKT++DMAADRG +IDQSQS+N
Sbjct: 637 LWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMN 696

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +++     +K+SSMH + WK GLKTGMYYLR+K  +  IQF+++
Sbjct: 697 LFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLE 740



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 144/190 (75%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTP--TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW   P  +  +DW A++E + K G  NSLL+APMPTAST+QILGNNE FEPYT+N
Sbjct: 552 LQFDMWDRDPKFSGRYDWNAMRE-LVKKGTMNSLLLAPMPTASTSQILGNNECFEPYTTN 610

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RR L+GEF VVN HL+ DL E GLW   MKD ++  NGS+Q+I  IP  LK+LYKTV
Sbjct: 611 IYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTV 670

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WE+ QKT++DMAADRG +IDQSQS+N+++     +K+SSMH + WK GLKTGMYYLR+K 
Sbjct: 671 WEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKA 730

Query: 947 AANAIQFTID 956
            +  IQF+++
Sbjct: 731 KSRPIQFSLE 740



 Score =  130 bits (326), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLE++ N G EE R RDLF  +WIPD FM+RVES   WSL C
Sbjct: 278 RKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESGGNWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  RGLSD +G++F++LY+KYEA+G+
Sbjct: 338 PDVARGLSDVYGKEFEELYEKYEADGI 364



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+FI +R+ F   ESR LN  IFETIY+ +LE+SCE+A   GPY++++GSP S
Sbjct: 489 IGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEMYGPYESFKGSPFS 548

Query: 653 QGILQYDMWGVTP--TDLWDWAALKVLA 678
           +GILQ+DMW   P  +  +DW A++ L 
Sbjct: 549 KGILQFDMWDRDPKFSGRYDWNAMRELV 576



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V   ++W AI+ SQ ETGTPYMLYKDACN KSN +++  I+
Sbjct: 368 VVPASEVWKAIIKSQSETGTPYMLYKDACNEKSNHKHIGTIK 409


>gi|320581724|gb|EFW95943.1| ribonucleotide reductase large subunit Rnr1 [Ogataea parapolymorpha
           DL-1]
          Length = 816

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/504 (56%), Positives = 371/504 (73%), Gaps = 2/504 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF +YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM +VE D +W L  
Sbjct: 300 RPGAFCMYLEPWHADVFEFLDLRKNHGKEETRARDLFYALWIPDLFMEKVEKDQEWCLFS 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +   GLSDS+G++F  LY +YE EG++IR+V A+KLW AIL +Q ETG P++LYKDACN
Sbjct: 360 EDQSPGLSDSYGDEFVKLYNRYEREGRYIRKVRAQKLWHAILVAQTETGNPFLLYKDACN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
           +KSNQQNLGTIK SNLC EIVEY+S +E AVCNL S+AL  ++  N  ++ ++F  L DV
Sbjct: 420 KKSNQQNLGTIKSSNLCCEIVEYSSNEETAVCNLGSLALPSFVHDNKGERKFDFKFLHDV 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K + +NL+ +IDV  YP+ EA  SN RHRPI IGVQGLAD+F ++R+PF   ESR LN 
Sbjct: 480 CKTLARNLDTVIDVGSYPLPEAEVSNKRHRPIAIGVQGLADVFFKLRMPFGSPESRKLNI 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            IFETIY+ ALE S E+A   GPY +Y GSP+S+G+LQYD W   P+D+WDW  LK KI 
Sbjct: 540 LIFETIYHAALETSAELAEIYGPYDSYAGSPISKGVLQYDFWNAKPSDMWDWEGLKAKIH 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           ++GVRNSLL+A MPTAST+QI G  E FEP TSN+YSRRVLSGEFQVVN +L+ DLV+LG
Sbjct: 600 RNGVRNSLLVALMPTASTSQIFGFTECFEPITSNMYSRRVLSGEFQVVNRYLIDDLVDLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK++++   GS+Q IE IP   K++YKTVWEI Q+ ++DMAADR  FIDQSQS+N
Sbjct: 660 LWGPEMKNEILRMEGSVQAIESIPADTKEIYKTVWEIQQRALIDMAADRAPFIDQSQSMN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M     +K++SMHF+ WK GLKTG+YYLRT+ AA+AI+FT+  ++   +++     ++
Sbjct: 720 LFMRNPTMSKLTSMHFYAWKKGLKTGIYYLRTQAAASAIKFTVTPSRFKRSISESRDTTK 779

Query: 569 EEIQADQEQAMAAMICRRDNKEDC 592
                  E      I  +DN   C
Sbjct: 780 RRKSNGNEVTEGYNIYDKDNVLAC 803



 Score =  257 bits (657), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 160/212 (75%), Gaps = 1/212 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD W   P+D+WDW  LK KI ++GVRNSLL+A MPTAST+QI G  E FEP TSN+Y
Sbjct: 576 LQYDFWNAKPSDMWDWEGLKAKIHRNGVRNSLLVALMPTASTSQIFGFTECFEPITSNMY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEFQVVN +L+ DLV+LGLW   MK++++   GS+Q IE IP   K++YKTVWE
Sbjct: 636 SRRVLSGEFQVVNRYLIDDLVDLGLWGPEMKNEILRMEGSVQAIESIPADTKEIYKTVWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+ ++DMAADR  FIDQSQS+N++M     +K++SMHF+ WK GLKTG+YYLRT+ AA
Sbjct: 696 IQQRALIDMAADRAPFIDQSQSMNLFMRNPTMSKLTSMHFYAWKKGLKTGIYYLRTQAAA 755

Query: 949 NAIQFTIDKTKMANAMA-SKDTRSQEEIQADQ 979
           +AI+FT+  ++   +++ S+DT  + +   ++
Sbjct: 756 SAIKFTVTPSRFKRSISESRDTTKRRKSNGNE 787



 Score =  127 bits (318), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF +YLEPWH D+F+FL+L+KN GKEE RARDLFY LWIPD FM +VE D +W L  
Sbjct: 300 RPGAFCMYLEPWHADVFEFLDLRKNHGKEETRARDLFYALWIPDLFMEKVEKDQEWCLFS 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
            +   GLSDS+G++F  LY +YE EG
Sbjct: 360 EDQSPGLSDSYGDEFVKLYNRYEREG 385



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/95 (53%), Positives = 67/95 (70%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  + ++   IGVQGLAD+F ++R+PF   ESR LN  IFETIY+ ALE S E+A   
Sbjct: 501 AEVSNKRHRPIAIGVQGLADVFFKLRMPFGSPESRKLNILIFETIYHAALETSAELAEIY 560

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 675
           GPY +Y GSP+S+G+LQYD W   P+D+WDW  LK
Sbjct: 561 GPYDSYAGSPISKGVLQYDFWNAKPSDMWDWEGLK 595



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   KLW AIL +Q ETG P++LYKDACN+KSNQQNL  I+
Sbjct: 391 VRAQKLWHAILVAQTETGNPFLLYKDACNKKSNQQNLGTIK 431


>gi|410075976|ref|XP_003955570.1| hypothetical protein KAFR_0B01360 [Kazachstania africana CBS 2517]
 gi|372462153|emb|CCF56435.1| hypothetical protein KAFR_0B01360 [Kazachstania africana CBS 2517]
          Length = 845

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 287/468 (61%), Positives = 372/468 (79%), Gaps = 5/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A +LEPWH D+F F+E++KN G EE+RARDLF  LWIPD FM+RV  + QW+   
Sbjct: 293 RPGAIAFFLEPWHPDVFKFIEMRKNHGDEEYRARDLFPALWIPDLFMKRVADNGQWTFFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +   GLSD +G++F++LY++YE EG+  + + A+KLW+AIL++Q ETGTP+M YKDA N
Sbjct: 353 SSEAPGLSDVYGDEFEELYERYEREGRG-KTIKAQKLWYAILEAQTETGTPFMCYKDAAN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           +KSNQ+NLGTIK SNLC EI+EY++ +E AVCNLASI L  +I  ++     TYNF KL 
Sbjct: 412 QKSNQKNLGTIKSSNLCCEILEYSNPEETAVCNLASICLPTFIEYSEDNKTSTYNFDKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            VAK++T+NLN++ID N+YPV EA+ SNMRHRPI +GVQGLAD F+ +RLPF+ +E+  L
Sbjct: 472 SVAKVITRNLNRVIDNNYYPVPEAKRSNMRHRPIALGVQGLADTFMMLRLPFESDEATKL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           NKQIFETIY+ +LEASCE+A ++G Y+T+ GSP SQGILQ DMW   P  +WDW  L++ 
Sbjct: 532 NKQIFETIYHASLEASCELAQKEGHYETFPGSPASQGILQMDMWNAEPFGMWDWETLRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I K+G+RNSL +APMPTAST+QI+G NE FEP TSN+Y RRVLSGEFQ+VN +LLRDLV+
Sbjct: 592 IVKYGIRNSLTMAPMPTASTSQIMGFNECFEPITSNMYQRRVLSGEFQIVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WDD+MK  LI  NGSIQ++  +P +LK+LYKTVWEI QK +LDMAADR  +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIQNLPNVPDELKELYKTVWEISQKKILDMAADRSIYIDQSHS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           LN+++      K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID++
Sbjct: 712 LNLFIRAPTMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQS 759



 Score =  268 bits (685), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 3/209 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW   P  +WDW  L++ I K+G+RNSL +APMPTAST+QI+G NE FEP TSN+Y
Sbjct: 570 LQMDMWNAEPFGMWDWETLRKDIVKYGIRNSLTMAPMPTASTSQIMGFNECFEPITSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQ+VN +LLRDLV+LG+WDD+MK  LI  NGSIQ++  +P +LK+LYKTVWE
Sbjct: 630 QRRVLSGEFQIVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQNLPNVPDELKELYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK +LDMAADR  +IDQS SLN+++      K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKKILDMAADRSIYIDQSHSLNLFIRAPTMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749

Query: 949 NAIQFTIDKT---KMANAMASKDTRSQEE 974
            AIQFTID++   + AN +A  +T  + E
Sbjct: 750 AAIQFTIDQSVADQAANNIAIMETLHRPE 778



 Score =  122 bits (307), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 70/93 (75%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPF+ +E+  LNKQIFETIY+ +LEASCE+A ++G Y+T+ GSP 
Sbjct: 506 ALGVQGLADTFMMLRLPFESDEATKLNKQIFETIYHASLEASCELAQKEGHYETFPGSPA 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQGILQ DMW   P  +WDW  L+   + YG++
Sbjct: 566 SQGILQMDMWNAEPFGMWDWETLRKDIVKYGIR 598



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 55/75 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A +LEPWH D+F F+E++KN G EE+RARDLF  LWIPD FM+RV  + QW+   
Sbjct: 293 RPGAIAFFLEPWHPDVFKFIEMRKNHGDEEYRARDLFPALWIPDLFMKRVADNGQWTFFS 352

Query: 61  PNACRGLSDSWGEKF 75
            +   GLSD +G++F
Sbjct: 353 SSEAPGLSDVYGDEF 367



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 48/63 (76%)

Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
           ++++ +Q  +V+  L++ +N  TG   P++S + Y+I+MKN D LNSAI+YDRD+N+N+F
Sbjct: 87  HKQTTKQFSQVVSNLHHYINPATGKHAPLVSKRVYDIVMKNKDVLNSAIVYDRDYNFNYF 146

Query: 768 GFK 770
           GFK
Sbjct: 147 GFK 149



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q ETGTP+M YKDA N+KSNQ+NL  I+
Sbjct: 387 KLWYAILEAQTETGTPFMCYKDAANQKSNQKNLGTIK 423


>gi|197322445|ref|YP_002154718.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
 gi|197130512|gb|ACH46848.1| putative ribonucleotide reductase large subunit [Feldmannia species
           virus]
          Length = 773

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 279/468 (59%), Positives = 367/468 (78%), Gaps = 4/468 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH D+  F++L+KN G +  RARDLFY LW+PD FM+RVE ++ WSL C
Sbjct: 292 RKGSFAVYLEPWHADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWSLFC 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C GLSD  G +F+DLY +YE++GK  + + ARKLW  I+D Q+ETGTPY+L+KD+ N
Sbjct: 352 PNECPGLSDVCGSRFEDLYARYESQGKARKVMDARKLWDQIVDVQVETGTPYILFKDSVN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA---DKTYNFTKLKD 267
            KSNQQ+LG IK SNLCTEIVEYTS DE+AVCNL SI L+ ++  A     +++  +L +
Sbjct: 412 AKSNQQHLGVIKSSNLCTEIVEYTSPDEIAVCNLGSINLSTFVRDAYTSTASFDLEELVN 471

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
            A  +  NLN++ID NFYPV EA NSN++HRPIGIGVQG AD  + MRLP+D  ++  LN
Sbjct: 472 FAGRMVLNLNRVIDKNFYPVPEAENSNLKHRPIGIGVQGFADALVMMRLPYDSVDAAGLN 531

Query: 328 KQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
             IFE+IYYGA++ S  +A  DG P++++ GSP+ QGI Q+D+WGV P+ L+DW AL+  
Sbjct: 532 LNIFESIYYGAMKQSVHLARSDGGPHESFRGSPLEQGIFQFDLWGVKPSGLYDWEALRAD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           + KHGV+N+LL+APMPTASTAQILGNNESFEP+TSN+Y+RRVL+GEF V+N HLLRDL  
Sbjct: 592 VIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVYNRRVLAGEFPVINKHLLRDLTS 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+W D +K+QL+  NGS+Q+I  IP+ +K LYKTVWEIPQ+ +LD AA RG FI QSQS
Sbjct: 652 LGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWEIPQRVILDHAAARGPFICQSQS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +NI+MAE +  K++SM F+GW+ GLKTGMYYLRT+P A++IQF ++K+
Sbjct: 712 MNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKADSIQFALEKS 759



 Score =  278 bits (712), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 160/190 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WGV P+ L+DW AL+  + KHGV+N+LL+APMPTASTAQILGNNESFEP+TSN+Y
Sbjct: 570 FQFDLWGVKPSGLYDWEALRADVIKHGVKNALLVAPMPTASTAQILGNNESFEPFTSNVY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVL+GEF V+N HLLRDL  LG+W D +K+QL+  NGS+Q+I  IP+ +K LYKTVWE
Sbjct: 630 NRRVLAGEFPVINKHLLRDLTSLGVWGDKVKNQLLRANGSVQNIPQIPEDIKALYKTVWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ +LD AA RG FI QSQS+NI+MAE +  K++SM F+GW+ GLKTGMYYLRT+P A
Sbjct: 690 IPQRVILDHAAARGPFICQSQSMNIHMAEPSRGKITSMLFYGWRKGLKTGMYYLRTRPKA 749

Query: 949 NAIQFTIDKT 958
           ++IQF ++K+
Sbjct: 750 DSIQFALEKS 759



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH D+  F++L+KN G +  RARDLFY LW+PD FM+RVE ++ WSL C
Sbjct: 292 RKGSFAVYLEPWHADVQAFIDLRKNHGNDLERARDLFYALWVPDLFMKRVEKNSAWSLFC 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C GLSD  G +F+DLY +YE++G
Sbjct: 352 PNECPGLSDVCGSRFEDLYARYESQG 377



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPV 651
           IGVQG AD  + MRLP+D  ++  LN  IFE+IYYGA++ S  +A  DG P++++ GSP+
Sbjct: 506 IGVQGFADALVMMRLPYDSVDAAGLNLNIFESIYYGAMKQSVHLARSDGGPHESFRGSPL 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            QGI Q+D+WGV P+ L+DW AL+   + +G+K
Sbjct: 566 EQGIFQFDLWGVKPSGLYDWEALRADVIKHGVK 598



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  I+D Q+ETGTPY+L+KD+ N KSNQQ+L VI+
Sbjct: 387 KLWDQIVDVQVETGTPYILFKDSVNAKSNQQHLGVIK 423


>gi|406707527|ref|YP_006757879.1| ribonucleoside-diphosphate reductase subunit alpha [alpha
           proteobacterium HIMB59]
 gi|406653303|gb|AFS48702.1| ribonucleoside-diphosphate reductase, alpha subunit [alpha
           proteobacterium HIMB59]
          Length = 912

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 277/479 (57%), Positives = 370/479 (77%), Gaps = 1/479 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FLEL+KNTG EEFRARDLFY LWIPD FM+RVE D +W+LM 
Sbjct: 426 RKGSFAVYLEPWHADIEAFLELRKNTGAEEFRARDLFYALWIPDLFMQRVEEDGEWTLMS 485

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            + C GLS+++G +F +LY KYE E   +++V AR L   I+++QIETG PYMLYKD+ N
Sbjct: 486 EHECPGLSNTYGSEFVELYTKYEKEMPDLKRVKARALMSKIIEAQIETGQPYMLYKDSIN 545

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+N+G IK SNLC EIVEY+ KDE AVCNLASIAL  ++   D  Y++  L  +AK
Sbjct: 546 NKSNQKNIGVIKSSNLCAEIVEYSEKDETAVCNLASIALPKFVTE-DGKYDYQNLYQIAK 604

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           + TKNL+++ID+NFYP ++ +NSN RHRPIG+G+QGLAD++ +M L +D  +++++NKQI
Sbjct: 605 LATKNLDQVIDINFYPTDKTQNSNSRHRPIGLGIQGLADVYFKMNLAYDSVQAQIINKQI 664

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALEAS E+AA  G Y T++GSP+SQG  Q+D+WGV P+++WDW  L EKI KH
Sbjct: 665 FETIYFGALEASMELAADKGAYSTFQGSPLSQGQFQFDLWGVKPSNMWDWKGLMEKIQKH 724

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTAST  ILGN E+F+  TSNIY R+ LSGEF +VN +L+++L+  GLW
Sbjct: 725 GVRNSLTTACMPTASTGIILGNTETFQVQTSNIYKRQTLSGEFLLVNRYLVKELMARGLW 784

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++DQ+I+ NGS+Q+IEG P+ LK++YKTVWE  QKTV+DMAA+R  FIDQ+QS+N++
Sbjct: 785 SKELRDQIILENGSVQNIEGFPEDLKEVYKTVWETSQKTVIDMAAERAPFIDQTQSMNLW 844

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
           +A   + K++SMH + WK GLKTGMYYLR++ A +A++ T+   K A     K+A+S E
Sbjct: 845 LATPTFGKVNSMHMYAWKKGLKTGMYYLRSRSAVDAVKVTVSSEKKAKETYVKEAQSNE 903



 Score =  254 bits (650), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 155/205 (75%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WGV P+++WDW  L EKI KHGVRNSL  A MPTAST  ILGN E+F+  TSNIY
Sbjct: 699 FQFDLWGVKPSNMWDWKGLMEKIQKHGVRNSLTTACMPTASTGIILGNTETFQVQTSNIY 758

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF +VN +L+++L+  GLW   ++DQ+I+ NGS+Q+IEG P+ LK++YKTVWE
Sbjct: 759 KRQTLSGEFLLVNRYLVKELMARGLWSKELRDQIILENGSVQNIEGFPEDLKEVYKTVWE 818

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
             QKTV+DMAA+R  FIDQ+QS+N+++A   + K++SMH + WK GLKTGMYYLR++ A 
Sbjct: 819 TSQKTVIDMAAERAPFIDQTQSMNLWLATPTFGKVNSMHMYAWKKGLKTGMYYLRSRSAV 878

Query: 949 NAIQFTIDKTKMANAMASKDTRSQE 973
           +A++ T+   K A     K+ +S E
Sbjct: 879 DAVKVTVSSEKKAKETYVKEAQSNE 903



 Score =  132 bits (333), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FLEL+KNTG EEFRARDLFY LWIPD FM+RVE D +W+LM 
Sbjct: 426 RKGSFAVYLEPWHADIEAFLELRKNTGAEEFRARDLFYALWIPDLFMQRVEEDGEWTLMS 485

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
            + C GLS+++G +F +LY KYE E
Sbjct: 486 EHECPGLSNTYGSEFVELYTKYEKE 510



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 67/82 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD++ +M L +D  +++++NKQIFETIY+GALEAS E+AA  G Y T++GSP+S
Sbjct: 636 LGIQGLADVYFKMNLAYDSVQAQIINKQIFETIYFGALEASMELAADKGAYSTFQGSPLS 695

Query: 653 QGILQYDMWGVTPTDLWDWAAL 674
           QG  Q+D+WGV P+++WDW  L
Sbjct: 696 QGQFQFDLWGVKPSNMWDWKGL 717



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  V    L   I+++QIETG PYMLYKD+ N KSNQ+N+ VI+
Sbjct: 514 LKRVKARALMSKIIEAQIETGQPYMLYKDSINNKSNQKNIGVIK 557


>gi|397604632|gb|EJK58729.1| hypothetical protein THAOC_21121 [Thalassiosira oceanica]
          Length = 966

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 285/502 (56%), Positives = 380/502 (75%), Gaps = 38/502 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWH DIFD L L+KN GKEE RAR+LFYGLW+PD FM+RVE D  WSLMC
Sbjct: 432 RPGAFAIYVEPWHADIFDVLNLRKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMC 491

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL +  GE+F+ LY+KYE+EG+  RQ+ AR+LW AILD+QIETG PY+LYKDA N
Sbjct: 492 PHECPGLGECHGEQFEKLYEKYESEGRHKRQIRARQLWAAILDAQIETGNPYLLYKDAAN 551

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-----------NPADKT 259
            KSNQQNLGTI+ SNLCTEI++YT+++EVAVCNLASI L+ ++            P D  
Sbjct: 552 GKSNQQNLGTIQSSNLCTEIIQYTNEEEVAVCNLASINLSKFVVTDRGVYGSASKPGDAY 611

Query: 260 YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFD 319
           ++  +L +VAK VT+NL+K+ID+N YPVE A+ SN RHRP+GIGV GLAD F+++ LPF 
Sbjct: 612 FDHGRLHEVAKTVTRNLDKVIDINQYPVEGAKLSNRRHRPVGIGVSGLADAFLRLGLPFA 671

Query: 320 CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV----TPT 375
            ++++ LN+ IFETIY+ ALEAS EIAA  G Y ++EGSP S G LQ+++WGV    TP+
Sbjct: 672 SDDAKELNEAIFETIYHAALEASNEIAAEKGSYSSFEGSPASNGELQFNLWGVKDDDTPS 731

Query: 376 -----------------------DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
                                  + +DW  L+++I K G+RNSLL+APMPTAST+QILG 
Sbjct: 732 QRGKRSGAAQSMKHQRYPDVVAGNGYDWDGLRQRIIKTGLRNSLLVAPMPTASTSQILGV 791

Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
           NE FEP+ +N+Y RRV +GEF VVN HL++DL ++GLW+ ++++QL+ ++GS+ +I+ IP
Sbjct: 792 NECFEPFATNLYVRRVKAGEFIVVNPHLIQDLTDMGLWNKSVRNQLMRDSGSVANIDCIP 851

Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLK 532
            +LK+LYKTVWE+  + ++DMAADRG FIDQSQSLN++ A    +++++MHF+ W+ GLK
Sbjct: 852 DRLKELYKTVWEMKMRDLIDMAADRGRFIDQSQSLNLFTAAPTVSRLTAMHFYAWRKGLK 911

Query: 533 TGMYYLRTKPAANAIQFTIDKT 554
           TG+YYLRTKPA NAIQFT+ K+
Sbjct: 912 TGIYYLRTKPAVNAIQFTVSKS 933



 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 157/201 (78%), Gaps = 3/201 (1%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V   + +DW  L+++I K G+RNSLL+APMPTAST+QILG NE FEP+ +N+Y RRV +G
Sbjct: 751 VVAGNGYDWDGLRQRIIKTGLRNSLLVAPMPTASTSQILGVNECFEPFATNLYVRRVKAG 810

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN HL++DL ++GLW+ ++++QL+ ++GS+ +I+ IP +LK+LYKTVWE+  + ++
Sbjct: 811 EFIVVNPHLIQDLTDMGLWNKSVRNQLMRDSGSVANIDCIPDRLKELYKTVWEMKMRDLI 870

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           DMAADRG FIDQSQSLN++ A    +++++MHF+ W+ GLKTG+YYLRTKPA NAIQFT+
Sbjct: 871 DMAADRGRFIDQSQSLNLFTAAPTVSRLTAMHFYAWRKGLKTGIYYLRTKPAVNAIQFTV 930

Query: 956 DKTKMANAMASKDTRSQEEIQ 976
            K+ + N   S D    E++Q
Sbjct: 931 SKS-IDN--ESSDNNGDEQVQ 948



 Score =  143 bits (360), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWH DIFD L L+KN GKEE RAR+LFYGLW+PD FM+RVE D  WSLMC
Sbjct: 432 RPGAFAIYVEPWHADIFDVLNLRKNHGKEEQRARNLFYGLWVPDLFMKRVEEDGVWSLMC 491

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL +  GE+F+ LY+KYE+EG
Sbjct: 492 PHECPGLGECHGEQFEKLYEKYESEG 517



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%)

Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
           I  +Q     A +  R ++   IGV GLAD F+++ LPF  ++++ LN+ IFETIY+ AL
Sbjct: 632 IDINQYPVEGAKLSNRRHRPVGIGVSGLADAFLRLGLPFASDDAKELNEAIFETIYHAAL 691

Query: 631 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD 667
           EAS EIAA  G Y ++EGSP S G LQ+++WGV   D
Sbjct: 692 EASNEIAAEKGSYSSFEGSPASNGELQFNLWGVKDDD 728



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AILD+QIETG PY+LYKDA N KSNQQNL  I+
Sbjct: 527 QLWAAILDAQIETGNPYLLYKDAANGKSNQQNLGTIQ 563


>gi|313768128|ref|YP_004061559.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599735|gb|ADQ91756.1| hypothetical protein BpV1_129c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 748

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 283/464 (60%), Positives = 358/464 (77%), Gaps = 3/464 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+ A+YLEPWH DI DFLE++ N G EE R RDLF  +WIPD FM+RVESD  WSL C
Sbjct: 278 RKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLFC 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G++F+DLY+KYE+EG   + VPA ++W AI+ SQ ETGTPYMLYKDACN
Sbjct: 338 PDQAKGLSDVYGKEFEDLYEKYESEGIATKVVPASEIWKAIIKSQSETGTPYMLYKDACN 397

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSN +++GTIK SNLCTEI+E+T K+E AVCNLASIAL  Y++     +N  +L  V K
Sbjct: 398 EKSNHKHVGTIKSSNLCTEILEFTDKEETAVCNLASIALPKYVDVEKNEFNHEELHRVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNK+ID NFYP E  + SNMRHRPIGIGVQGLAD+FI +R+ F   ESR LN  I
Sbjct: 458 MVTRNLNKVIDKNFYPTENGKRSNMRHRPIGIGVQGLADVFIMLRMTFGSEESRKLNIDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP--TDLWDWAALKEKIA 388
           FETIY+ +LE+SCE+A   GPY+T++GSP S+GILQ+DMW   P  +  +DW A++ K+ 
Sbjct: 518 FETIYHASLESSCELAEMYGPYETFKGSPFSKGILQFDMWDRDPKFSGRYDWNAMR-KLV 576

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G  NSLL+APMPTAST+QILGNNE FEPYT+NIY RR L+GEF VVN HL+ DL E G
Sbjct: 577 KKGTMNSLLLAPMPTASTSQILGNNECFEPYTTNIYLRRTLAGEFVVVNKHLVNDLKERG 636

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MKD ++  NGS+Q+I  IP  LK+LYKTVWE+ QKT++DMAADRG +IDQSQS+N
Sbjct: 637 LWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTVWEMSQKTIIDMAADRGVYIDQSQSMN 696

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +++     +K+SSMH + WK GLKTGMYYLR+K  +  IQF+++
Sbjct: 697 LFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKAKSRPIQFSLE 740



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 144/190 (75%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTP--TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            ++DMW   P  +  +DW A++ K+ K G  NSLL+APMPTAST+QILGNNE FEPYT+N
Sbjct: 552 LQFDMWDRDPKFSGRYDWNAMR-KLVKKGTMNSLLLAPMPTASTSQILGNNECFEPYTTN 610

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           IY RR L+GEF VVN HL+ DL E GLW   MKD ++  NGS+Q+I  IP  LK+LYKTV
Sbjct: 611 IYLRRTLAGEFVVVNKHLVNDLKERGLWSKEMKDLMVKANGSVQNIIDIPDDLKELYKTV 670

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WE+ QKT++DMAADRG +IDQSQS+N+++     +K+SSMH + WK GLKTGMYYLR+K 
Sbjct: 671 WEMSQKTIIDMAADRGVYIDQSQSMNLFVESPTISKLSSMHMYAWKTGLKTGMYYLRSKA 730

Query: 947 AANAIQFTID 956
            +  IQF+++
Sbjct: 731 KSRPIQFSLE 740



 Score =  132 bits (333), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 69/87 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+ A+YLEPWH DI DFLE++ N G EE R RDLF  +WIPD FM+RVESD  WSL C
Sbjct: 278 RKGSIAVYLEPWHADILDFLEIRLNQGDEEARCRDLFSAMWIPDLFMKRVESDGNWSLFC 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G++F+DLY+KYE+EG+
Sbjct: 338 PDQAKGLSDVYGKEFEDLYEKYESEGI 364



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+FI +R+ F   ESR LN  IFETIY+ +LE+SCE+A   GPY+T++GSP S
Sbjct: 489 IGVQGLADVFIMLRMTFGSEESRKLNIDIFETIYHASLESSCELAEMYGPYETFKGSPFS 548

Query: 653 QGILQYDMWGVTP--TDLWDWAALKVLA 678
           +GILQ+DMW   P  +  +DW A++ L 
Sbjct: 549 KGILQFDMWDRDPKFSGRYDWNAMRKLV 576



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D++G    DL++    + +A  +V   ++W AI+ SQ ETGTPYMLYKDACN KSN +++
Sbjct: 346 DVYGKEFEDLYEKYESEGIATKVVPASEIWKAIIKSQSETGTPYMLYKDACNEKSNHKHV 405

Query: 717 EVIE 720
             I+
Sbjct: 406 GTIK 409


>gi|401827749|ref|XP_003888167.1| ribonucleoside-diphosphate reductase [Encephalitozoon hellem ATCC
           50504]
 gi|392999367|gb|AFM99186.1| ribonucleoside-diphosphate reductase [Encephalitozoon hellem ATCC
           50504]
          Length = 769

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 277/481 (57%), Positives = 376/481 (78%), Gaps = 7/481 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+ AIYLEPWH +IFDFL+++KNTG E+ RARD+F  LW+ D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIYLEPWHMEIFDFLDIRKNTGPEDLRARDMFIALWVNDLFMERVKNNEEWSLFC 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
           P+   GL + WGE+F+ LY KYE   K I +  VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 347 PSQAVGLDEVWGEEFNALYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 403

Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           CNR SN Q+LGTIK SNLC EIVEY+S DE +VCNLASI+L  ++   +  ++F   + +
Sbjct: 404 CNRLSNMQHLGTIKSSNLCAEIVEYSSGDETSVCNLASISLPKFVK--NGVFDFESFRSI 461

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I+T NLN++ID ++YP+EEA+ SNMRHRPIGIGVQGLADLF  +R PF+ +E+R LNK
Sbjct: 462 VRIITINLNRVIDWSYYPIEEAKTSNMRHRPIGIGVQGLADLFAILRFPFESDEARKLNK 521

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +IFE +YY ALEASCE+A  +GP+++YEGS +S+GI  +++ G   ++ WDW  L+E+I 
Sbjct: 522 EIFEAMYYSALEASCELAEAEGPFESYEGSSISKGIFHFELAGKKASNKWDWEGLRERIK 581

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           ++G RNSLLIA MPT+ T+QI GNNE+FEPY SNIY+RR  +GEFQ+VN +L+ DLV+LG
Sbjct: 582 RYGTRNSLLIALMPTSGTSQIFGNNEAFEPYASNIYTRRTHAGEFQIVNQYLIDDLVKLG 641

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   MK+ ++ N GSIQ+I  IP K++++YKTVWEI  K+V+D+AADR AFIDQSQSLN
Sbjct: 642 LWSYEMKNLIVENEGSIQNITSIPSKIREIYKTVWEIKMKSVIDLAADRQAFIDQSQSLN 701

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           I++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  +AI+FT+DK      ++S +  + 
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSSMNYDAD 761

Query: 569 E 569
           E
Sbjct: 762 E 762



 Score =  256 bits (654), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/205 (55%), Positives = 159/205 (77%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++ G   ++ WDW  L+E+I ++G RNSLLIA MPT+ T+QI GNNE+FEPY SNIY
Sbjct: 558 FHFELAGKKASNKWDWEGLRERIKRYGTRNSLLIALMPTSGTSQIFGNNEAFEPYASNIY 617

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN +L+ DLV+LGLW   MK+ ++ N GSIQ+I  IP K++++YKTVWE
Sbjct: 618 TRRTHAGEFQIVNQYLIDDLVKLGLWSYEMKNLIVENEGSIQNITSIPSKIREIYKTVWE 677

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+V+D+AADR AFIDQSQSLNI++A+  Y++++SMHF+G+  GLKTGMYYLRT+P  
Sbjct: 678 IKMKSVIDLAADRQAFIDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 737

Query: 949 NAIQFTIDKTKMANAMASKDTRSQE 973
           +AI+FT+DK      ++S +  + E
Sbjct: 738 SAIKFTVDKKLAEKTLSSMNYDADE 762



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 65/83 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+ AIYLEPWH +IFDFL+++KNTG E+ RARD+F  LW+ D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIYLEPWHMEIFDFLDIRKNTGPEDLRARDMFIALWVNDLFMERVKNNEEWSLFC 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL + WGE+F+ LY KYE
Sbjct: 347 PSQAVGLDEVWGEEFNALYCKYE 369



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/92 (51%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLF  +R PF+ +E+R LNK+IFE +YY ALEASCE+A  +GP+++YEGS +S
Sbjct: 495 IGVQGLADLFAILRFPFESDEARKLNKEIFEAMYYSALEASCELAEAEGPFESYEGSSIS 554

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI  +++ G   ++ WDW  L+     YG +
Sbjct: 555 KGIFHFELAGKKASNKWDWEGLRERIKRYGTR 586



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           SQ +   ++WG     L+  +       +V   KLW AI+++QIETGTPYM YKDACNR 
Sbjct: 348 SQAVGLDEVWGEEFNALYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407

Query: 711 SNQQNLEVIE 720
           SN Q+L  I+
Sbjct: 408 SNMQHLGTIK 417


>gi|343474739|emb|CCD13686.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 842

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/519 (56%), Positives = 378/519 (72%), Gaps = 41/519 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DI  FL LKKNTGK++ RARDLFYGLWIPD FM RV    +W+LM 
Sbjct: 309 RKGAFAVYLEPWHADILGFLLLKKNTGKDDLRARDLFYGLWIPDLFMERVRQKEKWTLMD 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNT RGLSD +G++F DLY++YE EG+ ++ + A  LWFAIL+SQ+ETG P+MLYKDACN
Sbjct: 369 PNTARGLSDCYGDEFKDLYERYEKEGRGVKTIAAHDLWFAILESQVETGGPFMLYKDACN 428

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEI+EYTSKDE+AVCNLASIAL   I   D  ++  KL+++ K
Sbjct: 429 CKSNQKNLGTIKCSNLCTEILEYTSKDEIAVCNLASIALPRCIE--DGKFSHKKLRNITK 486

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID+N+YP+EEA+ SNMR+RP+GIGVQGLAD F  + LPF    ++ LN++I
Sbjct: 487 IVTRNLNKVIDLNYYPLEEAKRSNMRNRPVGIGVQGLADTFALLSLPFASIRAKRLNRRI 546

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------------------- 370
           FE IYY A+E S E+AA  G Y+T++ SP S+G+LQ+D+W                    
Sbjct: 547 FENIYYAAVETSVELAAEQGKYETFDKSPASEGLLQFDLWDRYVRSEAEVERYKRELEEE 606

Query: 371 ---------GVTPTD--------LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
                    G    D          DW  LK+++   G+RNSLLIAPMPTAST+QILGNN
Sbjct: 607 DRIDERNRTGGEEKDRVVDDDYERLDWEGLKKRVMSVGMRNSLLIAPMPTASTSQILGNN 666

Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
           E  EP+TSNIY RRVLSGEF VVN +L+R L+E GLW+D M++++I  NGSI  I+ IP+
Sbjct: 667 ECIEPFTSNIYVRRVLSGEFPVVNKYLVRALIEKGLWNDEMRNKIITYNGSISSIKEIPE 726

Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT 533
            +++LYK VWEI Q+ ++DMA  RG ++DQSQSLN+++ +    ++SSMHF+ W+ GLKT
Sbjct: 727 DIRELYKVVWEIRQRDLIDMAVARGRYVDQSQSLNLFLEKPTSTQLSSMHFYTWERGLKT 786

Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQ 572
           GMYYLR+KPAA+AI+FT+D  +       K  R+Q+E Q
Sbjct: 787 GMYYLRSKPAADAIKFTVDPKEKKKLEDGK--RAQQEPQ 823



 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 150/194 (77%), Gaps = 2/194 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  LK+++   G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VVN 
Sbjct: 632 DWEGLKKRVMSVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVNK 691

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+R L+E GLW+D M++++I  NGSI  I+ IP+ +++LYK VWEI Q+ ++DMA  RG
Sbjct: 692 YLVRALIEKGLWNDEMRNKIITYNGSISSIKEIPEDIRELYKVVWEIRQRDLIDMAVARG 751

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            ++DQSQSLN+++ +    ++SSMHF+ W+ GLKTGMYYLR+KPAA+AI+FT+D  +   
Sbjct: 752 RYVDQSQSLNLFLEKPTSTQLSSMHFYTWERGLKTGMYYLRSKPAADAIKFTVDPKEKKK 811

Query: 963 AMASKDTRSQEEIQ 976
               K  R+Q+E Q
Sbjct: 812 LEDGK--RAQQEPQ 823



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DI  FL LKKNTGK++ RARDLFYGLWIPD FM RV    +W+LM 
Sbjct: 309 RKGAFAVYLEPWHADILGFLLLKKNTGKDDLRARDLFYGLWIPDLFMERVRQKEKWTLMD 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  RGLSD +G++F DLY++YE EG
Sbjct: 369 PNTARGLSDCYGDEFKDLYERYEKEG 394



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLAD F  + LPF    ++ LN++IFE IYY A+E S E+AA  G Y+T++
Sbjct: 513 NRPVGIGVQGLADTFALLSLPFASIRAKRLNRRIFENIYYAAVETSVELAAEQGKYETFD 572

Query: 648 GSPVSQGILQYDMW 661
            SP S+G+LQ+D+W
Sbjct: 573 KSPASEGLLQFDLW 586



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL+SQ+ETG P+MLYKDACN KSNQ+NL  I+
Sbjct: 405 LWFAILESQVETGGPFMLYKDACNCKSNQKNLGTIK 440



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ +  + LE   E+Y   +  +G   P++S+  + ++  N + L + I Y RD  + 
Sbjct: 96  ALHKTTQGRVLEAFREMYRHNSLTSGRWAPLVSEALWRVVEANHEELENIIDYSRDLRFE 155

Query: 766 FFGFK 770
           +FGFK
Sbjct: 156 YFGFK 160


>gi|342185899|emb|CCC95384.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 842

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/519 (56%), Positives = 378/519 (72%), Gaps = 41/519 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GAFA+YLEPWH DI  FL LKKNTGK++ RARDLFYGLWIPD FM RV    +W+LM 
Sbjct: 309 RKGAFAVYLEPWHADILGFLLLKKNTGKDDLRARDLFYGLWIPDLFMERVRQKEKWTLMD 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PNT RGLSD +G++F DLY++YE EG+ ++ + A  LWFAIL+SQ+ETG P+MLYKDACN
Sbjct: 369 PNTARGLSDCYGDEFKDLYERYEMEGRGVKTIAAHDLWFAILESQVETGGPFMLYKDACN 428

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIKCSNLCTEI+EYTSKDE+AVCNLASIAL   I   D  ++  KL+++ K
Sbjct: 429 CKSNQKNLGTIKCSNLCTEILEYTSKDEIAVCNLASIALPRCIE--DGKFSHKKLRNITK 486

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVT+NLNK+ID+N+YP+EEA+ SNMR+RP+GIGVQGLAD F  + LPF    ++ LN++I
Sbjct: 487 IVTRNLNKVIDLNYYPLEEAKRSNMRNRPVGIGVQGLADTFALLSLPFASIRAKRLNRRI 546

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------------------- 370
           FE IYY A+E S E+AA  G Y+T++ SP S+G+LQ+D+W                    
Sbjct: 547 FENIYYAAVETSVELAAEQGKYETFDKSPASEGLLQFDLWDRFVRSKAEVERYKRELEEE 606

Query: 371 ---------GVTPTD--------LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
                    G    D          DW  LK+++   G+RNSLLIAPMPTAST+QILGNN
Sbjct: 607 DQIDERNRTGGEEKDRVVDDDYERLDWEGLKKRVMSVGMRNSLLIAPMPTASTSQILGNN 666

Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
           E  EP+TSNIY RRVLSGEF VVN +L+R L+E GLW+D M++++I  NGSI  I+ IP+
Sbjct: 667 ECIEPFTSNIYVRRVLSGEFPVVNKYLVRALIEKGLWNDEMRNKIITYNGSISSIKEIPE 726

Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT 533
            +++LYK VWEI Q+ ++DMA  RG ++DQSQSLN+++ +    ++SSMHF+ W+ GLKT
Sbjct: 727 DIRELYKVVWEIRQRDLIDMAVARGRYVDQSQSLNLFLEKPTSTQLSSMHFYTWERGLKT 786

Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQ 572
           GMYYLR+KPAA+AI+FT+D  +       K  R+Q+E Q
Sbjct: 787 GMYYLRSKPAADAIKFTVDPKEKKKLEDGK--RAQQEPQ 823



 Score =  239 bits (609), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 150/194 (77%), Gaps = 2/194 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  LK+++   G+RNSLLIAPMPTAST+QILGNNE  EP+TSNIY RRVLSGEF VVN 
Sbjct: 632 DWEGLKKRVMSVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVNK 691

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+R L+E GLW+D M++++I  NGSI  I+ IP+ +++LYK VWEI Q+ ++DMA  RG
Sbjct: 692 YLVRALIEKGLWNDEMRNKIITYNGSISSIKEIPEDIRELYKVVWEIRQRDLIDMAVARG 751

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            ++DQSQSLN+++ +    ++SSMHF+ W+ GLKTGMYYLR+KPAA+AI+FT+D  +   
Sbjct: 752 RYVDQSQSLNLFLEKPTSTQLSSMHFYTWERGLKTGMYYLRSKPAADAIKFTVDPKEKKK 811

Query: 963 AMASKDTRSQEEIQ 976
               K  R+Q+E Q
Sbjct: 812 LEDGK--RAQQEPQ 823



 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GAFA+YLEPWH DI  FL LKKNTGK++ RARDLFYGLWIPD FM RV    +W+LM 
Sbjct: 309 RKGAFAVYLEPWHADILGFLLLKKNTGKDDLRARDLFYGLWIPDLFMERVRQKEKWTLMD 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN  RGLSD +G++F DLY++YE EG
Sbjct: 369 PNTARGLSDCYGDEFKDLYERYEMEG 394



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 53/74 (71%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLAD F  + LPF    ++ LN++IFE IYY A+E S E+AA  G Y+T++
Sbjct: 513 NRPVGIGVQGLADTFALLSLPFASIRAKRLNRRIFENIYYAAVETSVELAAEQGKYETFD 572

Query: 648 GSPVSQGILQYDMW 661
            SP S+G+LQ+D+W
Sbjct: 573 KSPASEGLLQFDLW 586



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LWFAIL+SQ+ETG P+MLYKDACN KSNQ+NL  I+
Sbjct: 405 LWFAILESQVETGGPFMLYKDACNCKSNQKNLGTIK 440



 Score = 41.6 bits (96), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
           A ++ +  + LE   E+Y   +  +G   P++S+  + ++  N + L + I Y RD  + 
Sbjct: 96  ALHKTTQGRVLEAFREMYRHNSLTSGRWAPLVSETLWRVVEANHEELENIIDYSRDLRFE 155

Query: 766 FFGFK 770
           +FGFK
Sbjct: 156 YFGFK 160


>gi|260945435|ref|XP_002617015.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
 gi|238848869|gb|EEQ38333.1| hypothetical protein CLUG_02459 [Clavispora lusitaniae ATCC 42720]
          Length = 878

 Score =  608 bits (1568), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 278/475 (58%), Positives = 365/475 (76%), Gaps = 3/475 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWHGDI + LEL+KN G +E RARDLF+ LWIPD FM+RV+++ +WSL  
Sbjct: 301 RPGAFAIYIEPWHGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWSLFS 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +GE+F+ LY+KYE E      + ARKLW  IL +Q ETG P+MLYKDACN
Sbjct: 361 PSKAPGLSDVYGEEFESLYQKYEEEDLACTTIEARKLWMHILQAQTETGMPFMLYKDACN 420

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP---ADKTYNFTKLKD 267
           RKSNQ NLGTIK SNLC EIVEY+S +E AVCNLAS+ L  ++      +  ++F KL  
Sbjct: 421 RKSNQMNLGTIKSSNLCCEIVEYSSPEETAVCNLASLGLPTFVTANENGNVAFDFKKLHK 480

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V KI+ ++L+++IDV  YP++ A+ SN++HRPI IGVQGLAD F+++RLPFD  E+  LN
Sbjct: 481 VTKILARSLDRVIDVTKYPIKSAKVSNLKHRPIAIGVQGLADTFLELRLPFDSAEAATLN 540

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
            QIFETIY+ A+E+S E++   G Y+++EGSP S+G LQ+D+W   P    DW  LKE++
Sbjct: 541 SQIFETIYHAAIESSMELSKEKGYYESFEGSPASKGKLQFDLWNYKPDFFDDWDELKEQV 600

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            K+G+RNSLL+A MPTAST+QILG NE FEP+TSNIY+RRVLSGEFQVVN +L++DL  L
Sbjct: 601 KKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIYNRRVLSGEFQVVNKYLVKDLRAL 660

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+W+  +KD +I+NNGS+Q+I+ IPQKLK LYKTVWEI QK ++ +AA+RG FIDQSQS+
Sbjct: 661 GIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWEISQKHIVRLAAERGRFIDQSQSM 720

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           NI++    +  ++S HF  W+ GLKTGMYYLRT+ AA AIQFT+DK ++   + S
Sbjct: 721 NIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAARAIQFTVDKQEIEAKLKS 775



 Score =  256 bits (654), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 117/198 (59%), Positives = 155/198 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W   P    DW  LKE++ K+G+RNSLL+A MPTAST+QILG NE FEP+TSNIY
Sbjct: 578 LQFDLWNYKPDFFDDWDELKEQVKKYGLRNSLLVAAMPTASTSQILGFNECFEPFTSNIY 637

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN +L++DL  LG+W+  +KD +I+NNGS+Q+I+ IPQKLK LYKTVWE
Sbjct: 638 NRRVLSGEFQVVNKYLVKDLRALGIWNKAVKDMIIMNNGSVQNIDIIPQKLKKLYKTVWE 697

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++ +AA+RG FIDQSQS+NI++    +  ++S HF  W+ GLKTGMYYLRT+ AA
Sbjct: 698 ISQKHIVRLAAERGRFIDQSQSMNIHLMNPTFGTLTSCHFFAWEQGLKTGMYYLRTQAAA 757

Query: 949 NAIQFTIDKTKMANAMAS 966
            AIQFT+DK ++   + S
Sbjct: 758 RAIQFTVDKQEIEAKLKS 775



 Score =  131 bits (330), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWHGDI + LEL+KN G +E RARDLF+ LWIPD FM+RV+++ +WSL  
Sbjct: 301 RPGAFAIYIEPWHGDIMEVLELRKNHGPDELRARDLFFALWIPDLFMKRVKNNGKWSLFS 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+   GLSD +GE+F+ LY+KYE E L
Sbjct: 361 PSKAPGLSDVYGEEFESLYQKYEEEDL 387



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           +A +    ++   IGVQGLAD F+++RLPFD  E+  LN QIFETIY+ A+E+S E++  
Sbjct: 502 SAKVSNLKHRPIAIGVQGLADTFLELRLPFDSAEAATLNSQIFETIYHAAIESSMELSKE 561

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-T 698
            G Y+++EGSP S+G LQ+D+W   P    DW  LK     YGL+   ++L + + T  T
Sbjct: 562 KGYYESFEGSPASKGKLQFDLWNYKPDFFDDWDELKEQVKKYGLR--NSLLVAAMPTAST 619

Query: 699 PYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
             +L  + C     SN  N  V+   + +VNK
Sbjct: 620 SQILGFNECFEPFTSNIYNRRVLSGEFQVVNK 651



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  IL +Q ETG P+MLYKDACNRKSNQ NL  I+
Sbjct: 396 KLWMHILQAQTETGMPFMLYKDACNRKSNQMNLGTIK 432


>gi|300707604|ref|XP_002996003.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
 gi|239605258|gb|EEQ82332.1| hypothetical protein NCER_100976 [Nosema ceranae BRL01]
          Length = 800

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 277/485 (57%), Positives = 377/485 (77%), Gaps = 5/485 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G  AIYLEPWH DIFDFL+L+K+ GK+E RARD+F G+WI D FM+RVE++  WSL C
Sbjct: 309 RSGCPAIYLEPWHKDIFDFLDLRKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFC 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +  GLS+++G++F+D+Y +YE +   +  VPA+K+W AI++SQIETGTPYMLYKD  N
Sbjct: 369 PKSVPGLSNAYGKEFEDMYLEYEKKVDCV-VVPAQKVWKAIIESQIETGTPYMLYKDTIN 427

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             SNQ+N+GTI+CSNLCTEIV+YTS DEVAVCNLASI L  ++   +  ++F   K V K
Sbjct: 428 NLSNQKNIGTIRCSNLCTEIVQYTSPDEVAVCNLASICLPKFV--INGEFDFNLFKSVVK 485

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IVTKN N +ID NFYP++EA  SN +HRPIG+GVQGLAD+F+ +RLP++   +R LNK+I
Sbjct: 486 IVTKNANIVIDCNFYPLKEAEKSNKKHRPIGLGVQGLADVFLMLRLPYESEGARKLNKEI 545

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FET+Y+GALE+SCE A + GPY++Y GSP+S+GI  ++M   + T  W+W  L++KI K+
Sbjct: 546 FETLYFGALESSCEEAEKYGPYESYNGSPISKGIFHWEMANSSTTGRWNWEELRKKILKY 605

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIAPMPTA T+QI  NNE+FEP+TSNIY+RR   GEFQ+VN +L+ DL++L +W
Sbjct: 606 GVRNSLLIAPMPTAGTSQIFNNNEAFEPFTSNIYTRRTACGEFQMVNRYLMNDLIKLNMW 665

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              +K+ ++   GSIQ+I GIP+++K+LYKTVWEI  K V+D+AADR AF+DQ+QSLN++
Sbjct: 666 SPEIKNYIVEQEGSIQNISGIPEEIKELYKTVWEIKMKCVIDLAADRQAFVDQTQSLNLF 725

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
           +A+  Y  +SSMHF+GWK GLKTGMYYLRT+P  +AI+FT+D   +      K+  + EE
Sbjct: 726 VAKPTYPILSSMHFYGWKRGLKTGMYYLRTRPITSAIKFTVDLDMLKK--VEKNEATNEE 783

Query: 571 IQADQ 575
           ++ ++
Sbjct: 784 LKENE 788



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 160/211 (75%), Gaps = 2/211 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F ++M   + T  W+W  L++KI K+GVRNSLLIAPMPTA T+QI  NNE+FEP+TSNIY
Sbjct: 580 FHWEMANSSTTGRWNWEELRKKILKYGVRNSLLIAPMPTAGTSQIFNNNEAFEPFTSNIY 639

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR   GEFQ+VN +L+ DL++L +W   +K+ ++   GSIQ+I GIP+++K+LYKTVWE
Sbjct: 640 TRRTACGEFQMVNRYLMNDLIKLNMWSPEIKNYIVEQEGSIQNISGIPEEIKELYKTVWE 699

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K V+D+AADR AF+DQ+QSLN+++A+  Y  +SSMHF+GWK GLKTGMYYLRT+P  
Sbjct: 700 IKMKCVIDLAADRQAFVDQTQSLNLFVAKPTYPILSSMHFYGWKRGLKTGMYYLRTRPIT 759

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQ 979
           +AI+FT+D   +      K+  + EE++ ++
Sbjct: 760 SAIKFTVDLDMLKK--VEKNEATNEELKENE 788



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 67/83 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G  AIYLEPWH DIFDFL+L+K+ GK+E RARD+F G+WI D FM+RVE++  WSL C
Sbjct: 309 RSGCPAIYLEPWHKDIFDFLDLRKSIGKDELRARDVFTGMWINDLFMKRVEANEDWSLFC 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P +  GLS+++G++F+D+Y +YE
Sbjct: 369 PKSVPGLSNAYGKEFEDMYLEYE 391



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 69/92 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ +RLP++   +R LNK+IFET+Y+GALE+SCE A + GPY++Y GSP+S
Sbjct: 517 LGVQGLADVFLMLRLPYESEGARKLNKEIFETLYFGALESSCEEAEKYGPYESYNGSPIS 576

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI  ++M   + T  W+W  L+   L YG++
Sbjct: 577 KGIFHWEMANSSTTGRWNWEELRKKILKYGVR 608



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 31/42 (73%)

Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
            +V   K+W AI++SQIETGTPYMLYKD  N  SNQ+N+  I
Sbjct: 397 VVVPAQKVWKAIIESQIETGTPYMLYKDTINNLSNQKNIGTI 438


>gi|300706935|ref|XP_002995698.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
 gi|239604894|gb|EEQ82027.1| hypothetical protein NCER_101343 [Nosema ceranae BRL01]
          Length = 738

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 280/472 (59%), Positives = 355/472 (75%), Gaps = 3/472 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R  + AIYLEPWH DIFDFL+L+KNTG E+ RARD+F  LWI D FM RV+ + +WSL C
Sbjct: 257 RSSSMAIYLEPWHKDIFDFLDLRKNTGSEDIRARDIFTALWINDLFMERVDKNEEWSLFC 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL D WGE F+ LY KYE   K    V ARKLW AI+++QIETGTPYMLYKD CN
Sbjct: 317 PNEAKGLDDVWGEDFNKLYTKYE-RTKNRTVVKARKLWKAIIEAQIETGTPYMLYKDTCN 375

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R SNQQNLG IK SNLC EI+EY+ K+E+AVCNLAS+ L+ ++      ++F +L  + K
Sbjct: 376 RLSNQQNLGIIKSSNLCAEIIEYSDKNEIAVCNLASVCLSRFVREGK--FDFEELSKIVK 433

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++T+NLN  ID  FYPVEE + SN RHRPIGIGVQGLAD F+ MR PFD   +R LN +I
Sbjct: 434 VITRNLNNCIDSTFYPVEECKRSNFRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKI 493

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIYY ALE S E+A   GPY+T+ GSP+S+GI  +++      +L  W  L+EKI KH
Sbjct: 494 FETIYYSALEESVELAKEYGPYETFAGSPLSKGIFHFELCKKKVPNLEKWNLLREKIKKH 553

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL++PMPTAST+QI  NNE FEP+TSNIY+RR  +GEFQ+VN +LL+DL+ L LW
Sbjct: 554 GVRNSLLVSPMPTASTSQIFNNNECFEPFTSNIYTRRTHAGEFQIVNQYLLKDLINLNLW 613

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              MK+ +I   GSIQ+I+ IPQ +KDLYKT WE+  K V+D+AADR  FIDQSQSLN++
Sbjct: 614 SHEMKNLIIEYEGSIQNIKSIPQDIKDLYKTAWELKMKHVIDLAADRQLFIDQSQSLNLF 673

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           +A+  Y+K+SSMHF+ +K GLKTGMYYLRT+P  +AI+FT+D+  +   M+S
Sbjct: 674 VAQPTYSKLSSMHFYAFKSGLKTGMYYLRTRPITSAIKFTVDQKLLEKTMSS 725



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 114/198 (57%), Positives = 152/198 (76%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F +++      +L  W  L+EKI KHGVRNSLL++PMPTAST+QI  NNE FEP+TSNIY
Sbjct: 528 FHFELCKKKVPNLEKWNLLREKIKKHGVRNSLLVSPMPTASTSQIFNNNECFEPFTSNIY 587

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR  +GEFQ+VN +LL+DL+ L LW   MK+ +I   GSIQ+I+ IPQ +KDLYKT WE
Sbjct: 588 TRRTHAGEFQIVNQYLLKDLINLNLWSHEMKNLIIEYEGSIQNIKSIPQDIKDLYKTAWE 647

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K V+D+AADR  FIDQSQSLN+++A+  Y+K+SSMHF+ +K GLKTGMYYLRT+P  
Sbjct: 648 LKMKHVIDLAADRQLFIDQSQSLNLFVAQPTYSKLSSMHFYAFKSGLKTGMYYLRTRPIT 707

Query: 949 NAIQFTIDKTKMANAMAS 966
           +AI+FT+D+  +   M+S
Sbjct: 708 SAIKFTVDQKLLEKTMSS 725



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 62/83 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R  + AIYLEPWH DIFDFL+L+KNTG E+ RARD+F  LWI D FM RV+ + +WSL C
Sbjct: 257 RSSSMAIYLEPWHKDIFDFLDLRKNTGSEDIRARDIFTALWINDLFMERVDKNEEWSLFC 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN  +GL D WGE F+ LY KYE
Sbjct: 317 PNEAKGLDDVWGEDFNKLYTKYE 339



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           C+R N   +   IGVQGLAD F+ MR PFD   +R LN +IFETIYY ALE S E+A   
Sbjct: 453 CKRSNFRHRPIGIGVQGLADAFVLMRYPFDSQNARDLNFKIFETIYYSALEESVELAKEY 512

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY+T+ GSP+S+GI  +++      +L  W  L+     +G++
Sbjct: 513 GPYETFAGSPLSKGIFHFELCKKKVPNLEKWNLLREKIKKHGVR 556



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 659 DMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
           D+WG     L+  +   K   +V   KLW AI+++QIETGTPYMLYKD CNR SNQQNL 
Sbjct: 325 DVWGEDFNKLYTKYERTKNRTVVKARKLWKAIIEAQIETGTPYMLYKDTCNRLSNQQNLG 384

Query: 718 VIE 720
           +I+
Sbjct: 385 IIK 387


>gi|424046201|ref|ZP_17783764.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-03]
 gi|408885458|gb|EKM24175.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-03]
          Length = 752

 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 265/461 (57%), Positives = 355/461 (77%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKGLSDLYGTEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DTGFDFDKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G LQ+D+WG  P+  WDW+ LK +IA+H
Sbjct: 518 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQLQFDLWGEQPSSRWDWSQLKRQIAEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 638 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738



 Score =  251 bits (641), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 148/187 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WG  P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 552 LQFDLWGEQPSSRWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 672 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 340 PHNTKGLSDLYGTEFTQKYQEYERMGL 366



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G LQ+D+WG  P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 549 HGQLQFDLWGEQPSSRWDWSQLKRQIAEHGVR--NSLLIAQMPTAS 592



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|163801386|ref|ZP_02195285.1| hypothetical protein 1103602000598_AND4_10974 [Vibrio sp. AND4]
 gi|159174875|gb|EDP59675.1| hypothetical protein AND4_10974 [Vibrio sp. AND4]
          Length = 752

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 263/461 (57%), Positives = 358/461 (77%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM+RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  + LS+ +G +F+  Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKDLSELYGSEFNRKYQEYERIGLGVKTIKARQLMTKIIESQTETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASVALPKFVT--DTGFDFEKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P  +   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTNKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSKEALHLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIA + G Y +Y+GSP+SQG+ Q+D+WG  P+  WDW+ LK KIA+H
Sbjct: 518 AETMYHASLEASCEIAKQKGTYSSYDGSPISQGLFQFDLWGKQPSSRWDWSQLKLKIAEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSN+Y R+ LSGEF ++N HL+RDL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLYKRQTLSGEFIILNKHLVRDLEKNGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +++NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A+R  F+ QSQSLN++
Sbjct: 638 TSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAERAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ANA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSANAVKVTV 738



 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 152/187 (81%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WG  P+  WDW+ LK KIA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSN+Y
Sbjct: 552 FQFDLWGKQPSSRWDWSQLKLKIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNLY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+RDL + GLW   ++D +++NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIILNKHLVRDLEKNGLWTSKIRDAILLNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A+R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+A
Sbjct: 672 ISQKVIIDMSAERAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSA 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  120 bits (301), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 68/87 (78%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM+RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMQRVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  + LS+ +G +F+  Y++YE  GL
Sbjct: 340 PHNTKDLSELYGSEFNRKYQEYERIGL 366



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 77/106 (72%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIA + G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHLPFDSKEALHLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
           QG+ Q+D+WG  P+  WDW+ LK+    +G++   ++L +Q+ T +
Sbjct: 549 QGLFQFDLWGKQPSSRWDWSQLKLKIAEHGVR--NSLLIAQMPTAS 592



 Score = 56.6 bits (135), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTKIIESQTETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|424037730|ref|ZP_17776455.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-02]
 gi|408895211|gb|EKM31675.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-02]
          Length = 735

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 264/463 (57%), Positives = 354/463 (76%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 263 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 323 PHNTKGLSDLYGAEFTQKYQEYECMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 383 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DTGFDFDKLHQVTK 440

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 441 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDI 500

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G  Q+D+WG  P+  WDW+ LK +IA H
Sbjct: 501 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWGEQPSSRWDWSQLKRQIAAH 560

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 561 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 620

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 621 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 680

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+ +
Sbjct: 681 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQ 723



 Score =  253 bits (645), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/189 (57%), Positives = 149/189 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+WG  P+  WDW+ LK +IA HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 535 FQFDLWGEQPSSRWDWSQLKRQIAAHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 594

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 595 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 654

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 655 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 714

Query: 949 NAIQFTIDK 957
           NA++ T+ +
Sbjct: 715 NAVKVTVGQ 723



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 263 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 323 PHNTKGLSDLYGAEFTQKYQEYECMGL 349



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 472 LGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 531

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+WG  P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 532 HGQFQFDLWGEQPSSRWDWSQLKRQIAAHGVR--NSLLIAQMPTAS 575



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 358 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 394


>gi|215401540|ref|YP_002332844.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
 gi|209484081|gb|ACI47514.1| RR1 [Spodoptera litura nucleopolyhedrovirus II]
          Length = 904

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 271/470 (57%), Positives = 356/470 (75%), Gaps = 1/470 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A Y+EPWH +I+D L L++N G E+ +ARDL  GLWIPD FM RV+ + +WSL C
Sbjct: 416 RKGALAAYVEPWHPEIYDVLNLRRNMGSEDAKARDLMLGLWIPDLFMERVKENKEWSLFC 475

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL D +G  F+ LY+KYE    + RQV AR L+  I+++ +ETG PYMLYKD CN
Sbjct: 476 PKKYPGLLDEYGSSFEILYEKYEKNKLYERQVKARDLFRFIVETNVETGGPYMLYKDPCN 535

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           + SNQ+NLG IKCSNLC EIV+Y  KDE AVCNLASIA+N  +N   KT+++  L  + K
Sbjct: 536 KFSNQKNLGIIKCSNLCAEIVQYCDKDETAVCNLASIAVNKCVNVKTKTFDYVLLNRLTK 595

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           IV +NLNKIID N YP   A NSN +HRP+G+G+QGLAD F+ + +P+D  E+R +N  I
Sbjct: 596 IVVRNLNKIIDSNHYPTAGAANSNKKHRPVGVGIQGLADAFVLLDIPYDSEEARSVNYMI 655

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
            ETIY+ ALEASCE+A  DGPY++YE SP+ +G + YD + + PTD LW+W+ L+EKI +
Sbjct: 656 AETIYFSALEASCELAKIDGPYESYENSPLFRGTMHYDNYNIYPTDHLWNWSKLREKIQR 715

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HGVRNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+GEFQVVN +L++ LV+L +
Sbjct: 716 HGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLIKALVDLNI 775

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           +   ++++++  NGS+Q+I+ IPQ +KDL+KT WEI  K ++DMAADR  FIDQSQSLN+
Sbjct: 776 YTPELRNKILAENGSVQNIDEIPQHVKDLFKTAWEIKSKCMIDMAADRAPFIDQSQSLNL 835

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           ++AE  Y+ MSS+HF+ W+  LKTGMYYLRTKPAA A QFT+D    A+ 
Sbjct: 836 FVAEPTYSVMSSIHFYTWQKQLKTGMYYLRTKPAAQATQFTVDAEAAASC 885



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/194 (60%), Positives = 157/194 (80%), Gaps = 1/194 (0%)

Query: 771 YDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYS 829
           YD + + PTD LW+W+ L+EKI +HGVRNSLL+A MPTA+TAQILGNNESFEP+TSN+Y 
Sbjct: 692 YDNYNIYPTDHLWNWSKLREKIQRHGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYL 751

Query: 830 RRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
           RRVL+GEFQVVN +L++ LV+L ++   ++++++  NGS+Q+I+ IPQ +KDL+KT WEI
Sbjct: 752 RRVLAGEFQVVNQYLIKALVDLNIYTPELRNKILAENGSVQNIDEIPQHVKDLFKTAWEI 811

Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
             K ++DMAADR  FIDQSQSLN+++AE  Y+ MSS+HF+ W+  LKTGMYYLRTKPAA 
Sbjct: 812 KSKCMIDMAADRAPFIDQSQSLNLFVAEPTYSVMSSIHFYTWQKQLKTGMYYLRTKPAAQ 871

Query: 950 AIQFTIDKTKMANA 963
           A QFT+D    A+ 
Sbjct: 872 ATQFTVDAEAAASC 885



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A Y+EPWH +I+D L L++N G E+ +ARDL  GLWIPD FM RV+ + +WSL C
Sbjct: 416 RKGALAAYVEPWHPEIYDVLNLRRNMGSEDAKARDLMLGLWIPDLFMERVKENKEWSLFC 475

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P    GL D +G  F+ LY+KYE   L
Sbjct: 476 PKKYPGLLDEYGSSFEILYEKYEKNKL 502



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F+ + +P+D  E+R +N  I ETIY+ ALEASCE+A  DGPY++YE SP+ 
Sbjct: 627 VGIQGLADAFVLLDIPYDSEEARSVNYMIAETIYFSALEASCELAKIDGPYESYENSPLF 686

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           +G + YD + + PTD LW+W+ L+     +G++
Sbjct: 687 RGTMHYDNYNIYPTDHLWNWSKLREKIQRHGVR 719



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L+  I+++ +ETG PYMLYKD CN+ SNQ+NL +I+
Sbjct: 512 LFRFIVETNVETGGPYMLYKDPCNKFSNQKNLGIIK 547


>gi|374106763|gb|AEY95672.1| FACR155Wp [Ashbya gossypii FDAG1]
          Length = 864

 Score =  593 bits (1530), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/468 (58%), Positives = 361/468 (77%), Gaps = 7/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH D+FDFL L++N GKEE RARDLFYGLWIPD FM+RVE++ +WSL  
Sbjct: 314 RPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFS 373

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE F+ LY +YE E +  R+V A++LW  IL SQ ETG P+MLYKDACN
Sbjct: 374 PNEAVGLSDCYGEAFEQLYVRYERELEPYRRVKAQELWREILLSQTETGGPFMLYKDACN 433

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
            KSNQ+NLGTIK SNLC EIVEY+S+DEVAVCNLAS+AL  +++      T+++ +L  V
Sbjct: 434 SKSNQKNLGTIKSSNLCCEIVEYSSRDEVAVCNLASVALPTFVSVTSDAITFDYARLHSV 493

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++T+NL+K ID+  YPV EA  SN +HRP+ +GVQGLAD+F+ MR PF+  E+  +N+
Sbjct: 494 VKVMTRNLDKAIDIGDYPVPEAERSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNR 553

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW----DWAALK 384
           +IFETIY+ A+E S E+AA  G Y ++ GSP S+G LQ+D+WG    +      DW  LK
Sbjct: 554 EIFETIYHAAVETSIELAAEYGAYASFVGSPASKGELQFDLWGRNKDNYQFLYDDWDELK 613

Query: 385 EKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           EKI +  G+RNSLL+ PMPTAST+QILG  ESFEP TS IY+RRVLSGE+ +VN ++++D
Sbjct: 614 EKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPMTSMIYTRRVLSGEYTLVNKYMVQD 673

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
             +LG+W + +K+++I + GSIQ I+GIP  LKDLYKTVWE+PQ+ ++D++ADR  F+DQ
Sbjct: 674 FCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLYKTVWELPQRKLIDLSADRAPFVDQ 733

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           SQSLN+++ E    K++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+
Sbjct: 734 SQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLRTQAAANAIQFTL 781



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 149/192 (77%), Gaps = 5/192 (2%)

Query: 769 FKYDMWGVTPTDLW----DWAALKEKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823
            ++D+WG    +      DW  LKEKI +  G+RNSLL+ PMPTAST+QILG  ESFEP 
Sbjct: 590 LQFDLWGRNKDNYQFLYDDWDELKEKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPM 649

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TS IY+RRVLSGE+ +VN ++++D  +LG+W + +K+++I + GSIQ I+GIP  LKDLY
Sbjct: 650 TSMIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLY 709

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KTVWE+PQ+ ++D++ADR  F+DQSQSLN+++ E    K++SMHF+ WK GLKTGMYYLR
Sbjct: 710 KTVWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLR 769

Query: 944 TKPAANAIQFTI 955
           T+ AANAIQFT+
Sbjct: 770 TQAAANAIQFTL 781



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 74/100 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH D+FDFL L++N GKEE RARDLFYGLWIPD FM+RVE++ +WSL  
Sbjct: 314 RPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFS 373

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLE 100
           PN   GLSD +GE F+ LY +YE E   Y R  A  ++ E
Sbjct: 374 PNEAVGLSDCYGEAFEQLYVRYERELEPYRRVKAQELWRE 413



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 3/80 (3%)

Query: 586 RDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP 642
           R NK+     +GVQGLAD+F+ MR PF+  E+  +N++IFETIY+ A+E S E+AA  G 
Sbjct: 517 RSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAEYGA 576

Query: 643 YQTYEGSPVSQGILQYDMWG 662
           Y ++ GSP S+G LQ+D+WG
Sbjct: 577 YASFVGSPASKGELQFDLWG 596



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW  IL SQ ETG P+MLYKDACN KSNQ+NL  I+
Sbjct: 409 ELWREILLSQTETGGPFMLYKDACNSKSNQKNLGTIK 445


>gi|45185841|ref|NP_983557.1| ACR155Wp [Ashbya gossypii ATCC 10895]
 gi|44981631|gb|AAS51381.1| ACR155Wp [Ashbya gossypii ATCC 10895]
          Length = 864

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/468 (58%), Positives = 361/468 (77%), Gaps = 7/468 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH D+FDFL L++N GKEE RARDLFYGLWIPD FM+RVE++ +WSL  
Sbjct: 314 RPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFS 373

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE F+ LY +YE E +  R+V A++LW  IL SQ ETG P+MLYKDACN
Sbjct: 374 PNEAVGLSDCYGEAFEQLYVRYERELEPYRRVKAQELWREILLSQTETGGPFMLYKDACN 433

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
            KSNQ+NLGTIK SNLC EIVEY+S+DEVAVCNLAS+AL  +++      T+++ +L  V
Sbjct: 434 SKSNQKNLGTIKSSNLCCEIVEYSSRDEVAVCNLASVALPTFVSVTSDAITFDYARLHSV 493

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++T+NL+K ID+  YPV EA  SN +HRP+ +GVQGLAD+F+ MR PF+  E+  +N+
Sbjct: 494 VKVMTRNLDKAIDIGDYPVPEAERSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNR 553

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW----DWAALK 384
           +IFETIY+ A+E S E+AA  G Y ++ GSP S+G LQ+D+WG    +      DW  LK
Sbjct: 554 EIFETIYHAAVETSIELAAEYGVYASFVGSPASKGELQFDLWGRNKDNYQFLYDDWDELK 613

Query: 385 EKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           EKI +  G+RNSLL+ PMPTAST+QILG  ESFEP TS IY+RRVLSGE+ +VN ++++D
Sbjct: 614 EKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPMTSMIYTRRVLSGEYTLVNKYMVQD 673

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
             +LG+W + +K+++I + GSIQ I+GIP  LKDLYKTVWE+PQ+ ++D++ADR  F+DQ
Sbjct: 674 FCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLYKTVWELPQRKLIDLSADRAPFVDQ 733

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           SQSLN+++ E    K++SMHF+ WK GLKTGMYYLRT+ AANAIQFT+
Sbjct: 734 SQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLRTQAAANAIQFTL 781



 Score =  238 bits (608), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 149/192 (77%), Gaps = 5/192 (2%)

Query: 769 FKYDMWGVTPTDLW----DWAALKEKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823
            ++D+WG    +      DW  LKEKI +  G+RNSLL+ PMPTAST+QILG  ESFEP 
Sbjct: 590 LQFDLWGRNKDNYQFLYDDWDELKEKIKSGPGLRNSLLVGPMPTASTSQILGFTESFEPM 649

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TS IY+RRVLSGE+ +VN ++++D  +LG+W + +K+++I + GSIQ I+GIP  LKDLY
Sbjct: 650 TSMIYTRRVLSGEYTLVNKYMVQDFCDLGIWSEELKNRIIKDGGSIQGIDGIPPDLKDLY 709

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KTVWE+PQ+ ++D++ADR  F+DQSQSLN+++ E    K++SMHF+ WK GLKTGMYYLR
Sbjct: 710 KTVWELPQRKLIDLSADRAPFVDQSQSLNLFLKEPTMGKLTSMHFYAWKKGLKTGMYYLR 769

Query: 944 TKPAANAIQFTI 955
           T+ AANAIQFT+
Sbjct: 770 TQAAANAIQFTL 781



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/100 (62%), Positives = 74/100 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH D+FDFL L++N GKEE RARDLFYGLWIPD FM+RVE++ +WSL  
Sbjct: 314 RPGAFCIYLEPWHADVFDFLRLRRNHGKEEMRARDLFYGLWIPDLFMKRVENNGEWSLFS 373

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLE 100
           PN   GLSD +GE F+ LY +YE E   Y R  A  ++ E
Sbjct: 374 PNEAVGLSDCYGEAFEQLYVRYERELEPYRRVKAQELWRE 413



 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 3/80 (3%)

Query: 586 RDNKED---CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP 642
           R NK+     +GVQGLAD+F+ MR PF+  E+  +N++IFETIY+ A+E S E+AA  G 
Sbjct: 517 RSNKKHRPLALGVQGLADVFMLMRFPFNGEEAAQMNREIFETIYHAAVETSIELAAEYGV 576

Query: 643 YQTYEGSPVSQGILQYDMWG 662
           Y ++ GSP S+G LQ+D+WG
Sbjct: 577 YASFVGSPASKGELQFDLWG 596



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW  IL SQ ETG P+MLYKDACN KSNQ+NL  I+
Sbjct: 409 ELWREILLSQTETGGPFMLYKDACNSKSNQKNLGTIK 445


>gi|367009204|ref|XP_003679103.1| hypothetical protein TDEL_0A05600 [Torulaspora delbrueckii]
 gi|359746760|emb|CCE89892.1| hypothetical protein TDEL_0A05600 [Torulaspora delbrueckii]
          Length = 865

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 292/581 (50%), Positives = 408/581 (70%), Gaps = 42/581 (7%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA+ IYLEPWH DI DFL+L+KN GKEE RARDLF+ LWIPD FMRRVES+  W L  
Sbjct: 310 RPGAYCIYLEPWHADILDFLQLRKNHGKEEMRARDLFFALWIPDLFMRRVESNGDWCLFS 369

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D +G++FDDLY+ YE  G  ++++ A+KLW  IL SQIETG P+MLYKD+CN
Sbjct: 370 PDEAPGLCDVYGKEFDDLYEHYETNGLPMKRIKAQKLWSEILQSQIETGGPFMLYKDSCN 429

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD---KTYNFTKLKD 267
            KSNQ+NLGTI+ SNLC EI+EY+SKDE AVCNLAS+AL  ++   +     ++F KL  
Sbjct: 430 EKSNQKNLGTIRSSNLCCEIIEYSSKDETAVCNLASVALPSFVKHVEGKGSIFDFKKLHS 489

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K++T+NL+++ID+  YPVE+AR SN ++RP  IGVQGLAD+F  +++ F+  E+  LN
Sbjct: 490 VVKLITRNLDRLIDICDYPVEDARYSNEKNRPQAIGVQGLADVFFILKISFESEEASTLN 549

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW---GVTPTDLW-DWAAL 383
           +Q+FETIY+GA+EAS E+A + G Y+++EGSP S+G+LQ+D W   G     L+ DW  L
Sbjct: 550 RQVFETIYHGAVEASVELAEKLGSYRSFEGSPASKGLLQFDFWEKSGEHYEYLYNDWDQL 609

Query: 384 KEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           K+KI+K  G+RNSLL+APMPTAST+QILGN ESFEP TSN+Y+RRVLSGE+  VN +++ 
Sbjct: 610 KQKISKGTGLRNSLLVAPMPTASTSQILGNTESFEPMTSNVYTRRVLSGEYINVNRYMVE 669

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
              +LG+W++ +K+++I++NGS+Q+I+G+P  +K LYKTVWEIPQ+ ++DMA  R  FID
Sbjct: 670 HFCQLGIWNEKLKNKIIMDNGSVQNIKGLPDSIKKLYKTVWEIPQRKLIDMARARSPFID 729

Query: 503 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           QSQSLN+Y+      K++ MHFH W+ GLKTGMYYLRT+ A+ AIQFTI++    N +  
Sbjct: 730 QSQSLNLYLKAPTMGKLTGMHFHAWRQGLKTGMYYLRTQAASAAIQFTINQ---ENTLMG 786

Query: 563 KDARSQEEIQADQ---EQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNK 619
                  EI+ D+   E  M+ ++ +     +       + L+I     FD + + +   
Sbjct: 787 -------EIEIDEKKLESGMSPILGKYSENTN-------SKLYIDF---FDKDGTSI--- 826

Query: 620 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 660
              ETI     E  C+++  D  Y  ++ +PVS  I+  ++
Sbjct: 827 ---ETI-----EEECKVSTDDDVYGIHDTTPVSCNIMDREL 859



 Score =  236 bits (601), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/176 (59%), Positives = 143/176 (81%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           DW  LK+KI+K  G+RNSLL+APMPTAST+QILGN ESFEP TSN+Y+RRVLSGE+  VN
Sbjct: 605 DWDQLKQKISKGTGLRNSLLVAPMPTASTSQILGNTESFEPMTSNVYTRRVLSGEYINVN 664

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
            +++    +LG+W++ +K+++I++NGS+Q+I+G+P  +K LYKTVWEIPQ+ ++DMA  R
Sbjct: 665 RYMVEHFCQLGIWNEKLKNKIIMDNGSVQNIKGLPDSIKKLYKTVWEIPQRKLIDMARAR 724

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
             FIDQSQSLN+Y+      K++ MHFH W+ GLKTGMYYLRT+ A+ AIQFTI++
Sbjct: 725 SPFIDQSQSLNLYLKAPTMGKLTGMHFHAWRQGLKTGMYYLRTQAASAAIQFTINQ 780



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 73/106 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA+ IYLEPWH DI DFL+L+KN GKEE RARDLF+ LWIPD FMRRVES+  W L  
Sbjct: 310 RPGAYCIYLEPWHADILDFLQLRKNHGKEEMRARDLFFALWIPDLFMRRVESNGDWCLFS 369

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDI 106
           P+   GL D +G++FDDLY+ YE  GL   R  A  ++ E     I
Sbjct: 370 PDEAPGLCDVYGKEFDDLYEHYETNGLPMKRIKAQKLWSEILQSQI 415



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 58/74 (78%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLAD+F  +++ F+  E+  LN+Q+FETIY+GA+EAS E+A + G Y+++E
Sbjct: 519 NRPQAIGVQGLADVFFILKISFESEEASTLNRQVFETIYHGAVEASVELAEKLGSYRSFE 578

Query: 648 GSPVSQGILQYDMW 661
           GSP S+G+LQ+D W
Sbjct: 579 GSPASKGLLQFDFW 592



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 2/63 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLAL--VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D++G    DL++      L +  +   KLW  IL SQIETG P+MLYKD+CN KSNQ+NL
Sbjct: 378 DVYGKEFDDLYEHYETNGLPMKRIKAQKLWSEILQSQIETGGPFMLYKDSCNEKSNQKNL 437

Query: 717 EVI 719
             I
Sbjct: 438 GTI 440



 Score = 44.7 bits (104), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 32/42 (76%), Gaps = 3/42 (7%)

Query: 732 TRTP---MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           TR P   +IS + YE+ +K+ +RLNS+I+ +RDF++ +FG+K
Sbjct: 122 TRVPNKSIISPEFYEMALKHEERLNSSIVVERDFHFTYFGWK 163


>gi|22671562|gb|AAN04389.1|AF451898_94 Rr1 [Heliothis zea virus 1]
          Length = 939

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 273/475 (57%), Positives = 356/475 (74%), Gaps = 5/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLEPWH D+FDF+E++KN+G EE RARDLFY LW+PD FM+RV     WSLMC
Sbjct: 295 RPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVNDGGYWSLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD WGE+F+  Y  YE EG+++R+V AR+LW AI+ +Q+ETGTPY+LYKD  N
Sbjct: 355 PDSSPGLSDCWGEEFEAKYTAYEQEGRYVRRVDARELWKAIVTAQVETGTPYILYKDTVN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R SNQ++LGTIK SNLCTEIVEY S DE AVC LAS+ L  ++    K +N   L    +
Sbjct: 415 RNSNQRHLGTIKGSNLCTEIVEYASPDETAVCVLASVNLPKFVE--GKVFNLNLLAKTVR 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIID   YP+  A  SN +HRPIGIGVQG AD    M + ++  +S  LN+ I
Sbjct: 473 LVTRNLNKIIDNALYPIPSAAKSNFKHRPIGIGVQGYADALAMMGIAYE--DSMQLNRDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  SC++A   G Y++Y GSP S+G L +D + V  +   DW++L++ IA++
Sbjct: 531 FETIYHAALTESCQLARVHGVYESYHGSPTSRGELHFDRYSVH-SQKCDWSSLRKDIARY 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTA+T+Q+ GN ESFEP+TSN+Y RR  SGEFQ+ N HL+RDL  L LW
Sbjct: 590 GLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNVHLVRDLERLNLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+M   ++ NNGSIQ+I  IP++L+ +YKTVWEIP KT++DMAADRGA+IDQSQS N+Y
Sbjct: 650 NDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKTLIDMAADRGAYIDQSQSFNLY 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           +AE  Y++M+S+HF+ W  GLKTGMYYLRTK A NAI FT+D  + A  M+   A
Sbjct: 710 VAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPFTVDVNRCALLMSQMKA 764



 Score =  255 bits (651), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 113/183 (61%), Positives = 150/183 (81%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW++L++ IA++G+RNSLL+APMPTA+T+Q+ GN ESFEP+TSN+Y RR  SGEFQ+ N 
Sbjct: 578 DWSSLRKDIARYGLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNV 637

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+RDL  L LW+D+M   ++ NNGSIQ+I  IP++L+ +YKTVWEIP KT++DMAADRG
Sbjct: 638 HLVRDLERLNLWNDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKTLIDMAADRG 697

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
           A+IDQSQS N+Y+AE  Y++M+S+HF+ W  GLKTGMYYLRTK A NAI FT+D  + A 
Sbjct: 698 AYIDQSQSFNLYVAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPFTVDVNRCAL 757

Query: 963 AMA 965
            M+
Sbjct: 758 LMS 760



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLEPWH D+FDF+E++KN+G EE RARDLFY LW+PD FM+RV     WSLMC
Sbjct: 295 RPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVNDGGYWSLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GLSD WGE+F+  Y  YE EG
Sbjct: 355 PDSSPGLSDCWGEEFEAKYTAYEQEG 380



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 5/114 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD    M + ++  +S  LN+ IFETIY+ AL  SC++A   G Y++Y GSP S
Sbjct: 504 IGVQGYADALAMMGIAYE--DSMQLNRDIFETIYHAALTESCQLARVHGVYESYHGSPTS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           +G L +D + V  +   DW++L+     YGL+   ++L + + T T   ++ +A
Sbjct: 562 RGELHFDRYSVH-SQKCDWSSLRKDIARYGLR--NSLLVAPMPTATTSQVFGNA 612



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AI+ +Q+ETGTPY+LYKD  NR SNQ++L  I+
Sbjct: 390 ELWKAIVTAQVETGTPYILYKDTVNRNSNQRHLGTIK 426


>gi|350532635|ref|ZP_08911576.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           rotiferianus DAT722]
          Length = 752

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 263/461 (57%), Positives = 353/461 (76%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DTGFDFDKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +IA+H
Sbjct: 518 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQPSSRWDWSQLKRQIAEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 638 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738



 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 148/187 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 552 FQFDLWDEQPSSRWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 672 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGL 366



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 549 HGQFQFDLWDEQPSSRWDWSQLKRQIAEHGVR--NSLLIAQMPTAS 592



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|269963258|ref|ZP_06177591.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832006|gb|EEZ86132.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 752

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 263/461 (57%), Positives = 353/461 (76%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DSGFDFDKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +IA+H
Sbjct: 518 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQPSSRWDWSQLKRQIAEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 638 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738



 Score =  250 bits (638), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 148/187 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 552 FQFDLWDEQPSSRWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 672 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGL 366



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 549 HGQFQFDLWDEQPSSRWDWSQLKRQIAEHGVR--NSLLIAQMPTAS 592



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|363756368|ref|XP_003648400.1| hypothetical protein Ecym_8305 [Eremothecium cymbalariae
           DBVPG#7215]
 gi|356891600|gb|AET41583.1| Hypothetical protein Ecym_8305 [Eremothecium cymbalariae
           DBVPG#7215]
          Length = 870

 Score =  592 bits (1527), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/470 (57%), Positives = 364/470 (77%), Gaps = 7/470 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH DIFDFL+++KN G EE RARDLFYGLWIPD FMRRVE +  WSL  
Sbjct: 313 RPGAFCIYLEPWHSDIFDFLQMRKNHGNEEMRARDLFYGLWIPDLFMRRVEENKDWSLFS 372

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++FD+LY+ YE E   +++V A+K+W  IL SQ ETG P+MLYKDACN
Sbjct: 373 PDEAPGLSDCYGKEFDELYESYERELVPMKRVKAQKVWREILQSQTETGGPFMLYKDACN 432

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY--INPADKTYNFTKLKDV 268
           +KSNQ+NLGTI+ SNLC EI+EY+S +E AVCNLAS+AL  +  ++ +  ++++ KL  V
Sbjct: 433 QKSNQKNLGTIRSSNLCCEIIEYSSPEETAVCNLASVALPTFVIVSGSKISFDYAKLHSV 492

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++TKNL+++IDV  YPV EA  SN ++RP+ IGVQG AD  + +R PFD  E+  LN 
Sbjct: 493 VKVITKNLDRVIDVCDYPVPEAEKSNKKNRPMAIGVQGFADTLMMLRFPFDSKEAARLNV 552

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----LWDWAALK 384
            +FETIY+ A+EAS E+A + G Y+++ GSP SQG+LQ+D+WG+   +      DW  LK
Sbjct: 553 NVFETIYHAAIEASVELAKKYGHYESFPGSPASQGLLQFDLWGLNKENHNFLYSDWDKLK 612

Query: 385 EKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           E+I +  G+RNSLL+ PMPTAST+QILG  ESFEP TS IY+RRVLSGE+ ++N ++++D
Sbjct: 613 EQITSGAGLRNSLLVGPMPTASTSQILGFTESFEPMTSMIYTRRVLSGEYTIINKYMVQD 672

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
              LG+WD+ +K+++I++NGSIQ IEGIPQ LKDLYKTVWE+PQK ++D++ DR  FIDQ
Sbjct: 673 FCTLGIWDEKLKNRIILDNGSIQSIEGIPQHLKDLYKTVWELPQKRLVDLSRDRAPFIDQ 732

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           SQSLN+++ E    K++SMHF+ WK GLKTGMYYLRT+ A++AI+FTI +
Sbjct: 733 SQSLNLFLKEPTMGKLTSMHFYSWKKGLKTGMYYLRTQAASSAIKFTISE 782



 Score =  243 bits (620), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 153/194 (78%), Gaps = 5/194 (2%)

Query: 769 FKYDMWGVTPTD----LWDWAALKEKI-AKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823
            ++D+WG+   +      DW  LKE+I +  G+RNSLL+ PMPTAST+QILG  ESFEP 
Sbjct: 589 LQFDLWGLNKENHNFLYSDWDKLKEQITSGAGLRNSLLVGPMPTASTSQILGFTESFEPM 648

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TS IY+RRVLSGE+ ++N ++++D   LG+WD+ +K+++I++NGSIQ IEGIPQ LKDLY
Sbjct: 649 TSMIYTRRVLSGEYTIINKYMVQDFCTLGIWDEKLKNRIILDNGSIQSIEGIPQHLKDLY 708

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KTVWE+PQK ++D++ DR  FIDQSQSLN+++ E    K++SMHF+ WK GLKTGMYYLR
Sbjct: 709 KTVWELPQKRLVDLSRDRAPFIDQSQSLNLFLKEPTMGKLTSMHFYSWKKGLKTGMYYLR 768

Query: 944 TKPAANAIQFTIDK 957
           T+ A++AI+FTI +
Sbjct: 769 TQAASSAIKFTISE 782



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH DIFDFL+++KN G EE RARDLFYGLWIPD FMRRVE +  WSL  
Sbjct: 313 RPGAFCIYLEPWHSDIFDFLQMRKNHGNEEMRARDLFYGLWIPDLFMRRVEENKDWSLFS 372

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GLSD +G++FD+LY+ YE E
Sbjct: 373 PDEAPGLSDCYGKEFDELYESYERE 397



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 4/94 (4%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           + N+   IGVQG AD  + +R PFD  E+  LN  +FETIY+ A+EAS E+A + G Y++
Sbjct: 519 KKNRPMAIGVQGFADTLMMLRFPFDSKEAARLNVNVFETIYHAAIEASVELAKKYGHYES 578

Query: 646 YEGSPVSQGILQYDMWGVTPTD----LWDWAALK 675
           + GSP SQG+LQ+D+WG+   +      DW  LK
Sbjct: 579 FPGSPASQGLLQFDLWGLNKENHNFLYSDWDKLK 612



 Score = 57.4 bits (137), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   K+W  IL SQ ETG P+MLYKDACN+KSNQ+NL  I
Sbjct: 404 VKAQKVWREILQSQTETGGPFMLYKDACNQKSNQKNLGTI 443



 Score = 39.7 bits (91), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 16/36 (44%), Positives = 27/36 (75%)

Query: 735 PMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           P+IS + YE+ MK+ D +N AI   RD+++++FG+K
Sbjct: 132 PLISKEFYEMAMKHKDIINEAIDSSRDYHFSYFGWK 167


>gi|68304287|ref|YP_249755.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
 gi|67973116|gb|AAY84082.1| RR1 [Chrysodeixis chalcites nucleopolyhedrovirus]
          Length = 780

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 268/469 (57%), Positives = 359/469 (76%), Gaps = 1/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +Y+EPWH D+F FL+LK+N G E+ +ARDL + +W PD FM+RV++  +WSLMC
Sbjct: 291 RKGAMTVYIEPWHADVFTFLDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGKWSLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +G++F+DLY+ YEAEGKF +Q+ A  L   I+++Q+ETG PYM++KD  N
Sbjct: 351 PDECPGLNDCYGQEFEDLYENYEAEGKFKKQISALDLHRKIIETQVETGAPYMMFKDHVN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+NQ+N G I+ SNLC EIV+Y+   E AVCNLASIA+N + N   K+++F  L +V++
Sbjct: 411 NKNNQKNEGVIRNSNLCAEIVQYSDNRETAVCNLASIAVNNFANKQFKSFDFKSLYNVSR 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLNKIID+NFYP+  A+ SN RHRPIGIG+QGLAD F  + +P+D  E+R LNK+I
Sbjct: 471 VVTNNLNKIIDLNFYPLASAQASNFRHRPIGIGIQGLADTFAILDMPYDSQEARDLNKKI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT-DLWDWAALKEKIAK 389
            ETIYYGAL  S E+A   G Y +Y+GSP S G+LQ+D+W +  + DLW+W  LK ++A 
Sbjct: 531 SETIYYGALSQSIELAKLHGTYDSYDGSPASCGLLQFDLWNINQSNDLWNWDELKREMAM 590

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLLIA MPTA+TAQILGNNESFEP+TSN+Y RRVLSGE+QVVN HL+  LV+  +
Sbjct: 591 HGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQVVNQHLVDKLVDTNV 650

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           +  ++  ++I NNGS+Q+I+ IP  +K L+KT WEI QK VLDMAA+RG +IDQSQSLN+
Sbjct: 651 YSTDIMIKIIKNNGSVQNIDEIPHNIKALFKTAWEIKQKVVLDMAAERGPYIDQSQSLNL 710

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           ++A   Y  +SS+H + W+ GLKTGMYYLRTKPAAN IQFT+  +   N
Sbjct: 711 FVANPTYKVLSSIHDYSWEKGLKTGMYYLRTKPAANTIQFTVPSSSAIN 759



 Score =  248 bits (634), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/195 (58%), Positives = 152/195 (77%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPT-DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W +  + DLW+W  LK ++A HG+RNSLLIA MPTA+TAQILGNNESFEP+TSN+
Sbjct: 565 LQFDLWNINQSNDLWNWDELKREMAMHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNL 624

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGE+QVVN HL+  LV+  ++  ++  ++I NNGS+Q+I+ IP  +K L+KT W
Sbjct: 625 YVRRVLSGEYQVVNQHLVDKLVDTNVYSTDIMIKIIKNNGSVQNIDEIPHNIKALFKTAW 684

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK VLDMAA+RG +IDQSQSLN+++A   Y  +SS+H + W+ GLKTGMYYLRTKPA
Sbjct: 685 EIKQKVVLDMAAERGPYIDQSQSLNLFVANPTYKVLSSIHDYSWEKGLKTGMYYLRTKPA 744

Query: 948 ANAIQFTIDKTKMAN 962
           AN IQFT+  +   N
Sbjct: 745 ANTIQFTVPSSSAIN 759



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +Y+EPWH D+F FL+LK+N G E+ +ARDL + +W PD FM+RV++  +WSLMC
Sbjct: 291 RKGAMTVYIEPWHADVFTFLDLKRNMGAEDMKARDLLFAMWTPDLFMKRVKTGGKWSLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +G++F+DLY+ YEAEG
Sbjct: 351 PDECPGLNDCYGQEFEDLYENYEAEG 376



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F  + +P+D  E+R LNK+I ETIYYGAL  S E+A   G Y +Y+GSP S
Sbjct: 502 IGIQGLADTFAILDMPYDSQEARDLNKKISETIYYGALSQSIELAKLHGTYDSYDGSPAS 561

Query: 653 QGILQYDMWGVTPT-DLWDWAALKVLALVYGLK 684
            G+LQ+D+W +  + DLW+W  LK    ++GL+
Sbjct: 562 CGLLQFDLWNINQSNDLWNWDELKREMAMHGLR 594



 Score = 45.1 bits (105), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 659 DMWGVTPTDLWD--WAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D +G    DL++   A  K    +  L L   I+++Q+ETG PYM++KD  N K+NQ+N 
Sbjct: 359 DCYGQEFEDLYENYEAEGKFKKQISALDLHRKIIETQVETGAPYMMFKDHVNNKNNQKNE 418

Query: 717 EVI 719
            VI
Sbjct: 419 GVI 421


>gi|444425041|ref|ZP_21220489.1| ribonucleoside-diphosphate reductase subunit alpha [Vibrio
           campbellii CAIM 519 = NBRC 15631]
 gi|444241651|gb|ELU53172.1| ribonucleoside-diphosphate reductase subunit alpha [Vibrio
           campbellii CAIM 519 = NBRC 15631]
          Length = 752

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 262/461 (56%), Positives = 352/461 (76%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DAGFDFDKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M  PFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHFPFDSEEALQLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +IA+H
Sbjct: 518 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQPSSRWDWSQLKRQIAEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 638 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738



 Score =  250 bits (639), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 108/187 (57%), Positives = 148/187 (79%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 552 FQFDLWDEQPSSRWDWSQLKRQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 672 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGL 366



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 73/106 (68%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M  PFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHFPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 549 HGQFQFDLWDEQPSSRWDWSQLKRQIAEHGVR--NSLLIAQMPTAS 592



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|370702993|ref|YP_004956795.1| orf47 gene product [Helicoverpa zea nudivirus 2]
 gi|365199590|gb|AEW69596.1| ribonuclease reductase [Helicoverpa zea nudivirus 2]
          Length = 938

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/475 (57%), Positives = 355/475 (74%), Gaps = 5/475 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+YLEPWH D+FDF+E++KN+G EE RARDLFY LW+PD FM+RV     WSLMC
Sbjct: 295 RPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVNDGGYWSLMC 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P++  GLSD WGE+F+  Y  YE EG+++R+V AR+LW AI+ +Q+ETGTPY+LYKD  N
Sbjct: 355 PDSSPGLSDCWGEEFEAKYTAYEQEGRYVRRVDARELWKAIVTAQVETGTPYILYKDTVN 414

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R SNQ++LGTIK SNLCTEIVEY S DE AVC LAS+ L  ++    K +N   L    +
Sbjct: 415 RNSNQRHLGTIKGSNLCTEIVEYASPDETAVCVLASVNLPKFVE--GKVFNLNLLAKTVR 472

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT+NLNKIID   YP+  A  SN +HRPIGIGVQG AD    M + ++  +S  LN+ I
Sbjct: 473 LVTRNLNKIIDNALYPIPSAAKSNFKHRPIGIGVQGYADALAMMGIAYE--DSMQLNRDI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL  SC++A   G Y++Y GSP S+G L +D + V  +   DW++L++ IA++
Sbjct: 531 FETIYHAALTESCQLARVHGVYESYHGSPTSRGELHFDRYSVH-SQKCDWSSLRKDIARY 589

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+APMPTA+T+Q+ GN ESFEP+TSN+Y RR  SGEFQ+ N HL+RDL  L LW
Sbjct: 590 GLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNVHLVRDLERLNLW 649

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           +D+M   ++ NNGSIQ+I  IP++L+ +YKTVWEIP KT++DMAADRG +IDQSQS N+Y
Sbjct: 650 NDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKTLIDMAADRGVYIDQSQSFNLY 709

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           +AE  Y++M+S+HF+ W  GLKTGMYYLRTK A NAI FT+D  + A  M+   A
Sbjct: 710 VAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPFTVDVNRCALLMSQMKA 764



 Score =  253 bits (647), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 112/183 (61%), Positives = 149/183 (81%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW++L++ IA++G+RNSLL+APMPTA+T+Q+ GN ESFEP+TSN+Y RR  SGEFQ+ N 
Sbjct: 578 DWSSLRKDIARYGLRNSLLVAPMPTATTSQVFGNAESFEPFTSNMYQRRTQSGEFQLTNV 637

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+RDL  L LW+D+M   ++ NNGSIQ+I  IP++L+ +YKTVWEIP KT++DMAADRG
Sbjct: 638 HLVRDLERLNLWNDDMAQLIMYNNGSIQNITIIPEELRRIYKTVWEIPTKTLIDMAADRG 697

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQSQS N+Y+AE  Y++M+S+HF+ W  GLKTGMYYLRTK A NAI FT+D  + A 
Sbjct: 698 VYIDQSQSFNLYVAEPTYSRMTSIHFYAWNKGLKTGMYYLRTKSATNAIPFTVDVNRCAL 757

Query: 963 AMA 965
            M+
Sbjct: 758 LMS 760



 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+YLEPWH D+FDF+E++KN+G EE RARDLFY LW+PD FM+RV     WSLMC
Sbjct: 295 RPGAIAVYLEPWHADVFDFIEMRKNSGFEEARARDLFYALWVPDLFMKRVNDGGYWSLMC 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P++  GLSD WGE+F+  Y  YE EG
Sbjct: 355 PDSSPGLSDCWGEEFEAKYTAYEQEG 380



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 68/114 (59%), Gaps = 5/114 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQG AD    M + ++  +S  LN+ IFETIY+ AL  SC++A   G Y++Y GSP S
Sbjct: 504 IGVQGYADALAMMGIAYE--DSMQLNRDIFETIYHAALTESCQLARVHGVYESYHGSPTS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           +G L +D + V  +   DW++L+     YGL+   ++L + + T T   ++ +A
Sbjct: 562 RGELHFDRYSVH-SQKCDWSSLRKDIARYGLR--NSLLVAPMPTATTSQVFGNA 612



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW AI+ +Q+ETGTPY+LYKD  NR SNQ++L  I+
Sbjct: 390 ELWKAIVTAQVETGTPYILYKDTVNRNSNQRHLGTIK 426


>gi|424032642|ref|ZP_17772059.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-01]
 gi|408875700|gb|EKM14844.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           cholerae HENC-01]
          Length = 752

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 262/461 (56%), Positives = 352/461 (76%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   D  ++F KL  V K
Sbjct: 400 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASMALPKFVT--DTGFDFDKLHQVTK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+  LN+ I
Sbjct: 458 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALQLNRDI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +I +H
Sbjct: 518 AETMYHASLEASCEIAAQKGAYSSYDGSPISHGQFQFDLWDEQPSSRWDWSQLKRQIVEH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N HL+ DL + GLW
Sbjct: 578 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKHLVSDLEQRGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 638 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTV 738



 Score =  248 bits (634), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 107/187 (57%), Positives = 147/187 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +I +HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 552 FQFDLWDEQPSSRWDWSQLKRQIVEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N HL+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 612 KRQTLSGEFIIINKHLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 672 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 280 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVENDAEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 340 PHNTKGLSDLYGAEFTQKYQEYERMGL 366



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+  LN+ I ET+Y+ +LEASCEIAA+ G Y +Y+GSP+S
Sbjct: 489 LGIQGLADVFFKMHLPFDSEEALQLNRDIAETMYHASLEASCEIAAQKGAYSSYDGSPIS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK   + +G++   ++L +Q+ T +
Sbjct: 549 HGQFQFDLWDEQPSSRWDWSQLKRQIVEHGVR--NSLLIAQMPTAS 592



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 375 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 411


>gi|401665770|gb|AFP95882.1| ribonucleotide reductase large subunit [Mamestra brassicae MNPV]
          Length = 676

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/464 (59%), Positives = 351/464 (75%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 198 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 257

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L+D++G+ F+  YK YE +G+F  Q+PA  L   I++ Q ETGTPYMLYKDACN
Sbjct: 258 PNECPKLNDTYGDDFEYWYKHYEDKGQFREQMPAVTLMRNIIEIQAETGTPYMLYKDACN 317

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ N G IKCSNLC EIV+Y + DE AVCNLASIA+N YIN  + T++F  L  V K
Sbjct: 318 RKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIN--NDTFDFQLLHTVVK 375

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V  +LNKIID NFYP+E A+ SNMRHRPIGIG+QGLAD F+ +R+P+  + + LLNKQI
Sbjct: 376 HVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVLLNKQI 435

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ ALEAS E+A+   PY T+ GS  S+GILQYD+W   PT LWDW+ LK  I K+
Sbjct: 436 AETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVPTSLWDWSQLKINIQKY 495

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++ RRVLSGEFQVVN +L+ DL++L L+
Sbjct: 496 GLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQVVNRYLVDDLIKLNLY 555

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ---KTVLDMAADRGAFIDQSQSL 507
            ++M+  ++ N GSI  I  IP  LK LY T+WEI +   K +++MAADRGAFIDQSQS 
Sbjct: 556 TNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIEMAADRGAFIDQSQSF 615

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N+YMA    +KM+S+H +GWK GLKTGMYYLRT PAAN+ QFT+
Sbjct: 616 NVYMANPTLSKMASVHMYGWKRGLKTGMYYLRTLPAANSQQFTV 659



 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 115/190 (60%), Positives = 147/190 (77%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT LWDW+ LK  I K+G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++
Sbjct: 470 LQYDLWNTVPTSLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLF 529

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +L+ DL++L L+ ++M+  ++ N GSI  I  IP  LK LY T+WE
Sbjct: 530 LRRVLSGEFQVVNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWE 589

Query: 889 IPQ---KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I +   K +++MAADRGAFIDQSQS N+YMA    +KM+S+H +GWK GLKTGMYYLRT 
Sbjct: 590 IWENNGKYMIEMAADRGAFIDQSQSFNVYMANPTLSKMASVHMYGWKRGLKTGMYYLRTL 649

Query: 946 PAANAIQFTI 955
           PAAN+ QFT+
Sbjct: 650 PAANSQQFTV 659



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P+  + + LLNKQI ET+Y+ ALEAS E+A+   PY T+ GS  S
Sbjct: 407 IGIQGLADAFVMLRIPYVSDAAVLLNKQIAETVYHAALEASYELASVSEPYSTFAGSKAS 466

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYD+W   PT LWDW+ LK+    YGL+
Sbjct: 467 EGILQYDLWNTVPTSLWDWSQLKINIQKYGLR 498



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 8/125 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 198 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 257

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C  L+D++G+ F+  YK YE +G   FR    A+ L      + + +E++  TG   
Sbjct: 258 PNECPKLNDTYGDDFEYWYKHYEDKG--QFREQMPAVTL------MRNIIEIQAETGTPY 309

Query: 121 FRARD 125
              +D
Sbjct: 310 MLYKD 314



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 27/32 (84%)

Query: 689 ILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           I++ Q ETGTPYMLYKDACNRKSNQ N  +I+
Sbjct: 298 IIEIQAETGTPYMLYKDACNRKSNQSNCGLIK 329


>gi|387866126|ref|YP_003358255.2| ribonucleotide reductase subunit 1 [Anguillid herpesvirus 1]
 gi|387866034|gb|ADA57879.2| ribonucleotide reductase subunit 1 [Anguillid herpesvirus 1]
          Length = 889

 Score =  590 bits (1521), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 271/493 (54%), Positives = 363/493 (73%), Gaps = 27/493 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A++LEPWH DI  +L+LKKN G +  RARDLFYGLWI D FM RV+ D  WSLMC
Sbjct: 291 RPGAMAVWLEPWHADIAAWLDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQMWSLMC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL D +G  F  LY KYE++G +++QV AR+LW  IL SQ+E G P+M+YKD+CN
Sbjct: 351 PKKCPGLMDVYGSDFVALYTKYESQGMYVKQVEARELWTHILRSQMENGMPFMMYKDSCN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----------------- 253
           RKSNQQ++G +KC NLCTEIVE +     AVCNLA++ L   +                 
Sbjct: 411 RKSNQQHVGVVKCGNLCTEIVEVSEPHRPAVCNLAAVCLPTCVACECGIRQASRTEVASS 470

Query: 254 ---------NP-ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303
                    +P   K+++F +L  + +++ KNLN++ID + Y  + A + N + RP+GIG
Sbjct: 471 ASSAVQACEDPTCRKSFDFGELGRLTEVLVKNLNRVIDKSDYAFDGANHRNSQDRPLGIG 530

Query: 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG 363
           VQGLAD+F  + L FD  E+  LN QIFET+YY A+ ASC++A  D PY TY+GSPVSQG
Sbjct: 531 VQGLADVFAMLGLAFDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYPTYKGSPVSQG 590

Query: 364 ILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 423
           I Q+DMWGV P+ + DW +LK ++ K+GVRNSLL+APMPTASTAQI GNNE+FEP+T+N+
Sbjct: 591 IFQFDMWGVKPSAMHDWTSLKRRVQKYGVRNSLLLAPMPTASTAQIFGNNEAFEPFTNNL 650

Query: 424 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 483
           ++R VLSG+FQ++N HL+R+L+ LG+W +  + +L+ +NGSI+  E +PQ  +D++KTVW
Sbjct: 651 FTRGVLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNGSIRTWEDVPQHTRDVFKTVW 710

Query: 484 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543
           EI QKT+++MAADR  FIDQSQSLNI+MA+ N +K+SSMH +GW+ GLKTGMYYLR++PA
Sbjct: 711 EISQKTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMHMYGWQKGLKTGMYYLRSRPA 770

Query: 544 ANAIQFTIDKTKM 556
            NAIQFT+DKTK+
Sbjct: 771 VNAIQFTVDKTKV 783



 Score =  278 bits (712), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 119/192 (61%), Positives = 164/192 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMWGV P+ + DW +LK ++ K+GVRNSLL+APMPTASTAQI GNNE+FEP+T+N++
Sbjct: 592 FQFDMWGVKPSAMHDWTSLKRRVQKYGVRNSLLLAPMPTASTAQIFGNNEAFEPFTNNLF 651

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +R VLSG+FQ++N HL+R+L+ LG+W +  + +L+ +NGSI+  E +PQ  +D++KTVWE
Sbjct: 652 TRGVLSGDFQIINPHLVRELIRLGMWGEETRMRLMADNGSIRTWEDVPQHTRDVFKTVWE 711

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QKT+++MAADR  FIDQSQSLNI+MA+ N +K+SSMH +GW+ GLKTGMYYLR++PA 
Sbjct: 712 ISQKTIINMAADRAPFIDQSQSLNIHMADPNVSKLSSMHMYGWQKGLKTGMYYLRSRPAV 771

Query: 949 NAIQFTIDKTKM 960
           NAIQFT+DKTK+
Sbjct: 772 NAIQFTVDKTKV 783



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 63/87 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A++LEPWH DI  +L+LKKN G +  RARDLFYGLWI D FM RV+ D  WSLMC
Sbjct: 291 RPGAMAVWLEPWHADIAAWLDLKKNLGDDGIRARDLFYGLWISDLFMERVKDDQMWSLMC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P  C GL D +G  F  LY KYE++G+
Sbjct: 351 PKKCPGLMDVYGSDFVALYTKYESQGM 377



 Score =  117 bits (292), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F  + L FD  E+  LN QIFET+YY A+ ASC++A  D PY TY+GSPVS
Sbjct: 529 IGVQGLADVFAMLGLAFDGTEAARLNVQIFETMYYHAMAASCKLAEEDQPYPTYKGSPVS 588

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGI Q+DMWGV P+ + DW +LK     YG++
Sbjct: 589 QGIFQFDMWGVKPSAMHDWTSLKRRVQKYGVR 620



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V   +LW  IL SQ+E G P+M+YKD+CNRKSNQQ++ V++
Sbjct: 382 VEARELWTHILRSQMENGMPFMMYKDSCNRKSNQQHVGVVK 422


>gi|215401394|ref|YP_002332698.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
 gi|198448894|gb|ACH88684.1| ribonucleotide reductase large subunit [Helicoverpa armigera
           multiple nucleopolyhedrovirus]
          Length = 761

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/464 (59%), Positives = 349/464 (75%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L+D++G+ F+  YK YE +G+F  Q+PA  L   I++ Q ETGTPYMLYKDACN
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKGQFREQMPAVTLMRNIIEIQAETGTPYMLYKDACN 402

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ N G IKCSNLC EIV+Y + DE AVCNLASIA+N YIN  + T++F  L  V K
Sbjct: 403 RKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIN--NDTFDFQLLHTVVK 460

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V  +LNKIID NFYP+E A+ SNMRHRPIGIG+QGLAD F+ +R+P+  + + LLNKQI
Sbjct: 461 HVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVLLNKQI 520

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ ALEAS E+A+   PY T+ GS  S+GILQYD+W   PT LWDW+ LK  I K+
Sbjct: 521 AETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVPTSLWDWSQLKMNIQKY 580

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++ RRVLSGEFQVVN +L+ DL++L L+
Sbjct: 581 GLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQVVNRYLVDDLIKLNLY 640

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ---KTVLDMAADRGAFIDQSQSL 507
            ++M+  ++ N GSI  I  IP  LK LY T+WEI +   K +++MAADRGAFIDQSQS 
Sbjct: 641 TNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIEMAADRGAFIDQSQSF 700

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N+YMA     KM+S+H +GWK GLKTGMYY RT PAAN+ QFT+
Sbjct: 701 NVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV 744



 Score =  244 bits (622), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT LWDW+ LK  I K+G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++
Sbjct: 555 LQYDLWNTVPTSLWDWSQLKMNIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLF 614

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +L+ DL++L L+ ++M+  ++ N GSI  I  IP  LK LY T+WE
Sbjct: 615 LRRVLSGEFQVVNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWE 674

Query: 889 IPQ---KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I +   K +++MAADRGAFIDQSQS N+YMA     KM+S+H +GWK GLKTGMYY RT 
Sbjct: 675 IWENNGKYMIEMAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTL 734

Query: 946 PAANAIQFTI 955
           PAAN+ QFT+
Sbjct: 735 PAANSQQFTV 744



 Score =  114 bits (285), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P+  + + LLNKQI ET+Y+ ALEAS E+A+   PY T+ GS  S
Sbjct: 492 IGIQGLADAFVMLRIPYVSDAAVLLNKQIAETVYHAALEASYELASVSEPYSTFAGSKAS 551

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYD+W   PT LWDW+ LK+    YGL+
Sbjct: 552 EGILQYDLWNTVPTSLWDWSQLKMNIQKYGLR 583



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 8/125 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C  L+D++G+ F+  YK YE +G   FR    A+ L      + + +E++  TG   
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKG--QFREQMPAVTL------MRNIIEIQAETGTPY 394

Query: 121 FRARD 125
              +D
Sbjct: 395 MLYKD 399



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 682 GLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            + L   I++ Q ETGTPYMLYKDACNRKSNQ N  +I+
Sbjct: 376 AVTLMRNIIEIQAETGTPYMLYKDACNRKSNQSNCGLIK 414


>gi|390165363|gb|AFL65010.1| rr1 [Mamestra brassicae MNPV]
          Length = 761

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/464 (59%), Positives = 349/464 (75%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L+D++G+ F+  YK YE +G+F  Q+PA  L   I++ Q ETGTPYMLYKDACN
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKGQFREQMPAVTLMRNIIEIQAETGTPYMLYKDACN 402

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ N G IKCSNLC EIV+Y + DE AVCNLASIA+N YIN  + T++F  L  V K
Sbjct: 403 RKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIN--NDTFDFQLLHTVVK 460

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V  +LNKIID NFYP+E A+ SNMRHRPIGIG+QGLAD F+ +R+P+  + + LLNKQI
Sbjct: 461 HVVNSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVLLNKQI 520

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ ALEAS E+A+   PY T+ GS  S+GILQYD+W   PT LWDW+ LK  I K+
Sbjct: 521 AETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVPTSLWDWSQLKINIQKY 580

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++ RRVLSGEFQVVN +L+ DL++L L+
Sbjct: 581 GLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQVVNRYLVDDLIKLNLY 640

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ---KTVLDMAADRGAFIDQSQSL 507
            ++M+  ++ N GSI  I  IP  LK LY T+WEI +   K +++MAADRGAFIDQSQS 
Sbjct: 641 TNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIEMAADRGAFIDQSQSF 700

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N+YMA     KM+S+H +GWK GLKTGMYY RT PAAN+ QFT+
Sbjct: 701 NVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV 744



 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT LWDW+ LK  I K+G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++
Sbjct: 555 LQYDLWNTVPTSLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLF 614

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +L+ DL++L L+ ++M+  ++ N GSI  I  IP  LK LY T+WE
Sbjct: 615 LRRVLSGEFQVVNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWE 674

Query: 889 IPQ---KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I +   K +++MAADRGAFIDQSQS N+YMA     KM+S+H +GWK GLKTGMYY RT 
Sbjct: 675 IWENNGKYMIEMAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTL 734

Query: 946 PAANAIQFTI 955
           PAAN+ QFT+
Sbjct: 735 PAANSQQFTV 744



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P+  + + LLNKQI ET+Y+ ALEAS E+A+   PY T+ GS  S
Sbjct: 492 IGIQGLADAFVMLRIPYVSDAAVLLNKQIAETVYHAALEASYELASVSEPYSTFAGSKAS 551

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYD+W   PT LWDW+ LK+    YGL+
Sbjct: 552 EGILQYDLWNTVPTSLWDWSQLKINIQKYGLR 583



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 8/125 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C  L+D++G+ F+  YK YE +G   FR    A+ L      + + +E++  TG   
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKG--QFREQMPAVTL------MRNIIEIQAETGTPY 394

Query: 121 FRARD 125
              +D
Sbjct: 395 MLYKD 399



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 682 GLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            + L   I++ Q ETGTPYMLYKDACNRKSNQ N  +I+
Sbjct: 376 AVTLMRNIIEIQAETGTPYMLYKDACNRKSNQSNCGLIK 414


>gi|22549569|ref|NP_689342.1| rr1 gene product [Mamestra configurata NPV-B]
 gi|22476748|gb|AAM95154.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-B]
          Length = 761

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/464 (59%), Positives = 349/464 (75%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L+D++G+ F+  YK YE +G+F  Q+PA  L   I++ Q ETGTPYMLYKDACN
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKGQFREQMPAVTLMRNIIEIQAETGTPYMLYKDACN 402

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ N G IKCSNLC EIV+Y + DE AVCNLASIA+N YIN  + T++F  L  V K
Sbjct: 403 RKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYIN--NDTFDFQLLHTVVK 460

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V  +LNKIID NFYP+E A+ SNMRHRPIGIG+QGLAD F+ +R+P+  + + LLNKQI
Sbjct: 461 HVVDSLNKIIDRNFYPIETAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVLLNKQI 520

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ ALEAS E+A+   PY T+ GS  S+GILQYD+W   PT LWDW+ LK  I K+
Sbjct: 521 AETVYHAALEASYELASVSEPYSTFAGSKASEGILQYDLWNTVPTSLWDWSQLKINIQKY 580

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++ RRVLSGEFQVVN +L+ DL++L L+
Sbjct: 581 GLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQVVNRYLVDDLIKLNLY 640

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ---KTVLDMAADRGAFIDQSQSL 507
            ++M+  ++ N GSI  I  IP  LK LY T+WEI +   K +++MAADRGAFIDQSQS 
Sbjct: 641 TNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWEIWENNGKYMIEMAADRGAFIDQSQSF 700

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N+YMA     KM+S+H +GWK GLKTGMYY RT PAAN+ QFT+
Sbjct: 701 NVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTLPAANSQQFTV 744



 Score =  243 bits (621), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT LWDW+ LK  I K+G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++
Sbjct: 555 LQYDLWNTVPTSLWDWSQLKINIQKYGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLF 614

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +L+ DL++L L+ ++M+  ++ N GSI  I  IP  LK LY T+WE
Sbjct: 615 LRRVLSGEFQVVNRYLVDDLIKLNLYTNSMRKTIMANRGSIASIAKIPDNLKKLYMTIWE 674

Query: 889 IPQ---KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           I +   K +++MAADRGAFIDQSQS N+YMA     KM+S+H +GWK GLKTGMYY RT 
Sbjct: 675 IWENNGKYMIEMAADRGAFIDQSQSFNVYMANPTLPKMASVHMYGWKRGLKTGMYYFRTL 734

Query: 946 PAANAIQFTI 955
           PAAN+ QFT+
Sbjct: 735 PAANSQQFTV 744



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P+  + + LLNKQI ET+Y+ ALEAS E+A+   PY T+ GS  S
Sbjct: 492 IGIQGLADAFVMLRIPYVSDAAVLLNKQIAETVYHAALEASYELASVSEPYSTFAGSKAS 551

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQYD+W   PT LWDW+ LK+    YGL+
Sbjct: 552 EGILQYDLWNTVPTSLWDWSQLKINIQKYGLR 583



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 8/125 (6%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FM+RVE +  WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMKRVEENGIWSLMC 342

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
           PN C  L+D++G+ F+  YK YE +G   FR    A+ L      + + +E++  TG   
Sbjct: 343 PNECPKLNDTYGDDFEYWYKHYEDKG--QFREQMPAVTL------MRNIIEIQAETGTPY 394

Query: 121 FRARD 125
              +D
Sbjct: 395 MLYKD 399



 Score = 53.1 bits (126), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 682 GLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            + L   I++ Q ETGTPYMLYKDACNRKSNQ N  +I+
Sbjct: 376 AVTLMRNIIEIQAETGTPYMLYKDACNRKSNQSNCGLIK 414


>gi|269105082|ref|ZP_06157777.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160717|gb|EEZ39215.1| ribonucleoside-diphosphate reductase alpha subunit [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 729

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 261/463 (56%), Positives = 354/463 (76%), Gaps = 2/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 257 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFS 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 317 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 376

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   +  ++F KL  V K
Sbjct: 377 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASLALPKFVT--NTGFDFDKLHQVTK 434

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+ LLN+ I
Sbjct: 435 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDI 494

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIA + G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +IA+H
Sbjct: 495 AETMYHASLEASCEIAKQKGTYSSYDGSPISHGQFQFDLWCEQPSSRWDWSQLKHQIAEH 554

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N +L+ DL + GLW
Sbjct: 555 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLW 614

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q I+ IP  L+ +Y+TVWEI QK ++DM+A R  F+ QSQSLN++
Sbjct: 615 TSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWEISQKVIIDMSAARAPFVCQSQSLNLW 674

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A   +A++++MHF+ WK GLKTGMYYLR+KP+ NA++ T+ +
Sbjct: 675 LASPTFAQINAMHFYAWKRGLKTGMYYLRSKPSTNAVKVTVGQ 717



 Score =  247 bits (631), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 107/189 (56%), Positives = 149/189 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 529 FQFDLWCEQPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 588

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF ++N +L+ DL + GLW   ++D +I+NNGS+Q I+ IP  L+ +Y+TVWE
Sbjct: 589 KRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIPDDLQSVYRTVWE 648

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DM+A R  F+ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLR+KP+ 
Sbjct: 649 ISQKVIIDMSAARAPFVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRSKPST 708

Query: 949 NAIQFTIDK 957
           NA++ T+ +
Sbjct: 709 NAVKVTVGQ 717



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 257 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFS 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 317 PHNTKGLSDLYGAEFTQKYQEYERMGL 343



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+ LLN+ I ET+Y+ +LEASCEIA + G Y +Y+GSP+S
Sbjct: 466 LGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPIS 525

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 526 HGQFQFDLWCEQPSSRWDWSQLKHQIAEHGVR--NSLLIAQMPTAS 569



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 352 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 388


>gi|255713718|ref|XP_002553141.1| KLTH0D09922p [Lachancea thermotolerans]
 gi|238934521|emb|CAR22703.1| KLTH0D09922p [Lachancea thermotolerans CBS 6340]
          Length = 867

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 266/469 (56%), Positives = 354/469 (75%), Gaps = 6/469 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH D+ DFL+L+KN GKEE RARDLF  LWIPD FM RVE +  W L  
Sbjct: 313 RPGAFCIYLEPWHSDVLDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQNGSWCLFS 372

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL + +GE+F  LY+ YE      +++PA+KLW  IL SQ+ETG P+MLYKD+CN
Sbjct: 373 PDEAPGLQECFGEEFKKLYETYEKTLAPAKKMPAQKLWSEILQSQVETGGPFMLYKDSCN 432

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--NPADKTYNFTKLKDV 268
            KSNQ+NLGTIK SNLC EIV+Y+S  E AVCNLAS+AL  ++        ++F  L  +
Sbjct: 433 NKSNQKNLGTIKSSNLCCEIVQYSSPSETAVCNLASVALPSFVKLQREQAIFDFESLHKI 492

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++TKNL+ +ID+  YPVE+A+ SN ++RPI IGVQGLAD  + +R+PF    +R+LNK
Sbjct: 493 VKVLTKNLDSVIDICDYPVEDAKFSNEKNRPIAIGVQGLADALMILRIPFHSESARVLNK 552

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----LWDWAALK 384
           QIFETIY+ A+E S E + + GPY +++ SPVS+G  Q+D+WG+   +      DW  ++
Sbjct: 553 QIFETIYHAAVETSIERSKKLGPYPSFDNSPVSRGEFQFDLWGLNDDNYEFLFSDWKEMR 612

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           EK+ +HG+RNSLL+ PMPTAST+QILG  ESFEP TSNIY+RRVLSGEF V+N +++ D 
Sbjct: 613 EKVKQHGIRNSLLVGPMPTASTSQILGFTESFEPMTSNIYTRRVLSGEFTVINKYMVDDF 672

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
             LG+W++ +K+++I  NGSIQ IEGIP  LK+LY+TVWEIPQ+ ++D++ADRG FIDQS
Sbjct: 673 CRLGIWNEKLKNRIIEQNGSIQGIEGIPSNLKELYRTVWEIPQRVMIDLSADRGPFIDQS 732

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           QSLN+++ E    K++SMHF+GWK GLKTGMYYLRT+ A+ AI+FTI++
Sbjct: 733 QSLNLFLREPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASGAIKFTINQ 781



 Score =  259 bits (662), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 155/193 (80%), Gaps = 4/193 (2%)

Query: 769 FKYDMWGVTPTD----LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 824
           F++D+WG+   +      DW  ++EK+ +HG+RNSLL+ PMPTAST+QILG  ESFEP T
Sbjct: 589 FQFDLWGLNDDNYEFLFSDWKEMREKVKQHGIRNSLLVGPMPTASTSQILGFTESFEPMT 648

Query: 825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYK 884
           SNIY+RRVLSGEF V+N +++ D   LG+W++ +K+++I  NGSIQ IEGIP  LK+LY+
Sbjct: 649 SNIYTRRVLSGEFTVINKYMVDDFCRLGIWNEKLKNRIIEQNGSIQGIEGIPSNLKELYR 708

Query: 885 TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
           TVWEIPQ+ ++D++ADRG FIDQSQSLN+++ E    K++SMHF+GWK GLKTGMYYLRT
Sbjct: 709 TVWEIPQRVMIDLSADRGPFIDQSQSLNLFLREPTMGKLTSMHFYGWKKGLKTGMYYLRT 768

Query: 945 KPAANAIQFTIDK 957
           + A+ AI+FTI++
Sbjct: 769 QAASGAIKFTINQ 781



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 60/83 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH D+ DFL+L+KN GKEE RARDLF  LWIPD FM RVE +  W L  
Sbjct: 313 RPGAFCIYLEPWHSDVLDFLQLRKNQGKEELRARDLFLALWIPDLFMERVEQNGSWCLFS 372

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL + +GE+F  LY+ YE
Sbjct: 373 PDEAPGLQECFGEEFKKLYETYE 395



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A      N+   IGVQGLAD  + +R+PF    +R+LNKQIFETIY+ A+E S E + + 
Sbjct: 514 AKFSNEKNRPIAIGVQGLADALMILRIPFHSESARVLNKQIFETIYHAAVETSIERSKKL 573

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTD----LWDWAALKVLALVYGLK 684
           GPY +++ SPVS+G  Q+D+WG+   +      DW  ++     +G++
Sbjct: 574 GPYPSFDNSPVSRGEFQFDLWGLNDDNYEFLFSDWKEMREKVKQHGIR 621



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW  IL SQ+ETG P+MLYKD+CN KSNQ+NL  I+
Sbjct: 408 KLWSEILQSQVETGGPFMLYKDSCNNKSNQKNLGTIK 444


>gi|20070048|ref|NP_613252.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|20043442|gb|AAM09277.1| ribonucleotide reductase large subunit RR1 [Mamestra configurata
           NPV-A]
 gi|33331880|gb|AAQ11188.1| putative ribonucletide reductase large subunit-like protein
           [Mamestra configurata NPV-A]
          Length = 761

 Score =  587 bits (1514), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/464 (59%), Positives = 350/464 (75%), Gaps = 5/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FMRRV+ + +WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSLMC 342

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN C  L++++G++F+  YK YE +G+F  Q+PA  L   I++ Q ETGTPYMLYKDACN
Sbjct: 343 PNECPELNNTFGDEFEYWYKHYEDKGQFRDQMPAVTLMRTIIEIQAETGTPYMLYKDACN 402

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ N G IKCSNLC EIV+Y + DE AVCNLASIA+N YI   + T++F  L  V K
Sbjct: 403 RKSNQSNCGLIKCSNLCAEIVQYCAPDETAVCNLASIAVNKYI--INGTFDFQLLHSVVK 460

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            V  +LNKIID NFYPVE A+ SNMRHRPIGIG+QGLAD F+ +R+P+  + + LLNKQI
Sbjct: 461 HVVISLNKIIDRNFYPVEAAKKSNMRHRPIGIGIQGLADAFVMLRIPYVSDAAVLLNKQI 520

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ AL+AS ++A+   PY T+ GS  SQGILQYD+W   PT LWDW+ LK  I KH
Sbjct: 521 SETVYHAALDASLKLASDSEPYSTFAGSKASQGILQYDLWNAIPTSLWDWSQLKMNIQKH 580

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLL+A MPTA+TAQIL NNESFEP+ SN++ RRVLSGEFQVVN +L+ DL+ L L+
Sbjct: 581 GLRNSLLVAYMPTATTAQILNNNESFEPFHSNLFLRRVLSGEFQVVNRYLVDDLIALNLY 640

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI---PQKTVLDMAADRGAFIDQSQSL 507
             +M+ +++ N GSI  I+ IP  +K LY T+WE      K ++DMAADRGAFIDQSQS 
Sbjct: 641 TSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWECWHNNGKFMIDMAADRGAFIDQSQSF 700

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N+YMA+   AKM+S+H +GW+ GLKTGMYY RT PAAN+ QFT+
Sbjct: 701 NVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTLPAANSQQFTV 744



 Score =  246 bits (627), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 114/190 (60%), Positives = 145/190 (76%), Gaps = 3/190 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W   PT LWDW+ LK  I KHG+RNSLL+A MPTA+TAQIL NNESFEP+ SN++
Sbjct: 555 LQYDLWNAIPTSLWDWSQLKMNIQKHGLRNSLLVAYMPTATTAQILNNNESFEPFHSNLF 614

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVLSGEFQVVN +L+ DL+ L L+  +M+ +++ N GSI  I+ IP  +K LY T+WE
Sbjct: 615 LRRVLSGEFQVVNRYLVDDLIALNLYTSSMRKRIMANRGSIASIDEIPDNIKKLYMTIWE 674

Query: 889 I---PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
                 K ++DMAADRGAFIDQSQS N+YMA+   AKM+S+H +GW+ GLKTGMYY RT 
Sbjct: 675 CWHNNGKFMIDMAADRGAFIDQSQSFNVYMADPTLAKMASVHMYGWQRGLKTGMYYFRTL 734

Query: 946 PAANAIQFTI 955
           PAAN+ QFT+
Sbjct: 735 PAANSQQFTV 744



 Score =  112 bits (281), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 64/86 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DI D L +++N G E+ +ARDL   LW+PD FMRRV+ + +WSLMC
Sbjct: 283 RKGAQAVYVEPWHCDIMDVLHMRRNIGSEDTKARDLMNALWVPDIFMRRVQENGRWSLMC 342

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN C  L++++G++F+  YK YE +G
Sbjct: 343 PNECPELNNTFGDEFEYWYKHYEDKG 368



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F+ +R+P+  + + LLNKQI ET+Y+ AL+AS ++A+   PY T+ GS  S
Sbjct: 492 IGIQGLADAFVMLRIPYVSDAAVLLNKQISETVYHAALDASLKLASDSEPYSTFAGSKAS 551

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQYD+W   PT LWDW+ LK+    +GL+
Sbjct: 552 QGILQYDLWNAIPTSLWDWSQLKMNIQKHGLR 583



 Score = 53.9 bits (128), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 29/39 (74%)

Query: 682 GLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            + L   I++ Q ETGTPYMLYKDACNRKSNQ N  +I+
Sbjct: 376 AVTLMRTIIEIQAETGTPYMLYKDACNRKSNQSNCGLIK 414


>gi|254584212|ref|XP_002497674.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
 gi|238940567|emb|CAR28741.1| ZYRO0F10956p [Zygosaccharomyces rouxii]
          Length = 875

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 266/488 (54%), Positives = 367/488 (75%), Gaps = 8/488 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA+ IYLEPWH D+FDFL+L+KN GK+E RARDLF+ LWIPD FM+RV+ + +WSL  
Sbjct: 316 RPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGEWSLFS 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GLSD +G++F++LY++YEA    +++V A+KLW  IL +Q+ETG P+MLYKD+CN
Sbjct: 376 PDEAPGLSDVYGKEFEELYEQYEATALPMKRVKAQKLWSEILQAQVETGGPFMLYKDSCN 435

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY---INPADKTYNFTKLKD 267
            KSNQ+NLGTIK SNLC EIVEY+SKDE AVCNLAS+AL  +   +      ++F KL  
Sbjct: 436 LKSNQKNLGTIKSSNLCCEIVEYSSKDETAVCNLASVALPTFVVQVTNKGSIFDFVKLHA 495

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K +T+NL+++IDV  YP+ +A+ SN+R+RP  IGVQGLAD+F+ +R+P++  E+R+LN
Sbjct: 496 VVKTITRNLDRVIDVCKYPIPQAQYSNLRNRPEAIGVQGLADVFLMLRIPYESQEARILN 555

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----LWDWAAL 383
            QIFETIY+ A+E S E+A   G Y+T++GSP SQG+LQ+D+WG+   +      DW  L
Sbjct: 556 TQIFETIYHAAVETSIELAEEYGAYETFQGSPASQGLLQFDLWGLNEDNYDFLYRDWGEL 615

Query: 384 KEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           K +I    G+RNSLL+ PMPTAST+QILG  ESFEP TSN+Y+RRVLSGEF  VN +++ 
Sbjct: 616 KHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPMTSNVYARRVLSGEFINVNQYMVD 675

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
              +LG+W++ +K+++I +NGS+Q+I+G+P  +K +Y+TVWEIPQ+ ++DMA DR  FID
Sbjct: 676 HFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIYRTVWEIPQRPLIDMARDRSPFID 735

Query: 503 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
           QSQSLN++M      K++SMHFH W+ GLKTGMYYLRT+ A+ AIQFT++          
Sbjct: 736 QSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLRTQAASAAIQFTVNDENTLTGSVE 795

Query: 563 KDARSQEE 570
            +   +EE
Sbjct: 796 LNGSDEEE 803



 Score =  232 bits (591), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 150/211 (71%), Gaps = 5/211 (2%)

Query: 769 FKYDMWGVTPTDL----WDWAALKEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPY 823
            ++D+WG+   +      DW  LK +I    G+RNSLL+ PMPTAST+QILG  ESFEP 
Sbjct: 593 LQFDLWGLNEDNYDFLYRDWGELKHRIQNGRGLRNSLLLGPMPTASTSQILGYTESFEPM 652

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TSN+Y+RRVLSGEF  VN +++    +LG+W++ +K+++I +NGS+Q+I+G+P  +K +Y
Sbjct: 653 TSNVYARRVLSGEFINVNQYMVDHFCQLGIWNEKLKNRIIADNGSVQNIQGLPDWIKKIY 712

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           +TVWEIPQ+ ++DMA DR  FIDQSQSLN++M      K++SMHFH W+ GLKTGMYYLR
Sbjct: 713 RTVWEIPQRPLIDMARDRSPFIDQSQSLNLFMKTPTMGKLTSMHFHAWRHGLKTGMYYLR 772

Query: 944 TKPAANAIQFTIDKTKMANAMASKDTRSQEE 974
           T+ A+ AIQFT++           +   +EE
Sbjct: 773 TQAASAAIQFTVNDENTLTGSVELNGSDEEE 803



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 76/100 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA+ IYLEPWH D+FDFL+L+KN GK+E RARDLF+ LWIPD FM+RV+ + +WSL  
Sbjct: 316 RPGAYCIYLEPWHSDVFDFLQLRKNHGKDELRARDLFFALWIPDLFMKRVQCNGEWSLFS 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLE 100
           P+   GLSD +G++F++LY++YEA  L   R  A  ++ E
Sbjct: 376 PDEAPGLSDVYGKEFEELYEQYEATALPMKRVKAQKLWSE 415



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 4/92 (4%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+ + IGVQGLAD+F+ +R+P++  E+R+LN QIFETIY+ A+E S E+A   G Y+T++
Sbjct: 525 NRPEAIGVQGLADVFLMLRIPYESQEARILNTQIFETIYHAAVETSIELAEEYGAYETFQ 584

Query: 648 GSPVSQGILQYDMWGVTPTD----LWDWAALK 675
           GSP SQG+LQ+D+WG+   +      DW  LK
Sbjct: 585 GSPASQGLLQFDLWGLNEDNYDFLYRDWGELK 616



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)

Query: 659 DMWGVTPTDLWDWAALKVLAL--VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           D++G    +L++      L +  V   KLW  IL +Q+ETG P+MLYKD+CN KSNQ+NL
Sbjct: 384 DVYGKEFEELYEQYEATALPMKRVKAQKLWSEILQAQVETGGPFMLYKDSCNLKSNQKNL 443

Query: 717 EVIE 720
             I+
Sbjct: 444 GTIK 447


>gi|307169039|gb|EFN61884.1| Ribonucleoside-diphosphate reductase large subunit [Camponotus
           floridanus]
          Length = 744

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 266/443 (60%), Positives = 346/443 (78%), Gaps = 1/443 (0%)

Query: 96  AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCR 155
            +YLEPWH DIF+FL+LKKN G+E+ RA+D+FY LW PD FM+R+ +D  WSLMCP+ C 
Sbjct: 295 TVYLEPWHADIFEFLDLKKNIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSLMCPHECP 354

Query: 156 GLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ 215
            L +++GE+F+ LY +YE EG+F +Q+ AR LW  I+ +Q ETGTPY++YKD CNRK+N 
Sbjct: 355 DLIEAYGEEFELLYTRYEKEGRFRKQIKARDLWLLIIQTQFETGTPYIVYKDHCNRKTNH 414

Query: 216 QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKN 275
           QNLGTIKCS   TEI++Y+S DE+A+CN ASIA+NM+++P  KT++F KLK++ KIVT N
Sbjct: 415 QNLGTIKCSGFSTEIIQYSSSDEIAMCNTASIAVNMFVDPIKKTFDFNKLKEIVKIVTYN 474

Query: 276 LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIY 335
           L+K+ID NFYP+ E + S  +HR IGIGVQGLAD FI MR PF+  E+R LN QIFET+Y
Sbjct: 475 LDKMIDANFYPLPEIKLSCEKHRSIGIGVQGLADAFILMRYPFESQEARKLNIQIFETLY 534

Query: 336 YGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS 395
           YGALEASCEIA + G Y +Y+GSP+S+G+LQYDMW   PTDLWDW  LK+KI +HGVRNS
Sbjct: 535 YGALEASCEIAIKKGSYVSYKGSPISKGMLQYDMWNAKPTDLWDWNTLKKKIEEHGVRNS 594

Query: 396 LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMK 455
           LLIA M  A  AQ+L NN S EPYTSNIY    LS +F++V   LLRDL+E  LWD+N+ 
Sbjct: 595 LLIAQMSDAFMAQMLENNVSVEPYTSNIYVIHALSKQFRIVKPRLLRDLIEKKLWDENIC 654

Query: 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEIN 515
           +++I N+GSIQ+IE IP +LK LYKT WE+PQKT+ DMAA RG FIDQSQ LN++M +  
Sbjct: 655 NKIINNDGSIQNIEDIPNELKLLYKTAWEMPQKTIFDMAACRGPFIDQSQCLNVHMID-P 713

Query: 516 YAKMSSMHFHGWKLGLKTGMYYL 538
             K++SMHF+ W+ GLK+ + ++
Sbjct: 714 LEKLTSMHFYAWENGLKSSICHV 736



 Score =  212 bits (539), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 130/174 (74%), Gaps = 1/174 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PTDLWDW  LK+KI +HGVRNSLLIA M  A  AQ+L NN S EPYTSNIY
Sbjct: 564 LQYDMWNAKPTDLWDWNTLKKKIEEHGVRNSLLIAQMSDAFMAQMLENNVSVEPYTSNIY 623

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
               LS +F++V   LLRDL+E  LWD+N+ +++I N+GSIQ+IE IP +LK LYKT WE
Sbjct: 624 VIHALSKQFRIVKPRLLRDLIEKKLWDENICNKIINNDGSIQNIEDIPNELKLLYKTAWE 683

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYL 942
           +PQKT+ DMAA RG FIDQSQ LN++M +    K++SMHF+ W+ GLK+ + ++
Sbjct: 684 MPQKTIFDMAACRGPFIDQSQCLNVHMID-PLEKLTSMHFYAWENGLKSSICHV 736



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/83 (69%), Positives = 67/83 (80%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E+R LN QIFET+YYGALEASCEIA + G Y +Y+GSP+S
Sbjct: 501 IGVQGLADAFILMRYPFESQEARKLNIQIFETLYYGALEASCEIAIKKGSYVSYKGSPIS 560

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G+LQYDMW   PTDLWDW  LK
Sbjct: 561 KGMLQYDMWNAKPTDLWDWNTLK 583



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 64/81 (79%)

Query: 6   AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACR 65
            +YLEPWH DIF+FL+LKKN G+E+ RA+D+FY LW PD FM+R+ +D  WSLMCP+ C 
Sbjct: 295 TVYLEPWHADIFEFLDLKKNIGEEKLRAKDMFYALWTPDLFMQRIFNDDVWSLMCPHECP 354

Query: 66  GLSDSWGEKFDDLYKKYEAEG 86
            L +++GE+F+ LY +YE EG
Sbjct: 355 DLIEAYGEEFELLYTRYEKEG 375



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 9/148 (6%)

Query: 623 ETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYG 682
           E +++  + A  +    D      + S ++  ++     GVT  +L D  A ++ A +  
Sbjct: 11  EPVHFDEITARIKTLCYDLDMNYVDPSIIALRVITDLYSGVTTVEL-DNLASEIAASMIN 69

Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHY 742
               +AIL ++I             ++++ +   EVI +LY+  N  T  R P+IS+K+Y
Sbjct: 70  QHPDYAILAARIAISN--------LHKETKKTFSEVIADLYDAKNSITNKRLPIISEKYY 121

Query: 743 EIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +II  NAD+LNSAIIYDRDFNY++  +K
Sbjct: 122 KIIQSNADKLNSAIIYDRDFNYSYTTYK 149



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 28/36 (77%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW  I+ +Q ETGTPY++YKD CNRK+N QNL  I+
Sbjct: 386 LWLLIIQTQFETGTPYIVYKDHCNRKTNHQNLGTIK 421


>gi|50310227|ref|XP_455133.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644269|emb|CAG97840.1| KLLA0F01188p [Kluyveromyces lactis]
          Length = 855

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/482 (56%), Positives = 367/482 (76%), Gaps = 9/482 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAF IYLEPWH DI DFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WS+  
Sbjct: 314 RPGAFCIYLEPWHADIIDFLQLRKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFS 373

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D +G++FD LY++YE E    +++ A+++W  IL SQ ETG P+MLYKDACN
Sbjct: 374 PDEAPGLTDCYGDEFDKLYERYEKELIPRKKMKAQQIWSEILQSQTETGVPFMLYKDACN 433

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD---KTYNFTKLKD 267
           +KSNQ+NLG IK SNLC EIVEY+S +EVAVCNLAS+AL  Y+N +      ++F KL  
Sbjct: 434 KKSNQKNLGVIKSSNLCCEIVEYSSPEEVAVCNLASVALPTYVNLSSDGPPVFDFVKLHH 493

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K++ KNL++ IDV  YPV EARN N+R+RP+ IGVQGLAD F+  R PF+  ++  LN
Sbjct: 494 VVKVLVKNLDRTIDVGKYPVPEARNGNIRNRPLAIGVQGLADTFMLCRTPFESVDAATLN 553

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----LWDWAAL 383
           KQIFETIY+ A+EAS E+A   G Y+++ GSP S+G LQ+D+W +   +      DW +L
Sbjct: 554 KQIFETIYHAAIEASTELAELFGHYESFPGSPASEGQLQFDLWSLNKDNYKFLFDDWDSL 613

Query: 384 KEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
           K +I K  G+RNSLL+ PMPTAST+QILG  ESFEP TSNIYSRRVLSGEF ++N +++ 
Sbjct: 614 KSRITKGKGLRNSLLVGPMPTASTSQILGFTESFEPMTSNIYSRRVLSGEFTIINQYMVD 673

Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
           D  +LG+W++ +K++++ +NGSIQ IEGIP+++K+LYKTVWE  Q+ ++D+++DR  FID
Sbjct: 674 DFCQLGIWNEKLKNRILRDNGSIQTIEGIPEEVKNLYKTVWETSQRKMIDLSSDRAPFID 733

Query: 503 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI-DKTKMANAMA 561
           QSQSLN+Y+ E    K+++MHF+ WK GLKTGMYYLRT+ A+ AIQFT+ D+  + + + 
Sbjct: 734 QSQSLNLYLREPTMGKLTAMHFYTWKKGLKTGMYYLRTQAASRAIQFTLNDENTLLDKVT 793

Query: 562 SK 563
           +K
Sbjct: 794 TK 795



 Score =  236 bits (601), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 157/205 (76%), Gaps = 6/205 (2%)

Query: 769 FKYDMWGVTPTD----LWDWAALKEKIAK-HGVRNSLLIAPMPTASTAQILGNNESFEPY 823
            ++D+W +   +      DW +LK +I K  G+RNSLL+ PMPTAST+QILG  ESFEP 
Sbjct: 591 LQFDLWSLNKDNYKFLFDDWDSLKSRITKGKGLRNSLLVGPMPTASTSQILGFTESFEPM 650

Query: 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
           TSNIYSRRVLSGEF ++N +++ D  +LG+W++ +K++++ +NGSIQ IEGIP+++K+LY
Sbjct: 651 TSNIYSRRVLSGEFTIINQYMVDDFCQLGIWNEKLKNRILRDNGSIQTIEGIPEEVKNLY 710

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KTVWE  Q+ ++D+++DR  FIDQSQSLN+Y+ E    K+++MHF+ WK GLKTGMYYLR
Sbjct: 711 KTVWETSQRKMIDLSSDRAPFIDQSQSLNLYLREPTMGKLTAMHFYTWKKGLKTGMYYLR 770

Query: 944 TKPAANAIQFTI-DKTKMANAMASK 967
           T+ A+ AIQFT+ D+  + + + +K
Sbjct: 771 TQAASRAIQFTLNDENTLLDKVTTK 795



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 68/85 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAF IYLEPWH DI DFL+L+KN GKEE RARDLFY LWIPD FM+RVE++  WS+  
Sbjct: 314 RPGAFCIYLEPWHADIIDFLQLRKNHGKEEMRARDLFYALWIPDLFMKRVENNEDWSIFS 373

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+   GL+D +G++FD LY++YE E
Sbjct: 374 PDEAPGLTDCYGDEFDKLYERYEKE 398



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 61/92 (66%), Gaps = 4/92 (4%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   IGVQGLAD F+  R PF+  ++  LNKQIFETIY+ A+EAS E+A   G Y+++ 
Sbjct: 523 NRPLAIGVQGLADTFMLCRTPFESVDAATLNKQIFETIYHAAIEASTELAELFGHYESFP 582

Query: 648 GSPVSQGILQYDMWGVTPTD----LWDWAALK 675
           GSP S+G LQ+D+W +   +      DW +LK
Sbjct: 583 GSPASEGQLQFDLWSLNKDNYKFLFDDWDSLK 614



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           ++W  IL SQ ETG P+MLYKDACN+KSNQ+NL VI+
Sbjct: 409 QIWSEILQSQTETGVPFMLYKDACNKKSNQKNLGVIK 445


>gi|343495112|ref|ZP_08733307.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           nigripulchritudo ATCC 27043]
 gi|342823809|gb|EGU58401.1| ribonucleoside-diphosphate reductase, alpha subunit [Vibrio
           nigripulchritudo ATCC 27043]
          Length = 751

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 262/461 (56%), Positives = 354/461 (76%), Gaps = 2/461 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE D +W+L  
Sbjct: 280 RKGSFAIYLEPWHADIESFLDLRKNHGKEEFRARDLFLSLWVPDLFMERVELDGEWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
            +  +GLSD +G+ F  LY+KYE EG  I+ + AR L   I++SQ ETGTPYMLYKD+CN
Sbjct: 340 EHNAKGLSDVYGDDFVALYEKYEREGLGIKTIKARNLMTQIIESQAETGTPYMLYKDSCN 399

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ +E A CNLAS+AL   +   D  ++F KL ++ K
Sbjct: 400 IKSNQKNLGTIKSSNLCAEIMEVSTPEETAACNLASLALPKCV--IDGQFDFDKLHEITK 457

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F ++ L +D  E+R LN+ I
Sbjct: 458 IAIKNLDRVIDVNYHPTDKIEVSNHAHRPVGLGIQGLADVFFKLHLAYDSEEARELNRAI 517

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEAS E+A   G Y +Y+GSP SQG  Q+D+W V P+D WDW AL+E++++H
Sbjct: 518 AETMYHASLEASSELARDLGAYSSYDGSPASQGTFQFDLWDVQPSDRWDWNALREQVSQH 577

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNSLLIA MPTASTAQILGN E+FE  TSNIY R+ LSGEF +VN HL+  L E GLW
Sbjct: 578 GLRNSLLIAQMPTASTAQILGNTEAFEAQTSNIYKRQTLSGEFIIVNRHLVAALEERGLW 637

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
              ++D +I+NNGS+Q+IE IP+ +K +Y+T+WE+ QK ++DM+ADRG ++ QSQSLN++
Sbjct: 638 TPAIRDSIILNNGSLQEIEAIPEDVKSVYRTIWELSQKVIIDMSADRGPYVCQSQSLNLW 697

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           +A   +A++++MHF+ WK GLKTGMYYLRTKP+ANA++ T+
Sbjct: 698 LASPTFAQINAMHFYAWKRGLKTGMYYLRTKPSANAVKVTV 738



 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 154/187 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P+D WDW AL+E++++HG+RNSLLIA MPTASTAQILGN E+FE  TSNIY
Sbjct: 552 FQFDLWDVQPSDRWDWNALREQVSQHGLRNSLLIAQMPTASTAQILGNTEAFEAQTSNIY 611

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R+ LSGEF +VN HL+  L E GLW   ++D +I+NNGS+Q+IE IP+ +K +Y+T+WE
Sbjct: 612 KRQTLSGEFIIVNRHLVAALEERGLWTPAIRDSIILNNGSLQEIEAIPEDVKSVYRTIWE 671

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK ++DM+ADRG ++ QSQSLN+++A   +A++++MHF+ WK GLKTGMYYLRTKP+A
Sbjct: 672 LSQKVIIDMSADRGPYVCQSQSLNLWLASPTFAQINAMHFYAWKRGLKTGMYYLRTKPSA 731

Query: 949 NAIQFTI 955
           NA++ T+
Sbjct: 732 NAVKVTV 738



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE D +W+L  
Sbjct: 280 RKGSFAIYLEPWHADIESFLDLRKNHGKEEFRARDLFLSLWVPDLFMERVELDGEWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
            +  +GLSD +G+ F  LY+KYE EGL
Sbjct: 340 EHNAKGLSDVYGDDFVALYEKYEREGL 366



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 96/167 (57%), Gaps = 15/167 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F ++ L +D  E+R LN+ I ET+Y+ +LEAS E+A   G Y +Y+GSP S
Sbjct: 489 LGIQGLADVFFKLHLAYDSEEARELNRAIAETMYHASLEASSELARDLGAYSSYDGSPAS 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSN 712
           QG  Q+D+W V P+D WDW AL+     +GL+   ++L +Q+ T +   +  +    ++ 
Sbjct: 549 QGTFQFDLWDVQPSDRWDWNALREQVSQHGLR--NSLLIAQMPTASTAQILGNTEAFEAQ 606

Query: 713 QQNL---EVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNA 749
             N+   + +   + +VN+       E G  TP I D    II+ N 
Sbjct: 607 TSNIYKRQTLSGEFIIVNRHLVAALEERGLWTPAIRDS---IILNNG 650



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L   I++SQ ETGTPYMLYKD+CN KSNQ+NL  I+
Sbjct: 376 LMTQIIESQAETGTPYMLYKDSCNIKSNQKNLGTIK 411


>gi|320038060|gb|EFW19996.1| ribonucleoside-diphosphate reductase large subunit [Coccidioides
           posadasii str. Silveira]
          Length = 643

 Score =  580 bits (1496), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 265/381 (69%), Positives = 315/381 (82%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 263 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 322

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL+D +G++F+ LY++YE EG+  + + A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 323 PNEAPGLADVYGDEFEALYEQYEKEGRGRKTIKAQKLWYAILEAQTETGNPFMLYKDACN 382

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           RKSNQ+NLGTI+ SNLCTEI+EYTS DEVAVCNLAS+AL  Y++P    Y+F KL +V +
Sbjct: 383 RKSNQKNLGTIRSSNLCTEIIEYTSPDEVAVCNLASLALPTYVDPVRGEYDFGKLHEVTQ 442

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ +NLNKIID N YPV EAR SN RHRPI +GVQGLAD F+ +RLPFD  E+R LN QI
Sbjct: 443 VLVRNLNKIIDGNHYPVPEARKSNFRHRPIAVGVQGLADAFLALRLPFDSPEARQLNIQI 502

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+ AL ASC+IA  DGPY+TYEGSPVSQG+LQYDMW VTPTDLWDW +LK  IAKH
Sbjct: 503 FETIYHAALTASCDIAKVDGPYETYEGSPVSQGVLQYDMWNVTPTDLWDWDSLKRDIAKH 562

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL+APMPTAST+QILG NE FEPYTSNIYSRRVL+GEFQVVN  LL+DLV+LGLW
Sbjct: 563 GVRNSLLVAPMPTASTSQILGFNECFEPYTSNIYSRRVLAGEFQVVNPWLLKDLVDLGLW 622

Query: 451 DDNMKDQLIVNNGSIQDIEGI 471
            DNMK+++I   GSIQ I  I
Sbjct: 623 SDNMKNRIIAEGGSIQSIPNI 643



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/107 (75%), Positives = 91/107 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK  IAKHGVRNSLL+APMPTAST+QILG NE FEPYTSNIY
Sbjct: 537 LQYDMWNVTPTDLWDWDSLKRDIAKHGVRNSLLVAPMPTASTSQILGFNECFEPYTSNIY 596

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGI 875
           SRRVL+GEFQVVN  LL+DLV+LGLW DNMK+++I   GSIQ I  I
Sbjct: 597 SRRVLAGEFQVVNPWLLKDLVDLGLWSDNMKNRIIAEGGSIQSIPNI 643



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 75/93 (80%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            +GVQGLAD F+ +RLPFD  E+R LN QIFETIY+ AL ASC+IA  DGPY+TYEGSPV
Sbjct: 473 AVGVQGLADAFLALRLPFDSPEARQLNIQIFETIYHAALTASCDIAKVDGPYETYEGSPV 532

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           SQG+LQYDMW VTPTDLWDW +LK     +G++
Sbjct: 533 SQGVLQYDMWNVTPTDLWDWDSLKRDIAKHGVR 565



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIF+FL+L+KN GKEE RARDLF  LW PD FM+RVE +  W+L C
Sbjct: 263 RPGAFAIYLEPWHSDIFEFLDLRKNHGKEEVRARDLFLALWTPDLFMKRVEKNGDWTLFC 322

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL+D +G++F+ LY++YE EG
Sbjct: 323 PNEAPGLADVYGDEFEALYEQYEKEG 348



 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 9/124 (7%)

Query: 647 EGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
           + + ++Q ++     GVT  +L + AA +  A +      +AIL ++I            
Sbjct: 5   DAAAITQKVISGVYQGVTTIELDNLAA-ETAAYMTVTHPDYAILAARIAVSN-------- 55

Query: 707 CNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
            ++++ +Q   VI++LY+ +N +     PMIS K YEI+MK++  LNSAI+YDRDFNY +
Sbjct: 56  LHKQTKKQFSSVIDDLYHYINPKNNRPAPMISQKTYEIVMKHSAELNSAIVYDRDFNYQY 115

Query: 767 FGFK 770
           FGFK
Sbjct: 116 FGFK 119



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL  I
Sbjct: 358 KLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 393


>gi|74229829|ref|YP_309033.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
 gi|72259743|gb|AAZ67514.1| ribonucleotide reductase (rr1) [Trichoplusia ni SNPV]
          Length = 772

 Score =  580 bits (1496), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/476 (56%), Positives = 355/476 (74%), Gaps = 1/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+Y+EPWH DIF FL+LK+N G E+ +ARDLF+ +W P  FM+RV +  +WSLMC
Sbjct: 284 RKGALAVYIEPWHADIFTFLDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMC 343

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D +GE+F+ LY+ YE +GKF  Q+ A  L   I++ Q+ETG PYML+KD  N
Sbjct: 344 PDECPGLNDCYGEEFERLYESYETQGKFKEQILALDLHRKIIEIQVETGGPYMLHKDNVN 403

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+NQ+NLG I+ SNLC EIV+Y+   E AVCNLASIA+N + N   K ++F  L  VA+
Sbjct: 404 EKNNQKNLGVIRNSNLCAEIVQYSDNKETAVCNLASIAVNCFANKRTKNFDFESLYKVAR 463

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +VT NLNKIID NFYP+  A+ SN +HRPIGIG+QGLAD F  + LP+D  ++R LN++I
Sbjct: 464 VVTNNLNKIIDKNFYPLTSAQVSNFKHRPIGIGIQGLADAFAILNLPYDSQQARELNRKI 523

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT-DLWDWAALKEKIAK 389
            ETIYYGAL  S E+A   G Y +Y GSP S G LQ+D+W ++ + DLW+W  LK ++A 
Sbjct: 524 SETIYYGALSQSIELAKLHGAYDSYNGSPASSGHLQFDLWNISQSNDLWNWDELKRQMAI 583

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLLIA MPTA+TAQILGNNESFEP+TSN+Y RRVLSGE+Q+VN HL+  LV+  +
Sbjct: 584 HGLRNSLLIAYMPTATTAQILGNNESFEPFTSNLYVRRVLSGEYQIVNQHLVDKLVDCNV 643

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           +   +  ++I NNGS+Q+I+ IP  +K L+KT WEI QK +L+MAADRG +IDQSQSLN+
Sbjct: 644 YSTELMMKIIKNNGSVQNIDDIPHDVKALFKTAWEIKQKVLLNMAADRGPYIDQSQSLNL 703

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           ++A  +Y  +SS+H + W+ GLKTGMYYLRTKPAAN IQFT+  +      ++ DA
Sbjct: 704 FVANPSYKILSSIHNYSWEKGLKTGMYYLRTKPAANTIQFTVPSSSPFTKPSTDDA 759



 Score =  245 bits (626), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 112/188 (59%), Positives = 151/188 (80%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPT-DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D+W ++ + DLW+W  LK ++A HG+RNSLLIA MPTA+TAQILGNNESFEP+TSN+
Sbjct: 558 LQFDLWNISQSNDLWNWDELKRQMAIHGLRNSLLIAYMPTATTAQILGNNESFEPFTSNL 617

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           Y RRVLSGE+Q+VN HL+  LV+  ++   +  ++I NNGS+Q+I+ IP  +K L+KT W
Sbjct: 618 YVRRVLSGEYQIVNQHLVDKLVDCNVYSTELMMKIIKNNGSVQNIDDIPHDVKALFKTAW 677

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EI QK +L+MAADRG +IDQSQSLN+++A  +Y  +SS+H + W+ GLKTGMYYLRTKPA
Sbjct: 678 EIKQKVLLNMAADRGPYIDQSQSLNLFVANPSYKILSSIHNYSWEKGLKTGMYYLRTKPA 737

Query: 948 ANAIQFTI 955
           AN IQFT+
Sbjct: 738 ANTIQFTV 745



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+Y+EPWH DIF FL+LK+N G E+ +ARDLF+ +W P  FM+RV +  +WSLMC
Sbjct: 284 RKGALAVYIEPWHADIFTFLDLKRNMGAEDMKARDLFFAMWTPSLFMKRVSAGEKWSLMC 343

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D +GE+F+ LY+ YE +G
Sbjct: 344 PDECPGLNDCYGEEFERLYESYETQG 369



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F  + LP+D  ++R LN++I ETIYYGAL  S E+A   G Y +Y GSP S
Sbjct: 495 IGIQGLADAFAILNLPYDSQQARELNRKISETIYYGALSQSIELAKLHGAYDSYNGSPAS 554

Query: 653 QGILQYDMWGVTPT-DLWDWAALKVLALVYGLK 684
            G LQ+D+W ++ + DLW+W  LK    ++GL+
Sbjct: 555 SGHLQFDLWNISQSNDLWNWDELKRQMAIHGLR 587



 Score = 45.8 bits (107), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +  L L   I++ Q+ETG PYML+KD  N K+NQ+NL VI
Sbjct: 375 ILALDLHRKIIEIQVETGGPYMLHKDNVNEKNNQKNLGVI 414


>gi|429963199|gb|ELA42743.1| ribonucleoside-diphosphate reductase, alpha subunit [Vittaforma
           corneae ATCC 50505]
          Length = 771

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 257/476 (53%), Positives = 361/476 (75%), Gaps = 3/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R    A YLEPWH D+FD+L+++KN+G EE RARD+F  +WI D FM RVE+D +WSL  
Sbjct: 277 RQSTIAFYLEPWHMDVFDYLDVRKNSGNEEMRARDIFIAMWINDLFMERVENDEEWSLFD 336

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL D WG++F  LY KYE     +  +PA+KL+ AI++SQIETGTPYM+YKD CN
Sbjct: 337 PNEAKGLYDVWGDEFKKLYLKYEKTLSRV-VIPAQKLFKAIINSQIETGTPYMVYKDTCN 395

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           R SNQQNLGTI+ SNLC EI+EY++ DE+AVCNLAS+ L  ++   +  ++F  L++V K
Sbjct: 396 RYSNQQNLGTIRSSNLCAEIIEYSASDEIAVCNLASVCLPAFVK--NGVFDFNALREVVK 453

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
               NLN++ID NFYPV E   SN++HRP+GIG+QGLAD F ++R PF+  ++R LNK I
Sbjct: 454 AALVNLNRVIDNNFYPVPETSRSNLKHRPVGIGIQGLADTFSKLRYPFESQQARELNKLI 513

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ A+E+S E+A ++GPY ++ GSP+S+GI  ++M+G  P+ +W+W  L+ K+ ++
Sbjct: 514 AETMYFAAIESSAELAMQEGPYSSFVGSPLSKGIFHFEMYGAQPSGMWNWEELRAKVLQY 573

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL IA MPTA T+Q+ GN+E FEPYTSNI++RR ++GEFQVVN +L+ DL  LG+W
Sbjct: 574 GVRNSLFIALMPTAGTSQLFGNSECFEPYTSNIFTRRTVAGEFQVVNTYLMEDLERLGMW 633

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
           ++ MK+ +I + GSIQ I  IPQ++K+LYKTVWEI  K+V+D+AADR  F+DQS S+NI+
Sbjct: 634 NEEMKNIIIEHEGSIQSIPCIPQEIKNLYKTVWEIKMKSVIDLAADRQPFVDQSMSMNIF 693

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           +A+  +A++SSMHF+GW+  +KTGMYYLRTKP  N I+FT+++  +   ++S   R
Sbjct: 694 LAQPTFAQLSSMHFYGWRRKIKTGMYYLRTKPILNPIKFTVNQELVEKTLSSFGNR 749



 Score =  251 bits (642), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 157/202 (77%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F ++M+G  P+ +W+W  L+ K+ ++GVRNSL IA MPTA T+Q+ GN+E FEPYTSNI+
Sbjct: 548 FHFEMYGAQPSGMWNWEELRAKVLQYGVRNSLFIALMPTAGTSQLFGNSECFEPYTSNIF 607

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR ++GEFQVVN +L+ DL  LG+W++ MK+ +I + GSIQ I  IPQ++K+LYKTVWE
Sbjct: 608 TRRTVAGEFQVVNTYLMEDLERLGMWNEEMKNIIIEHEGSIQSIPCIPQEIKNLYKTVWE 667

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  K+V+D+AADR  F+DQS S+NI++A+  +A++SSMHF+GW+  +KTGMYYLRTKP  
Sbjct: 668 IKMKSVIDLAADRQPFVDQSMSMNIFLAQPTFAQLSSMHFYGWRRKIKTGMYYLRTKPIL 727

Query: 949 NAIQFTIDKTKMANAMASKDTR 970
           N I+FT+++  +   ++S   R
Sbjct: 728 NPIKFTVNQELVEKTLSSFGNR 749



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 60/83 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R    A YLEPWH D+FD+L+++KN+G EE RARD+F  +WI D FM RVE+D +WSL  
Sbjct: 277 RQSTIAFYLEPWHMDVFDYLDVRKNSGNEEMRARDIFIAMWINDLFMERVENDEEWSLFD 336

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN  +GL D WG++F  LY KYE
Sbjct: 337 PNEAKGLYDVWGDEFKKLYLKYE 359



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 78/117 (66%), Gaps = 5/117 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLAD F ++R PF+  ++R LNK I ET+Y+ A+E+S E+A ++GPY ++ GSP+S
Sbjct: 485 IGIQGLADTFSKLRYPFESQQARELNKLIAETMYFAAIESSAELAMQEGPYSSFVGSPLS 544

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQIETGTPYMLYKDAC 707
           +GI  ++M+G  P+ +W+W  L+   L YG++  L+ A++ +    GT  +     C
Sbjct: 545 KGIFHFEMYGAQPSGMWNWEELRAKVLQYGVRNSLFIALMPT---AGTSQLFGNSEC 598



 Score = 63.2 bits (152), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 658 YDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
           YD+WG     L+  +       ++   KL+ AI++SQIETGTPYM+YKD CNR SNQQNL
Sbjct: 344 YDVWGDEFKKLYLKYEKTLSRVVIPAQKLFKAIINSQIETGTPYMVYKDTCNRYSNQQNL 403

Query: 717 EVI 719
             I
Sbjct: 404 GTI 406


>gi|332022563|gb|EGI62865.1| Ribonucleoside-diphosphate reductase large subunit [Acromyrmex
           echinatior]
          Length = 748

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 263/436 (60%), Positives = 338/436 (77%), Gaps = 1/436 (0%)

Query: 93  GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 152
           G   +YLEPWH DIF+FL+LK++ G+E+ RA+ + YGLW P+ FM+RV  D  WSLMCP+
Sbjct: 301 GPITVYLEPWHSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSLMCPH 360

Query: 153 TCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRK 212
            C GL ++WG++F+ LY KYE EG+F RQ+ AR+LW  I+  Q ETG PY+++KD CN K
Sbjct: 361 ECPGLIEAWGDEFETLYTKYEQEGRFRRQIKARELWLLIIQIQCETGVPYIIFKDHCNYK 420

Query: 213 SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIV 272
           SN Q+LGTIKCS+  TE+V+Y+S DEVA+CN ASIA+NM++N   K ++F KLK++AKIV
Sbjct: 421 SNHQHLGTIKCSSFSTEVVQYSSSDEVAMCNTASIAVNMFVNSTKKVFDFYKLKEIAKIV 480

Query: 273 TKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFE 332
           T NL+K+IDVN YP+ EA+ S  +HR IGIGVQGLAD FI MR PF+  E+  LN QIFE
Sbjct: 481 THNLDKMIDVNVYPLPEAKLSCDKHRSIGIGVQGLADAFILMRYPFESKEANELNVQIFE 540

Query: 333 TIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGV 392
           T+YYGALEASCEIA   GPY++Y+ SP+S+GILQ+DMW V PT+LWDW  LK KIAKHG+
Sbjct: 541 TLYYGALEASCEIATEKGPYESYKDSPISEGILQFDMWHVKPTNLWDWDILKAKIAKHGL 600

Query: 393 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDD 452
           RNSLLIA M  A  AQ+L NN S EPY SNIY+   LS ++ ++  HLLRDL+E GLWD+
Sbjct: 601 RNSLLIAQMSDAFMAQMLENNMSIEPYMSNIYTIHALSKQYSIIKPHLLRDLIEKGLWDE 660

Query: 453 NMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA 512
           NM +++I N GSIQ+IE IP+ LK LYKTVWE+PQKT+ +MAA RG FIDQSQ LN++M 
Sbjct: 661 NMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWEMPQKTIFEMAASRGPFIDQSQCLNVHMI 720

Query: 513 EINYAKMSSMHFHGWK 528
           +    K++SMHF  W+
Sbjct: 721 D-PLEKLTSMHFFAWE 735



 Score =  209 bits (533), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 98/164 (59%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW V PT+LWDW  LK KIAKHG+RNSLLIA M  A  AQ+L NN S EPY SNIY
Sbjct: 573 LQFDMWHVKPTNLWDWDILKAKIAKHGLRNSLLIAQMSDAFMAQMLENNMSIEPYMSNIY 632

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +   LS ++ ++  HLLRDL+E GLWD+NM +++I N GSIQ+IE IP+ LK LYKTVWE
Sbjct: 633 TIHALSKQYSIIKPHLLRDLIEKGLWDENMCNKIIFNGGSIQNIEEIPEDLKLLYKTVWE 692

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWK 932
           +PQKT+ +MAA RG FIDQSQ LN++M +    K++SMHF  W+
Sbjct: 693 MPQKTIFEMAASRGPFIDQSQCLNVHMID-PLEKLTSMHFFAWE 735



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/92 (64%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI MR PF+  E+  LN QIFET+YYGALEASCEIA   GPY++Y+ SP+S
Sbjct: 510 IGVQGLADAFILMRYPFESKEANELNVQIFETLYYGALEASCEIATEKGPYESYKDSPIS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ+DMW V PT+LWDW  LK     +GL+
Sbjct: 570 EGILQFDMWHVKPTNLWDWDILKAKIAKHGLR 601



 Score =  119 bits (298), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query: 3   GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 62
           G   +YLEPWH DIF+FL+LK++ G+E+ RA+ + YGLW P+ FM+RV  D  WSLMCP+
Sbjct: 301 GPITVYLEPWHSDIFEFLDLKRSIGEEQLRAKGMCYGLWTPNLFMKRVFDDDVWSLMCPH 360

Query: 63  ACRGLSDSWGEKFDDLYKKYEAEG 86
            C GL ++WG++F+ LY KYE EG
Sbjct: 361 ECPGLIEAWGDEFETLYTKYEQEG 384



 Score = 63.9 bits (154), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI  LY   +  T    P+IS+K+Y+II  NAD+LNSAI+YDRDFNY++  FK
Sbjct: 103 EVIANLYYAKSSITNEHLPIISEKYYQIIQNNADKLNSAILYDRDFNYSYATFK 156



 Score = 47.4 bits (111), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 26/37 (70%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +LW  I+  Q ETG PY+++KD CN KSN Q+L  I+
Sbjct: 394 ELWLLIIQIQCETGVPYIIFKDHCNYKSNHQHLGTIK 430


>gi|297837607|ref|XP_002886685.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332526|gb|EFH62944.1| hypothetical protein ARALYDRAFT_893641 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 688

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/461 (59%), Positives = 353/461 (76%), Gaps = 12/461 (2%)

Query: 93  GAFAIYLEPWHGDIFDFLELKKNTGK-EEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 151
           G FA+YLEPWH DIF+FL+++KN GK +  +   +   LWIPD FM RV+ D +WSL CP
Sbjct: 220 GPFAVYLEPWHADIFEFLKIQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCP 279

Query: 152 NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNR 211
           N   GL+D WG +F+ LY KYE EGK  +  PA++ +F IL SQ+ETG PYML+KD+CNR
Sbjct: 280 NEAPGLADCWGTEFERLYTKYEREGKAKKVFPAQEPFFDILTSQLETGMPYMLFKDSCNR 339

Query: 212 KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN--PA---------DKTY 260
           KSNQQNLGTIK S+LCT ++EYTS  E  VCNLASIAL++ ++  P+          + +
Sbjct: 340 KSNQQNLGTIKSSSLCTGVIEYTSPTETTVCNLASIALDVPLDSHPSKLAGSLRSKSRYF 399

Query: 261 NFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDC 320
           ++ KL +V  IVT +L++IID N+YPVE A  SNMRHRPIGIGVQGLAD FI + +PFD 
Sbjct: 400 DYDKLAEVTAIVTNDLDRIIDGNYYPVETAETSNMRHRPIGIGVQGLADAFILLGMPFDS 459

Query: 321 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380
            E++ LNK IFETIYY AL+AS E+AAR+  Y+TY+GSP+S+GILQ DMW VTP++ WDW
Sbjct: 460 PEAQKLNKDIFETIYYHALKASSELAARNDAYETYKGSPMSKGILQPDMWNVTPSNRWDW 519

Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
             L+E I+K+GVRNSLL++ MPTAST+QILGNNESFEPYTSNIYS R LSGE  +VN HL
Sbjct: 520 DFLREMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHRGLSGESILVNKHL 579

Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 500
           L DL E+GLW   +K+++I  NGSI+++  IP  +K +Y+T WEI Q+TV+DMA DRG +
Sbjct: 580 LHDLTEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQRTVVDMAVDRGCY 639

Query: 501 IDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           IDQSQ+LNI + E +Y K++S+HF+ W  GLKTGM+YLR++
Sbjct: 640 IDQSQTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSR 680



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 140/174 (80%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMW VTP++ WDW  L+E I+K+GVRNSLL++ MPTAST+QILGNNESFEPYTSNIYS R
Sbjct: 507 DMWNVTPSNRWDWDFLREMISKNGVRNSLLVSLMPTASTSQILGNNESFEPYTSNIYSHR 566

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGE  +VN HLL DL E+GLW   +K+++I  NGSI+++  IP  +K +Y+T WEI Q
Sbjct: 567 GLSGESILVNKHLLHDLTEMGLWTPTLKEKIIDENGSIRNVPEIPDDMKAIYRTAWEIKQ 626

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           +TV+DMA DRG +IDQSQ+LNI + E +Y K++S+HF+ W  GLKTGM+YLR++
Sbjct: 627 RTVVDMAVDRGCYIDQSQTLNINLEEPSYQKLTSLHFYTWTKGLKTGMHYLRSR 680



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 71/92 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + +PFD  E++ LNK IFETIYY AL+AS E+AAR+  Y+TY+GSP+S
Sbjct: 441 IGVQGLADAFILLGMPFDSPEAQKLNKDIFETIYYHALKASSELAARNDAYETYKGSPMS 500

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQ DMW VTP++ WDW  L+ +    G++
Sbjct: 501 KGILQPDMWNVTPSNRWDWDFLREMISKNGVR 532



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/85 (55%), Positives = 60/85 (70%), Gaps = 1/85 (1%)

Query: 3   GAFAIYLEPWHGDIFDFLELKKNTGK-EEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 61
           G FA+YLEPWH DIF+FL+++KN GK +  +   +   LWIPD FM RV+ D +WSL CP
Sbjct: 220 GPFAVYLEPWHADIFEFLKIQKNHGKVQNSQEEHMAIALWIPDLFMERVKHDGKWSLFCP 279

Query: 62  NACRGLSDSWGEKFDDLYKKYEAEG 86
           N   GL+D WG +F+ LY KYE EG
Sbjct: 280 NEAPGLADCWGTEFERLYTKYEREG 304



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query: 686 WFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +F IL SQ+ETG PYML+KD+CNRKSNQQNL  I+
Sbjct: 316 FFDILTSQLETGMPYMLFKDSCNRKSNQQNLGTIK 350


>gi|380863076|gb|AFF18831.1| ribonucleotide reductase large subunit A, partial [Dimocarpus
           longan]
          Length = 421

 Score =  574 bits (1479), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/421 (65%), Positives = 330/421 (78%), Gaps = 18/421 (4%)

Query: 114 KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYE 173
           KN GKEE RARDLFY LW+PD FM RV+S+  WSL CPN   GL+D WG +F+ LY  YE
Sbjct: 1   KNHGKEEHRARDLFYALWVPDLFMERVQSNGVWSLFCPNEAPGLADCWGAEFERLYTHYE 60

Query: 174 AEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEY 233
            EGK  + V A+ LWF IL SQIETGTPYML+KD CNRKSNQQNLGTIK SNLCTEI+EY
Sbjct: 61  REGKAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEY 120

Query: 234 TSKDEVAVCNLASIALNMYI---------NPA---------DKTYNFTKLKDVAKIVTKN 275
           TS  E AVCNLASIAL  Y+         +P+         ++ ++F KL +V  IVT+N
Sbjct: 121 TSPTETAVCNLASIALPRYVREKGIPMESHPSKLVGSRGSKNRYFDFEKLAEVTAIVTEN 180

Query: 276 LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIY 335
           LNKIIDVN+YPVE A+ SNMRHRPIGIGVQGLAD FI + + FD  E++ LNK IFETIY
Sbjct: 181 LNKIIDVNYYPVENAKRSNMRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIY 240

Query: 336 YGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS 395
           Y AL+AS E+AA++G Y+TYEGSPVS+GILQ DMWG TP++ WDW AL++ I K+GVRNS
Sbjct: 241 YHALKASAEMAAKEGSYETYEGSPVSKGILQPDMWGATPSNRWDWGALRDMITKNGVRNS 300

Query: 396 LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMK 455
           LL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGEF VVN HLL DL E+GLW   +K
Sbjct: 301 LLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPAVK 360

Query: 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEIN 515
           +++I N+GS+Q I  +P++LK +YKTVWEI QKT++DMA DRG +IDQSQSLNI+M + N
Sbjct: 361 NKIIYNDGSVQKIPEVPEELKGIYKTVWEIKQKTLVDMAVDRGCYIDQSQSLNIHMDQPN 420

Query: 516 Y 516
           +
Sbjct: 421 F 421



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 126/149 (84%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           DMWG TP++ WDW AL++ I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 273 DMWGATPSNRWDWGALRDMITKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 332

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
           VLSGEF VVN HLL DL E+GLW   +K+++I N+GS+Q I  +P++LK +YKTVWEI Q
Sbjct: 333 VLSGEFVVVNKHLLHDLTEMGLWSPAVKNKIIYNDGSVQKIPEVPEELKGIYKTVWEIKQ 392

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINY 920
           KT++DMA DRG +IDQSQSLNI+M + N+
Sbjct: 393 KTLVDMAVDRGCYIDQSQSLNIHMDQPNF 421



 Score =  123 bits (309), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 12/158 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI + + FD  E++ LNK IFETIYY AL+AS E+AA++G Y+TYEGSPVS
Sbjct: 207 IGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALKASAEMAAKEGSYETYEGSPVS 266

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
           +GILQ DMWG TP++ WDW AL+ +    G++   ++L + + T  T  +L  + C    
Sbjct: 267 KGILQPDMWGATPSNRWDWGALRDMITKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 324

Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDK 740
            SN  +  V+   + +VNK       E G  +P + +K
Sbjct: 325 TSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPAVKNK 362



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 46/63 (73%)

Query: 24 KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE 83
          KN GKEE RARDLFY LW+PD FM RV+S+  WSL CPN   GL+D WG +F+ LY  YE
Sbjct: 1  KNHGKEEHRARDLFYALWVPDLFMERVQSNGVWSLFCPNEAPGLADCWGAEFERLYTHYE 60

Query: 84 AEG 86
           EG
Sbjct: 61 REG 63



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/46 (67%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K   +V    LWF IL SQIETGTPYML+KD CNRKSNQQNL  I+
Sbjct: 64  KAKKVVQAQNLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIK 109


>gi|154269831|ref|XP_001535822.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
 gi|150409470|gb|EDN04916.1| hypothetical protein HCAG_09248 [Ajellomyces capsulatus NAm1]
          Length = 524

 Score =  573 bits (1478), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 329/421 (78%), Gaps = 17/421 (4%)

Query: 139 RVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIET 198
           RVE + +W+L CPN   GL+D +G++F+ LY+KYE EG+  + V A+KLW+AIL++Q ET
Sbjct: 1   RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEKEGRGKKTVKAQKLWYAILEAQTET 60

Query: 199 GTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK 258
           G P+MLYKD+CNRKSNQ+NLGTI+ SNLCTEI+EY S DEVAVCNLASIAL  +++P   
Sbjct: 61  GNPFMLYKDSCNRKSNQKNLGTIRSSNLCTEIIEYCSPDEVAVCNLASIALPTFVDPIRG 120

Query: 259 TYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPF 318
            Y+F KL +V ++V +NLNKIID N+YPVEEA+ SN RHRPI  GVQGLAD F+ +RLPF
Sbjct: 121 EYDFGKLHEVTQVVVRNLNKIIDRNYYPVEEAKRSNFRHRPIACGVQGLADAFLALRLPF 180

Query: 319 DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW 378
           D  E++ LN QIFETIY+  L ASCE+A  DGPY TYEGSPVSQGILQYDMW VTPTDLW
Sbjct: 181 DSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQGILQYDMWNVTPTDLW 240

Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438
           DW +LK+ IAKHG                 ILG NE FEPYTSNIYSRRVL+GEFQ+VN 
Sbjct: 241 DWDSLKQDIAKHG-----------------ILGFNECFEPYTSNIYSRRVLAGEFQIVNP 283

Query: 439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 498
            LL+DLV++GLW DNMK+++I   GSIQ+I  IPQ +K LYKTVWEI Q+T++ MAADRG
Sbjct: 284 WLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWEISQRTIVQMAADRG 343

Query: 499 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
           AFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+  IQFT+D+ ++  
Sbjct: 344 AFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAASAPIQFTVDQEQLKV 403

Query: 559 A 559
           A
Sbjct: 404 A 404



 Score =  255 bits (652), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 147/195 (75%), Gaps = 17/195 (8%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDLWDW +LK+ IAKHG                 ILG NE FEPYTSNIY
Sbjct: 227 LQYDMWNVTPTDLWDWDSLKQDIAKHG-----------------ILGFNECFEPYTSNIY 269

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVL+GEFQ+VN  LL+DLV++GLW DNMK+++I   GSIQ+I  IPQ +K LYKTVWE
Sbjct: 270 SRRVLAGEFQIVNPWLLKDLVDMGLWSDNMKNRIIAEGGSIQNIPNIPQDIKALYKTVWE 329

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I Q+T++ MAADRGAFIDQSQSLNI++ E    K++SMHF GWKLGLKTGMYYLRT  A+
Sbjct: 330 ISQRTIVQMAADRGAFIDQSQSLNIHLKEPTMGKITSMHFTGWKLGLKTGMYYLRTMAAS 389

Query: 949 NAIQFTIDKTKMANA 963
             IQFT+D+ ++  A
Sbjct: 390 APIQFTVDQEQLKVA 404



 Score =  136 bits (343), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 68/82 (82%)

Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ 653
           GVQGLAD F+ +RLPFD  E++ LN QIFETIY+  L ASCE+A  DGPY TYEGSPVSQ
Sbjct: 165 GVQGLADAFLALRLPFDSPEAKQLNIQIFETIYHAGLTASCELAKVDGPYSTYEGSPVSQ 224

Query: 654 GILQYDMWGVTPTDLWDWAALK 675
           GILQYDMW VTPTDLWDW +LK
Sbjct: 225 GILQYDMWNVTPTDLWDWDSLK 246



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 33/40 (82%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           V   KLW+AIL++Q ETG P+MLYKD+CNRKSNQ+NL  I
Sbjct: 44  VKAQKLWYAILEAQTETGNPFMLYKDSCNRKSNQKNLGTI 83



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 49 RVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEG 86
          RVE + +W+L CPN   GL+D +G++F+ LY+KYE EG
Sbjct: 1  RVEKNGEWTLFCPNEAPGLADVYGDEFEALYEKYEKEG 38


>gi|451927339|gb|AGF85217.1| reductase large subunit [Moumouvirus goulette]
          Length = 847

 Score =  571 bits (1472), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/518 (52%), Positives = 372/518 (71%), Gaps = 12/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAI++EPWHGDIF FL+LKKNTG E  R RDLF GL I + FM RVE D +WSLMC
Sbjct: 331 RAGSFAIFIEPWHGDIFFFLDLKKNTGAETERTRDLFLGLMINNIFMDRVEKDEKWSLMC 390

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +GE+F+  Y KYE EGKF +Q+ AR+LWF I+++QIETG PY+LYKDA N
Sbjct: 391 PSQCPDIVGKYGEEFNKAYLKYETEGKFTKQIKARELWFKIMETQIETGVPYILYKDAIN 450

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI---NPADKTYNFTKLKD 267
            KSNQ N+G I  SNLCTEIVEY+S DE AVCNL+SI L  +I   N + K +++ KL  
Sbjct: 451 EKSNQINIGVINGSNLCTEIVEYSSADEYAVCNLSSICLPKFIIHDNDSPK-FDYDKLYK 509

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           +A+I+T+NLN IID+N+YPV++   SN+RHRPIGIGVQGLAD+F   + PFD + +R LN
Sbjct: 510 IARIITRNLNNIIDINYYPVDKTLVSNLRHRPIGIGVQGLADVFALFKTPFDSDIARDLN 569

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALK 384
           ++IFETIY+GA+  S ++A   GPY+T+ GSP+S+G  Q+D+W ++   L   WDW  L+
Sbjct: 570 RKIFETIYFGAMTESLQMAKEFGPYETFWGSPLSKGKFQFDLWNISANKLSGMWDWETLR 629

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           ++I  HGVRNSL    MPTAST+QI G NE  EP+T NIYSR  L+G++ V+N +L++DL
Sbjct: 630 KEIMIHGVRNSLTTTCMPTASTSQIKGYNECIEPFTENIYSRSTLAGDYYVINKYLIQDL 689

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           +ELGLW+ +M D +    GSI +I  IPQ +K++Y+TVWEIPQK++++MAADR  F+DQ+
Sbjct: 690 MELGLWNSDMVDLIKYYQGSIANISTIPQNIKEIYRTVWEIPQKSIIEMAADRAPFVDQT 749

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
           QS+NI++ + ++ K++S  F+ ++LGLKTGMYYLR KPA++A QF ID  K+    A  +
Sbjct: 750 QSMNIFIEKPDFIKLNSCLFYAYRLGLKTGMYYLRGKPASSANQFGIDIEKIKEIEAKNN 809

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKE-----DCIGVQG 597
             S+ +    +E+     IC+   K      DC    G
Sbjct: 810 ITSRVQNTIIEEEPTVLRICQYVPKHLRKPGDCFSCDG 847



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 158/224 (70%), Gaps = 3/224 (1%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++   L   WDW  L+++I  HGVRNSL    MPTAST+QI G NE  EP+T 
Sbjct: 607 FQFDLWNISANKLSGMWDWETLRKEIMIHGVRNSLTTTCMPTASTSQIKGYNECIEPFTE 666

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL+ELGLW+ +M D +    GSI +I  IPQ +K++Y+T
Sbjct: 667 NIYSRSTLAGDYYVINKYLIQDLMELGLWNSDMVDLIKYYQGSIANISTIPQNIKEIYRT 726

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAADR  F+DQ+QS+NI++ + ++ K++S  F+ ++LGLKTGMYYLR K
Sbjct: 727 VWEIPQKSIIEMAADRAPFVDQTQSMNIFIEKPDFIKLNSCLFYAYRLGLKTGMYYLRGK 786

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
           PA++A QF ID  K+    A  +  S+ +    +E+     IC+
Sbjct: 787 PASSANQFGIDIEKIKEIEAKNNITSRVQNTIIEEEPTVLRICQ 830



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAI++EPWHGDIF FL+LKKNTG E  R RDLF GL I + FM RVE D +WSLMC
Sbjct: 331 RAGSFAIFIEPWHGDIFFFLDLKKNTGAETERTRDLFLGLMINNIFMDRVEKDEKWSLMC 390

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +GE+F+  Y KYE EG
Sbjct: 391 PSQCPDIVGKYGEEFNKAYLKYETEG 416



 Score =  100 bits (249), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F   + PFD + +R LN++IFETIY+GA+  S ++A   GPY+T+ GSP+S
Sbjct: 544 IGVQGLADVFALFKTPFDSDIARDLNRKIFETIYFGAMTESLQMAKEFGPYETFWGSPLS 603

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           +G  Q+D+W ++   L   WDW  L+   +++G++
Sbjct: 604 KGKFQFDLWNISANKLSGMWDWETLRKEIMIHGVR 638



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           +LWF I+++QIETG PY+LYKDA N KSNQ N+ VI
Sbjct: 426 ELWFKIMETQIETGVPYILYKDAINEKSNQINIGVI 461


>gi|384498832|gb|EIE89323.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhizopus
           delemar RA 99-880]
          Length = 745

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 266/508 (52%), Positives = 350/508 (68%), Gaps = 15/508 (2%)

Query: 93  GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 152
           G FA+Y+EPWH DIF+F+EL +  G+E  RAR L  GLWIPD FM+RVE +  WSLMCPN
Sbjct: 250 GTFAVYVEPWHADIFEFIELSRQNGEENLRARHLLLGLWIPDLFMKRVEENGDWSLMCPN 309

Query: 153 TCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRK 212
            C GL  S+GE F++LY +YE  GK  + V A+KLWF+ILD+QIE+G P+M YKDA NRK
Sbjct: 310 ECPGLDVSYGEAFEELYIRYEKAGKARKTVSAQKLWFSILDTQIESGMPFMCYKDAANRK 369

Query: 213 SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIV 272
           SNQ+NLG I  S      ++Y   +E+  CN+ASIAL+  ++   +++NF  L D+ KIV
Sbjct: 370 SNQKNLGVITGSTFYANTMQYADAEEIGSCNVASIALSKCVDTNTRSFNFEVLADIVKIV 429

Query: 273 TKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFE 332
            KNL+K+IDVN Y  EE +NS ++HR + +GVQGLAD+F+ MR PFD +E+R LNK IFE
Sbjct: 430 VKNLDKMIDVNNYVSEETKNSALKHRGLSLGVQGLADVFLMMRYPFDSDEARQLNKDIFE 489

Query: 333 TIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGV 392
            IY+ ALEAS E+A   GPY +YEGSP+SQGILQ+D+W V  +D   W  L+ KI  HGV
Sbjct: 490 HIYFAALEASNELAQASGPYPSYEGSPISQGILQHDLWNVKGSDCLKWDDLRAKIKAHGV 549

Query: 393 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDD 452
           RNSLL+APMPT +T+  LGN++  EPY S +Y+R   S +  V+N HL+ DL+E G+W  
Sbjct: 550 RNSLLVAPMPTTATSVCLGNSDGIEPYKSMLYTRPAHSRDRHVINPHLVGDLIERGIWSP 609

Query: 453 NMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA 512
            +KD L+ +NGSIQ+I  IP  LK LYKT WEIPQ+ ++D+AADR  FIDQSQSLN++ A
Sbjct: 610 KIKDMLLKDNGSIQNIAIIPDDLKKLYKTAWEIPQRVIIDLAADRAPFIDQSQSLNLFSA 669

Query: 513 EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQ 572
           E NY ++SSMHF+ WK GLKTGM YLRT P    +            +   +  + E + 
Sbjct: 670 EPNYGRLSSMHFYAWKKGLKTGMQYLRTNPHELVV------------INENEKETAENVD 717

Query: 573 ADQEQA---MAAMICRRDNKEDCIGVQG 597
            + E+    +AAM C  DN E C+   G
Sbjct: 718 QEVEKTANNLAAMSCSLDNPESCVSCSG 745



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 109/232 (46%), Positives = 148/232 (63%), Gaps = 15/232 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W V  +D   W  L+ KI  HGVRNSLL+APMPT +T+  LGN++  EPY S +Y
Sbjct: 522 LQHDLWNVKGSDCLKWDDLRAKIKAHGVRNSLLVAPMPTTATSVCLGNSDGIEPYKSMLY 581

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +R   S +  V+N HL+ DL+E G+W   +KD L+ +NGSIQ+I  IP  LK LYKT WE
Sbjct: 582 TRPAHSRDRHVINPHLVGDLIERGIWSPKIKDMLLKDNGSIQNIAIIPDDLKKLYKTAWE 641

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQ+ ++D+AADR  FIDQSQSLN++ AE NY ++SSMHF+ WK GLKTGM YLRT P  
Sbjct: 642 IPQRVIIDLAADRAPFIDQSQSLNLFSAEPNYGRLSSMHFYAWKKGLKTGMQYLRTNPHE 701

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA---MAAMICRRDNKEDCL 997
             +            +   +  + E +  + E+    +AAM C  DN E C+
Sbjct: 702 LVV------------INENEKETAENVDQEVEKTANNLAAMSCSLDNPESCV 741



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 62/84 (73%)

Query: 3   GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 62
           G FA+Y+EPWH DIF+F+EL +  G+E  RAR L  GLWIPD FM+RVE +  WSLMCPN
Sbjct: 250 GTFAVYVEPWHADIFEFIELSRQNGEENLRARHLLLGLWIPDLFMKRVEENGDWSLMCPN 309

Query: 63  ACRGLSDSWGEKFDDLYKKYEAEG 86
            C GL  S+GE F++LY +YE  G
Sbjct: 310 ECPGLDVSYGEAFEELYIRYEKAG 333



 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 67/92 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F+ MR PFD +E+R LNK IFE IY+ ALEAS E+A   GPY +YEGSP+S
Sbjct: 459 LGVQGLADVFLMMRYPFDSDEARQLNKDIFEHIYFAALEASNELAQASGPYPSYEGSPIS 518

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ+D+W V  +D   W  L+     +G++
Sbjct: 519 QGILQHDLWNVKGSDCLKWDDLRAKIKAHGVR 550



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 35/47 (74%)

Query: 673 ALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           A K    V   KLWF+ILD+QIE+G P+M YKDA NRKSNQ+NL VI
Sbjct: 332 AGKARKTVSAQKLWFSILDTQIESGMPFMCYKDAANRKSNQKNLGVI 378



 Score = 46.2 bits (108), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 709 RKSNQQNLE-VIEELYN-MVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNF 766
           +K   +N   V++ LYN   + +TG   P+++ +  +++ ++A+++NS I Y RDF +++
Sbjct: 41  QKETHENFSNVVKALYNDNTHPKTGAANPIVTKEFVKLVDEHAEKINSVIDYKRDFYFDY 100

Query: 767 FGFK 770
           FGFK
Sbjct: 101 FGFK 104


>gi|371944844|gb|AEX62665.1| ribonucleoside-diphosphate reductase large subunit [Moumouvirus
           Monve]
          Length = 849

 Score =  569 bits (1466), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 272/518 (52%), Positives = 374/518 (72%), Gaps = 12/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+++EPWHGDIF FL+LKKNTG E  RARDLF GL I + FM RVE D  WSLMC
Sbjct: 333 RAGSFAVFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINNIFMDRVEKDENWSLMC 392

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +GE+F+  Y KYE EG+FI+Q+ AR LWF I+++QIETG PY+L+KDA N
Sbjct: 393 PSQCPDIVGKYGEEFNKAYLKYENEGRFIKQIKARDLWFKIMETQIETGVPYILFKDAIN 452

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +KSNQ N+G I  SNLC EIVE++S DE AVCNL+SI L  +I   +    +++ KL  V
Sbjct: 453 QKSNQINIGVINGSNLCCEIVEFSSADEYAVCNLSSICLPKFIIHENGVPEFDYNKLYKV 512

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A+I+T+NLN IIDVN+YPVE+ R SN+RHRPIG+GVQGLAD+F   ++PFD + +R LNK
Sbjct: 513 ARIITRNLNNIIDVNYYPVEKTRVSNLRHRPIGVGVQGLADVFAIFKIPFDSDIARDLNK 572

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G +  S ++A   GPY+T+ GSP+S+G  Q+D+W ++    + +WDW  L+E
Sbjct: 573 KIFETIYFGTMTESLQMAKESGPYETFWGSPLSKGKFQFDLWNLSEDKLSGMWDWKTLRE 632

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I  +GVRNSL    MPTAST+QI G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 633 QIMIYGVRNSLTTTCMPTASTSQIKGYNECIEPFTENIYSRSTLAGDYYVINKYLIKDLM 692

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           ELGLW+ +M D +    GSI +I  IPQ +K++Y+TVWEIPQ++++DMAADR  FIDQ+Q
Sbjct: 693 ELGLWNSDMVDLIKYYQGSIANIPNIPQNIKNIYRTVWEIPQQSIIDMAADRAPFIDQTQ 752

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           S+NI++ + ++ K++S  F+ ++ GLKTGMYYLR KPA++A QF ID  K+    A  + 
Sbjct: 753 SMNIFIEKPDFVKLNSCLFYAYRKGLKTGMYYLRGKPASSANQFGIDIEKIKEIEAKNNI 812

Query: 566 RSQ-EEIQADQEQAMAAMICRRDNKE-----DCIGVQG 597
           + + + I  DQE  M   IC+   K      DC+   G
Sbjct: 813 KIRVQNIIIDQE-PMQLRICQYVPKHLRKPGDCLSCDG 849



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/238 (47%), Positives = 164/238 (68%), Gaps = 10/238 (4%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++    + +WDW  L+E+I  +GVRNSL    MPTAST+QI G NE  EP+T 
Sbjct: 609 FQFDLWNLSEDKLSGMWDWKTLREQIMIYGVRNSLTTTCMPTASTSQIKGYNECIEPFTE 668

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL+ELGLW+ +M D +    GSI +I  IPQ +K++Y+T
Sbjct: 669 NIYSRSTLAGDYYVINKYLIKDLMELGLWNSDMVDLIKYYQGSIANIPNIPQNIKNIYRT 728

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQ++++DMAADR  FIDQ+QS+NI++ + ++ K++S  F+ ++ GLKTGMYYLR K
Sbjct: 729 VWEIPQQSIIDMAADRAPFIDQTQSMNIFIEKPDFVKLNSCLFYAYRKGLKTGMYYLRGK 788

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQ-EEIQADQEQAMAAMICRRDNKE-----DCL 997
           PA++A QF ID  K+    A  + + + + I  DQE  M   IC+   K      DCL
Sbjct: 789 PASSANQFGIDIEKIKEIEAKNNIKIRVQNIIIDQE-PMQLRICQYVPKHLRKPGDCL 845



 Score =  117 bits (294), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+++EPWHGDIF FL+LKKNTG E  RARDLF GL I + FM RVE D  WSLMC
Sbjct: 333 RAGSFAVFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINNIFMDRVEKDENWSLMC 392

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +GE+F+  Y KYE EG
Sbjct: 393 PSQCPDIVGKYGEEFNKAYLKYENEG 418



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 68/95 (71%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F   ++PFD + +R LNK+IFETIY+G +  S ++A   GPY+T+ GSP+S
Sbjct: 546 VGVQGLADVFAIFKIPFDSDIARDLNKKIFETIYFGTMTESLQMAKESGPYETFWGSPLS 605

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W ++    + +WDW  L+   ++YG++
Sbjct: 606 KGKFQFDLWNLSEDKLSGMWDWKTLREQIMIYGVR 640



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+L+KDA N+KSNQ N+ VI
Sbjct: 429 LWFKIMETQIETGVPYILFKDAINQKSNQINIGVI 463



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +N+  L+V+  +   +NK  G R P++S   Y+ ++K+ D++N  + Y+RD++ + FG++
Sbjct: 132 TNEDYLKVVTMMRKNINK-NGKRAPIVSKDFYKFVLKHNDKINEQLKYERDYDISIFGYR 190


>gi|410084533|ref|XP_003959843.1| hypothetical protein KAFR_0L01000 [Kazachstania africana CBS 2517]
 gi|372466436|emb|CCF60708.1| hypothetical protein KAFR_0L01000 [Kazachstania africana CBS 2517]
          Length = 885

 Score =  567 bits (1461), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 257/460 (55%), Positives = 342/460 (74%), Gaps = 5/460 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGA A+Y+EPWH DIFDF+++KK +GK+E RARDL   LW+PD FM+RV  D  W+L  
Sbjct: 293 RPGAVAMYIEPWHADIFDFIDVKKTSGKDEIRARDLLPALWVPDLFMQRVHEDGDWTLFS 352

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL D +G++FD LY +YE EG+  + + A+KLW+ IL++Q +   P M+YKD CN
Sbjct: 353 PSAAPGLVDVYGDEFDALYTRYEREGRG-KTIKAQKLWYCILEAQNDCSAPIMVYKDPCN 411

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
           +KSNQ+NLGTIK SNL  ++V Y+   E    N+AS+AL  +I  ++     TYNF KL 
Sbjct: 412 KKSNQKNLGTIKSSNLSGDVVVYSDAKETPASNMASLALPAFIEISEDGKTSTYNFKKLH 471

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
           D+ KIVT+NLN IID N YPV EAR + ++HRPI IGVQGLAD F+ +RL FD  E++LL
Sbjct: 472 DITKIVTRNLNVIIDRNTYPVPEARRATLKHRPIAIGVQGLADTFMTLRLAFDSAEAQLL 531

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
           N+QIFETIY+ +LEAS E+A +DGPYQ++ GSP S+GILQ D+W   P+ +WDW AL++ 
Sbjct: 532 NQQIFETIYHASLEASVELAKKDGPYQSFNGSPSSRGILQMDLWDAKPSGVWDWDALRKD 591

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           I ++G+RNSL  A MPT+ST+QILG  E FEP +SN+Y  RVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMEYGLRNSLTTAAMPTSSTSQILGYTECFEPISSNMYQHRVLSGEFQVVNPYLLRDLVD 651

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD+ MK  ++  NGSIQ +  +PQ+LK +YKT WEI QK ++DMA DR  +IDQSQS
Sbjct: 652 LGIWDETMKQHIVSQNGSIQALPNVPQELKAIYKTAWEISQKKIIDMATDRAIYIDQSQS 711

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           L++++      K++SMHF+GW  GLKTGMY L ++P A A
Sbjct: 712 LSLFLRATTMGKITSMHFYGWNKGLKTGMYKLNSQPVAAA 751



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/182 (55%), Positives = 136/182 (74%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + D+W   P+ +WDW AL++ I ++G+RNSL  A MPT+ST+QILG  E FEP +SN+Y
Sbjct: 570 LQMDLWDAKPSGVWDWDALRKDIMEYGLRNSLTTAAMPTSSTSQILGYTECFEPISSNMY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
             RVLSGEFQVVN +LLRDLV+LG+WD+ MK  ++  NGSIQ +  +PQ+LK +YKT WE
Sbjct: 630 QHRVLSGEFQVVNPYLLRDLVDLGIWDETMKQHIVSQNGSIQALPNVPQELKAIYKTAWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I QK ++DMA DR  +IDQSQSL++++      K++SMHF+GW  GLKTGMY L ++P A
Sbjct: 690 ISQKKIIDMATDRAIYIDQSQSLSLFLRATTMGKITSMHFYGWNKGLKTGMYKLNSQPVA 749

Query: 949 NA 950
            A
Sbjct: 750 AA 751



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 72/93 (77%)

Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
            IGVQGLAD F+ +RL FD  E++LLN+QIFETIY+ +LEAS E+A +DGPYQ++ GSP 
Sbjct: 506 AIGVQGLADTFMTLRLAFDSAEAQLLNQQIFETIYHASLEASVELAKKDGPYQSFNGSPS 565

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           S+GILQ D+W   P+ +WDW AL+   + YGL+
Sbjct: 566 SRGILQMDLWDAKPSGVWDWDALRKDIMEYGLR 598



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 65/86 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGA A+Y+EPWH DIFDF+++KK +GK+E RARDL   LW+PD FM+RV  D  W+L  
Sbjct: 293 RPGAVAMYIEPWHADIFDFIDVKKTSGKDEIRARDLLPALWVPDLFMQRVHEDGDWTLFS 352

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+A  GL D +G++FD LY +YE EG
Sbjct: 353 PSAAPGLVDVYGDEFDALYTRYEREG 378



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q I+     GVT ++L + AA +  A +  L   +  L +++             +++
Sbjct: 39  VTQRIITGVYEGVTTSELDNLAA-ETCAFMTTLHPDYGQLAARLAISN--------LHKQ 89

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           + +Q  +V+E+L+  VN   G   P++S++  +I+  + D +NSAI+YDRD+ + +FGFK
Sbjct: 90  TTKQFSKVVEDLHAYVNPRNGRHAPLVSEELLQIVKDHKDEINSAIVYDRDYQFTYFGFK 149



 Score = 50.1 bits (118), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 28/37 (75%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+ IL++Q +   P M+YKD CN+KSNQ+NL  I+
Sbjct: 387 KLWYCILEAQNDCSAPIMVYKDPCNKKSNQKNLGTIK 423


>gi|441432444|ref|YP_007354486.1| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           moumouvirus]
 gi|440383524|gb|AGC02050.1| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           moumouvirus]
          Length = 849

 Score =  567 bits (1461), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/518 (52%), Positives = 373/518 (72%), Gaps = 12/518 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+++EPWHGDIF FL+LKKNTG E  RARDLF GL I + FM RVE D  WSLMC
Sbjct: 333 RAGSFAVFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINNIFMDRVEKDENWSLMC 392

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +GE+F+  Y KYE EG+FI+Q+ AR LWF I+++QIETG PY+L+KDA N
Sbjct: 393 PSQCPDIVGKYGEEFNKAYLKYENEGRFIKQIKARDLWFKIMETQIETGVPYILFKDAIN 452

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
           +KSNQ N+G I  SNLC EIVE++S DE AVCNL+SI L  +I   +    +++ KL  V
Sbjct: 453 QKSNQINIGVINGSNLCCEIVEFSSADEYAVCNLSSICLPKFIIHENGVPEFDYNKLYKV 512

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A+I+T+NLN IIDVN+YPVE+ R SN+RHRPIG+GVQGLAD+F   ++PFD + +R LN+
Sbjct: 513 ARIITRNLNNIIDVNYYPVEKTRVSNLRHRPIGVGVQGLADVFAIFKIPFDSDIARDLNR 572

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G +  S ++A   GPY+T+ GSP+S+G  Q+D+W +     + +WDW  L+E
Sbjct: 573 KIFETIYFGTMTESLQMAKESGPYETFWGSPLSKGKFQFDLWNLGEDKLSGMWDWKTLRE 632

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I  +GVRNSL    MPTAST+QI G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 633 QIMIYGVRNSLTTTCMPTASTSQIKGYNECIEPFTENIYSRSTLAGDYYVINKYLIKDLM 692

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           ELGLW+ +M D +    GSI +I  IPQ +K++Y+TVWEIPQ++++DMAADR  FIDQ+Q
Sbjct: 693 ELGLWNSDMVDLIKYYQGSIANIPNIPQNIKNIYRTVWEIPQQSIIDMAADRAPFIDQTQ 752

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           S+NI++ + ++ K++S  F+ ++ GLKTGMYYLR KPA++A QF ID  K+    A  + 
Sbjct: 753 SMNIFIEKPDFVKLNSCLFYAYRKGLKTGMYYLRGKPASSANQFGIDIEKIKEIEAKNNI 812

Query: 566 RSQ-EEIQADQEQAMAAMICRRDNKE-----DCIGVQG 597
           + + + I  DQE  M   IC+   K      DC+   G
Sbjct: 813 KIRVQNIIIDQE-PMQLRICQYVPKHLRKPGDCLSCDG 849



 Score =  226 bits (575), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 112/238 (47%), Positives = 163/238 (68%), Gaps = 10/238 (4%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W +     + +WDW  L+E+I  +GVRNSL    MPTAST+QI G NE  EP+T 
Sbjct: 609 FQFDLWNLGEDKLSGMWDWKTLREQIMIYGVRNSLTTTCMPTASTSQIKGYNECIEPFTE 668

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL+ELGLW+ +M D +    GSI +I  IPQ +K++Y+T
Sbjct: 669 NIYSRSTLAGDYYVINKYLIKDLMELGLWNSDMVDLIKYYQGSIANIPNIPQNIKNIYRT 728

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQ++++DMAADR  FIDQ+QS+NI++ + ++ K++S  F+ ++ GLKTGMYYLR K
Sbjct: 729 VWEIPQQSIIDMAADRAPFIDQTQSMNIFIEKPDFVKLNSCLFYAYRKGLKTGMYYLRGK 788

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQ-EEIQADQEQAMAAMICRRDNKE-----DCL 997
           PA++A QF ID  K+    A  + + + + I  DQE  M   IC+   K      DCL
Sbjct: 789 PASSANQFGIDIEKIKEIEAKNNIKIRVQNIIIDQE-PMQLRICQYVPKHLRKPGDCL 845



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+++EPWHGDIF FL+LKKNTG E  RARDLF GL I + FM RVE D  WSLMC
Sbjct: 333 RAGSFAVFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINNIFMDRVEKDENWSLMC 392

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +GE+F+  Y KYE EG
Sbjct: 393 PSQCPDIVGKYGEEFNKAYLKYENEG 418



 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 67/95 (70%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F   ++PFD + +R LN++IFETIY+G +  S ++A   GPY+T+ GSP+S
Sbjct: 546 VGVQGLADVFAIFKIPFDSDIARDLNRKIFETIYFGTMTESLQMAKESGPYETFWGSPLS 605

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W +     + +WDW  L+   ++YG++
Sbjct: 606 KGKFQFDLWNLGEDKLSGMWDWKTLREQIMIYGVR 640



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+L+KDA N+KSNQ N+ VI
Sbjct: 429 LWFKIMETQIETGVPYILFKDAINQKSNQINIGVI 463



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +N+  L+V+  +   +NK  G R P++S   Y+ ++K+ D++N  + Y+RD++ + FG++
Sbjct: 132 TNEDYLKVVTMMRKNINK-NGKRAPIVSKDFYKFVLKHNDKINEQLKYERDYDISIFGYR 190


>gi|307205346|gb|EFN83694.1| Ribonucleoside-diphosphate reductase large subunit [Harpegnathos
           saltator]
          Length = 701

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/456 (58%), Positives = 337/456 (73%), Gaps = 1/456 (0%)

Query: 93  GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 152
           G   +YLEPWH DI+ FLELK++ G E+ RA+D+FY LW PD FMRRV  DA WSLMCP+
Sbjct: 243 GPITVYLEPWHSDIYQFLELKRDIGDEQLRAKDMFYALWTPDIFMRRVFDDADWSLMCPH 302

Query: 153 TCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRK 212
            C GL D WG++F+ LY +YE E ++ +QV AR LW  I   QI+TGTPY++YKD CN K
Sbjct: 303 ECPGLIDVWGDEFEALYIRYEEENRYRKQVKARDLWVFITQLQIQTGTPYIVYKDHCNLK 362

Query: 213 SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIV 272
           SNQQNLGTI C +  TE+++Y++ DE+A C+LA+IA++M++N   KTY+F+KLK V KIV
Sbjct: 363 SNQQNLGTINCGSFSTEVIQYSASDEIAACHLATIAVDMFVNSTTKTYDFSKLKKVVKIV 422

Query: 273 TKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFE 332
           T NL+K+IDVN YP+EE   S  R R IGI   GLAD FI MR PF+  E++ LN QIFE
Sbjct: 423 TYNLDKMIDVNLYPLEEVTFSAYRQRAIGISASGLADAFILMRYPFESKEAKKLNVQIFE 482

Query: 333 TIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGV 392
           T YYGALEASCE+A  DGPY TYEGSPVS+GILQY+MW   PTDLWDW  LK KIAK+GV
Sbjct: 483 TFYYGALEASCEMAIEDGPYATYEGSPVSKGILQYEMWNAKPTDLWDWDTLKAKIAKYGV 542

Query: 393 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDD 452
           RNSLLIA       AQ+LGNNES  PYTSNI +    S  F  V  HLLRDL+E GLW +
Sbjct: 543 RNSLLIAQTSDTFMAQMLGNNESVGPYTSNICTMHASSKLFPYVKKHLLRDLIEKGLWSE 602

Query: 453 NMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA 512
           +M +++I N GSIQDI+ IP  LK LYKT WE+PQK + +MAA RG FIDQSQ LN++M 
Sbjct: 603 DMCNKIISNGGSIQDIDDIPDDLKLLYKTAWEMPQKRIFEMAAARGPFIDQSQCLNVHMK 662

Query: 513 EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
           + +  K++SMHF+ W++GLK+ MY+ +T+   N  Q
Sbjct: 663 DPS-DKLTSMHFYAWEIGLKSSMYHFKTEDFTNCTQ 697



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 130/184 (70%), Gaps = 1/184 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y+MW   PTDLWDW  LK KIAK+GVRNSLLIA       AQ+LGNNES  PYTSNI 
Sbjct: 515 LQYEMWNAKPTDLWDWDTLKAKIAKYGVRNSLLIAQTSDTFMAQMLGNNESVGPYTSNIC 574

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +    S  F  V  HLLRDL+E GLW ++M +++I N GSIQDI+ IP  LK LYKT WE
Sbjct: 575 TMHASSKLFPYVKKHLLRDLIEKGLWSEDMCNKIISNGGSIQDIDDIPDDLKLLYKTAWE 634

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQK + +MAA RG FIDQSQ LN++M + +  K++SMHF+ W++GLK+ MY+ +T+   
Sbjct: 635 MPQKRIFEMAAARGPFIDQSQCLNVHMKDPS-DKLTSMHFYAWEIGLKSSMYHFKTEDFT 693

Query: 949 NAIQ 952
           N  Q
Sbjct: 694 NCTQ 697



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/92 (65%), Positives = 68/92 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           I   GLAD FI MR PF+  E++ LN QIFET YYGALEASCE+A  DGPY TYEGSPVS
Sbjct: 452 ISASGLADAFILMRYPFESKEAKKLNVQIFETFYYGALEASCEMAIEDGPYATYEGSPVS 511

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GILQY+MW   PTDLWDW  LK     YG++
Sbjct: 512 KGILQYEMWNAKPTDLWDWDTLKAKIAKYGVR 543



 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 62/83 (74%)

Query: 3   GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 62
           G   +YLEPWH DI+ FLELK++ G E+ RA+D+FY LW PD FMRRV  DA WSLMCP+
Sbjct: 243 GPITVYLEPWHSDIYQFLELKRDIGDEQLRAKDMFYALWTPDIFMRRVFDDADWSLMCPH 302

Query: 63  ACRGLSDSWGEKFDDLYKKYEAE 85
            C GL D WG++F+ LY +YE E
Sbjct: 303 ECPGLIDVWGDEFEALYIRYEEE 325



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           EVI +LY+        R P IS+K+Y II ++ADRLNSAIIYDRDFNY++  FK
Sbjct: 46  EVITQLYHGNLSIMNRRLPRISEKYYTIIQEHADRLNSAIIYDRDFNYSYTAFK 99



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 26/35 (74%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LW  I   QI+TGTPY++YKD CN KSNQQNL  I
Sbjct: 337 LWVFITQLQIQTGTPYIVYKDHCNLKSNQQNLGTI 371


>gi|311977696|ref|YP_003986816.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
 gi|81990393|sp|Q7T6Y8.2|RIR1_MIMIV RecName: Full=Ribonucleoside-diphosphate reductase large subunit;
           AltName: Full=Ribonucleotide reductase large subunit
 gi|55664860|gb|AAQ09572.2| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|308204750|gb|ADO18551.1| ribonucleoside-diphosphate reductase large subunit [Acanthamoeba
           polyphaga mimivirus]
 gi|339061249|gb|AEJ34553.1| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           mimivirus]
 gi|351737467|gb|AEQ60502.1| ribonucleotide reductase large subunit [Acanthamoeba castellanii
           mamavirus]
 gi|398257153|gb|EJN40761.1| ribonucleotide reductase large subunit [Acanthamoeba polyphaga
           lentillevirus]
          Length = 881

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/506 (51%), Positives = 364/506 (71%), Gaps = 11/506 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG+FAI++EPWHGDIF FL+LKKNTG E  RARDLF GL I D FM RV  D  WSLMC
Sbjct: 359 RPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMC 418

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  L + +G++F   Y KYE+EG +++Q+ A  LWF I++SQIETG PY+++KDA N
Sbjct: 419 PSQCPNLLNKYGDEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAIN 478

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
            KSNQ N+G +  SNLC EIVE + K+  +VCNL+SI L  ++   D+  T+N+ KL  +
Sbjct: 479 DKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSICLPRFVKIIDEVPTFNYQKLFKI 538

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           ++I+T+NLN IID+NFYP+++ R +N+R RPIGIGVQGLAD+F   + PFD   +R LN+
Sbjct: 539 SRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEIARDLNR 598

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKE 385
           +IFETIYYGAL  S ++A   G YQTY+GSP+SQG  Q+D+W    + L   WDW  L++
Sbjct: 599 KIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKSQLSGMWDWELLRQ 658

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I  HGVRNSL+   MPTAST+QI+G NE  EPYT NIYSR  ++GE+ V+N HL++DL+
Sbjct: 659 EILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVINKHLIKDLI 718

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           ELG+W+  M D +    GS+ +I  IP  +K +Y+TVWEIPQK++++MAADR  F+DQ+Q
Sbjct: 719 ELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAADRAPFVDQTQ 778

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           S+N+Y+ + ++A+++S  F+ W+ GLKTGMYYLR+KPA++A QF ID  K+    +    
Sbjct: 779 SMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGIDIDKIKEIESKNGI 838

Query: 566 RSQE------EIQADQEQAMAAMICR 585
           + QE      ++     Q ++ M+CR
Sbjct: 839 KKQEDTFDLTDLTNTINQQVSGMVCR 864



 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/230 (46%), Positives = 159/230 (69%), Gaps = 9/230 (3%)

Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W    + L   WDW  L+++I  HGVRNSL+   MPTAST+QI+G NE  EPYT 
Sbjct: 635 FQFDLWNFDKSQLSGMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTE 694

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  ++GE+ V+N HL++DL+ELG+W+  M D +    GS+ +I  IP  +K +Y+T
Sbjct: 695 NIYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRT 754

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAADR  F+DQ+QS+N+Y+ + ++A+++S  F+ W+ GLKTGMYYLR+K
Sbjct: 755 VWEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSK 814

Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQE------EIQADQEQAMAAMICR 989
           PA++A QF ID  K+    +    + QE      ++     Q ++ M+CR
Sbjct: 815 PASSANQFGIDIDKIKEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCR 864



 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 65/87 (74%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG+FAI++EPWHGDIF FL+LKKNTG E  RARDLF GL I D FM RV  D  WSLMC
Sbjct: 359 RPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMC 418

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+ C  L + +G++F   Y KYE+EG+
Sbjct: 419 PSQCPNLLNKYGDEFTKEYLKYESEGI 445



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F   + PFD   +R LN++IFETIYYGAL  S ++A   G YQTY+GSP+S
Sbjct: 572 IGVQGLADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPIS 631

Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
           QG  Q+D+W    + L   WDW  L+   L +G++
Sbjct: 632 QGKFQFDLWNFDKSQLSGMWDWELLRQEILNHGVR 666



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           L  +  + LWF I++SQIETG PY+++KDA N KSNQ N+ V+
Sbjct: 447 LKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINIGVV 489



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 716 LEVIEELYNMVNK-ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           LE  E+LYN  NK E+    P+IS+  Y  I K+   +N  I YDRD+N   FGF+
Sbjct: 163 LETAEKLYN--NKSESNKNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFR 216


>gi|448932906|gb|AGE56464.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus NE-JV-1]
          Length = 764

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/469 (55%), Positives = 353/469 (75%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G E  RAR+LFY +W+ D FMRRVE+DAQWSL+ 
Sbjct: 299 RKGSFAVYLEPHHPDIMDFLLLRRNQGDESLRARNLFYAVWLNDLFMRRVEADAQWSLLD 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL++++G++++DLY +YE+EGK ++ V AR +W +++ +QIETG PY+  KD+ N
Sbjct: 359 PHECPGLTEAFGKEYEDLYVRYESEGKAVKVVKARDVWNSMVTTQIETGMPYVANKDSVN 418

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EI+EYTS +E+AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 419 AKNMQANAGTIKGSNLCCEILEYTSSEEIAVCVIGSIVLKNYVK--NGKFDFDDLRKHVK 476

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  Y VEEAR SNMR RPIG+GVQGL D+F ++++PFD   +R LN+ I
Sbjct: 477 ILAKNLDRSIDVMSYAVEEARVSNMRRRPIGVGVQGLQDVFFKLKMPFDSEAARDLNRDI 536

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WGVTP    DW+ L+E++ K 
Sbjct: 537 FEHIYFAAVEASCELADELGPHPTFEGSPASKGVMQYHLWGVTPQTALDWSGLEERV-KK 595

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 596 GVRNSLTTALMPTASTAQICGSVEAMEPITSNIYSRRTLAGEFPVVNSYLVRELINRGTW 655

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            ++MKDQ+I N GSIQ + GI   +K +YKT WE+  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 656 SESMKDQIIANGGSIQRVIGIHPDVKAVYKTSWELSMKSVIDMAADRGAFVDQTQSMNLF 715

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      ++SM F+GWK GLKT +YYLR+KPAANAIQ T+D+    +A
Sbjct: 716 LASPTLKSVTSMLFYGWKKGLKTMLYYLRSKPAANAIQVTVDECIACSA 764



 Score =  238 bits (606), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/195 (56%), Positives = 147/195 (75%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DW+ L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 571 MQYHLWGVTPQTALDWSGLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNIY 629

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W ++MKDQ+I N GSIQ + GI   +K +YKT WE
Sbjct: 630 SRRTLAGEFPVVNSYLVRELINRGTWSESMKDQIIANGGSIQRVIGIHPDVKAVYKTSWE 689

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A      ++SM F+GWK GLKT +YYLR+KPAA
Sbjct: 690 LSMKSVIDMAADRGAFVDQTQSMNLFLASPTLKSVTSMLFYGWKKGLKTMLYYLRSKPAA 749

Query: 949 NAIQFTIDKTKMANA 963
           NAIQ T+D+    +A
Sbjct: 750 NAIQVTVDECIACSA 764



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G E  RAR+LFY +W+ D FMRRVE+DAQWSL+ 
Sbjct: 299 RKGSFAVYLEPHHPDIMDFLLLRRNQGDESLRARNLFYAVWLNDLFMRRVEADAQWSLLD 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL++++G++++DLY +YE+EG
Sbjct: 359 PHECPGLTEAFGKEYEDLYVRYESEG 384



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%), Gaps = 3/124 (2%)

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDC 611
           D  K    +A    RS + +    E+A  + + RR      +GVQGL D+F ++++PFD 
Sbjct: 470 DLRKHVKILAKNLDRSIDVMSYAVEEARVSNMRRRPIG---VGVQGLQDVFFKLKMPFDS 526

Query: 612 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 671
             +R LN+ IFE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WGVTP    DW
Sbjct: 527 EAARDLNRDIFEHIYFAAVEASCELADELGPHPTFEGSPASKGVMQYHLWGVTPQTALDW 586

Query: 672 AALK 675
           + L+
Sbjct: 587 SGLE 590


>gi|155370864|ref|YP_001426398.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
 gi|155124184|gb|ABT16051.1| hypothetical protein FR483_N766L [Paramecium bursaria Chlorella
           virus FR483]
          Length = 765

 Score =  559 bits (1441), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/469 (55%), Positives = 348/469 (74%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448928435|gb|AGE52006.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CVM-1]
          Length = 765

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/469 (55%), Positives = 348/469 (74%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  230 bits (586), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448927093|gb|AGE50668.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CVA-1]
 gi|448928776|gb|AGE52346.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CVR-1]
          Length = 765

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/469 (55%), Positives = 348/469 (74%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLETRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLETRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 65/84 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKV 676
           +GI+QY +WGVTP    DWA L+ 
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLET 592


>gi|9634360|ref|NP_037899.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
 gi|6960598|gb|AAF33668.1| ORF139 ribonucleotide reductase large subunit (rr1) [Spodoptera
           exigua MNPV]
          Length = 770

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 259/474 (54%), Positives = 354/474 (74%), Gaps = 5/474 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A Y+EPWH +I++FL L++N G E+ +ARDL  GLWIPD FM+RV+++  WSL  
Sbjct: 277 RKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKRVKNNQMWSLFS 336

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
             TC  L+D +G  F+  Y  YE    + RQV AR L+  I+++ +ETG PYMLYKD CN
Sbjct: 337 HKTCPDLADKYGFDFEMRYCDYENAQVYERQVKARDLFRFIVETNVETGGPYMLYKDHCN 396

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
             SNQ+NLGTIKCSNLC EIV+Y  ++E AVCNLASIA+N  ++   KT+++  LK + K
Sbjct: 397 NFSNQKNLGTIKCSNLCAEIVQYCDENETAVCNLASIAVNKCVDVDAKTFDYVLLKHLTK 456

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ +NLNKIIDVN YP  E+  SN +HRPIG+G+QGLAD F+ + + +D +++R +N  I
Sbjct: 457 IIVRNLNKIIDVNHYPTAESERSNKKHRPIGVGIQGLADAFVLLDIAYDSDDARFVNYSI 516

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY----DMWGV-TPTDLWDWAALKE 385
            ETIY+ ALEASCE+A  +GPY++Y  SPVS+GIL +    D  GV    +LWDW  L+ 
Sbjct: 517 AETIYFAALEASCELAKINGPYESYTDSPVSRGILHFHNYDDENGVYHSNNLWDWNELQC 576

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            I K+GVRNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+GEFQVVN +L++ L+
Sbjct: 577 NINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQVVNQYLVKALI 636

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +L ++   ++++++  NGS+Q+I+ IPQ +K+L+KT WEI  K +++MAADR  FIDQSQ
Sbjct: 637 DLDIYTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWEIKSKCIINMAADRAPFIDQSQ 696

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           SLN+++AE  Y+ +SS+HF+ W+  LKTGMYYLRTKPAA A +FT+D   +A+ 
Sbjct: 697 SLNLFVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAAQATKFTVDVETVASC 750



 Score =  239 bits (611), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 149/184 (80%)

Query: 780 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 839
           +LWDW  L+  I K+GVRNSLL+A MPTA+TAQILGNNESFEP+TSN+Y RRVL+GEFQV
Sbjct: 567 NLWDWNELQCNINKYGVRNSLLVAYMPTATTAQILGNNESFEPFTSNVYLRRVLAGEFQV 626

Query: 840 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 899
           VN +L++ L++L ++   ++++++  NGS+Q+I+ IPQ +K+L+KT WEI  K +++MAA
Sbjct: 627 VNQYLVKALIDLDIYTPELRNKILAENGSVQNIDEIPQHVKNLFKTAWEIKSKCIINMAA 686

Query: 900 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
           DR  FIDQSQSLN+++AE  Y+ +SS+HF+ W+  LKTGMYYLRTKPAA A +FT+D   
Sbjct: 687 DRAPFIDQSQSLNLFVAEPTYSVVSSIHFYAWEKKLKTGMYYLRTKPAAQATKFTVDVET 746

Query: 960 MANA 963
           +A+ 
Sbjct: 747 VASC 750



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A Y+EPWH +I++FL L++N G E+ +ARDL  GLWIPD FM+RV+++  WSL  
Sbjct: 277 RKGALAAYIEPWHPEIYEFLNLRRNMGSEDTKARDLMLGLWIPDLFMKRVKNNQMWSLFS 336

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
              C  L+D +G  F+  Y  YE
Sbjct: 337 HKTCPDLADKYGFDFEMRYCDYE 359



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 5/97 (5%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD F+ + + +D +++R +N  I ETIY+ ALEASCE+A  +GPY++Y  SPVS
Sbjct: 488 VGIQGLADAFVLLDIAYDSDDARFVNYSIAETIYFAALEASCELAKINGPYESYTDSPVS 547

Query: 653 QGILQY----DMWGV-TPTDLWDWAALKVLALVYGLK 684
           +GIL +    D  GV    +LWDW  L+     YG++
Sbjct: 548 RGILHFHNYDDENGVYHSNNLWDWNELQCNINKYGVR 584



 Score = 46.6 bits (109), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L+  I+++ +ETG PYMLYKD CN  SNQ+NL  I+
Sbjct: 373 LFRFIVETNVETGGPYMLYKDHCNNFSNQKNLGTIK 408


>gi|448927759|gb|AGE51332.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CVG-1]
          Length = 765

 Score =  557 bits (1435), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/469 (55%), Positives = 348/469 (74%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F ++++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFKLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLETRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  229 bits (585), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLETRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 65/84 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKV 676
           +GI+QY +WGVTP    DWA L+ 
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLET 592


>gi|448925405|gb|AGE48985.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus AP110A]
          Length = 765

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/469 (55%), Positives = 347/469 (73%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +W VTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWSVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 142/195 (72%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWSVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 64/83 (77%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +W VTP    DWA L+
Sbjct: 569 KGIMQYHLWSVTPQTALDWAGLE 591


>gi|155122463|gb|ABT14331.1| hypothetical protein MT325_M777L [Paramecium bursaria chlorella
           virus MT325]
          Length = 765

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/463 (55%), Positives = 345/463 (74%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +Q+ETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQMETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDE 759



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 140/189 (74%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDK 957
           NAI  T+D+
Sbjct: 751 NAIAVTVDE 759



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  116 bits (291), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448926428|gb|AGE50005.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus Can18-4]
          Length = 765

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/463 (55%), Positives = 344/463 (74%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE EGK  R V AR +W  ++ +Q+ETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYETEGKAKRVVKARDVWNTMVTTQMETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDE 759



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 140/189 (74%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDK 957
           NAI  T+D+
Sbjct: 751 NAIAVTVDE 759



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYETEG 385



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448927432|gb|AGE51006.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CVB-1]
          Length = 765

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/469 (55%), Positives = 347/469 (73%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRVQK- 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+    W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARETW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS+N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY+R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAANAIAVTVDECIACSA 765



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 142/195 (72%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRVQK-GVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+    W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARETWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS+N+++A      M+SM F+ WK GLKT +YY+R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSMNLFLATPTLKSMTSMLFYAWKKGLKTLVYYVRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448934617|gb|AGE58170.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus NW665.2]
          Length = 765

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/469 (55%), Positives = 346/469 (73%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F ++++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFKLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS N++
Sbjct: 657 SETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSQNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDECIACSA 765



 Score =  228 bits (581), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/195 (55%), Positives = 141/195 (72%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSETMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSQNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448935705|gb|AGE59255.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus OR0704.2.2]
          Length = 765

 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/469 (55%), Positives = 346/469 (73%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F Q+++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFQLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+G++QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGVMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GS+Q + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS N++
Sbjct: 657 SEAMKNQIIANGGSVQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSQNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDECIACSA 765



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GS+Q + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSVQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSQNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F Q+++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFQLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WGVTP    DWA L+
Sbjct: 569 KGVMQYHLWGVTPQTALDWAGLE 591


>gi|448929444|gb|AGE53012.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CZ-2]
          Length = 765

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/463 (55%), Positives = 343/463 (74%), Gaps = 3/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYETEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F ++++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFKLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS N++
Sbjct: 657 SEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSQNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDE 759



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/189 (57%), Positives = 139/189 (73%), Gaps = 1/189 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GSIQ + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSIQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSQNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDK 957
           NAI  T+D+
Sbjct: 751 NAIAVTVDE 759



 Score =  124 bits (311), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYETEG 385



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448929790|gb|AGE53357.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus Fr5L]
          Length = 765

 Score =  554 bits (1427), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 258/469 (55%), Positives = 346/469 (73%), Gaps = 3/469 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +G+++++LY KYE+EGK  R V AR +W  ++ +QIETG PY+L KD+ N
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEGKAKRVVKARDVWNTMVTTQIETGMPYVLNKDSVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTSK+E AVC + SI L  Y+   +  ++F  L+   K
Sbjct: 420 AKNMQSNAGTIKGSNLCAEIVEYTSKEETAVCVIGSIVLKNYVK--NDAFDFEDLRKHVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++TKNL++ IDV  Y V EA  SN R RP+G+GVQGL D+F ++++PFD  ++R LN++I
Sbjct: 478 VLTKNLDRSIDVMAYAVPEAETSNKRRRPVGVGVQGLQDVFFKLKMPFDSEQARKLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE++   GP+ T+EGSP S+GI+QY +WGVTP    DWA L+ ++ K 
Sbjct: 538 FEHIYFAAVEASCELSDEHGPHPTFEGSPASKGIMQYHLWGVTPQTALDWAGLESRV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSNIYSRR L+GEF VVN +L+R+L+  G W
Sbjct: 597 GVRNSLTTALMPTASTAQICGSVEAAEPITSNIYSRRTLAGEFPVVNSYLVRELIARGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GS+Q + GI   +K +YKT WEI  KTV+D+AADRGAF+DQ+QS N++
Sbjct: 657 SEAMKNQIIANGGSVQKVIGIHPDVKAVYKTSWEISMKTVIDLAADRGAFVDQTQSQNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +A      M+SM F+ WK GLKT +YY R+KPAANAI  T+D+    +A
Sbjct: 717 LATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAANAIAVTVDECIACSA 765



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/195 (55%), Positives = 141/195 (72%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WGVTP    DWA L+ ++ K GVRNSL  A MPTASTAQI G+ E+ EP TSNIY
Sbjct: 572 MQYHLWGVTPQTALDWAGLESRV-KKGVRNSLTTALMPTASTAQICGSVEAAEPITSNIY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+  G W + MK+Q+I N GS+Q + GI   +K +YKT WE
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIARGTWSEAMKNQIIANGGSVQKVIGIHPDVKAVYKTSWE 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           I  KTV+D+AADRGAF+DQ+QS N+++A      M+SM F+ WK GLKT +YY R+KPAA
Sbjct: 691 ISMKTVIDLAADRGAFVDQTQSQNLFLATPTLKSMTSMLFYAWKKGLKTLVYYTRSKPAA 750

Query: 949 NAIQFTIDKTKMANA 963
           NAI  T+D+    +A
Sbjct: 751 NAIAVTVDECIACSA 765



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL+ 
Sbjct: 300 RKGSFAVYLEPHHPDIMDFLLLRRNQGEESLRARNLFYAMWVNDLFMKRVETDAQWSLLD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +G+++++LY KYE+EG
Sbjct: 360 PHECPGLSDVYGKEYEELYTKYESEG 385



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 65/83 (78%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++++PFD  ++R LN++IFE IY+ A+EASCE++   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKMPFDSEQARKLNREIFEHIYFAAVEASCELSDEHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GI+QY +WGVTP    DWA L+
Sbjct: 569 KGIMQYHLWGVTPQTALDWAGLE 591


>gi|448932314|gb|AGE55873.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus MO0605SPH]
 gi|448936443|gb|AGE59990.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus WI0606]
          Length = 763

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/467 (55%), Positives = 345/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+TKNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILTKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   MSSM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   MSSM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|373448932|gb|AEY74311.1| ribonucleotide reductase large subunit [Vaccinia virus]
          Length = 416

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 255/373 (68%), Positives = 317/373 (84%), Gaps = 3/373 (0%)

Query: 184 ARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCN 243
           AR +W AI++SQIETGTP++LYKDACN+KSNQQNLGTIKCSNLCTEI++Y   +EVAVCN
Sbjct: 31  ARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCN 90

Query: 244 LASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303
           LAS+ALNM++   D  ++F KLKDV K++ +NLNKIID+N+YP+ EA  SN RHRPIGIG
Sbjct: 91  LASVALNMFV--IDGRFDFLKLKDVVKVIVRNLNKIIDINYYPIPEAEISNKRHRPIGIG 148

Query: 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG 363
           VQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++GPY TY GS  S G
Sbjct: 149 VQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKEGPYDTYVGSYASNG 208

Query: 364 ILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 423
           ILQYD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNI
Sbjct: 209 ILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNI 268

Query: 424 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 483
           Y+RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+W
Sbjct: 269 YTRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIW 327

Query: 484 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543
           EIPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA
Sbjct: 328 EIPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPA 387

Query: 544 ANAIQFTIDKTKM 556
           +  IQFT+DK K+
Sbjct: 388 SAPIQFTLDKDKI 400



 Score =  286 bits (732), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 210 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 269

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RRVLSGEFQVVN HLLR L E  LW+D +K++++ + GSIQ+   +P+ +K +YKT+WE
Sbjct: 270 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 328

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 329 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 388

Query: 949 NAIQFTIDKTKM 960
             IQFT+DK K+
Sbjct: 389 APIQFTLDKDKI 400



 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 75/104 (72%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 135 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 194

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY TY GS  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 195 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 238



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 34  VWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 69


>gi|448933916|gb|AGE57471.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus NE-JV-4]
          Length = 766

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/467 (55%), Positives = 349/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN R RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+ +   ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 147/193 (76%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+ +   ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPKSNLDWRGLE 591


>gi|448931980|gb|AGE55540.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus MN0810.1]
          Length = 763

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 258/467 (55%), Positives = 343/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAQWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G+++++LY KYE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEELYTKYETEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 AKNMQSNAGTIKGSNLCAEIVEYTSTDEAAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EAR SN+R RPIG+GVQGL D+F ++RLPFD + +R LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEARTSNLRRRPIGVGVQGLQDVFFKLRLPFDSDAARNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +W   P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELADEHGPHPTFEGSPASRGVMQYHLWNSEPVTSLDWKGLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN +L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNSYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAVYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   M+SM F+ WK GLKT  YYLR+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKTMTSMLFYAWKKGLKTLQYYLRSKPAANAIAVTVGEECIA 760



 Score =  220 bits (561), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 139/193 (72%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W   P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWNSEPVTSLDWKGLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNSYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAVYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   M+SM F+ WK GLKT  YYLR+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKTMTSMLFYAWKKGLKTLQYYLRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECIA 760



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 68/86 (79%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAQWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G+++++LY KYE EG
Sbjct: 357 PKECPGLTDAFGKEYEELYTKYETEG 382



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 61/83 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++RLPFD + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRLPFDSDAARNLNREIFENIYFAAVEASCELADEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +W   P    DW  L+
Sbjct: 566 RGVMQYHLWNSEPVTSLDWKGLE 588


>gi|448933310|gb|AGE56866.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus NE-JV-3]
          Length = 763

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 344/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   MSSM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   MSSM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|9632159|ref|NP_048985.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
 gi|2447101|gb|AAC96959.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
          Length = 771

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/467 (55%), Positives = 347/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 305 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 364

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KD  N
Sbjct: 365 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDTVN 424

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 425 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 482

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN R RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 483 ILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 542

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY MW VTP    DW  L+E++ K 
Sbjct: 543 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHMWDVTPKSNLDWRGLEERV-KK 601

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 602 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 661

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 662 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 721

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+     ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 722 LAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 768



 Score =  232 bits (592), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 146/193 (75%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y MW VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 577 LQYHMWDVTPKSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 636 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+     ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 696 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 755

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 756 SAIAVTVDTECVA 768



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 305 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 364

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 365 PSECPGLTDAFGDEYAELYTRYEAEG 390



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 514 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 573

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY MW VTP    DW  L+
Sbjct: 574 KGILQYHMWDVTPKSNLDWRGLE 596


>gi|448932971|gb|AGE56528.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus NE-JV-2]
          Length = 763

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 255/467 (54%), Positives = 344/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GS+Q + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSVQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   MSSM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GS+Q + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSVQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   MSSM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|448935771|gb|AGE59320.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus OR0704.3]
          Length = 763

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/467 (54%), Positives = 344/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   M+SM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  225 bits (574), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|448936105|gb|AGE59653.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus TN603.4.2]
          Length = 763

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 342/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  YI   +  Y+F  L+   K
Sbjct: 417 AKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYIK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNL++ IDV  Y + EA  SNMR RPIG+GVQGL D+F ++R+PFD + +R LN++I
Sbjct: 475 VLAKNLDRSIDVMSYAIPEAMTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAARNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FEHIYFAAMEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A      M+SM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPTMKSMTSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECIA 760



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 140/193 (72%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A      M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPTMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECIA 760



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEG 382



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 3/124 (2%)

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDC 611
           D  K    +A    RS + +     +AM + + RR      +GVQGL D+F ++R+PFD 
Sbjct: 468 DLRKHVKVLAKNLDRSIDVMSYAIPEAMTSNMRRR---PIGVGVQGLQDVFFKLRMPFDS 524

Query: 612 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 671
           + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW
Sbjct: 525 DAARNLNREIFEHIYFAAMEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDW 584

Query: 672 AALK 675
             L+
Sbjct: 585 KTLE 588


>gi|448931908|gb|AGE55469.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus MA-1E]
          Length = 766

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 347/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN R RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKRRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMA DRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMATDRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+     ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  229 bits (584), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 145/193 (75%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMA DRGAF+DQ+QS+N+++A+     ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMATDRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPKSNLDWRGLE 591


>gi|448925806|gb|AGE49384.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus Can0610SP]
          Length = 763

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/467 (54%), Positives = 344/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GS+Q + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSVQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   M+SM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GS+Q + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSVQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|155371048|ref|YP_001426582.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
 gi|155124368|gb|ABT16235.1| hypothetical protein ATCV1_Z101L [Acanthocystis turfacea Chlorella
           virus 1]
          Length = 763

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/467 (54%), Positives = 343/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE+EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTI  SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTITGSNLCAEIVEYTSTDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL+K IDV  Y + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + ++ LN++I
Sbjct: 475 ILAKNLDKSIDVMSYAIPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAAKNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FENIYFAAVEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   MSSM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  226 bits (577), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   MSSM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMSSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE+EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYESEG 382



 Score =  109 bits (272), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + ++ LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAAKNLNREIFENIYFAAVEASCELAEEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTRLDWKTLE 588


>gi|448929110|gb|AGE52679.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CvsA1]
          Length = 766

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 347/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKMRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+     ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 146/193 (75%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+     ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPKSNLDWRGLE 591


>gi|448931166|gb|AGE54729.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus KS1B]
          Length = 766

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 348/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHATFEGSPASKGILQYHLWDVTPQSNLDWRGLEERV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+ +   ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 147/193 (76%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPQSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+ +   ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHATFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPQSNLDWRGLE 591


>gi|448925052|gb|AGE48633.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus AN69C]
 gi|448930475|gb|AGE54040.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus IL-3A]
          Length = 766

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 348/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHLWDVTPQSNLDWRGLEERV-KK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+ +   ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  231 bits (589), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 147/193 (76%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPQSNLDWRGLEERV-KKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+ +   ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPQSNLDWRGLE 591


>gi|448925474|gb|AGE49053.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus Br0604L]
          Length = 763

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 256/467 (54%), Positives = 340/467 (72%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GLSD++G++++DLY +YE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLSDAFGKEYEDLYLRYETEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  YI   +  Y+F  L+   K
Sbjct: 417 AKNMQSNAGTIKGSNLCAEIVEYTSTDETAVCVIGSIVLQNYIK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNL++ IDV  Y + EA  SNM  RPIG+GVQGL D+F ++R+PFD + +R LN++I
Sbjct: 475 VLAKNLDRSIDVMSYAIPEAMTSNMHRRPIGVGVQGLQDVFFKLRMPFDSDAARNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L E++ K 
Sbjct: 535 FEHIYFAAMEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKTLGERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A      M+SM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPTMKSMTSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 139/193 (72%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTRLDWKTLGERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A      M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPTMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GLSD++G++++DLY +YE EG
Sbjct: 357 PKECPGLSDAFGKEYEDLYLRYETEG 382



 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 76/123 (61%), Gaps = 3/123 (2%)

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDC 611
           D  K    +A    RS + +     +AM + + RR      +GVQGL D+F ++R+PFD 
Sbjct: 468 DLRKHVKVLAKNLDRSIDVMSYAIPEAMTSNMHRR---PIGVGVQGLQDVFFKLRMPFDS 524

Query: 612 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 671
           + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW
Sbjct: 525 DAARNLNREIFEHIYFAAMEASCELAEEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDW 584

Query: 672 AAL 674
             L
Sbjct: 585 KTL 587


>gi|448933990|gb|AGE57544.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus NTS-1]
          Length = 763

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 254/467 (54%), Positives = 343/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYT+ DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 VKNMQSNAGTIKGSNLCAEIVEYTATDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++ KNL+K IDV  Y + EAR SNMR RPIG+GVQGL D+F ++R+PFD + +R LN++I
Sbjct: 475 VLAKNLDKSIDVMSYAIPEARTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAARNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FEHIYFAAVEASCELADEHGPHPTFEGSPASRGVMQYHLWGSEPVTRLDWKTLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF +VN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPMVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   M+SM F+ WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 714 VAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAANAIAVTVGEECLA 760



 Score =  223 bits (568), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/193 (54%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGSEPVTRLDWKTLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF +VN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPMVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  T+ +  +A
Sbjct: 748 NAIAVTVGEECLA 760



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 66/86 (76%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+D  WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVEADVAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEG 382



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRMPFDSDAARNLNREIFEHIYFAAVEASCELADEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGSEPVTRLDWKTLE 588


>gi|448926493|gb|AGE50069.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
           Chlorella virus Canal-1]
          Length = 763

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 255/467 (54%), Positives = 343/467 (73%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G+++++LY +YE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEELYARYETEGRAKKIVKARDVWNAMIVTQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+ Q N GTIK SNLC EIVEYTS DE AVC + SI L  Y+   +  Y+F  L+   K
Sbjct: 417 AKNMQSNAGTIKGSNLCAEIVEYTSTDEAAVCVIGSIVLQNYVK--NGVYDFEDLRKHVK 474

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
            + KNL++ IDV  Y + EAR SN+R RPIG+GVQGL D+F ++RLPFD + +R LN++I
Sbjct: 475 TLAKNLDRSIDVMSYAIPEARTSNLRRRPIGVGVQGLQDVFFKLRLPFDSDAARNLNREI 534

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IY+ A+EASCE+A   GP+ T+EGSP S+G++QY +WG  P    DW  L+E++ K 
Sbjct: 535 FEHIYFAAVEASCELADEHGPHPTFEGSPASRGVMQYHLWGTEPVTHLDWKGLEERV-KK 593

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL  A MPTASTAQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W
Sbjct: 594 GVRNSLTTALMPTASTAQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTW 653

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            + MK+Q+I N GSIQ + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N++
Sbjct: 654 SEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLF 713

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A  +   ++SM F+ WK GLKT  YYLR+KPAANAI  TI +  +A
Sbjct: 714 VAAPSMKSLTSMLFYAWKKGLKTLQYYLRSKPAANAIAVTIGEECIA 760



 Score =  223 bits (569), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/193 (54%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +WG  P    DW  L+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 569 MQYHLWGTEPVTHLDWKGLEERV-KKGVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 628 SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KTV+D+AADRG F+DQ+QS+N+++A  +   ++SM F+ WK GLKT  YYLR+KPAA
Sbjct: 688 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPSMKSLTSMLFYAWKKGLKTLQYYLRSKPAA 747

Query: 949 NAIQFTIDKTKMA 961
           NAI  TI +  +A
Sbjct: 748 NAIAVTIGEECIA 760



 Score =  116 bits (290), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G+++++LY +YE EG
Sbjct: 357 PKECPGLTDAFGKEYEELYARYETEG 382



 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++RLPFD + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 506 VGVQGLQDVFFKLRLPFDSDAARNLNREIFEHIYFAAVEASCELADEHGPHPTFEGSPAS 565

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW  L+
Sbjct: 566 RGVMQYHLWGTEPVTHLDWKGLE 588


>gi|448928094|gb|AGE51666.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus CviKI]
          Length = 766

 Score =  544 bits (1401), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/467 (55%), Positives = 346/467 (74%), Gaps = 3/467 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY +YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVANKDAVN 419

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EI+EYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 420 KKNMQSNAGTIRGSNLCIEILEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 477

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD  E+R LN++I
Sbjct: 478 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSPEARDLNREI 537

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GP+ T+EGSP S+GILQY +W VTP    DW  L EK  K 
Sbjct: 538 FEHIYYAAVEASVELAEIHGPHPTFEGSPASKGILQYHLWDVTPKSNLDWRGL-EKRVKK 596

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLL A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 597 GVRNSLLTALMPTASTAQICGSVEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 656

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            +NMK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRGAF+DQ+QS+N++
Sbjct: 657 SENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGAFVDQTQSMNLF 716

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
           +A+ +   ++SM F+GWK GLK+  YYLR+KPA++AI  T+D   +A
Sbjct: 717 LAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPASSAIAVTVDTECVA 763



 Score =  229 bits (585), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 108/193 (55%), Positives = 145/193 (75%), Gaps = 1/193 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L EK  K GVRNSLL A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 572 LQYHLWDVTPKSNLDWRGL-EKRVKKGVRNSLLTALMPTASTAQICGSVEAFEPITSNLY 630

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W +NMK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 631 SRRTLAGEFPVVNSYLVRELIERGTWSENMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 690

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRGAF+DQ+QS+N+++A+ +   ++SM F+GWK GLK+  YYLR+KPA+
Sbjct: 691 LSMKSVIDMAADRGAFVDQTQSMNLFLAQPSLKNVTSMLFYGWKSGLKSLQYYLRSKPAS 750

Query: 949 NAIQFTIDKTKMA 961
           +AI  T+D   +A
Sbjct: 751 SAIAVTVDTECVA 763



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H DI DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 300 RKGSFAIYLEPHHPDIMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY +YEAEG
Sbjct: 360 PSECPGLTDAFGDEYAELYTRYEAEG 385



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD  E+R LN++IFE IYY A+EAS E+A   GP+ T+EGSP S
Sbjct: 509 VGVQGLQDVFFKLKLPFDSPEARDLNREIFEHIYYAAVEASVELAEIHGPHPTFEGSPAS 568

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 569 KGILQYHLWDVTPKSNLDWRGLE 591


>gi|157953938|ref|YP_001498829.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
 gi|156068586|gb|ABU44293.1| hypothetical protein AR158_C748R [Paramecium bursaria Chlorella
           virus AR158]
 gi|448931537|gb|AGE55099.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus MA-1D]
 gi|448934986|gb|AGE58538.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus NY-2B]
          Length = 767

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/462 (54%), Positives = 346/462 (74%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY++YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVN 420

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EIVEYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 421 KKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD +E+R LN++I
Sbjct: 479 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSSEARDLNREI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GPY T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 539 FEHIYYAAVEASIELAEIHGPYPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL+ A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 598 GVRNSLVTALMPTASTAQICGSIEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            ++MK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRG F+DQ+QS+N++
Sbjct: 658 SESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGPFVDQTQSMNLF 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +A+     ++SM F+GWK GLKT  YYLR+KP+++AI  TID
Sbjct: 718 LAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPSSSAIAVTID 759



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSL+ A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 573 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLVTALMPTASTAQICGSIEAFEPITSNLY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W ++MK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 632 SRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRG F+DQ+QS+N+++A+     ++SM F+GWK GLKT  YYLR+KP++
Sbjct: 692 LSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPSS 751

Query: 949 NAIQFTID 956
           +AI  TID
Sbjct: 752 SAIAVTID 759



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY++YEAEG
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEG 386



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD +E+R LN++IFE IYY A+EAS E+A   GPY T+EGSP S
Sbjct: 510 VGVQGLQDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHGPYPTFEGSPAS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 570 KGILQYHLWDVTPKSNLDWRGLE 592


>gi|448930855|gb|AGE54419.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus IL-5-2s1]
          Length = 767

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 254/462 (54%), Positives = 346/462 (74%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY++YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVN 420

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EIVEYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 421 KKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD +E+R LN++I
Sbjct: 479 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSSEARDLNREI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A   GPY T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 539 FEHIYYAAVEASIELAEIHGPYPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL+ A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 598 GVRNSLVTALMPTASTAQICGSIEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            ++MK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMA DRGAF+DQ+QS+N++
Sbjct: 658 SESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMATDRGAFVDQTQSMNLF 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +A  +   ++SM F+GWK GLKT  YYLR+KP+++AI  TID
Sbjct: 718 LAAPSLKNVTSMLFYGWKSGLKTLQYYLRSKPSSSAIAVTID 759



 Score =  226 bits (575), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSL+ A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 573 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLVTALMPTASTAQICGSIEAFEPITSNLY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W ++MK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 632 SRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMA DRGAF+DQ+QS+N+++A  +   ++SM F+GWK GLKT  YYLR+KP++
Sbjct: 692 LSMKSVIDMATDRGAFVDQTQSMNLFLAAPSLKNVTSMLFYGWKSGLKTLQYYLRSKPSS 751

Query: 949 NAIQFTID 956
           +AI  TID
Sbjct: 752 SAIAVTID 759



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY++YEAEG
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEG 386



 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD +E+R LN++IFE IYY A+EAS E+A   GPY T+EGSP S
Sbjct: 510 VGVQGLQDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHGPYPTFEGSPAS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 570 KGILQYHLWDVTPKSNLDWRGLE 592


>gi|269859792|ref|XP_002649620.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066983|gb|EED44452.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 769

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/490 (54%), Positives = 351/490 (71%), Gaps = 13/490 (2%)

Query: 84  AEGLVYF------RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFM 137
           +E + YF      R  + A YLEPWH DIFDFL L+KNTG E+ RARD F GL+I D FM
Sbjct: 266 SETIKYFNKNETKRSTSCAFYLEPWHPDIFDFLNLRKNTGPEDMRARDAFIGLFINDIFM 325

Query: 138 RRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIE 197
            RV+++  WSL  P+   GL ++WG++F+ LY+ YE     I  +PA+KLW  I+ +QIE
Sbjct: 326 ERVQNNENWSLFDPSIATGLINAWGDEFNKLYEYYEKTIPKI-TIPAQKLWKEIICAQIE 384

Query: 198 TGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD 257
           TGTPY++YKD+CNR SNQ NLGTIK SNLC EI+EY+  +   VCNLASI L  +IN A+
Sbjct: 385 TGTPYLVYKDSCNRNSNQNNLGTIKSSNLCAEIIEYSDANITGVCNLASICLPKFINNAN 444

Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
           + ++F +L  V K VT NLNK+ID++FYP +EA+ SN   RPIGIGVQGLAD   +MR+P
Sbjct: 445 Q-FDFKQLYQVMKKVTINLNKLIDISFYPTKEAKYSNEATRPIGIGVQGLADALCKMRIP 503

Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP--- 374
           F+ ++++ LN+ IFET+YY  +E S E+A   GPY     S  S+GI  ++ +       
Sbjct: 504 FESSQAKELNRMIFETMYYSVMETSMELAKTYGPYPLITNSMYSKGIFHFEKYLKNKNID 563

Query: 375 --TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
             + LWDW  L+EKI  +GVRNSL ++ MPTA+TAQI GN+E  EP TSNIY+RR   GE
Sbjct: 564 ILSGLWDWEDLREKIRLYGVRNSLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGE 623

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           FQ+VN +L+ DL++LGLW + MK  +I  NGSIQ+I  IP  +K+LYKTVWEI  K +LD
Sbjct: 624 FQIVNKYLMNDLIKLGLWSNEMKQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILD 683

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           MA +R AF+DQSQSLN+++++  YA +SSMHF+GWKLGLKTG+YYLRT P A+AI+FTID
Sbjct: 684 MAHERQAFVDQSQSLNLFISQPTYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTID 743

Query: 553 KTKMANAMAS 562
           K  +   ++S
Sbjct: 744 KELIIRTLSS 753



 Score =  246 bits (629), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/188 (60%), Positives = 147/188 (78%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           + LWDW  L+EKI  +GVRNSL ++ MPTA+TAQI GN+E  EP TSNIY+RR   GEFQ
Sbjct: 566 SGLWDWEDLREKIRLYGVRNSLTLSIMPTATTAQICGNSECVEPITSNIYTRRTFVGEFQ 625

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           +VN +L+ DL++LGLW + MK  +I  NGSIQ+I  IP  +K+LYKTVWEI  K +LDMA
Sbjct: 626 IVNKYLMNDLIKLGLWSNEMKQLIIEYNGSIQNIPTIPSNIKNLYKTVWEIKMKCILDMA 685

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +R AF+DQSQSLN+++++  YA +SSMHF+GWKLGLKTG+YYLRT P A+AI+FTIDK 
Sbjct: 686 HERQAFVDQSQSLNLFISQPTYAILSSMHFYGWKLGLKTGIYYLRTSPIASAIKFTIDKE 745

Query: 959 KMANAMAS 966
            +   ++S
Sbjct: 746 LIIRTLSS 753



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R  + A YLEPWH DIFDFL L+KNTG E+ RARD F GL+I D FM RV+++  WSL  
Sbjct: 279 RSTSCAFYLEPWHPDIFDFLNLRKNTGPEDMRARDAFIGLFINDIFMERVQNNENWSLFD 338

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL ++WG++F+ LY+ YE
Sbjct: 339 PSIATGLINAWGDEFNKLYEYYE 361



 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%), Gaps = 5/97 (5%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD   +MR+PF+ ++++ LN+ IFET+YY  +E S E+A   GPY     S  S
Sbjct: 488 IGVQGLADALCKMRIPFESSQAKELNRMIFETMYYSVMETSMELAKTYGPYPLITNSMYS 547

Query: 653 QGILQYDMWGVTP-----TDLWDWAALKVLALVYGLK 684
           +GI  ++ +         + LWDW  L+    +YG++
Sbjct: 548 KGIFHFEKYLKNKNIDILSGLWDWEDLREKIRLYGVR 584



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLAL-VYGLKLWFAILDSQIETGTPYMLYKDACNR 709
           ++ G++  + WG     L+++    +  + +   KLW  I+ +QIETGTPY++YKD+CNR
Sbjct: 341 IATGLI--NAWGDEFNKLYEYYEKTIPKITIPAQKLWKEIICAQIETGTPYLVYKDSCNR 398

Query: 710 KSNQQNLEVIE 720
            SNQ NL  I+
Sbjct: 399 NSNQNNLGTIK 409


>gi|17158276|ref|NP_477694.1| wsv172 [Shrimp white spot syndrome virus]
 gi|6165659|gb|AAF04636.1|AF099142_4 large subunit of ribonucleotide reductase [shrimp white spot
           syndrome virus]
 gi|15021484|gb|AAK77761.1|AF369029_92 ORF92, putative ribonucleotide reductase large subunit (RR1)
           [shrimp white spot syndrome virus]
 gi|17016570|gb|AAL33176.1| wsv172 [shrimp white spot syndrome virus]
 gi|19481820|gb|AAL89096.1| WSSV228 [shrimp white spot syndrome virus]
 gi|417072401|gb|AFX59550.1| wsv172 [White spot syndrome virus]
          Length = 848

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 261/478 (54%), Positives = 353/478 (73%), Gaps = 16/478 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIY+  WH D+ DF++ +KN G E+ R RDLF  +W+ D FM RV++   WSLMC
Sbjct: 316 RRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLFPAIWVSDLFMERVKAGKNWSLMC 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD  GE+F  LY+KYEAEGK    V AR L+  I  ++IETGTPY+ +KD  N
Sbjct: 376 PHECPGLSDVHGEEFKALYEKYEAEGKGKEVVKARALFDQINSARIETGTPYVCFKDTIN 435

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PADKTY-NFTKL 265
           RKSNQ+N+G IK SNLCTEIV+Y+  +E AVCNLASIA+N ++     P+ + Y ++ ++
Sbjct: 436 RKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVNKFVKYSPIPSLRPYVDYREM 495

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K V KI+T+NL+K+IDVNFY V++ R SNM+ RP+G+GVQGLADLF ++R+PF+  E+ L
Sbjct: 496 KRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQGLADLFFKLRIPFESEEAAL 555

Query: 326 LNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMW--GVTPTDLW---- 378
           +NK+IFETIYYGALEASCEIA   G  Y+ +EGSP+S+GI Q+DM    +   D++    
Sbjct: 556 INKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGIFQFDMGKENIKNRDIYFNSL 615

Query: 379 ---DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
              DW  L+  I K+GV NS+ +APMPTASTAQILGN+ESFEP TSN+Y+R VLSG FQV
Sbjct: 616 PIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQV 675

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN +++R+L++LG W+   K +++ + GSIQ +  IP+  K+L+KTVWEI  +T LDMA 
Sbjct: 676 VNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMAI 735

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            RG F+DQ+QSLN+++ E   +K+ SM  + W+ G+KT +YYLRTK AA A+QFT+DK
Sbjct: 736 QRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKT-LYYLRTKGAARAVQFTVDK 792



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 157/239 (65%), Gaps = 18/239 (7%)

Query: 736 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG--------FKYDMW--GVTPTDLW--- 782
           +I+ + +E I   A   +  I  ++   Y  F         F++DM    +   D++   
Sbjct: 555 LINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGIFQFDMGKENIKNRDIYFNS 614

Query: 783 ----DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
               DW  L+  I K+GV NS+ +APMPTASTAQILGN+ESFEP TSN+Y+R VLSG FQ
Sbjct: 615 LPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQ 674

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           VVN +++R+L++LG W+   K +++ + GSIQ +  IP+  K+L+KTVWEI  +T LDMA
Sbjct: 675 VVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMA 734

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
             RG F+DQ+QSLN+++ E   +K+ SM  + W+ G+KT +YYLRTK AA A+QFT+DK
Sbjct: 735 IQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKT-LYYLRTKGAARAVQFTVDK 792



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 61/86 (70%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIY+  WH D+ DF++ +KN G E+ R RDLF  +W+ D FM RV++   WSLMC
Sbjct: 316 RRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLFPAIWVSDLFMERVKAGKNWSLMC 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD  GE+F  LY+KYEAEG
Sbjct: 376 PHECPGLSDVHGEEFKALYEKYEAEG 401



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 10/101 (9%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPV 651
           +GVQGLADLF ++R+PF+  E+ L+NK+IFETIYYGALEASCEIA   G  Y+ +EGSP+
Sbjct: 532 LGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPL 591

Query: 652 SQGILQYDMW--GVTPTDLW-------DWAALKVLALVYGL 683
           S+GI Q+DM    +   D++       DW  L+   + YG+
Sbjct: 592 SKGIFQFDMGKENIKNRDIYFNSLPIHDWEQLRRDIMKYGV 632



 Score = 45.1 bits (105), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V    L+  I  ++IETGTPY+ +KD  NRKSNQ+N+ +I+
Sbjct: 406 VVKARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIK 447


>gi|448935365|gb|AGE58916.1| ribonucleotide reductase large subunit [Paramecium bursaria
           Chlorella virus NYs1]
          Length = 767

 Score =  540 bits (1392), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 253/462 (54%), Positives = 345/462 (74%), Gaps = 3/462 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY++YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVN 420

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
           +K+ Q N GTI+ SNLC EIVEYTSK+E AVC + S+ L  Y+   +  ++F  L+   K
Sbjct: 421 KKNMQMNAGTIRGSNLCNEIVEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVK 478

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           I+ KNL++ IDV  YP++EA  SN   RPIG+GVQGL D+F +++LPFD +E+R LN++I
Sbjct: 479 ILAKNLDRSIDVMSYPIKEAETSNKLRRPIGVGVQGLQDVFFKLKLPFDSSEARDLNREI 538

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FE IYY A+EAS E+A    PY T+EGSP S+GILQY +W VTP    DW  L+E++ K 
Sbjct: 539 FEHIYYAAVEASIELAEIHDPYPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KK 597

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSL+ A MPTASTAQI G+ E+FEP TSN+YSRR L+GEF VVN +L+R+L+E G W
Sbjct: 598 GVRNSLVTALMPTASTAQICGSIEAFEPITSNLYSRRTLAGEFPVVNSYLVRELIERGTW 657

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
            ++MK+Q+I N GSIQ + GI   +K +YKT W++  K+V+DMAADRG F+DQ+QS+N++
Sbjct: 658 SESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWDLSMKSVIDMAADRGPFVDQTQSMNLF 717

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           +A+     ++SM F+GWK GLKT  YYLR+KP+++AI  TID
Sbjct: 718 LAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPSSSAIAVTID 759



 Score =  226 bits (576), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/188 (55%), Positives = 143/188 (76%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +Y +W VTP    DW  L+E++ K GVRNSL+ A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 573 LQYHLWDVTPKSNLDWRGLEERV-KKGVRNSLVTALMPTASTAQICGSIEAFEPITSNLY 631

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRR L+GEF VVN +L+R+L+E G W ++MK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 632 SRRTLAGEFPVVNSYLVRELIERGTWSESMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 691

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  K+V+DMAADRG F+DQ+QS+N+++A+     ++SM F+GWK GLKT  YYLR+KP++
Sbjct: 692 LSMKSVIDMAADRGPFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPSS 751

Query: 949 NAIQFTID 956
           +AI  TID
Sbjct: 752 SAIAVTID 759



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHPDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY++YEAEG
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEG 386



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F +++LPFD +E+R LN++IFE IYY A+EAS E+A    PY T+EGSP S
Sbjct: 510 VGVQGLQDVFFKLKLPFDSSEARDLNREIFEHIYYAAVEASIELAEIHDPYPTFEGSPAS 569

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 570 KGILQYHLWDVTPKSNLDWRGLE 592


>gi|269860694|ref|XP_002650066.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
 gi|220066497|gb|EED43976.1| ribonucleoside-diphosphate reductase large chain [Enterocytozoon
           bieneusi H348]
          Length = 778

 Score =  540 bits (1391), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/498 (53%), Positives = 345/498 (69%), Gaps = 13/498 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R    A YLEPWH DI  FL+L+KNTG EE RARD F  LWI D FM RVE +  WSL  
Sbjct: 275 RCATCAFYLEPWHKDILKFLDLRKNTGIEEERARDSFTALWINDLFMERVEKNEMWSLFD 334

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN  +GL D WG++F+ LY  YE E      +PA+KLW  I+ SQIETGTPYM YKD CN
Sbjct: 335 PNIAKGLQDVWGDQFNKLYAYYE-ETIERTTIPAQKLWKEIICSQIETGTPYMCYKDTCN 393

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YNFTKLK 266
           R SNQ N+GTIK SNLC EI++Y+  D  AVCNLASI L  Y+     T    ++F +L 
Sbjct: 394 RYSNQNNIGTIKSSNLCAEIIQYSDSDITAVCNLASICLPKYVKINSTTSNYYFDFQELY 453

Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            V KIVT N+NK+ID + +P EE++  N   RPIGIGVQGLAD+F  M   F+  E+R L
Sbjct: 454 TVVKIVTYNMNKMIDKSAFPTEESKKGNSLFRPIGIGVQGLADVFFLMGYSFESKEARDL 513

Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------GVTPTDLWD 379
           NK IFET+Y+GALEASCE+A + GPY  Y+GS  SQGI  ++ +           + +W+
Sbjct: 514 NKMIFETLYFGALEASCELAQKHGPYSYYQGSMYSQGIFHFEKFCEGRINVNEILSGMWN 573

Query: 380 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 439
           W  L+ K+  +GVRNSL +A MPTAST+QI GN+E  EP  SNI++RR  +GEFQ+VN +
Sbjct: 574 WEELRIKMKTYGVRNSLTLALMPTASTSQICGNSECIEPIQSNIFTRRTFAGEFQIVNKY 633

Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
           L++DL++LGLW++ +K  +I   GSIQ I  IPQ +KDLYKTVWE+  K+VLDMA DR A
Sbjct: 634 LMKDLIKLGLWNNEIKQLIIEYEGSIQKIPIIPQHVKDLYKTVWELKMKSVLDMAIDRQA 693

Query: 500 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           F+DQSQSLN+++ E  Y  +SSMHF+GWK  LKTGMYYLRT P A AI+FT+DK  +   
Sbjct: 694 FVDQSQSLNLFVKEPTYGILSSMHFYGWKNKLKTGMYYLRTCPLAKAIKFTVDKELILKT 753

Query: 560 MAS-KDARSQEEIQADQE 576
           ++S KD+ + +++  + +
Sbjct: 754 LSSFKDSENDKKLNKEND 771



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 152/203 (74%), Gaps = 1/203 (0%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           + +W+W  L+ K+  +GVRNSL +A MPTAST+QI GN+E  EP  SNI++RR  +GEFQ
Sbjct: 569 SGMWNWEELRIKMKTYGVRNSLTLALMPTASTSQICGNSECIEPIQSNIFTRRTFAGEFQ 628

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           +VN +L++DL++LGLW++ +K  +I   GSIQ I  IPQ +KDLYKTVWE+  K+VLDMA
Sbjct: 629 IVNKYLMKDLIKLGLWNNEIKQLIIEYEGSIQKIPIIPQHVKDLYKTVWELKMKSVLDMA 688

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            DR AF+DQSQSLN+++ E  Y  +SSMHF+GWK  LKTGMYYLRT P A AI+FT+DK 
Sbjct: 689 IDRQAFVDQSQSLNLFVKEPTYGILSSMHFYGWKNKLKTGMYYLRTCPLAKAIKFTVDKE 748

Query: 959 KMANAMAS-KDTRSQEEIQADQE 980
            +   ++S KD+ + +++  + +
Sbjct: 749 LILKTLSSFKDSENDKKLNKEND 771



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 55/83 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R    A YLEPWH DI  FL+L+KNTG EE RARD F  LWI D FM RVE +  WSL  
Sbjct: 275 RCATCAFYLEPWHKDILKFLDLRKNTGIEEERARDSFTALWINDLFMERVEKNEMWSLFD 334

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN  +GL D WG++F+ LY  YE
Sbjct: 335 PNIAKGLQDVWGDQFNKLYAYYE 357



 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 7/99 (7%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+F  M   F+  E+R LNK IFET+Y+GALEASCE+A + GPY  Y+GS  S
Sbjct: 489 IGVQGLADVFFLMGYSFESKEARDLNKMIFETLYFGALEASCELAQKHGPYSYYQGSMYS 548

Query: 653 QGILQYDMW-------GVTPTDLWDWAALKVLALVYGLK 684
           QGI  ++ +           + +W+W  L++    YG++
Sbjct: 549 QGIFHFEKFCEGRINVNEILSGMWNWEELRIKMKTYGVR 587



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 659 DMWGVTPTDLWDWAALKV-LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
           D+WG     L+ +    +    +   KLW  I+ SQIETGTPYM YKD CNR SNQ N+ 
Sbjct: 343 DVWGDQFNKLYAYYEETIERTTIPAQKLWKEIICSQIETGTPYMCYKDTCNRYSNQNNIG 402

Query: 718 VIE 720
            I+
Sbjct: 403 TIK 405


>gi|14581686|gb|AAK69359.1|AF132669_1 ribonucleotide reductase large subunit RR1 [shrimp white spot
           syndrome virus]
          Length = 848

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 260/478 (54%), Positives = 352/478 (73%), Gaps = 16/478 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA AIY+  WH D+ DF++ +KN G E+ R RDL   +W+ D FM RV++   WSLMC
Sbjct: 316 RRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLLPAIWVSDLFMERVKAGKNWSLMC 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD  GE+F  LY+KYEAEGK    V AR L+  I  ++IETGTPY+ +KD  N
Sbjct: 376 PHECPGLSDVHGEEFKALYEKYEAEGKGKEVVKARALFDQINSARIETGTPYVCFKDTIN 435

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PADKTY-NFTKL 265
           RKSNQ+N+G IK SNLCTEIV+Y+  +E AVCNLASIA+N ++     P+ + Y ++ ++
Sbjct: 436 RKSNQENVGIIKSSNLCTEIVQYSDSEETAVCNLASIAVNKFVKYFPIPSLRPYVDYREM 495

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K V KI+T+NL+K+IDVNFY V++ R SNM+ RP+G+GVQGLADLF ++R+PF+  E+ L
Sbjct: 496 KRVVKIMTRNLDKVIDVNFYAVDKTRISNMKTRPMGLGVQGLADLFFKLRIPFESEEAAL 555

Query: 326 LNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMW--GVTPTDLW---- 378
           +NK+IFETIYYGALEASCEIA   G  Y+ +EGSP+S+GI Q+DM    +   D++    
Sbjct: 556 INKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGIFQFDMGKENIKNRDIYFNSL 615

Query: 379 ---DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
              DW  L+  I K+GV NS+ +APMPTASTAQILGN+ESFEP TSN+Y+R VLSG FQV
Sbjct: 616 PIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQV 675

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN +++R+L++LG W+   K +++ + GSIQ +  IP+  K+L+KTVWEI  +T LDMA 
Sbjct: 676 VNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMAI 735

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            RG F+DQ+QSLN+++ E   +K+ SM  + W+ G+KT +YYLRTK AA A+QFT+DK
Sbjct: 736 QRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKT-LYYLRTKGAARAVQFTVDK 792



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 157/239 (65%), Gaps = 18/239 (7%)

Query: 736 MISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG--------FKYDMW--GVTPTDLW--- 782
           +I+ + +E I   A   +  I  ++   Y  F         F++DM    +   D++   
Sbjct: 555 LINKRIFETIYYGALEASCEIAKEKGETYELFEGSPLSKGIFQFDMGKENIKNRDIYFNS 614

Query: 783 ----DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
               DW  L+  I K+GV NS+ +APMPTASTAQILGN+ESFEP TSN+Y+R VLSG FQ
Sbjct: 615 LPIHDWEQLRRDIMKYGVHNSMFVAPMPTASTAQILGNSESFEPLTSNMYNRNVLSGSFQ 674

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           VVN +++R+L++LG W+   K +++ + GSIQ +  IP+  K+L+KTVWEI  +T LDMA
Sbjct: 675 VVNEYVIRELIKLGEWNSVTKQRIMASGGSIQTLPNIPKSTKELFKTVWEINPRTTLDMA 734

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
             RG F+DQ+QSLN+++ E   +K+ SM  + W+ G+KT +YYLRTK AA A+QFT+DK
Sbjct: 735 IQRGMFVDQAQSLNLFVEEPELSKVRSMTMYAWEKGIKT-LYYLRTKGAARAVQFTVDK 792



 Score =  110 bits (274), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 60/86 (69%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA AIY+  WH D+ DF++ +KN G E+ R RDL   +W+ D FM RV++   WSLMC
Sbjct: 316 RRGAAAIYISDWHLDVKDFIDCRKNAGNEDLRTRDLLPAIWVSDLFMERVKAGKNWSLMC 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD  GE+F  LY+KYEAEG
Sbjct: 376 PHECPGLSDVHGEEFKALYEKYEAEG 401



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 10/101 (9%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPV 651
           +GVQGLADLF ++R+PF+  E+ L+NK+IFETIYYGALEASCEIA   G  Y+ +EGSP+
Sbjct: 532 LGVQGLADLFFKLRIPFESEEAALINKRIFETIYYGALEASCEIAKEKGETYELFEGSPL 591

Query: 652 SQGILQYDMW--GVTPTDLW-------DWAALKVLALVYGL 683
           S+GI Q+DM    +   D++       DW  L+   + YG+
Sbjct: 592 SKGIFQFDMGKENIKNRDIYFNSLPIHDWEQLRRDIMKYGV 632



 Score = 45.1 bits (105), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +V    L+  I  ++IETGTPY+ +KD  NRKSNQ+N+ +I+
Sbjct: 406 VVKARALFDQINSARIETGTPYVCFKDTINRKSNQENVGIIK 447


>gi|13242650|ref|NP_077665.1| EsV-1-180 [Ectocarpus siliculosus virus 1]
 gi|13177450|gb|AAK14594.1|AF204951_179 EsV-1-180 [Ectocarpus siliculosus virus 1]
          Length = 765

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/476 (53%), Positives = 343/476 (72%), Gaps = 4/476 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLE WH DI +FL+LKKN G E  RARDLFYGLW+ D FMRRV++D  W+L+ 
Sbjct: 286 RKGSFAMYLEVWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDWTLLS 345

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D  G  FD  YKKYE+ G   + + AR L+  +++SQIETG PY L+KDACN
Sbjct: 346 PSDAPDLIDLHGADFDQAYKKYESNG-IGKTIKARTLFAKVVESQIETGGPYYLFKDACN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ++LGTI+ SNLC E+++Y+SK+E+AVCNLASI L  ++  AD+T++F +L   AK
Sbjct: 405 AKSNQRHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVR-ADRTFDFERLHRTAK 463

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
              KNLNK+IDVNFYP+EE R SNM+HRP G+GVQ L D+++ M  PF+  E+  LNKQI
Sbjct: 464 QAIKNLNKVIDVNFYPLEECRLSNMKHRPCGLGVQALHDVYMVMGFPFESEEAATLNKQI 523

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+G++EAS E A  DGPY++++GSP S G LQ+D+WG    D   DW   K  + K
Sbjct: 524 FETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDDSRHDWTKTKADLQK 583

Query: 390 HGVRNSLLIAPMPTASTAQIL-GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +G+RNSLL A MPTAS+A    G  E+ E  T+ +Y+RRVLSGEF +VN +L+++L+ LG
Sbjct: 584 YGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIKELINLG 643

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LWD  MK+ +I   GS+Q IE IP+K + L+K VWE+ QK +++ AA RG +IDQSQS+N
Sbjct: 644 LWDGEMKNAIIRGGGSVQGIESIPEKTRTLFKNVWEVSQKAIIEQAAARGPYIDQSQSMN 703

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
           I+      AK+SS  ++GW+LGLKT  YY+R++P A+ +QFT+   K  N   +K+
Sbjct: 704 IFFERPTMAKISSALYYGWELGLKTASYYVRSRPVADPVQFTVSSEKSVNEEDAKE 759



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 139/206 (67%), Gaps = 2/206 (0%)

Query: 765 NFFGFKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL-GNNESFEP 822
           +F   ++D+WG    D   DW   K  + K+G+RNSLL A MPTAS+A    G  E+ E 
Sbjct: 554 SFGKLQFDLWGHEVDDSRHDWTKTKADLQKYGMRNSLLTALMPTASSASFCSGGTEAAEC 613

Query: 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 882
            T+ +Y+RRVLSGEF +VN +L+++L+ LGLWD  MK+ +I   GS+Q IE IP+K + L
Sbjct: 614 STAVLYNRRVLSGEFPIVNKYLIKELINLGLWDGEMKNAIIRGGGSVQGIESIPEKTRTL 673

Query: 883 YKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYL 942
           +K VWE+ QK +++ AA RG +IDQSQS+NI+      AK+SS  ++GW+LGLKT  YY+
Sbjct: 674 FKNVWEVSQKAIIEQAAARGPYIDQSQSMNIFFERPTMAKISSALYYGWELGLKTASYYV 733

Query: 943 RTKPAANAIQFTIDKTKMANAMASKD 968
           R++P A+ +QFT+   K  N   +K+
Sbjct: 734 RSRPVADPVQFTVSSEKSVNEEDAKE 759



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 62/87 (71%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLE WH DI +FL+LKKN G E  RARDLFYGLW+ D FMRRV++D  W+L+ 
Sbjct: 286 RKGSFAMYLEVWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMRRVKADGDWTLLS 345

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D  G  FD  YKKYE+ G+
Sbjct: 346 PSDAPDLIDLHGADFDQAYKKYESNGI 372



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 584 CRRDNKED--C-IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           CR  N +   C +GVQ L D+++ M  PF+  E+  LNKQIFETIY+G++EAS E A  D
Sbjct: 483 CRLSNMKHRPCGLGVQALHDVYMVMGFPFESEEAATLNKQIFETIYHGSVEASIERAKID 542

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
           GPY++++GSP S G LQ+D+WG    D   DW   K     YG++
Sbjct: 543 GPYESFQGSPASFGKLQFDLWGHEVDDSRHDWTKTKADLQKYGMR 587



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 28/35 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           L+  +++SQIETG PY L+KDACN KSNQ++L  I
Sbjct: 381 LFAKVVESQIETGGPYYLFKDACNAKSNQRHLGTI 415


>gi|448825571|ref|YP_007418502.1| ribonucleoside-diphosphate reductase large subunit [Megavirus lba]
 gi|444236756|gb|AGD92526.1| ribonucleoside-diphosphate reductase large subunit [Megavirus lba]
          Length = 881

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 247/471 (52%), Positives = 345/471 (73%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +G +F++ Y  YE  GK+++Q+ AR LWF I+++QIETG PY+++KDA N
Sbjct: 425 PSECPNIVGKYGTEFNETYLSYEKSGKYMKQISARDLWFKIMETQIETGVPYIVFKDAVN 484

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ N+G I  SNLC+EIVEY+S DE A CNL+SI L  +I   +    +++  L+ V
Sbjct: 485 YKSNQINIGVINGSNLCSEIVEYSSADEYATCNLSSICLPRFIIHKNGVPEFDYDMLRKV 544

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           + I+T+NLN +ID+NFYPV++ R SN++HRPIG+GVQG+AD+F   + PFD   +R LN+
Sbjct: 545 SGIMTRNLNNVIDINFYPVDKTRVSNIKHRPIGVGVQGVADVFAIFKTPFDSELARDLNR 604

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G LE S +++   G Y+T+ GSP+S+G  Q+D+W ++    + +WDW +L  
Sbjct: 605 KIFETIYFGCLEESMKLSKEFGAYETFIGSPLSKGKFQFDLWNLSSDKLSGMWDWDSLMI 664

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            I K+GVRNSL    MPTAST+QI+G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 665 DIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTENIYSRSTLAGDYYVINKYLVQDLI 724

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LGLW+ +M D +    GSI  I  IPQ +KD+Y+TVWEIPQK++++MAA+R  FIDQ+Q
Sbjct: 725 DLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRTVWEIPQKSIIEMAAERAPFIDQTQ 784

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           S+NI++   ++AK++S   +  KLGLKTGMYYLR+K A +A QF ID  K+
Sbjct: 785 SMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSKAATSADQFGIDIDKI 835



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 144/195 (73%), Gaps = 3/195 (1%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++    + +WDW +L   I K+GVRNSL    MPTAST+QI+G NE  EP+T 
Sbjct: 641 FQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTE 700

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL++LGLW+ +M D +    GSI  I  IPQ +KD+Y+T
Sbjct: 701 NIYSRSTLAGDYYVINKYLVQDLIDLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRT 760

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAA+R  FIDQ+QS+NI++   ++AK++S   +  KLGLKTGMYYLR+K
Sbjct: 761 VWEIPQKSIIEMAAERAPFIDQTQSMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSK 820

Query: 946 PAANAIQFTIDKTKM 960
            A +A QF ID  K+
Sbjct: 821 AATSADQFGIDIDKI 835



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +G +F++ Y  YE  G
Sbjct: 425 PSECPNIVGKYGTEFNETYLSYEKSG 450



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQG+AD+F   + PFD   +R LN++IFETIY+G LE S +++   G Y+T+ GSP+S
Sbjct: 578 VGVQGVADVFAIFKTPFDSELARDLNRKIFETIYFGCLEESMKLSKEFGAYETFIGSPLS 637

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W ++    + +WDW +L +    YG++
Sbjct: 638 KGKFQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVR 672



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 29/35 (82%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+++KDA N KSNQ N+ VI
Sbjct: 461 LWFKIMETQIETGVPYIVFKDAVNYKSNQINIGVI 495



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             V+ EL+N +NK  G   P++SD  Y+ + KN D +N  I Y  D+ ++ FGF+
Sbjct: 169 FHVVSELHNNINK-NGIHAPIVSDGFYKFVKKNRDEINKHINYQLDYGFSIFGFR 222


>gi|371943944|gb|AEX61772.1| ribonucleoside-diphosphate reductase large subunit [Megavirus
           courdo7]
          Length = 881

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/471 (52%), Positives = 345/471 (73%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +G +F++ Y  YE  GK+++Q+ AR LWF I+++QIETG PY+++KDA N
Sbjct: 425 PSECPNIVGKYGTEFNEAYLSYEKSGKYMKQISARDLWFKIMETQIETGVPYIVFKDAVN 484

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ N+G I  SNLC+EIVEY+S DE A CNL+SI L  +I   +    +++  L+ V
Sbjct: 485 YKSNQINIGVINGSNLCSEIVEYSSADEYATCNLSSICLPRFIIHKNGVPEFDYDMLRKV 544

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           + I+T+NLN +ID+NFYPV++ R SN++HRPIG+GVQG+AD+F   + PFD   +R LN+
Sbjct: 545 SGIMTRNLNNVIDINFYPVDKTRVSNIKHRPIGVGVQGVADVFAIFKTPFDSKLARDLNR 604

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G LE S +++   G Y+T+ GSP+S+G  Q+D+W ++    + +WDW +L  
Sbjct: 605 KIFETIYFGCLEESMKLSKEFGAYETFIGSPLSKGKFQFDLWNLSSDKLSGMWDWDSLMI 664

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            I K+GVRNSL    MPTAST+QI+G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 665 DIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTENIYSRSTLAGDYYVINKYLVQDLI 724

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LGLW+ +M D +    GSI  I  IPQ +KD+Y+TVWEIPQK++++MAA+R  FIDQ+Q
Sbjct: 725 DLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRTVWEIPQKSIIEMAAERAPFIDQTQ 784

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           S+NI++   ++AK++S   +  KLGLKTGMYYLR+K A +A QF ID  K+
Sbjct: 785 SMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSKAATSADQFGIDIDKI 835



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 144/195 (73%), Gaps = 3/195 (1%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++    + +WDW +L   I K+GVRNSL    MPTAST+QI+G NE  EP+T 
Sbjct: 641 FQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTE 700

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL++LGLW+ +M D +    GSI  I  IPQ +KD+Y+T
Sbjct: 701 NIYSRSTLAGDYYVINKYLVQDLIDLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRT 760

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAA+R  FIDQ+QS+NI++   ++AK++S   +  KLGLKTGMYYLR+K
Sbjct: 761 VWEIPQKSIIEMAAERAPFIDQTQSMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSK 820

Query: 946 PAANAIQFTIDKTKM 960
            A +A QF ID  K+
Sbjct: 821 AATSADQFGIDIDKI 835



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +G +F++ Y  YE  G
Sbjct: 425 PSECPNIVGKYGTEFNEAYLSYEKSG 450



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQG+AD+F   + PFD   +R LN++IFETIY+G LE S +++   G Y+T+ GSP+S
Sbjct: 578 VGVQGVADVFAIFKTPFDSKLARDLNRKIFETIYFGCLEESMKLSKEFGAYETFIGSPLS 637

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W ++    + +WDW +L +    YG++
Sbjct: 638 KGKFQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVR 672



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 29/35 (82%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+++KDA N KSNQ N+ VI
Sbjct: 461 LWFKIMETQIETGVPYIVFKDAVNYKSNQINIGVI 495



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             V+ EL+N +NK  G   P++SD  Y+ + KN D +N  I Y  D+ ++ FGF+
Sbjct: 169 FHVVSELHNNINK-NGIHAPIVSDGFYKFVKKNRDEINKHINYQLDYGFSIFGFR 222


>gi|425701505|gb|AFX92667.1| ribonucleoside-diphosphate reductase large subunit [Megavirus
           courdo11]
          Length = 881

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/471 (52%), Positives = 345/471 (73%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +G +F++ Y  YE  GK+++Q+ AR LWF I+++QIETG PY+++KDA N
Sbjct: 425 PSECPNIVGKYGTEFNEAYLSYEKSGKYMKQISARDLWFKIMETQIETGVPYIVFKDAVN 484

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ N+G I  SNLC+EIVEY+S DE A CNL+SI L  +I   +    +++  L+ V
Sbjct: 485 YKSNQINIGVINGSNLCSEIVEYSSADEYATCNLSSICLPRFIIHKNGVPEFDYDMLRKV 544

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           + I+T+NLN +ID+NFYPV++ R SN++HRPIG+GVQG+AD+F   + PFD   +R LN+
Sbjct: 545 SGIMTRNLNNVIDINFYPVDKTRISNIKHRPIGVGVQGVADVFAIFKTPFDSELARDLNR 604

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G LE S +++   G Y+T+ GSP+S+G  Q+D+W ++    + +WDW +L  
Sbjct: 605 KIFETIYFGCLEESMKLSKEFGAYETFIGSPLSKGKFQFDLWNLSSDKLSGMWDWDSLMI 664

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            I K+GVRNSL    MPTAST+QI+G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 665 DIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTENIYSRSTLAGDYYVINKYLVQDLI 724

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LGLW+ +M D +    GSI  I  IPQ +KD+Y+TVWEIPQK++++MAA+R  FIDQ+Q
Sbjct: 725 DLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRTVWEIPQKSIIEMAAERAPFIDQTQ 784

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           S+NI++   ++AK++S   +  KLGLKTGMYYLR+K A +A QF ID  K+
Sbjct: 785 SMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSKAATSADQFGIDIDKI 835



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 144/195 (73%), Gaps = 3/195 (1%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++    + +WDW +L   I K+GVRNSL    MPTAST+QI+G NE  EP+T 
Sbjct: 641 FQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTE 700

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL++LGLW+ +M D +    GSI  I  IPQ +KD+Y+T
Sbjct: 701 NIYSRSTLAGDYYVINKYLVQDLIDLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRT 760

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAA+R  FIDQ+QS+NI++   ++AK++S   +  KLGLKTGMYYLR+K
Sbjct: 761 VWEIPQKSIIEMAAERAPFIDQTQSMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSK 820

Query: 946 PAANAIQFTIDKTKM 960
            A +A QF ID  K+
Sbjct: 821 AATSADQFGIDIDKI 835



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +G +F++ Y  YE  G
Sbjct: 425 PSECPNIVGKYGTEFNEAYLSYEKSG 450



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQG+AD+F   + PFD   +R LN++IFETIY+G LE S +++   G Y+T+ GSP+S
Sbjct: 578 VGVQGVADVFAIFKTPFDSELARDLNRKIFETIYFGCLEESMKLSKEFGAYETFIGSPLS 637

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W ++    + +WDW +L +    YG++
Sbjct: 638 KGKFQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVR 672



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 29/35 (82%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+++KDA N KSNQ N+ VI
Sbjct: 461 LWFKIMETQIETGVPYIVFKDAVNYKSNQINIGVI 495



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             V+ EL+N +NK  G   P++SD  Y+ + KN D +N  I Y  D+ ++ FGF+
Sbjct: 169 FHVVSELHNNINK-NGIHAPIVSDGFYKFVKKNRDEINKHINYQLDYGFSIFGFR 222


>gi|363540886|ref|YP_004894644.1| mg593 gene product [Megavirus chiliensis]
 gi|350612051|gb|AEQ33495.1| ribonucleoside-diphosphate reductase large subunit [Megavirus
           chiliensis]
          Length = 881

 Score =  534 bits (1375), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 247/471 (52%), Positives = 345/471 (73%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C  +   +G +F++ Y  YE  GK+++Q+ AR LWF I+++QIETG PY+++KDA N
Sbjct: 425 PSECPNIVGKYGTEFNETYLSYEKSGKYMKQISARDLWFKIMETQIETGVPYIVFKDAVN 484

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ N+G I  SNLC+EIVEY+S DE A CNL+SI L  +I   +    +++  L+ V
Sbjct: 485 YKSNQINVGVINGSNLCSEIVEYSSADEYATCNLSSICLPRFIIHKNGVPEFDYDMLRKV 544

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           + I+T+NLN +ID+NFYPV++ R SN++HRPIG+GVQG+AD+F   + PFD   +R LN+
Sbjct: 545 SGIMTRNLNNVIDINFYPVDKTRVSNIKHRPIGVGVQGVADVFAIFKTPFDSELARDLNR 604

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP---TDLWDWAALKE 385
           +IFETIY+G LE S +++   G Y+T+ GSP+S+G  Q+D+W ++    + +WDW +L  
Sbjct: 605 KIFETIYFGCLEESMKLSKEFGAYETFIGSPLSKGKFQFDLWNLSSDKLSGMWDWDSLMI 664

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
            I K+GVRNSL    MPTAST+QI+G NE  EP+T NIYSR  L+G++ V+N +L++DL+
Sbjct: 665 DIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTENIYSRSTLAGDYYVINKYLVQDLI 724

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LGLW+ +M D +    GSI  I  IPQ +KD+Y+TVWEIPQK++++MAA+R  FIDQ+Q
Sbjct: 725 DLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRTVWEIPQKSIIEMAAERAPFIDQTQ 784

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
           S+NI++   ++AK++S   +  KLGLKTGMYYLR+K A +A QF ID  K+
Sbjct: 785 SMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSKAATSADQFGIDIDKI 835



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/195 (51%), Positives = 144/195 (73%), Gaps = 3/195 (1%)

Query: 769 FKYDMWGVTP---TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
           F++D+W ++    + +WDW +L   I K+GVRNSL    MPTAST+QI+G NE  EP+T 
Sbjct: 641 FQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVRNSLTTTCMPTASTSQIMGYNECIEPFTE 700

Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
           NIYSR  L+G++ V+N +L++DL++LGLW+ +M D +    GSI  I  IPQ +KD+Y+T
Sbjct: 701 NIYSRSTLAGDYYVINKYLVQDLIDLGLWNSDMIDLIKYYRGSISKIPTIPQHIKDIYRT 760

Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
           VWEIPQK++++MAA+R  FIDQ+QS+NI++   ++AK++S   +  KLGLKTGMYYLR+K
Sbjct: 761 VWEIPQKSIIEMAAERAPFIDQTQSMNIFIESPSFAKLNSCLLYAHKLGLKTGMYYLRSK 820

Query: 946 PAANAIQFTIDKTKM 960
            A +A QF ID  K+
Sbjct: 821 AATSADQFGIDIDKI 835



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIY+EPWH DI+ FL+LKKNTG E  RARDLF GL I D F+ RV  D  WSLMC
Sbjct: 365 RAGSFAIYIEPWHADIYFFLDLKKNTGAETERARDLFLGLMINDIFIERVREDGVWSLMC 424

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  +   +G +F++ Y  YE  G
Sbjct: 425 PSECPNIVGKYGTEFNETYLSYEKSG 450



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQG+AD+F   + PFD   +R LN++IFETIY+G LE S +++   G Y+T+ GSP+S
Sbjct: 578 VGVQGVADVFAIFKTPFDSELARDLNRKIFETIYFGCLEESMKLSKEFGAYETFIGSPLS 637

Query: 653 QGILQYDMWGVTP---TDLWDWAALKVLALVYGLK 684
           +G  Q+D+W ++    + +WDW +L +    YG++
Sbjct: 638 KGKFQFDLWNLSSDKLSGMWDWDSLMIDIQKYGVR 672



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 29/35 (82%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LWF I+++QIETG PY+++KDA N KSNQ N+ VI
Sbjct: 461 LWFKIMETQIETGVPYIVFKDAVNYKSNQINVGVI 495



 Score = 48.5 bits (114), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 716 LEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
             V+ EL+N +NK  G   P++SD  Y+ + KN D +N  I Y  D+ ++ FGF+
Sbjct: 169 FHVVSELHNNINK-NGIHAPIVSDGFYKFVKKNRDEINKHINYQLDYGFSIFGFR 222


>gi|357289663|gb|AET72976.1| ribonucleoside-diphosphate reductase [Phaeocystis globosa virus
           12T]
 gi|357292461|gb|AET73797.1| ribonucleoside-diphosphate reductase [Phaeocystis globosa virus
           14T]
          Length = 835

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/526 (50%), Positives = 345/526 (65%), Gaps = 62/526 (11%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI +FLEL+KN G EE +ARDLFY +W  D FM RV  +  WSL C
Sbjct: 291 RNGSFAMYLEPHHPDIEEFLELRKNHGDEESKARDLFYAIWASDVFMERVIGNKIWSLFC 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GLSD +GE +  LY KYE+EG++ +Q+ AR LW  ILD+Q+ETGTPY+LYKDACN
Sbjct: 351 PDKCPGLSDCYGEDYRTLYMKYESEGRYNKQINARDLWLKILDAQMETGTPYILYKDACN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EIVEY+   E AVCNLASI L M++N  DKT+++ KL DV K
Sbjct: 411 SKSNQKNLGTIKSSNLCCEIVEYSDDKETAVCNLASIGLGMFVN-EDKTFDYVKLADVTK 469

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           ++  NLN IIDVNFYP ++   SN RHRP+GIGVQGLAD F +M + F   E++ +NK I
Sbjct: 470 VLVTNLNNIIDVNFYPNKKTSRSNYRHRPVGIGVQGLADTFFKMDIAFTSEEAKTVNKYI 529

Query: 331 FETIYYGALEASCEIAARDGPYQTY----------------------------------- 355
           FETIY+ ALE S +I+   G    Y                                   
Sbjct: 530 FETIYFAALEKSNDISRERGEGMEYLKTEYVAKKWSFTDQEPDCRTYVISDETDVKLAAQ 589

Query: 356 --EGSPVSQGI--LQYDMWGVTPT-------------DLW---------DWAALKEKIAK 389
             E  P+   I  L   + G   +             DLW         DW  L+ KI K
Sbjct: 590 LKECKPIKSEIDDLNAGLMGAYSSFIGSPISNGQFQFDLWNEKPCSDRYDWDTLRAKIVK 649

Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
           HG+RNSLL APMPTAST+QILGNNE FEP TSNIYSR+ L+GEF +VN +L+ +L+ L L
Sbjct: 650 HGIRNSLLCAPMPTASTSQILGNNECFEPITSNIYSRKTLAGEFTMVNKYLVDELLALKL 709

Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
           WD+++K+ +I N GS+Q I+G+P+ +K+ YK VWEI  KT++DMA DRG +I QSQS+N+
Sbjct: 710 WDESVKNNIIANKGSVQYIDGLPEHIKEKYKIVWEIKMKTLIDMARDRGLYICQSQSMNL 769

Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           +M +     +++MHF+GW+ GLKTG+YYLR KP  +A QFTI+  K
Sbjct: 770 WMEDPEPKSLTNMHFYGWRAGLKTGIYYLRRKPKHHAQQFTIEPEK 815



 Score =  240 bits (612), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/261 (46%), Positives = 175/261 (67%), Gaps = 21/261 (8%)

Query: 717 EVIEELYNMVNKETGTRTPMISD----------KHYEIIMKNADRLNSAIIYDRDFNYNF 766
           E + + ++  ++E   RT +ISD          K  + I    D LN+ ++       +F
Sbjct: 558 EYVAKKWSFTDQEPDCRTYVISDETDVKLAAQLKECKPIKSEIDDLNAGLMGAYS---SF 614

Query: 767 FG-------FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNE 818
            G       F++D+W   P +D +DW  L+ KI KHG+RNSLL APMPTAST+QILGNNE
Sbjct: 615 IGSPISNGQFQFDLWNEKPCSDRYDWDTLRAKIVKHGIRNSLLCAPMPTASTSQILGNNE 674

Query: 819 SFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQK 878
            FEP TSNIYSR+ L+GEF +VN +L+ +L+ L LWD+++K+ +I N GS+Q I+G+P+ 
Sbjct: 675 CFEPITSNIYSRKTLAGEFTMVNKYLVDELLALKLWDESVKNNIIANKGSVQYIDGLPEH 734

Query: 879 LKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938
           +K+ YK VWEI  KT++DMA DRG +I QSQS+N++M +     +++MHF+GW+ GLKTG
Sbjct: 735 IKEKYKIVWEIKMKTLIDMARDRGLYICQSQSMNLWMEDPEPKSLTNMHFYGWRAGLKTG 794

Query: 939 MYYLRTKPAANAIQFTIDKTK 959
           +YYLR KP  +A QFTI+  K
Sbjct: 795 IYYLRRKPKHHAQQFTIEPEK 815



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 62/86 (72%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI +FLEL+KN G EE +ARDLFY +W  D FM RV  +  WSL C
Sbjct: 291 RNGSFAMYLEPHHPDIEEFLELRKNHGDEESKARDLFYAIWASDVFMERVIGNKIWSLFC 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GLSD +GE +  LY KYE+EG
Sbjct: 351 PDKCPGLSDCYGEDYRTLYMKYESEG 376



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LW  ILD+Q+ETGTPY+LYKDACN KSNQ+NL  I+
Sbjct: 387 LWLKILDAQMETGTPYILYKDACNSKSNQKNLGTIK 422



 Score = 56.2 bits (134), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTY 646
           IGVQGLAD F +M + F   E++ +NK IFETIY+ ALE S +I+   G    Y
Sbjct: 501 IGVQGLADTFFKMDIAFTSEEAKTVNKYIFETIYFAALEKSNDISRERGEGMEY 554



 Score = 42.4 bits (98), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKVLALVYGLKLWFAILDSQIETG-T 698
           G Y ++ GSP+S G  Q+D+W   P +D +DW  L+   + +G++   ++L + + T  T
Sbjct: 609 GAYSSFIGSPISNGQFQFDLWNEKPCSDRYDWDTLRAKIVKHGIR--NSLLCAPMPTAST 666

Query: 699 PYMLYKDACNR--KSNQQNLEVIEELYNMVNK 728
             +L  + C     SN  + + +   + MVNK
Sbjct: 667 SQILGNNECFEPITSNIYSRKTLAGEFTMVNK 698


>gi|299472902|emb|CBN80471.1| EsV-1-180 [Ectocarpus siliculosus]
          Length = 766

 Score =  530 bits (1366), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/463 (53%), Positives = 337/463 (72%), Gaps = 4/463 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLE WH DI +FL+LKKN G E  RARDLFYGLW+ D FM RV++D  W+L+ 
Sbjct: 286 RKGSFAMYLEMWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDWTLLS 345

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D  G  FD  Y+KYE++G   + + AR L+  +++SQIETG PY L+KD+CN
Sbjct: 346 PSDAPDLIDLHGADFDRAYEKYESDG-IGKTIKARTLFAKVVESQIETGGPYYLFKDSCN 404

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQQ+LGTI+ SNLC E+++Y+SK+E+AVCNLASI L  ++ P DKT++F +L   AK
Sbjct: 405 AKSNQQHLGTIRSSNLCAEVIQYSSKEEIAVCNLASINLVRHVKP-DKTFDFERLHKTAK 463

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
              KNLNK+ID NFYP+EE   SNM+HRP G+GVQ L D+F+ M  PF+  E+  LNKQI
Sbjct: 464 QAIKNLNKVIDANFYPLEECSLSNMKHRPCGLGVQALHDVFMVMGFPFESEEAATLNKQI 523

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD-LWDWAALKEKIAK 389
           FETIY+G++EAS E A  DGPY++++GSP S G LQ+D+WG    D   DW  ++  +  
Sbjct: 524 FETIYHGSVEASIERAKIDGPYESFQGSPASFGKLQFDLWGHEVDDSRHDWTKIRGDLKT 583

Query: 390 HGVRNSLLIAPMPTASTAQIL-GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +G+RNSLL A MPTAS+A    G  E+ E  T+ +Y+RRVLSGEF +VN +L+R+L++LG
Sbjct: 584 YGMRNSLLTALMPTASSASFCSGGTEAAECSTAVLYNRRVLSGEFPIVNKYLIRELIKLG 643

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LWD  MK+ +I   GS+Q IE IP+K + L+K VWE+ QK V++ AA RG +IDQSQS+N
Sbjct: 644 LWDGEMKNAIIRGGGSVQGIESIPEKTRMLFKNVWEVSQKAVIEQAAARGPYIDQSQSMN 703

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           I+      AK+SS  F+GWKLGLKT  YY+R++P A+ +QFT+
Sbjct: 704 IFFERPTVAKISSALFYGWKLGLKTASYYVRSRPVADPVQFTV 746



 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 95/193 (49%), Positives = 135/193 (69%), Gaps = 2/193 (1%)

Query: 765 NFFGFKYDMWGVTPTD-LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL-GNNESFEP 822
           +F   ++D+WG    D   DW  ++  +  +G+RNSLL A MPTAS+A    G  E+ E 
Sbjct: 554 SFGKLQFDLWGHEVDDSRHDWTKIRGDLKTYGMRNSLLTALMPTASSASFCSGGTEAAEC 613

Query: 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 882
            T+ +Y+RRVLSGEF +VN +L+R+L++LGLWD  MK+ +I   GS+Q IE IP+K + L
Sbjct: 614 STAVLYNRRVLSGEFPIVNKYLIRELIKLGLWDGEMKNAIIRGGGSVQGIESIPEKTRML 673

Query: 883 YKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYL 942
           +K VWE+ QK V++ AA RG +IDQSQS+NI+      AK+SS  F+GWKLGLKT  YY+
Sbjct: 674 FKNVWEVSQKAVIEQAAARGPYIDQSQSMNIFFERPTVAKISSALFYGWKLGLKTASYYV 733

Query: 943 RTKPAANAIQFTI 955
           R++P A+ +QFT+
Sbjct: 734 RSRPVADPVQFTV 746



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 62/87 (71%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLE WH DI +FL+LKKN G E  RARDLFYGLW+ D FM RV++D  W+L+ 
Sbjct: 286 RKGSFAMYLEMWHADILEFLDLKKNNGNELMRARDLFYGLWVSDLFMHRVKADGDWTLLS 345

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D  G  FD  Y+KYE++G+
Sbjct: 346 PSDAPDLIDLHGADFDRAYEKYESDGI 372



 Score = 95.9 bits (237), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQ L D+F+ M  PF+  E+  LNKQIFETIY+G++EAS E A  DGPY++++GSP S
Sbjct: 495 LGVQALHDVFMVMGFPFESEEAATLNKQIFETIYHGSVEASIERAKIDGPYESFQGSPAS 554

Query: 653 QGILQYDMWGVTPTD-LWDWAALKVLALVYGLK 684
            G LQ+D+WG    D   DW  ++     YG++
Sbjct: 555 FGKLQFDLWGHEVDDSRHDWTKIRGDLKTYGMR 587



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 28/35 (80%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           L+  +++SQIETG PY L+KD+CN KSNQQ+L  I
Sbjct: 381 LFAKVVESQIETGGPYYLFKDSCNAKSNQQHLGTI 415


>gi|322510749|gb|ADX06063.1| putative ribonucleotide diphosphate reductase, large subunit
           [Organic Lake phycodnavirus 1]
          Length = 824

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/531 (48%), Positives = 356/531 (67%), Gaps = 67/531 (12%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWHGDI +FLEL+KN G EE RARDLFY LWIPD FMR++E D  W LMC
Sbjct: 285 RNGSFAMYLEPWHGDILEFLELRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWYLMC 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C+ L + +GE+F+ LY+ Y + G++++++ AR+LWF ILDSQ+ETGTPYMLYKDACN
Sbjct: 345 PHICKHLDNVYGEEFETLYESYVSSGQYLKKMKARELWFHILDSQMETGTPYMLYKDACN 404

Query: 211 RKSNQQ--------------------------NLGTIKCSNLCTE--------IVEYTSK 236
           +KSNQ+                          NL +I  S+   +        IV Y +K
Sbjct: 405 QKSNQKNIGTIKSSNLCCEIIEYSDKDESAVCNLASISLSSFVKKSKFKLNGPIVVY-AK 463

Query: 237 DEVAVCN-----LASIALN----------MY----------------INPADKTYNFTKL 265
           +    C+     L SI +N          MY                I+    T+++  L
Sbjct: 464 ENCKWCDYLKSFLDSIKINYEVVMDVRQTMYPQLYAGDKKIGGFSDVISLFKSTFDYNGL 523

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
             + K+VT+NLN+IIDVN+YP ++ R SN++HRPIGIGVQGLAD+F  + + FD +E++ 
Sbjct: 524 HKITKMVTENLNRIIDVNYYPTDKTRQSNLKHRPIGIGVQGLADVFAMLNIAFDSDEAKE 583

Query: 326 LNKQIFETIYYGALEASCEIAA-RDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 384
           +NK IFET+Y+ +LE S E+A  +   Y +++GSP+S+GILQ+DMW VTP+  +DW ALK
Sbjct: 584 INKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPLSEGILQFDMWNVTPSKRYDWGALK 643

Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
           + I K+G  NSL +APMPTAST+QIL NNE FEP+TSN+Y+RR L+GEF V+N HL+++L
Sbjct: 644 QNIIKYGTMNSLCMAPMPTASTSQILSNNECFEPFTSNMYTRRTLAGEFMVINKHLMKEL 703

Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
           ++L +W+ ++K+ ++   GSIQ I  IP  +K  YK VWE+  KT++DM+ DRGA+I QS
Sbjct: 704 IDLNIWNMSIKNDILKYKGSIQSIAEIPDYIKAKYKIVWEMSMKTIMDMSKDRGAYICQS 763

Query: 505 QSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
           QS+N+++ E NY  +++MH + WK GLKTGMYYLR K   +A QFT+   K
Sbjct: 764 QSMNLWVEEPNYKTLTNMHLYAWKCGLKTGMYYLRRKAKHHAQQFTVTPEK 814



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/191 (53%), Positives = 143/191 (74%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++DMW VTP+  +DW ALK+ I K+G  NSL +APMPTAST+QIL NNE FEP+TSN+Y
Sbjct: 624 LQFDMWNVTPSKRYDWGALKQNIIKYGTMNSLCMAPMPTASTSQILSNNECFEPFTSNMY 683

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR L+GEF V+N HL+++L++L +W+ ++K+ ++   GSIQ I  IP  +K  YK VWE
Sbjct: 684 TRRTLAGEFMVINKHLMKELIDLNIWNMSIKNDILKYKGSIQSIAEIPDYIKAKYKIVWE 743

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +  KT++DM+ DRGA+I QSQS+N+++ E NY  +++MH + WK GLKTGMYYLR K   
Sbjct: 744 MSMKTIMDMSKDRGAYICQSQSMNLWVEEPNYKTLTNMHLYAWKCGLKTGMYYLRRKAKH 803

Query: 949 NAIQFTIDKTK 959
           +A QFT+   K
Sbjct: 804 HAQQFTVTPEK 814



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWHGDI +FLEL+KN G EE RARDLFY LWIPD FMR++E D  W LMC
Sbjct: 285 RNGSFAMYLEPWHGDILEFLELRKNHGDEEMRARDLFYALWIPDLFMRKIEHDEDWYLMC 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C+ L + +GE+F+ LY+ Y + G
Sbjct: 345 PHICKHLDNVYGEEFETLYESYVSSG 370



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAA-RDGPYQTYEGSPV 651
           IGVQGLAD+F  + + FD +E++ +NK IFET+Y+ +LE S E+A  +   Y +++GSP+
Sbjct: 560 IGVQGLADVFAMLNIAFDSDEAKEINKMIFETMYHASLEKSMEMAKEQQTQYASFKGSPL 619

Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYG 682
           S+GILQ+DMW VTP+  +DW ALK   + YG
Sbjct: 620 SEGILQFDMWNVTPSKRYDWGALKQNIIKYG 650



 Score = 66.6 bits (161), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 6/80 (7%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE------ELYNMVNKETGTRTPMI 737
           +LWF ILDSQ+ETGTPYMLYKDACN+KSNQ+N+  I+      E+    +K+      + 
Sbjct: 380 ELWFHILDSQMETGTPYMLYKDACNQKSNQKNIGTIKSSNLCCEIIEYSDKDESAVCNLA 439

Query: 738 SDKHYEIIMKNADRLNSAII 757
           S      + K+  +LN  I+
Sbjct: 440 SISLSSFVKKSKFKLNGPIV 459


>gi|298707147|emb|CBJ29920.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 821

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 224/347 (64%), Positives = 287/347 (82%)

Query: 124 RDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVP 183
           RDLFYGLWIPD FM RVE D +WSLMCP+ C GLS+ WG++F++LY KYE EGK++R+V 
Sbjct: 475 RDLFYGLWIPDLFMERVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYEREGKYMRKVR 534

Query: 184 ARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCN 243
           A+ LWFAILD+Q ETG PYM+YKDACNRKSN ++LGTI+ SNLCTEIVEYT   EVAVCN
Sbjct: 535 AQDLWFAILDAQTETGNPYMMYKDACNRKSNHKHLGTIQSSNLCTEIVEYTDPGEVAVCN 594

Query: 244 LASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303
           L S+ L  +++   K+++  +L +V K+  +NLNKIIDVN+YPVEEA++SN RHRP+GIG
Sbjct: 595 LGSVVLPKFVSEDGKSFDHQRLFEVTKVFVRNLNKIIDVNWYPVEEAQHSNARHRPMGIG 654

Query: 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG 363
           VQGLAD FI+MR+PF+   +R LN+ IFET+Y+ A+ ASCE+A ++GPY+T+EGSPVS+G
Sbjct: 655 VQGLADAFIKMRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSPVSKG 714

Query: 364 ILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 423
           I Q+DMWG TP+D WDWA+L+ ++AKHGVRNSLL+APMPTASTAQILG NE  EPYTSN+
Sbjct: 715 IFQFDMWGETPSDRWDWASLRTRVAKHGVRNSLLLAPMPTASTAQILGFNECIEPYTSNL 774

Query: 424 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 470
           Y+RRV +GEF VVN HL  DL+E+GLW  ++++QL+ + GSI  I G
Sbjct: 775 YARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASIAG 821



 Score =  159 bits (402), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 88/106 (83%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++DMWG TP+D WDWA+L+ ++AKHGVRNSLL+APMPTASTAQILG NE  EPYTSN+Y
Sbjct: 716 FQFDMWGETPSDRWDWASLRTRVAKHGVRNSLLLAPMPTASTAQILGFNECIEPYTSNLY 775

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 874
           +RRV +GEF VVN HL  DL+E+GLW  ++++QL+ + GSI  I G
Sbjct: 776 ARRVKAGEFIVVNPHLFTDLMEMGLWSPSVRNQLMASGGSIASIAG 821



 Score =  133 bits (335), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 75/92 (81%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD FI+MR+PF+   +R LN+ IFET+Y+ A+ ASCE+A ++GPY+T+EGSPVS
Sbjct: 653 IGVQGLADAFIKMRMPFESEGARALNRDIFETMYFAAMTASCELAEKEGPYETFEGSPVS 712

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GI Q+DMWG TP+D WDWA+L+     +G++
Sbjct: 713 KGIFQFDMWGETPSDRWDWASLRTRVAKHGVR 744



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 44/53 (83%)

Query: 34  RDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEG 86
           RDLFYGLWIPD FM RVE D +WSLMCP+ C GLS+ WG++F++LY KYE EG
Sbjct: 475 RDLFYGLWIPDLFMERVEQDGEWSLMCPSQCPGLSECWGKEFEELYTKYEREG 527



 Score = 63.9 bits (154), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K +  V    LWFAILD+Q ETG PYM+YKDACNRKSN ++L  I+
Sbjct: 528 KYMRKVRAQDLWFAILDAQTETGNPYMMYKDACNRKSNHKHLGTIQ 573



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
           V+Q ++Q    GVT  +L D  A +  A +      +A L ++I              R 
Sbjct: 211 VAQKVVQGIYSGVTTWEL-DTLAAETCAYMNTEHPHYARLAARISVSN--------LQRA 261

Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           ++    + +EEL+  V+ +TG +   ISD+ +EI+MKN D +++ + ++RDF+ +FFGFK
Sbjct: 262 TSPSFADTVEELHAYVDPKTGRQAGYISDEVHEIVMKNRDLIDAEVKHERDFSLDFFGFK 321


>gi|219118138|ref|XP_002179850.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408903|gb|EEC48836.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 926

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/501 (50%), Positives = 325/501 (64%), Gaps = 90/501 (17%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIYLEPWH DIFD L LKKN GKEE RARDLFYGLWIPD FM+RVE D  WSLMC
Sbjct: 364 RPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLWIPDLFMKRVEEDDVWSLMC 423

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+  +G KF+ LY+ YE EGKF+RQV AR+LW AIL+SQIETGTPYMLYKD CN
Sbjct: 424 PHQCPGLAHCYGAKFEALYQHYEQEGKFVRQVRARELWGAILESQIETGTPYMLYKDTCN 483

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY----------INPADKT- 259
            KSNQQN+GTI+CSNLCTEI++Y+ ++E AVCNLASI L  +          I+P   + 
Sbjct: 484 TKSNQQNIGTIQCSNLCTEIIQYSDQEETAVCNLASICLPRFVVSERGTFGSISPESGSA 543

Query: 260 -YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPF 318
            ++   L   AKIVT+NLN IIDVN YPV+ A+ SN +HRPIGIGV GLAD F+++ LPF
Sbjct: 544 FFDHEALHRAAKIVTRNLNSIIDVNSYPVDGAKTSNFKHRPIGIGVSGLADAFLRLGLPF 603

Query: 319 DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------ 372
               ++ LN+ IFETIY+ ALEAS E+A ++GPY+T+ GSP SQG LQ+++WG+      
Sbjct: 604 TSAAAKKLNEAIFETIYHAALEASAELAEKEGPYETFAGSPASQGKLQFNLWGLSDDETP 663

Query: 373 ---------TPTDL-----------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
                    TP  +           +DW +L+ +I K G+RNSL  A    +S       
Sbjct: 664 SHKYALAKETPVPIQMYPNSSNVCGYDWESLRRRIVKTGLRNSLSWASTSVSS------- 716

Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
                                               L     ++Q++ + GS+Q+I  IP
Sbjct: 717 ------------------------------------LSAQTFRNQMMRDGGSVQNIPDIP 740

Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLK 532
            +LK+LYKTVWEI  K ++DM ADRG FIDQ+ +++         K+++MHF+ WK GLK
Sbjct: 741 DRLKELYKTVWEIKMKDIIDMGADRGKFIDQNPNMD---------KLTAMHFYAWKKGLK 791

Query: 533 TGMYYLRTKPAANAIQFTIDK 553
           TGMYYLRTKPA NAIQ+T++K
Sbjct: 792 TGMYYLRTKPAVNAIQYTVEK 812



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 69/86 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIYLEPWH DIFD L LKKN GKEE RARDLFYGLWIPD FM+RVE D  WSLMC
Sbjct: 364 RPGAFAIYLEPWHADIFDVLSLKKNHGKEEQRARDLFYGLWIPDLFMKRVEEDDVWSLMC 423

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+  +G KF+ LY+ YE EG
Sbjct: 424 PHQCPGLAHCYGAKFEALYQHYEQEG 449



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 52/176 (29%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW +L+ +I K G+RNSL  A    +S                                
Sbjct: 689 YDWESLRRRIVKTGLRNSLSWASTSVSS-------------------------------- 716

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
                      L     ++Q++ + GS+Q+I  IP +LK+LYKTVWEI  K ++DM ADR
Sbjct: 717 -----------LSAQTFRNQMMRDGGSVQNIPDIPDRLKELYKTVWEIKMKDIIDMGADR 765

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
           G FIDQ+ +++         K+++MHF+ WK GLKTGMYYLRTKPA NAIQ+T++K
Sbjct: 766 GKFIDQNPNMD---------KLTAMHFYAWKKGLKTGMYYLRTKPAVNAIQYTVEK 812



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 57/72 (79%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGV GLAD F+++ LPF    ++ LN+ IFETIY+ ALEAS E+A ++GPY+T+ GSP S
Sbjct: 587 IGVSGLADAFLRLGLPFTSAAAKKLNEAIFETIYHAALEASAELAEKEGPYETFAGSPAS 646

Query: 653 QGILQYDMWGVT 664
           QG LQ+++WG++
Sbjct: 647 QGKLQFNLWGLS 658



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 35/46 (76%)

Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           K +  V   +LW AIL+SQIETGTPYMLYKD CN KSNQQN+  I+
Sbjct: 450 KFVRQVRARELWGAILESQIETGTPYMLYKDTCNTKSNQQNIGTIQ 495


>gi|269105097|ref|ZP_06157792.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268160732|gb|EEZ39230.1| ribonucleotide reductase of class Ia (aerobic) alpha subunit
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 647

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 219/382 (57%), Positives = 290/382 (75%), Gaps = 2/382 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 257 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFS 316

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+  +GLSD +G +F   Y++YE  G  ++ + AR+L   I++SQ ETGTPYMLYKDACN
Sbjct: 317 PHNTKGLSDLYGAEFTQKYQEYERMGLGVKTIKARQLMTQIIESQAETGTPYMLYKDACN 376

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLGTIK SNLC EI+E ++ DE A CNLAS+AL  ++   +  ++F KL  V K
Sbjct: 377 EKSNQKNLGTIKSSNLCAEIMEVSTPDETAACNLASLALPKFVT--NTGFDFDKLHQVTK 434

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +  KNL+++IDVN++P ++   SN  HRP+G+G+QGLAD+F +M LPFD  E+ LLN+ I
Sbjct: 435 VAIKNLDRVIDVNYHPTDKIEKSNHAHRPVGLGIQGLADVFFKMHLPFDSEEALLLNRDI 494

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
            ET+Y+ +LEASCEIA + G Y +Y+GSP+S G  Q+D+W   P+  WDW+ LK +IA+H
Sbjct: 495 AETMYHASLEASCEIAKQKGTYSSYDGSPISHGQFQFDLWCEQPSSRWDWSQLKHQIAEH 554

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           GVRNSLLIA MPTASTAQILGNNE+FE  TSNIY R+ LSGEF ++N +L+ DL + GLW
Sbjct: 555 GVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIYKRQTLSGEFIIINKYLVSDLEQRGLW 614

Query: 451 DDNMKDQLIVNNGSIQDIEGIP 472
              ++D +I+NNGS+Q I+ IP
Sbjct: 615 TSKIRDAIILNNGSVQGIDAIP 636



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 85/108 (78%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W   P+  WDW+ LK +IA+HGVRNSLLIA MPTASTAQILGNNE+FE  TSNIY
Sbjct: 529 FQFDLWCEQPSSRWDWSQLKHQIAEHGVRNSLLIAQMPTASTAQILGNNEAFEAQTSNIY 588

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 876
            R+ LSGEF ++N +L+ DL + GLW   ++D +I+NNGS+Q I+ IP
Sbjct: 589 KRQTLSGEFIIINKYLVSDLEQRGLWTSKIRDAIILNNGSVQGIDAIP 636



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 67/87 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEPWH DI  FL+L+KN GKEEFRARDLF  LW+PD FM RVE+DA+W+L  
Sbjct: 257 RKGSFAVYLEPWHADIESFLDLRKNHGKEEFRARDLFLALWVPDLFMERVETDAEWTLFS 316

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+  +GLSD +G +F   Y++YE  GL
Sbjct: 317 PHNTKGLSDLYGAEFTQKYQEYERMGL 343



 Score =  110 bits (275), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 74/106 (69%), Gaps = 2/106 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+QGLAD+F +M LPFD  E+ LLN+ I ET+Y+ +LEASCEIA + G Y +Y+GSP+S
Sbjct: 466 LGIQGLADVFFKMHLPFDSEEALLLNRDIAETMYHASLEASCEIAKQKGTYSSYDGSPIS 525

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGT 698
            G  Q+D+W   P+  WDW+ LK     +G++   ++L +Q+ T +
Sbjct: 526 HGQFQFDLWCEQPSSRWDWSQLKHQIAEHGVR--NSLLIAQMPTAS 569



 Score = 56.2 bits (134), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +L   I++SQ ETGTPYMLYKDACN KSNQ+NL  I+
Sbjct: 352 QLMTQIIESQAETGTPYMLYKDACNEKSNQKNLGTIK 388


>gi|111184258|gb|ABH08178.1| HSPV074b [Horsepox virus]
          Length = 440

 Score =  488 bits (1255), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/359 (64%), Positives = 285/359 (79%), Gaps = 11/359 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPG  AIYLEPWH DI  FL+ KKNTG E+ R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 87  RPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 146

Query: 151 PNTCRGLSDSWGEKFDDLY---KKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
            + C GL++ WG++F+ LY   K+ E +      + AR +W AI++SQIETGTP++LYKD
Sbjct: 147 LDECSGLNNVWGDEFERLYTIRKRKEIQD----YMKARVVWKAIIESQIETGTPFILYKD 202

Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
           ACN+KSNQQNLGTIKCSNLCTEI++Y   +EVAVCNLAS+ALNM++   D  ++F KLKD
Sbjct: 203 ACNKKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGQFDFFKLKD 260

Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
           V K++ +NLNKIID+N+YP+ +A  SN RHRPIGIGVQGLAD FI +  PFD  E++ LN
Sbjct: 261 VVKVIVRNLNKIIDINYYPIPKAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLN 320

Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
           K+IFET  YGAL+ASCE+A ++GPY++Y  S  S GILQYD+W V P+DLW+W  LK+KI
Sbjct: 321 KKIFET--YGALDASCELAEKEGPYESYVRSYASNGILQYDLWNVVPSDLWNWKPLKDKI 378

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
             +G+RNSLL+APMPTASTAQIL NNES +PYTSNIY+RRVLSGEFQVVN HLLR L E
Sbjct: 379 KTYGLRNSLLVAPMPTASTAQILENNESVKPYTSNIYTRRVLSGEFQVVNPHLLRVLTE 437



 Score =  133 bits (335), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 70/82 (85%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+W V P+DLW+W  LK+KI  +G+RNSLL+APMPTASTAQIL NNES +PYTSNIY
Sbjct: 356 LQYDLWNVVPSDLWNWKPLKDKIKTYGLRNSLLVAPMPTASTAQILENNESVKPYTSNIY 415

Query: 829 SRRVLSGEFQVVNHHLLRDLVE 850
           +RRVLSGEFQVVN HLLR L E
Sbjct: 416 TRRVLSGEFQVVNPHLLRVLTE 437



 Score =  119 bits (299), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 60/79 (75%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPG  AIYLEPWH DI  FL+ KKNTG E+ R RDLF  LWIPD FM+RV+ D +WSLMC
Sbjct: 87  RPGVMAIYLEPWHSDIMAFLDFKKNTGNEKHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 146

Query: 61  PNACRGLSDSWGEKFDDLY 79
            + C GL++ WG++F+ LY
Sbjct: 147 LDECSGLNNVWGDEFERLY 165



 Score =  114 bits (284), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 73/104 (70%), Gaps = 2/104 (1%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A I  + ++   IGVQGLAD FI +  PFD  E++ LNK+IFET  YGAL+ASCE+A ++
Sbjct: 283 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFET--YGALDASCELAEKE 340

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GPY++Y  S  S GILQYD+W V P+DLW+W  LK     YGL+
Sbjct: 341 GPYESYVRSYASNGILQYDLWNVVPSDLWNWKPLKDKIKTYGLR 384



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +W AI++SQIETGTP++LYKDACN+KSNQQNL  I+
Sbjct: 182 VWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 217


>gi|351714774|gb|EHB17693.1| Ribonucleoside-diphosphate reductase large subunit [Heterocephalus
           glaber]
          Length = 542

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/329 (68%), Positives = 274/329 (83%), Gaps = 1/329 (0%)

Query: 134 DEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILD 193
           D FM++VE++  W L+CPN C GL + WGE+F+ LY+ YE +G   R V A++LW+AI++
Sbjct: 207 DLFMKQVETNQDWPLICPNECPGLDEVWGEEFEMLYESYEEQGHVRRVVKAQQLWYAIIE 266

Query: 194 SQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI 253
           +Q ETGTPYMLYKD+ N+KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+AL MY+
Sbjct: 267 TQTETGTPYMLYKDSYNQKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALKMYV 326

Query: 254 NPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQ 313
             ++ TY+F KL +V K++ +NLNKII++N+YPV EA  SN  H PIGIGVQ LAD FI 
Sbjct: 327 -ISEHTYDFKKLAEVTKVIVRNLNKIININYYPVPEAHLSNKHHCPIGIGVQDLADTFIL 385

Query: 314 MRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT 373
           MR PF+  E++LLNKQIFETIYY ALEASC++A    PY+TYEGSPVS+GIL Y+MW VT
Sbjct: 386 MRYPFESPEAQLLNKQIFETIYYVALEASCDLAKEHDPYETYEGSPVSKGILWYEMWNVT 445

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
           PTDLWDW  LKEKIAK+G+RNSLLIAP+PTASTAQILGNNES EPYTSNIY+RR+LSGEF
Sbjct: 446 PTDLWDWKLLKEKIAKYGIRNSLLIAPIPTASTAQILGNNESIEPYTSNIYTRRILSGEF 505

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNN 462
           Q+ N HLL+DL E GLW++ MK+Q+I  N
Sbjct: 506 QIANPHLLKDLTEWGLWNEEMKNQIIACN 534



 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/96 (76%), Positives = 85/96 (88%)

Query: 771 YDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
           Y+MW VTPTDLWDW  LKEKIAK+G+RNSLLIAP+PTASTAQILGNNES EPYTSNIY+R
Sbjct: 439 YEMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPIPTASTAQILGNNESIEPYTSNIYTR 498

Query: 831 RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNN 866
           R+LSGEFQ+ N HLL+DL E GLW++ MK+Q+I  N
Sbjct: 499 RILSGEFQIANPHLLKDLTEWGLWNEEMKNQIIACN 534



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/100 (65%), Positives = 75/100 (75%), Gaps = 3/100 (3%)

Query: 588 NKEDC---IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQ 644
           NK  C   IGVQ LAD FI MR PF+  E++LLNKQIFETIYY ALEASC++A    PY+
Sbjct: 366 NKHHCPIGIGVQDLADTFILMRYPFESPEAQLLNKQIFETIYYVALEASCDLAKEHDPYE 425

Query: 645 TYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           TYEGSPVS+GIL Y+MW VTPTDLWDW  LK     YG++
Sbjct: 426 TYEGSPVSKGILWYEMWNVTPTDLWDWKLLKEKIAKYGIR 465



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
           +V+E LYN +N   G  +PM++    +I++ + DRLNSAIIYDRDF+YN+FGFK
Sbjct: 66  DVMEVLYNYINPHNGKHSPMVAQSTLDIVLSSKDRLNSAIIYDRDFSYNYFGFK 119



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 33/45 (73%)

Query: 44  DEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           D FM++VE++  W L+CPN C GL + WGE+F+ LY+ YE +G V
Sbjct: 207 DLFMKQVETNQDWPLICPNECPGLDEVWGEEFEMLYESYEEQGHV 251



 Score = 59.7 bits (143), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 676 VLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V  +V   +LW+AI+++Q ETGTPYMLYKD+ N+KSNQQNL  I+
Sbjct: 251 VRRVVKAQQLWYAIIETQTETGTPYMLYKDSYNQKSNQQNLGTIK 295


>gi|389799152|ref|ZP_10202155.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           sp. 116-2]
 gi|388443611|gb|EIL99753.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           sp. 116-2]
          Length = 806

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/509 (45%), Positives = 323/509 (63%), Gaps = 24/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D +WSL  
Sbjct: 319 RKGAACVYLESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFD 378

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       DSWGE FD  Y+K EA+G  ++ V AR+L+  ++ +  +TG  +M +KD CN
Sbjct: 379 PKVVPHFVDSWGEAFDAAYRKAEADGLAVKTVKARELYARMMRTLAQTGNGWMTFKDRCN 438

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +    I  SNLCTEI+E +S  E AVCNL S+ L  ++   D  ++F +L   
Sbjct: 439 ATSNQTAKPGNVIHLSNLCTEILEVSSATETAVCNLGSVNLARHV--VDGAFDFDQLAAT 496

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I  + LN++ID+N+YP++ AR +NM+ RP+G+GV GL D+F ++RLPFD  E+  L+ 
Sbjct: 497 VRIAVRQLNRVIDLNYYPIDTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALST 556

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E IY+ AL  SCE+A  DG +  +  S  + G LQ+D W   TP D+  W AL+E+I
Sbjct: 557 RIAEEIYFHALSQSCELAETDGAHPGFAESRAANGELQFDHWPNATPHDIARWDALRERI 616

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN HL  +L  L
Sbjct: 617 KQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRHLADELKTL 676

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW   ++D + +  GSIQ I  IP +L+ +Y+TVWE+PQK+++D+AA RGA+IDQSQSL
Sbjct: 677 GLWTPEIRDAIKLAEGSIQGIAAIPARLRAIYRTVWELPQKSLIDLAASRGAWIDQSQSL 736

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  ++SSM+ + WK G+KT  YYLR++PA          TK+A    S     
Sbjct: 737 NLFMENPNIGQLSSMYMYAWKSGIKT-TYYLRSRPA----------TKIAKTTVSA---- 781

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                +DQE+A AA+ C  +N E C   Q
Sbjct: 782 ----VSDQERANAAVFCSLENPEYCEACQ 806



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 145/229 (63%), Gaps = 20/229 (8%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W   TP D+  W AL+E+I +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 593 LQFDHWPNATPHDIARWDALRERIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 652

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F  VN HL  +L  LGLW   ++D + +  GSIQ I  IP +L+ +Y+TVW
Sbjct: 653 FKRETLSGDFLQVNRHLADELKTLGLWTPEIRDAIKLAEGSIQGIAAIPARLRAIYRTVW 712

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK+++D+AA RGA+IDQSQSLN++M   N  ++SSM+ + WK G+KT  YYLR++PA
Sbjct: 713 ELPQKSLIDLAASRGAWIDQSQSLNLFMENPNIGQLSSMYMYAWKSGIKT-TYYLRSRPA 771

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                     TK+A    S          +DQE+A AA+ C  +N E C
Sbjct: 772 ----------TKIAKTTVSA--------VSDQERANAAVFCSLENPEYC 802



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D +WSL  
Sbjct: 319 RKGAACVYLESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFD 378

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P       DSWGE FD  Y+K EA+GL 
Sbjct: 379 PKVVPHFVDSWGEAFDAAYRKAEADGLA 406



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+  L+ +I E IY+ AL  SCE+A  DG +  +  S  +
Sbjct: 530 LGVMGLQDVFFKLRLPFDSAEALALSTRIAEEIYFHALSQSCELAETDGAHPGFAESRAA 589

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W   TP D+  W AL+     +GL+
Sbjct: 590 NGELQFDHWPNATPHDIARWDALRERIKQHGLR 622


>gi|405354038|ref|ZP_11023447.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Chondromyces apiculatus DSM 436]
 gi|397092729|gb|EJJ23478.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Myxococcus sp. (contaminant ex DSM 436)]
          Length = 837

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/508 (44%), Positives = 334/508 (65%), Gaps = 11/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 339 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 398

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T    +D +G+ F+  Y K EA+G  +R+V AR L+  ++ S  +TG  +M +KD  N
Sbjct: 399 PKTVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLYARMMKSLAQTGNGWMTFKDISN 458

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  ++   I  SNLCTEI+E TS+ E AVCNL S+ L   +   D  ++F +L+  
Sbjct: 459 RKSNQTGKDGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMVK--DGKFDFERLRAN 516

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A++  + L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F Q++L FD  E+R L+K
Sbjct: 517 AQLAMRQLDRVIDLNYYPIPTAASSNQRWRPVGLGLMGLQDVFFQLKLAFDAPEARELSK 576

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           QI E IY+ AL  SCE+A + G + ++  +  ++G LQ+D WGV PTD+  W AL+++I 
Sbjct: 577 QISEEIYFAALTTSCEMAEQYGAHTSFPETRAAKGELQFDHWGVVPTDMARWDALRQRIM 636

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++ R  LSG+F  VN +L+RDL  LG
Sbjct: 637 KHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLVRDLQALG 696

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++N+++++ +  GS+QDI  +P+ L+ +Y+T WE+P +++LDM ADRGAFIDQSQSLN
Sbjct: 697 LWNENVRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSLLDMGADRGAFIDQSQSLN 756

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   N  K+SSM+F+ W+ GLKT  YYLR++PA    + T+     A+   +  A   
Sbjct: 757 LFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPATRIAKATVGAGGGASVAQAAPAPVA 815

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +  +A+      A+ C  +N E C   Q
Sbjct: 816 KATEAE------AVACSLENPEACEACQ 837



 Score =  217 bits (552), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 152/228 (66%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WGV PTD+  W AL+++I KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++
Sbjct: 613 LQFDHWGVVPTDMARWDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLF 672

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+RDL  LGLW++N+++++ +  GS+QDI  +P+ L+ +Y+T WE
Sbjct: 673 KRETLSGDFLQVNRYLVRDLQALGLWNENVRNRIKMAEGSVQDITELPENLRAVYRTAWE 732

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P +++LDM ADRGAFIDQSQSLN+++   N  K+SSM+F+ W+ GLKT  YYLR++PA 
Sbjct: 733 LPMRSLLDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPAT 791

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+     A+   +      +  +A+      A+ C  +N E C
Sbjct: 792 RIAKATVGAGGGASVAQAAPAPVAKATEAE------AVACSLENPEAC 833



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 59/98 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 339 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 398

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P      +D +G+ F+  Y K EA+GL   +  A  +Y
Sbjct: 399 PKTVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLY 436



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 62/92 (67%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q++L FD  E+R L+KQI E IY+ AL  SCE+A + G + ++  +  +
Sbjct: 550 LGLMGLQDVFFQLKLAFDAPEARELSKQISEEIYFAALTTSCEMAEQYGAHTSFPETRAA 609

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D WGV PTD+  W AL+   + +GL+
Sbjct: 610 KGELQFDHWGVVPTDMARWDALRQRIMKHGLR 641


>gi|408825289|ref|ZP_11210179.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           geniculata N1]
          Length = 800

 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/497 (45%), Positives = 320/497 (64%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+E+I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTARWDALRERIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW  +M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT +++A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSSAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  199 bits (505), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 140/221 (63%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+E+I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW  +M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT +++A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSSAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQG 396



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 SGELQFDAWNVVPEDTARWDALRERIKEHGLR 614


>gi|254521985|ref|ZP_05134040.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
 gi|219719576|gb|EED38101.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas sp. SKA14]
          Length = 800

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/497 (45%), Positives = 319/497 (64%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+E+I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTARWDALRERIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW  +M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSTAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 139/221 (62%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+E+I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW  +M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSTAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADVEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQG 396



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 SGELQFDAWNVVPEDTARWDALRERIKEHGLR 614


>gi|389774174|ref|ZP_10192321.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           spathiphylli B39]
 gi|388438589|gb|EIL95334.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           spathiphylli B39]
          Length = 812

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/509 (45%), Positives = 319/509 (62%), Gaps = 24/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D  WSL  
Sbjct: 325 RKGAACVYLESWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGDWSLFD 384

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       DSWGE FD  Y+K EA+G  ++ V AR+L+  ++ +  +TG  +M +KD CN
Sbjct: 385 PKVVPHFVDSWGEAFDAAYRKAEADGLAVKTVKARELYARMMRTLAQTGNGWMTFKDRCN 444

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +    I  SNLCTEI+E +S DE AVCNL S+ L  ++   D  +++ +L   
Sbjct: 445 ATSNQTAKTGNVIHLSNLCTEILEVSSVDETAVCNLGSVNLARHVT--DGAFDYDQLAAT 502

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + LN++ID+N+YP+  AR +NM+ RP+G+GV GL D+F ++RLPFD  E+  L+ 
Sbjct: 503 VRTAVRQLNRVIDLNYYPIATARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALST 562

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-VTPTDLWDWAALKEKI 387
           +I E IY+ AL  SCE+A  +G +  +  S  + G LQ+D W   TP D   W AL+E+I
Sbjct: 563 RIAEEIYFHALSQSCELARVEGAHPGFAESRAASGELQFDHWPQATPHDDTRWHALREQI 622

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN HL  +L  L
Sbjct: 623 RQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRHLADELKAL 682

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW  +++D + +  GSIQ I  IP++L+ +Y+TVWE+PQK ++++AA RGA+IDQSQSL
Sbjct: 683 GLWTSDIRDAIKLAEGSIQGIAAIPERLRAIYRTVWELPQKALIELAAARGAYIDQSQSL 742

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  ++SSM+ + WK G+KT  YYLR++PA          TK+A    S     
Sbjct: 743 NLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA----------TKIAKTTVSS---- 787

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                 DQ QA AA+ C  +N E C   Q
Sbjct: 788 ----LPDQAQATAAVFCSLENPEYCEACQ 812



 Score =  202 bits (513), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 143/229 (62%), Gaps = 20/229 (8%)

Query: 769 FKYDMWG-VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W   TP D   W AL+E+I +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 599 LQFDHWPQATPHDDTRWHALREQIRQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 658

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F  VN HL  +L  LGLW  +++D + +  GSIQ I  IP++L+ +Y+TVW
Sbjct: 659 FKRETLSGDFLQVNRHLADELKALGLWTSDIRDAIKLAEGSIQGIAAIPERLRAIYRTVW 718

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK ++++AA RGA+IDQSQSLN++M   N  ++SSM+ + WK G+KT  YYLR++PA
Sbjct: 719 ELPQKALIELAAARGAYIDQSQSLNLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA 777

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                     TK+A    S           DQ QA AA+ C  +N E C
Sbjct: 778 ----------TKIAKTTVSS--------LPDQAQATAAVFCSLENPEYC 808



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D  WSL  
Sbjct: 325 RKGAACVYLESWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGDWSLFD 384

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P       DSWGE FD  Y+K EA+GL 
Sbjct: 385 PKVVPHFVDSWGEAFDAAYRKAEADGLA 412



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+  L+ +I E IY+ AL  SCE+A  +G +  +  S  +
Sbjct: 536 LGVMGLQDVFFKLRLPFDSAEALALSTRIAEEIYFHALSQSCELARVEGAHPGFAESRAA 595

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W   TP D   W AL+     +GL+
Sbjct: 596 SGELQFDHWPQATPHDDTRWHALREQIRQHGLR 628


>gi|352086177|ref|ZP_08953756.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodanobacter
           sp. 2APBS1]
 gi|351679811|gb|EHA62945.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodanobacter
           sp. 2APBS1]
          Length = 806

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/509 (45%), Positives = 321/509 (63%), Gaps = 24/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D +WSL  
Sbjct: 319 RKGAACVYLESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFD 378

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       DSWGE FD  Y+K EA+G  ++ V AR+L+  ++ +  +TG  +M +KD CN
Sbjct: 379 PKVVPHFVDSWGEAFDAAYRKAEADGLAVKTVKARELYARMMRTLAQTGNGWMTFKDRCN 438

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +    I  SNLCTEI+E +S  E AVCNL S+ L  ++   D  ++F +L   
Sbjct: 439 ATSNQTAKPGNVIHLSNLCTEILEVSSATETAVCNLGSVNLARHV--VDGAFDFDQLAAT 496

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I  + LN++ID+N+YP++ AR +NM+ RP+G+GV GL D+F ++RLPFD  E+  L+ 
Sbjct: 497 VRIAVRQLNRVIDLNYYPIDTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSAEALALST 556

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E IY+ AL  SCE+A  +G +  +  S  + G LQ+D W    P D   W AL+E+I
Sbjct: 557 RIAEEIYFNALSQSCELAEAEGAHPGFAESRAANGELQFDHWPSAIPHDGARWNALRERI 616

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L  +L  L
Sbjct: 617 KQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLADELKTL 676

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW   ++D + +  GSIQ I  IP++L+ +Y+TVWE+PQK+++D+AA RGA+IDQSQSL
Sbjct: 677 GLWTSEIRDAIKLAEGSIQGIAAIPERLRQIYRTVWELPQKSLIDLAAARGAWIDQSQSL 736

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  ++SSM+ + WK G+KT  YYLR++PA          TK+A    S     
Sbjct: 737 NLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA----------TKIAKTTVSA---- 781

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                +DQ QA AA+ C  +N E C   Q
Sbjct: 782 ----ASDQAQANAAVFCSLENPEYCEACQ 806



 Score =  199 bits (507), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 143/229 (62%), Gaps = 20/229 (8%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W    P D   W AL+E+I +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 593 LQFDHWPSAIPHDGARWNALRERIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 652

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F  VN +L  +L  LGLW   ++D + +  GSIQ I  IP++L+ +Y+TVW
Sbjct: 653 FKRETLSGDFLQVNRYLADELKTLGLWTSEIRDAIKLAEGSIQGIAAIPERLRQIYRTVW 712

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK+++D+AA RGA+IDQSQSLN++M   N  ++SSM+ + WK G+KT  YYLR++PA
Sbjct: 713 ELPQKSLIDLAAARGAWIDQSQSLNLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA 771

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                     TK+A    S          +DQ QA AA+ C  +N E C
Sbjct: 772 ----------TKIAKTTVSA--------ASDQAQANAAVFCSLENPEYC 802



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVE+D +WSL  
Sbjct: 319 RKGAACVYLESWHADIKDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVENDGEWSLFD 378

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P       DSWGE FD  Y+K EA+GL 
Sbjct: 379 PKVVPHFVDSWGEAFDAAYRKAEADGLA 406



 Score = 73.2 bits (178), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+  L+ +I E IY+ AL  SCE+A  +G +  +  S  +
Sbjct: 530 LGVMGLQDVFFKLRLPFDSAEALALSTRIAEEIYFNALSQSCELAEAEGAHPGFAESRAA 589

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W    P D   W AL+     +GL+
Sbjct: 590 NGELQFDHWPSAIPHDGARWNALRERIKQHGLR 622


>gi|108757444|ref|YP_633212.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
           xanthus DK 1622]
 gi|108461324|gb|ABF86509.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
           xanthus DK 1622]
          Length = 785

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/508 (43%), Positives = 332/508 (65%), Gaps = 11/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 287 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P +    +D +G+ F+  Y K EA+G  +R+V AR L+  ++ S  +TG  +M +KD  N
Sbjct: 347 PKSVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLYARMMKSLAQTGNGWMTFKDISN 406

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ       I  SNLCTEI+E TS+ E AVCNL S+ L+  +   D  ++F +L+  
Sbjct: 407 RKSNQTGKAGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRML--VDGKFDFERLRAN 464

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A++  + L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F Q++L FD  E+R L+K
Sbjct: 465 AQLAMRQLDRVIDLNYYPIPTAASSNKRWRPVGLGLMGLQDVFFQLKLAFDSAEARALSK 524

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SCE+A + G ++++  +  ++G LQ+D WGV P D   W AL+++I 
Sbjct: 525 KISEEIYFAALTTSCELAEQYGAHESFAETRAAKGELQFDHWGVVPEDTARWDALRQRIM 584

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++ R  LSG+F  VN +L+RDL  LG
Sbjct: 585 KHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLVRDLQALG 644

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++N+++++ +  GS+QDI  +P+ L+ +Y+T WE+P +++LDM ADRGAFIDQSQSLN
Sbjct: 645 LWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWELPMRSLLDMGADRGAFIDQSQSLN 704

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   N  K+SSM+F+ W+ GLKT  YYLR++PA    + T+     A+   +  A   
Sbjct: 705 LFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPATRIAKATVGAGGGASVAQAAPAPVA 763

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +  +A+      A+ C  +N E C   Q
Sbjct: 764 KATEAE------AVACSLENPEACEACQ 785



 Score =  213 bits (543), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 150/228 (65%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WGV P D   W AL+++I KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++
Sbjct: 561 LQFDHWGVVPEDTARWDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLF 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+RDL  LGLW++N+++++ +  GS+QDI  +P+ L+ +Y+T WE
Sbjct: 621 KRETLSGDFLQVNRYLVRDLQALGLWNENIRNRIKMAEGSVQDITELPENLRAVYRTAWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P +++LDM ADRGAFIDQSQSLN+++   N  K+SSM+F+ W+ GLKT  YYLR++PA 
Sbjct: 681 LPMRSLLDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPAT 739

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+     A+   +      +  +A+      A+ C  +N E C
Sbjct: 740 RIAKATVGAGGGASVAQAAPAPVAKATEAE------AVACSLENPEAC 781



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 60/98 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 287 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 346

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P +    +D +G+ F+  Y K EA+GL   +  A  +Y
Sbjct: 347 PKSVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLY 384



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 61/92 (66%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q++L FD  E+R L+K+I E IY+ AL  SCE+A + G ++++  +  +
Sbjct: 498 LGLMGLQDVFFQLKLAFDSAEARALSKKISEEIYFAALTTSCELAEQYGAHESFAETRAA 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D WGV P D   W AL+   + +GL+
Sbjct: 558 KGELQFDHWGVVPEDTARWDALRQRIMKHGLR 589


>gi|194363984|ref|YP_002026594.1| ribonucleoside-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia R551-3]
 gi|194346788|gb|ACF49911.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia R551-3]
          Length = 803

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/508 (45%), Positives = 320/508 (62%), Gaps = 17/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ DFLEL+ NTG E  RA +L    WIPD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYSRMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS +E AVCNL SI L  + +  +  ++F KL D 
Sbjct: 431 RASNQTLRAGNVIHLSNLCTEILEVTSAEETAVCNLGSINLGNHFD-GNGEFDFDKLADT 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR  N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIESARRGNLRWRPVGLGCMGLQDVFFRKRLPFDGAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I ETIY+ ALE S E+A   G + ++  +  + G LQ+D W V P D   W +L+E+I 
Sbjct: 550 KIAETIYFHALETSVELAQERGKHPSFADTRAASGELQFDAWNVVPEDAERWDSLRERIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
            W   M+D + +  GSIQ I  IP+ L+ +Y+T WE+P ++++DMAADRGAFIDQS SLN
Sbjct: 670 HWTPEMRDAIKLAEGSIQGITQIPETLRHVYRTAWELPMRSLIDMAADRGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA          TK+A    S  A + 
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPA----------TKIAKTTVSHAAGAA 778

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            E     E+A+A   C  +N E C   Q
Sbjct: 779 PEKVFSPEEAIA---CSLENPEACEACQ 803



 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/228 (43%), Positives = 140/228 (61%), Gaps = 14/228 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W +L+E+I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDAERWDSLRERIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LG W   M+D + +  GSIQ I  IP+ L+ +Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGHWTPEMRDAIKLAEGSIQGITQIPETLRHVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADRGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAADRGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPA- 763

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                    TK+A    S    +  E     E+A+A   C  +N E C
Sbjct: 764 ---------TKIAKTTVSHAAGAAPEKVFSPEEAIA---CSLENPEAC 799



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ DFLEL+ NTG E  RA +L    WIPD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADVEDFLELRDNTGDESRRAHNLNLANWIPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQG 396



 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I ETIY+ ALE S E+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDGAEARALSKKIAETIYFHALETSVELAQERGKHPSFADTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W +L+     +GL+
Sbjct: 583 SGELQFDAWNVVPEDAERWDSLRERIKEHGLR 614


>gi|347756559|ref|YP_004864122.1| ribonucleoside-diphosphate reductase subunit alpha [Candidatus
           Chloracidobacterium thermophilum B]
 gi|347589076|gb|AEP13605.1| ribonucleoside-diphosphate reductase, alpha subunit [Candidatus
           Chloracidobacterium thermophilum B]
          Length = 800

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/508 (45%), Positives = 319/508 (62%), Gaps = 11/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI DFLEL+ NTG E  R  +L    WIPD FM+RVE D  WSL  
Sbjct: 302 RKGACCVYLEPWHADIEDFLELRDNTGDEARRTYNLNLANWIPDLFMKRVEEDGPWSLFD 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +GE+F+  Y K E+E  + RQ+ AR L+  ++ +  +TG  +M +KDA N
Sbjct: 362 PKLVPHLPDLYGEEFEAAYLKAESEKLYTRQIRARDLYQRMMRTLAQTGNGWMTFKDAAN 421

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RK NQ  Q    +  SNLCTEI+E TS  E AVCNL S+ L  ++   D  ++F KL   
Sbjct: 422 RKCNQTAQPGRVVHLSNLCTEIIEVTSPTETAVCNLGSLNLARHVT--DGRFDFEKLARN 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I  + L+++ID+NFYP+     SN R RPIG+G+ GL D+F Q+RLPFD  E+  L+ 
Sbjct: 480 VRIAVRQLDRVIDINFYPIPSTAASNRRWRPIGLGLMGLQDVFFQLRLPFDSPEALELST 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E +YY AL ASC++A   GP+  +  +  +QGILQ+D+WGVTP D   W AL+E+I 
Sbjct: 540 RIQEEVYYHALAASCDLAEVHGPHPAFPETRAAQGILQFDLWGVTPPDPERWKALRERIR 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLLIA  PTA+ A I G  E+ EP  SN++ R  LSG+F  +N +L+ DL  LG
Sbjct: 600 ATGLRNSLLIAIAPTATIASICGCYEAIEPQVSNLFKRETLSGDFLQINRYLVEDLKRLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+++++ Q+ + +GSIQ I  IP+ L+ LY+T WE+P + ++DMAA RGA+IDQSQSLN
Sbjct: 660 LWNEDIRTQIKLADGSIQGIAAIPEDLRRLYRTAWELPMRALIDMAAARGAYIDQSQSLN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   +  K+SSM+ + WK GLKT  YYLR++PA    + T+  T  A         + 
Sbjct: 720 LFMESPSIGKLSSMYMYAWKKGLKT-TYYLRSRPATTIAKATVAPT--AAGTGGNGPGAP 776

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +   +D     AA+ C   N E C   Q
Sbjct: 777 QPTPSDD----AALACSLANPESCEACQ 800



 Score =  206 bits (524), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/228 (44%), Positives = 145/228 (63%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGVTP D   W AL+E+I   G+RNSLLIA  PTA+ A I G  E+ EP  SN++
Sbjct: 576 LQFDLWGVTPPDPERWKALRERIRATGLRNSLLIAIAPTATIASICGCYEAIEPQVSNLF 635

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  +N +L+ DL  LGLW+++++ Q+ + +GSIQ I  IP+ L+ LY+T WE
Sbjct: 636 KRETLSGDFLQINRYLVEDLKRLGLWNEDIRTQIKLADGSIQGIAAIPEDLRRLYRTAWE 695

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P + ++DMAA RGA+IDQSQSLN++M   +  K+SSM+ + WK GLKT  YYLR++PA 
Sbjct: 696 LPMRALIDMAAARGAYIDQSQSLNLFMESPSIGKLSSMYMYAWKKGLKT-TYYLRSRPAT 754

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+  T  A         + +   +D     AA+ C   N E C
Sbjct: 755 TIAKATVAPT--AAGTGGNGPGAPQPTPSDD----AALACSLANPESC 796



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 54/87 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI DFLEL+ NTG E  R  +L    WIPD FM+RVE D  WSL  
Sbjct: 302 RKGACCVYLEPWHADIEDFLELRDNTGDEARRTYNLNLANWIPDLFMKRVEEDGPWSLFD 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P     L D +GE+F+  Y K E+E L
Sbjct: 362 PKLVPHLPDLYGEEFEAAYLKAESEKL 388



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 60/92 (65%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q+RLPFD  E+  L+ +I E +YY AL ASC++A   GP+  +  +  +
Sbjct: 513 LGLMGLQDVFFQLRLPFDSPEALELSTRIQEEVYYHALAASCDLAEVHGPHPAFPETRAA 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGILQ+D+WGVTP D   W AL+      GL+
Sbjct: 573 QGILQFDLWGVTPPDPERWKALRERIRATGLR 604


>gi|426403938|ref|YP_007022909.1| ribonucleoside-diphosphate reductase subunit alpha [Bdellovibrio
           bacteriovorus str. Tiberius]
 gi|425860606|gb|AFY01642.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus str. Tiberius]
          Length = 821

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/512 (44%), Positives = 331/512 (64%), Gaps = 10/512 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WHGDI +FLEL+ NTG E  RA +L    W+PD FM+RVE+DA WSL  
Sbjct: 314 RKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFD 373

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       D++GE+F+  Y + E +  +I+Q+ AR L+  ++ +  +TG  +M +KD  N
Sbjct: 374 PKVVPHFVDTYGEEFEKAYTEAEEKKLYIKQLKARDLYSRMMKTLAQTGNGWMTFKDHAN 433

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            K+NQ       I  SNLCTEI+E TS  E AVCNL S+ L+ ++   +  +NF KL   
Sbjct: 434 LKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLSRHVE--NGQFNFEKLARS 491

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   K L++++D+NFYP+  A++SN + RP+G+GV GL D    M+LPFD   +R L+ 
Sbjct: 492 VRTAVKYLDRVVDINFYPIGTAQDSNHKWRPVGLGVMGLQDALFLMKLPFDSAAARDLSA 551

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E IYY AL  SCE+A + GP+  YE +  ++G+LQYD+WGVTP+    +  LKEKI 
Sbjct: 552 RVQEEIYYNALVTSCELAEKHGPHGAYEQTKAAKGLLQYDLWGVTPSQPERFEKLKEKIK 611

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I+G  E+ EP  SN++ R  LSGEF  +N +L+ DL  +G
Sbjct: 612 KHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETLSGEFMQINKYLVGDLKAMG 671

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W +++++++ + +GSIQD+  IP ++K+LY+TVWEIP K+++DMAADRGA+IDQ+QSLN
Sbjct: 672 IWTEDVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKSLVDMAADRGAYIDQAQSLN 731

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-KTKMANAMASK---D 564
           ++       K+SSM+ + WK G+KT  YYLR++PA    + T+   +  AN  AS+   D
Sbjct: 732 LFQESPTIGKLSSMYMYAWKKGVKT-TYYLRSRPATKIAKTTVKASSNSANPTASESMMD 790

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           A   +E +     A   + C  +N E C   Q
Sbjct: 791 AAPAQEAKKSYSDA-EVIACSLENPEACEACQ 821



 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 154/232 (66%), Gaps = 6/232 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTP+    +  LKEKI KHG+RNSL+IA  PTA+ A I+G  E+ EP  SN++
Sbjct: 588 LQYDLWGVTPSQPERFEKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLF 647

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  +N +L+ DL  +G+W +++++++ + +GSIQD+  IP ++K+LY+TVWE
Sbjct: 648 KRETLSGEFMQINKYLVGDLKAMGIWTEDVRNEIKLQDGSIQDVAMIPPQIKELYRTVWE 707

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IP K+++DMAADRGA+IDQ+QSLN++       K+SSM+ + WK G+KT  YYLR++PA 
Sbjct: 708 IPMKSLVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKT-TYYLRSRPAT 766

Query: 949 NAIQFTID-KTKMANAMASK---DTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+   +  AN  AS+   D    +E +     A   + C  +N E C
Sbjct: 767 KIAKTTVKASSNSANPTASESMMDAAPAQEAKKSYSDA-EVIACSLENPEAC 817



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 56/87 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WHGDI +FLEL+ NTG E  RA +L    W+PD FM+RVE+DA WSL  
Sbjct: 314 RKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFD 373

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P       D++GE+F+  Y + E + L
Sbjct: 374 PKVVPHFVDTYGEEFEKAYTEAEEKKL 400



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 58/92 (63%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D    M+LPFD   +R L+ ++ E IYY AL  SCE+A + GP+  YE +  +
Sbjct: 525 LGVMGLQDALFLMKLPFDSAAARDLSARVQEEIYYNALVTSCELAEKHGPHGAYEQTKAA 584

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYD+WGVTP+    +  LK     +GL+
Sbjct: 585 KGLLQYDLWGVTPSQPERFEKLKEKIKKHGLR 616


>gi|389794220|ref|ZP_10197378.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           fulvus Jip2]
 gi|388432745|gb|EIL89734.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           fulvus Jip2]
          Length = 816

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 230/509 (45%), Positives = 318/509 (62%), Gaps = 24/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVESD  WSL  
Sbjct: 329 RKGAACVYLETWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVESDGDWSLFD 388

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       DSWGE FD  Y+K EA+G  ++ V AR+L+  ++ +  +TG  +M +KD CN
Sbjct: 389 PKVVPHFVDSWGETFDAAYRKAEADGLGVKTVKARELYARMMRTLAQTGNGWMTFKDRCN 448

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ       I  SNLCTEI+E +S +E AVCNL S+ L+ ++   D  +N+ +L   
Sbjct: 449 ATSNQTAKLENVIHLSNLCTEILEVSSVNETAVCNLGSVNLSRHV--VDGVFNYDQLAAT 506

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + LN++ID+N+YP+  AR +NM+ RP+G+GV GL D+F ++RLPFD  E+  L+ 
Sbjct: 507 VRTAVRQLNRVIDLNYYPIPTARTANMKWRPVGLGVMGLQDVFFKLRLPFDSTEALALST 566

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E IY+ AL  SCE+A  +G +  +  S  +   LQ+D W   TP +   W AL+EKI
Sbjct: 567 RIAEEIYFNALSQSCELAEGEGMHPGFAESRAANAELQFDYWPNTTPHNTARWDALREKI 626

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L  +L  L
Sbjct: 627 KQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLADELKAL 686

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW   ++D + +  GSIQ+I  IP++L+ +Y+TVWE+PQK ++++AA RGA+IDQSQSL
Sbjct: 687 GLWTSEIRDAIKLAEGSIQNINAIPERLRAIYRTVWELPQKALIELAAARGAYIDQSQSL 746

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  ++SSM+ + WK G+KT  YYLR++PA          TK+A    S     
Sbjct: 747 NLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA----------TKIAKTTVSA---- 791

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                 DQ QA AA+ C  +N E C   Q
Sbjct: 792 ----APDQAQATAAVFCSLENPEYCEACQ 816



 Score =  201 bits (511), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/229 (44%), Positives = 143/229 (62%), Gaps = 20/229 (8%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W   TP +   W AL+EKI +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 603 LQFDYWPNTTPHNTARWDALREKIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 662

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F  VN +L  +L  LGLW   ++D + +  GSIQ+I  IP++L+ +Y+TVW
Sbjct: 663 FKRETLSGDFLQVNRYLADELKALGLWTSEIRDAIKLAEGSIQNINAIPERLRAIYRTVW 722

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK ++++AA RGA+IDQSQSLN++M   N  ++SSM+ + WK G+KT  YYLR++PA
Sbjct: 723 ELPQKALIELAAARGAYIDQSQSLNLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA 781

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                     TK+A    S           DQ QA AA+ C  +N E C
Sbjct: 782 ----------TKIAKTTVSA--------APDQAQATAAVFCSLENPEYC 812



 Score =  109 bits (273), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 57/87 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG +  RA +L    WIPDEFMRRVESD  WSL  
Sbjct: 329 RKGAACVYLETWHADIEDFLELRDNTGDDARRAHNLNIANWIPDEFMRRVESDGDWSLFD 388

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P       DSWGE FD  Y+K EA+GL
Sbjct: 389 PKVVPHFVDSWGETFDAAYRKAEADGL 415



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+  L+ +I E IY+ AL  SCE+A  +G +  +  S  +
Sbjct: 540 LGVMGLQDVFFKLRLPFDSTEALALSTRIAEEIYFNALSQSCELAEGEGMHPGFAESRAA 599

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
              LQ+D W   TP +   W AL+     +GL+
Sbjct: 600 NAELQFDYWPNTTPHNTARWDALREKIKQHGLR 632


>gi|386716673|ref|YP_006182999.1| ribonucleotide reductase subunit alpha [Stenotrophomonas
           maltophilia D457]
 gi|384076235|emb|CCH10816.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Stenotrophomonas maltophilia D457]
          Length = 800

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/497 (45%), Positives = 318/497 (63%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEQAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+ +I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAAGGELQFDAWNVVPEDTARWDALRARIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW  +M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSAAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  196 bits (497), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+ +I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW  +M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTADMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSAAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEQAYLQAEAQG 396



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 GGELQFDAWNVVPEDTARWDALRARIKEHGLR 614


>gi|344205622|ref|YP_004790763.1| ribonucleoside-diphosphate reductase subunit alpha
           [Stenotrophomonas maltophilia JV3]
 gi|343776984|gb|AEM49537.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia JV3]
          Length = 800

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/497 (45%), Positives = 317/497 (63%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEQAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRAGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+ +I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAAGGELQFDAWNVVPEDTARWDALRARIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSAAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  195 bits (496), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+ +I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW   M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSAAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEQAYLQAEAQG 396



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 GGELQFDAWNVVPEDTARWDALRARIKEHGLR 614


>gi|424666639|ref|ZP_18103665.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia Ab55555]
 gi|401070085|gb|EJP78603.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Stenotrophomonas maltophilia Ab55555]
          Length = 800

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/497 (45%), Positives = 317/497 (63%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+ +I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTARWDALRARIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSAAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  195 bits (496), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+ +I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRARIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW   M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSAAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQG 396



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 SGELQFDAWNVVPEDTARWDALRARIKEHGLR 614


>gi|190572322|ref|YP_001970167.1| ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
 gi|190010244|emb|CAQ43852.1| putative ribonucleoside-diphosphate reductase large subunit
           [Stenotrophomonas maltophilia K279a]
          Length = 775

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/497 (45%), Positives = 317/497 (63%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 286 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 345

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 346 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 405

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 406 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 464

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + RLPFD  E+R L+K
Sbjct: 465 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRLPFDSAEARALSK 524

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+ +I 
Sbjct: 525 KIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTARWDALRSRIK 584

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 585 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 644

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 645 LWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 704

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 705 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSAAAPAKVFSPD 758

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 759 EAIACSLENPEACEACQ 775



 Score =  196 bits (497), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+ +I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 561 LQFDAWNVVPEDTARWDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW   M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 621 KRETLSGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 681 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 739

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 740 K-----IAKTTVSAAAPAKVFSPDEAIACSLENPEACEACQ 775



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 286 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 345

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 346 PRVVPEFTDLFGEAFEAAYLQAEAQG 371



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RLPFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 498 LGCMGLQDVFFRKRLPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 558 SGELQFDAWNVVPEDTARWDALRSRIKEHGLR 589


>gi|383454420|ref|YP_005368409.1| ribonucleoside-diphosphate reductase subunit alpha [Corallococcus
           coralloides DSM 2259]
 gi|380733635|gb|AFE09637.1| ribonucleoside-diphosphate reductase subunit alpha [Corallococcus
           coralloides DSM 2259]
          Length = 823

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/508 (45%), Positives = 328/508 (64%), Gaps = 11/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FMRRVE+D +WSL  
Sbjct: 325 RKGACCVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMRRVEADQEWSLFD 384

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T   L+D +G+ FD  Y   EA+G+ +R+V AR L+  ++    +TG  +M +KD  N
Sbjct: 385 PKTTPHLTDLFGDAFDKAYVAAEAQGQAVRKVKARDLYARMMKVLAQTGNGWMTFKDISN 444

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  Q    I  SNLCTEI+E TS+ E AVCNL S+ L   +   D  ++F  L+  
Sbjct: 445 RKSNQTGQPGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMVK--DGKFDFDLLRSN 502

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A +  K L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F Q+RLPFD  E+R L+K
Sbjct: 503 AMLALKQLDRVIDLNYYPIPTAADSNRRWRPVGLGLMGLQDVFFQLRLPFDSVEARNLSK 562

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IYY AL  S ++A + G + ++  +  ++G LQ+D WG+ P D   W AL+ +I 
Sbjct: 563 KISEEIYYAALVTSSDLAEQFGAHPSFPETRAAKGELQFDSWGIVPEDTLRWDALRSRIM 622

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+RDL +LG
Sbjct: 623 KVGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLVRDLQQLG 682

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++N ++++ +  GS+QD+  +P++L+ +Y+T WEIP +++LDM ADRGAFIDQSQSLN
Sbjct: 683 LWNENTRNRIKLAEGSVQDLTELPEELRAIYRTAWEIPMRSLLDMGADRGAFIDQSQSLN 742

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   N  K+SSM+F+ W+ GLKT  YYLR++PA    + T+ +       A   A   
Sbjct: 743 LFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPATRIAKATVGQGGPTITAAPTPA--P 799

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           + + A+ E    A+ C  +N E C   Q
Sbjct: 800 QTVTAEAE----AVACSLENPEACEACQ 823



 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 151/228 (66%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WG+ P D   W AL+ +I K G+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 599 LQFDSWGIVPEDTLRWDALRSRIMKVGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLF 658

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+RDL +LGLW++N ++++ +  GS+QD+  +P++L+ +Y+T WE
Sbjct: 659 KRETLSGDFLQVNRYLVRDLQQLGLWNENTRNRIKLAEGSVQDLTELPEELRAIYRTAWE 718

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IP +++LDM ADRGAFIDQSQSLN+++   N  K+SSM+F+ W+ GLKT  YYLR++PA 
Sbjct: 719 IPMRSLLDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPAT 777

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+ +      + +  T + + + A+ E    A+ C  +N E C
Sbjct: 778 RIAKATVGQG--GPTITAAPTPAPQTVTAEAE----AVACSLENPEAC 819



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FMRRVE+D +WSL  
Sbjct: 325 RKGACCVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMRRVEADQEWSLFD 384

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L+D +G+ FD  Y   EA+G
Sbjct: 385 PKTTPHLTDLFGDAFDKAYVAAEAQG 410



 Score = 83.2 bits (204), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 59/92 (64%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q+RLPFD  E+R L+K+I E IYY AL  S ++A + G + ++  +  +
Sbjct: 536 LGLMGLQDVFFQLRLPFDSVEARNLSKKISEEIYYAALVTSSDLAEQFGAHPSFPETRAA 595

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D WG+ P D   W AL+   +  GL+
Sbjct: 596 KGELQFDSWGIVPEDTLRWDALRSRIMKVGLR 627


>gi|310823069|ref|YP_003955427.1| ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396141|gb|ADO73600.1| Ribonucleoside-diphosphate reductase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 841

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/471 (46%), Positives = 316/471 (67%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  R  +L    W+ D FMRRVE+D +WSL  
Sbjct: 328 RKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFD 387

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T   L+D +GE F+  Y   EA+G   R+V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 388 PKTVPHLTDLYGEAFERAYAAAEAQGLAARKVKARDLYARMMKTLAQTGNGWMTFKDISN 447

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  ++   I  SNLCTEI+E T+  E AVCNL S+ L   +  +D  ++F +L+  
Sbjct: 448 RKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRML--SDGKFDFERLRVN 505

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+N+YP+  A  SN R RP+G+G+ GL D+F Q+R+PFD  E+R L+K
Sbjct: 506 VQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDAPEARALSK 565

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SC++A + GP+Q +  +  + G LQ+D WGV P D   WAAL+E+I 
Sbjct: 566 KISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTARWAALRERIQ 625

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+R+L  LG
Sbjct: 626 KFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNKYLVRELQALG 685

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D M+ +L ++ GS+QD+  +P +LK +Y+T WE+P ++++DMAADRGAFIDQSQSLN
Sbjct: 686 LWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSLIDMAADRGAFIDQSQSLN 745

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +++   N  KMSSM+F+ W+ GLKT  YY+R++PA    + T+D +   NA
Sbjct: 746 LFVEAPNIGKMSSMYFYAWQKGLKT-TYYMRSRPATRITKTTVDTSHGQNA 795



 Score =  216 bits (549), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 139/195 (71%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WGV P D   WAAL+E+I K G+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 602 LQFDAWGVVPEDTARWAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLF 661

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+R+L  LGLW+D M+ +L ++ GS+QD+  +P +LK +Y+T WE
Sbjct: 662 KRETLSGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWE 721

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADRGAFIDQSQSLN+++   N  KMSSM+F+ W+ GLKT  YY+R++PA 
Sbjct: 722 VPMRSLIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKT-TYYMRSRPAT 780

Query: 949 NAIQFTIDKTKMANA 963
              + T+D +   NA
Sbjct: 781 RITKTTVDTSHGQNA 795



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 61/92 (66%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q+R+PFD  E+R L+K+I E IY+ AL  SC++A + GP+Q +  +  +
Sbjct: 539 LGLMGLQDVFFQLRMPFDAPEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAA 598

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D WGV P D   WAAL+     +GL+
Sbjct: 599 HGELQFDAWGVVPEDTARWAALRERIQKFGLR 630



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 49/79 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  R  +L    W+ D FMRRVE+D +WSL  
Sbjct: 328 RKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFD 387

Query: 61  PNACRGLSDSWGEKFDDLY 79
           P     L+D +GE F+  Y
Sbjct: 388 PKTVPHLTDLYGEAFERAY 406


>gi|115378662|ref|ZP_01465812.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364328|gb|EAU63413.1| ribonucleoside-diphosphate reductase, alpha subunit [Stigmatella
           aurantiaca DW4/3-1]
          Length = 800

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/471 (46%), Positives = 316/471 (67%), Gaps = 5/471 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  R  +L    W+ D FMRRVE+D +WSL  
Sbjct: 287 RKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFD 346

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T   L+D +GE F+  Y   EA+G   R+V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 347 PKTVPHLTDLYGEAFERAYAAAEAQGLAARKVKARDLYARMMKTLAQTGNGWMTFKDISN 406

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  ++   I  SNLCTEI+E T+  E AVCNL S+ L   +  +D  ++F +L+  
Sbjct: 407 RKSNQTGKDGNVIHLSNLCTEILEVTNASETAVCNLGSLNLGRML--SDGKFDFERLRVN 464

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+N+YP+  A  SN R RP+G+G+ GL D+F Q+R+PFD  E+R L+K
Sbjct: 465 VQLAIRQLDRVIDLNYYPIPTAAASNSRWRPVGLGLMGLQDVFFQLRMPFDAPEARALSK 524

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SC++A + GP+Q +  +  + G LQ+D WGV P D   WAAL+E+I 
Sbjct: 525 KISEEIYFSALTTSCDLAEQHGPHQAFSETRAAHGELQFDAWGVVPEDTARWAALRERIQ 584

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+R+L  LG
Sbjct: 585 KFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNKYLVRELQALG 644

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW+D M+ +L ++ GS+QD+  +P +LK +Y+T WE+P ++++DMAADRGAFIDQSQSLN
Sbjct: 645 LWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWEVPMRSLIDMAADRGAFIDQSQSLN 704

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 559
           +++   N  KMSSM+F+ W+ GLKT  YY+R++PA    + T+D +   NA
Sbjct: 705 LFVEAPNIGKMSSMYFYAWQKGLKT-TYYMRSRPATRITKTTVDTSHGQNA 754



 Score =  215 bits (548), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 139/195 (71%), Gaps = 1/195 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WGV P D   WAAL+E+I K G+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 561 LQFDAWGVVPEDTARWAALRERIQKFGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLF 620

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+R+L  LGLW+D M+ +L ++ GS+QD+  +P +LK +Y+T WE
Sbjct: 621 KRETLSGDFLQVNKYLVRELQALGLWNDAMRSKLKMSEGSVQDLTELPAELKAIYRTAWE 680

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADRGAFIDQSQSLN+++   N  KMSSM+F+ W+ GLKT  YY+R++PA 
Sbjct: 681 VPMRSLIDMAADRGAFIDQSQSLNLFVEAPNIGKMSSMYFYAWQKGLKT-TYYMRSRPAT 739

Query: 949 NAIQFTIDKTKMANA 963
              + T+D +   NA
Sbjct: 740 RITKTTVDTSHGQNA 754



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 61/92 (66%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q+R+PFD  E+R L+K+I E IY+ AL  SC++A + GP+Q +  +  +
Sbjct: 498 LGLMGLQDVFFQLRMPFDAPEARALSKKISEEIYFSALTTSCDLAEQHGPHQAFSETRAA 557

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D WGV P D   WAAL+     +GL+
Sbjct: 558 HGELQFDAWGVVPEDTARWAALRERIQKFGLR 589



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 49/79 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  R  +L    W+ D FMRRVE+D +WSL  
Sbjct: 287 RKGACCVYLETWHADIEDFLELRDNTGDEARRTHNLNLANWVSDLFMRRVEADQEWSLFD 346

Query: 61  PNACRGLSDSWGEKFDDLY 79
           P     L+D +GE F+  Y
Sbjct: 347 PKTVPHLTDLYGEAFERAY 365


>gi|456737525|gb|EMF62220.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Stenotrophomonas maltophilia EPM1]
          Length = 800

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/497 (45%), Positives = 317/497 (63%), Gaps = 9/497 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +GE F+  Y + EA+GK  R + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQGKANRTISARKLYARMMRTLAETGNGWMTFKDKCN 430

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +  ++ ++F KL + 
Sbjct: 431 RASNQTLRPGNVIHLSNLCTEILEVTSNDETAVCNLGSINLGNHFDEHNE-FDFEKLAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++  + L+++ID+NFYP+E AR +N+R RP+G+G  GL D+F + R+PFD  E+R L+K
Sbjct: 490 VRLAVRQLDRVIDLNFYPIETARRANLRWRPVGLGCMGLQDVFFRKRMPFDSAEARALSK 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ ALE SCE+A   G + ++  +  + G LQ+D W V P D   W AL+ +I 
Sbjct: 550 KIAEAIYFHALETSCELAQERGKHPSFNDTRAASGELQFDAWNVVPEDTARWDALRSRIK 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 610 EHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLFKRETLSGDFLQVNRYLVNELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   M+D + +  GSI  +  IP+ L+++Y+T WE+P ++++DMAA+RGAFIDQS SLN
Sbjct: 670 LWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWELPMRSLIDMAAERGAFIDQSASLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   MSSM+ + WK G+KT  YYLR++PA       I KT ++ A  +K     
Sbjct: 730 LFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPATK-----IAKTTVSAAAPAKVFSPD 783

Query: 569 EEIQADQEQAMAAMICR 585
           E I    E   A   C+
Sbjct: 784 EAIACSLENPEACEACQ 800



 Score =  196 bits (497), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D W V P D   W AL+ +I +HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 586 LQFDAWNVVPEDTARWDALRSRIKEHGLRNSLMIAIAPTATIASIAGCYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L +LGLW   M+D + +  GSI  +  IP+ L+++Y+T WE
Sbjct: 646 KRETLSGDFLQVNRYLVNELKKLGLWTPEMRDAIKLAEGSIAGVAQIPETLREVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA+RGAFIDQS SLN++M   N   MSSM+ + WK G+KT  YYLR++PA 
Sbjct: 706 LPMRSLIDMAAERGAFIDQSASLNLFMESPNIGAMSSMYMYAWKQGIKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
                 I KT ++ A  +K     E I    E   A   C+
Sbjct: 765 K-----IAKTTVSAAAPAKVFSPDEAIACSLENPEACEACQ 800



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL+ NTG E  RA +L    W+PD FM+RVE+D +WSL  
Sbjct: 311 RKGAACVYLETWHADIEDFLELRDNTGDEARRAHNLNLANWVPDLFMKRVEADQEWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P      +D +GE F+  Y + EA+G
Sbjct: 371 PRVVPEFTDLFGEAFEAAYLQAEAQG 396



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + R+PFD  E+R L+K+I E IY+ ALE SCE+A   G + ++  +  +
Sbjct: 523 LGCMGLQDVFFRKRMPFDSAEARALSKKIAEAIYFHALETSCELAQERGKHPSFNDTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W V P D   W AL+     +GL+
Sbjct: 583 SGELQFDAWNVVPEDTARWDALRSRIKEHGLR 614


>gi|338536258|ref|YP_004669592.1| ribonucleoside-diphosphate reductase subunit alpha [Myxococcus
           fulvus HW-1]
 gi|337262354|gb|AEI68514.1| ribonucleoside-diphosphate reductase, alpha subunit [Myxococcus
           fulvus HW-1]
          Length = 838

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/508 (43%), Positives = 331/508 (65%), Gaps = 11/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 340 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 399

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P      +D +G+ F+  Y K EA+G  +R+V AR L+  ++ S  +TG  +M +KD  N
Sbjct: 400 PKAVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLYARMMKSLAQTGNGWMTFKDISN 459

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  ++   I  SNLCTEI+E TS+ E AVCNL S+ L+  +   D  ++F +L+  
Sbjct: 460 RKSNQTGKDGNVIHLSNLCTEILEVTSQGETAVCNLGSLNLSRML--VDGKFDFERLRAN 517

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A++  + L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F Q++L FD  E+R L+K
Sbjct: 518 AQLAMRQLDRVIDLNYYPIPAAASSNKRWRPVGLGLMGLQDVFFQLKLAFDSAEARALSK 577

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SCE+A + G + ++  +  ++G LQ+D WGV P D   W AL+++I 
Sbjct: 578 KISEEIYFAALTTSCELAEQYGAHASFPETRAARGELQFDHWGVVPEDTARWDALRQRIM 637

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++ R  LSG+F  VN +L+RDL  LG
Sbjct: 638 KHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLFKRETLSGDFLQVNRYLVRDLQALG 697

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++N ++++ +  GS+QD+  +P+ L+ +Y+T WE+P +++LDM ADRGAFIDQSQSLN
Sbjct: 698 LWNENTRNRIKMAEGSVQDLTELPEHLRAVYRTAWELPMRSLLDMGADRGAFIDQSQSLN 757

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   N  K+SSM+F+ W+ GLKT  YYLR++PA    + T+     A+   +  A   
Sbjct: 758 LFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPATRIAKATVGAGGGASVAQAAPAPVA 816

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +  +A+      A+ C  +N E C   Q
Sbjct: 817 KATEAE------AVACSLENPEACEACQ 838



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 149/228 (65%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WGV P D   W AL+++I KHG+RNSL+IA  PTA+ A I+G  E  EP  SN++
Sbjct: 614 LQFDHWGVVPEDTARWDALRQRIMKHGLRNSLMIAIAPTATIASIVGCYECIEPQVSNLF 673

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+RDL  LGLW++N ++++ +  GS+QD+  +P+ L+ +Y+T WE
Sbjct: 674 KRETLSGDFLQVNRYLVRDLQALGLWNENTRNRIKMAEGSVQDLTELPEHLRAVYRTAWE 733

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P +++LDM ADRGAFIDQSQSLN+++   N  K+SSM+F+ W+ GLKT  YYLR++PA 
Sbjct: 734 LPMRSLLDMGADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPAT 792

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+     A+   +      +  +A+      A+ C  +N E C
Sbjct: 793 RIAKATVGAGGGASVAQAAPAPVAKATEAE------AVACSLENPEAC 834



 Score = 96.3 bits (238), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 60/98 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL++NTG +  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 340 RKGACCVYLETWHADIEDFLELRENTGDDARRTHNLNLANWVPDLFMKRVEADGDWSLFD 399

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P A    +D +G+ F+  Y K EA+GL   +  A  +Y
Sbjct: 400 PKAVPHFTDLYGDAFEQAYAKAEADGLAMRKVKARDLY 437



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 60/92 (65%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q++L FD  E+R L+K+I E IY+ AL  SCE+A + G + ++  +  +
Sbjct: 551 LGLMGLQDVFFQLKLAFDSAEARALSKKISEEIYFAALTTSCELAEQYGAHASFPETRAA 610

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D WGV P D   W AL+   + +GL+
Sbjct: 611 RGELQFDHWGVVPEDTARWDALRQRIMKHGLR 642


>gi|225873705|ref|YP_002755164.1| ribonucleoside-diphosphate reductase subunit alpha [Acidobacterium
           capsulatum ATCC 51196]
 gi|225791715|gb|ACO31805.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 792

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/508 (44%), Positives = 317/508 (62%), Gaps = 26/508 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH D+  FLEL++NTG    R  +L    WIPD FMRRVE D  WSL  
Sbjct: 309 RKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVEEDGMWSLFD 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +G +FD  Y+K EAE  + RQ+ AR L+  ++ S  ETG  +M +KDACN
Sbjct: 369 PKVVPQLPDLYGVEFDAAYEKAEAEQLYARQIKARDLYARMMRSLAETGNGWMTFKDACN 428

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            K NQ       +  SNLCTEI E TS+DE AVCNL SI L  ++  A+  ++F KL + 
Sbjct: 429 LKCNQTGKPGNVVHLSNLCTEITEVTSRDETAVCNLGSINLARHV--ANGAFDFEKLAET 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++    L+++ID+N+YPV +A ++N R RP+G+G+ GL D+F Q+R+PFD  E++ L+ 
Sbjct: 487 VRVAVPMLDRVIDINYYPVHQAASANSRWRPVGLGLMGLQDVFFQLRMPFDSPEAQQLST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
            I E IYY AL ASCE+A + G +  +  + ++ G LQ+D+WGV P D   W  L+ +I 
Sbjct: 547 HIQEEIYYHALAASCELAEKQGAHPAFAETRLAAGQLQFDLWGVKPADEARWNTLRARIQ 606

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HGVRNSLLIA  PTA+ A I+G  E  EP  SN++ R  LSGEF  VN +L+ DL E G
Sbjct: 607 QHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLFKRETLSGEFLQVNRYLVTDLKERG 666

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW++ ++ +L +  GS+Q I+GIP  LK +Y+TVWE+P + ++D+A +R  FIDQSQSLN
Sbjct: 667 LWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWELPMRAIIDLARERSPFIDQSQSLN 726

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++    N  ++SSM+ + WK GLKT  YYLR++PA       I KT +A+A         
Sbjct: 727 LFAESPNIGRLSSMYMYAWKSGLKT-TYYLRSRPATR-----IAKTTVASA--------- 771

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                  + A AA+ C  +N   C   Q
Sbjct: 772 -------KNATAAVACSLENPGSCEACQ 792



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 132/198 (66%), Gaps = 1/198 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV P D   W  L+ +I +HGVRNSLLIA  PTA+ A I+G  E  EP  SN++
Sbjct: 583 LQFDLWGVKPADEARWNTLRARIQQHGVRNSLLIAIAPTATIASIVGCYECTEPQVSNLF 642

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+ DL E GLW++ ++ +L +  GS+Q I+GIP  LK +Y+TVWE
Sbjct: 643 KRETLSGEFLQVNRYLVTDLKERGLWNEELRMRLKLGEGSVQAIDGIPDDLKQIYRTVWE 702

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P + ++D+A +R  FIDQSQSLN++    N  ++SSM+ + WK GLKT  YYLR++PA 
Sbjct: 703 LPMRAIIDLARERSPFIDQSQSLNLFAESPNIGRLSSMYMYAWKSGLKT-TYYLRSRPAT 761

Query: 949 NAIQFTIDKTKMANAMAS 966
              + T+   K A A  +
Sbjct: 762 RIAKTTVASAKNATAAVA 779



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 53/87 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH D+  FLEL++NTG    R  +L    WIPD FMRRVE D  WSL  
Sbjct: 309 RKGACCVYLEPWHADVEQFLELRENTGDLSRRTYNLNLANWIPDLFMRRVEEDGMWSLFD 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P     L D +G +FD  Y+K EAE L
Sbjct: 369 PKVVPQLPDLYGVEFDAAYEKAEAEQL 395



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 58/92 (63%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q+R+PFD  E++ L+  I E IYY AL ASCE+A + G +  +  + ++
Sbjct: 520 LGLMGLQDVFFQLRMPFDSPEAQQLSTHIQEEIYYHALAASCELAEKQGAHPAFAETRLA 579

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D+WGV P D   W  L+     +G++
Sbjct: 580 AGQLQFDLWGVKPADEARWNTLRARIQQHGVR 611


>gi|392558225|gb|EIW51419.1| alpha subunit of ribonucleoside diphosphate reductase [Trametes
           versicolor FP-101664 SS1]
          Length = 838

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 210/458 (45%), Positives = 305/458 (66%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RP A    +  WH D+   + +++     +   RD++  LWI D FMRRV+ +  WSL  
Sbjct: 291 RPSAATAVIPIWHADVTKVINIRRGNVLGQAPLRDIYPALWIADLFMRRVQENVYWSLFD 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L++ +G  F+  Y + E        V AR L++ I+  QI +GTPY++Y DA N
Sbjct: 351 PADAPQLAELYGAAFEAEYTQLEQSNIQRVTVLARSLFYQIVVMQIRSGTPYIMYADAIN 410

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            K+NQ +LGTI+ +NLCTEIV+++S+    VC L+S++L  +++  D T++F  L    K
Sbjct: 411 AKNNQSHLGTIRATNLCTEIVQFSSRTRTPVCALSSLSLPAFVSSDDHTFDFDALHHATK 470

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           + T+  ++++D+N YP  EAR S +  R IG+GVQGLAD+F  M +P+  +E+R LN  I
Sbjct: 471 VATRCTDRVLDINDYPSPEARASAVETRAIGVGVQGLADVFRMMGIPYGSDEARRLNVSI 530

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
           FETIY+GALE S E+A R GP+  +  SP SQG+LQ DMW  TP+D +D+ AL+ +IAKH
Sbjct: 531 FETIYHGALEESSEMAERFGPFPAWNRSPASQGVLQCDMWNCTPSDRYDFDALRARIAKH 590

Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
           G+RNS+L A MPT+ST+Q+LGNN+S EPY SNIY+RR L GE+ ++  HL+++L   GLW
Sbjct: 591 GLRNSMLTAVMPTSSTSQLLGNNDSVEPYVSNIYTRRALGGEYHIICPHLVQELERRGLW 650

Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
             +M+ Q+I   GS+Q+I  IP +LK +Y+T WE+PQ+  + MAADRG +IDQSQS+++Y
Sbjct: 651 TPHMRRQIIDARGSVQNITTIPDRLKAVYRTAWEMPQRYTVIMAADRGPYIDQSQSMSLY 710

Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
           M     A + + H + W+ GLKTGMYYLRT     A+Q
Sbjct: 711 MRNPTAAALYTAHMYSWQAGLKTGMYYLRTTAPTYAMQ 748



 Score =  216 bits (550), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 134/184 (72%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + DMW  TP+D +D+ AL+ +IAKHG+RNS+L A MPT+ST+Q+LGNN+S EPY SNIY
Sbjct: 565 LQCDMWNCTPSDRYDFDALRARIAKHGLRNSMLTAVMPTSSTSQLLGNNDSVEPYVSNIY 624

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           +RR L GE+ ++  HL+++L   GLW  +M+ Q+I   GS+Q+I  IP +LK +Y+T WE
Sbjct: 625 TRRALGGEYHIICPHLVQELERRGLWTPHMRRQIIDARGSVQNITTIPDRLKAVYRTAWE 684

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQ+  + MAADRG +IDQSQS+++YM     A + + H + W+ GLKTGMYYLRT    
Sbjct: 685 MPQRYTVIMAADRGPYIDQSQSMSLYMRNPTAAALYTAHMYSWQAGLKTGMYYLRTTAPT 744

Query: 949 NAIQ 952
            A+Q
Sbjct: 745 YAMQ 748



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 65/92 (70%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGLAD+F  M +P+  +E+R LN  IFETIY+GALE S E+A R GP+  +  SP S
Sbjct: 502 VGVQGLADVFRMMGIPYGSDEARRLNVSIFETIYHGALEESSEMAERFGPFPAWNRSPAS 561

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+LQ DMW  TP+D +D+ AL+     +GL+
Sbjct: 562 QGVLQCDMWNCTPSDRYDFDALRARIAKHGLR 593



 Score = 58.5 bits (140), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RP A    +  WH D+   + +++     +   RD++  LWI D FMRRV+ +  WSL  
Sbjct: 291 RPSAATAVIPIWHADVTKVINIRRGNVLGQAPLRDIYPALWIADLFMRRVQENVYWSLFD 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P     L++ +G  F+  Y + E   +
Sbjct: 351 PADAPQLAELYGAAFEAEYTQLEQSNI 377



 Score = 44.3 bits (103), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE---LYNMVNKETGTRTPM 736
           V    L++ I+  QI +GTPY++Y DA N K+NQ +L  I        +V   + TRTP+
Sbjct: 382 VLARSLFYQIVVMQIRSGTPYIMYADAINAKNNQSHLGTIRATNLCTEIVQFSSRTRTPV 441

Query: 737 IS 738
            +
Sbjct: 442 CA 443


>gi|42523461|ref|NP_968841.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
 gi|39575667|emb|CAE79834.1| ribonucleoside-diphosphate reductase alpha chain [Bdellovibrio
           bacteriovorus HD100]
          Length = 801

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/512 (43%), Positives = 329/512 (64%), Gaps = 10/512 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WHGDI +FLEL+ NTG E  RA +L    W+PD FM+RVE+DA WSL  
Sbjct: 294 RKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFD 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       D++GE+F+  Y + E +  +I+Q+ AR L+  ++ +  +TG  +M +KD  N
Sbjct: 354 PKVVPHFVDTYGEEFEKAYVEAEEKKLYIKQLKARDLYSRMMKTLAQTGNGWMTFKDHAN 413

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            K+NQ       I  SNLCTEI+E TS  E AVCNL S+ L  ++   +  +NF KL   
Sbjct: 414 LKANQTGEAGNVIHLSNLCTEILEVTSDKETAVCNLGSVNLARHVE--NGQFNFEKLARS 471

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   K L++++D+NFYP+  A++SN + RP+G+GV GL D    M+LPFD   +R L+ 
Sbjct: 472 VRTAVKYLDRVVDINFYPIPTAQDSNHKWRPVGLGVMGLQDALFLMKLPFDSAAARDLSA 531

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E IYY AL  SCE++ + GP+  +E +  ++G+LQYD+WGVTP+    +  LKEKI 
Sbjct: 532 KVQEEIYYNALVTSCELSEKHGPHGAFEQTKAAKGLLQYDLWGVTPSQPERFEKLKEKIK 591

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I+G  E+ EP  SN++ R  LSGEF  +N +L+ DL  +G
Sbjct: 592 KHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLFKRETLSGEFMQINKYLVSDLKAMG 651

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W + +++++ + +GSIQD+  IP ++K+LY+TVWEIP K+++DMAADRGA+IDQ+QSLN
Sbjct: 652 IWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWEIPMKSLVDMAADRGAYIDQAQSLN 711

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-KTKMANAMASK---D 564
           ++       K+SSM+ + WK G+KT  YYLR++PA    + T+   +  AN  AS+   D
Sbjct: 712 LFQESPTIGKLSSMYMYAWKKGVKT-TYYLRSRPATKIAKTTVKASSNSANPTASESMMD 770

Query: 565 ARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           A   +E +     A   + C  +N E C   Q
Sbjct: 771 AAPAQEAKKSYSDA-EVIACSLENPEACEACQ 801



 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 103/232 (44%), Positives = 153/232 (65%), Gaps = 6/232 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YD+WGVTP+    +  LKEKI KHG+RNSL+IA  PTA+ A I+G  E+ EP  SN++
Sbjct: 568 LQYDLWGVTPSQPERFEKLKEKIKKHGLRNSLMIAIAPTATIASIVGCYEAIEPQVSNLF 627

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  +N +L+ DL  +G+W + +++++ + +GSIQD+  IP ++K+LY+TVWE
Sbjct: 628 KRETLSGEFMQINKYLVSDLKAMGIWTEEVRNEIKLQDGSIQDVAMIPPQIKELYRTVWE 687

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IP K+++DMAADRGA+IDQ+QSLN++       K+SSM+ + WK G+KT  YYLR++PA 
Sbjct: 688 IPMKSLVDMAADRGAYIDQAQSLNLFQESPTIGKLSSMYMYAWKKGVKT-TYYLRSRPAT 746

Query: 949 NAIQFTID-KTKMANAMASK---DTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+   +  AN  AS+   D    +E +     A   + C  +N E C
Sbjct: 747 KIAKTTVKASSNSANPTASESMMDAAPAQEAKKSYSDA-EVIACSLENPEAC 797



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 56/87 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WHGDI +FLEL+ NTG E  RA +L    W+PD FM+RVE+DA WSL  
Sbjct: 294 RKGAACVYLETWHGDIEEFLELRDNTGDEAKRAHNLNLANWVPDLFMKRVEADAMWSLFD 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P       D++GE+F+  Y + E + L
Sbjct: 354 PKVVPHFVDTYGEEFEKAYVEAEEKKL 380



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 58/92 (63%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D    M+LPFD   +R L+ ++ E IYY AL  SCE++ + GP+  +E +  +
Sbjct: 505 LGVMGLQDALFLMKLPFDSAAARDLSAKVQEEIYYNALVTSCELSEKHGPHGAFEQTKAA 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQYD+WGVTP+    +  LK     +GL+
Sbjct: 565 KGLLQYDLWGVTPSQPERFEKLKEKIKKHGLR 596


>gi|328719872|ref|XP_003246886.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 766

 Score =  454 bits (1168), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/465 (48%), Positives = 313/465 (67%), Gaps = 16/465 (3%)

Query: 91  RPGAF---AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147
           RP +    AIY E WH DI   ++  + T   + + ++    LWIPDEFMRRVE+D  WS
Sbjct: 296 RPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIKLKNSQLALWIPDEFMRRVENDQMWS 355

Query: 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQVPARKLWFAILDSQIETGTPYMLY 205
            M P+ C GL D  GE+FD+LYK+YE + K   +RQ+ A+KLW  I+ SQIETG P +L+
Sbjct: 356 FMSPDHCPGLIDVHGEEFDNLYKEYELKSKSFVMRQIEAKKLWSQIIQSQIETGLPLLLF 415

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN KSN+ +LGTI+C+    + V++T+ DEVA C  ASI+++M++  ++  ++F+KL
Sbjct: 416 KDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMFLT-SENIFDFSKL 474

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNM----RHRPIGIGVQGLADLFIQMRLPFDCN 321
           K+ AK +T +LNKII+ N   + +     +        IGIG+QGLADLFI+MR PFD  
Sbjct: 475 KETAKKITYDLNKIIENNNVILNKEDQLKLGLKQNQLAIGIGIQGLADLFIKMRYPFDNK 534

Query: 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWA 381
           E+R LN QI ETIYYGALEASCE+A+++GPY+TY  SP S+G+LQ+D+W V P++LWDW 
Sbjct: 535 EARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPTSKGLLQFDLWNVKPSNLWDWN 594

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-----EFQVV 436
           +LK KIA+HG+RNSL+     T   + I GN  S EP  +N+  R +  G     E QVV
Sbjct: 595 SLKTKIAQHGLRNSLVTVTSNTEVESTIFGNVNSIEPLDTNVKRRYISLGESKPKEIQVV 654

Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
           N +LL+DL +  LWD+ +  +L+ N GSIQ+I  +P  LK LY+T WEI QK ++ MAAD
Sbjct: 655 NPYLLKDLHDRKLWDEKLIPELVNNMGSIQEI-NLPDDLKQLYRTKWEIDQKVLVTMAAD 713

Query: 497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
           R  FIDQSQ+ ++ M + N   +S MH   WK+GLKTG+  LR K
Sbjct: 714 RAPFIDQSQAFSLNMVKANEDIISEMHISTWKMGLKTGVCQLRIK 758



 Score =  169 bits (428), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/182 (46%), Positives = 117/182 (64%), Gaps = 6/182 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W V P++LWDW +LK KIA+HG+RNSL+     T   + I GN  S EP  +N+ 
Sbjct: 578 LQFDLWNVKPSNLWDWNSLKTKIAQHGLRNSLVTVTSNTEVESTIFGNVNSIEPLDTNVK 637

Query: 829 SRRVLSGE-----FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
            R +  GE      QVVN +LL+DL +  LWD+ +  +L+ N GSIQ+I  +P  LK LY
Sbjct: 638 RRYISLGESKPKEIQVVNPYLLKDLHDRKLWDEKLIPELVNNMGSIQEI-NLPDDLKQLY 696

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           +T WEI QK ++ MAADR  FIDQSQ+ ++ M + N   +S MH   WK+GLKTG+  LR
Sbjct: 697 RTKWEIDQKVLVTMAADRAPFIDQSQAFSLNMVKANEDIISEMHISTWKMGLKTGVCQLR 756

Query: 944 TK 945
            K
Sbjct: 757 IK 758



 Score =  137 bits (346), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 78/104 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+QGLADLFI+MR PFD  E+R LN QI ETIYYGALEASCE+A+++GPY+TY  SP S
Sbjct: 515 IGIQGLADLFIKMRYPFDNKEARYLNIQIHETIYYGALEASCELASKNGPYKTYPNSPTS 574

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIET 696
           +G+LQ+D+W V P++LWDW +LK     +GL+     + S  E 
Sbjct: 575 KGLLQFDLWNVKPSNLWDWNSLKTKIAQHGLRNSLVTVTSNTEV 618



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%), Gaps = 3/86 (3%)

Query: 1   RPGAF---AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 57
           RP +    AIY E WH DI   ++  + T   + + ++    LWIPDEFMRRVE+D  WS
Sbjct: 296 RPKSIKGVAIYCELWHADIMKIIDQIRKTTIADIKLKNSQLALWIPDEFMRRVENDQMWS 355

Query: 58  LMCPNACRGLSDSWGEKFDDLYKKYE 83
            M P+ C GL D  GE+FD+LYK+YE
Sbjct: 356 FMSPDHCPGLIDVHGEEFDNLYKEYE 381



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 676 VLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V+  +   KLW  I+ SQIETG P +L+KDACN KSN+ +L  I+
Sbjct: 388 VMRQIEAKKLWSQIIQSQIETGLPLLLFKDACNAKSNESHLGTIQ 432



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 737 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKY 771
           +SD  YEIIMKN DRLN AI Y+ D+  ++FGFKY
Sbjct: 118 LSDDIYEIIMKNKDRLNEAINYENDYILDYFGFKY 152


>gi|168702495|ref|ZP_02734772.1| ribonucleoside-diphosphate reductase, alpha subunit [Gemmata
           obscuriglobus UQM 2246]
          Length = 797

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 214/466 (45%), Positives = 301/466 (64%), Gaps = 5/466 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG    R  +L    W+PD FMRRVE+   WSL  
Sbjct: 312 RKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEAGEPWSLFD 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D +G  FD  Y   EA+G  ++ VPAR L+  ++ +  ETG  +M +KDACN
Sbjct: 372 PKAVPHLTDLFGAAFDAAYTDAEAKGLAVKSVPARDLYARMMKTLAETGNGWMTFKDACN 431

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R  NQ  +    +  SNLCTEIVE TS  E AVCNL S+ L  ++      ++F  L + 
Sbjct: 432 RACNQTAEPGAVVHSSNLCTEIVEVTSAGETAVCNLGSVNLARHVT--RDGFDFAALAET 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + L++++DVNFYP  EA  SN R RP+G+GV GL D+F +++LPFD   +R L++
Sbjct: 490 VRTAVRFLDRVVDVNFYPTPEAAASNARWRPVGLGVMGLQDVFFKLKLPFDAPAARELSR 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IYY AL  SCE+AA  GP+ ++  +  + G+LQ+D+WGV PTD   WAAL+E++ 
Sbjct: 550 RIQEEIYYHALATSCELAAARGPHPSFASTRAAAGVLQFDLWGVEPTDPARWAALRERVR 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I+G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 610 TTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLFKRETLSGEFLQVNRYLVDDLKALG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW D ++ ++ + +GS+Q +  +P  L+ +Y+T WE+PQ+ ++DMAA+RG FIDQSQSLN
Sbjct: 670 LWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWEVPQRGLIDMAAERGPFIDQSQSLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           +++      KMSSM+ H WK GLKT  YYLR++PA    + T+  T
Sbjct: 730 LFLESPTIGKMSSMYMHAWKKGLKT-TYYLRSRPATAIAKTTVTPT 774



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/203 (47%), Positives = 135/203 (66%), Gaps = 6/203 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV PTD   WAAL+E++   G+RNSLL+A  PTA+ A I+G  E  EP  SN++
Sbjct: 586 LQFDLWGVEPTDPARWAALRERVRTTGLRNSLLVAIAPTATIASIVGAYECVEPQVSNLF 645

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+ DL  LGLW D ++ ++ + +GS+Q +  +P  L+ +Y+T WE
Sbjct: 646 KRETLSGEFLQVNRYLVDDLKALGLWTDAVRTKIKLADGSVQSLSELPAGLRAVYRTAWE 705

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQ+ ++DMAA+RG FIDQSQSLN+++      KMSSM+ H WK GLKT  YYLR++PA 
Sbjct: 706 VPQRGLIDMAAERGPFIDQSQSLNLFLESPTIGKMSSMYMHAWKKGLKT-TYYLRSRPAT 764

Query: 949 NAIQFTIDKTKMANAMASKDTRS 971
                 I KT +    A  DT +
Sbjct: 765 -----AIAKTTVTPTAAPADTSA 782



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 62/92 (67%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F +++LPFD   +R L+++I E IYY AL  SCE+AA  GP+ ++  +  +
Sbjct: 523 LGVMGLQDVFFKLKLPFDAPAARELSRRIQEEIYYHALATSCELAAARGPHPSFASTRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G+LQ+D+WGV PTD   WAAL+      GL+
Sbjct: 583 AGVLQFDLWGVEPTDPARWAALRERVRTTGLR 614



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 52/88 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG    R  +L    W+PD FMRRVE+   WSL  
Sbjct: 312 RKGACCVYLETWHADVEEFLELRDNTGDPARRTYNLNLANWVPDLFMRRVEAGEPWSLFD 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P A   L+D +G  FD  Y   EA+GL 
Sbjct: 372 PKAVPHLTDLFGAAFDAAYTDAEAKGLA 399


>gi|442322489|ref|YP_007362510.1| ribonucleoside-diphosphate reductase [Myxococcus stipitatus DSM
           14675]
 gi|441490131|gb|AGC46826.1| ribonucleoside-diphosphate reductase [Myxococcus stipitatus DSM
           14675]
          Length = 833

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/508 (43%), Positives = 325/508 (63%), Gaps = 8/508 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI DFLEL++NTG E  R  +L    W+PD FM+RVES+  WSL  
Sbjct: 332 RKGACCVYLESWHADIEDFLELRENTGDEARRTHNLNLANWVPDLFMKRVESEGDWSLFD 391

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D +G +F+  Y + EA G  +R+V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 392 PKVVPHLTDLFGAEFEKAYVEAEASGLAMRKVKARDLYARMMKTLAQTGNGWMTFKDISN 451

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  L    I  SNLCTEI+E TS+ E AVCNL S+ L   +   D  ++F +L+  
Sbjct: 452 RKSNQTGLPQNVIHLSNLCTEILEVTSQGETAVCNLGSLNLGRMV--VDGKFDFERLRAN 509

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
           A++  K L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F Q++L FD  E+R L+K
Sbjct: 510 AQLALKQLDRVIDLNYYPIPTAADSNRRWRPVGLGLMGLQDVFFQLKLAFDAPEARALSK 569

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SCE+A + G + ++  +  +QG  Q+  WGVTP D   W AL+ +I 
Sbjct: 570 KISEEIYFAALTTSCELAEQFGAHPSFPETRAAQGEFQFASWGVTPEDPARWDALRARIM 629

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           KHG+RNSL+IA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+RDL  LG
Sbjct: 630 KHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLVRDLQALG 689

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W++++++++ +  GSIQ++  +P+ L+ +Y+T WE+P ++++DMAADRGAFIDQSQSLN
Sbjct: 690 MWNESVRNRIKLAEGSIQELTELPETLRAIYRTAWELPMRSLIDMAADRGAFIDQSQSLN 749

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   N  K+SSM+F+ W+ GLKT  YYLR++PA    + T+  +    A A+      
Sbjct: 750 LFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPATRIAKATVSGS---GATATAPVTPA 805

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               A       A+ C  +N E C   Q
Sbjct: 806 PVAAASTVTDAEAVACSLENPEACEACQ 833



 Score =  209 bits (531), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 99/228 (43%), Positives = 148/228 (64%), Gaps = 4/228 (1%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++  WGVTP D   W AL+ +I KHG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 606 FQFASWGVTPEDPARWDALRARIMKHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLF 665

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+RDL  LG+W++++++++ +  GSIQ++  +P+ L+ +Y+T WE
Sbjct: 666 KRETLSGDFLQVNRYLVRDLQALGMWNESVRNRIKLAEGSIQELTELPETLRAIYRTAWE 725

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADRGAFIDQSQSLN+++   N  K+SSM+F+ W+ GLKT  YYLR++PA 
Sbjct: 726 LPMRSLIDMAADRGAFIDQSQSLNLFVETPNIGKLSSMYFYAWQKGLKT-TYYLRSRPAT 784

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+  +    A A+          A       A+ C  +N E C
Sbjct: 785 RIAKATVSGS---GATATAPVTPAPVAAASTVTDAEAVACSLENPEAC 829



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 59/98 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI DFLEL++NTG E  R  +L    W+PD FM+RVES+  WSL  
Sbjct: 332 RKGACCVYLESWHADIEDFLELRENTGDEARRTHNLNLANWVPDLFMKRVESEGDWSLFD 391

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P     L+D +G +F+  Y + EA GL   +  A  +Y
Sbjct: 392 PKVVPHLTDLFGAEFEKAYVEAEASGLAMRKVKARDLY 429



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 59/92 (64%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F Q++L FD  E+R L+K+I E IY+ AL  SCE+A + G + ++  +  +
Sbjct: 543 LGLMGLQDVFFQLKLAFDAPEARALSKKISEEIYFAALTTSCELAEQFGAHPSFPETRAA 602

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG  Q+  WGVTP D   W AL+   + +GL+
Sbjct: 603 QGEFQFASWGVTPEDPARWDALRARIMKHGLR 634


>gi|390957922|ref|YP_006421679.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           roseus DSM 18391]
 gi|390958264|ref|YP_006422021.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           roseus DSM 18391]
 gi|390412840|gb|AFL88344.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           roseus DSM 18391]
 gi|390413182|gb|AFL88686.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           roseus DSM 18391]
          Length = 825

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/516 (43%), Positives = 333/516 (64%), Gaps = 11/516 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI  FLEL++NTG    R  +L    WIPD FM+RV+ D  WSL  
Sbjct: 311 RKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMKRVDEDGMWSLFD 370

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +GE+F+  Y + E +  + RQ+ AR L+  ++ S  ETG  +M +KDACN
Sbjct: 371 PKLVPQLPDLFGEEFEKAYIQAEEDKIYYRQMKARDLYARMMRSLAETGNGWMTFKDACN 430

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP---ADKTYNFTKL 265
            K+NQ  L    I  SNLCTEI E TSKDE AVCNL S+ L  ++         ++F KL
Sbjct: 431 VKNNQTGLPGNVIHLSNLCTEITEVTSKDETAVCNLGSVNLGRHMKTDENGKTVFDFEKL 490

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +  ++    L+++ID+NFYPV++A  +N R RP+G+GV GL D+F QMRLPFD  E++ 
Sbjct: 491 ANTVRVAVPMLDRVIDINFYPVQQALKANNRWRPVGLGVMGLQDVFFQMRLPFDSPEAQA 550

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           L+ +I E IYY A+ A+ E+A ++GP+ ++  + ++QG  Q+D+W +TP++   W AL++
Sbjct: 551 LSTKIQEEIYYYAMLATTELAEKNGPHPSFNETRLAQGNFQFDLWKITPSEPERWEALRQ 610

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           +I + GVRNSLLIA  PTA+ A I+G  E  EP  SN++ R  LSGEF  VN +L+ +L 
Sbjct: 611 RIKQSGVRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRETLSGEFLQVNRYLINELK 670

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG+W++ M+ +L ++ GS+Q+I+ +  +LK +Y+TVWE+P ++++DMAA R A+IDQ+Q
Sbjct: 671 ALGMWNEEMRMKLKMSEGSVQNIDDLTDELKLIYRTVWEVPMRSLIDMAAARNAYIDQAQ 730

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA-SKD 564
           SLN++    N  ++SSM+ + WK GLKT  YYLR++PA    + T+ K  M++++  +  
Sbjct: 731 SLNLFSESPNIGRLSSMYMYAWKQGLKT-TYYLRSRPATKIAKTTVQKGAMSSSLPQTAQ 789

Query: 565 ARSQEEIQADQEQ----AMAAMICRRDNKEDCIGVQ 596
           A+ Q     + EQ    A AA+ C  +N E C   Q
Sbjct: 790 AQLQNVSVPEPEQQPIDASAAIACSLENPESCEACQ 825



 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 153/233 (65%), Gaps = 6/233 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W +TP++   W AL+++I + GVRNSLLIA  PTA+ A I+G  E  EP  SN++
Sbjct: 590 FQFDLWKITPSEPERWEALRQRIKQSGVRNSLLIAIAPTATIASIVGCYECIEPQISNLF 649

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+ +L  LG+W++ M+ +L ++ GS+Q+I+ +  +LK +Y+TVWE
Sbjct: 650 KRETLSGEFLQVNRYLINELKALGMWNEEMRMKLKMSEGSVQNIDDLTDELKLIYRTVWE 709

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAA R A+IDQ+QSLN++    N  ++SSM+ + WK GLKT  YYLR++PA 
Sbjct: 710 VPMRSLIDMAAARNAYIDQAQSLNLFSESPNIGRLSSMYMYAWKQGLKT-TYYLRSRPAT 768

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQ-----AMAAMICRRDNKEDC 996
              + T+ K  M++++        + +   + +     A AA+ C  +N E C
Sbjct: 769 KIAKTTVQKGAMSSSLPQTAQAQLQNVSVPEPEQQPIDASAAIACSLENPESC 821



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 1/91 (1%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI  FLEL++NTG    R  +L    WIPD FM+RV+ D  WSL  
Sbjct: 311 RKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMKRVDEDGMWSLFD 370

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFR 91
           P     L D +GE+F+  Y + E E  +Y+R
Sbjct: 371 PKLVPQLPDLFGEEFEKAYIQAE-EDKIYYR 400



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 59/83 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F QMRLPFD  E++ L+ +I E IYY A+ A+ E+A ++GP+ ++  + ++
Sbjct: 527 LGVMGLQDVFFQMRLPFDSPEAQALSTKIQEEIYYYAMLATTELAEKNGPHPSFNETRLA 586

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           QG  Q+D+W +TP++   W AL+
Sbjct: 587 QGNFQFDLWKITPSEPERWEALR 609


>gi|328722126|ref|XP_003247490.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Acyrthosiphon pisum]
          Length = 767

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/463 (48%), Positives = 312/463 (67%), Gaps = 15/463 (3%)

Query: 91  RPGAF---AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147
           RP +     IY E WH DI   ++  + T   + + ++    LWIPDEFMRRV++D  WS
Sbjct: 296 RPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDEFMRRVQNDQMWS 355

Query: 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQVPARKLWFAILDSQIETGTPYMLY 205
            M P+ C GL D  G++FD+LYK+YE + K   +RQ+ A+KLW  I+ SQIETG P +L+
Sbjct: 356 FMSPDHCPGLIDVHGKEFDNLYKEYELKSKSFVMRQIEAKKLWSQIIQSQIETGLPLLLF 415

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN KSN+ +LGTI+C+    + V++T+ DEVA C  ASI+++M++  ++  ++F+KL
Sbjct: 416 KDACNAKSNESHLGTIQCAGRNGDTVQFTASDEVATCTTASISVDMFLT-SENIFDFSKL 474

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHR----PIGIGVQGLADLFIQMRLPFDCN 321
           K+ AK +T +LNKIID N   + + +   +  +     IGIGVQGLADLFI+M+ PFD  
Sbjct: 475 KETAKKLTYDLNKIIDNNNVILNKEKQLELGLKQNQWAIGIGVQGLADLFIKMKYPFDNK 534

Query: 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWA 381
           E+R+LN QI E+IYYGALEASCE+A  +GPY+T+  SP S+G+LQ+D+W V P++LWDW 
Sbjct: 535 EARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTSKGLLQFDLWNVKPSNLWDWN 594

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-----EFQVV 436
            LK KI +HG+RNSL+     T   + I G   S EP  +N+  R +  G     E QVV
Sbjct: 595 NLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIEPLDTNVKRRYISLGESKPKEIQVV 654

Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
           N HLL+DL +  LWDDN+K QL+ N GS+Q+I+G+P+ LK LYKT WEI QK ++ MAAD
Sbjct: 655 NPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLPEDLKQLYKTKWEIDQKDLIIMAAD 714

Query: 497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 539
           R  FIDQSQ+ ++ M + +   +S M    WK+GLKT +  LR
Sbjct: 715 RAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLKTAVCQLR 757



 Score =  170 bits (431), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/180 (47%), Positives = 116/180 (64%), Gaps = 5/180 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+W V P++LWDW  LK KI +HG+RNSL+     T   + I G   S EP  +N+ 
Sbjct: 578 LQFDLWNVKPSNLWDWNNLKTKITQHGLRNSLVTVTSNTEVESTICGKVNSIEPLDTNVK 637

Query: 829 SRRVLSGE-----FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
            R +  GE      QVVN HLL+DL +  LWDDN+K QL+ N GS+Q+I+G+P+ LK LY
Sbjct: 638 RRYISLGESKPKEIQVVNPHLLKDLHDRKLWDDNLKYQLMNNMGSVQEIKGLPEDLKQLY 697

Query: 884 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLR 943
           KT WEI QK ++ MAADR  FIDQSQ+ ++ M + +   +S M    WK+GLKT +  LR
Sbjct: 698 KTKWEIDQKDLIIMAADRAPFIDQSQAFSLNMVKADEDIISEMLISTWKMGLKTAVCQLR 757



 Score =  133 bits (334), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 76/104 (73%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLADLFI+M+ PFD  E+R+LN QI E+IYYGALEASCE+A  +GPY+T+  SP S
Sbjct: 515 IGVQGLADLFIKMKYPFDNKEARVLNTQIHESIYYGALEASCELATTNGPYKTFPNSPTS 574

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIET 696
           +G+LQ+D+W V P++LWDW  LK     +GL+     + S  E 
Sbjct: 575 KGLLQFDLWNVKPSNLWDWNNLKTKITQHGLRNSLVTVTSNTEV 618



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 1   RPGAF---AIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 57
           RP +     IY E WH DI   ++  + T   + + ++    LWIPDEFMRRV++D  WS
Sbjct: 296 RPKSIKGVTIYCELWHADIMKVIDQIRMTSIADIKLKNCQLALWIPDEFMRRVQNDQMWS 355

Query: 58  LMCPNACRGLSDSWGEKFDDLYKKYE 83
            M P+ C GL D  G++FD+LYK+YE
Sbjct: 356 FMSPDHCPGLIDVHGKEFDNLYKEYE 381



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 31/45 (68%)

Query: 676 VLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V+  +   KLW  I+ SQIETG P +L+KDACN KSN+ +L  I+
Sbjct: 388 VMRQIEAKKLWSQIIQSQIETGLPLLLFKDACNAKSNESHLGTIQ 432



 Score = 47.4 bits (111), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 27/35 (77%)

Query: 737 ISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFKY 771
           +SD  YEIIMK+ DRLN AI Y+ D+  ++FGFKY
Sbjct: 118 LSDDIYEIIMKHKDRLNEAINYENDYILDYFGFKY 152


>gi|117928931|ref|YP_873482.1| ribonucleoside-diphosphate reductase subunit alpha [Acidothermus
           cellulolyticus 11B]
 gi|117649394|gb|ABK53496.1| ribonucleoside-diphosphate reductase, alpha subunit [Acidothermus
           cellulolyticus 11B]
          Length = 781

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/504 (45%), Positives = 319/504 (63%), Gaps = 14/504 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 286 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSLID 345

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG  FD  Y++ EAEG+++RQV AR L+  ++ +  ETG  +M +KDACN
Sbjct: 346 PDQAPELVDLWGADFDAAYRRAEAEGRYVRQVRARDLYAKMMRTLAETGNGWMTFKDACN 405

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            K NQ       +  SNLCTEIVE    DE+AVCNL SI L  ++   D   ++ +L+  
Sbjct: 406 AKCNQTGRPGNVVHLSNLCTEIVEVNRDDEIAVCNLGSINLARHVR--DGAVDWDRLRRT 463

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I    L++++D+NFYP  EA  SN + RPIG+GV GL D+F  +RLPFD  E+  L+ 
Sbjct: 464 VQIAVPLLDRVVDINFYPTPEAARSNEKWRPIGLGVMGLQDVFFALRLPFDSGEALELST 523

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY  ALE S E+AA  GP+  +  +  + G LQ D+WGVTPT    +AA+KE+IA
Sbjct: 524 RIAEEIYLTALEVSAELAAEYGPHPAFPETRAAAGYLQPDLWGVTPTQQERYAAIKERIA 583

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLLIA  PTA+ A I G  ES EP  SN++ R  LSGEF  VN  L+ +L   G
Sbjct: 584 AVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRETLSGEFLQVNTALVNELKTRG 643

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++ +   +GS+Q +  +P++++ +++T WE+PQK ++D+AA RG +IDQSQSLN
Sbjct: 644 LWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQKALIDLAAARGPYIDQSQSLN 703

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++MA    +K+SSM+ + W  GLKT  YYLR++PA    Q T+  T      +S D R  
Sbjct: 704 LFMAAPTISKLSSMYRYAWASGLKT-TYYLRSRPATRIQQATVTVT------SSDDVR-- 754

Query: 569 EEIQADQEQAMAAMICRRDNKEDC 592
            ++ A+   +  A  C  +N E C
Sbjct: 755 -DVMANPSTSKPATSCSLENPETC 777



 Score =  192 bits (488), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 98/225 (43%), Positives = 143/225 (63%), Gaps = 10/225 (4%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WGVTPT    +AA+KE+IA  G+RNSLLIA  PTA+ A I G  ES EP  SN++ R 
Sbjct: 563 DLWGVTPTQQERYAAIKERIAAVGLRNSLLIAIAPTATIASIAGCYESIEPMVSNLFKRE 622

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN  L+ +L   GLW   +++ +   +GS+Q +  +P++++ +++T WE+PQ
Sbjct: 623 TLSGEFLQVNTALVNELKTRGLWTKEIREAIKRADGSVQGLTVLPEEVRRVFRTAWELPQ 682

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++D+AA RG +IDQSQSLN++MA    +K+SSM+ + W  GLKT  YYLR++PA    
Sbjct: 683 KALIDLAAARGPYIDQSQSLNLFMAAPTISKLSSMYRYAWASGLKT-TYYLRSRPATRIQ 741

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+  T      +S D R   ++ A+   +  A  C  +N E C
Sbjct: 742 QATVTVT------SSDDVR---DVMANPSTSKPATSCSLENPETC 777



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 58/86 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 286 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTYNLNLANWIPDEFMRRVEADELWSLID 345

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D WG  FD  Y++ EAEG
Sbjct: 346 PDQAPELVDLWGADFDAAYRRAEAEG 371



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F  +RLPFD  E+  L+ +I E IY  ALE S E+AA  GP+  +  +  +
Sbjct: 497 LGVMGLQDVFFALRLPFDSGEALELSTRIAEEIYLTALEVSAELAAEYGPHPAFPETRAA 556

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ D+WGVTPT    +AA+K      GL+
Sbjct: 557 AGYLQPDLWGVTPTQQERYAAIKERIAAVGLR 588


>gi|389730177|ref|ZP_10189352.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           sp. 115]
 gi|388440949|gb|EIL97269.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodanobacter
           sp. 115]
          Length = 856

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/509 (44%), Positives = 312/509 (61%), Gaps = 15/509 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG E  RA +L    WIPDEFMRRVE+D  WSL  
Sbjct: 360 RKGAACVYLETWHADIEEFLELRDNTGDEARRAHNLNLANWIPDEFMRRVETDGDWSLFD 419

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       DSWGE F+  Y+K EAEG   + V AR L+  +L +  +TG  +M +KD CN
Sbjct: 420 PKVVPHFVDSWGETFETAYRKAEAEGLAAKTVKARDLYARMLRTLAQTGNGWMTFKDRCN 479

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ       I  SNLCTEI+E T+  E AVCNL SI L+ ++   D   ++ KL   
Sbjct: 480 ATSNQTAKADNVIHLSNLCTEILEVTNAGETAVCNLGSINLSRHV--IDGAVDYDKLATT 537

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + LN++ID+NFYP++ A  +N + RP+G+GV GL D+F ++RLPFD  E+  L+ 
Sbjct: 538 VRTAVRQLNRVIDLNFYPIDTAATANRKWRPVGLGVMGLQDVFFKLRLPFDSAEALALSS 597

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E IY+ AL  S E+A  +G +  +  S  + G LQ+D W    P D   W AL+E I
Sbjct: 598 RIAEEIYFHALSQSNELAEAEGAHPGFAESRAASGDLQFDHWPNAKPHDDARWNALRENI 657

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
              G+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F VVN +L+ +L  L
Sbjct: 658 KAKGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLVVNRYLVDELKTL 717

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW   ++D + +  GSIQ I  IP++L+ +Y+TVWE+PQK ++++ A RGA+IDQSQSL
Sbjct: 718 GLWTSEVRDAIKLAEGSIQGITAIPERLRQIYRTVWELPQKALIELGAARGAYIDQSQSL 777

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++M   N  ++SSM+ + WK G+KT  YYLR++PA    + T+   K         A +
Sbjct: 778 NLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPATKIAKTTVSAGK---------AEA 827

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +     DQ+QA AA+ C  +N E C   Q
Sbjct: 828 KAAPAIDQDQASAAVFCSLENPEYCEACQ 856



 Score =  199 bits (505), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 102/229 (44%), Positives = 143/229 (62%), Gaps = 11/229 (4%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W    P D   W AL+E I   G+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 634 LQFDHWPNAKPHDDARWNALRENIKAKGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 693

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F VVN +L+ +L  LGLW   ++D + +  GSIQ I  IP++L+ +Y+TVW
Sbjct: 694 FKRETLSGDFLVVNRYLVDELKTLGLWTSEVRDAIKLAEGSIQGITAIPERLRQIYRTVW 753

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK ++++ A RGA+IDQSQSLN++M   N  ++SSM+ + WK G+KT  YYLR++PA
Sbjct: 754 ELPQKALIELGAARGAYIDQSQSLNLFMENPNIGQLSSMYMYAWKAGIKT-TYYLRSRPA 812

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
               + T+   K A A A+           DQ+QA AA+ C  +N E C
Sbjct: 813 TKIAKTTVSAGK-AEAKAAPAI--------DQDQASAAVFCSLENPEYC 852



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG E  RA +L    WIPDEFMRRVE+D  WSL  
Sbjct: 360 RKGAACVYLETWHADIEEFLELRDNTGDEARRAHNLNLANWIPDEFMRRVETDGDWSLFD 419

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P       DSWGE F+  Y+K EAEGL 
Sbjct: 420 PKVVPHFVDSWGETFETAYRKAEAEGLA 447



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+  L+ +I E IY+ AL  S E+A  +G +  +  S  +
Sbjct: 571 LGVMGLQDVFFKLRLPFDSAEALALSSRIAEEIYFHALSQSNELAEAEGAHPGFAESRAA 630

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W    P D   W AL+      GL+
Sbjct: 631 SGDLQFDHWPNAKPHDDARWNALRENIKAKGLR 663


>gi|320107275|ref|YP_004182865.1| ribonucleoside-diphosphate reductase subunit alpha [Terriglobus
           saanensis SP1PR4]
 gi|319925796|gb|ADV82871.1| ribonucleoside-diphosphate reductase, alpha subunit [Terriglobus
           saanensis SP1PR4]
          Length = 815

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/504 (43%), Positives = 324/504 (64%), Gaps = 10/504 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI  FLEL++NTG    R  +L    WIPD FM+RV+ D  WSL  
Sbjct: 316 RKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRVDEDGIWSLFD 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       D +G++F++ Y + E + K+ RQ+ AR L+  ++ S  ETG  +M +KDACN
Sbjct: 376 PKEVPTFPDLYGKEFEEAYIQAETDKKYHRQIKARDLYMRMMRSLAETGNGWMTFKDACN 435

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
            K+NQ       +  SNLCTEI E TSKDE AVCNL S+ L  ++ P  K ++F KL + 
Sbjct: 436 IKNNQTGKPGNVVHLSNLCTEITEVTSKDETAVCNLGSVNLARHVTPEGK-FDFEKLANT 494

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +I    L+++ID+N+YPV +A ++N R RP+G+GV GL D+F QMR+PFD  E+  ++ 
Sbjct: 495 VRIAVPMLDRVIDINYYPVPQAASANARWRPVGLGVMGLQDVFFQMRIPFDSPEALAIST 554

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IYY A+ AS E+A R+G + +++ + +++G  Q+D+W V P D   W AL+++I 
Sbjct: 555 KIQEEIYYYAVLASVELAEREGKHPSFDETRLAKGEFQFDLWNVKPADPERWDALRQRIL 614

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLLIA  PTA+ A I+G  E  EP  SN++ R  LSGEF  VN +L+ +L + G
Sbjct: 615 KSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLFKRETLSGEFLQVNRYLIEELKQRG 674

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +W + M+ ++ ++ GS+Q +E +P+ L+ +Y+TVWE+P ++++DMA DR AFIDQSQSLN
Sbjct: 675 MWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWEVPMRSLIDMARDRNAFIDQSQSLN 734

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++    N  ++SSM+ H WK GLKT  YYLR++PA    + T+ K   A+A  +  A   
Sbjct: 735 LFAESPNIGRLSSMYMHAWKSGLKT-TYYLRSRPATKISKTTVSKAAAASAALADTASRP 793

Query: 569 EEIQADQEQAMAAMICRRDNKEDC 592
           +   A+      A+ C  +N E C
Sbjct: 794 KVADAE------AIACSLENPESC 811



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 97/228 (42%), Positives = 146/228 (64%), Gaps = 7/228 (3%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V P D   W AL+++I K G+RNSLLIA  PTA+ A I+G  E  EP  SN++
Sbjct: 591 FQFDLWNVKPADPERWDALRQRILKSGIRNSLLIAIAPTATIASIVGCYECIEPQISNLF 650

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+ +L + G+W + M+ ++ ++ GS+Q +E +P+ L+ +Y+TVWE
Sbjct: 651 KRETLSGEFLQVNRYLIEELKQRGMWTEEMRVRMKMSEGSVQAMEDLPEDLRAVYRTVWE 710

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMA DR AFIDQSQSLN++    N  ++SSM+ H WK GLKT  YYLR++PA 
Sbjct: 711 VPMRSLIDMARDRNAFIDQSQSLNLFAESPNIGRLSSMYMHAWKSGLKT-TYYLRSRPAT 769

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T+ K   A+A  +      +   A+      A+ C  +N E C
Sbjct: 770 KISKTTVSKAAAASAALADTASRPKVADAE------AIACSLENPESC 811



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 51/85 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI  FLEL++NTG    R  +L    WIPD FM+RV+ D  WSL  
Sbjct: 316 RKGACCVYLEPWHADIESFLELRENTGDLSRRTYNLNLANWIPDLFMQRVDEDGIWSLFD 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P       D +G++F++ Y + E +
Sbjct: 376 PKEVPTFPDLYGKEFEEAYIQAETD 400



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F QMR+PFD  E+  ++ +I E IYY A+ AS E+A R+G + +++ + ++
Sbjct: 528 LGVMGLQDVFFQMRIPFDSPEALAISTKIQEEIYYYAVLASVELAEREGKHPSFDETRLA 587

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G  Q+D+W V P D   W AL+   L  G++
Sbjct: 588 KGEFQFDLWNVKPADPERWDALRQRILKSGIR 619


>gi|357415821|ref|YP_004928841.1| ribonucleoside-diphosphate reductase subunit alpha
           [Pseudoxanthomonas spadix BD-a59]
 gi|355333399|gb|AER54800.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudoxanthomonas spadix BD-a59]
          Length = 807

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/508 (45%), Positives = 314/508 (61%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ DFLEL+ N G +  R  +L    W+PD FM+RVE+DA WSL  
Sbjct: 313 RKGAACVYLETWHADLEDFLELRDNAGDDARRTHNLNLANWVPDLFMQRVEADAPWSLFD 372

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T   L D +GE F+  Y + EA+GK  + + ARKL+  ++ +  ETG  +M +KD CN
Sbjct: 373 PKTTPELPDLYGEAFEHAYLQAEAQGKATKTIAARKLYARMMRTLAETGNGWMTFKDKCN 432

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +    I  SNLCTEI+E TS DE AVCNL SI L  + +     ++F KL   
Sbjct: 433 LASNQTLRAGNVIHLSNLCTEILEVTSSDETAVCNLGSINLGRHFD-DHGDFDFDKLAQT 491

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            ++    L+++ID+NFYP++ AR  N+R RP+G+G  GL D+F + RL FD  ++R L+ 
Sbjct: 492 VRLAVHQLDRVIDLNFYPIQTARRGNLRWRPVGLGCMGLQDVFFKKRLAFDSAQARALSN 551

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I ETIY+ ALE SCE+A + G + ++  +  + G LQ+D W VTP D   W AL+ +I 
Sbjct: 552 KIAETIYFHALETSCELAQQRGRHPSFADTRAASGALQFDAWNVTPEDTARWDALRARIR 611

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L +LG
Sbjct: 612 QHGLRNSLLIAIAPTATIASIAGCYECVEPQLSNLFKRETLSGDFLQVNRYLVDELKKLG 671

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   M+D + +  GSIQ I  IPQ L+ +Y+T WEIP ++++DMAA RGAFIDQS SLN
Sbjct: 672 LWTAQMRDAIKLAEGSIQGIAQIPQTLRQIYRTAWEIPMRSLIDMAAGRGAFIDQSASLN 731

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M   N   +SSM+ + WK GLKT  YYLR++PA          T++A A  S DA SQ
Sbjct: 732 LFMESPNIGALSSMYMYAWKQGLKT-TYYLRSRPA----------TRIAKATLSHDA-SQ 779

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                       A+ C  +N E C   Q
Sbjct: 780 APAPKPAFTPDEAVSCSLENPEGCEACQ 807



 Score =  200 bits (508), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 139/229 (60%), Gaps = 12/229 (5%)

Query: 768 GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
             ++D W VTP D   W AL+ +I +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 587 ALQFDAWNVTPEDTARWDALRARIRQHGLRNSLLIAIAPTATIASIAGCYECVEPQLSNL 646

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F  VN +L+ +L +LGLW   M+D + +  GSIQ I  IPQ L+ +Y+T W
Sbjct: 647 FKRETLSGDFLQVNRYLVDELKKLGLWTAQMRDAIKLAEGSIQGIAQIPQTLRQIYRTAW 706

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           EIP ++++DMAA RGAFIDQS SLN++M   N   +SSM+ + WK GLKT  YYLR++PA
Sbjct: 707 EIPMRSLIDMAAGRGAFIDQSASLNLFMESPNIGALSSMYMYAWKQGLKT-TYYLRSRPA 765

Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                     T++A A  S D  SQ            A+ C  +N E C
Sbjct: 766 ----------TRIAKATLSHDA-SQAPAPKPAFTPDEAVSCSLENPEGC 803



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ DFLEL+ N G +  R  +L    W+PD FM+RVE+DA WSL  
Sbjct: 313 RKGAACVYLETWHADLEDFLELRDNAGDDARRTHNLNLANWVPDLFMQRVEADAPWSLFD 372

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D +GE F+  Y + EA+G
Sbjct: 373 PKTTPELPDLYGEAFEHAYLQAEAQG 398



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 57/92 (61%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F + RL FD  ++R L+ +I ETIY+ ALE SCE+A + G + ++  +  +
Sbjct: 525 LGCMGLQDVFFKKRLAFDSAQARALSNKIAETIYFHALETSCELAQQRGRHPSFADTRAA 584

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G LQ+D W VTP D   W AL+     +GL+
Sbjct: 585 SGALQFDAWNVTPEDTARWDALRARIRQHGLR 616


>gi|290957505|ref|YP_003488687.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
 gi|260647031|emb|CBG70130.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           scabiei 87.22]
          Length = 802

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 314/508 (61%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 306 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 365

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+F+  Y+K EA G   + + AR L+  ++ +  +TG  +M +KDA N
Sbjct: 366 PADVPELVDLWGEEFEAAYRKAEANGLARKTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 425

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L + 
Sbjct: 426 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDLDWERLDET 485

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 486 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 545

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  ++G+L  D +GV P     WAAL+E++A
Sbjct: 546 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYGVEPAWSERWAALRERVA 605

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+RDL ELG
Sbjct: 606 ATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVRDLKELG 665

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 666 VWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 725

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A   +  + +
Sbjct: 726 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARAAQGQARQPE 774

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +   Q  +  A+ C  +N E C   Q
Sbjct: 775 TTVPVQQATSEEALACSLENPESCEACQ 802



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 11/225 (4%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV P     WAAL+E++A  G+RN+LL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 585 DHYGVEPAWSERWAALRERVAATGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRE 644

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+RDL ELG+WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ
Sbjct: 645 TLSGEFLQVNSYLVRDLKELGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQ 704

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 705 RGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA---- 759

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A   +  + +  +   Q  +  A+ C  +N E C
Sbjct: 760 ------TRIARAAQGQARQPETTVPVQQATSEEALACSLENPESC 798



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 306 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 365

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+F+  Y+K EA GL 
Sbjct: 366 PADVPELVDLWGEEFEAAYRKAEANGLA 393



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 519 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 578

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV P     WAAL+      G++
Sbjct: 579 RGVLHPDHYGVEPAWSERWAALRERVAATGMR 610


>gi|302542645|ref|ZP_07294987.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302460263|gb|EFL23356.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 804

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/509 (43%), Positives = 315/509 (61%), Gaps = 10/509 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 303 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+K EAEG+ ++QVPAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 363 PVDAPELVDLWGEEFDAAYRKAEAEGRALKQVPARQLYSRMMRTLAQTGNGWMTFKDAAN 422

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L+ ++   D   ++ +L   
Sbjct: 423 RTANQTAEAGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLSAHLG-EDGEMDWERLDRT 481

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP EEA  SN R RP+G+G+ GL D+F ++RLPFD  E++ L+ 
Sbjct: 482 VRTAVTFLDRVVDINFYPTEEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQALST 541

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E I   A EASC++A R GP+  +  +  ++G+L  D + G        W AL+ ++
Sbjct: 542 RISERIMLAAYEASCDLAERHGPHPAWAETRTARGVLHPDHYTGAQAAWPERWEALRTRM 601

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN++L+ DL +L
Sbjct: 602 ATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNYLVNDLKKL 661

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+WD   +D L   NGS+QD+  +PQ ++DLY+T WEIPQ+ ++DMAA R  ++DQSQSL
Sbjct: 662 GVWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSL 721

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++MA     K+SSM+ + WK G+KT  YYLR++PA    Q    +   A A     A  
Sbjct: 722 NLFMAAPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATRIAQSA--RGGAATATTPVPAPV 778

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +   D+  A+A   C  +N E C   Q
Sbjct: 779 PAQQTPDEADAVA---CSLENPESCEACQ 804



 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 132/213 (61%), Gaps = 6/213 (2%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN++
Sbjct: 594 WEALRTRMATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNNY 653

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   +D L   NGS+QD+  +PQ ++DLY+T WEIPQ+ ++DMAA R  
Sbjct: 654 LVNDLKKLGVWDTQTRDALREANGSVQDLSWVPQDVRDLYRTAWEIPQRALIDMAAARTP 713

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA    Q        A  
Sbjct: 714 YLDQSQSLNLFMAAPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATRIAQSARGGAATATT 772

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                  +Q+    D+  A+A   C  +N E C
Sbjct: 773 PVPAPVPAQQ--TPDEADAVA---CSLENPESC 800



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 57/86 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 303 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNVAHWIPDEFMRRVEADGDWSLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D WGE+FD  Y+K EAEG
Sbjct: 363 PVDAPELVDLWGEEFDAAYRKAEAEG 388



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RLPFD  E++ L+ +I E I   A EASC++A R GP+  +  +  +
Sbjct: 515 LGLMGLQDVFFRLRLPFDSPEAQALSTRISERIMLAAYEASCDLAERHGPHPAWAETRTA 574

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + G        W AL+      G++
Sbjct: 575 RGVLHPDHYTGAQAAWPERWEALRTRMATTGMR 607


>gi|444917550|ref|ZP_21237645.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Cystobacter fuscus DSM 2262]
 gi|444710891|gb|ELW51852.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Cystobacter fuscus DSM 2262]
          Length = 796

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 317/511 (62%), Gaps = 23/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG E  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 304 RKGAACVYLETWHADLEEFLELRDNTGDEARRTHNLNLANWVPDLFMKRVEADGAWSLFD 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D +GE F+  Y + EA+G   + + AR+++  ++ +  +TG  +M +KD  N
Sbjct: 364 PKVVPHLTDLYGEDFERAYLEAEAKGLAAKSIKAREMYARMMRTLAQTGNGWMTFKDKSN 423

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP---ADKTYNFTKL 265
           R  NQ       +  SNLCTEI+E TSKDE AVCNL SI L  + +       T+++ KL
Sbjct: 424 RACNQTARPGRVVHLSNLCTEILEVTSKDETAVCNLGSINLARHTSTDAQGKVTFDWEKL 483

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               +   + L+++ID+N+YP+  A +SN R RP+G+G+ GL D+F QMRLPFD  E+R 
Sbjct: 484 AQTVRTAVRQLDRVIDLNYYPIATAESSNQRWRPVGLGIMGLQDVFFQMRLPFDAPEART 543

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           L++++ E IY+ AL AS E+AA  G +  +  +  +QG LQ++ WGVTP D   W AL+ 
Sbjct: 544 LSRKVSEEIYFHALSASVELAAEHGAHPAFPETRAAQGELQFEAWGVTPEDSARWEALRT 603

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++ + G+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F  VN +L+ +L 
Sbjct: 604 RVKQTGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQVNRYLVEELK 663

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG W++ M+ ++ +  GSIQ I  IP +++ +Y+T WE+P ++++DMAADRGAFIDQSQ
Sbjct: 664 ALGKWNEEMRTRIKLAEGSIQGISEIPAEVRAIYRTAWELPMRSLIDMAADRGAFIDQSQ 723

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN++M   N  ++SSM+ + WK GLKT  YYLR++PA    + T++  +          
Sbjct: 724 SLNLFMESPNIGQLSSMYMYAWKKGLKT-TYYLRSRPATRIAKATVEAPR---------- 772

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               E +  + QA+A   C  +N E C   Q
Sbjct: 773 ----EEKPTEAQAIA---CSLENPEACEACQ 796



 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/228 (42%), Positives = 142/228 (62%), Gaps = 18/228 (7%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +++ WGVTP D   W AL+ ++ + G+RNSLLIA  PTA+ A I G  E  EP  SN++
Sbjct: 583 LQFEAWGVTPEDSARWEALRTRVKQTGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLF 642

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  VN +L+ +L  LG W++ M+ ++ +  GSIQ I  IP +++ +Y+T WE
Sbjct: 643 KRETLSGDFLQVNRYLVEELKALGKWNEEMRTRIKLAEGSIQGISEIPAEVRAIYRTAWE 702

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADRGAFIDQSQSLN++M   N  ++SSM+ + WK GLKT  YYLR++PA 
Sbjct: 703 LPMRSLIDMAADRGAFIDQSQSLNLFMESPNIGQLSSMYMYAWKKGLKT-TYYLRSRPAT 761

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              + T++  +       K T +Q            A+ C  +N E C
Sbjct: 762 RIAKATVEAPR-----EEKPTEAQ------------AIACSLENPEAC 792



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 55/88 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG E  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 304 RKGAACVYLETWHADLEEFLELRDNTGDEARRTHNLNLANWVPDLFMKRVEADGAWSLFD 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D +GE F+  Y + EA+GL 
Sbjct: 364 PKVVPHLTDLYGEDFERAYLEAEAKGLA 391



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 59/92 (64%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F QMRLPFD  E+R L++++ E IY+ AL AS E+AA  G +  +  +  +
Sbjct: 520 LGIMGLQDVFFQMRLPFDAPEARTLSRKVSEEIYFHALSASVELAAEHGAHPAFPETRAA 579

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG LQ++ WGVTP D   W AL+      GL+
Sbjct: 580 QGELQFEAWGVTPEDSARWEALRTRVKQTGLR 611


>gi|453055153|gb|EMF02600.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           mobaraensis NBRC 13819 = DSM 40847]
          Length = 805

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/509 (43%), Positives = 318/509 (62%), Gaps = 11/509 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 305 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 364

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +G++FD  Y++YEAEGK ++ +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 365 PADTPDLVDLYGDEFDAAYRRYEAEGKAVKTIPARVLYARMMRTLAQTGNGWMTFKDAAN 424

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  ++  AD   ++ KL   
Sbjct: 425 RTANQTAEPGQVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLG-ADGEMDWEKLDRT 483

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A +SN R RP+G+G+ GL D+F ++RLPFD  E++ L+ 
Sbjct: 484 VRTAVTFLDRVVDINFYPTEQAGSSNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALST 543

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-PTDLWDWAALKEKI 387
           +I E I   A EAS ++A R GP+  +  +  ++G+L  D +  T PT    W AL+ +I
Sbjct: 544 RISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPDHYPNTEPTWAERWDALRARI 603

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +L
Sbjct: 604 ASVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVEDLKKL 663

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           G+WD   +D +   NGSIQD+  IPQ+++DLY+T WEIPQ+ ++DMAA R  ++DQSQSL
Sbjct: 664 GVWDRATRDAMTDANGSIQDMAWIPQEVRDLYRTAWEIPQRALIDMAAARTPYLDQSQSL 723

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++MA     K+SSM+ + WK G+KT  YYLR++PA    +        +++  +     
Sbjct: 724 NLFMASPTIGKLSSMYAYAWKQGIKT-TYYLRSRPATRIARAASGGAAASSSAPATVPVQ 782

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           Q    AD      A+ C  +N E C   Q
Sbjct: 783 QAAPDAD------AIACSLENPESCEACQ 805



 Score =  182 bits (462), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 134/219 (61%), Gaps = 7/219 (3%)

Query: 778 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 837
           PT    W AL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF
Sbjct: 590 PTWAERWDALRARIASVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEF 649

Query: 838 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897
             VN +L+ DL +LG+WD   +D +   NGSIQD+  IPQ+++DLY+T WEIPQ+ ++DM
Sbjct: 650 LQVNTYLVEDLKKLGVWDRATRDAMTDANGSIQDMAWIPQEVRDLYRTAWEIPQRALIDM 709

Query: 898 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957
           AA R  ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA    +     
Sbjct: 710 AAARTPYLDQSQSLNLFMASPTIGKLSSMYAYAWKQGIKT-TYYLRSRPATRIARAASGG 768

Query: 958 TKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              +++  +     Q    AD      A+ C  +N E C
Sbjct: 769 AAASSSAPATVPVQQAAPDAD------AIACSLENPESC 801



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 305 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 364

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D +G++FD  Y++YEAEG
Sbjct: 365 PADTPDLVDLYGDEFDAAYRRYEAEG 390



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R GP+  +  +  +
Sbjct: 517 LGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLAAYEASADLAERHGPHPAWSATRTA 576

Query: 653 QGILQYDMWGVT-PTDLWDWAALKVLALVYGLK 684
           +G+L  D +  T PT    W AL+      G++
Sbjct: 577 RGVLHPDHYPNTEPTWAERWDALRARIASVGMR 609


>gi|374986758|ref|YP_004962253.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           bingchenggensis BCW-1]
 gi|297157410|gb|ADI07122.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 799

 Score =  434 bits (1116), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/510 (42%), Positives = 312/510 (61%), Gaps = 17/510 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 303 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y K EAEG  ++ VPAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 363 PVDAPALVDLWGEEFDAAYTKAEAEGLAVKTVPARQLYARMMRTLAQTGNGWMTFKDAAN 422

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++   D   ++ +L   
Sbjct: 423 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLG-EDGQMDWARLDAT 481

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP +EA  SN R RP+G+G+ GL D+F ++RLPFD  E++ L+ 
Sbjct: 482 VRTAVTFLDRVVDINFYPTQEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQQLST 541

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD--WAALKEK 386
           QI E I   A EASC +A R GP+  +  +  ++G+L  D +       W   WAAL+E+
Sbjct: 542 QISERIMLAAYEASCALAERHGPHPAWSATRTARGVLHPDHY-TDAVATWPERWAALRER 600

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +
Sbjct: 601 MAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKK 660

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD   ++ L  +NGS+QD   +P+++++LY+T WE+PQ+ ++DMAA R  ++DQSQS
Sbjct: 661 LGVWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTPYLDQSQS 720

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN++MA     K+SSM+ + WK G+KT  YYLR++PA    Q           + ++ A 
Sbjct: 721 LNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATRIAQSARAAAPATVPIPTQQAP 779

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
              E+ A          C  +N E C   Q
Sbjct: 780 VDPEVIA----------CSLENPESCEACQ 799



 Score =  182 bits (461), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 120/164 (73%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 594 WAALRERMAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 653

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L  +NGS+QD   +P+++++LY+T WE+PQ+ ++DMAA R  
Sbjct: 654 LVNDLKKLGVWDAQSREALRESNGSVQDFSWVPKEVRELYRTAWEVPQRALIDMAAARTP 713

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA
Sbjct: 714 YLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPA 756



 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 303 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y K EAEGL 
Sbjct: 363 PVDAPALVDLWGEEFDAAYTKAEAEGLA 390



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RLPFD  E++ L+ QI E I   A EASC +A R GP+  +  +  +
Sbjct: 515 LGLMGLQDVFFRLRLPFDSPEAQQLSTQISERIMLAAYEASCALAERHGPHPAWSATRTA 574

Query: 653 QGILQYDMWGVTPTDLWD--WAALK 675
           +G+L  D +       W   WAAL+
Sbjct: 575 RGVLHPDHY-TDAVATWPERWAALR 598


>gi|297202282|ref|ZP_06919679.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
 gi|197710198|gb|EDY54232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sviceus ATCC 29083]
          Length = 796

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/511 (43%), Positives = 312/511 (61%), Gaps = 26/511 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +DA+WSL  
Sbjct: 307 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAEWSLFS 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+K EAEG   R +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 367 PADVPELVDLWGEEFDAAYRKAEAEGLARRTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 426

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  +++      ++ +L   
Sbjct: 427 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTTSGDIDWERLDAT 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F ++RLPFD  E+R L+ 
Sbjct: 487 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSPEARALST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WD--WAALKE 385
           +I E I   A EAS ++A R GP   +E +  +QG+L  D +    TDL W   WAAL+E
Sbjct: 547 RIAERIMLAAYEASADLAERSGPLPAWEKTRTAQGVLHPDHYA---TDLAWPERWAALRE 603

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L 
Sbjct: 604 RMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELK 663

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQ+Q
Sbjct: 664 KLGVWDARTREALREANGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQAQ 723

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A      
Sbjct: 724 SLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA------ 766

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +Q  +   Q     A+ C  +N E C   Q
Sbjct: 767 -AQATVPVQQPAPEDAVACSLENPESCEACQ 796



 Score =  176 bits (445), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 18/213 (8%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 598 WAALRERMAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 657

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 658 LVAELKKLGVWDARTREALREANGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 717

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 718 FLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 766

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                  +Q  +   Q     A+ C  +N E C
Sbjct: 767 -------AQATVPVQQPAPEDAVACSLENPESC 792



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +DA+WSL  
Sbjct: 307 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAEWSLFS 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y+K EAEGL 
Sbjct: 367 PADVPELVDLWGEEFDAAYRKAEAEGLA 394



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 6/95 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E+R L+ +I E I   A EAS ++A R GP   +E +  +
Sbjct: 520 LGAMGLQDVFFKLRLPFDSPEARALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTA 579

Query: 653 QGILQYDMWGVTPTDL-WD--WAALKVLALVYGLK 684
           QG+L  D +    TDL W   WAAL+    V GL+
Sbjct: 580 QGVLHPDHYA---TDLAWPERWAALRERMAVTGLR 611


>gi|395771543|ref|ZP_10452058.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           acidiscabies 84-104]
          Length = 788

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 317/508 (62%), Gaps = 20/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA+WSL  
Sbjct: 299 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADAEWSLFS 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG++FD  Y+  EA+G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 359 PSDVPELVDLWGDEFDAAYRAAEAKGLAKKTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 418

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++PA +  ++ +L + 
Sbjct: 419 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPASQDIDWERLDET 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++R+PFD  E++ L+ 
Sbjct: 479 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRIPFDSPEAKELST 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS  +A R GP   +E +  ++G+L  D +GV  T    WAAL+E+IA
Sbjct: 539 RIAERIMLAAYEASATLAERSGPLPAWEKTRTARGVLHPDHFGVEFTWPERWAALRERIA 598

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L++DL +LG
Sbjct: 599 STGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKDLG 658

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  ++DQ+QSLN
Sbjct: 659 VWDARTREALREANGSVQDFGWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLN 718

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A     A++ 
Sbjct: 719 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA-----AQAS 762

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +QA  +    A+ C  +N E C   Q
Sbjct: 763 VPVQATPDP--DAVACSLENPESCEACQ 788



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/225 (42%), Positives = 135/225 (60%), Gaps = 18/225 (8%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV  T    WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 578 DHFGVEFTWPERWAALRERIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 637

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L++DL +LG+WD   ++ L   NGS+QD   IP  ++ LY+T WEIPQ
Sbjct: 638 TLSGEFLQVNSYLVQDLKDLGVWDARTREALREANGSVQDFGWIPADVRALYRTAWEIPQ 697

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 698 RGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA---- 752

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A       +Q  +         A+ C  +N E C
Sbjct: 753 ------TRIARA-------AQASVPVQATPDPDAVACSLENPESC 784



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA+WSL  
Sbjct: 299 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADAEWSLFS 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WG++FD  Y+  EA+GL 
Sbjct: 359 PSDVPELVDLWGDEFDAAYRAAEAKGLA 386



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++R+PFD  E++ L+ +I E I   A EAS  +A R GP   +E +  +
Sbjct: 512 LGAMGLQDVFFKLRIPFDSPEAKELSTRIAERIMLAAYEASATLAERSGPLPAWEKTRTA 571

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV  T    WAAL+      GL+
Sbjct: 572 RGVLHPDHFGVEFTWPERWAALRERIASTGLR 603


>gi|383315472|ref|YP_005376314.1| ribonucleoside-diphosphate reductase subunit alpha [Frateuria
           aurantia DSM 6220]
 gi|379042576|gb|AFC84632.1| ribonucleoside-diphosphate reductase, alpha subunit [Frateuria
           aurantia DSM 6220]
          Length = 816

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/464 (45%), Positives = 298/464 (64%), Gaps = 6/464 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG  E R  +L    W+PDEFMRRVE+D  WSL  
Sbjct: 317 RKGAACVYLETWHADIEEFLELRDNTGDHERRTHNLNLANWVPDEFMRRVETDGNWSLFD 376

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P       D+WGE F+  Y+K EAEG  ++ V AR L+  +L +  +TG  +M +KD  N
Sbjct: 377 PKIVPHFVDTWGETFEAAYRKAEAEGLAVKTVKARDLYARMLRTLAQTGNGWMTFKDRAN 436

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +    I  SNLCTEI+E T+  E AVCNL S+ L+ ++   D  +NF +L   
Sbjct: 437 ATSNQTARPENVIHLSNLCTEILEVTNAQETAVCNLGSVNLSRHVQ--DGVFNFEQLGTT 494

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + LN++ID+NFYP++ A  +N + RP+G+G+ GL D+F ++RL FD  E+  L+ 
Sbjct: 495 VRTAVRQLNRVIDLNFYPIDTAAVANRKWRPVGLGLMGLQDVFFKLRLAFDSPEALDLSS 554

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKEKI 387
           +I E IYY AL  SCEIA +DG +  +  +  + G LQ+D W   +  D   W AL+EKI
Sbjct: 555 RISEEIYYHALAQSCEIAEQDGAHPGFPETRAANGELQFDYWPKASQADTARWDALREKI 614

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
            +HG+RNSLLIA  PTA+ A I G  E  EP  SN++ R  LSG+F VVN +L  +L  L
Sbjct: 615 KQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLVVNRYLSNELKAL 674

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW   ++DQ+ +  GSIQ I  IP++L+ +Y+T WE+PQK ++++AA R A+IDQSQSL
Sbjct: 675 GLWTAEIRDQIKLAEGSIQGIMAIPERLRLIYRTTWELPQKALIELAAARSAYIDQSQSL 734

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           N++M   N  ++SSM+ + WK GLKT  YYLR++PA    + T+
Sbjct: 735 NLFMENPNIGQLSSMYMYAWKSGLKT-TYYLRSRPATKIAKTTV 777



 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 90/188 (47%), Positives = 127/188 (67%), Gaps = 2/188 (1%)

Query: 769 FKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
            ++D W   +  D   W AL+EKI +HG+RNSLLIA  PTA+ A I G  E  EP  SN+
Sbjct: 591 LQFDYWPKASQADTARWDALREKIKQHGLRNSLLIAIAPTATIASIAGCYECIEPQVSNL 650

Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
           + R  LSG+F VVN +L  +L  LGLW   ++DQ+ +  GSIQ I  IP++L+ +Y+T W
Sbjct: 651 FKRETLSGDFLVVNRYLSNELKALGLWTAEIRDQIKLAEGSIQGIMAIPERLRLIYRTTW 710

Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           E+PQK ++++AA R A+IDQSQSLN++M   N  ++SSM+ + WK GLKT  YYLR++PA
Sbjct: 711 ELPQKALIELAAARSAYIDQSQSLNLFMENPNIGQLSSMYMYAWKSGLKT-TYYLRSRPA 769

Query: 948 ANAIQFTI 955
               + T+
Sbjct: 770 TKIAKTTV 777



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 56/88 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG  E R  +L    W+PDEFMRRVE+D  WSL  
Sbjct: 317 RKGAACVYLETWHADIEEFLELRDNTGDHERRTHNLNLANWVPDEFMRRVETDGNWSLFD 376

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P       D+WGE F+  Y+K EAEGL 
Sbjct: 377 PKIVPHFVDTWGETFEAAYRKAEAEGLA 404



 Score = 68.6 bits (166), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A +  R  +   +G+ GL D+F ++RL FD  E+  L+ +I E IYY AL  SCEIA +D
Sbjct: 516 AAVANRKWRPVGLGLMGLQDVFFKLRLAFDSPEALDLSSRISEEIYYHALAQSCEIAEQD 575

Query: 641 GPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           G +  +  +  + G LQ+D W   +  D   W AL+     +GL+
Sbjct: 576 GAHPGFPETRAANGELQFDYWPKASQADTARWDALREKIKQHGLR 620


>gi|383650824|ref|ZP_09961230.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           chartreusis NRRL 12338]
          Length = 785

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 314/508 (61%), Gaps = 20/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 356 PSDVPELVDLWGEEFDAAYRAAEAKGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAAN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L   ++ +    ++ +L + 
Sbjct: 416 RTANQTAEPGHVVHSSNLCTEILEVTGDGETAVCNLGSVNLGALVDRSGGDIDWERLDET 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+GV GL D+F ++RLPFD  E++ L+ 
Sbjct: 476 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGVMGLQDVFFKLRLPFDSPEAKRLST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  ++G+L  D + V PT    WAAL+E++A
Sbjct: 536 RIAERIMLAAYEASADLAERNGPLPAWEKTRTAKGVLHPDHYDVQPTWPERWAALRERVA 595

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 596 ATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEELKRLG 655

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
            WD   ++ L   NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 656 AWDARTREALREANGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 715

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A     A++ 
Sbjct: 716 LFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA-----AQAT 759

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +QA  +    A+ C  +N E C   Q
Sbjct: 760 VPVQATPDP--EAVACSLENPESCEACQ 785



 Score =  180 bits (457), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 132/225 (58%), Gaps = 18/225 (8%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D + V PT    WAAL+E++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 575 DHYDVQPTWPERWAALRERVAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 634

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ +L  LG WD   ++ L   NGS+QD   IP  ++ LY+T WEIPQ
Sbjct: 635 TLSGEFLQVNSYLVEELKRLGAWDARTREALREANGSVQDFAWIPADVRALYRTAWEIPQ 694

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  F+DQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 695 RGLIDMAAARTPFLDQSQSLNLFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA---- 749

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A       +Q  +         A+ C  +N E C
Sbjct: 750 ------TRIARA-------AQATVPVQATPDPEAVACSLENPESC 781



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WGE+FD  Y+  EA+GL 
Sbjct: 356 PSDVPELVDLWGEEFDAAYRAAEAKGLA 383



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 509 LGVMGLQDVFFKLRLPFDSPEAKRLSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V PT    WAAL+      G++
Sbjct: 569 KGVLHPDHYDVQPTWPERWAALRERVAATGMR 600


>gi|456388969|gb|EMF54409.1| nrdL protein [Streptomyces bottropensis ATCC 25435]
          Length = 774

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 310/508 (61%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 278 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+F+  Y+K EA G   + + AR L+  ++ +  +TG  +M +KDA N
Sbjct: 338 PADVPELVDLWGEEFEAAYRKAEANGLARKTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 397

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L + 
Sbjct: 398 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDRAAGDMDWQRLDET 457

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 458 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 517

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  ++G+L  D +   P     WAAL+E +A
Sbjct: 518 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHFDARPAWPERWAALREHVA 577

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L++DL ELG
Sbjct: 578 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVKDLKELG 637

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  + GS++D   IP  ++ LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 638 VWDARTREALRESGGSVEDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 697

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A   +  + +
Sbjct: 698 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARAAQGQARQPE 746

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             I   Q  +  A+ C  +N E C   Q
Sbjct: 747 TNIPLQQATSAEAVACSLENPESCEACQ 774



 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 92/213 (43%), Positives = 132/213 (61%), Gaps = 11/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E +A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 569 WAALREHVATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 628

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L++DL ELG+WD   ++ L  + GS++D   IP  ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 629 LVKDLKELGVWDARTREALRESGGSVEDFAWIPADVRALYRTAWEIPQRGLIDMAAARTP 688

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 689 YLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 737

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              +  + +  I   Q  +  A+ C  +N E C
Sbjct: 738 AQGQARQPETNIPLQQATSAEAVACSLENPESC 770



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 278 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+F+  Y+K EA GL 
Sbjct: 338 PADVPELVDLWGEEFEAAYRKAEANGLA 365



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 491 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 550

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +   P     WAAL+      G++
Sbjct: 551 RGVLHPDHFDARPAWPERWAALREHVATTGMR 582


>gi|430741871|ref|YP_007201000.1| ribonucleoside-diphosphate reductase subunit alpha [Singulisphaera
           acidiphila DSM 18658]
 gi|430013591|gb|AGA25305.1| ribonucleoside-diphosphate reductase, alpha subunit [Singulisphaera
           acidiphila DSM 18658]
          Length = 801

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/481 (44%), Positives = 309/481 (64%), Gaps = 8/481 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLELK N G E  R  +L    W+PD FM+RVE+ A WSL  
Sbjct: 318 RKGACCVYLESWHADIEEFLELKDNAGDEARRTYNLNLANWVPDLFMQRVEAGANWSLFD 377

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T   L+D +GE FD  Y + E  G  ++QV AR L+  ++ +  ETG  ++ +KDACN
Sbjct: 378 PKTVPHLTDLFGEAFDVAYAEAEENGLAVKQVAARDLYARMMKTLAETGNGWLNFKDACN 437

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           RKSNQ  +    +  SNLCTEIVE TS  E AVCNL SI L  +++  D  ++F  L + 
Sbjct: 438 RKSNQTRVPGNVVHSSNLCTEIVEVTSAGETAVCNLGSINLVQHVD--DDGFDFEALAET 495

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+ ++D+NFYP  E+  SN R RP+GIG+ GL D+   + LPFD  E+R L+ 
Sbjct: 496 VRTAVPFLDAVVDINFYPTPESATSNRRWRPVGIGLMGLQDVLFHLNLPFDAPEARRLSA 555

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E IY+ AL  SC++A + GP+ ++  +  ++G+LQ D+WG        W+ L+++I 
Sbjct: 556 RIQEEIYFHALSVSCDLAEKLGPHPSFAETRAAEGVLQIDLWGWEGGHDARWSDLRDRIR 615

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSLL+A  PTA+ A I+G  E  EP  SN++ R  LSGEF  VN +L+++L   G
Sbjct: 616 RHGLRNSLLVAIAPTATIASIVGAYECIEPQISNLFKRETLSGEFLQVNRYLVKELKARG 675

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW + +++++ +  GSIQ IE IP +L+ +Y+TVWE+P ++++DMAADR  FIDQSQSLN
Sbjct: 676 LWTEEIRNRIKLAEGSIQGIEEIPAELRRVYRTVWEVPMRSLIDMAADRAPFIDQSQSLN 735

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++   +  K+SSM+ + WK GLKT  YYLR++PA    + T+    ++  M S+ A S 
Sbjct: 736 LFIESPSIGKLSSMYMYAWKRGLKTS-YYLRSRPATGIAKTTV---SLSPGMPSQVACSL 791

Query: 569 E 569
           E
Sbjct: 792 E 792



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/187 (45%), Positives = 129/187 (68%), Gaps = 1/187 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + D+WG        W+ L+++I +HG+RNSLL+A  PTA+ A I+G  E  EP  SN++
Sbjct: 592 LQIDLWGWEGGHDARWSDLRDRIRRHGLRNSLLVAIAPTATIASIVGAYECIEPQISNLF 651

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+++L   GLW + +++++ +  GSIQ IE IP +L+ +Y+TVWE
Sbjct: 652 KRETLSGEFLQVNRYLVKELKARGLWTEEIRNRIKLAEGSIQGIEEIPAELRRVYRTVWE 711

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P ++++DMAADR  FIDQSQSLN+++   +  K+SSM+ + WK GLKT  YYLR++PA 
Sbjct: 712 VPMRSLIDMAADRAPFIDQSQSLNLFIESPSIGKLSSMYMYAWKRGLKTS-YYLRSRPAT 770

Query: 949 NAIQFTI 955
              + T+
Sbjct: 771 GIAKTTV 777



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/98 (45%), Positives = 56/98 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLELK N G E  R  +L    W+PD FM+RVE+ A WSL  
Sbjct: 318 RKGACCVYLESWHADIEEFLELKDNAGDEARRTYNLNLANWVPDLFMQRVEAGANWSLFD 377

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P     L+D +GE FD  Y + E  GL   +  A  +Y
Sbjct: 378 PKTVPHLTDLFGEAFDVAYAEAEENGLAVKQVAARDLY 415



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IG+ GL D+   + LPFD  E+R L+ +I E IY+ AL  SC++A + GP+ ++  +  +
Sbjct: 529 IGLMGLQDVLFHLNLPFDAPEARRLSARIQEEIYFHALSVSCDLAEKLGPHPSFAETRAA 588

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+LQ D+WG        W+ L+     +GL+
Sbjct: 589 EGVLQIDLWGWEGGHDARWSDLRDRIRRHGLR 620


>gi|443290855|ref|ZP_21029949.1| Ribonucleoside-diphosphate reductase large chain [Micromonospora
           lupini str. Lupac 08]
 gi|385886410|emb|CCH18023.1| Ribonucleoside-diphosphate reductase large chain [Micromonospora
           lupini str. Lupac 08]
          Length = 797

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/509 (42%), Positives = 313/509 (61%), Gaps = 20/509 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FL+L+ NTG++  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 306 RKGAACVYLEPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADEVWSLFD 365

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y+  EA+G+++RQ+PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 366 PDEVPELPDLWGERFDAAYRAAEAQGRYVRQLPARELYGKMMRTLAQTGNGWMTFKDAAN 425

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R  NQ  +    +  SNLCTEIVE +S  E AVCNL S+  N+  +  D   ++ +L+  
Sbjct: 426 RLCNQTAEPGNVVHLSNLCTEIVEVSSDAETAVCNLGSV--NVAAHLTDDGIDWPRLRAT 483

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP  +A  SN R RP+G+G+ GL D+F  +RLPFD   +R L+ 
Sbjct: 484 VRTAVTFLDRVIDINYYPTPQAAASNPRWRPVGLGLMGLQDVFFALRLPFDSPAARELST 543

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E +Y  ALE S ++A   G +  Y  +  ++G LQ D+WGV  T    WAAL++++ 
Sbjct: 544 RISEELYLTALETSADLARDFGAHPAYAQTRAARGQLQPDLWGVDGTQTARWAALRQRVG 603

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            +G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN  L+R+L   G
Sbjct: 604 AYGLRNSLLVAVAPTATIASIAGCYECVEPQVSNLFKRETLSGEFLQVNTALVRELKARG 663

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW + ++  +    GS+QD+  +P  +++L++T WE+PQ+ ++D+AA R  FIDQSQSLN
Sbjct: 664 LWTEQIRSAIRRAEGSVQDVTELPADVRELFRTAWELPQRALIDLAAARAPFIDQSQSLN 723

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK-TKMANAMASKDARS 567
           +++A     K+SSM+ + WK GLKT  YYLR++PA    Q T+   T +A    + DA  
Sbjct: 724 LFLASPTIGKLSSMYLYAWKTGLKT-TYYLRSRPATRIQQATVSAVTPVAVGPVAVDAE- 781

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                        A+ C  +N E C   Q
Sbjct: 782 -------------ALACSLENPESCEACQ 797



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 136/229 (59%), Gaps = 16/229 (6%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            + D+WGV  T    WAAL++++  +G+RNSLL+A  PTA+ A I G  E  EP  SN++
Sbjct: 580 LQPDLWGVDGTQTARWAALRQRVGAYGLRNSLLVAVAPTATIASIAGCYECVEPQVSNLF 639

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN  L+R+L   GLW + ++  +    GS+QD+  +P  +++L++T WE
Sbjct: 640 KRETLSGEFLQVNTALVRELKARGLWTEQIRSAIRRAEGSVQDVTELPADVRELFRTAWE 699

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQ+ ++D+AA R  FIDQSQSLN+++A     K+SSM+ + WK GLKT  YYLR++PA 
Sbjct: 700 LPQRALIDLAAARAPFIDQSQSLNLFLASPTIGKLSSMYLYAWKTGLKT-TYYLRSRPAT 758

Query: 949 NAIQFTIDK-TKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              Q T+   T +A    + D                A+ C  +N E C
Sbjct: 759 RIQQATVSAVTPVAVGPVAVDAE--------------ALACSLENPESC 793



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 58/86 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FL+L+ NTG++  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 306 RKGAACVYLEPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADEVWSLFD 365

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D WGE+FD  Y+  EA+G
Sbjct: 366 PDEVPELPDLWGERFDAAYRAAEAQG 391



 Score = 73.9 bits (180), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F  +RLPFD   +R L+ +I E +Y  ALE S ++A   G +  Y  +  +
Sbjct: 517 LGLMGLQDVFFALRLPFDSPAARELSTRISEELYLTALETSADLARDFGAHPAYAQTRAA 576

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ D+WGV  T    WAAL+     YGL+
Sbjct: 577 RGQLQPDLWGVDGTQTARWAALRQRVGAYGLR 608


>gi|398782656|ref|ZP_10546370.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           auratus AGR0001]
 gi|396996720|gb|EJJ07706.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           auratus AGR0001]
          Length = 800

 Score =  431 bits (1108), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/513 (43%), Positives = 318/513 (61%), Gaps = 20/513 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 301 RKGAACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y++ EAEG+ ++Q+PAR L+  ++ +  +TG  +M +KD  N
Sbjct: 361 PSDAPELVDLWGEQFDAAYRRAEAEGRAVKQIPARVLYSRMMRTLAQTGNGWMTFKDTAN 420

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPA---DKTYNFTK 264
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  ++ N A   ++  ++ +
Sbjct: 421 RTANQTAEPGQVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLGNDAGGWEEAMDWER 480

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L    +     L++++D+NFYP E+A  SN R RP+G+G+ GL D+F ++RLPFD  E++
Sbjct: 481 LDATVRTAVTFLDRVVDINFYPTEQAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAQ 540

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAAL 383
            L+ +I E I   A EAS ++A R GP+  +  +  ++G+L  D +    P     WAAL
Sbjct: 541 ELSTRISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPDHYPNAEPRWADRWAAL 600

Query: 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           + +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +
Sbjct: 601 RSRIALTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLIEE 660

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
           L  LGLWD   +D L   NGS+QD+  IP++++ LY+T WEIPQ+ ++DMAA R  ++DQ
Sbjct: 661 LKALGLWDARTRDALREANGSVQDVAWIPEEIRALYRTAWEIPQRALIDMAAARTPYLDQ 720

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           SQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA       I ++    A AS 
Sbjct: 721 SQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATR-----IAQSARGTAAASA 774

Query: 564 DARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               Q    AD E    A+ C  +N E C   Q
Sbjct: 775 PVPQQ---AADPE----AVACSLENPESCEACQ 800



 Score =  186 bits (472), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 133/213 (62%), Gaps = 13/213 (6%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 597 WAALRSRIALTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 656

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LGLWD   +D L   NGS+QD+  IP++++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 657 LIEELKALGLWDARTRDALREANGSVQDVAWIPEEIRALYRTAWEIPQRALIDMAAARTP 716

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA       I ++    A
Sbjct: 717 YLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATR-----IAQSARGTA 770

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            AS     Q    AD E    A+ C  +N E C
Sbjct: 771 AASAPVPQQ---AADPE----AVACSLENPESC 796



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 301 RKGAACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D WGE+FD  Y++ EAEG
Sbjct: 361 PSDAPELVDLWGEQFDAAYRRAEAEG 386



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R GP+  +  +  +
Sbjct: 518 LGLMGLQDVFFRLRLPFDSPEAQELSTRISERIMLAAYEASADLAERHGPHPAWSATRTA 577

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +    P     WAAL+    + G++
Sbjct: 578 RGVLHPDHYPNAEPRWADRWAALRSRIALTGMR 610


>gi|429196117|ref|ZP_19188103.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           ipomoeae 91-03]
 gi|428668195|gb|EKX67232.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           ipomoeae 91-03]
          Length = 806

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 311/508 (61%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D +WSL  
Sbjct: 312 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADERWSLFS 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+K EA+G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 372 PADVPELVDLWGEEFDAAYRKAEADGLAKKTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 431

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L + 
Sbjct: 432 RTANQTAEAGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQATGDLDWERLDET 491

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 492 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAKALST 551

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A RDGP   +E +  ++G+L  D +GV  T    WAAL+E+IA
Sbjct: 552 RIAERIMLAAYETSTDLAERDGPLPAWEKTRTARGVLHPDHYGVEFTWPERWAALRERIA 611

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L++DL  LG
Sbjct: 612 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKALG 671

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 672 VWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 731

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA    +     +  A  +        
Sbjct: 732 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIARAAGSSSAAATPV-------- 782

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +QA  + A+A   C  +N E C   Q
Sbjct: 783 -PVQATADDAVA---CSLENPESCEACQ 806



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/225 (43%), Positives = 136/225 (60%), Gaps = 13/225 (5%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV  T    WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 591 DHYGVEFTWPERWAALRERIATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 650

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L++DL  LG+WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ
Sbjct: 651 TLSGEFLQVNSYLVQDLKALGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQ 710

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 711 RGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIA 769

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           +     +  A  +          +QA  + A+A   C  +N E C
Sbjct: 770 RAAGSSSAAATPV---------PVQATADDAVA---CSLENPESC 802



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D +WSL  
Sbjct: 312 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADERWSLFS 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y+K EA+GL 
Sbjct: 372 PADVPELVDLWGEEFDAAYRKAEADGLA 399



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A E S ++A RDGP   +E +  +
Sbjct: 525 LGAMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYETSTDLAERDGPLPAWEKTRTA 584

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV  T    WAAL+      G++
Sbjct: 585 RGVLHPDHYGVEFTWPERWAALRERIATTGMR 616


>gi|302554046|ref|ZP_07306388.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471664|gb|EFL34757.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 793

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 312/508 (61%), Gaps = 20/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    W+PDEFMRRV +DAQWSL  
Sbjct: 304 RKGAAAVYLETWHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFS 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 364 PSDVPELVDLWGEEFDTAYRAAEAKGLAKRTLPARELYGRMMRTLAQTGNGWMTFKDAAN 423

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E TS  E AVCNL S+ L  +++ +    ++ +L   
Sbjct: 424 RTANQTAEPGHVVHSSNLCTEILEVTSDGETAVCNLGSVNLGAFVDTSTGDLDWDRLDAT 483

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 484 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFKLRLPFDSPEAKALST 543

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R GP   +E +  ++G+L  D + V  T    WAAL+E+IA
Sbjct: 544 RIAERIMLAAYEASADLAERSGPLPAWEKTRTARGVLHPDHYDVELTWPERWAALRERIA 603

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 604 ATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKRLG 663

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 664 VWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 723

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A       +Q
Sbjct: 724 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA-------AQ 765

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             + A       A+ C  +N E C   Q
Sbjct: 766 ATVPAQATPDPEAVACSLENPESCEACQ 793



 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 130/213 (61%), Gaps = 18/213 (8%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 595 WAALRERIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 654

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LG+WD   ++ L   +GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 655 LVDELKRLGVWDARSREALREASGSVQDFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 714

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 715 FLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 763

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                  +Q  + A       A+ C  +N E C
Sbjct: 764 -------AQATVPAQATPDPEAVACSLENPESC 789



 Score =  106 bits (264), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    W+PDEFMRRV +DAQWSL  
Sbjct: 304 RKGAAAVYLETWHSDVEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADAQWSLFS 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WGE+FD  Y+  EA+GL 
Sbjct: 364 PSDVPELVDLWGEEFDTAYRAAEAKGLA 391



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R GP   +E +  +
Sbjct: 517 LGAMGLQDVFFKLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERSGPLPAWEKTRTA 576

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    WAAL+      G++
Sbjct: 577 RGVLHPDHYDVELTWPERWAALRERIAATGMR 608


>gi|418471849|ref|ZP_13041639.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicoflavus ZG0656]
 gi|371547526|gb|EHN75896.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicoflavus ZG0656]
          Length = 791

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 307/508 (60%), Gaps = 18/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDTDGTWSLFS 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+FD  Y++ E  G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L  +++PA    ++ +L   
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAQGDMDWERLDAT 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A RDGP   +E +  +QG+L  D +GV P     W AL+ ++A
Sbjct: 540 RIAERIMLAAYETSADLAERDGPLPAWEKTRTAQGVLHPDHYGVEPAWPERWTALRARMA 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 600 TTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  ++DQ+QSLN
Sbjct: 660 VWDARTREALREANGSVQGFSWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A A +     
Sbjct: 720 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA-AGRATAVP 767

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +   D E    A+ C  +N E C   Q
Sbjct: 768 VQAAPDPE----AVACSLENPESCEACQ 791



 Score =  176 bits (445), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 134/225 (59%), Gaps = 16/225 (7%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV P     W AL+ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 579 DHYGVEPAWPERWTALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 638

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ DL  LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ
Sbjct: 639 TLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFSWIPEDVRALYRTAWEIPQ 698

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 699 RGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA---- 753

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A A + T    +   D E    A+ C  +N E C
Sbjct: 754 ------TRIARA-AGRATAVPVQAAPDPE----AVACSLENPESC 787



 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDTDGTWSLFS 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+FD  Y++ E  GL 
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLA 387



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E S ++A RDGP   +E +  +
Sbjct: 513 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERDGPLPAWEKTRTA 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+L  D +GV P     W AL+      GL+
Sbjct: 573 QGVLHPDHYGVEPAWPERWTALRARMATTGLR 604


>gi|345009209|ref|YP_004811563.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           violaceusniger Tu 4113]
 gi|344035558|gb|AEM81283.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 804

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/511 (43%), Positives = 317/511 (62%), Gaps = 14/511 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 303 RKGAACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+K EAEG+ ++QVPAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 363 PVDAPALVDLWGDEFDAAYRKAEAEGRAVKQVPARQLYARMMRTLAQTGNGWMTFKDAAN 422

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  +++  D   ++ +L   
Sbjct: 423 RTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLAAHLD-EDGQVDWERLDAT 481

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
                  L++++D+NFYP +EA  SN R RP+G+G+ GL D+F ++RLPFD  E++ L+ 
Sbjct: 482 VHTAVTFLDRVVDINFYPTDEAGASNSRWRPVGLGLMGLQDVFFRLRLPFDSPEAKALST 541

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD--WAALKEK 386
           +I E I   A EASCE+A R GP+  +  +  ++G+L  D +       W   W AL+ +
Sbjct: 542 RISERIMLAAYEASCELAERHGPHPAWSETRTARGVLHPDHY-TDAVATWPERWEALRTR 600

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +
Sbjct: 601 MAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKK 660

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD + ++ L  +NGS+Q+   +P  ++DLY+T WEIPQ+ +++MAA R  ++DQSQS
Sbjct: 661 LGVWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTPYLDQSQS 720

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN++MA     K+SSM+ + WK G+KT  YYLR++PA    Q        A A A     
Sbjct: 721 LNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPATRIAQSARGGGAAATAPAPALIP 779

Query: 567 SQEE-IQADQEQAMAAMICRRDNKEDCIGVQ 596
            Q+   +AD      A+ C  +N E C   Q
Sbjct: 780 VQQAPAEAD------AIACSLENPESCEACQ 804



 Score =  176 bits (445), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 117/164 (71%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 594 WEALRTRMAKSGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 653

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD + ++ L  +NGS+Q+   +P  ++DLY+T WEIPQ+ +++MAA R  
Sbjct: 654 LVDDLKKLGVWDAHTREALRESNGSVQEFSWVPADVRDLYRTAWEIPQRALIEMAAARTP 713

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA
Sbjct: 714 YLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPA 756



 Score =  105 bits (263), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 58/86 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 303 RKGAACVYLETWHADLEEFLELRDNTGEEARRTHNLNIAHWIPDEFMRRVEADADWSLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D WG++FD  Y+K EAEG
Sbjct: 363 PVDAPALVDLWGDEFDAAYRKAEAEG 388



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RLPFD  E++ L+ +I E I   A EASCE+A R GP+  +  +  +
Sbjct: 515 LGLMGLQDVFFRLRLPFDSPEAKALSTRISERIMLAAYEASCELAERHGPHPAWSETRTA 574

Query: 653 QGILQYDMW 661
           +G+L  D +
Sbjct: 575 RGVLHPDHY 583


>gi|440698861|ref|ZP_20881183.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           turgidiscabies Car8]
 gi|440278673|gb|ELP66667.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           turgidiscabies Car8]
          Length = 788

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 311/508 (61%), Gaps = 20/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV+SDA WSL  
Sbjct: 299 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDSDALWSLFS 358

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG +FD  Y+  E  G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 359 PSDVPELVDLWGAEFDAAYRAAEEAGLARKTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 418

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L + 
Sbjct: 419 RTANQTAEPGSVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDET 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+R+PFD  E+R L+ 
Sbjct: 479 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLRVPFDSPEARALST 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E +   A EAS ++A R+GP   +E +  ++G+L  D + V       W+AL+E+IA
Sbjct: 539 RIAERVMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYDVELNWPERWSALRERIA 598

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+R+L +LG
Sbjct: 599 EVGMRNSLLLAVAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVRELKDLG 658

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 659 VWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 718

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A       +Q
Sbjct: 719 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA-------AQ 760

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +   Q     A+ C  +N E C   Q
Sbjct: 761 ATVPVQQAADPDAVACSLENPESCEACQ 788



 Score =  182 bits (463), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 133/213 (62%), Gaps = 18/213 (8%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W+AL+E+IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 590 WSALRERIAEVGMRNSLLLAVAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 649

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+R+L +LG+WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 650 LVRELKDLGVWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTP 709

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 710 FLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 758

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                  +Q  +   Q     A+ C  +N E C
Sbjct: 759 -------AQATVPVQQAADPDAVACSLENPESC 784



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV+SDA WSL  
Sbjct: 299 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDSDALWSLFS 358

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WG +FD  Y+  E  GL 
Sbjct: 359 PSDVPELVDLWGAEFDAAYRAAEEAGLA 386



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 50/83 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+R+PFD  E+R L+ +I E +   A EAS ++A R+GP   +E +  +
Sbjct: 512 LGAMGLQDVFFQLRVPFDSPEARALSTRIAERVMLAAYEASADLAERNGPLPAWEKTRTA 571

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G+L  D + V       W+AL+
Sbjct: 572 RGVLHPDHYDVELNWPERWSALR 594


>gi|408826316|ref|ZP_11211206.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           somaliensis DSM 40738]
          Length = 784

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 310/508 (61%), Gaps = 19/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA+WSL  
Sbjct: 294 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVSDDAEWSLFS 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y+  EA G   R +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 354 PSDVPELVDLWGEEFDAAYRAAEARGLARRTMPARDLYGRMMRTLAQTGNGWMTFKDAAN 413

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +   T+  SNLCTEI+E T   E AVCNL S+ L  ++       ++ +L + 
Sbjct: 414 RTANQTAEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVT--GGGMDWERLDET 471

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP EEA  SN R RP+G+GV GL D+F ++RLPFD  E+R L+ 
Sbjct: 472 VRTAVTFLDRVVDINFYPTEEAARSNTRWRPVGLGVMGLQDVFFKLRLPFDSPEARALST 531

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A  AS ++A R GP   ++ +  ++G+L  D + V P     WAAL+E+IA
Sbjct: 532 RIAERIMLAAYGASADLAERSGPLPAWDKTRTARGVLHPDHYDVEPAWPERWAALRERIA 591

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL ELG
Sbjct: 592 SVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKELG 651

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    +P ++++LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 652 VWDAQTREALREANGSVQGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 711

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A ++    + 
Sbjct: 712 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAASA----AT 756

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +   Q     A+ C  +N E C   Q
Sbjct: 757 VPVPVQQVSEPDAVACSLENPESCEACQ 784



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/225 (44%), Positives = 137/225 (60%), Gaps = 15/225 (6%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D + V P     WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 571 DHYDVEPAWPERWAALRERIASVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 630

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ DL ELG+WD   ++ L   NGS+Q    +P ++++LY+T WEIPQ
Sbjct: 631 TLSGEFLQVNSYLVDDLKELGVWDAQTREALREANGSVQGFTWVPAEVRELYRTAWEIPQ 690

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 691 RGLIDMAAARTPFLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA---- 745

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A AS  T      Q  +  A+A   C  +N E C
Sbjct: 746 ------TRIARA-ASAATVPVPVQQVSEPDAVA---CSLENPESC 780



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA+WSL  
Sbjct: 294 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVSDDAEWSLFS 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WGE+FD  Y+  EA GL 
Sbjct: 354 PSDVPELVDLWGEEFDAAYRAAEARGLA 381



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+R L+ +I E I   A  AS ++A R GP   ++ +  +
Sbjct: 505 LGVMGLQDVFFKLRLPFDSPEARALSTRIAERIMLAAYGASADLAERSGPLPAWDKTRTA 564

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V P     WAAL+      GL+
Sbjct: 565 RGVLHPDHYDVEPAWPERWAALRERIASVGLR 596


>gi|359149119|ref|ZP_09182183.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. S4]
          Length = 791

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/511 (42%), Positives = 315/511 (61%), Gaps = 22/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L+D WG+ FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEAQGLARRTIPARELYGRMMRTLAQTGNGWMTFKDASN 417

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  +++      ++ +L + 
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVD--GGAIDWERLDEA 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 476 VRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WD--WAALKE 385
           +I E I   A E SC++A ++GP   ++ +  +QG+L  D +    TDL W   W AL+ 
Sbjct: 536 RIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHYD---TDLAWPERWEALRA 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL 
Sbjct: 593 RVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLK 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  F+DQSQ
Sbjct: 653 RLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTPFLDQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A A   A
Sbjct: 713 SLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPA----------TRIARA-AGGSA 760

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +   + A       A+ C  +N E C   Q
Sbjct: 761 PATATVPAQAAPDAEAIACSLENPESCEACQ 791



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 587 WEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 646

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  
Sbjct: 647 LVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTP 706

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA       I +    +A
Sbjct: 707 FLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPATR-----IARAAGGSA 760

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A+    +Q    A+      A+ C  +N E C
Sbjct: 761 PATATVPAQAAPDAE------AIACSLENPESC 787



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L+D WG+ FD  Y+  EA+GL 
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEAQGLA 385



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E SC++A ++GP   ++ +  +
Sbjct: 509 LGAMGLQDVFFQLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTA 568

Query: 653 QGILQYDMWGVTPTDL-WD--WAALKVLALVYGLK 684
           QG+L  D +    TDL W   W AL+      G++
Sbjct: 569 QGVLHPDHYD---TDLAWPERWEALRARVAESGMR 600


>gi|421744324|ref|ZP_16182312.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SM8]
 gi|406687276|gb|EKC91309.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SM8]
          Length = 791

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/511 (42%), Positives = 314/511 (61%), Gaps = 22/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L+D WG+ FD  Y+  EA G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEARGLARRTIPARELYGRMMRTLAQTGNGWMTFKDASN 417

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  +++      ++ +L + 
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVD--GGAIDWERLDEA 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 476 VRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WD--WAALKE 385
           +I E I   A E SC++A ++GP   ++ +  +QG+L  D +    TDL W   W AL+ 
Sbjct: 536 RIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHYD---TDLAWPERWEALRA 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL 
Sbjct: 593 RVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLK 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  F+DQSQ
Sbjct: 653 RLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTPFLDQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A A   A
Sbjct: 713 SLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPA----------TRIARA-AGGSA 760

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +   + A       A+ C  +N E C   Q
Sbjct: 761 PATATVPAQAAPDAEAIACSLENPESCEACQ 791



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 587 WEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 646

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  
Sbjct: 647 LVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTP 706

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA       I +    +A
Sbjct: 707 FLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPATR-----IARAAGGSA 760

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A+    +Q    A+      A+ C  +N E C
Sbjct: 761 PATATVPAQAAPDAE------AIACSLENPESC 787



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L+D WG+ FD  Y+  EA GL 
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEARGLA 385



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E SC++A ++GP   ++ +  +
Sbjct: 509 LGAMGLQDVFFQLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTA 568

Query: 653 QGILQYDMWGVTPTDL-WD--WAALKVLALVYGLK 684
           QG+L  D +    TDL W   W AL+      G++
Sbjct: 569 QGVLHPDHYD---TDLAWPERWEALRARVAESGMR 600


>gi|256825984|ref|YP_003149944.1| ribonucleoside-diphosphate reductase subunit alpha [Kytococcus
           sedentarius DSM 20547]
 gi|256689377|gb|ACV07179.1| ribonucleoside-diphosphate reductase, alpha subunit [Kytococcus
           sedentarius DSM 20547]
          Length = 875

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/490 (43%), Positives = 300/490 (61%), Gaps = 30/490 (6%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  IYLEPWH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D QWSL+ 
Sbjct: 325 RKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADGQWSLID 384

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG  FD  Y+  E  G  +R V AR L+  ++ +  +TG  +M +KDA N
Sbjct: 385 PDAVPELPDLWGPAFDAAYRAAEERGDVVRTVSARYLYGRMMRTLAQTGQGWMTFKDASN 444

Query: 211 RKSNQ---------------QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY--- 252
           R  NQ               Q    +  SNLCTEI+E TS DE AVCNL S+ L  +   
Sbjct: 445 RACNQTSDDQTPRVAADGTVQPAPVVHLSNLCTEIIEVTSNDETAVCNLGSVNLAAHLQW 504

Query: 253 ------INPADKTYNFT-----KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG 301
                 + P D     T     +L+   ++    L+++ID+N+YP E+A  SN R RPIG
Sbjct: 505 SDGTTGVRPTDPAARATGIDTDRLRSTVRLAVTYLDRVIDINYYPSEQAAASNPRWRPIG 564

Query: 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 361
           +G  GL D+F  +R+PFD  E++ L+ +I E I   ALE S E+A + G +  +  +  +
Sbjct: 565 LGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQLSALERSAELAEQFGAHPAFAETRAA 624

Query: 362 QGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 421
           +G LQ+D+ GV PT    WAA++++IA HG+RNSL+IA  PTA+ A I G  E  EP  S
Sbjct: 625 RGQLQHDLQGVEPTQTERWAAVRQRIADHGLRNSLMIAIAPTATIASIAGCYECIEPQVS 684

Query: 422 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 481
           N++ R  LSGEF  VN  L+ +L  LGLW + ++++L  +NGS+  I  +P++ + L++T
Sbjct: 685 NLFKRETLSGEFMQVNTALVGELKSLGLWTEAVREKLKADNGSVAGIADLPEETRRLFRT 744

Query: 482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
            WE+PQK +++MAA R A++DQSQSLN++M   N  K+SSM+ + WK GLKT  YYLR++
Sbjct: 745 AWELPQKALIEMAAARQAYVDQSQSLNLFMESPNIGKLSSMYLYAWKAGLKT-TYYLRSR 803

Query: 542 PAANAIQFTI 551
           PA    Q T+
Sbjct: 804 PATRIQQATV 813



 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/187 (47%), Positives = 129/187 (68%), Gaps = 1/187 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+ GV PT    WAA++++IA HG+RNSL+IA  PTA+ A I G  E  EP  SN++
Sbjct: 628 LQHDLQGVEPTQTERWAAVRQRIADHGLRNSLMIAIAPTATIASIAGCYECIEPQVSNLF 687

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN  L+ +L  LGLW + ++++L  +NGS+  I  +P++ + L++T WE
Sbjct: 688 KRETLSGEFMQVNTALVGELKSLGLWTEAVREKLKADNGSVAGIADLPEETRRLFRTAWE 747

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +PQK +++MAA R A++DQSQSLN++M   N  K+SSM+ + WK GLKT  YYLR++PA 
Sbjct: 748 LPQKALIEMAAARQAYVDQSQSLNLFMESPNIGKLSSMYLYAWKAGLKT-TYYLRSRPAT 806

Query: 949 NAIQFTI 955
              Q T+
Sbjct: 807 RIQQATV 813



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  IYLEPWH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D QWSL+ 
Sbjct: 325 RKGAACIYLEPWHPDVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADGQWSLID 384

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+A   L D WG  FD  Y+  E  G V
Sbjct: 385 PDAVPELPDLWGPAFDAAYRAAEERGDV 412



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F  +R+PFD  E++ L+ +I E I   ALE S E+A + G +  +  +  +
Sbjct: 565 LGSMGLQDVFFALRMPFDAPEAKELSTRIAEEIQLSALERSAELAEQFGAHPAFAETRAA 624

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D+ GV PT    WAA++     +GL+
Sbjct: 625 RGQLQHDLQGVEPTQTERWAAVRQRIADHGLR 656


>gi|443624322|ref|ZP_21108796.1| putative Ribonucleoside-diphosphate reductase [Streptomyces
           viridochromogenes Tue57]
 gi|443342236|gb|ELS56404.1| putative Ribonucleoside-diphosphate reductase [Streptomyces
           viridochromogenes Tue57]
          Length = 776

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 310/508 (61%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 283 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 342

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+K E  G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 343 PADVPELVDLWGEEFDAAYRKAEEAGLARKTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 402

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L    +  SNLCTEI+E T   E AVCNL S+ L  +++PA +  ++ +L   
Sbjct: 403 RTANQTALPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPARQDIDWERLDAT 462

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 463 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKRLST 522

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R GP   +E +  ++G+L  D + V  T    WAAL+ +IA
Sbjct: 523 RIAERIMLAAYEASADLAERGGPLPAWEKTRTARGVLHPDHYDVELTWPERWAALRSRIA 582

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 583 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKALG 642

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 643 VWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 702

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A  ++   + 
Sbjct: 703 LFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAAQAQAQATI 751

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
              Q   E A+A   C  +N E C   Q
Sbjct: 752 PVQQPAPEDAVA---CSLENPESCEACQ 776



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 574 WAALRSRIATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 633

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LG+WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 634 LVDELKALGVWDARTREALRESNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTP 693

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 694 FLDQSQSLNLFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 736



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 283 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 342

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y+K E  GL 
Sbjct: 343 PADVPELVDLWGEEFDAAYRKAEEAGLA 370



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R GP   +E +  +
Sbjct: 496 LGAMGLQDVFFKLRLPFDSAEAKRLSTRIAERIMLAAYEASADLAERGGPLPAWEKTRTA 555

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    WAAL+      G++
Sbjct: 556 RGVLHPDHYDVELTWPERWAALRSRIATTGMR 587


>gi|291454053|ref|ZP_06593443.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
 gi|291357002|gb|EFE83904.1| ribonucleotide-diphosphate reductase subunit large [Streptomyces
           albus J1074]
          Length = 791

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/511 (42%), Positives = 314/511 (61%), Gaps = 22/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L+D WG+ FD  Y+  EA G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEARGLARRTIPARELYGRMMRTLAQTGNGWMTFKDASN 417

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  +++      ++ +L + 
Sbjct: 418 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVD--GGAIDWERLDEA 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 476 VRTAVVFLDRVVDINFYPTEQAERSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEAQRLST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WD--WAALKE 385
           +I E I   A E SC++A ++GP   ++ +  +QG+L  D +    TDL W   W AL+ 
Sbjct: 536 RIAERIMLTAYETSCDLAEKNGPLPNWDRTRTAQGVLHPDHYD---TDLAWPERWEALRA 592

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL 
Sbjct: 593 RVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLK 652

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  F+DQSQ
Sbjct: 653 RLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTPFLDQSQ 712

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A A   A
Sbjct: 713 SLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPA----------TRIARA-AGGSA 760

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +   + A       A+ C  +N E C   Q
Sbjct: 761 PATATVPAQAAPDAEAIACSLENPESCEACQ 791



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 130/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A+ G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 587 WEALRARVAESGMRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 646

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L   +GS+Q    IP++L+ LY+T WE+PQ+ ++DMAA R  
Sbjct: 647 LVEDLKRLGVWDARTREALREASGSVQGFAWIPEELRALYRTAWELPQRGLIDMAAARTP 706

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA       I +    +A
Sbjct: 707 FLDQSQSLNLFMETPTIGKLSSMYAYAWKKGLKT-TYYLRSRPATR-----IARAAGGSA 760

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A+    +Q    A+      A+ C  +N E C
Sbjct: 761 PATATVPAQAAPDAE------AIACSLENPESC 787



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRV++DA WSL  
Sbjct: 298 RKGAAAVYLETWHADVEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVDADADWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L+D WG+ FD  Y+  EA GL 
Sbjct: 358 PSDVPELTDLWGDAFDAAYRAAEARGLA 385



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E SC++A ++GP   ++ +  +
Sbjct: 509 LGAMGLQDVFFQLRLPFDSPEAQRLSTRIAERIMLTAYETSCDLAEKNGPLPNWDRTRTA 568

Query: 653 QGILQYDMWGVTPTDL-WD--WAALKVLALVYGLK 684
           QG+L  D +    TDL W   W AL+      G++
Sbjct: 569 QGVLHPDHYD---TDLAWPERWEALRARVAESGMR 600


>gi|357401661|ref|YP_004913586.1| Ribonucleoside-diphosphate reductase large subunit [Streptomyces
           cattleya NRRL 8057 = DSM 46488]
 gi|386357724|ref|YP_006055970.1| ribonucleoside-diphosphate reductase large subunit [Streptomyces
           cattleya NRRL 8057 = DSM 46488]
 gi|337768070|emb|CCB76783.1| Ribonucleoside-diphosphate reductase large subunit [Streptomyces
           cattleya NRRL 8057 = DSM 46488]
 gi|365808232|gb|AEW96448.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces cattleya NRRL 8057 = DSM 46488]
          Length = 788

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/454 (45%), Positives = 298/454 (65%), Gaps = 4/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DA+WSL  
Sbjct: 296 RKGAACVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAEWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+  EA G+ I++VPAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 356 PADVPELVDLWGEEFDAAYRAAEAAGRQIKRVPARQLYARMMRTLAQTGNGWMTFKDAAN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++  AD + ++ KL   
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLT-ADASVDWEKLDAT 474

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+N+YP E+A  SN R RP+G+GV GL D+F ++RLPFD  E+R L+ 
Sbjct: 475 VRTAVTFLDRVVDINYYPTEQAAASNSRWRPVGLGVMGLQDVFFRLRLPFDSPEARALST 534

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E +   A E SC +A R GP+  +E +  ++G+L  D +   P     W AL+E+I+
Sbjct: 535 RIAERVMLAAYEQSCALAERHGPHPAWERTRAARGVLHPDHFPTEPAWPDRWTALRERIS 594

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 595 RTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVADLKKLG 654

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+QD+  IP  ++ LY+T WE+PQ+ ++DMAADR  ++DQSQSLN
Sbjct: 655 VWDARTREALREANGSVQDLGWIPAGVRALYRTAWELPQRALIDMAADRTPYLDQSQSLN 714

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           ++MA     K+SSM+ + WK GLKT  YYLR++P
Sbjct: 715 LFMAAPTIGKLSSMYAYAWKKGLKT-TYYLRSRP 747



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/163 (50%), Positives = 116/163 (71%), Gaps = 1/163 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+E+I++ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 586 WTALRERISRTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTY 645

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L   NGS+QD+  IP  ++ LY+T WE+PQ+ ++DMAADR  
Sbjct: 646 LVADLKKLGVWDARTREALREANGSVQDLGWIPAGVRALYRTAWELPQRALIDMAADRTP 705

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           ++DQSQSLN++MA     K+SSM+ + WK GLKT  YYLR++P
Sbjct: 706 YLDQSQSLNLFMAAPTIGKLSSMYAYAWKKGLKT-TYYLRSRP 747



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 52/76 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DA+WSL  
Sbjct: 296 RKGAACVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAEWSLFS 355

Query: 61  PNACRGLSDSWGEKFD 76
           P     L D WGE+FD
Sbjct: 356 PADVPELVDLWGEEFD 371



 Score = 69.7 bits (169), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F ++RLPFD  E+R L+ +I E +   A E SC +A R GP+  +E +  +
Sbjct: 508 LGVMGLQDVFFRLRLPFDSPEARALSTRIAERVMLAAYEQSCALAERHGPHPAWERTRAA 567

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +   P     W AL+      GL+
Sbjct: 568 RGVLHPDHFPTEPAWPDRWTALRERISRTGLR 599


>gi|162452148|ref|YP_001614515.1| ribonucleoside-diphosphate reductase [Sorangium cellulosum So ce56]
 gi|161162730|emb|CAN94035.1| Ribonucleoside-diphosphate reductase [Sorangium cellulosum So ce56]
          Length = 838

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/467 (42%), Positives = 299/467 (64%), Gaps = 6/467 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH D+ +FL L+ NTG E  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 328 RKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVPDLFMKRVEADGDWSLFD 387

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P   R L D +GE+F+  Y + E  G   + + AR+L+  ++ +  +TG  +M +KD  N
Sbjct: 388 PKDARDLPDLYGEEFERRYVEAERAGLAKKTMKARELYARMMRTLAQTGNGWMTFKDKSN 447

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY---INPADKTYNFTKL 265
           R  NQ  L    +  SNLCTEI+E TS +E AVCNL SI L  +   +      ++F KL
Sbjct: 448 RACNQTALPGRIVHLSNLCTEILEVTSNEESAVCNLGSINLARHTATLADGAVAFDFEKL 507

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               +   + L+++ID+N+YP+   R SN+R RP+G+G+ GL D+F QMRLPFD   +R 
Sbjct: 508 ARTVRTAVRQLDRVIDLNYYPIPSTRRSNLRWRPVGLGLMGLQDVFFQMRLPFDAPAARE 567

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
           L+++I E +YY AL  S ++AA  G +  ++ +  ++G LQ+D WG  P D   W AL+ 
Sbjct: 568 LSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAARGELQFDAWGAVPEDAARWEALRA 627

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++   G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSG+F  +N +L+ +L 
Sbjct: 628 RVQAEGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGDFLQMNRYLVAELK 687

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
            LG W+D ++ +L +  GS+Q ++ +P++++ +++T WEIP ++++DMAADRGAFIDQSQ
Sbjct: 688 RLGAWNDAVRARLKLAEGSVQGMDELPEQIRAVFRTAWEIPMRSLIDMAADRGAFIDQSQ 747

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           SLN+++      ++SSM+FH WK GLKT  YYLR++PA    + T++
Sbjct: 748 SLNLFIENPTIGQLSSMYFHAWKKGLKT-TYYLRSRPATRIAKATVE 793



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 129/188 (68%), Gaps = 1/188 (0%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D WG  P D   W AL+ ++   G+RNSLL+A  PTA+ A I G  E  EP  SN++
Sbjct: 607 LQFDAWGAVPEDAARWEALRARVQAEGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLF 666

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSG+F  +N +L+ +L  LG W+D ++ +L +  GS+Q ++ +P++++ +++T WE
Sbjct: 667 KRETLSGDFLQMNRYLVAELKRLGAWNDAVRARLKLAEGSVQGMDELPEQIRAVFRTAWE 726

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           IP ++++DMAADRGAFIDQSQSLN+++      ++SSM+FH WK GLKT  YYLR++PA 
Sbjct: 727 IPMRSLIDMAADRGAFIDQSQSLNLFIENPTIGQLSSMYFHAWKKGLKT-TYYLRSRPAT 785

Query: 949 NAIQFTID 956
              + T++
Sbjct: 786 RIAKATVE 793



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 54/88 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH D+ +FL L+ NTG E  R  +L    W+PD FM+RVE+D  WSL  
Sbjct: 328 RKGACCVYLEPWHADVEEFLSLRDNTGDEAARTHNLNLASWVPDLFMKRVEADGDWSLFD 387

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P   R L D +GE+F+  Y + E  GL 
Sbjct: 388 PKDARDLPDLYGEEFERRYVEAERAGLA 415



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 56/92 (60%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F QMRLPFD   +R L+++I E +YY AL  S ++AA  G +  ++ +  +
Sbjct: 544 LGLMGLQDVFFQMRLPFDAPAARELSRRISEEVYYHALSTSADLAAEKGRHPAFDETRAA 603

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G LQ+D WG  P D   W AL+      GL+
Sbjct: 604 RGELQFDAWGAVPEDAARWEALRARVQAEGLR 635


>gi|441155686|ref|ZP_20966845.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           rimosus subsp. rimosus ATCC 10970]
 gi|440617881|gb|ELQ80968.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           rimosus subsp. rimosus ATCC 10970]
          Length = 817

 Score =  424 bits (1091), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/513 (42%), Positives = 315/513 (61%), Gaps = 18/513 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 316 RKGAACVYLETWHADLEEFLELRDNTGEDARRTHNLNIAHWIPDEFMRRVEADADWSLFS 375

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +G++FD  Y+K EA G  ++QVPAR L+  ++ +  +TG  +M +KDA N
Sbjct: 376 PSDVPELVDLYGDEFDTAYRKAEAAGLAVKQVPARILYARMMRTLAQTGNGWMTFKDAAN 435

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI----NPADKTYNFTK 264
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++    N  ++  ++ +
Sbjct: 436 RTANQTAEPGKVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAHLGNEANGWEEAMDWER 495

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L    +     L++++D+NFYP E+A  SN R RP+G+G+ GL D+F ++RL FD  E+R
Sbjct: 496 LDATVRTAVTFLDRVVDINFYPTEQAGASNSRWRPVGLGLMGLQDVFFRLRLGFDSPEAR 555

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPTDLWDWAAL 383
            L+ +I E I   A EAS ++A R GP+  +  +  ++G+L  D +    P     WAAL
Sbjct: 556 ELSTRISERIMLAAYEASADLAERHGPHPAWSATRTARGVLHPDHYPNAEPRWADRWAAL 615

Query: 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
           + +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +
Sbjct: 616 RTRIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLIEE 675

Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
           L  LGLWD+  +D L   NGS+Q+++ IP ++++LY+T WEIPQ+ ++DMAADR  ++DQ
Sbjct: 676 LKALGLWDERTRDALREGNGSVQELDWIPAEIRELYRTAWEIPQRALIDMAADRTPYLDQ 735

Query: 504 SQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASK 563
           SQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA          T++A +    
Sbjct: 736 SQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPA----------TRIAQSARGT 784

Query: 564 DARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
              +Q      Q     A+ C  +N E C   Q
Sbjct: 785 GGGAQPAPVPTQAADPEAVACSLENPESCEACQ 817



 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/213 (44%), Positives = 134/213 (62%), Gaps = 11/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 612 WAALRTRIAATGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 671

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LGLWD+  +D L   NGS+Q+++ IP ++++LY+T WEIPQ+ ++DMAADR  
Sbjct: 672 LIEELKALGLWDERTRDALREGNGSVQELDWIPAEIRELYRTAWEIPQRALIDMAADRTP 731

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQSQSLN++MA     K+SSM+ + WK G+KT  YYLR++PA          T++A +
Sbjct: 732 YLDQSQSLNLFMASPTIGKLSSMYAYAWKRGIKT-TYYLRSRPA----------TRIAQS 780

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                  +Q      Q     A+ C  +N E C
Sbjct: 781 ARGTGGGAQPAPVPTQAADPEAVACSLENPESC 813



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 63/98 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DA WSL  
Sbjct: 316 RKGAACVYLETWHADLEEFLELRDNTGEDARRTHNLNIAHWIPDEFMRRVEADADWSLFS 375

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
           P+    L D +G++FD  Y+K EA GL   +  A  +Y
Sbjct: 376 PSDVPELVDLYGDEFDTAYRKAEAAGLAVKQVPARILY 413



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F ++RL FD  E+R L+ +I E I   A EAS ++A R GP+  +  +  +
Sbjct: 533 LGLMGLQDVFFRLRLGFDSPEARELSTRISERIMLAAYEASADLAERHGPHPAWSATRTA 592

Query: 653 QGILQYDMW-GVTPTDLWDWAALKVLALVYGLK--LWFAILDSQ-----------IETGT 698
           +G+L  D +    P     WAAL+      G++  L  AI  +            IE   
Sbjct: 593 RGVLHPDHYPNAEPRWADRWAALRTRIAATGMRNSLLLAIAPTATIASIAGVYECIEPQV 652

Query: 699 PYMLYKDACNRKSNQQNLEVIEEL 722
             +  ++  + +  Q N  +IEEL
Sbjct: 653 SNLFKRETLSGEFLQVNAYLIEEL 676


>gi|408529355|emb|CCK27529.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           davawensis JCM 4913]
          Length = 781

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/476 (45%), Positives = 300/476 (63%), Gaps = 8/476 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV  DAQWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNEDAQWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y++ E  G   + + AR L+  ++ +  +TG  +M +KDA N
Sbjct: 356 PADVPELVDLWGEEFDAAYRRAEDAGLARKTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 415

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L    +  SNLCTEI+E T   E AVCNL S+ L  ++  A+   ++ +L   
Sbjct: 416 RTANQTALPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--ANGDIDWERLDAT 473

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 533

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  +QG+L  D +    T    WAAL+ +IA
Sbjct: 534 RIAERIMLAAYEASADLAERNGPLPAWEKTRTAQGVLHPDHYDAELTWPERWAALRSRIA 593

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL ELG
Sbjct: 594 GTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKELG 653

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 654 VWDARTREALREANGSVQDFVWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 713

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA---ANAIQFTIDKTKMANAMA 561
           +++      K+SSM+ + WK GLKT  YYLR++PA   A A Q T+   + A+A+A
Sbjct: 714 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIARAAQATLPVQQSADAVA 768



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 125/185 (67%), Gaps = 4/185 (2%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 585 WAALRSRIAGTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 644

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL ELG+WD   ++ L   NGS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 645 LVNDLKELGVWDARTREALREANGSVQDFVWIPEDVRRLYRTAWEIPQRGLIDMAAARTP 704

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA---ANAIQFTIDKTKM 960
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA   A A Q T+   + 
Sbjct: 705 FLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIARAAQATLPVQQS 763

Query: 961 ANAMA 965
           A+A+A
Sbjct: 764 ADAVA 768



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV  DAQWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNEDAQWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y++ E  GL 
Sbjct: 356 PADVPELVDLWGEEFDAAYRRAEDAGLA 383



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 507 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG+L  D +    T    WAAL+      G++
Sbjct: 567 QGVLHPDHYDAELTWPERWAALRSRIAGTGMR 598


>gi|254388986|ref|ZP_05004217.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|294814922|ref|ZP_06773565.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443294|ref|ZP_08218028.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197702704|gb|EDY48516.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           clavuligerus ATCC 27064]
 gi|218078698|emb|CAB90707.4| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces clavuligerus ATCC 27064]
 gi|294327521|gb|EFG09164.1| Ribonucleoside-diphosphate reductase [Streptomyces clavuligerus
           ATCC 27064]
          Length = 810

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 313/508 (61%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 317 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFS 376

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+K EA G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 377 PADVPELVDLWGDEFDAAYRKAEAAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDASN 436

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  +++  D   ++ +L   
Sbjct: 437 RTANQTALPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVSGGD--IDWERLDAT 494

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 495 VRTAVTFLDRVVDINFYPTEQAGRSNTKWRPVGLGAMGLQDVFFQLRLPFDSAEARALST 554

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R GP   +E +  ++G+L  D +GV       WAAL+E++A
Sbjct: 555 RIAERIMLAAYEASADLAERHGPLPAWEKTRTARGVLHPDHYGVEQHWPERWAALRERVA 614

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 615 TTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKRLG 674

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GSIQ    +P ++++LY+T WEIPQ+ ++DMAA R  +IDQSQSLN
Sbjct: 675 VWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTPYIDQSQSLN 734

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A +   A + 
Sbjct: 735 LFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAASGTAAAAP 783

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             +   Q+    A+ C  +N E C   Q
Sbjct: 784 ATVPV-QQVPQDAVACSLENPESCEACQ 810



 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/213 (43%), Positives = 131/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 606 WAALRERVATTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 665

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LG+WD   ++ L   +GSIQ    +P ++++LY+T WEIPQ+ ++DMAA R  
Sbjct: 666 LVAELKRLGVWDAQTREALRDASGSIQGFNWVPDEVRELYRTAWEIPQRGLIDMAAARTP 725

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           +IDQSQSLN++M      K+SSM+ + WK GLKT  YYLR++PA       I +     A
Sbjct: 726 YIDQSQSLNLFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATR-----IARAASGTA 779

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A+  T   +++  D      A+ C  +N E C
Sbjct: 780 AAAPATVPVQQVPQD------AVACSLENPESC 806



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 317 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVQADTEWSLFS 376

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG++FD  Y+K EA GL 
Sbjct: 377 PADVPELVDLWGDEFDAAYRKAEAAGLA 404



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EAS ++A R GP   +E +  +
Sbjct: 528 LGAMGLQDVFFQLRLPFDSAEARALSTRIAERIMLAAYEASADLAERHGPLPAWEKTRTA 587

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV       WAAL+      G++
Sbjct: 588 RGVLHPDHYGVEQHWPERWAALRERVATTGMR 619


>gi|302521844|ref|ZP_07274186.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
 gi|302430739|gb|EFL02555.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB78]
          Length = 790

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 311/508 (61%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+F+  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL SI L  +++  + T ++ +L + 
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVD--NGTIDWERLDET 473

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP +EA NSN R RP+G+G  GL D+F ++RLPFD  E++ ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A + GP   +E +  ++G+L  D + V  T    W AL+ +IA
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHYDVERTWPERWEALRARIA 593

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 594 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 653

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R AF+DQSQSLN
Sbjct: 654 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 713

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ H W  GLKT  YYLR++PA    +        A  +  + +   
Sbjct: 714 LFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPATRIARAAGSPAAEAAPIPVQQSVPD 772

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            E          A+ C  +N E C   Q
Sbjct: 773 AE----------AIACSLENPESCEACQ 790



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 11/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 585 WEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGY 644

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R A
Sbjct: 645 LVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTA 704

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN++M      K+SSM+ H W  GLKT  YYLR++PA       I +   + A
Sbjct: 705 FLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPATR-----IARAAGSPA 758

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
             +     Q+ +  D E    A+ C  +N E C
Sbjct: 759 AEAAPIPVQQSVP-DAE----AIACSLENPESC 786



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+F+  Y+  EA+GL 
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLA 383



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ ++ +I E I   A EAS ++A + GP   +E +  +
Sbjct: 507 LGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLAEKHGPVPAWEKTRTA 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    W AL+      G++
Sbjct: 567 RGVLHPDHYDVERTWPERWEALRARIARSGMR 598


>gi|318060205|ref|ZP_07978928.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actG]
 gi|318077112|ref|ZP_07984444.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SA3_actF]
          Length = 767

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 311/508 (61%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 273 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 332

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+F+  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 333 PADVPELTDLWGEEFEAAYRAAEAKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 392

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL SI L  +++  + T ++ +L + 
Sbjct: 393 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVD--NGTIDWERLDET 450

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP +EA NSN R RP+G+G  GL D+F ++RLPFD  E++ ++ 
Sbjct: 451 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 510

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A + GP   +E +  ++G+L  D + V  T    W AL+ +IA
Sbjct: 511 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHYDVERTWPERWEALRARIA 570

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 571 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 630

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R AF+DQSQSLN
Sbjct: 631 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 690

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ H W  GLKT  YYLR++PA    +        A  +  + +   
Sbjct: 691 LFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPATRIARAAGSPAAEAAPIPVQQSVPD 749

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            E          A+ C  +N E C   Q
Sbjct: 750 AE----------AIACSLENPESCEACQ 767



 Score =  176 bits (447), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 115/164 (70%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 562 WEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGY 621

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R A
Sbjct: 622 LVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTA 681

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN++M      K+SSM+ H W  GLKT  YYLR++PA
Sbjct: 682 FLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPA 724



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 273 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 332

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+F+  Y+  EA+GL 
Sbjct: 333 PADVPELTDLWGEEFEAAYRAAEAKGLA 360



 Score = 63.5 bits (153), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ ++ +I E I   A EAS ++A + GP   +E +  +
Sbjct: 484 LGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASADLAEKHGPVPAWEKTRTA 543

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    W AL+      G++
Sbjct: 544 RGVLHPDHYDVERTWPERWEALRARIARSGMR 575


>gi|333024514|ref|ZP_08452578.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
 gi|332744366|gb|EGJ74807.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Streptomyces sp. Tu6071]
          Length = 790

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 315/508 (62%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+F+  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLARKTIPARELYGRMMRTLAQTGQGWMTFKDHSN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL SI L  +++  + T ++ +L + 
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVD--NGTIDWERLDET 473

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP +EA NSN R RP+G+G  GL D+F ++RLPFD  E++ ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTDEAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAEAKAVST 533

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A + GP   +E +  ++G+L  D + V  T    W AL+ +IA
Sbjct: 534 RIAERIMLAAYEASVDLAEKHGPVPAWEKTRTARGVLHPDHYDVERTWPERWEALRARIA 593

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 594 RSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 653

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R AF+DQSQSLN
Sbjct: 654 VWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 713

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ H W  GLKT  YYLR++PA       I +   A A  +     Q
Sbjct: 714 LFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPATR-----IARAAGAPAAEAAPIPVQ 767

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           + +  D E    A+ C  +N E C   Q
Sbjct: 768 QSVP-DAE----AIACSLENPESCEACQ 790



 Score =  176 bits (447), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 115/164 (70%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 585 WEALRARIARSGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGY 644

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L   NGS+Q    IP++++ LY+T WE+PQ+ ++DMAA+R A
Sbjct: 645 LVEDLKKLGVWDARTREALREANGSVQGFNWIPEEVRALYRTAWELPQRGLIDMAAERTA 704

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN++M      K+SSM+ H W  GLKT  YYLR++PA
Sbjct: 705 FLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPA 747



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +DA+WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADAEWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+F+  Y+  EA+GL 
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLA 383



 Score = 63.2 bits (152), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ ++ +I E I   A EAS ++A + GP   +E +  +
Sbjct: 507 LGAMGLQDVFFKLRLPFDSAEAKAVSTRIAERIMLAAYEASVDLAEKHGPVPAWEKTRTA 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    W AL+      G++
Sbjct: 567 RGVLHPDHYDVERTWPERWEALRARIARSGMR 598


>gi|238061573|ref|ZP_04606282.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
 gi|237883384|gb|EEP72212.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. ATCC 39149]
          Length = 792

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/508 (43%), Positives = 308/508 (60%), Gaps = 24/508 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLID 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE+FD  Y+   AE K IR V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 367 PSDAPELPDLYGEEFDAAYRI--AEKKAIRTVKARDLYGRMMRTLAQTGNGWMTFKDPSN 424

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +   TI  SNLCTEI+E  S  E AVCNL SI L  ++       ++ KL+  
Sbjct: 425 RLSNQTGVPGNTIHLSNLCTEILEVNSDTETAVCNLGSINLGAHVTV--DGVDWVKLRST 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP  +A  SN R RP+G+G+ GL D F  +RLPFD   +R L+ 
Sbjct: 483 VRTAVVFLDRVIDINYYPATQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAAARELST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I+  ALE S  ++ R GP+  Y  +  ++G L  D+WGV PT    WAAL+  IA
Sbjct: 543 RVQEEIFLTALETSAGLSERFGPHPAYAETRAARGELHPDLWGVEPTQTERWAALRATIA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  +N +L+R+L   G
Sbjct: 603 AHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLVRELKAHG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   ++DQ+    GS+Q I+ +P  +++L++T WE+PQ+T++D+AA R  +IDQSQSLN
Sbjct: 663 LWTPQIRDQIKRAEGSVQGIDDLPADVRELFRTAWELPQRTLIDLAAARAPYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++++     K+SSM+ + WK GLKT  YYLR++PA    Q T+       A+    A S 
Sbjct: 723 LFLSAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQQATV-------AVKPVVAVSD 774

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            E          A+ C  +N E C   Q
Sbjct: 775 TE----------ALACSLENPESCEACQ 792



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 138/225 (61%), Gaps = 18/225 (8%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WGV PT    WAAL+  IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 582 DLWGVEPTQTERWAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRE 641

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  +N +L+R+L   GLW   ++DQ+    GS+Q I+ +P  +++L++T WE+PQ
Sbjct: 642 TMSGEFLQINTYLVRELKAHGLWTPQIRDQIKRAEGSVQGIDDLPADVRELFRTAWELPQ 701

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           +T++D+AA R  +IDQSQSLN++++     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 702 RTLIDLAAARAPYIDQSQSLNLFLSAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQ 760

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+    +   +A  DT               A+ C  +N E C
Sbjct: 761 QATV---AVKPVVAVSDTE--------------ALACSLENPESC 788



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 58/87 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLID 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D +GE+FD  Y+  E + +
Sbjct: 367 PSDAPELPDLYGEEFDAAYRIAEKKAI 393



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 18/161 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD   +R L+ ++ E I+  ALE S  ++ R GP+  Y  +  +
Sbjct: 516 LGLMGLQDAFFTLRLPFDSAAARELSTRVQEEIFLTALETSAGLSERFGPHPAYAETRAA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQ-----------IETGTP 699
           +G L  D+WGV PT    WAAL+     +GL+  L  AI  +            IE    
Sbjct: 576 RGELHPDLWGVEPTQTERWAALRATIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVS 635

Query: 700 YMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDK 740
            +  ++  + +  Q N  ++ EL     K  G  TP I D+
Sbjct: 636 NLFKRETMSGEFLQINTYLVREL-----KAHGLWTPQIRDQ 671


>gi|289769188|ref|ZP_06528566.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
 gi|289699387|gb|EFD66816.1| ribonucleotide-diphosphate reductase large subunit [Streptomyces
           lividans TK24]
          Length = 794

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/454 (44%), Positives = 289/454 (63%), Gaps = 3/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 303 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+FD  Y++ E  G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 363 PADVPELTDLWGEEFDAAYRRAEEAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 422

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L  +++PA    ++ +L   
Sbjct: 423 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 483 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R+GP   +E +  ++G+L  D +GV P     WAAL+ ++A
Sbjct: 543 RIAERIMLAAYETSADLAERNGPLPAWEKTRTAKGVLHPDHYGVEPAWPERWAALRARMA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 603 TTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  ++DQ+QSLN
Sbjct: 663 VWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           +++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 723 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 755



 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV P     WAAL+ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 582 DHYGVEPAWPERWAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 641

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ DL  LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ
Sbjct: 642 TLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQ 701

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           + ++DMAA R  ++DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 702 RGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 755



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 303 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+FD  Y++ E  GL 
Sbjct: 363 PADVPELTDLWGEEFDAAYRRAEEAGLA 390



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E S ++A R+GP   +E +  +
Sbjct: 516 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV P     WAAL+      GL+
Sbjct: 576 KGVLHPDHYGVEPAWPERWAALRARMATTGLR 607


>gi|358457764|ref|ZP_09167980.1| ribonucleoside-diphosphate reductase, alpha subunit [Frankia sp.
           CN3]
 gi|357079044|gb|EHI88487.1| ribonucleoside-diphosphate reductase, alpha subunit [Frankia sp.
           CN3]
          Length = 837

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/526 (41%), Positives = 314/526 (59%), Gaps = 30/526 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D  WSLM 
Sbjct: 322 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLSLAHWIPDEFMRRVRADESWSLMD 381

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L+D WG++FD  Y+  E  G+++RQ+PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 382 PDEVPELTDLWGDEFDRAYRAAETAGRYVRQLPARDLYARMMRTLAQTGNGWMTFKDAAN 441

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI--------NPADKTY 260
           R  NQ  +    I  SNLCTEI+E TS  E AVCNL S+ L  ++        +P+  + 
Sbjct: 442 RTGNQTAEPGNVIHLSNLCTEILEVTSDAETAVCNLGSVNLARHLLAPRLADGDPSTSST 501

Query: 261 NFTK----------LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADL 310
             T           L+   +     L+++ID+N+YP  EA  SN R RP+G+GV GL D+
Sbjct: 502 APTADPGGRIDWAMLRATVRTAVTFLDRVIDINYYPTGEAAASNPRWRPVGLGVMGLQDV 561

Query: 311 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW 370
           F  +RLPFD   +R L+ ++ E I   ALE S E+A   GP+  +  +  ++G+L  D +
Sbjct: 562 FFALRLPFDSAAARELSTRLSEEIVLTALERSVELAREHGPHPAFAQTRAARGVLHPDHF 621

Query: 371 GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS 430
            VTP+    WAAL+  I +HG+RN LLIA  PTA+ A I G  E  EP  SN++ R  LS
Sbjct: 622 DVTPSQPARWAALRADIVEHGLRNCLLIAIAPTATIASIAGCYECIEPQVSNVFKRETLS 681

Query: 431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTV 490
           GEF  +N +L+ +L   GLW   +++++    GS+Q+I  +P  L+ L++T WE+PQ+ +
Sbjct: 682 GEFLQINSYLVEELRGRGLWTAPVRERIRAAEGSVQEIGELPDDLRVLFRTAWELPQRAL 741

Query: 491 LDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           +D+AA R  +IDQSQSLN++MA+ N  ++SSM+ + W  GLKT  YYLR++PA    Q T
Sbjct: 742 IDLAAARTPYIDQSQSLNLFMADPNIGRLSSMYSYAWSSGLKT-TYYLRSRPATRIQQAT 800

Query: 551 IDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +         A+      +E   D E+A AA+ C  +N E C   Q
Sbjct: 801 V--------TAATHTIPTQETPRDGEEA-AAVACSLENPEICEACQ 837



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 10/225 (4%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D + VTP+    WAAL+  I +HG+RN LLIA  PTA+ A I G  E  EP  SN++ R 
Sbjct: 619 DHFDVTPSQPARWAALRADIVEHGLRNCLLIAIAPTATIASIAGCYECIEPQVSNVFKRE 678

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  +N +L+ +L   GLW   +++++    GS+Q+I  +P  L+ L++T WE+PQ
Sbjct: 679 TLSGEFLQINSYLVEELRGRGLWTAPVRERIRAAEGSVQEIGELPDDLRVLFRTAWELPQ 738

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  +IDQSQSLN++MA+ N  ++SSM+ + W  GLKT  YYLR++PA    
Sbjct: 739 RALIDLAAARTPYIDQSQSLNLFMADPNIGRLSSMYSYAWSSGLKT-TYYLRSRPATRIQ 797

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+         A+  T   +E   D E+A AA+ C  +N E C
Sbjct: 798 QATV--------TAATHTIPTQETPRDGEEA-AAVACSLENPEIC 833



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 57/86 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D  WSLM 
Sbjct: 322 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLSLAHWIPDEFMRRVRADESWSLMD 381

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L+D WG++FD  Y+  E  G
Sbjct: 382 PDEVPELTDLWGDEFDRAYRAAETAG 407



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F  +RLPFD   +R L+ ++ E I   ALE S E+A   GP+  +  +  +
Sbjct: 553 LGVMGLQDVFFALRLPFDSAAARELSTRLSEEIVLTALERSVELAREHGPHPAFAQTRAA 612

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + VTP+    WAAL+   + +GL+
Sbjct: 613 RGVLHPDHFDVTPSQPARWAALRADIVEHGLR 644


>gi|86261680|emb|CAC17629.2| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces jumonjinensis]
          Length = 811

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 310/508 (61%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 318 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFS 377

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG+ FD  Y++ EA G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 378 PSDVPELVDLWGDDFDTAYRRAEAAGLARKTMPARELYGRMMRTLAQTGNGWMTFKDASN 437

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  ++   D   ++ +L   
Sbjct: 438 RTANQTALPGRTVHSSNLCTEILEVTDDAETAVCNLGSVNLAAFVTQDD--IDWERLDAT 495

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q++LPFD   +R L+ 
Sbjct: 496 VRTAVTFLDRVVDINFYPTEQAGRSNNRWRPVGLGAMGLQDVFFQLKLPFDSPAARTLST 555

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R GP   +  +  + G+L  D +  TP     W AL+E+IA
Sbjct: 556 RIAERIMLAAYEASADLAERHGPLPAWNETRTAHGVLHPDHYNTTPHWPDRWNALRERIA 615

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+++L  LG
Sbjct: 616 ATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNTYLVQELKNLG 675

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGSIQ+   +P  +++LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 676 VWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 735

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK G+KT  YYLR++PA          T++A A ++ +A + 
Sbjct: 736 LFLETPTIGKLSSMYAYAWKQGIKT-TYYLRSRPA----------TRIARAASNTNAGAT 784

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             + A Q     A+ C  +N E C   Q
Sbjct: 785 VPVPA-QTTPEDAVACSLENPESCEACQ 811



 Score =  177 bits (448), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 137/225 (60%), Gaps = 12/225 (5%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +  TP     W AL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 595 DHYNTTPHWPDRWNALRERIAATGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 654

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+++L  LG+WD   ++ L   NGSIQ+   +P  +++LY+T WEIPQ
Sbjct: 655 TLSGEFLQVNTYLVQELKNLGVWDATTREALRDANGSIQNFTQVPADVRELYRTAWEIPQ 714

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQSQSLN+++      K+SSM+ + WK G+KT  YYLR++PA    
Sbjct: 715 RGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGIKT-TYYLRSRPA---- 769

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A ++ +  +   + A Q     A+ C  +N E C
Sbjct: 770 ------TRIARAASNTNAGATVPVPA-QTTPEDAVACSLENPESC 807



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 318 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADTAWSLFS 377

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WG+ FD  Y++ EA GL 
Sbjct: 378 PSDVPELVDLWGDDFDTAYRRAEAAGLA 405



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q++LPFD   +R L+ +I E I   A EAS ++A R GP   +  +  +
Sbjct: 529 LGAMGLQDVFFQLKLPFDSPAARTLSTRIAERIMLAAYEASADLAERHGPLPAWNETRTA 588

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQ-----------IETGTP 699
            G+L  D +  TP     W AL+      GL+  L  AI  +            IE    
Sbjct: 589 HGVLHPDHYNTTPHWPDRWNALRERIAATGLRNSLLLAIAPTATIASIAGVYECIEPQVS 648

Query: 700 YMLYKDACNRKSNQQNLEVIEELYNM 725
            +  ++  + +  Q N  +++EL N+
Sbjct: 649 NLFKRETLSGEFLQVNTYLVQELKNL 674


>gi|330467633|ref|YP_004405376.1| ribonucleoside-diphosphate reductase subunit alpha [Verrucosispora
           maris AB-18-032]
 gi|328810604|gb|AEB44776.1| ribonucleoside-diphosphate reductase, alpha subunit [Verrucosispora
           maris AB-18-032]
          Length = 791

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 312/508 (61%), Gaps = 20/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 302 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLID 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE FD+ Y+   AE K +R V AR L+  ++ +  +TG  +M +KDA N
Sbjct: 362 PSDAPELPDLYGEAFDEAYRA--AEKKAVRTVKARDLYGRMMRTLAQTGNGWMTFKDAAN 419

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ      TI  SNLCTEI+E  +  E AVCNL SI L  ++  AD   ++ KL+  
Sbjct: 420 RLSNQTGAPGNTIHLSNLCTEILEVNNDTETAVCNLGSINLAAHLT-ADG-IDWEKLRAT 477

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP ++A  SN R RP+G+G+ GL D F  +R+PFD   +R L+ 
Sbjct: 478 VRTAVLFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRMPFDSTPARELSS 537

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I   ALE S ++A + GP+  Y+ +  ++G L  D+WG   T    WAAL+E IA
Sbjct: 538 RVQEEILLTALETSAQLAQQFGPHPAYDDTRAARGELHPDLWGADLTQAQRWAALRETIA 597

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  +N +L+R+L   G
Sbjct: 598 AHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLVRELKARG 657

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW  ++++Q+    GS+Q I  +P+ ++ L++T WE+PQ+ ++D+AA R  FIDQSQSLN
Sbjct: 658 LWTASIREQIKRAEGSVQGIAELPEDVRQLFRTAWELPQRALIDLAAARAPFIDQSQSLN 717

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++++     K+SSM+ + WK GLKT  YYLR++PA    Q T+  T  A A+ +      
Sbjct: 718 LFISAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQQATVAVTPAAPAIVAV----- 771

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                D E    A+ C  +N E C   Q
Sbjct: 772 ----GDDE----ALACSLENPESCEACQ 791



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 138/225 (61%), Gaps = 14/225 (6%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WG   T    WAAL+E IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 577 DLWGADLTQAQRWAALRETIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRE 636

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  +N +L+R+L   GLW  ++++Q+    GS+Q I  +P+ ++ L++T WE+PQ
Sbjct: 637 TMSGEFLQINTYLVRELKARGLWTASIREQIKRAEGSVQGIAELPEDVRQLFRTAWELPQ 696

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  FIDQSQSLN++++     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 697 RALIDLAAARAPFIDQSQSLNLFISAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQ 755

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+  T  A A+ +           D E    A+ C  +N E C
Sbjct: 756 QATVAVTPAAPAIVAV---------GDDE----ALACSLENPESC 787



 Score = 99.4 bits (246), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 58/87 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 302 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGDWSLID 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D +GE FD+ Y+  E + +
Sbjct: 362 PSDAPELPDLYGEAFDEAYRAAEKKAV 388



 Score = 71.2 bits (173), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +R+PFD   +R L+ ++ E I   ALE S ++A + GP+  Y+ +  +
Sbjct: 511 LGLMGLQDAFFTLRMPFDSTPARELSSRVQEEILLTALETSAQLAQQFGPHPAYDDTRAA 570

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G L  D+WG   T    WAAL+     +GL+
Sbjct: 571 RGELHPDLWGADLTQAQRWAALRETIAAHGLR 602


>gi|21223594|ref|NP_629373.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
 gi|8546892|emb|CAB94611.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           coelicolor A3(2)]
          Length = 791

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/454 (44%), Positives = 289/454 (63%), Gaps = 3/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+FD  Y++ E  G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L  +++PA    ++ +L   
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R+GP   +E +  ++G+L  D +GV P     WAAL+ ++A
Sbjct: 540 RIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEPAWPERWAALRARMA 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 600 TTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  ++DQ+QSLN
Sbjct: 660 VWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           +++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 720 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 752



 Score =  171 bits (432), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/175 (47%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV P     WAAL+ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 579 DHYGVEPAWPERWAALRARMATTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 638

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ DL  LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ
Sbjct: 639 TLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQ 698

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           + ++DMAA R  ++DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 699 RGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 752



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+FD  Y++ E  GL 
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLA 387



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E S ++A R+GP   +E +  +
Sbjct: 513 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTA 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV P     WAAL+      GL+
Sbjct: 573 RGVLHPDHYGVEPAWPERWAALRARMATTGLR 604


>gi|386383362|ref|ZP_10068864.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           tsukubaensis NRRL18488]
 gi|385669177|gb|EIF92418.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           tsukubaensis NRRL18488]
          Length = 801

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/510 (42%), Positives = 314/510 (61%), Gaps = 21/510 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA+WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAEWSLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 369 PADTPELVDLWGDEFDAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGNGWMTFKDAAN 428

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +   T+  SNLCTEI+E T   E AVCNL S+ L  ++   +   ++ +L   
Sbjct: 429 RTANQTAEKGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGGE--IDWERLDAT 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 487 VRTAVTFLDRVVDINFYPTEQAGRSNTRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R G +  +E +  ++G+L  D +G  P     W AL+ +IA
Sbjct: 547 RIAERIMLAAYEASADLAERHGTFPAWEKTRAARGVLHPDHYGTEPAWPERWEALRARIA 606

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 607 RTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVAELKKLG 666

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    +P  +++LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 667 VWDAQTREALRDANGSVQGFSWVPADVRELYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 726

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A AS  A + 
Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA-ASGSAATP 774

Query: 569 EEI--QADQEQAMAAMICRRDNKEDCIGVQ 596
             +  QA  E+A+A   C  +N E C   Q
Sbjct: 775 VPVPAQATPEEAVA---CSLENPESCEACQ 801



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/226 (42%), Positives = 137/226 (60%), Gaps = 15/226 (6%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +G  P     W AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 586 DHYGTEPAWPERWEALRARIARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 645

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ +L +LG+WD   ++ L   NGS+Q    +P  +++LY+T WEIPQ
Sbjct: 646 TLSGEFLQVNSYLVAELKKLGVWDAQTREALRDANGSVQGFSWVPADVRELYRTAWEIPQ 705

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++DMAA R  ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 706 RGLIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA---- 760

Query: 952 QFTIDKTKMANAMA-SKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
                 T++A A + S  T      QA  E+A+A   C  +N E C
Sbjct: 761 ------TRIARAASGSAATPVPVPAQATPEEAVA---CSLENPESC 797



 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA+WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAEWSLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG++FD  Y+  EA+GL 
Sbjct: 369 PADTPELVDLWGDEFDAAYRAAEAKGLA 396



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EAS ++A R G +  +E +  +
Sbjct: 520 LGAMGLQDVFFQLRLPFDSPEARALSTRIAERIMLAAYEASADLAERHGTFPAWEKTRAA 579

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +G  P     W AL+      G++
Sbjct: 580 RGVLHPDHYGTEPAWPERWEALRARIARTGMR 611


>gi|294631327|ref|ZP_06709887.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
 gi|292834660|gb|EFF93009.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. e14]
          Length = 798

 Score =  421 bits (1082), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/508 (42%), Positives = 308/508 (60%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 305 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 364

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG +FD  Y+  E  G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 365 PSDVPELVDLWGAEFDAAYRAAEERGLARKTMPARELYGRMMRTLAQTGNGWMTFKDAAN 424

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    I  SNLCTEI+E T   E AVCNL S+ L  ++   D   ++ +L + 
Sbjct: 425 RTANQTAEPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGD--IDWERLDET 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD   +R L+ 
Sbjct: 483 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAGARALST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R GP   +E +  ++G+L  D + V+ T    W AL+E+IA
Sbjct: 543 RIAERIMLAAYEASADLAERHGPLPAWEKTRAARGVLHPDHYDVSLTWPERWTALRERIA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 603 AVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVNDLKALG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  F+DQ+QSLN
Sbjct: 663 VWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTPFLDQAQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A   +   ++
Sbjct: 723 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAAQGRTP-AE 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             + A Q     A+ C  +N E C   Q
Sbjct: 771 AALPAQQTADPDAVACSLENPESCEACQ 798



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 594 WTALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 653

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L  +NGS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 654 LVNDLKALGVWDARTREALRDSNGSVQDFAWIPADVRALYRTAWEIPQRGLIDMAAARTP 713

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 714 FLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA 762

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A   T ++  + A Q     A+ C  +N E C
Sbjct: 763 -AQGRTPAEAALPAQQTADPDAVACSLENPESC 794



 Score =  100 bits (248), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 56/88 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV +D QWSL  
Sbjct: 305 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVNADGQWSLFS 364

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WG +FD  Y+  E  GL 
Sbjct: 365 PSDVPELVDLWGAEFDAAYRAAEERGLA 392



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD   +R L+ +I E I   A EAS ++A R GP   +E +  +
Sbjct: 516 LGAMGLQDVFFKLRLPFDSAGARALSTRIAERIMLAAYEASADLAERHGPLPAWEKTRAA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V+ T    W AL+      G++
Sbjct: 576 RGVLHPDHYDVSLTWPERWTALRERIAAVGMR 607


>gi|7328344|emb|CAB82485.1| class I ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces coelicolor A3(2)]
          Length = 791

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/454 (44%), Positives = 289/454 (63%), Gaps = 3/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+FD  Y++ E  G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 419

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       +  SNLCTEI+E T   E AVCNL S+ L  +++PA    ++ +L   
Sbjct: 420 RTANQTATPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDPAHGDMDWERLDAT 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E++ L+ 
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEAKALST 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R+GP   +E +  ++G+L  D +GV P     WAAL+ ++A
Sbjct: 540 RIAERIMLAAYETSADLAERNGPLPAWEKTRTARGVLHPDHYGVEPAWPERWAALRARMA 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNS+L+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 600 TTGLRNSMLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  ++DQ+QSLN
Sbjct: 660 VWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQRGLIDMAAARTPYLDQAQSLN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           +++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 720 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 752



 Score =  169 bits (429), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/175 (46%), Positives = 116/175 (66%), Gaps = 1/175 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +GV P     WAAL+ ++A  G+RNS+L+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 579 DHYGVEPAWPERWAALRARMATTGLRNSMLLAIAPTATIASIAGVYECIEPQVSNLFKRE 638

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ DL  LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WEIPQ
Sbjct: 639 TLSGEFLQVNSYLVDDLKRLGVWDARTREALREANGSVQGFTWIPEDVRALYRTAWEIPQ 698

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           + ++DMAA R  ++DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 699 RGLIDMAAARTPYLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 752



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH D+ +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 300 RKGAAAVYLETWHADVEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADGTWSLFS 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+FD  Y++ E  GL 
Sbjct: 360 PADVPELTDLWGEEFDAAYRRAEEAGLA 387



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E++ L+ +I E I   A E S ++A R+GP   +E +  +
Sbjct: 513 LGAMGLQDVFFQLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERNGPLPAWEKTRTA 572

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV P     WAAL+      GL+
Sbjct: 573 RGVLHPDHYGVEPAWPERWAALRARMATTGLR 604


>gi|256391239|ref|YP_003112803.1| ribonucleoside-diphosphate reductase subunit alpha [Catenulispora
           acidiphila DSM 44928]
 gi|256357465|gb|ACU70962.1| ribonucleoside-diphosphate reductase, alpha subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 841

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/457 (44%), Positives = 295/457 (64%), Gaps = 5/457 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FL+L+ NTG++  R  +L    WIPDEFMRRVE+D  WSLM 
Sbjct: 356 RKGAACVYLEPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMD 415

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WG +FD  Y+K EAEG++ RQV AR+L+  ++ +  +TG  +M +KDA N
Sbjct: 416 PDQVPELPDLWGAEFDAAYRKAEAEGRYSRQVSARELYGKMMRTLAQTGNGWMTFKDASN 475

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           +  NQ  +   T+  SNLCTEI+E +S  E AVCNL SI L  ++ PA    ++ +L+  
Sbjct: 476 QLCNQTGVPGNTVHLSNLCTEIIEVSSDTETAVCNLGSINLAAHLTPARDAVDWDRLRAT 535

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP E+   SN R RP+G+G+ GL D+F  +RLPFD   +R L+ 
Sbjct: 536 VRTAVVFLDRVIDINYYPSEQTAASNPRWRPVGLGLMGLQDVFFALRLPFDDERARELST 595

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV--TPTDLWDWAALKEK 386
           +I E IY  ALE S  +A   G +  +  +  ++G LQ D+W V  +P     W A++ +
Sbjct: 596 RISEEIYLTALETSAGLAEEFGAHPAFADTRAAKGDLQPDLWNVATSPELATRWNAVRGR 655

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  +N  L+ +L  
Sbjct: 656 VAATGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETLSGEFLQINSALVGELKA 715

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LGLW   +++ +    GS+Q +E +P +++ LY+T WE+PQ+ ++D+AA RG FIDQSQS
Sbjct: 716 LGLWTPAVREAIKRAEGSVQGVEALPAEVRALYRTAWELPQRALIDLAAARGPFIDQSQS 775

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543
           LN+++A     K+SSM+ + WK GLK+  YYLR++PA
Sbjct: 776 LNLFLAAPTIGKLSSMYMYAWKAGLKS-TYYLRSRPA 811



 Score =  172 bits (437), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 120/181 (66%), Gaps = 3/181 (1%)

Query: 769 FKYDMWGV--TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
            + D+W V  +P     W A++ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN
Sbjct: 632 LQPDLWNVATSPELATRWNAVRGRVAATGLRNSLLVAIAPTATIASIAGCYECIEPQVSN 691

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           ++ R  LSGEF  +N  L+ +L  LGLW   +++ +    GS+Q +E +P +++ LY+T 
Sbjct: 692 LFKRETLSGEFLQINSALVGELKALGLWTPAVREAIKRAEGSVQGVEALPAEVRALYRTA 751

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           WE+PQ+ ++D+AA RG FIDQSQSLN+++A     K+SSM+ + WK GLK+  YYLR++P
Sbjct: 752 WELPQRALIDLAAARGPFIDQSQSLNLFLAAPTIGKLSSMYMYAWKAGLKS-TYYLRSRP 810

Query: 947 A 947
           A
Sbjct: 811 A 811



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 59/86 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FL+L+ NTG++  R  +L    WIPDEFMRRVE+D  WSLM 
Sbjct: 356 RKGAACVYLEPWHPDIEEFLQLRDNTGEDARRTHNLNLANWIPDEFMRRVEADGVWSLMD 415

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D WG +FD  Y+K EAEG
Sbjct: 416 PDQVPELPDLWGAEFDAAYRKAEAEG 441



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D+F  +RLPFD   +R L+ +I E IY  ALE S  +A   G +  +  +  +
Sbjct: 569 LGLMGLQDVFFALRLPFDDERARELSTRISEEIYLTALETSAGLAEEFGAHPAFADTRAA 628

Query: 653 QGILQYDMWGV--TPTDLWDWAALKVLALVYGLK 684
           +G LQ D+W V  +P     W A++      GL+
Sbjct: 629 KGDLQPDLWNVATSPELATRWNAVRGRVAATGLR 662


>gi|238613293|ref|XP_002398406.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
 gi|215474876|gb|EEB99336.1| hypothetical protein MPER_01004 [Moniliophthora perniciosa FA553]
          Length = 319

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/289 (66%), Positives = 236/289 (81%), Gaps = 2/289 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFA+Y+EPWH DIF F++L+KN GKEE RARDLFY LWIPD FM+RVE+ A WSL+C
Sbjct: 30  RPGAFAMYIEPWHADIFAFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEAGANWSLVC 89

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GL D +G +F+ LY+KYE EG+    +PA+KLW+AIL++Q+ETGTP+M YKD  N
Sbjct: 90  PNEAPGLPDVYGAEFEALYEKYEREGRARESIPAQKLWYAILEAQVETGTPFMCYKDHAN 149

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
            KSNQ+NLG IK SNLCTEI+EY+S DE AVCNLAS+AL  +++  +  +NF KL DVAK
Sbjct: 150 SKSNQKNLGVIKSSNLCTEIMEYSSPDETAVCNLASLALPTFVHKGE--FNFKKLHDVAK 207

Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
           +V  NLN+IIDVN+YPV EAR SNMRHRPIGIGVQGLAD F+ +RLPF+  E++LLN QI
Sbjct: 208 VVAFNLNRIIDVNYYPVPEARRSNMRHRPIGIGVQGLADTFMALRLPFESPEAKLLNIQI 267

Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD 379
           FETIYY AL+AS +IA +DGPY+T+ GSP  QG +QYD+ GVTPTDLWD
Sbjct: 268 FETIYYAALDASLDIAEKDGPYETWMGSPAQQGPMQYDIGGVTPTDLWD 316



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFA+Y+EPWH DIF F++L+KN GKEE RARDLFY LWIPD FM+RVE+ A WSL+C
Sbjct: 30  RPGAFAMYIEPWHADIFAFIDLRKNHGKEEVRARDLFYALWIPDLFMKRVEAGANWSLVC 89

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN   GL D +G +F+ LY+KYE EG
Sbjct: 90  PNEAPGLPDVYGAEFEALYEKYEREG 115



 Score =  118 bits (295), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 69/90 (76%), Gaps = 3/90 (3%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   IGVQGLAD F+ +RLPF+  E++LLN QIFETIYY AL+AS +IA +D
Sbjct: 227 ARRSNMRHRPIGIGVQGLADTFMALRLPFESPEAKLLNIQIFETIYYAALDASLDIAEKD 286

Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWD 670
           GPY+T+ GSP  QG +QYD+ GVTPTDLWD
Sbjct: 287 GPYETWMGSPAQQGPMQYDIGGVTPTDLWD 316



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW+AIL++Q+ETGTP+M YKD  N KSNQ+NL VI+
Sbjct: 125 KLWYAILEAQVETGTPFMCYKDHANSKSNQKNLGVIK 161


>gi|302867101|ref|YP_003835738.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569960|gb|ADL46162.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           aurantiaca ATCC 27029]
          Length = 798

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 309/508 (60%), Gaps = 18/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D +WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGEWSLVD 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE FD  Y+   AE   +R V AR L+  ++ +  +TG  +M +KDA N
Sbjct: 367 PSDAPELPDLYGEAFDAAYRA--AEKNAVRTVRARDLYGRMMRTLAQTGNGWMTFKDAAN 424

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E     E AVCNL S+ L  ++  AD   ++ +L+  
Sbjct: 425 RLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVT-ADGV-DWERLRAT 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP E+A  SN R RP+G+G+ GL D F  +RLPFD  +++ L+ 
Sbjct: 483 VRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAQAKELST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I   ALE S  +A R GP+  Y  +  ++G L  D+WG  P     WAAL+E+IA
Sbjct: 543 RVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQAGRWAALRERIA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  VN +L+R+L   G
Sbjct: 603 VHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSGEFLQVNTYLVRELKARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   ++D++    GS+QDI  +P  +++L++T WE+PQ+ ++D+AA R  FIDQSQSLN
Sbjct: 663 LWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALIDLAAARAPFIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++++     K+SSM+ + WK GLKT  YYLR++PA    Q T+    +A       A S 
Sbjct: 723 LFLSAPTIGKLSSMYLYAWKAGLKT-TYYLRSRPATRIQQATVAPV-LAPVSGVVSAVSD 780

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +E          A+ C  +N E C   Q
Sbjct: 781 DE----------ALACSLENPESCEACQ 798



 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 137/225 (60%), Gaps = 12/225 (5%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WG  P     WAAL+E+IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 582 DLWGAEPAQAGRWAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRE 641

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  VN +L+R+L   GLW   ++D++    GS+QDI  +P  +++L++T WE+PQ
Sbjct: 642 TMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQ 701

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  FIDQSQSLN++++     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 702 RALIDLAAARAPFIDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKT-TYYLRSRPATRIQ 760

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+    +A         S +E          A+ C  +N E C
Sbjct: 761 QATVAPV-LAPVSGVVSAVSDDE----------ALACSLENPESC 794



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/91 (49%), Positives = 58/91 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D +WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADGEWSLVD 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFR 91
           P+    L D +GE FD  Y+  E   +   R
Sbjct: 367 PSDAPELPDLYGEAFDAAYRAAEKNAVRTVR 397



 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD  +++ L+ ++ E I   ALE S  +A R GP+  Y  +  +
Sbjct: 516 LGLMGLQDAFFTLRLPFDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQ-----------IETGTP 699
           +G L  D+WG  P     WAAL+    V+GL+  L  AI  +            +E    
Sbjct: 576 KGDLHPDLWGAEPAQAGRWAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVS 635

Query: 700 YMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDK 740
            +  ++  + +  Q N  ++ EL     K  G  TP + D+
Sbjct: 636 NLFKRETMSGEFLQVNTYLVREL-----KARGLWTPQVRDR 671


>gi|315506489|ref|YP_004085376.1| ribonucleoside-diphosphate reductase subunit alpha [Micromonospora
           sp. L5]
 gi|315413108|gb|ADU11225.1| ribonucleoside-diphosphate reductase, alpha subunit [Micromonospora
           sp. L5]
          Length = 798

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 309/508 (60%), Gaps = 18/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    W+PDEFMRRVE+D +WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGEWSLVD 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE FD  Y+   AE   +R V AR L+  ++ +  +TG  +M +KDA N
Sbjct: 367 PSDAPELPDLYGEAFDAAYRA--AEKNAVRTVRARDLYGRMMRTLAQTGNGWMTFKDAAN 424

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E     E AVCNL S+ L  ++  AD   ++ +L+  
Sbjct: 425 RLSNQTGEPGNVIHLSNLCTEILEVNDDAETAVCNLGSVNLGAHVT-ADGV-DWERLRAT 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP E+A  SN R RP+G+G+ GL D F  +RLPFD  +++ L+ 
Sbjct: 483 VRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAQAKELST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I   ALE S  +A R GP+  Y  +  ++G L  D+WG  P     WAAL+E+IA
Sbjct: 543 RVQEEILLTALETSAGLAERFGPHPAYPQTRAAKGDLHPDLWGAEPAQAGRWAALRERIA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  VN +L+R+L   G
Sbjct: 603 VHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRETMSGEFLQVNTYLVRELKARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   ++D++    GS+QDI  +P  +++L++T WE+PQ+ ++D+AA R  F+DQSQSLN
Sbjct: 663 LWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQRALIDLAAARAPFVDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++++     K+SSM+ + WK GLKT  YYLR++PA    Q T+    +A       A S 
Sbjct: 723 LFLSAPTIGKLSSMYLYAWKAGLKT-TYYLRSRPATRIQQATVAPV-LAPVSGVVSAVSD 780

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +E          A+ C  +N E C   Q
Sbjct: 781 DE----------ALACSLENPESCEACQ 798



 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 137/225 (60%), Gaps = 12/225 (5%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WG  P     WAAL+E+IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 582 DLWGAEPAQAGRWAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVSNLFKRE 641

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  VN +L+R+L   GLW   ++D++    GS+QDI  +P  +++L++T WE+PQ
Sbjct: 642 TMSGEFLQVNTYLVRELKARGLWTPQVRDRIKRAEGSVQDITELPAPVRELFRTAWELPQ 701

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  F+DQSQSLN++++     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 702 RALIDLAAARAPFVDQSQSLNLFLSAPTIGKLSSMYLYAWKAGLKT-TYYLRSRPATRIQ 760

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           Q T+    +A         S +E          A+ C  +N E C
Sbjct: 761 QATVAPV-LAPVSGVVSAVSDDE----------ALACSLENPESC 794



 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 58/91 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    W+PDEFMRRVE+D +WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWVPDEFMRRVEADGEWSLVD 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLVYFR 91
           P+    L D +GE FD  Y+  E   +   R
Sbjct: 367 PSDAPELPDLYGEAFDAAYRAAEKNAVRTVR 397



 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD  +++ L+ ++ E I   ALE S  +A R GP+  Y  +  +
Sbjct: 516 LGLMGLQDAFFTLRLPFDSAQAKELSTRVQEEILLTALETSAGLAERFGPHPAYPQTRAA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK--LWFAILDSQ-----------IETGTP 699
           +G L  D+WG  P     WAAL+    V+GL+  L  AI  +            +E    
Sbjct: 576 KGDLHPDLWGAEPAQAGRWAALRERIAVHGLRNSLLVAIAPTATIASIAGCYECVEPQVS 635

Query: 700 YMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDK 740
            +  ++  + +  Q N  ++ EL     K  G  TP + D+
Sbjct: 636 NLFKRETMSGEFLQVNTYLVREL-----KARGLWTPQVRDR 671


>gi|386842423|ref|YP_006247481.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           hygroscopicus subsp. jinggangensis 5008]
 gi|374102724|gb|AEY91608.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           hygroscopicus subsp. jinggangensis 5008]
 gi|451795716|gb|AGF65765.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           hygroscopicus subsp. jinggangensis TL01]
          Length = 786

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 307/508 (60%), Gaps = 19/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE FD  Y+K EA G   + + AR L+  ++ +  +TG  +M +KDA N
Sbjct: 356 PADVPELVDLWGEDFDAAYRKAEAAGLAKKTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  +++ A    ++ +L   
Sbjct: 416 RTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVDAASGDIDWERLDQT 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 476 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R+GP   ++ +  ++G+L  D + V  T    WAAL+E++A
Sbjct: 536 RIAERIMLAAYETSADLAERNGPLPAWDQTRAARGVLHPDHYDVQFTWPERWAALRERVA 595

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RN+L++A  PT++ A I G  E  EP  SN++ R  LSGEF  VN +L++DL  LG
Sbjct: 596 AVGMRNALMLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKNLG 655

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGSIQD   IP++ + LY+T WEIPQ+ ++DMAA R  ++DQ QSLN
Sbjct: 656 VWDARTREALRDSNGSIQDFPWIPEETRALYRTAWEIPQRGLIDMAAARTPYLDQGQSLN 715

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A  +     Q
Sbjct: 716 LFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARAAQATVPAQQ 764

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                D      A+ C  +N E C   Q
Sbjct: 765 PAPDPD------AIACSLENPESCEACQ 786



 Score =  176 bits (445), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 17/213 (7%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E++A  G+RN+L++A  PT++ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 587 WAALRERVAAVGMRNALMLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 646

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L++DL  LG+WD   ++ L  +NGSIQD   IP++ + LY+T WEIPQ+ ++DMAA R  
Sbjct: 647 LVQDLKNLGVWDARTREALRDSNGSIQDFPWIPEETRALYRTAWEIPQRGLIDMAAARTP 706

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQ QSLN++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 707 YLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 755

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
             +     Q     D      A+ C  +N E C
Sbjct: 756 AQATVPAQQPAPDPD------AIACSLENPESC 782



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE FD  Y+K EA GL 
Sbjct: 356 PADVPELVDLWGEDFDAAYRKAEAAGLA 383



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A E S ++A R+GP   ++ +  +
Sbjct: 509 LGAMGLQDVFFKLRLPFDSAEAKALSTRIAERIMLAAYETSADLAERNGPLPAWDQTRAA 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    WAAL+      G++
Sbjct: 569 RGVLHPDHYDVQFTWPERWAALRERVAAVGMR 600


>gi|302558497|ref|ZP_07310839.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302476115|gb|EFL39208.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 796

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/454 (44%), Positives = 288/454 (63%), Gaps = 3/454 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV++DA WSL  
Sbjct: 306 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFS 365

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P    GL D WGE+FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 366 PADVPGLVDLWGEEFDAAYRAAEAQGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 425

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L + 
Sbjct: 426 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDQAAGDLDWERLDET 485

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+N+YP E+A  SN R RP+G+G  GL D+  ++RLPFD  E++ L+ 
Sbjct: 486 VRTAVTFLDRVVDINYYPTEQAGRSNARWRPVGLGAMGLQDVLFRLRLPFDSPEAKALST 545

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R GP   +E +  ++G+L  D +    T    WAAL+ +IA
Sbjct: 546 RIAERIMLAAYETSADLAERSGPLPAWEKTRTARGVLHPDHYDTELTWPERWAALRARIA 605

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 606 AVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLG 665

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L    GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQ+QSLN
Sbjct: 666 VWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQAQSLN 725

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           +++      K+SSM+ H WK GLKT  YYLR++P
Sbjct: 726 LFLETPTIGKLSSMYVHAWKQGLKT-TYYLRSRP 758



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/163 (50%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 597 WAALRARIAAVGMRNSLLLAIAPTATIASIAGAYECIEPQVSNLFKRETLSGEFLQVNSY 656

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L    GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 657 LVEDLKRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTP 716

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           F+DQ+QSLN+++      K+SSM+ H WK GLKT  YYLR++P
Sbjct: 717 FLDQAQSLNLFLETPTIGKLSSMYVHAWKQGLKT-TYYLRSRP 758



 Score =  107 bits (266), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV++DA WSL  
Sbjct: 306 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADAPWSLFS 365

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P    GL D WGE+FD  Y+  EA+GL 
Sbjct: 366 PADVPGLVDLWGEEFDAAYRAAEAQGLA 393



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 50/92 (54%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+  ++RLPFD  E++ L+ +I E I   A E S ++A R GP   +E +  +
Sbjct: 519 LGAMGLQDVLFRLRLPFDSPEAKALSTRIAERIMLAAYETSADLAERSGPLPAWEKTRTA 578

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +    T    WAAL+      G++
Sbjct: 579 RGVLHPDHYDTELTWPERWAALRARIAAVGMR 610


>gi|145596897|ref|YP_001161194.1| ribonucleoside-diphosphate reductase subunit alpha [Salinispora
           tropica CNB-440]
 gi|145306234|gb|ABP56816.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           tropica CNB-440]
          Length = 909

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/513 (41%), Positives = 312/513 (60%), Gaps = 12/513 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    W+PDEFMRRVE+D  WSL+ 
Sbjct: 402 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLID 461

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +GE+FD  Y+   AE K +R V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 462 PSEAPELPDLYGEEFDAAYRV--AEKKAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSN 519

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  +   TI  SNLCTEI+E  +  E AVCNL S+ L  ++  AD   ++ KL+D 
Sbjct: 520 TLSNQTGEPGNTIHLSNLCTEILEVNNDAETAVCNLGSVNLGAHVT-ADGV-DWEKLRDT 577

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP E+A  SN R RP+G+G+ GL D F  +RLPFD  E+  L+ 
Sbjct: 578 VRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELST 637

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I+  ALE S  +A R GP+  Y  +  ++G L  ++WG  P+    WA LK ++ 
Sbjct: 638 RVQEEIFLTALETSAGLAERFGPHPAYAQTRAARGDLHPELWGAVPSQPQRWAGLKARVG 697

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  VN +L+ +L   G
Sbjct: 698 EHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARG 757

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW  +++DQ+    GS+Q +  +P ++++L++T WE+PQ+ ++D+AA R  +IDQSQSLN
Sbjct: 758 LWTASIRDQIKRAEGSVQGLAELPAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLN 817

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++A     K+SSM+ + WK GLKT  YYLR++PA    Q T+  T  A    +  + +Q
Sbjct: 818 LFLAAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQQATVAVTSTAQPGVAVASSAQ 876

Query: 569 EEIQADQEQAMA-----AMICRRDNKEDCIGVQ 596
               A      A     A+ C  +N E C   Q
Sbjct: 877 PGGAASSISGFAGTDAEALACSLENPESCEACQ 909



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 139/230 (60%), Gaps = 6/230 (2%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           ++WG  P+    WA LK ++ +HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 677 ELWGAVPSQPQRWAGLKARVGEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRE 736

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  VN +L+ +L   GLW  +++DQ+    GS+Q +  +P ++++L++T WE+PQ
Sbjct: 737 TMSGEFLQVNTYLVGELKARGLWTASIRDQIKRAEGSVQGLAELPAEVRELFRTAWELPQ 796

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  +IDQSQSLN+++A     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 797 RALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQ 855

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMA-----AMICRRDNKEDC 996
           Q T+  T  A    +  + +Q    A      A     A+ C  +N E C
Sbjct: 856 QATVAVTSTAQPGVAVASSAQPGGAASSISGFAGTDAEALACSLENPESC 905



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/87 (49%), Positives = 58/87 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    W+PDEFMRRVE+D  WSL+ 
Sbjct: 402 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLID 461

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D +GE+FD  Y+  E + +
Sbjct: 462 PSEAPELPDLYGEEFDAAYRVAEKKAV 488



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD  E+  L+ ++ E I+  ALE S  +A R GP+  Y  +  +
Sbjct: 611 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAQTRAA 670

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G L  ++WG  P+    WA LK     +GL+
Sbjct: 671 RGDLHPELWGAVPSQPQRWAGLKARVGEHGLR 702


>gi|386839867|ref|YP_006244925.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           hygroscopicus subsp. jinggangensis 5008]
 gi|374100168|gb|AEY89052.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           hygroscopicus subsp. jinggangensis 5008]
 gi|451793161|gb|AGF63210.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           hygroscopicus subsp. jinggangensis TL01]
          Length = 698

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 307/508 (60%), Gaps = 19/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 208 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 267

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE FD  Y+K EA G   + + AR L+  ++ +  +TG  +M +KDA N
Sbjct: 268 PADVPELVDLWGEDFDAAYRKAEAAGLAKKTIAARDLYGRMMRTLAQTGNGWMTFKDAAN 327

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  +++ A    ++ +L   
Sbjct: 328 RTANQTAEPGNVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFVDAASGDIDWERLDQT 387

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 388 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALST 447

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S ++A R+GP   ++ +  ++G+L  D + V  T    WAAL+E++A
Sbjct: 448 RIAERIMLAAYETSADLAERNGPLPAWDQTRAARGVLHPDHYDVQFTWPERWAALRERVA 507

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RN+L++A  PT++ A I G  E  EP  SN++ R  LSGEF  VN +L++DL  LG
Sbjct: 508 AVGMRNALMLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVQDLKNLG 567

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGSIQD   IP++ + LY+T WEIPQ+ ++DMAA R  ++DQ QSLN
Sbjct: 568 VWDARTREALRDSNGSIQDFPWIPEETRALYRTAWEIPQRGLIDMAAARTPYLDQGQSLN 627

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A  +     Q
Sbjct: 628 LFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARAAQATVPAQQ 676

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                D      A+ C  +N E C   Q
Sbjct: 677 PAPDPD------AIACSLENPESCEACQ 698



 Score =  175 bits (444), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 17/213 (7%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E++A  G+RN+L++A  PT++ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 499 WAALRERVAAVGMRNALMLAIAPTSTIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 558

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L++DL  LG+WD   ++ L  +NGSIQD   IP++ + LY+T WEIPQ+ ++DMAA R  
Sbjct: 559 LVQDLKNLGVWDARTREALRDSNGSIQDFPWIPEETRALYRTAWEIPQRGLIDMAAARTP 618

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQ QSLN++M      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 619 YLDQGQSLNLFMETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPA----------TRIARA 667

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
             +     Q     D      A+ C  +N E C
Sbjct: 668 AQATVPAQQPAPDPD------AIACSLENPESC 694



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +D QWSL  
Sbjct: 208 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADEQWSLFS 267

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE FD  Y+K EA GL 
Sbjct: 268 PADVPELVDLWGEDFDAAYRKAEAAGLA 295



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A E S ++A R+GP   ++ +  +
Sbjct: 421 LGAMGLQDVFFKLRLPFDSAEAKALSTRIAERIMLAAYETSADLAERNGPLPAWDQTRAA 480

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    WAAL+      G++
Sbjct: 481 RGVLHPDHYDVQFTWPERWAALRERVAAVGMR 512


>gi|365866749|ref|ZP_09406353.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces sp. W007]
 gi|364003828|gb|EHM24964.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces sp. W007]
          Length = 773

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 309/508 (60%), Gaps = 14/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 278 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 337

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG+ FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 338 PADVPELVDLWGDAFDAAYRAAEAKGLARRTIPARELYGRMMRTLAQTGQGWMTFKDASN 397

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++  AD + ++ +L   
Sbjct: 398 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--ADGSIDWDRLDAT 455

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 456 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 515

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R GP   +  +  ++G+L  D +         W AL+ +IA
Sbjct: 516 RISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYATELNWPERWDALRARIA 575

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 576 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKQLG 635

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 636 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 695

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +  + A + 
Sbjct: 696 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQASAAAPIPVQQASAP 754

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +   AD      A+ C  +N E C   Q
Sbjct: 755 D---AD------AIACSLENPESCEACQ 773



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/164 (49%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IAK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 567 WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 626

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 627 LVDELKQLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 686

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 687 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 729



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 278 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 337

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG+ FD  Y+  EA+GL 
Sbjct: 338 PADVPELVDLWGDAFDAAYRAAEAKGLA 365



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 489 LGAMGLQDVFFQLRLPFDSPEARALSTRISERIMLAAYEASCDLAERSGPLPAWSETRAA 548

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +         W AL+      G++
Sbjct: 549 RGVLHPDHYATELNWPERWDALRARIAKTGMR 580


>gi|329939693|ref|ZP_08288994.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
 gi|329301263|gb|EGG45158.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           griseoaurantiacus M045]
          Length = 811

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/465 (44%), Positives = 294/465 (63%), Gaps = 16/465 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DAQWSL  
Sbjct: 304 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFS 363

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+   GL+D WG +FD  Y+  EAEG  +R +PAR+L+  ++ +   TGT +M +KD  N
Sbjct: 364 PSDVPGLTDLWGAEFDAAYRAAEAEGLAVRTLPARELYGRMMRTLASTGTGWMTFKDTAN 423

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--------- 259
           R +NQ  +    I  SNLCTEI+E T   E AVCNL SI L  ++   +           
Sbjct: 424 RTANQTAEPGNVIHSSNLCTEILEVTEDGETAVCNLGSINLGAFVREGNTADAGTADAGA 483

Query: 260 ----YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
                ++ +L    +     L+++ID+NFYP EEA  SN R RP+G+GV GL D+  ++R
Sbjct: 484 ADGGIDWERLDATVRTAVTFLDRVIDLNFYPTEEAGRSNARWRPVGLGVMGLQDVLFRLR 543

Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 375
           LPFD  E+R L+ +I E +   A E S E+AAR+GP   +E +  ++G+L  D + V  +
Sbjct: 544 LPFDSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTARGVLHPDHYDVELS 603

Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
               WAAL+ +IA  G+RN+LL+A  PTA+ A I G +E  EP  SN++ R  LSGEF  
Sbjct: 604 WPERWAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRETLSGEFLQ 663

Query: 436 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
           VN +L+ DL  LG WD + ++ L   NGS++ +  +P++++ LY+T WE+PQ+ ++DMAA
Sbjct: 664 VNPYLVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQRALIDMAA 723

Query: 496 DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
            R  F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR+
Sbjct: 724 ARTPFLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRS 767



 Score =  163 bits (413), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 112/161 (69%), Gaps = 1/161 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RN+LL+A  PTA+ A I G +E  EP  SN++ R  LSGEF  VN +
Sbjct: 608 WAALRRRIAVTGMRNALLLAIAPTATIASIAGVHECVEPQVSNLFKRETLSGEFLQVNPY 667

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG WD + ++ L   NGS++ +  +P++++ LY+T WE+PQ+ ++DMAA R  
Sbjct: 668 LVADLKRLGRWDADTREALREANGSVEGLTWLPEEVRRLYRTAWELPQRALIDMAAARTP 727

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
           F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR+
Sbjct: 728 FLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRS 767



 Score =  113 bits (282), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 62/88 (70%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DAQWSL  
Sbjct: 304 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFS 363

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+   GL+D WG +FD  Y+  EAEGL 
Sbjct: 364 PSDVPGLTDLWGAEFDAAYRAAEAEGLA 391



 Score = 70.1 bits (170), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+  ++RLPFD  E+R L+ +I E +   A E S E+AAR+GP   +E +  +
Sbjct: 530 LGVMGLQDVLFRLRLPFDSPEARALSARIAERLMLTAYETSAELAARNGPLPAWERTRTA 589

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  +    WAAL+    V G++
Sbjct: 590 RGVLHPDHYDVELSWPERWAALRRRIAVTGMR 621


>gi|345001979|ref|YP_004804833.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           sp. SirexAA-E]
 gi|344317605|gb|AEN12293.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SirexAA-E]
          Length = 803

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/508 (41%), Positives = 309/508 (60%), Gaps = 15/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WG+ FD  Y+  EA G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 369 PADVPELTDLWGDAFDAAYRAAEARGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASN 428

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++    + ++ +L   
Sbjct: 429 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVS--GGSIDWERLDAT 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 487 VRTAVTFLDRVVDINFYPTEQAGTSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R GP   +  +  ++G+L  D +         W AL+ +IA
Sbjct: 547 RISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYATELNWPERWDALRARIA 606

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 607 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKKLG 666

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 667 VWDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 726

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A + + A + 
Sbjct: 727 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAASGRTASAA 775

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
              Q  Q     A+ C  +N E C   Q
Sbjct: 776 LPAQQAQAPDADAIACSLENPESCEACQ 803



 Score =  172 bits (437), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 11/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IAK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 598 WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGY 657

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 658 LVEELKKLGVWDARTREALREASGSVQGFGWIPEDVRALYRTAWEIPQRGLIDMAAARTP 717

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 718 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA 766

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            + +   +    Q  Q     A+ C  +N E C
Sbjct: 767 ASGRTASAALPAQQAQAPDADAIACSLENPESC 799



 Score =  103 bits (258), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WG+ FD  Y+  EA GL 
Sbjct: 369 PADVPELTDLWGDAFDAAYRAAEARGLA 396



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 520 LGAMGLQDVFFQLRLPFDSPEARALSTRISERIMLAAYEASCDLAERSGPLPAWSETRAA 579

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +         W AL+      G++
Sbjct: 580 RGVLHPDHYATELNWPERWDALRARIAKTGMR 611


>gi|254384640|ref|ZP_04999979.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
 gi|194343524|gb|EDX24490.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces sp.
           Mg1]
          Length = 797

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/508 (41%), Positives = 310/508 (61%), Gaps = 17/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    W+PDEFMRRV +DA WSL  
Sbjct: 305 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFS 364

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG+ FD  Y+K EA+G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 365 PADVPELVDLWGDDFDAAYRKAEADGLARKTMPARDLYGRMMRTLAQTGQGWMTFKDASN 424

Query: 211 RKSNQQ-NLGTI-KCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ    GT+   SNLCTEI+E T+  E AVCNL S+ L  ++       ++ +L + 
Sbjct: 425 RTANQTAEPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFVLTETGEIDWERLDET 484

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F +++LPFD  E++ L+ 
Sbjct: 485 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLKLPFDSPEAKALST 544

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I   A EASC++A R GP   +E +  ++G+L  D +         W AL+ ++A
Sbjct: 545 KLSERIMLAAYEASCDLAERSGPLPAWEQTRTARGVLHPDHYDTELNWPERWDALRARVA 604

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 605 ESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEELKKLG 664

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    IP ++++LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 665 VWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 724

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          TK+A A  +    + 
Sbjct: 725 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TKIARAAQAATPVAL 773

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            +   D E    A+ C  +N E C   Q
Sbjct: 774 PQAVVDAE----ALACSLENPESCEACQ 797



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/213 (42%), Positives = 131/213 (61%), Gaps = 15/213 (7%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 596 WDALRARVAESGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGY 655

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP ++++LY+T WEIPQ+ ++DMAA R  
Sbjct: 656 LVEELKKLGVWDAQSREALREASGSVQGFGWIPAEVRELYRTAWEIPQRGLIDMAAARTP 715

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          TK+A A
Sbjct: 716 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TKIARA 764

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
             +    +  +   D E    A+ C  +N E C
Sbjct: 765 AQAATPVALPQAVVDAE----ALACSLENPESC 793



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    W+PDEFMRRV +DA WSL  
Sbjct: 305 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWVPDEFMRRVNADADWSLFS 364

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG+ FD  Y+K EA+GL 
Sbjct: 365 PADVPELVDLWGDDFDAAYRKAEADGLA 392



 Score = 62.8 bits (151), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F +++LPFD  E++ L+ ++ E I   A EASC++A R GP   +E +  +
Sbjct: 518 LGAMGLQDVFFKLKLPFDSPEAKALSTKLSERIMLAAYEASCDLAERSGPLPAWEQTRTA 577

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +         W AL+      G++
Sbjct: 578 RGVLHPDHYDTELNWPERWDALRARVAESGMR 609


>gi|357411277|ref|YP_004923013.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           flavogriseus ATCC 33331]
 gi|320008646|gb|ADW03496.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           flavogriseus ATCC 33331]
          Length = 797

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 312/511 (61%), Gaps = 21/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D QWSL  
Sbjct: 303 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWSLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 363 PADAPELVDLWGDEFDAAYRAAEAKGLARRTLPARELYGRMMRTLAQTGQGWMTFKDASN 422

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++  A+ T ++ +L   
Sbjct: 423 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--AEGTIDWERLDAT 480

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 481 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 540

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-WD--WAALKE 385
           +I E I   A EASC++A R GP   +  +  ++G+L  D +    T+L W   W AL+ 
Sbjct: 541 KISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYD---TELHWPERWDALRA 597

Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
           ++A+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L 
Sbjct: 598 RVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELK 657

Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
           +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQ
Sbjct: 658 KLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQ 717

Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
           SLN+++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +     
Sbjct: 718 SLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQAPAAATV----- 771

Query: 566 RSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
                +QA    A  A+ C  +N E C   Q
Sbjct: 772 ----PVQASAPDA-DALACSLENPESCEACQ 797



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 13/214 (6%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 592 WDALRARVARTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 651

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 652 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 711

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 712 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA 760

Query: 964 MASKDTRSQE-EIQADQEQAMAAMICRRDNKEDC 996
            + +   +    +QA    A  A+ C  +N E C
Sbjct: 761 ASGQAPAAATVPVQASAPDA-DALACSLENPESC 793



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D QWSL  
Sbjct: 303 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTQWSLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG++FD  Y+  EA+GL 
Sbjct: 363 PADAPELVDLWGDEFDAAYRAAEAKGLA 390



 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 514 LGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAA 573

Query: 653 QGILQYDMW 661
           +G+L  D +
Sbjct: 574 RGVLHPDHY 582


>gi|411004497|ref|ZP_11380826.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           globisporus C-1027]
          Length = 807

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 312/508 (61%), Gaps = 14/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 372 PADVPELVDLWGDEFDAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASN 431

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  ++  A+ + ++ +L   
Sbjct: 432 RTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFV--ANGSIDWDRLDST 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A NSN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 490 VRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R GP   +  +  ++G+L  D +         W AL+ ++A
Sbjct: 550 KISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYATELNWPERWDALRARVA 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 610 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 670 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +  + A + 
Sbjct: 730 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQASAAAPIPVQQASAP 788

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +   AD      A+ C  +N E C   Q
Sbjct: 789 D---AD------AIACSLENPESCEACQ 807



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 601 WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 660

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 661 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 720

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 721 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 763



 Score =  103 bits (257), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 60/88 (68%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG++FD  Y+  EA+GL 
Sbjct: 372 PADVPELVDLWGDEFDAAYRAAEAKGLA 399



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 523 LGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +         W AL+      G++
Sbjct: 583 RGVLHPDHYATELNWPERWDALRARVAKTGMR 614


>gi|302536806|ref|ZP_07289148.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
 gi|302445701|gb|EFL17517.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. C]
          Length = 798

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/508 (42%), Positives = 310/508 (61%), Gaps = 13/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 302 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVNADADWSLFS 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +G++FD  Y K EA G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 362 PADVPELVDLYGDEFDAAYVKAEAAGLAKKTMPARDLYGRMMRTLAQTGQGWMTFKDASN 421

Query: 211 RKSNQQNL-GTI-KCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L GT+   SNLCTEI+E T+  E AVCNL S+ L  ++  AD   ++ +L + 
Sbjct: 422 RTANQTALPGTVVHSSNLCTEIIEVTNDGETAVCNLGSVNLGAFV--ADGEMDWARLDET 479

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 480 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFKLRLPFDSAEAKALST 539

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R GP   +  +  +QG+L  D +         W AL+ +IA
Sbjct: 540 KISERIMLAAYEASCDLAERSGPLPAWAETRTAQGVLHPDHYETERHWPERWDALRARIA 599

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 600 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGYLVEDLKQLG 659

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  ++GS+Q    IP ++++LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 660 VWDAQTREALRESSGSVQGFGWIPAEIRELYRTAWEIPQRGLIDMAAARTPYLDQSQSLN 719

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA         K   A + A+    + 
Sbjct: 720 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPAT--------KIARAASGAAAVPAAA 770

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
              Q  Q     A+ C  +N E C   Q
Sbjct: 771 TPAQLPQALDAEALACSLENPESCEACQ 798



 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/213 (42%), Positives = 130/213 (61%), Gaps = 9/213 (4%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IAK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 591 WDALRARIAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNGY 650

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L  ++GS+Q    IP ++++LY+T WEIPQ+ ++DMAA R  
Sbjct: 651 LVEDLKQLGVWDAQTREALRESSGSVQGFGWIPAEIRELYRTAWEIPQRGLIDMAAARTP 710

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA         K   A +
Sbjct: 711 YLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPAT--------KIARAAS 761

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A+    +    Q  Q     A+ C  +N E C
Sbjct: 762 GAAAVPAAATPAQLPQALDAEALACSLENPESC 794



 Score = 99.8 bits (247), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 302 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVNADADWSLFS 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D +G++FD  Y K EA GL 
Sbjct: 362 PADVPELVDLYGDEFDAAYVKAEAAGLA 389



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 513 LGAMGLQDVFFKLRLPFDSAEAKALSTKISERIMLAAYEASCDLAERSGPLPAWAETRTA 572

Query: 653 QGILQYDMW 661
           QG+L  D +
Sbjct: 573 QGVLHPDHY 581


>gi|149916692|ref|ZP_01905194.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
 gi|149822409|gb|EDM81798.1| ribonucleoside-diphosphate reductase, alpha subunit [Plesiocystis
           pacifica SIR-1]
          Length = 792

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/515 (42%), Positives = 308/515 (59%), Gaps = 26/515 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG E  RA +L    WIPDEFMRRV +D  WSL  
Sbjct: 295 RKGACCVYLETWHADLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFD 354

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P T R   D +GE F   Y + E  G  +  +PAR+L+  ++ +  +TG  +M +KD CN
Sbjct: 355 PKTVRHFPDLYGEAFTRAYVEAERAGLAVATLPARELYARMMRTLAQTGNGWMCFKDRCN 414

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-------ADKTYN 261
              NQ      T+  SNLCTEIVE TS +E AVCNL SI L  ++ P       AD   +
Sbjct: 415 STCNQTARPGRTVHLSNLCTEIVEVTSPEETAVCNLGSINLGHHLRPIDGGGTQADWEVD 474

Query: 262 FTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN 321
           + KL     +  + L+++ID+NFYP+E A  SN R RP+G+G  GL DL +++ L FD  
Sbjct: 475 WAKLGRSVTLAVRALDRVIDLNFYPLETAAKSNARWRPVGLGTMGLHDLLLRLGLDFDSP 534

Query: 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWA 381
            +R L +++ E +Y+ AL  SC++A + GP+  +  +  + G LQ+D+WGV P +   W 
Sbjct: 535 AARELARRVAEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFDLWGVEPGEDLPWD 594

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
            L+  +A HG+RNSLL+A  PTA+ A I G  E  EP  SN+  R  LSGEF  VN +L+
Sbjct: 595 TLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLVKRETLSGEFIQVNRYLI 654

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
            +L  LGLWD+ M+  L  +NGS+Q I  +P+ L+  ++T WE+P + ++DMAA RG FI
Sbjct: 655 DELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWELPMRALIDMAAARGPFI 714

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           DQSQSLN+++   +  ++S+M+F+ WK GLKT  YYLR++PA+   + T+D      A A
Sbjct: 715 DQSQSLNLFVESPDLTRLSAMYFYAWKAGLKT-TYYLRSRPASGIAKATVDP-----ANA 768

Query: 562 SKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               RS E           A+ C  +N E C   Q
Sbjct: 769 KPKQRSAE-----------ALACSLENPEACEACQ 792



 Score =  196 bits (499), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            ++D+WGV P +   W  L+  +A HG+RNSLL+A  PTA+ A I G  E  EP  SN+ 
Sbjct: 578 LQFDLWGVEPGEDLPWDTLRRDVASHGLRNSLLVAVAPTATIASIAGCYECIEPAVSNLV 637

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            R  LSGEF  VN +L+ +L  LGLWD+ M+  L  +NGS+Q I  +P+ L+  ++T WE
Sbjct: 638 KRETLSGEFIQVNRYLIDELRRLGLWDEAMRAALKRDNGSVQGIARVPEALRRRFRTAWE 697

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           +P + ++DMAA RG FIDQSQSLN+++   +  ++S+M+F+ WK GLKT  YYLR++PA+
Sbjct: 698 LPMRALIDMAAARGPFIDQSQSLNLFVESPDLTRLSAMYFYAWKAGLKT-TYYLRSRPAS 756

Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICR 989
              + T+D      A A    RS E +    E   A   C+
Sbjct: 757 GIAKATVDP-----ANAKPKQRSAEALACSLENPEACEACQ 792



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 52/88 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG E  RA +L    WIPDEFMRRV +D  WSL  
Sbjct: 295 RKGACCVYLETWHADLPEFLELRDNTGNEYARAHNLNLANWIPDEFMRRVAADEGWSLFD 354

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P   R   D +GE F   Y + E  GL 
Sbjct: 355 PKTVRHFPDLYGEAFTRAYVEAERAGLA 382



 Score = 59.3 bits (142), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%)

Query: 609 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 668
           FD   +R L +++ E +Y+ AL  SC++A + GP+  +  +  + G LQ+D+WGV P + 
Sbjct: 531 FDSPAARELARRVAEHVYFHALRTSCDLARQHGPHPAFPETRAADGQLQFDLWGVEPGED 590

Query: 669 WDWAALKVLALVYGLK 684
             W  L+     +GL+
Sbjct: 591 LPWDTLRRDVASHGLR 606


>gi|182436092|ref|YP_001823811.1| ribonucleoside-diphosphate reductase large subunit [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178464608|dbj|BAG19128.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces griseus subsp. griseus NBRC 13350]
          Length = 804

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/510 (41%), Positives = 312/510 (61%), Gaps = 18/510 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG+ FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 369 PADVPELVDLWGDAFDAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASN 428

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++  A+ + ++ +L   
Sbjct: 429 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--ANGSIDWDRLDST 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A NSN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 487 VRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT--DLWDWAALKEK 386
           +I E I   A EASC++A R GP   +  +  ++G+L  D +       D WD  AL+ +
Sbjct: 547 KISERIMLAAYEASCDLAERSGPLPAWSKTRAARGVLHPDHYATELNWPDRWD--ALRAR 604

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +
Sbjct: 605 VAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKK 664

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQS
Sbjct: 665 LGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQS 724

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +  + A 
Sbjct: 725 LNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQASAAAPLPVQQAS 783

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           + +   AD      A+ C  +N E C   Q
Sbjct: 784 APD---AD------AIACSLENPESCEACQ 804



 Score =  167 bits (423), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 598 WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 657

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 658 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 717

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 718 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 760



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG+ FD  Y+  EA+GL 
Sbjct: 369 PADVPELVDLWGDAFDAAYRAAEAKGLA 396



 Score = 67.8 bits (164), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 520 LGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSKTRAA 579

Query: 653 QGILQYDMWGVTPT--DLWDWAALKVLALVYGLK 684
           +G+L  D +       D WD  AL+      G++
Sbjct: 580 RGVLHPDHYATELNWPDRWD--ALRARVAKTGMR 611


>gi|239990629|ref|ZP_04711293.1| putative ribonucleoside-diphosphate reductase large subunit
           [Streptomyces roseosporus NRRL 11379]
 gi|291447644|ref|ZP_06587034.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
 gi|291350591|gb|EFE77495.1| ribonucleotide-diphosphate reductase large chain [Streptomyces
           roseosporus NRRL 15998]
          Length = 807

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 311/508 (61%), Gaps = 14/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG+ FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 372 PADVPELVDLWGDAFDAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASN 431

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T+  E AVCNL S+ L  ++  A+ + ++ +L   
Sbjct: 432 RTANQTAEPGRVVHSSNLCTEILEVTNDGETAVCNLGSVNLGAFV--ANGSIDWDRLDST 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A NSN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 490 VRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R GP   +  +  ++G+L  D +         W AL+ ++A
Sbjct: 550 KISERIMLAAYEASCDLAERSGPLPAWSETRAARGVLHPDHYDTELNWPERWDALRARVA 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 610 KTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKKLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 670 VWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +  + A + 
Sbjct: 730 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQASAAAPIPVQQASAP 788

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +   AD      A+ C  +N E C   Q
Sbjct: 789 D---AD------AIACSLENPESCEACQ 807



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 601 WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 660

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 661 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 720

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 721 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 763



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG+ FD  Y+  EA+GL 
Sbjct: 372 PADVPELVDLWGDAFDAAYRAAEAKGLA 399



 Score = 66.6 bits (161), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 523 LGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSETRAA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +         W AL+      G++
Sbjct: 583 RGVLHPDHYDTELNWPERWDALRARVAKTGMR 614


>gi|357391821|ref|YP_004906662.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Kitasatospora setae KM-6054]
 gi|311898298|dbj|BAJ30706.1| putative ribonucleoside-diphosphate reductase subunit alpha
           [Kitasatospora setae KM-6054]
          Length = 804

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/515 (42%), Positives = 306/515 (59%), Gaps = 17/515 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRV ++A WSL  
Sbjct: 298 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG  FD+ Y K E  GK +R +PA+ L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PADVPELVDLWGADFDEAYVKAELAGKAVRTIPAQTLYARMMRTLAQTGNGWMTFKDASN 417

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFT----- 263
           R +NQ  L   T+  SNLCTEI+E T   E AVCNL S+ L  ++ P     +       
Sbjct: 418 RAANQTALPGRTVHSSNLCTEILEVTDDSETAVCNLGSVNLGAHVAPGATAADLLNAMDW 477

Query: 264 -KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            +L    +     L+++ID+NFYP  EA  SN R RP+G+GV GL D+F Q+R+ FD  E
Sbjct: 478 DRLDATVRTAVTFLDRVIDINFYPTTEAGTSNSRWRPVGLGVMGLQDVFFQLRIDFDSAE 537

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-PTDLWDWA 381
           +  L+  I E I   A E S ++A R G ++ Y  +  ++G L  D +G   P     W 
Sbjct: 538 AVALSTLIAERIMLTAYERSADLAERFGRHEAYGETRAARGQLHVDHFGAANPQWTERWD 597

Query: 382 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
           AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+
Sbjct: 598 ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNPYLV 657

Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
           R+L ELG+WD   +D L   NGSIQ+   +PQ+++ LY+T WE+PQ+ ++D+AA R  +I
Sbjct: 658 RELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRSLYRTAWELPQRALIDLAAARQPYI 717

Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMA 561
           DQSQSLN++MA     K+SSM+ + WK+GLKT  YYLR++PA    Q      + A  + 
Sbjct: 718 DQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKT-TYYLRSRPATRIAQAAPGAARTAAPVP 776

Query: 562 SKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               ++    QA+Q+    A+ C  +N E C   Q
Sbjct: 777 ---VQTPTLSQAEQD----AIACSLENPESCEACQ 804



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 100/235 (42%), Positives = 144/235 (61%), Gaps = 14/235 (5%)

Query: 762 FNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 821
            + + FG     W    T+ WD  AL+ +IA+ G+RNSLL+A  PTA+ A I G  E  E
Sbjct: 580 LHVDHFGAANPQW----TERWD--ALRARIAEVGLRNSLLLAIAPTATIASIAGVYECIE 633

Query: 822 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 881
           P  SN++ R  LSGEF  VN +L+R+L ELG+WD   +D L   NGSIQ+   +PQ+++ 
Sbjct: 634 PQVSNLFKRETLSGEFLQVNPYLVRELKELGVWDQQTRDALRDANGSIQEFNWLPQEVRS 693

Query: 882 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYY 941
           LY+T WE+PQ+ ++D+AA R  +IDQSQSLN++MA     K+SSM+ + WK+GLKT  YY
Sbjct: 694 LYRTAWELPQRALIDLAAARQPYIDQSQSLNLFMAAPTIGKLSSMYSYAWKVGLKT-TYY 752

Query: 942 LRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           LR++PA    Q      + A  +     ++    QA+Q+    A+ C  +N E C
Sbjct: 753 LRSRPATRIAQAAPGAARTAAPVP---VQTPTLSQAEQD----AIACSLENPESC 800



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRV ++A WSL  
Sbjct: 298 RKGAACVYLETWHADIEEFLELRDNTGEEARRTHNLNLAHWIPDEFMRRVNANADWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D WG  FD+ Y K E  G
Sbjct: 358 PADVPELVDLWGADFDEAYVKAELAG 383



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+F Q+R+ FD  E+  L+  I E I   A E S ++A R G ++ Y  +  +
Sbjct: 517 LGVMGLQDVFFQLRIDFDSAEAVALSTLIAERIMLTAYERSADLAERFGRHEAYGETRAA 576

Query: 653 QGILQYDMWGVT-PTDLWDWAALKVLALVYGLK 684
           +G L  D +G   P     W AL+      GL+
Sbjct: 577 RGQLHVDHFGAANPQWTERWDALRARIAEVGLR 609


>gi|326776717|ref|ZP_08235982.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseus XylebKG-1]
 gi|326657050|gb|EGE41896.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           griseus XylebKG-1]
          Length = 804

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/510 (41%), Positives = 312/510 (61%), Gaps = 18/510 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG+ FD  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 369 PADVPELVDLWGDAFDAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDASN 428

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++  A+ + ++ +L   
Sbjct: 429 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--ANGSIDWDRLDAT 486

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A NSN R RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 487 VRTAVTFLDRVVDINFYPTEQAGNSNSRWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 546

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT--DLWDWAALKEK 386
           +I E I   A EASC++A R GP   +  +  ++G+L  D +       D WD  AL+ +
Sbjct: 547 KISERIMLAAYEASCDLAERSGPLPAWSRTRAARGVLHPDHYATELNWPDRWD--ALRAR 604

Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
           +AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +
Sbjct: 605 VAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKK 664

Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
           LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQSQS
Sbjct: 665 LGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTPFLDQSQS 724

Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
           LN+++      K+SSM+ + WK GLKT  YYLR++PA    +    +   A  +  + A 
Sbjct: 725 LNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAASGQASAAAPLPVQQAS 783

Query: 567 SQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           + +   AD      A+ C  +N E C   Q
Sbjct: 784 APD---AD------AIACSLENPESCEACQ 804



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 113/164 (68%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++AK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 598 WDALRARVAKTGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 657

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L   +GS+Q    IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 658 LVDELKKLGVWDARTREALREASGSVQGFAWIPEDVRALYRTAWEIPQRGLIDMAAARTP 717

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 718 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 760



 Score =  102 bits (255), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R  +L    WIPDEFMRRV++D +WSL  
Sbjct: 309 RKGAAAVYLETWHADIEEFLELRDNTGEDQRRTHNLNLAHWIPDEFMRRVDADTEWSLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG+ FD  Y+  EA+GL 
Sbjct: 369 PADVPELVDLWGDAFDAAYRAAEAKGLA 396



 Score = 67.4 bits (163), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E I   A EASC++A R GP   +  +  +
Sbjct: 520 LGAMGLQDVFFQLRLPFDSPEARALSTKISERIMLAAYEASCDLAERSGPLPAWSRTRAA 579

Query: 653 QGILQYDMWGVTPT--DLWDWAALKVLALVYGLK 684
           +G+L  D +       D WD  AL+      G++
Sbjct: 580 RGVLHPDHYATELNWPDRWD--ALRARVAKTGMR 611


>gi|408680595|ref|YP_006880422.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Streptomyces venezuelae ATCC 10712]
 gi|328884924|emb|CCA58163.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Streptomyces venezuelae ATCC 10712]
          Length = 792

 Score =  414 bits (1064), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/454 (45%), Positives = 292/454 (64%), Gaps = 5/454 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 298 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+K EA G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PADVPELVDLWGEEFDAAYRKAEAAGLARKTMPARDLYGRMMRTLAQTGNGWMTFKDASN 417

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +   T+  SNLCTEI+E T   E AVCNL S+ L  ++  +D   ++ +L   
Sbjct: 418 RTANQTAEPGHTVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVVGSD--IDWERLDAT 475

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q++LPFD  E+R L+ 
Sbjct: 476 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFQLKLPFDSAEARALST 535

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  ++G+L  D + V       WAAL+E+IA
Sbjct: 536 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYDVELNWPERWAALRERIA 595

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 596 AVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKKLG 655

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  +NGS+     +P ++++LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 656 VWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 715

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
           +++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 716 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 748



 Score =  169 bits (429), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 80/163 (49%), Positives = 114/163 (69%), Gaps = 1/163 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 587 WAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 646

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L  +NGS+     +P ++++LY+T WEIPQ+ ++DMAA R  
Sbjct: 647 LVDELKKLGVWDAQTREALRESNGSVAGFTWVPAEVRELYRTAWEIPQRGLIDMAAARTP 706

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++P
Sbjct: 707 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRP 748



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/88 (55%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 298 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y+K EA GL 
Sbjct: 358 PADVPELVDLWGEEFDAAYRKAEAAGLA 385



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q++LPFD  E+R L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 509 LGAMGLQDVFFQLKLPFDSAEARALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 568

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V       WAAL+      G++
Sbjct: 569 RGVLHPDHYDVELNWPERWAALRERIAAVGMR 600


>gi|159040365|ref|YP_001539618.1| ribonucleoside-diphosphate reductase subunit alpha [Salinispora
           arenicola CNS-205]
 gi|157919200|gb|ABW00628.1| ribonucleoside-diphosphate reductase, alpha subunit [Salinispora
           arenicola CNS-205]
          Length = 821

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/520 (41%), Positives = 310/520 (59%), Gaps = 19/520 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    W+PDEFMRRVE+D  WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLID 366

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +G++FD  Y+   AE K +R V AR L+  ++ +  +TG  +M +KD  N
Sbjct: 367 PSDAPELPDLYGDEFDAAYRV--AEKKAVRTVKARDLYGRMMRTLAQTGNGWMTFKDRSN 424

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ  Q   TI  SNLCTEI+E  +  E AVCNL S+ L  ++       ++ KL+  
Sbjct: 425 TLSNQTGQPANTIHLSNLCTEILEVNNDTETAVCNLGSVNLGAHVTV--DGVDWEKLRAT 482

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP E+A  SN R RP+G+G+ GL D F  +RLPFD  E+  L+ 
Sbjct: 483 VRTAVVFLDRVIDINYYPAEQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEASELST 542

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I+  ALE S  +A R GP+  Y  +  ++G L  D+WG TPT    WA LK +IA
Sbjct: 543 RVQEEIFLTALETSAGLAERFGPHPAYAETRAARGDLHPDLWGATPTQTRRWAGLKARIA 602

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           +HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  VN +L+ +L   G
Sbjct: 603 EHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQVNTYLVGELKARG 662

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   ++DQ+    GS+Q +  +P ++++L++T WE+PQ+ ++D+AA R  +IDQSQSLN
Sbjct: 663 LWTAQIRDQIRRAEGSVQGLGELPAEVRELFRTAWELPQRALIDLAAARAPYIDQSQSLN 722

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++A     K+SSM+ + WK GLKT  YYLR++PA    Q T+  T       +  + +Q
Sbjct: 723 LFLAAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQQATVAVTPTVPPGVADASSAQ 781

Query: 569 EEIQADQEQAMA------------AMICRRDNKEDCIGVQ 596
             +      A A            A+ C  +N E C   Q
Sbjct: 782 PGVAPGLSGAAASSASGVAGTDAEALACSLENPESCEACQ 821



 Score =  190 bits (483), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/237 (40%), Positives = 140/237 (59%), Gaps = 13/237 (5%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D+WG TPT    WA LK +IA+HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 582 DLWGATPTQTRRWAGLKARIAEHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRE 641

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  VN +L+ +L   GLW   ++DQ+    GS+Q +  +P ++++L++T WE+PQ
Sbjct: 642 TMSGEFLQVNTYLVGELKARGLWTAQIRDQIRRAEGSVQGLGELPAEVRELFRTAWELPQ 701

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  +IDQSQSLN+++A     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 702 RALIDLAAARAPYIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKT-TYYLRSRPATRIQ 760

Query: 952 QFTIDKTKMANAMASKDTRSQEEIQADQEQAMA------------AMICRRDNKEDC 996
           Q T+  T       +  + +Q  +      A A            A+ C  +N E C
Sbjct: 761 QATVAVTPTVPPGVADASSAQPGVAPGLSGAAASSASGVAGTDAEALACSLENPESC 817



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG++  R  +L    W+PDEFMRRVE+D  WSL+ 
Sbjct: 307 RKGAACVYLEPWHPDIEEFLELRDNTGEDARRTHNLNLANWLPDEFMRRVEADGDWSLID 366

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D +G++FD  Y+  E + +
Sbjct: 367 PSDAPELPDLYGDEFDAAYRVAEKKAV 393



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD  E+  L+ ++ E I+  ALE S  +A R GP+  Y  +  +
Sbjct: 516 LGLMGLQDAFFTLRLPFDSAEASELSTRVQEEIFLTALETSAGLAERFGPHPAYAETRAA 575

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G L  D+WG TPT    WA LK     +GL+
Sbjct: 576 RGDLHPDLWGATPTQTRRWAGLKARIAEHGLR 607


>gi|297192179|ref|ZP_06909577.1| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151244|gb|EDY64084.2| class Ia ribonucleotide-diphosphate reductase large subunit protein
           [Streptomyces pristinaespiralis ATCC 25486]
          Length = 800

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 305/508 (60%), Gaps = 21/508 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DAQWSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFS 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE FD  Y++ EA G   R V AR L+  ++ +  +TG  +M +KDA N
Sbjct: 372 PVDVPELVDLWGEDFDAAYRRAEAAGLARRTVSARDLYGRMMRTLAQTGNGWMTFKDASN 431

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++      ++ +L   
Sbjct: 432 RTANQTAEPGRVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVS--GDGIDWERLDAT 489

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD  E+R L+ 
Sbjct: 490 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSAEARALST 549

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EASC++A R+GP   +  +  ++G+L  D +  T      W AL+ ++A
Sbjct: 550 RIAERIMLAAYEASCDLAERNGPLPAWAETRTARGVLHPDHYDTTLNWPERWEALRARVA 609

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 610 AVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDDLKRLG 669

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+Q    +P++++ LY+T WEIPQ+ ++DMAA R  F+DQSQSLN
Sbjct: 670 VWDAQTREALREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTPFLDQSQSLN 729

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA          T++A A ++      
Sbjct: 730 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARAASAAVPVPA 778

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +    D      A+ C  +N E C   Q
Sbjct: 779 QVTPED------AVACSLENPESCEACQ 800



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 128/213 (60%), Gaps = 17/213 (7%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ ++A  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 601 WEALRARVAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 660

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L   +GS+Q    +P++++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 661 LVDDLKRLGVWDAQTREALREASGSVQGFTWVPEEIRALYRTAWEIPQRGLIDMAAARTP 720

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQSQSLN+++      K+SSM+ + WK GLKT  YYLR++PA          T++A A
Sbjct: 721 FLDQSQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA----------TRIARA 769

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            ++      +    D      A+ C  +N E C
Sbjct: 770 ASAAVPVPAQVTPED------AVACSLENPESC 796



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRVE+DAQWSL  
Sbjct: 312 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVEADAQWSLFS 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE FD  Y++ EA GL 
Sbjct: 372 PVDVPELVDLWGEDFDAAYRRAEAAGLA 399



 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E+R L+ +I E I   A EASC++A R+GP   +  +  +
Sbjct: 523 LGAMGLQDVFFKLRLPFDSAEARALSTRIAERIMLAAYEASCDLAERNGPLPAWAETRTA 582

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +  T      W AL+      G++
Sbjct: 583 RGVLHPDHYDTTLNWPERWEALRARVAAVGMR 614


>gi|295836583|ref|ZP_06823516.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
 gi|197697283|gb|EDY44216.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. SPB74]
          Length = 790

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/455 (44%), Positives = 291/455 (63%), Gaps = 5/455 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +D +WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D WGE+F+  Y+  EA+G   + +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLARKTMPARELYGRMMRTLAQTGQGWMTFKDHSN 415

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL SI L  ++   +   ++ +L + 
Sbjct: 416 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSINLGAFVE--NGEIDWERLDET 473

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP  +A NSN R RP+G+G  GL D+F ++RLPFD   ++ ++ 
Sbjct: 474 VRTAVTFLDRVVDINFYPTGQAANSNARWRPVGLGAMGLQDVFFKLRLPFDSAAAKAVST 533

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A + GP   +E +  ++G+L  D + V  T    W AL+ +IA
Sbjct: 534 RIAERIMLAAYEASADLAEKHGPVPAWEKTRTARGVLHPDHFDVERTWPERWEALRARIA 593

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           K G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL +LG
Sbjct: 594 KTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGYLVEDLKKLG 653

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   NGS+Q    IP+ ++ LY+T WE+PQ+ ++DMAA+R AF+DQSQSLN
Sbjct: 654 VWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERTAFLDQSQSLN 713

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543
           ++M      K+SSM+ H W  GLKT  YYLR++PA
Sbjct: 714 LFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPA 747



 Score =  176 bits (447), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 114/164 (69%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IAK G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 585 WEALRARIAKTGMRNSLLLAIAPTATIASIAGVYECVEPQVSNLFKRETLSGEFLQVNGY 644

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL +LG+WD   ++ L   NGS+Q    IP+ ++ LY+T WE+PQ+ ++DMAA+R A
Sbjct: 645 LVEDLKKLGVWDARTREALREANGSVQGFNWIPEDVRALYRTAWELPQRGLIDMAAERTA 704

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQSQSLN++M      K+SSM+ H W  GLKT  YYLR++PA
Sbjct: 705 FLDQSQSLNLFMETPTIGKLSSMYAHAWNKGLKT-TYYLRSRPA 747



 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG+++ R   L    WIPDEFMRRV +D +WSL  
Sbjct: 296 RKGAAAVYLETWHSDIEEFLELRDNTGEDQRRTHHLNLAHWIPDEFMRRVAADGEWSLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L+D WGE+F+  Y+  EA+GL 
Sbjct: 356 PADVPELTDLWGEEFEAAYRAAEAKGLA 383



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD   ++ ++ +I E I   A EAS ++A + GP   +E +  +
Sbjct: 507 LGAMGLQDVFFKLRLPFDSAAAKAVSTRIAERIMLAAYEASADLAEKHGPVPAWEKTRTA 566

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    W AL+      G++
Sbjct: 567 RGVLHPDHFDVERTWPERWEALRARIAKTGMR 598


>gi|345848583|ref|ZP_08801603.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           zinciresistens K42]
 gi|345639928|gb|EGX61415.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           zinciresistens K42]
          Length = 767

 Score =  411 bits (1056), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/508 (42%), Positives = 309/508 (60%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 274 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADRPWSLFS 333

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D WGE+FD  Y K EA G   R +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 334 PSDVPELVDLWGEEFDAAYAKAEAAGLARRTLPARELYGRMMRTLAQTGNGWMTFKDAAN 393

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  L    +  SNLCTEI+E T   E AVCNL S+ L  ++   D   ++ +L + 
Sbjct: 394 RTANQTALPGNVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVRDGD--LDWERLDET 451

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN + RP+G+G  GL D+F Q+RLPFD  E+R L+ 
Sbjct: 452 VRTAVTFLDRVVDINFYPTEQAGRSNAKWRPVGLGAMGLQDVFFQLRLPFDSPEARALST 511

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E +   A EAS ++A R+GP   +E +  ++G+L  D +G  P     WAAL+E+IA
Sbjct: 512 RIAERVMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHYGTAPAWPERWAALRERIA 571

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 572 VTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKALG 631

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L   +GS+QD   IP  ++ LY+T WEIPQ+ ++DMAA R  ++DQSQSLN
Sbjct: 632 VWDARTREALRDASGSVQDFAWIPADVRALYRTAWEIPQRALIDMAAARTPYLDQSQSLN 691

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA    +    + +    +  + A   
Sbjct: 692 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIARAARAQARPEATVPVRQA--- 747

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
               AD E    A+ C  +N E C   Q
Sbjct: 748 ----ADPE----AVACSLENPESCEACQ 767



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 114/173 (65%), Gaps = 1/173 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D +G  P     WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 551 DHYGTAPAWPERWAALRERIAVTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRE 610

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF  VN +L+ +L  LG+WD   ++ L   +GS+QD   IP  ++ LY+T WEIPQ
Sbjct: 611 TLSGEFLQVNSYLVDELKALGVWDARTREALRDASGSVQDFAWIPADVRALYRTAWEIPQ 670

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
           + ++DMAA R  ++DQSQSLN+++      K+SSM+ + WK GLKT  YYLR+
Sbjct: 671 RALIDMAAARTPYLDQSQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRS 722



 Score = 94.0 bits (232), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV++D  WSL  
Sbjct: 274 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVDADRPWSLFS 333

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P+    L D WGE+FD  Y K EA GL 
Sbjct: 334 PSDVPELVDLWGEEFDAAYAKAEAAGLA 361



 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q+RLPFD  E+R L+ +I E +   A EAS ++A R+GP   +E +  +
Sbjct: 485 LGAMGLQDVFFQLRLPFDSPEARALSTRIAERVMLAAYEASADLAERNGPLPAWEKTRTA 544

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +G  P     WAAL+    V GL+
Sbjct: 545 RGVLHPDHYGTAPAWPERWAALRERIAVTGLR 576


>gi|291437352|ref|ZP_06576742.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
 gi|291340247|gb|EFE67203.1| class Ia ribonucleotide-diphosphate reductase large subunit chain
           [Streptomyces ghanaensis ATCC 14672]
          Length = 793

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/508 (40%), Positives = 300/508 (59%), Gaps = 14/508 (2%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV++D  WSL  
Sbjct: 298 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFS 357

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD +Y+  E +G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 358 PADVPELVDLWGEEFDAVYRAAEEKGLARKTLPARELYGRMMRTLAQTGNGWMTFKDAAN 417

Query: 211 RKSNQQNLG--TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ       I  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L   
Sbjct: 418 RTANQTATPGHVIHSSNLCTEILEVTDDGETAVCNLGSVNLGAFVDTAAGDIDWERLDRT 477

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD  E+R L+ 
Sbjct: 478 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEARTLST 537

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A   GP   +E +  ++G+L  D + V  T    W AL+ +IA
Sbjct: 538 RIAERIMLAAYEASADLAEDKGPLPAWEKTRTARGVLHPDHYDVDLTWPERWVALRGRIA 597

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 598 STGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVSDLKRLG 657

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD+  ++ L    GS+Q    IP  ++ LY+T WEIPQ++++D AA R  F+DQ+QSLN
Sbjct: 658 VWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTPFLDQAQSLN 717

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           ++M      K+SSM+ + WK GLKT  YYLR++PA    +    + +    +  +     
Sbjct: 718 LFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPATRIARAAQAQPQAQTTVPVQQPTPD 776

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           E           A+ C  +N E C   Q
Sbjct: 777 E-----------AVACSLENPESCEACQ 793



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 110/164 (67%), Gaps = 1/164 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           W AL+ +IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 589 WVALRGRIASTGLRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 648

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD+  ++ L    GS+Q    IP  ++ LY+T WEIPQ++++D AA R  
Sbjct: 649 LVSDLKRLGVWDERTREALREAGGSVQGFAWIPDDVRRLYRTAWEIPQRSLIDTAAARTP 708

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
           F+DQ+QSLN++M      K+SSM+ + WK GLKT  YYLR++PA
Sbjct: 709 FLDQAQSLNLFMETPTIGKLSSMYAYAWKQGLKT-TYYLRSRPA 751



 Score =  100 bits (250), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 58/88 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV++D  WSL  
Sbjct: 298 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVDADGPWSLFS 357

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD +Y+  E +GL 
Sbjct: 358 PADVPELVDLWGEEFDAVYRAAEEKGLA 385



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E+R L+ +I E I   A EAS ++A   GP   +E +  +
Sbjct: 511 LGAMGLQDVFFKLRLPFDSPEARTLSTRIAERIMLAAYEASADLAEDKGPLPAWEKTRTA 570

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    W AL+      GL+
Sbjct: 571 RGVLHPDHYDVDLTWPERWVALRGRIASTGLR 602


>gi|38344004|emb|CAC17631.2| class I ribonucleotide-diphosphate reductase large chain
           [Streptomyces microflavus]
          Length = 793

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 200/452 (44%), Positives = 289/452 (63%), Gaps = 3/452 (0%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 301 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFS 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D +G +FD  Y   EA+G   + +PAR+L+  ++ +  +TG  +M +KDA N
Sbjct: 361 PADVPELVDLYGAEFDAAYVAAEAKGLARKTMPARELYGRMMRTLAQTGNGWMTFKDASN 420

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  +++ A    ++ +L   
Sbjct: 421 RTANQTAEPGSVVHSSNLCTEIIEVTDDGETAVCNLGSVKLGAFVDTASGELDWERLDAT 480

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F Q++LPFD  E+R L+ 
Sbjct: 481 VRTAVTFLDRVVDINFYPTEQAGRSNSRWRPVGLGAMGLQDVFFQLKLPFDSAEARALST 540

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   ++ +  ++G+L +D + V  T    WAAL+ +IA
Sbjct: 541 RISERIMLAAYEASADLAERNGPLPAWDKTRTARGVLHHDHYDVELTWPERWAALRARIA 600

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L  LG
Sbjct: 601 EVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAYLVDELKRLG 660

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  ++GS+QD   +P + + LY+T WEIPQ+ ++DMAA R  F+DQ+QSLN
Sbjct: 661 VWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTPFLDQAQSLN 720

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
           ++M      K+SSM+ + WK GLKT  YYLR+
Sbjct: 721 LFMETPTIGKLSSMYAYAWKQGLKT-TYYLRS 751



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA+ G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 592 WAALRARIAEVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNAY 651

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L  LG+WD   ++ L  ++GS+QD   +P + + LY+T WEIPQ+ ++DMAA R  
Sbjct: 652 LVDELKRLGVWDAETREALRESSGSVQDFAWVPAETRALYRTAWEIPQRGLIDMAAARTP 711

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
           F+DQ+QSLN++M      K+SSM+ + WK GLKT  YYLR+
Sbjct: 712 FLDQAQSLNLFMETPTIGKLSSMYAYAWKQGLKT-TYYLRS 751



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 56/88 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV +DA WSL  
Sbjct: 301 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNADADWSLFS 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D +G +FD  Y   EA+GL 
Sbjct: 361 PADVPELVDLYGAEFDAAYVAAEAKGLA 388



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F Q++LPFD  E+R L+ +I E I   A EAS ++A R+GP   ++ +  +
Sbjct: 514 LGAMGLQDVFFQLKLPFDSAEARALSTRISERIMLAAYEASADLAERNGPLPAWDKTRTA 573

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L +D + V  T    WAAL+      G++
Sbjct: 574 RGVLHHDHYDVELTWPERWAALRARIAEVGMR 605


>gi|29829568|ref|NP_824202.1| ribonucleoside-diphosphate reductase alpha chain [Streptomyces
           avermitilis MA-4680]
 gi|29606676|dbj|BAC70737.1| putative ribonucleoside-diphosphate reductase alpha chain
           [Streptomyces avermitilis MA-4680]
          Length = 793

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/508 (41%), Positives = 306/508 (60%), Gaps = 16/508 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV  +  WSL  
Sbjct: 300 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFS 359

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WG++FD  Y+K E  G   + +PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 360 PADVPELVDLWGDEFDAAYRKAEEAGLAKKTIPARDLYGRMMRTLAQTGNGWMTFKDAAN 419

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  ++    +  ++ +L   
Sbjct: 420 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLGAFV--VGRDIDWERLDAT 477

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP E+A  SN R RP+G+G  GL D+F ++RLPFD  E++ L+ 
Sbjct: 478 VRTAVTFLDRVVDINFYPTEQAGRSNARWRPVGLGAMGLQDVFFKLRLPFDSPEAQALST 537

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A EAS ++A R+GP   +E +  ++G+L  D + V  T    WAAL+E+IA
Sbjct: 538 RIAERIMLAAYEASADLAERNGPLPAWEKTRTARGVLHPDHFDVELTWPERWAALRERIA 597

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ +L +LG
Sbjct: 598 AVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVDELKQLG 657

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L  + GS+Q    +PQ ++DLY+T WEIPQ+ ++DMAA R  F+DQ+QSLN
Sbjct: 658 VWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAARTPFLDQAQSLN 717

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568
           +++      K+SSM+ + WK GLKT  YYLR++PA       I +   A A   K    Q
Sbjct: 718 LFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATR-----IARAAQAQAQPEKTIPVQ 771

Query: 569 EEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           +  + D      A+ C  +N E C   Q
Sbjct: 772 QVSEPD------AVACSLENPESCEACQ 793



 Score =  174 bits (442), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 131/213 (61%), Gaps = 12/213 (5%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+E+IA  G+RNSLL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 589 WAALRERIAAVGMRNSLLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 648

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ +L +LG+WD   ++ L  + GS+Q    +PQ ++DLY+T WEIPQ+ ++DMAA R  
Sbjct: 649 LVDELKQLGVWDAQTREALRESGGSVQGFTWVPQDVRDLYRTAWEIPQRGLIDMAAARTP 708

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANA 963
           F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR++PA       I +   A A
Sbjct: 709 FLDQAQSLNLFLETPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATR-----IARAAQAQA 762

Query: 964 MASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              K    Q+  + D      A+ C  +N E C
Sbjct: 763 QPEKTIPVQQVSEPD------AVACSLENPESC 789



 Score = 97.1 bits (240), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 55/88 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    WIPDEFMRRV  +  WSL  
Sbjct: 300 RKGAAAVYLETWHSDIEEFLELRDNTGEDARRTHNLNLAHWIPDEFMRRVNENGVWSLFS 359

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WG++FD  Y+K E  GL 
Sbjct: 360 PADVPELVDLWGDEFDAAYRKAEEAGLA 387



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  GL D+F ++RLPFD  E++ L+ +I E I   A EAS ++A R+GP   +E +  +
Sbjct: 511 LGAMGLQDVFFKLRLPFDSPEAQALSTRIAERIMLAAYEASADLAERNGPLPAWEKTRTA 570

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D + V  T    WAAL+      G++
Sbjct: 571 RGVLHPDHFDVELTWPERWAALRERIAAVGMR 602


>gi|271967541|ref|YP_003341737.1| ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
 gi|270510716|gb|ACZ88994.1| Ribonucleoside-diphosphate reductase [Streptosporangium roseum DSM
           43021]
          Length = 731

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/463 (44%), Positives = 299/463 (64%), Gaps = 7/463 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 250 RKGAACVYLESWHADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADGVWSLFD 309

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L+D +G  F++ Y+  EAEG++++Q+PAR L+  ++ +  +TG  +M +KDA N
Sbjct: 310 PKEVPHLTDLYGAAFEEAYRAAEAEGRYVKQIPARSLYGRMMRTLAQTGNGWMTFKDAAN 369

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ  +    I  SNLCTEI+E T+  E AVCNL SI L  +++  D   ++T+L+  
Sbjct: 370 RTSNQTARPENVIHLSNLCTEILEVTNDAETAVCNLGSINLAAHLDGRD--VDWTRLRRT 427

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +   + L++ ID+ FYP  EA  +N + RPIG+GV GLAD+   +RLPFD  ++  L+ 
Sbjct: 428 VRTAVRFLDRTIDLGFYPTPEAGTANRKWRPIGLGVMGLADVLFALRLPFDSPQALELST 487

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A   S ++A   G + +Y+ +  + G+L  D +G   +   +WAAL+++IA
Sbjct: 488 RISEEIALAAYATSSDLAVERGRHPSYDDTRAAAGVLHPDHYGAARSP--EWAALRDRIA 545

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
           + G+RNSL+IA  PTA+ A I G  E  EP  SNI+ R  LSGEF  VN +L+RDL   G
Sbjct: 546 ETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETLSGEFLQVNRYLVRDLQARG 605

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   ++D +   +GS+QD+ G+P+ LK LY+T WE+PQK ++D+AA R  +IDQSQSLN
Sbjct: 606 LWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKALIDLAAARTPYIDQSQSLN 665

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           ++MA     K+SSM+ + WK GLKT  YYLR++PA    Q T+
Sbjct: 666 LFMATPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIAQTTV 707



 Score =  189 bits (480), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/173 (51%), Positives = 122/173 (70%), Gaps = 1/173 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           +WAAL+++IA+ G+RNSL+IA  PTA+ A I G  E  EP  SNI+ R  LSGEF  VN 
Sbjct: 536 EWAALRDRIAETGLRNSLMIAIAPTATIASIAGCYECIEPQVSNIFKRETLSGEFLQVNR 595

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLW   ++D +   +GS+QD+ G+P+ LK LY+T WE+PQK ++D+AA R 
Sbjct: 596 YLVRDLQARGLWTPQIRDAIKRADGSVQDVPGMPEDLKSLYRTAWELPQKALIDLAAART 655

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
            +IDQSQSLN++MA     K+SSM+ + WK GLKT  YYLR++PA    Q T+
Sbjct: 656 PYIDQSQSLNLFMATPTIGKLSSMYAYAWKSGLKT-TYYLRSRPATRIAQTTV 707



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 47/72 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLE WH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL  
Sbjct: 250 RKGAACVYLESWHADVEEFLELRDNTGEEARRTHNLNLANWIPDEFMRRVEADGVWSLFD 309

Query: 61  PNACRGLSDSWG 72
           P     L+D +G
Sbjct: 310 PKEVPHLTDLYG 321



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GLAD+   +RLPFD  ++  L+ +I E I   A   S ++A   G + +Y+ +  +
Sbjct: 461 LGVMGLADVLFALRLPFDSPQALELSTRISEEIALAAYATSSDLAVERGRHPSYDDTRAA 520

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
            G+L  D +G   +   +WAAL+      GL+
Sbjct: 521 AGVLHPDHYGAARSP--EWAALRDRIAETGLR 550


>gi|291240499|ref|XP_002740156.1| PREDICTED: ribonucleoside-diphosphate reductase large subunit-like
           [Saccoglossus kowalevskii]
          Length = 316

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/253 (76%), Positives = 219/253 (86%), Gaps = 3/253 (1%)

Query: 289 EARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 348
           +ARNSNMRHRPIGIGVQGLAD FI MR PFD +E+ LLNKQIFETIYYGAL+ASCE+A R
Sbjct: 61  KARNSNMRHRPIGIGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAER 120

Query: 349 DGPYQTY---EGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAS 405
           DG Y++Y   +G PVS+GILQYDMW VTPTDL DW ALK+ IA HG+RNSLL+APMPTAS
Sbjct: 121 DGVYESYKFGDGCPVSKGILQYDMWDVTPTDLHDWDALKKDIATHGLRNSLLLAPMPTAS 180

Query: 406 TAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 465
           TAQILGNNES EPYT+NIYSRRVLS EFQVVNHHLL+DL E+GLW+D+MK+ LI NNGSI
Sbjct: 181 TAQILGNNESVEPYTTNIYSRRVLSKEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSI 240

Query: 466 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFH 525
           Q I+GIP  +K LY+TVWEI QK +L MAADRGAFIDQSQSLNI++AE NY K++SMHF 
Sbjct: 241 QSIDGIPDHIKKLYRTVWEISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFF 300

Query: 526 GWKLGLKTGMYYL 538
            WK GLKTGMY L
Sbjct: 301 AWKQGLKTGMYNL 313



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/174 (75%), Positives = 150/174 (86%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW VTPTDL DW ALK+ IA HG+RNSLL+APMPTASTAQILGNNES EPYT+NIY
Sbjct: 140 LQYDMWDVTPTDLHDWDALKKDIATHGLRNSLLLAPMPTASTAQILGNNESVEPYTTNIY 199

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLS EFQVVNHHLL+DL E+GLW+D+MK+ LI NNGSIQ I+GIP  +K LY+TVWE
Sbjct: 200 SRRVLSKEFQVVNHHLLKDLTEMGLWNDDMKNLLIANNGSIQSIDGIPDHIKKLYRTVWE 259

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYL 942
           I QK +L MAADRGAFIDQSQSLNI++AE NY K++SMHF  WK GLKTGMY L
Sbjct: 260 ISQKNILIMAADRGAFIDQSQSLNIHIAEPNYGKLTSMHFFAWKQGLKTGMYNL 313



 Score =  136 bits (343), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 76/95 (80%), Gaps = 3/95 (3%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTY---EGS 649
           IGVQGLAD FI MR PFD +E+ LLNKQIFETIYYGAL+ASCE+A RDG Y++Y   +G 
Sbjct: 74  IGVQGLADAFILMRFPFDSDEAMLLNKQIFETIYYGALKASCELAERDGVYESYKFGDGC 133

Query: 650 PVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           PVS+GILQYDMW VTPTDL DW ALK     +GL+
Sbjct: 134 PVSKGILQYDMWDVTPTDLHDWDALKKDIATHGLR 168


>gi|455647608|gb|EMF26550.1| ribonucleoside-diphosphate reductase subunit alpha [Streptomyces
           gancidicus BKS 13-15]
          Length = 772

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/452 (44%), Positives = 281/452 (62%), Gaps = 5/452 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA WSL  
Sbjct: 285 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAPWSLFS 344

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+FD  Y+  EA+G   R +PAR+L+  ++ +  +TG  +M +KD  N
Sbjct: 345 PVDVPELVDLWGEEFDAAYRAAEAKGLARRTLPARELYGRMMRTLAQTGNGWMTFKDTAN 404

Query: 211 RKSNQ--QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R +NQ  +    +  SNLCTEI+E T   E AVCNL S+ L  + +      ++ +L   
Sbjct: 405 RTANQTAEPGHVVHSSNLCTEILEVTDDGETAVCNLGSVNLAAFAD--GDGMDWERLDAA 462

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++++D+NFYP EEA  SN R RP+G+GV GL D+  +MRLPFD  E+R L+ 
Sbjct: 463 VRTAVTFLDRVVDINFYPTEEASRSNSRWRPVGLGVMGLQDVLFRMRLPFDSPEARELST 522

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           +I E I   A E S  +A R GP   +E +  ++G+L  D +GV       WAAL+ +IA
Sbjct: 523 RIAERIMLAAYETSAALAERHGPLPAWEKTRTARGVLHPDHYGVELAWPERWAALRTRIA 582

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
             G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +L+ DL  LG
Sbjct: 583 ATGLRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSYLVEDLKRLG 642

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           +WD   ++ L    GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  F+DQ+QSLN
Sbjct: 643 VWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTPFLDQAQSLN 702

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
           +++      K+SSM+ + WK GLKT  YYLR+
Sbjct: 703 LFLETPTIGKLSSMYAYAWKQGLKT-TYYLRS 733



 Score =  166 bits (420), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/161 (49%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
           WAAL+ +IA  G+RN+LL+A  PTA+ A I G  E  EP  SN++ R  LSGEF  VN +
Sbjct: 574 WAALRTRIAATGLRNALLLAIAPTATIASIAGVYECIEPQVSNLFKRETLSGEFLQVNSY 633

Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
           L+ DL  LG+WD   ++ L    GS+QD   IP+ ++ LY+T WEIPQ+ ++DMAA R  
Sbjct: 634 LVEDLKRLGVWDARTREALREAGGSVQDFAWIPEDVRRLYRTAWEIPQRGLIDMAAARTP 693

Query: 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
           F+DQ+QSLN+++      K+SSM+ + WK GLKT  YYLR+
Sbjct: 694 FLDQAQSLNLFLETPTIGKLSSMYAYAWKQGLKT-TYYLRS 733



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 57/88 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A+YLE WH DI +FLEL+ NTG++  R  +L    W+PDEFMRRV  DA WSL  
Sbjct: 285 RKGAAAVYLETWHADIEEFLELRDNTGEDARRTHNLNLAHWVPDEFMRRVADDAPWSLFS 344

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
           P     L D WGE+FD  Y+  EA+GL 
Sbjct: 345 PVDVPELVDLWGEEFDAAYRAAEAKGLA 372



 Score = 69.7 bits (169), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL D+  +MRLPFD  E+R L+ +I E I   A E S  +A R GP   +E +  +
Sbjct: 496 LGVMGLQDVLFRMRLPFDSPEARELSTRIAERIMLAAYETSAALAERHGPLPAWEKTRTA 555

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +GV       WAAL+      GL+
Sbjct: 556 RGVLHPDHYGVELAWPERWAALRTRIAATGLR 587


>gi|291303012|ref|YP_003514290.1| ribonucleoside-diphosphate reductase subunit alpha [Stackebrandtia
           nassauensis DSM 44728]
 gi|290572232|gb|ADD45197.1| ribonucleoside-diphosphate reductase, alpha subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 771

 Score =  404 bits (1039), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/509 (42%), Positives = 311/509 (61%), Gaps = 24/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YL  WH DI +FLEL+ NTG E+ R  +L    WIPDEFMRRVESD  WSL  
Sbjct: 284 RKGAACVYLATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFD 343

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P     L D WGE+F+  Y+  EA GK  R V AR L+  ++ +  +TG  +M + D  N
Sbjct: 344 PKDVPELVDLWGEEFEKAYRDAEAAGKAARVVSARDLYGRMMRTLAQTGNGWMTFADISN 403

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R  NQ  +    +  SNLCTEI+E TS  E AVCNL S+  N+  +  D  ++F +L   
Sbjct: 404 RTCNQTAVPGNVVHLSNLCTEILEVTSDAETAVCNLGSV--NLAAHCVDGGFDFERLARS 461

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L++ ID+ +YP  EA  +N R RPIG+G+ G+AD+F ++R+PFD  E+R L+ 
Sbjct: 462 VRTAVTFLDRSIDLTYYPTAEAEKANRRWRPIGLGLMGMADVFFKLRMPFDSAEARELSN 521

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-VTPTDLWDWAALKEKI 387
           +I ETI   A E S ++AAR G + +Y+ +  ++G+L  D +     TD   W  ++E +
Sbjct: 522 RISETIALAAYETSADLAARLGAHPSYDDTRAARGVLHVDHFADAAVTDPDAWQRVRELV 581

Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
           A +G+RNSL+IA  PTA+ A I G +E  EP  SN++ R  LSGEF  VN +L+ DL + 
Sbjct: 582 AANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFIQVNKYLIADLKQR 641

Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
           GLW++ +++ ++   GSI DI  IPQ+L+ LY+T WE+PQ+ ++D+AA R  FIDQSQSL
Sbjct: 642 GLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLAAGRTPFIDQSQSL 701

Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARS 567
           N++MA     K+SSM+ + W+ GLKT  YYLR++PA       I++T +A+A        
Sbjct: 702 NLFMAAPTIGKLSSMYAYAWRSGLKT-TYYLRSRPATR-----INQTTVASA-------- 747

Query: 568 QEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             E+ A+ E    A+ C  +N E C   Q
Sbjct: 748 -PEVDAEAE----AIACSLENPETCEACQ 771



 Score =  169 bits (429), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/218 (43%), Positives = 139/218 (63%), Gaps = 19/218 (8%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           TD   W  ++E +A +G+RNSL+IA  PTA+ A I G +E  EP  SN++ R  LSGEF 
Sbjct: 569 TDPDAWQRVRELVAANGLRNSLMIAIAPTATIAAIAGCSECTEPVVSNVFKRETLSGEFI 628

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
            VN +L+ DL + GLW++ +++ ++   GSI DI  IPQ+L+ LY+T WE+PQ+ ++D+A
Sbjct: 629 QVNKYLIADLKQRGLWNEKLREAVVRAEGSIADIAAIPQELRQLYRTAWELPQRALIDLA 688

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           A R  FIDQSQSLN++MA     K+SSM+ + W+ GLKT  YYLR++PA       I++T
Sbjct: 689 AGRTPFIDQSQSLNLFMAAPTIGKLSSMYAYAWRSGLKT-TYYLRSRPATR-----INQT 742

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            +A+A          E+ A+ E    A+ C  +N E C
Sbjct: 743 TVASA---------PEVDAEAE----AIACSLENPETC 767



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 54/86 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YL  WH DI +FLEL+ NTG E+ R  +L    WIPDEFMRRVESD  WSL  
Sbjct: 284 RKGAACVYLATWHADIEEFLELRDNTGSEDRRTHNLNLANWIPDEFMRRVESDGDWSLFD 343

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P     L D WGE+F+  Y+  EA G
Sbjct: 344 PKDVPELVDLWGEEFEKAYRDAEAAG 369



 Score = 67.0 bits (162), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G+AD+F ++R+PFD  E+R L+ +I ETI   A E S ++AAR G + +Y+ +  +
Sbjct: 495 LGLMGMADVFFKLRMPFDSAEARELSNRISETIALAAYETSADLAARLGAHPSYDDTRAA 554

Query: 653 QGILQYDMWG-VTPTDLWDWAALKVLALVYGLK 684
           +G+L  D +     TD   W  ++ L    GL+
Sbjct: 555 RGVLHVDHFADAAVTDPDAWQRVRELVAANGLR 587


>gi|383777026|ref|YP_005461592.1| putative ribonucleoside-diphosphate reductase large subunit
           [Actinoplanes missouriensis 431]
 gi|381370258|dbj|BAL87076.1| putative ribonucleoside-diphosphate reductase large subunit
           [Actinoplanes missouriensis 431]
          Length = 786

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/463 (43%), Positives = 294/463 (63%), Gaps = 7/463 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 301 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLID 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +G++F + Y+   AE   ++ + AR L+  ++ +  +TG  +M +KD  N
Sbjct: 361 PSDAPMLPDLFGDEFTEAYRA--AEKNAVKTIKARDLYGRMMRTLAQTGNGWMTFKDPSN 418

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
           R SNQ       I  SNLCTEI+E  +  E AVCNL S+ L  ++  AD   ++ KL++ 
Sbjct: 419 RLSNQTGAPGNVIHLSNLCTEILEVNNDAETAVCNLGSVNLGAHVT-ADGV-DWEKLRET 476

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP ++A  SN R RP+G+G+ GL D F  +RLPFD  E+R L+ 
Sbjct: 477 VRTAVVFLDRVIDINYYPAQQAAASNPRWRPVGLGLMGLQDAFFTLRLPFDSAEARELST 536

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I+  ALE+S  +A R GP+  Y  +  ++G L   +WG  P+    WAA+KE+IA
Sbjct: 537 RVQEEIFLTALESSAALAERFGPHPAYPETRAAKGDLHPYLWGAEPSQNARWAAVKERIA 596

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  +N +L+R+L    
Sbjct: 597 AHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINTYLVRELKSRN 656

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++ +    GS+Q I  +P  +++L++T WE+PQ+ ++D+AA R  +IDQSQSLN
Sbjct: 657 LWTAGIREAIKRAEGSVQGIAELPADVRELFRTAWELPQRALIDLAAARAPYIDQSQSLN 716

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           ++MA     K+SSM+ + WK GLKT  YYLR++PA    Q T+
Sbjct: 717 LFMAAPTIGKVSSMYLYAWKAGLKTS-YYLRSRPATRIQQATV 758



 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 83/183 (45%), Positives = 122/183 (66%), Gaps = 1/183 (0%)

Query: 773 MWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 832
           +WG  P+    WAA+KE+IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  
Sbjct: 577 LWGAEPSQNARWAAVKERIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRET 636

Query: 833 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQK 892
           +SGEF  +N +L+R+L    LW   +++ +    GS+Q I  +P  +++L++T WE+PQ+
Sbjct: 637 MSGEFLQINTYLVRELKSRNLWTAGIREAIKRAEGSVQGIAELPADVRELFRTAWELPQR 696

Query: 893 TVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
            ++D+AA R  +IDQSQSLN++MA     K+SSM+ + WK GLKT  YYLR++PA    Q
Sbjct: 697 ALIDLAAARAPYIDQSQSLNLFMAAPTIGKVSSMYLYAWKAGLKTS-YYLRSRPATRIQQ 755

Query: 953 FTI 955
            T+
Sbjct: 756 ATV 758



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 56/83 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH DI +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 301 RKGAACVYLEPWHPDIEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLID 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G++F + Y+  E
Sbjct: 361 PSDAPMLPDLFGDEFTEAYRAAE 383



 Score = 73.6 bits (179), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 54/92 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD  E+R L+ ++ E I+  ALE+S  +A R GP+  Y  +  +
Sbjct: 510 LGLMGLQDAFFTLRLPFDSAEARELSTRVQEEIFLTALESSAALAERFGPHPAYPETRAA 569

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +G L   +WG  P+    WAA+K     +GL+
Sbjct: 570 KGDLHPYLWGAEPSQNARWAAVKERIAAHGLR 601


>gi|386845601|ref|YP_006263614.1| ribonucleoside-diphosphate reductase subunit alpha [Actinoplanes
           sp. SE50/110]
 gi|359833105|gb|AEV81546.1| ribonucleoside-diphosphate reductase alpha chain [Actinoplanes sp.
           SE50/110]
          Length = 822

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/460 (43%), Positives = 294/460 (63%), Gaps = 7/460 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 303 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLID 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+    L D +G+ F + Y+   AE K ++++ AR+L+  ++ +  +TG  +M +KD  N
Sbjct: 363 PSDAPELPDLFGDAFTEAYRI--AEKKAVKKIKARELYGRMMRTLAQTGNGWMTFKDRSN 420

Query: 211 RKSNQQNL--GTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
             SNQ      TI  SNLCTEI+E  S DE AVCNL SI L  +   AD   ++ +L+  
Sbjct: 421 ALSNQTGAPGNTIHLSNLCTEILEVNSDDETAVCNLGSINLGAHTT-ADGV-DWERLRAT 478

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            +     L+++ID+N+YP ++A  SN R RP+G+G+ GL D F  +RLPFD   ++ L+ 
Sbjct: 479 VRTAVVFLDRVIDINYYPSQQAAVSNPRWRPVGLGLMGLQDAFFTLRLPFDSPAAKELST 538

Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
           ++ E I+  +LEAS  +A + G +  Y  +  +QG L  ++WG   T    WAA+KE+IA
Sbjct: 539 RVQEEIFLTSLEASAGLAEQFGAHPAYAETRAAQGDLHPELWGAPMTQGARWAAVKERIA 598

Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
            HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R  +SGEF  +N++L+R+L   G
Sbjct: 599 AHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRETMSGEFLQINNYLVRELKSRG 658

Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
           LW   +++ +    GS+QDI  +P  +K++++T WE+PQ+ ++D+AA R  FIDQSQSLN
Sbjct: 659 LWTPEIREAIKRAEGSVQDIAALPADVKEIFRTAWELPQRALIDLAAARAPFIDQSQSLN 718

Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
           +++A     K+SSM+ + WK GLKT  YYLR++PA    Q
Sbjct: 719 LFLAAPTIGKLSSMYLYAWKSGLKTS-YYLRSRPATRIQQ 757



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 123/181 (67%), Gaps = 1/181 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           ++WG   T    WAA+KE+IA HG+RNSLL+A  PTA+ A I G  E  EP  SN++ R 
Sbjct: 578 ELWGAPMTQGARWAAVKERIAAHGLRNSLLVAIAPTATIASIAGCYECIEPQVSNLFKRE 637

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF  +N++L+R+L   GLW   +++ +    GS+QDI  +P  +K++++T WE+PQ
Sbjct: 638 TMSGEFLQINNYLVRELKSRGLWTPEIREAIKRAEGSVQDIAALPADVKEIFRTAWELPQ 697

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D+AA R  FIDQSQSLN+++A     K+SSM+ + WK GLKT  YYLR++PA    
Sbjct: 698 RALIDLAAARAPFIDQSQSLNLFLAAPTIGKLSSMYLYAWKSGLKTS-YYLRSRPATRIQ 756

Query: 952 Q 952
           Q
Sbjct: 757 Q 757



 Score = 93.2 bits (230), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 57/87 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA  +YLEPWH D+ +FLEL+ NTG+E  R  +L    WIPDEFMRRVE+D  WSL+ 
Sbjct: 303 RKGAACVYLEPWHPDVEEFLELRDNTGEESRRTHNLNLANWIPDEFMRRVEADEDWSLID 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D +G+ F + Y+  E + +
Sbjct: 363 PSDAPELPDLFGDAFTEAYRIAEKKAV 389



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ GL D F  +RLPFD   ++ L+ ++ E I+  +LEAS  +A + G +  Y  +  +
Sbjct: 512 LGLMGLQDAFFTLRLPFDSPAAKELSTRVQEEIFLTSLEASAGLAEQFGAHPAYAETRAA 571

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QG L  ++WG   T    WAA+K     +GL+
Sbjct: 572 QGDLHPELWGAPMTQGARWAAVKERIAAHGLR 603


>gi|408793257|ref|ZP_11204867.1| ribonucleotide reductase, barrel domain protein [Leptospira meyeri
           serovar Hardjo str. Went 5]
 gi|408464667|gb|EKJ88392.1| ribonucleotide reductase, barrel domain protein [Leptospira meyeri
           serovar Hardjo str. Went 5]
          Length = 323

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/285 (61%), Positives = 232/285 (81%)

Query: 272 VTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIF 331
           +T NLN+IID N+YPV EA+NSN++HRPIGIGVQGLAD+FI +R+ ++   ++ LN QIF
Sbjct: 1   MTVNLNRIIDENYYPVPEAKNSNLKHRPIGIGVQGLADVFILLRMAYESEAAKKLNIQIF 60

Query: 332 ETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHG 391
           ETIY+ A+ AS +IA  +G Y ++ GSP+SQGI Q+D+W V PT  WD+ +L++++ ++G
Sbjct: 61  ETIYFAAMTASKDIAKEEGAYPSFPGSPLSQGIFQFDLWNVKPTGRWDFESLRKEVVQYG 120

Query: 392 VRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWD 451
            RNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGEF +VN HLL DL+ELGLW+
Sbjct: 121 TRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFIIVNKHLLHDLIELGLWN 180

Query: 452 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM 511
             MK+Q+I   GSIQ I  IP  +K++YKTVWE+ Q++++DMA DRGAFI QSQSLN+++
Sbjct: 181 SEMKNQIIAAGGSIQSIPSIPDSIKEIYKTVWEMKQRSLIDMARDRGAFICQSQSLNLFV 240

Query: 512 AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
                +K++SMHF+ WK GLKTGMYYLRTK A+ AIQFTI+K ++
Sbjct: 241 ENPTISKLTSMHFYAWKQGLKTGMYYLRTKAASQAIQFTIEKEQI 285



 Score =  274 bits (700), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 121/192 (63%), Positives = 158/192 (82%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
           F++D+W V PT  WD+ +L++++ ++G RNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 94  FQFDLWNVKPTGRWDFESLRKEVVQYGTRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 153

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
           SRRVLSGEF +VN HLL DL+ELGLW+  MK+Q+I   GSIQ I  IP  +K++YKTVWE
Sbjct: 154 SRRVLSGEFIIVNKHLLHDLIELGLWNSEMKNQIIAAGGSIQSIPSIPDSIKEIYKTVWE 213

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + Q++++DMA DRGAFI QSQSLN+++     +K++SMHF+ WK GLKTGMYYLRTK A+
Sbjct: 214 MKQRSLIDMARDRGAFICQSQSLNLFVENPTISKLTSMHFYAWKQGLKTGMYYLRTKAAS 273

Query: 949 NAIQFTIDKTKM 960
            AIQFTI+K ++
Sbjct: 274 QAIQFTIEKEQI 285



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 66/92 (71%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           IGVQGLAD+FI +R+ ++   ++ LN QIFETIY+ A+ AS +IA  +G Y ++ GSP+S
Sbjct: 31  IGVQGLADVFILLRMAYESEAAKKLNIQIFETIYFAAMTASKDIAKEEGAYPSFPGSPLS 90

Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           QGI Q+D+W V PT  WD+ +L+   + YG +
Sbjct: 91  QGIFQFDLWNVKPTGRWDFESLRKEVVQYGTR 122


>gi|448929855|gb|AGE53421.1| ribonucleotide reductase large subunit [Acanthocystis turfacea
            Chlorella virus GM0701.1]
          Length = 1098

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/331 (54%), Positives = 242/331 (73%), Gaps = 3/331 (0%)

Query: 227  CTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYP 286
            C EIVEYT+ DE AVC + SI L  Y+   +  Y+F  L+   KI+ KNL+K IDV  Y 
Sbjct: 768  CAEIVEYTATDETAVCVIGSIVLQNYVK--NGAYDFEDLRKHVKILAKNLDKSIDVMSYA 825

Query: 287  VEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIA 346
            + EA+ SNMR RPIG+GVQGL D+F ++R+PFD + +R LN++IFE IY+ A+EASCE+A
Sbjct: 826  IPEAKTSNMRRRPIGVGVQGLQDVFFKLRMPFDSDAARNLNREIFEHIYFAAMEASCELA 885

Query: 347  ARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAST 406
               GP+ T+EGSP S+G++QY +WG  P    DW AL+E++ K GVRNSL  A MPTAST
Sbjct: 886  EEHGPHPTFEGSPASRGVMQYHLWGTEPVTRLDWKALEERVKK-GVRNSLTTALMPTAST 944

Query: 407  AQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ 466
            AQI G+ E+ EP TSN+YSRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ
Sbjct: 945  AQICGSVEAMEPITSNLYSRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQ 1004

Query: 467  DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHG 526
             + GI  +LK +YKT WE+  KTV+D+AADRG F+DQ+QS+N+++A      M+SM F+ 
Sbjct: 1005 RVIGIHPELKAIYKTAWELSMKTVIDLAADRGPFVDQTQSMNLFVAAPTMKSMTSMLFYA 1064

Query: 527  WKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
            WK GLKT MYY R+KPAANAI  T+ +  +A
Sbjct: 1065 WKKGLKTLMYYCRSKPAANAIAVTVGEECLA 1095



 Score =  226 bits (575), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 141/193 (73%), Gaps = 1/193 (0%)

Query: 769  FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
             +Y +WG  P    DW AL+E++ K GVRNSL  A MPTASTAQI G+ E+ EP TSN+Y
Sbjct: 904  MQYHLWGTEPVTRLDWKALEERVKK-GVRNSLTTALMPTASTAQICGSVEAMEPITSNLY 962

Query: 829  SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            SRR L+GEF VVN++L+RDL+  G W + MK+Q+I N GSIQ + GI  +LK +YKT WE
Sbjct: 963  SRRTLAGEFPVVNNYLVRDLIARGTWSEAMKNQIIANGGSIQRVIGIHPELKAIYKTAWE 1022

Query: 889  IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
            +  KTV+D+AADRG F+DQ+QS+N+++A      M+SM F+ WK GLKT MYY R+KPAA
Sbjct: 1023 LSMKTVIDLAADRGPFVDQTQSMNLFVAAPTMKSMTSMLFYAWKKGLKTLMYYCRSKPAA 1082

Query: 949  NAIQFTIDKTKMA 961
            NAI  T+ +  +A
Sbjct: 1083 NAIAVTVGEECLA 1095



 Score =  169 bits (427), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 103/138 (74%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P  C GL+D++G++++DLY +YE EG+  + V AR +W A++ +QIETG PY+L KD+ N
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEGRAKKVVKARDVWNAMIITQIETGMPYVLNKDSVN 416

Query: 211 RKSNQQNLGTIKCSNLCT 228
            K+ Q N GTIK SNLC 
Sbjct: 417 VKNMQSNAGTIKGSNLCV 434



 Score =  116 bits (291), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 67/86 (77%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FA+YLEP H DI DFL L++N G+E  RAR+LFY +W+ D FM+RVE+DA WSL  
Sbjct: 297 RKGSFAVYLEPHHPDIMDFLLLRRNQGEETQRARNLFYAMWLNDLFMKRVETDAAWSLFD 356

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C GL+D++G++++DLY +YE EG
Sbjct: 357 PKECPGLTDAFGKEYEDLYLRYETEG 382



 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 63/83 (75%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R+PFD + +R LN++IFE IY+ A+EASCE+A   GP+ T+EGSP S
Sbjct: 841 VGVQGLQDVFFKLRMPFDSDAARNLNREIFEHIYFAAMEASCELAEEHGPHPTFEGSPAS 900

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +G++QY +WG  P    DW AL+
Sbjct: 901 RGVMQYHLWGTEPVTRLDWKALE 923


>gi|224825452|ref|ZP_03698557.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudogulbenkiania ferrooxidans 2002]
 gi|224602373|gb|EEG08551.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudogulbenkiania ferrooxidans 2002]
          Length = 949

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/522 (40%), Positives = 305/522 (58%), Gaps = 20/522 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV   A+W+L+ 
Sbjct: 432 RKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLS 491

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D  G  F+  Y++YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 492 PSECPDLHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITF 551

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q ++G +  SNLCTEI   T+ DE+AVCNL S+ L  ++  AD T +  KL
Sbjct: 552 KDPCNIRSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQ-ADGTLDGAKL 610

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +I  + L+ +ID+NFYPV++ARNSN++HRP+G+G+ G  D     R+P+   E+  
Sbjct: 611 QRTIRIAMRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVE 670

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y+GS   +G+L +D              V  
Sbjct: 671 FADESMELVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGGYLDVDR 730

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSGEF 
Sbjct: 731 TERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFT 790

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V N HL+RDL +LGLWD+ M   L   +GS+  I+ IP +LK +Y T +E+  K ++D A
Sbjct: 791 VTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAA 850

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMA  +  K+  ++ + W  GLKT  YYLRT  A +A + T    
Sbjct: 851 SRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKT-TYYLRTLAATSAEKSTGRGG 909

Query: 555 KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           ++ NA+++         + D   A  A  C  DN  DC   Q
Sbjct: 910 EL-NAVSATTPAVSAAPEVDNTPATDAKFCSIDNP-DCEACQ 949



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 131/221 (59%), Gaps = 3/221 (1%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSG
Sbjct: 728 VDRTERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSG 787

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V N HL+RDL +LGLWD+ M   L   +GS+  I+ IP +LK +Y T +E+  K ++
Sbjct: 788 EFTVTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLV 847

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+YMA  +  K+  ++ + W  GLKT  YYLRT  A +A + T 
Sbjct: 848 DAASRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKT-TYYLRTLAATSAEKSTG 906

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              ++ NA+++         + D   A  A  C  DN  DC
Sbjct: 907 RGGEL-NAVSATTPAVSAAPEVDNTPATDAKFCSIDNP-DC 945



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 53/84 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV   A+W+L+ 
Sbjct: 432 RKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLS 491

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D  G  F+  Y++YEA
Sbjct: 492 PSECPDLHDLVGAAFEKRYQEYEA 515



 Score = 41.6 bits (96), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D     R+P+   E+     +  E + Y A  AS E+A   G Y +Y+GS   
Sbjct: 647 MGIMGFQDCLHMKRIPYASQEAVEFADESMELVAYHAYWASSELAQERGRYPSYKGSLWD 706

Query: 653 QGILQYD 659
           +G+L +D
Sbjct: 707 RGVLPHD 713


>gi|347539724|ref|YP_004847149.1| ribonucleoside-diphosphate reductase subunit alpha
           [Pseudogulbenkiania sp. NH8B]
 gi|345642902|dbj|BAK76735.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Pseudogulbenkiania sp. NH8B]
          Length = 949

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/522 (40%), Positives = 305/522 (58%), Gaps = 20/522 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV   A+W+L+ 
Sbjct: 432 RKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLS 491

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D  G  F+  Y++YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 492 PSECPDLHDLVGAAFEKRYQEYEAMAARGEIKVSKRIPALSLWRKMLTMLFETGHPWITF 551

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q ++G +  SNLCTEI   T+ DE+AVCNL S+ L  ++  AD T +  KL
Sbjct: 552 KDPCNIRSPQGHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLARHMQ-ADGTLDGAKL 610

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +I  + L+ +ID+NFYPV++ARNSN++HRP+G+G+ G  D     R+P+   E+  
Sbjct: 611 QRTIRIAMRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHMKRIPYASQEAVE 670

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y+GS   +G+L +D              V  
Sbjct: 671 FADESMELVAYHAYWASSELAQERGRYPSYKGSLWDRGVLPHDSINLLAAERGGYLDVDR 730

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSGEF 
Sbjct: 731 TERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFT 790

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V N HL+RDL +LGLWD+ M   L   +GS+  I+ IP +LK +Y T +E+  K ++D A
Sbjct: 791 VTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLVDAA 850

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMA  +  K+  ++ + W  GLKT  YYLRT  A +A + T    
Sbjct: 851 SRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKT-TYYLRTLAATSAEKSTGRGG 909

Query: 555 KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           ++ NA+++         + D   A  A  C  DN  DC   Q
Sbjct: 910 EL-NAVSATTPAVSAAPEVDNTPATDAKFCSIDNP-DCEACQ 949



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 131/221 (59%), Gaps = 3/221 (1%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSG
Sbjct: 728 VDRTERLDWNKLRERIKEHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSG 787

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V N HL+RDL +LGLWD+ M   L   +GS+  I+ IP +LK +Y T +E+  K ++
Sbjct: 788 EFTVTNEHLVRDLKKLGLWDEVMVSDLKYFDGSLGRIDRIPAELKAIYATAFEMDPKWLV 847

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+YMA  +  K+  ++ + W  GLKT  YYLRT  A +A + T 
Sbjct: 848 DAASRRQKWIDQAQSLNLYMAGASGKKLDELYKYAWVRGLKT-TYYLRTLAATSAEKSTG 906

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              ++ NA+++         + D   A  A  C  DN  DC
Sbjct: 907 RGGEL-NAVSATTPAVSAAPEVDNTPATDAKFCSIDNP-DC 945



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 53/84 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV   A+W+L+ 
Sbjct: 432 RKGAVCAYLETWHLDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDGAEWTLLS 491

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D  G  F+  Y++YEA
Sbjct: 492 PSECPDLHDLVGAAFEKRYQEYEA 515



 Score = 41.6 bits (96), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D     R+P+   E+     +  E + Y A  AS E+A   G Y +Y+GS   
Sbjct: 647 MGIMGFQDCLHMKRIPYASQEAVEFADESMELVAYHAYWASSELAQERGRYPSYKGSLWD 706

Query: 653 QGILQYD 659
           +G+L +D
Sbjct: 707 RGVLPHD 713


>gi|384082548|ref|ZP_09993723.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
           proteobacterium HIMB30]
          Length = 957

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/500 (41%), Positives = 297/500 (59%), Gaps = 21/500 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PD FM+RV  DA+W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFMKRVFEDAEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D +G  F++ YK+YEA     E K  ++V A+ LW  +L    ETG P++ +
Sbjct: 506 PSTCPDLHDLFGLAFENRYKEYEAMTQTGEIKHFKRVQAKDLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  ++   D   +  KL
Sbjct: 566 KDACNLRSPQQHAGVVHSSNLCTEITLNTSVDEIAVCNLGSVNLRQHVTK-DGGLDREKL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +A NSNM+HRP+G+G+ G  D   ++ +P+  +E+  
Sbjct: 625 AKTVKTAVRMLDNVIDINYYAVPQAENSNMKHRPVGLGIMGFQDALYELGIPYGSDEAVQ 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
              +  E I Y A++AS ++A   G Y +++GS  SQG+L  D               V 
Sbjct: 685 FADESMEVISYYAIDASADLARERGAYSSFDGSLWSQGVLPIDSIEKLREERGANYLNVD 744

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW  L+EK AK G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 745 TSAQLDWTELREK-AKDGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 803

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+RDL E GLWD+ M + L   +GS+Q +  IP  LK LY T +E+  + +++ 
Sbjct: 804 TVVNPYLVRDLKERGLWDNVMVNDLKYYDGSVQQVARIPDDLKALYATSFELETRWIVEA 863

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AA R  +IDQ+QSLNIY+A  N  K+   +   W  GLKT  YYLR   A  A + TI+K
Sbjct: 864 AARRQKWIDQAQSLNIYIANANGKKLDVTYRMAWFSGLKT-TYYLRALGATQAEKSTINK 922

Query: 554 TKMANAMASKDARSQEEIQA 573
           + + NA+++  A    E  A
Sbjct: 923 SNL-NAVSATQATQAAEPAA 941



 Score =  149 bits (377), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/191 (44%), Positives = 120/191 (62%), Gaps = 2/191 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+EK AK G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 750 DWTELREK-AKDGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M + L   +GS+Q +  IP  LK LY T +E+  + +++ AA R 
Sbjct: 809 YLVRDLKERGLWDNVMVNDLKYYDGSVQQVARIPDDLKALYATSFELETRWIVEAAARRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIY+A  N  K+   +   W  GLKT  YYLR   A  A + TI+K+ +  
Sbjct: 869 KWIDQAQSLNIYIANANGKKLDVTYRMAWFSGLKT-TYYLRALGATQAEKSTINKSNLNA 927

Query: 963 AMASKDTRSQE 973
             A++ T++ E
Sbjct: 928 VSATQATQAAE 938



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 55/84 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PD FM+RV  DA+W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNSANWVPDLFMKRVFEDAEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D +G  F++ YK+YEA
Sbjct: 506 PSTCPDLHDLFGLAFENRYKEYEA 529



 Score = 47.0 bits (110), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 38/67 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++ +P+  +E+     +  E I Y A++AS ++A   G Y +++GS  S
Sbjct: 661 LGIMGFQDALYELGIPYGSDEAVQFADESMEVISYYAIDASADLARERGAYSSFDGSLWS 720

Query: 653 QGILQYD 659
           QG+L  D
Sbjct: 721 QGVLPID 727


>gi|385303448|gb|EIF47521.1| ribonucleoside-diphosphate reductase large chain 1 [Dekkera
           bruxellensis AWRI1499]
          Length = 398

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 217/259 (83%)

Query: 295 MRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 354
           MR+RPI +GVQGLAD F  +RLPFDC E+R LN QIFET+Y+GALE S +++  +G Y+T
Sbjct: 1   MRNRPIALGVQGLADTFFMLRLPFDCPEARELNIQIFETLYHGALEESNQLSVEEGTYET 60

Query: 355 YEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNE 414
           YEGSP S+GILQYDMW   PTDLWDW ALK KIAK G+RNSLL+APMPTAST+QI+G NE
Sbjct: 61  YEGSPASKGILQYDMWNKKPTDLWDWEALKAKIAKDGLRNSLLVAPMPTASTSQIMGYNE 120

Query: 415 SFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQK 474
            FEP+TSNIY RRVL+GEFQ+VN ++LRDL+++G+W+D MK+ +I +NGSIQ++  IP  
Sbjct: 121 CFEPFTSNIYQRRVLAGEFQIVNPYMLRDLIDMGIWNDAMKNFIIHDNGSIQNLPNIPDN 180

Query: 475 LKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 534
           +K LY+TVWE+ QK+V+DMAADRGA+I QSQS+NI++      K++SMHF+GWK GLKTG
Sbjct: 181 IKKLYRTVWELSQKSVIDMAADRGAYICQSQSMNIHLQSPTMGKLTSMHFYGWKKGLKTG 240

Query: 535 MYYLRTKPAANAIQFTIDK 553
           MYYLRT+ AA AIQFT+D+
Sbjct: 241 MYYLRTQAAARAIQFTVDQ 259



 Score =  278 bits (712), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 159/189 (84%)

Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
            +YDMW   PTDLWDW ALK KIAK G+RNSLL+APMPTAST+QI+G NE FEP+TSNIY
Sbjct: 71  LQYDMWNKKPTDLWDWEALKAKIAKDGLRNSLLVAPMPTASTSQIMGYNECFEPFTSNIY 130

Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            RRVL+GEFQ+VN ++LRDL+++G+W+D MK+ +I +NGSIQ++  IP  +K LY+TVWE
Sbjct: 131 QRRVLAGEFQIVNPYMLRDLIDMGIWNDAMKNFIIHDNGSIQNLPNIPDNIKKLYRTVWE 190

Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
           + QK+V+DMAADRGA+I QSQS+NI++      K++SMHF+GWK GLKTGMYYLRT+ AA
Sbjct: 191 LSQKSVIDMAADRGAYICQSQSMNIHLQSPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAA 250

Query: 949 NAIQFTIDK 957
            AIQFT+D+
Sbjct: 251 RAIQFTVDQ 259



 Score =  130 bits (328), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 72/97 (74%)

Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
           N+   +GVQGLAD F  +RLPFDC E+R LN QIFET+Y+GALE S +++  +G Y+TYE
Sbjct: 3   NRPIALGVQGLADTFFMLRLPFDCPEARELNIQIFETLYHGALEESNQLSVEEGTYETYE 62

Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
           GSP S+GILQYDMW   PTDLWDW ALK      GL+
Sbjct: 63  GSPASKGILQYDMWNKKPTDLWDWEALKAKIAKDGLR 99


>gi|375095903|ref|ZP_09742168.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora marina XMU15]
 gi|374656636|gb|EHR51469.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora marina XMU15]
          Length = 817

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/524 (39%), Positives = 301/524 (57%), Gaps = 27/524 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D +W+L  
Sbjct: 303 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADGEWTLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+   GL D++G +F   Y+ YE      E +  R+V AR LW  +L    ETG P++ +
Sbjct: 363 PDEVAGLHDTYGAEFARRYRAYERAADAGEIRVFRRVRARSLWRRMLTMLFETGHPWITF 422

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T   E+AVCNL S+ L +++  A    +  KL
Sbjct: 423 KDPCNLRSPQQHVGVVHSSNLCTEITLNTGAGEIAVCNLGSVNLALHVTAAG--LDTEKL 480

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V +AR +N+RHRP+G+G+ G  D   ++ LP    E+  
Sbjct: 481 ERTVNTAVRMLDNVIDINFYTVPQARTANLRHRPVGLGLMGFTDALFELGLPPASREAVE 540

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A+ AS  +AA+ G Y+T+EGS  S+GIL  D               V 
Sbjct: 541 FADRSMEQLSYFAIAASVRLAAQRGRYETFEGSLWSRGILPIDSLRLLAAQREDGELDVD 600

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T   DW  L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF
Sbjct: 601 TTTTLDWDGLRERVRTTGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEF 660

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+RDL   GLWD+ M  +L  ++GS+ +I+ IP  LK LY T +E+  + ++D 
Sbjct: 661 TVVNPHLVRDLKRRGLWDEAMVTELKYHDGSVANIDRIPDDLKRLYATAFEVDPRWLIDA 720

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AA R  +IDQ+QSLN+Y+A  +  K+  ++ H W+ GLKT  YYLR   A    + T+  
Sbjct: 721 AARRQKWIDQAQSLNLYLAAPSGRKLDELYRHAWRSGLKT-TYYLRASAATQVEKSTLRG 779

Query: 554 TK-MANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           T    NA+A     +  EI   +  A     CR D + DC   Q
Sbjct: 780 TDGRLNAVAPAVPVASGEIGGPEPAA-----CRID-EPDCEACQ 817



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 8/222 (3%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T   DW  L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SG
Sbjct: 599 VDTTTTLDWDGLRERVRTTGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSG 658

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN HL+RDL   GLWD+ M  +L  ++GS+ +I+ IP  LK LY T +E+  + ++
Sbjct: 659 EFTVVNPHLVRDLKRRGLWDEAMVTELKYHDGSVANIDRIPDDLKRLYATAFEVDPRWLI 718

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D AA R  +IDQ+QSLN+Y+A  +  K+  ++ H W+ GLKT  YYLR   A    + T+
Sbjct: 719 DAAARRQKWIDQAQSLNLYLAAPSGRKLDELYRHAWRSGLKT-TYYLRASAATQVEKSTL 777

Query: 956 DKTK-MANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
             T    NA+A     +  EI   +  A     CR D + DC
Sbjct: 778 RGTDGRLNAVAPAVPVASGEIGGPEPAA-----CRID-EPDC 813



 Score = 92.8 bits (229), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 55/83 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D +W+L  
Sbjct: 303 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADGEWTLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL D++G +F   Y+ YE
Sbjct: 363 PDEVAGLHDTYGAEFARRYRAYE 385



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++ LP    E+     +  E + Y A+ AS  +AA+ G Y+T+EGS  S
Sbjct: 517 LGLMGFTDALFELGLPPASREAVEFADRSMEQLSYFAIAASVRLAAQRGRYETFEGSLWS 576

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 577 RGILPID 583


>gi|157953136|ref|YP_001498028.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123363|gb|ABT15231.1| hypothetical protein NY2A_B832R [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1103

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/326 (54%), Positives = 242/326 (74%), Gaps = 3/326 (0%)

Query: 227  CTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYP 286
            C EIVEYTSK+E AVC + S+ L  Y+   +  ++F  L+   KI+ KNL++ IDV  YP
Sbjct: 773  CNEIVEYTSKEETAVCVIGSVVLKNYVK--NDKFDFDDLRKNVKILAKNLDRSIDVMAYP 830

Query: 287  VEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIA 346
            ++EA  SN   RPIG+GVQGL D+F ++R  +D  E+R LN++IFE IYY A+EAS E+A
Sbjct: 831  IKEAETSNKLRRPIGVGVQGLQDVFFKLRFSYDSPEARDLNREIFEHIYYAAVEASVELA 890

Query: 347  ARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAST 406
               GPY T+EGSP S+GILQY +W VTP    DW  L+E++ K G+RNSL+ A MPTAST
Sbjct: 891  EIHGPYPTFEGSPASKGILQYHLWDVTPKSNLDWRGLEERV-KKGIRNSLVTALMPTAST 949

Query: 407  AQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ 466
            AQI G+ E+FEP TSN+YSRR L+GEF V+N +L+R+L+E G W++ MK+Q+I N GSIQ
Sbjct: 950  AQICGSVEAFEPITSNLYSRRTLAGEFPVINSYLVRELIERGTWNEQMKNQIIANGGSIQ 1009

Query: 467  DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHG 526
             + GI   +K +YKT W++  K+V+DMA+DRGAF+DQ+QS+N+++A+     ++SM F+G
Sbjct: 1010 KVIGIHPSVKAVYKTAWDLSMKSVIDMASDRGAFVDQTQSMNLFLAQPTLKNVTSMLFYG 1069

Query: 527  WKLGLKTGMYYLRTKPAANAIQFTID 552
            WK GLKT  YYLR+KPA++AI  TID
Sbjct: 1070 WKSGLKTLQYYLRSKPASSAIAVTID 1095



 Score =  227 bits (578), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 144/188 (76%), Gaps = 1/188 (0%)

Query: 769  FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
             +Y +W VTP    DW  L+E++ K G+RNSL+ A MPTASTAQI G+ E+FEP TSN+Y
Sbjct: 909  LQYHLWDVTPKSNLDWRGLEERV-KKGIRNSLVTALMPTASTAQICGSVEAFEPITSNLY 967

Query: 829  SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
            SRR L+GEF V+N +L+R+L+E G W++ MK+Q+I N GSIQ + GI   +K +YKT W+
Sbjct: 968  SRRTLAGEFPVINSYLVRELIERGTWNEQMKNQIIANGGSIQKVIGIHPSVKAVYKTAWD 1027

Query: 889  IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
            +  K+V+DMA+DRGAF+DQ+QS+N+++A+     ++SM F+GWK GLKT  YYLR+KPA+
Sbjct: 1028 LSMKSVIDMASDRGAFVDQTQSMNLFLAQPTLKNVTSMLFYGWKSGLKTLQYYLRSKPAS 1087

Query: 949  NAIQFTID 956
            +AI  TID
Sbjct: 1088 SAIAVTID 1095



 Score =  169 bits (428), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 103/138 (74%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHSDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           P+ C GL+D++G+++ +LY++YEAEGK    V AR +W  ++ + IETG PY+  KDA N
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEGKAKNVVKARDVWNTMVTTIIETGQPYVSNKDAVN 420

Query: 211 RKSNQQNLGTIKCSNLCT 228
           +K+ Q N GTI+ SNLC 
Sbjct: 421 KKNMQMNAGTIRGSNLCV 438



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 70/86 (81%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+FAIYLEP H D+ DFL +K+N G+E  RAR+LFY +W+ D FM+RVE+DAQWSL  
Sbjct: 301 RKGSFAIYLEPHHSDVMDFLLMKRNQGEESLRARNLFYAVWLNDLFMKRVETDAQWSLFD 360

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C GL+D++G+++ +LY++YEAEG
Sbjct: 361 PSECPGLTDAFGDEYAELYERYEAEG 386



 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GVQGL D+F ++R  +D  E+R LN++IFE IYY A+EAS E+A   GPY T+EGSP S
Sbjct: 846 VGVQGLQDVFFKLRFSYDSPEARDLNREIFEHIYYAAVEASVELAEIHGPYPTFEGSPAS 905

Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
           +GILQY +W VTP    DW  L+
Sbjct: 906 KGILQYHLWDVTPKSNLDWRGLE 928


>gi|254239526|ref|ZP_04932848.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
 gi|126192904|gb|EAZ56967.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa 2192]
          Length = 963

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 299/523 (57%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA       K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 EKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIA 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A++ASC++A   G YQT++GS  SQGIL  D               V 
Sbjct: 684 FADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+    A  +   Q    A+ + A     C  DN  DC   Q
Sbjct: 922 GKLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNP-DCEACQ 963



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 745 SETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 803

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ A
Sbjct: 804 VINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAA 863

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 864 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 922

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           K+    A  +   Q    A+ + A     C  DN  DC
Sbjct: 923 KLNAVSAGGNDGLQATPAAEPKPAPVPQACSIDNP-DC 959



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     Q  E I Y A++ASC++A   G YQT++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|452956701|gb|EME62087.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           decaplanina DSM 44594]
          Length = 990

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 285/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 429 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 488

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G  F + Y++YEA     E K  R+V A  LW  +L    ETG P++ +
Sbjct: 489 PNETPDLHDLYGNAFAERYREYEAAAERGELKVFRKVRAVDLWRRMLTMLFETGHPWITF 548

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+ DEVAVCNL S+ L  ++ P  +  +  +L
Sbjct: 549 KDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTP--EGLDTKRL 606

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRPIG+G+ G  D   ++ +P   +E+  
Sbjct: 607 EKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFQDALFEIGVPLSSDEAVQ 666

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL------------QYDMWGVT 373
                 E I Y A+ AS ++A   G YQT+EGS  S+GIL            Q D   V 
Sbjct: 667 FADTSMEHISYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDALDVD 726

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N++ +  +SG+F
Sbjct: 727 TSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNICGVGQSIEPLFQNLFVKSNMSGDF 786

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+R L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  K ++D 
Sbjct: 787 TVVNPHLVRSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWLVDA 846

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  + T+  
Sbjct: 847 GSRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRARSATHVEKSTLRG 905

Query: 554 T 554
           T
Sbjct: 906 T 906



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 1/187 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N++ + 
Sbjct: 721 DALDVDTSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNICGVGQSIEPLFQNLFVKS 780

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SG+F VVN HL+R L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  
Sbjct: 781 NMSGDFTVVNPHLVRSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 840

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++D  + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  
Sbjct: 841 KWLVDAGSRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRARSATHVE 899

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 900 KSTLRGT 906



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 429 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 488

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G  F + Y++YEA
Sbjct: 489 PNETPDLHDLYGNAFAERYREYEA 512



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++ +P   +E+        E I Y A+ AS ++A   G YQT+EGS  S
Sbjct: 643 LGLMGFQDALFEIGVPLSSDEAVQFADTSMEHISYYAISASTDLAEERGQYQTFEGSLWS 702

Query: 653 QGIL------------QYDMWGVTPTDLWDWAALKVLALVYGLK 684
           +GIL            Q D   V  +   DWA L+      G++
Sbjct: 703 KGILPIDSMQLLIDARQGDALDVDTSSTLDWAPLRERVKTVGMR 746



 Score = 42.0 bits (97), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LKV   V  + LW  +L    ETG P++ +KD CN +S QQ++ V+
Sbjct: 519 LKVFRKVRAVDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHVGVV 564


>gi|375107585|ref|ZP_09753846.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium JOSHI_001]
 gi|374668316|gb|EHR73101.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Burkholderiales bacterium JOSHI_001]
          Length = 972

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/484 (41%), Positives = 286/484 (59%), Gaps = 21/484 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D +G  F+  Y  YEA     E K  ++VPA+ LW  +L    ETG P++ +
Sbjct: 500 PSTCPDLHDKFGADFEAAYTAYEAKADRGELKLFKRVPAKDLWRKMLTMLFETGHPWVTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS  E+AVCNL S+ L  ++   D + +  KL
Sbjct: 560 KDACNVRSPQQHAGVVHSSNLCTEITLNTSDTEIAVCNLGSVNLAQHLK--DGSIDHDKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V++AR+SN+RHRP+G+G+ G  D   Q+RLP+   E+  
Sbjct: 618 KKTVATAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRLPYASAEAVE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-------------V 372
              +  E + Y A  AS ++AA  G Y +Y GS   +GIL +D                V
Sbjct: 678 FADRSMEAVCYHAYAASSDLAAERGRYSSYRGSLWDRGILPHDTLDLLAQARGGAEFVQV 737

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
             +   DW AL+ +IA+HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGE
Sbjct: 738 DRSATLDWDALRARIAQHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGE 797

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F +VN +L+RDL +LGLWDD M   L   +GS++ I+ +P ++K LY T +E+  + +++
Sbjct: 798 FTIVNEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPPEVKALYATAFEVDAQWLVE 857

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            AA R  +IDQ+QSLNIY+A  +  K+  ++   W  GLKT  YYLRT  A +A + T+ 
Sbjct: 858 AAARRQKWIDQAQSLNIYLAGASGKKLDEIYKLAWLRGLKT-TYYLRTMGATHAEKSTVS 916

Query: 553 KTKM 556
              M
Sbjct: 917 AGSM 920



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 115/178 (64%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +IA+HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGEF +VN 
Sbjct: 744 DWDALRARIAQHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTIVNE 803

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWDD M   L   +GS++ I+ +P ++K LY T +E+  + +++ AA R 
Sbjct: 804 YLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPPEVKALYATAFEVDAQWLVEAAARRQ 863

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLNIY+A  +  K+  ++   W  GLKT  YYLRT  A +A + T+    M
Sbjct: 864 KWIDQAQSLNIYLAGASGKKLDEIYKLAWLRGLKT-TYYLRTMGATHAEKSTVSAGSM 920



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 50/86 (58%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D +G  F+  Y  YEA+ 
Sbjct: 500 PSTCPDLHDKFGADFEAAYTAYEAKA 525



 Score = 49.3 bits (116), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 13/105 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+RLP+   E+     +  E + Y A  AS ++AA  G Y +Y GS   
Sbjct: 654 LGIMGFQDALYQLRLPYASAEAVEFADRSMEAVCYHAYAASSDLAAERGRYSSYRGSLWD 713

Query: 653 QGILQYDMWG-------------VTPTDLWDWAALKVLALVYGLK 684
           +GIL +D                V  +   DW AL+     +G++
Sbjct: 714 RGILPHDTLDLLAQARGGAEFVQVDRSATLDWDALRARIAQHGMR 758



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 670 DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           D   LK+   V    LW  +L    ETG P++ +KDACN +S QQ+  V+ 
Sbjct: 526 DRGELKLFKRVPAKDLWRKMLTMLFETGHPWVTFKDACNVRSPQQHAGVVH 576


>gi|451333815|ref|ZP_21904398.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Amycolatopsis azurea DSM 43854]
 gi|449423584|gb|EMD28906.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Amycolatopsis azurea DSM 43854]
          Length = 987

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/481 (41%), Positives = 285/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 431 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 490

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G  F + Y++YEA     E K  R+V A  LW  +L    ETG P++ +
Sbjct: 491 PNETPDLHDLYGTAFAERYREYEAAAERGELKVFRKVRAIDLWRRMLTMLFETGHPWITF 550

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+ DEVAVCNL S+ L  ++ P  +  +  +L
Sbjct: 551 KDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTP--EGIDAKRL 608

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRPIG+G+ G  D   ++ +P    E+  
Sbjct: 609 EKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFQDALFEIGVPLSSEEAVQ 668

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL------------QYDMWGVT 373
                 E I Y A+ AS ++A   G YQT+EGS  S+GIL            Q D   V 
Sbjct: 669 FADTSMEHISYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDALDVD 728

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DWA L+E++   G+RNS ++A  PTA+ + I+G  +S EP   N++ +  +SG+F
Sbjct: 729 TSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNIVGVGQSIEPLFQNLFVKSNMSGDF 788

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+R L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  K ++D 
Sbjct: 789 TVVNPHLVRSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWLVDA 848

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  + T+  
Sbjct: 849 GSRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRARSATHVEKSTLRG 907

Query: 554 T 554
           T
Sbjct: 908 T 908



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/187 (39%), Positives = 113/187 (60%), Gaps = 1/187 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DWA L+E++   G+RNS ++A  PTA+ + I+G  +S EP   N++ + 
Sbjct: 723 DALDVDTSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNIVGVGQSIEPLFQNLFVKS 782

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SG+F VVN HL+R L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  
Sbjct: 783 NMSGDFTVVNPHLVRSLKERGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 842

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++D  + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  
Sbjct: 843 KWLVDAGSRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRARSATHVE 901

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 902 KSTLRGT 908



 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 431 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 490

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G  F + Y++YEA
Sbjct: 491 PNETPDLHDLYGTAFAERYREYEA 514



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 15/116 (12%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +G+ G  D   ++ +P    E+        E I Y A+ AS ++A   
Sbjct: 633 ARRSNLRHRPIGLGLMGFQDALFEIGVPLSSEEAVQFADTSMEHISYYAISASTDLAEER 692

Query: 641 GPYQTYEGSPVSQGIL------------QYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G YQT+EGS  S+GIL            Q D   V  +   DWA L+      G++
Sbjct: 693 GQYQTFEGSLWSKGILPIDSMQLLIDARQGDALDVDTSSTLDWAPLRERVKTVGMR 748



 Score = 42.4 bits (98), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LKV   V  + LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 521 LKVFRKVRAIDLWRRMLTMLFETGHPWITFKDPCNLRSPQQHVGVVH 567


>gi|34497742|ref|NP_901957.1| ribonucleotide-diphosphate reductase subunit alpha [Chromobacterium
           violaceum ATCC 12472]
 gi|34103598|gb|AAQ59959.1| ribonucleoside-diphosphate reductase system [Chromobacterium
           violaceum ATCC 12472]
          Length = 972

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/522 (39%), Positives = 301/522 (57%), Gaps = 21/522 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     WSL  
Sbjct: 456 RKGAVCAYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWSLFS 515

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+  Y  YEA G     K  +++PA  LW  +L    ETG P++ +
Sbjct: 516 PSETPDLHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLWRKMLTMLFETGHPWVTF 575

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+ DE+AVCNL S+ L+ ++   D + +  KL
Sbjct: 576 KDPCNIRSPQQHMGVVHSSNLCTEITLNTNDDEIAVCNLGSVNLSAHLKE-DGSLDADKL 634

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFYPV++ARNSN++HRP+G+G+ G  D     R+P+  N +  
Sbjct: 635 QRTIRTALRMLDNVIDINFYPVKKARNSNLKHRPVGMGIMGFQDCLHIKRVPYGSNAAVE 694

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y GS   +G+L +D              V  
Sbjct: 695 FADESMEMVAYFAYLASTELAEERGRYPSYSGSLWDRGVLPHDSINLLAAERGGYLEVDR 754

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSGEF 
Sbjct: 755 TERMDWNKLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSGEFT 814

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V N +L+RDL   GLWD+ M   L   +GS+  I+ +P +LK +Y T +E+  K +++ A
Sbjct: 815 VTNEYLVRDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYATAFEVDPKWLVEAA 874

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMA  +  K+  ++ H W  GLKT  YYLRT  A +A + T    
Sbjct: 875 SRRQKWIDQAQSLNLYMAGASGKKLDELYKHAWLRGLKT-TYYLRTLAATSAEKSTGRGG 933

Query: 555 KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           ++ NA++S+ A++      D   A  A  C  DN  DC   Q
Sbjct: 934 EL-NAVSSQ-AQTAPAAAVDNTPATDAKFCSIDNP-DCESCQ 972



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 131/221 (59%), Gaps = 4/221 (1%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T+  DW  L+E+I +HG+RNS  +A  PTA+ A I+G + S EP   N++ +  LSG
Sbjct: 752 VDRTERMDWNKLRERIKQHGMRNSNCLAIAPTATIANIIGVSASIEPTYQNLFVKSNLSG 811

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V N +L+RDL   GLWD+ M   L   +GS+  I+ +P +LK +Y T +E+  K ++
Sbjct: 812 EFTVTNEYLVRDLKAAGLWDEVMVADLKYFDGSLGQIDRVPAELKAIYATAFEVDPKWLV 871

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + A+ R  +IDQ+QSLN+YMA  +  K+  ++ H W  GLKT  YYLRT  A +A + T 
Sbjct: 872 EAASRRQKWIDQAQSLNLYMAGASGKKLDELYKHAWLRGLKT-TYYLRTLAATSAEKSTG 930

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
              ++ NA++S+  ++      D   A  A  C  DN  DC
Sbjct: 931 RGGEL-NAVSSQ-AQTAPAAAVDNTPATDAKFCSIDNP-DC 968



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 57/103 (55%), Gaps = 5/103 (4%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     WSL  
Sbjct: 456 RKGAVCAYLETWHADIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWSLFS 515

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL-----VYFRPGAFAIY 98
           P+    L D +G+ F+  Y  YEA G      VY R  A +++
Sbjct: 516 PSETPDLHDLYGQAFEKAYTAYEARGARGELKVYKRIPALSLW 558



 Score = 42.0 bits (97), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LKV   +  L LW  +L    ETG P++ +KD CN +S QQ++ V+
Sbjct: 546 LKVYKRIPALSLWRKMLTMLFETGHPWVTFKDPCNIRSPQQHMGVV 591



 Score = 40.4 bits (93), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D     R+P+  N +     +  E + Y A  AS E+A   G Y +Y GS   
Sbjct: 671 MGIMGFQDCLHIKRVPYGSNAAVEFADESMEMVAYFAYLASTELAEERGRYPSYSGSLWD 730

Query: 653 QGILQYD 659
           +G+L +D
Sbjct: 731 RGVLPHD 737


>gi|270156778|ref|ZP_06185435.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|289164773|ref|YP_003454911.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           longbeachae NSW150]
 gi|269988803|gb|EEZ95057.1| ribonucleotide-diphosphate reductase alpha subunit [Legionella
           longbeachae D-4968]
 gi|288857946|emb|CBJ11806.1| putative ribonucleoside-diphosphate reductase, alpha subunit
           [Legionella longbeachae NSW150]
          Length = 941

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/482 (41%), Positives = 284/482 (58%), Gaps = 19/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LWIPD FM RV  DA W+L  
Sbjct: 439 RKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVREDADWTLFS 498

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY KYE +      K ++ V A KLW  +L    ETG P+M +
Sbjct: 499 PDEVPELHDQFGKAFEALYNKYEEKAHQGLMKNVKTVSAVKLWRKMLSMLFETGHPWMTF 558

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 559 KDPCNLRSPQQHCGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDIEKL 616

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K   K   + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D   ++++ +   E+  
Sbjct: 617 KQTIKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYELKIDYASEEAVE 676

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y +YEGS  S+GIL  D   +             
Sbjct: 677 FADSSMELISYYAIEASCDLAKERGSYSSYEGSLWSKGILPIDSINLLQQARNKYLEQDR 736

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW +L+ K+   G+RNS ++A  PTA+ + I G  +S EP   N+Y +  LSGEF 
Sbjct: 737 SQRLDWESLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFT 796

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V+N +L+ DL  L LWD+ M + L   NGS+Q I  IP  LK  Y T +EI    ++D A
Sbjct: 797 VINPYLVADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIWLVDAA 856

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLNIYMAE +  K+  ++ H W  GLKT  YYLR+  A+NA + T+  +
Sbjct: 857 SRRQKWIDQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKT-TYYLRSMGASNAEKSTVTDS 915

Query: 555 KM 556
            +
Sbjct: 916 AL 917



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/178 (43%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ K+   G+RNS ++A  PTA+ + I G  +S EP   N+Y +  LSGEF V+N 
Sbjct: 741 DWESLRIKVRTQGMRNSNVMAIAPTATISNICGVAQSIEPTYQNLYVKSNLSGEFTVINP 800

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP  LK  Y T +EI    ++D A+ R 
Sbjct: 801 YLVADLKALELWDEVMVNDLKYFNGSVQPISRIPADLKKRYATSFEIDPIWLVDAASRRQ 860

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLNIYMAE +  K+  ++ H W  GLKT  YYLR+  A+NA + T+  + +
Sbjct: 861 KWIDQAQSLNIYMAEPSGKKLDQLYMHAWIRGLKT-TYYLRSMGASNAEKSTVTDSAL 917



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LWIPD FM RV  DA W+L  
Sbjct: 439 RKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMMRVREDADWTLFS 498

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G+ F+ LY KYE
Sbjct: 499 PDEVPELHDQFGKAFEALYNKYE 521



 Score = 48.9 bits (115), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y +YEGS  S
Sbjct: 653 LGLMGFQDALYELKIDYASEEAVEFADSSMELISYYAIEASCDLAKERGSYSSYEGSLWS 712

Query: 653 QGILQYDMWGVTP-----------TDLWDWAALKVLALVYGLK 684
           +GIL  D   +             +   DW +L++     G++
Sbjct: 713 KGILPIDSINLLQQARNKYLEQDRSQRLDWESLRIKVRTQGMR 755



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 28/47 (59%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +K +  V  +KLW  +L    ETG P+M +KD CN +S QQ+  V+ 
Sbjct: 529 MKNVKTVSAVKLWRKMLSMLFETGHPWMTFKDPCNLRSPQQHCGVVH 575


>gi|403509721|ref|YP_006641359.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
           alba ATCC BAA-2165]
 gi|402803409|gb|AFR10819.1| ribonucleoside-diphosphate reductase, alpha subunit [Nocardiopsis
           alba ATCC BAA-2165]
          Length = 815

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/480 (40%), Positives = 287/480 (59%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD FM+RVE    W+L  
Sbjct: 280 RKGAVCAYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMKRVEEQGSWTLFS 339

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G +F + Y++YEAE      K  R +PA  LW  +L    ETG P++ +
Sbjct: 340 PDEVPDLHDKYGLEFVEAYERYEAEARAGRIKVHRTLPAVDLWRRMLTMLFETGHPWITF 399

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD  N +S QQ++G +  SNLCTEI   T KDEVAVCNL S+ L  +++   +  +  +L
Sbjct: 400 KDPSNLRSPQQHVGVVHSSNLCTEITLNTDKDEVAVCNLGSVNLARHVSA--EGIDIERL 457

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +IDVNFY + EAR +NMRHRP+G+G+ G  D   ++R P+    +  
Sbjct: 458 RRTVRTAVRMLDNVIDVNFYTIPEARRANMRHRPVGLGLMGFQDALFELRTPYGSEGAVS 517

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT---------- 375
              +  E I Y A+EAS E+AA  G Y+T+EGS  S+G+L  D   +             
Sbjct: 518 FADESMELIGYYAIEASMELAAERGSYETFEGSLWSRGVLPIDSLRLLAEARGGDLDMDR 577

Query: 376 -DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
            +  DW +L+E++   G+RNS ++A  PTA+ A I G N+S EP   N+Y +  +SG+F 
Sbjct: 578 GETLDWDSLRERVRTTGMRNSNVMAIAPTATIANITGVNQSIEPVYRNLYVKSNMSGDFT 637

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+RDL E GLWD+ M  +L  ++GS+ +I+ +P  LKDLY T +E+    +++  
Sbjct: 638 VVNDHLVRDLKERGLWDEEMVAELKRHDGSLGEIDRVPDDLKDLYATSFEVDPSWLVEAG 697

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMA  +  K+ +++   W+ GLKT  YYLR + A +  + T+  T
Sbjct: 698 SRRQKWIDQAQSLNLYMAAPSGRKLDALYRKAWRSGLKT-TYYLRAQSATHVEKSTLKGT 756



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E++   G+RNS ++A  PTA+ A I G N+S EP   N+Y +  +SG+F VVN 
Sbjct: 582 DWDSLRERVRTTGMRNSNVMAIAPTATIANITGVNQSIEPVYRNLYVKSNMSGDFTVVND 641

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+RDL E GLWD+ M  +L  ++GS+ +I+ +P  LKDLY T +E+    +++  + R 
Sbjct: 642 HLVRDLKERGLWDEEMVAELKRHDGSLGEIDRVPDDLKDLYATSFEVDPSWLVEAGSRRQ 701

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+YMA  +  K+ +++   W+ GLKT  YYLR + A +  + T+  T
Sbjct: 702 KWIDQAQSLNLYMAAPSGRKLDALYRKAWRSGLKT-TYYLRAQSATHVEKSTLKGT 756



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD FM+RVE    W+L  
Sbjct: 280 RKGAVCAYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFMKRVEEQGSWTLFS 339

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+    L D +G +F + Y++YEAE
Sbjct: 340 PDEVPDLHDKYGLEFVEAYERYEAE 364



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++R P+    +     +  E I Y A+EAS E+AA  G Y+T+EGS  S
Sbjct: 494 LGLMGFQDALFELRTPYGSEGAVSFADESMELIGYYAIEASMELAAERGSYETFEGSLWS 553

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 554 RGVLPID 560


>gi|149927166|ref|ZP_01915423.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
 gi|149824105|gb|EDM83326.1| ribonucleotide-diphosphate reductase alpha subunit [Limnobacter sp.
           MED105]
          Length = 969

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/480 (41%), Positives = 280/480 (58%), Gaps = 20/480 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 435 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGNWTLFS 494

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YE +      K  + V A KLW  IL    ETG P++ +
Sbjct: 495 PSDCPDLHDLYGKAFEKAYVGYEEKAARGDLKLFKTVEAAKLWRKILSMLFETGHPWITF 554

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T+++E+AVCNL S+ L  ++ PAD      + 
Sbjct: 555 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNENEIAVCNLGSVNLTRHLKPADNGELVLDH 614

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+    +  + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G  D    MR P+   +
Sbjct: 615 EKLQKTVGVAMRMLDNVIDINYYAVAKARNSNLRHRPVGMGMMGFQDALHMMRKPYASRD 674

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E I Y A EAS E+AA  G Y T++GS   +GI+  D              
Sbjct: 675 AVEFADESMEAICYYAYEASTELAAERGAYSTFKGSLWDKGIMPLDSLKLLEEERGGYVE 734

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW AL+ +I KHG+RNS  +A  PTA+ + I+G   S EP   N+Y +  LSG
Sbjct: 735 VDTSSRMDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPTFQNLYVKSNLSG 794

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF +VN HL+RDL  LG+WD+ M   L   +GS+  I+ IP+ LK LY T +E+  + ++
Sbjct: 795 EFTIVNEHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLYATAFEMDPRWLV 854

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + AA R  +IDQ QSLNIYMA ++  ++   +   W  GLKT  YYLRT  A +A + T+
Sbjct: 855 EAAARRQKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKT-TYYLRTIGATHAEKSTL 913



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 1/180 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW AL+ +I KHG+RNS  +A  PTA+ + I+G   S EP   N+Y +  LSG
Sbjct: 735 VDTSSRMDWDALRARIKKHGMRNSNCVAIAPTATISNIIGVAASIEPTFQNLYVKSNLSG 794

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF +VN HL+RDL  LG+WD+ M   L   +GS+  I+ IP+ LK LY T +E+  + ++
Sbjct: 795 EFTIVNEHLVRDLKRLGIWDEVMISDLKYFDGSVMKIDRIPEDLKRLYATAFEMDPRWLV 854

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQ QSLNIYMA ++  ++   +   W  GLKT  YYLRT  A +A + T+
Sbjct: 855 EAAARRQKWIDQGQSLNIYMAGVSGKRLDDTYKLAWIRGLKT-TYYLRTIGATHAEKSTL 913



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 49/83 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 435 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGNWTLFS 494

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L D +G+ F+  Y  YE
Sbjct: 495 PSDCPDLHDLYGKAFEKAYVGYE 517



 Score = 46.2 bits (108), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR P+   ++     +  E I Y A EAS E+AA  G Y T++GS   
Sbjct: 654 MGMMGFQDALHMMRKPYASRDAVEFADESMEAICYYAYEASTELAAERGAYSTFKGSLWD 713

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GI+  D              V  +   DW AL+     +G++
Sbjct: 714 KGIMPLDSLKLLEEERGGYVEVDTSSRMDWDALRARIKKHGMR 756



 Score = 43.5 bits (101), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
           LK+   V   KLW  IL    ETG P++ +KD CN +S QQ++ V+
Sbjct: 525 LKLFKTVEAAKLWRKILSMLFETGHPWITFKDPCNIRSPQQHVGVV 570


>gi|448407941|ref|ZP_21574136.1| ribonucleoside-diphosphate reductase subunit alpha [Halosimplex
           carlsbadense 2-9-1]
 gi|445675191|gb|ELZ27726.1| ribonucleoside-diphosphate reductase subunit alpha [Halosimplex
           carlsbadense 2-9-1]
          Length = 837

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/481 (39%), Positives = 292/481 (60%), Gaps = 19/481 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   Y+EPWH D  DFL+LK+NTG E  R  D+    W+PD FM+RV +D QW+L  
Sbjct: 312 RRGAACAYMEPWHLDYPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVRADEQWTLFS 371

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE--AEGKFIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L +++GE+F+ LY++YE  AE   +RQ   V A  LW   L    ETG P++ +
Sbjct: 372 PDEVPDLHEAYGEEFEQLYREYERKAEAGELRQYERVDAADLWRDTLTRLFETGHPWITF 431

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S Q + GTI+ SNLCTEI   TS DE AVCNL S+ L+ +++  +      KL
Sbjct: 432 KDACNVRSPQDHAGTIRSSNLCTEITLNTSTDETAVCNLGSVNLSEHVD--EDGIQREKL 489

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ ++D+NFYP + +  SNM HRPIG+G+ G  +  I  R+P +  E+  
Sbjct: 490 EATVETAMRMLDNVVDLNFYPTDRSEESNMTHRPIGLGMMGFHEALIDQRIPMNGEEAVD 549

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----------GVTP 374
              ++ E + Y A+  S ++AA  G Y +YEGS   +G+L  D             GVT 
Sbjct: 550 FADEVTEFVAYNAVLTSSKLAAERGTYDSYEGSKWDRGLLPQDTVDLLEDERGREVGVTA 609

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
            +  DW  ++E +A+HG+RNS  +A  PTA+ + I G + S EP  SN+Y +  +SG+F 
Sbjct: 610 EERLDWEHVREHVAEHGMRNSNTMAVAPTATISTIAGTSASIEPLYSNLYVKSNMSGDFT 669

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN  L+ DL    LW D ++D++  ++GS+Q+I  IP++L++LY+T +E+  +  L ++
Sbjct: 670 VVNDDLVADLEGRDLWTDEVRDRIKFHDGSVQEIGEIPEELRELYRTAFEVDPRHQLRLS 729

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A RG +IDQSQS N++  E + + ++ ++   W LGLKT  YYLRT  A+   + T+D +
Sbjct: 730 AARGVWIDQSQSHNVFFPETDGSLLADVYETAWDLGLKT-TYYLRTLGASQFEKSTLDMS 788

Query: 555 K 555
           +
Sbjct: 789 E 789



 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 121/185 (65%), Gaps = 1/185 (0%)

Query: 775 GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS 834
           GVT  +  DW  ++E +A+HG+RNS  +A  PTA+ + I G + S EP  SN+Y +  +S
Sbjct: 606 GVTAEERLDWEHVREHVAEHGMRNSNTMAVAPTATISTIAGTSASIEPLYSNLYVKSNMS 665

Query: 835 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTV 894
           G+F VVN  L+ DL    LW D ++D++  ++GS+Q+I  IP++L++LY+T +E+  +  
Sbjct: 666 GDFTVVNDDLVADLEGRDLWTDEVRDRIKFHDGSVQEIGEIPEELRELYRTAFEVDPRHQ 725

Query: 895 LDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           L ++A RG +IDQSQS N++  E + + ++ ++   W LGLKT  YYLRT  A+   + T
Sbjct: 726 LRLSAARGVWIDQSQSHNVFFPETDGSLLADVYETAWDLGLKT-TYYLRTLGASQFEKST 784

Query: 955 IDKTK 959
           +D ++
Sbjct: 785 LDMSE 789



 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   Y+EPWH D  DFL+LK+NTG E  R  D+    W+PD FM+RV +D QW+L  
Sbjct: 312 RRGAACAYMEPWHLDYPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVRADEQWTLFS 371

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L +++GE+F+ LY++YE
Sbjct: 372 PDEVPDLHEAYGEEFEQLYREYE 394



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  +  I  R+P +  E+     ++ E + Y A+  S ++AA  G Y +YEGS   
Sbjct: 526 LGMMGFHEALIDQRIPMNGEEAVDFADEVTEFVAYNAVLTSSKLAAERGTYDSYEGSKWD 585

Query: 653 QGILQYDM-----------WGVTPTDLWDWAALKVLALVYGLK 684
           +G+L  D             GVT  +  DW  ++     +G++
Sbjct: 586 RGLLPQDTVDLLEDERGREVGVTAEERLDWEHVREHVAEHGMR 628


>gi|152988045|ref|YP_001349578.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PA7]
 gi|150963203|gb|ABR85228.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Pseudomonas aeruginosa PA7]
          Length = 963

 Score =  374 bits (961), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 299/523 (57%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA       K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 EKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIA 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A++ASC++A   G YQT++GS  SQGIL  D               V 
Sbjct: 684 FADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+    A  +   Q    A+ + A     C  DN  DC   Q
Sbjct: 922 GKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DCEACQ 963



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 745 SETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 803

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ A
Sbjct: 804 VINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAA 863

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 864 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 922

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           K+    A  +   Q    A+ + A     C  DN  DC
Sbjct: 923 KLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DC 959



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     Q  E I Y A++ASC++A   G YQT++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|355647946|ref|ZP_09055339.1| hypothetical protein HMPREF1030_04425 [Pseudomonas sp. 2_1_26]
 gi|354827617|gb|EHF11762.1| hypothetical protein HMPREF1030_04425 [Pseudomonas sp. 2_1_26]
          Length = 963

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 299/523 (57%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA       K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 EKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIA 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A++ASC++A   G YQT++GS  SQGIL  D               V 
Sbjct: 684 FADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+    A  +   Q    A+ + A     C  DN  DC   Q
Sbjct: 922 GKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DCEACQ 963



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 745 SETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 803

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ A
Sbjct: 804 VINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAA 863

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 864 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 922

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           K+    A  +   Q    A+ + A     C  DN  DC
Sbjct: 923 KLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DC 959



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     Q  E I Y A++ASC++A   G YQT++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 41.6 bits (96), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|15596353|ref|NP_249847.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO1]
 gi|107100606|ref|ZP_01364524.1| hypothetical protein PaerPA_01001631 [Pseudomonas aeruginosa PACS2]
 gi|116049088|ref|YP_792110.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218892880|ref|YP_002441749.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa LESB58]
 gi|254234290|ref|ZP_04927613.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|296390474|ref|ZP_06879949.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAb1]
 gi|313106127|ref|ZP_07792382.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
 gi|386059938|ref|YP_005976460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa M18]
 gi|386064969|ref|YP_005980273.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa NCGM2.S1]
 gi|392985359|ref|YP_006483946.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa DK2]
 gi|416858081|ref|ZP_11913139.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa 138244]
 gi|416873134|ref|ZP_11917258.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa 152504]
 gi|418583375|ref|ZP_13147444.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa MPAO1/P1]
 gi|418594614|ref|ZP_13158397.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa MPAO1/P2]
 gi|419752309|ref|ZP_14278717.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PADK2_CF510]
 gi|420140843|ref|ZP_14648572.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa CIG1]
 gi|421155346|ref|ZP_15614824.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 14886]
 gi|421162135|ref|ZP_15621022.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 25324]
 gi|421169360|ref|ZP_15627380.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 700888]
 gi|421175790|ref|ZP_15633462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa CI27]
 gi|421181857|ref|ZP_15639344.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa E2]
 gi|421515784|ref|ZP_15962470.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO579]
 gi|451987190|ref|ZP_21935348.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Pseudomonas aeruginosa 18A]
 gi|9947078|gb|AAG04545.1|AE004545_8 NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa PAO1]
 gi|115584309|gb|ABJ10324.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166221|gb|EAZ51732.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           C3719]
 gi|218773108|emb|CAW28920.1| NrdA, catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa LESB58]
 gi|310878884|gb|EFQ37478.1| ribonucleoside reductase, large chain [Pseudomonas aeruginosa
           39016]
 gi|334839848|gb|EGM18519.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa 138244]
 gi|334845270|gb|EGM23834.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa 152504]
 gi|347306244|gb|AEO76358.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa M18]
 gi|348033528|dbj|BAK88888.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa NCGM2.S1]
 gi|375043007|gb|EHS35642.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa MPAO1/P2]
 gi|375046983|gb|EHS39532.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa MPAO1/P1]
 gi|384401319|gb|EIE47674.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PADK2_CF510]
 gi|392320864|gb|AFM66244.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa DK2]
 gi|403246408|gb|EJY60135.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa CIG1]
 gi|404349512|gb|EJZ75849.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PAO579]
 gi|404520730|gb|EKA31391.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 14886]
 gi|404526566|gb|EKA36772.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 700888]
 gi|404531568|gb|EKA41508.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa CI27]
 gi|404536973|gb|EKA46595.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa ATCC 25324]
 gi|404543121|gb|EKA52422.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa E2]
 gi|451754808|emb|CCQ87871.1| Ribonucleotide reductase of class Ia (aerobic),alpha subunit
           [Pseudomonas aeruginosa 18A]
 gi|453048305|gb|EME96018.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           aeruginosa PA21_ST175]
          Length = 963

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 299/523 (57%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA       K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 EKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIA 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A++ASC++A   G YQT++GS  SQGIL  D               V 
Sbjct: 684 FADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+    A  +   Q    A+ + A     C  DN  DC   Q
Sbjct: 922 GKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DCEACQ 963



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 745 SETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 803

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ A
Sbjct: 804 VINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAA 863

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 864 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 922

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           K+    A  +   Q    A+ + A     C  DN  DC
Sbjct: 923 KLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DC 959



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     Q  E I Y A++ASC++A   G YQT++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 41.6 bits (96), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|294055009|ref|YP_003548667.1| ribonucleoside-diphosphate reductase subunit alpha [Coraliomargarita
            akajimensis DSM 45221]
 gi|293614342|gb|ADE54497.1| ribonucleoside-diphosphate reductase, alpha subunit [Coraliomargarita
            akajimensis DSM 45221]
          Length = 1080

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 297/509 (58%), Gaps = 22/509 (4%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R G+   YLE WH DI DFLEL+KNTG +  R  D+    WIPD FM+R+E+   W+L  
Sbjct: 564  RRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDWTLFR 623

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEAEGK----FIRQVPARKLWFAILDSQIETGTPYMLYK 206
             N    L D +G+ F+D Y +YEA  +    F ++VPA +LW ++L    ETG P++ +K
Sbjct: 624  SNETPDLHDLYGKAFEDRYCEYEAMAERGELFGKKVPAIELWKSMLRMIFETGHPWITFK 683

Query: 207  DACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLK 266
            D CN +S Q + G I  SNLCTEI   TS +E AVCNL S+ L+ +++  D   +  KL+
Sbjct: 684  DPCNVRSPQDHAGVIHSSNLCTEITLNTSDEETAVCNLGSVVLDSHLDK-DGNLDHEKLR 742

Query: 267  DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +   I  + L+ +ID+NFYP E A+ +N RHRPIG+GV GL +      + F    +   
Sbjct: 743  ETVSIAVRALDNVIDINFYPTEAAKTANSRHRPIGLGVMGLQNALFVKDIAFASQAAVEF 802

Query: 327  NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL--------- 377
            N +  E I Y A EAS ++AA  G Y TY+GS   +G++  D   +  ++          
Sbjct: 803  NDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWDRGLMPQDTLDMLQSERGEEVVVPRA 862

Query: 378  --WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
               DW  L+ KIAK G+RNS ++A  PTA+ + I+G +   EP   N++ +  LSG+F V
Sbjct: 863  GKMDWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSGDFIV 922

Query: 436  VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
            +N HL+RDL   GLWD +M DQL   +G +  I+GIP  L++ YKT + I  +  +D AA
Sbjct: 923  LNGHLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFIDAAA 982

Query: 496  DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID--- 552
             R  +IDQSQS+N+++AE +   +S M+   W+ GLKT  YYLRT  A+N  + T+    
Sbjct: 983  RRQKWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKT-TYYLRTLGASNIEKATVSVKK 1041

Query: 553  --KTKMANAMASKDARSQEEIQADQEQAM 579
              + +  +A  +K   +  E++A   +AM
Sbjct: 1042 EVRGRAGDATPAKKEYTDAEVKACSLEAM 1070



 Score =  152 bits (384), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/192 (42%), Positives = 119/192 (61%), Gaps = 1/192 (0%)

Query: 783  DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            DW  L+ KIAK G+RNS ++A  PTA+ + I+G +   EP   N++ +  LSG+F V+N 
Sbjct: 866  DWNPLRAKIAKQGMRNSNVLAIAPTATISNIMGTSPCIEPTYKNLFVKSNLSGDFIVLNG 925

Query: 843  HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            HL+RDL   GLWD +M DQL   +G +  I+GIP  L++ YKT + I  +  +D AA R 
Sbjct: 926  HLVRDLKSRGLWDQDMLDQLKYFDGELNAIDGIPADLREKYKTAFTIEYQYFIDAAARRQ 985

Query: 903  AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
             +IDQSQS+N+++AE +   +S M+   W+ GLKT  YYLRT  A+N  + T+   K   
Sbjct: 986  KWIDQSQSVNLFLAEPDIKTLSHMYRDAWRKGLKT-TYYLRTLGASNIEKATVSVKKEVR 1044

Query: 963  AMASKDTRSQEE 974
              A   T +++E
Sbjct: 1045 GRAGDATPAKKE 1056



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+   YLE WH DI DFLEL+KNTG +  R  D+    WIPD FM+R+E+   W+L  
Sbjct: 564 RRGSGCAYLETWHNDIHDFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEARQDWTLFR 623

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
            N    L D +G+ F+D Y +YEA
Sbjct: 624 SNETPDLHDLYGKAFEDRYCEYEA 647



 Score = 44.3 bits (103), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV GL +      + F    +   N +  E I Y A EAS ++AA  G Y TY+GS   
Sbjct: 778 LGVMGLQNALFVKDIAFASQAAVEFNDEFMEAIAYYAYEASSDLAAEHGTYSTYKGSKWD 837

Query: 653 QGILQYD 659
           +G++  D
Sbjct: 838 RGLMPQD 844


>gi|257055669|ref|YP_003133501.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora viridis DSM 43017]
 gi|256585541|gb|ACU96674.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora viridis DSM 43017]
          Length = 815

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/481 (39%), Positives = 285/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 302 RKGAACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 361

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE        +  R+V A +LW  +L    ETG P++ +
Sbjct: 362 PDEVPDLHDLYGTAFAERYRAYEKAADAGQIRVFRRVSATQLWRRMLTMLFETGHPWITF 421

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  +I       +   L
Sbjct: 422 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSPDEIAVCNLGSVNLARHI--GKDGLDVEAL 479

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY V EAR SN+RHRP+G+G+ G  D   ++ +P   +E+  
Sbjct: 480 RKTVRTAVRMLDNVIDINFYTVPEARRSNLRHRPVGLGLMGFTDALFELGIPQASDEAVE 539

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A+ AS E+A   G Y +++GS  S+GIL  D               + 
Sbjct: 540 FADRSMEVLSYHAISASVELAGERGAYPSFDGSLWSRGILPLDSLRLLAEARGEDELDID 599

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW AL+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF
Sbjct: 600 TSSTLDWDALRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEF 659

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+RDL   GLWD+ M  +L +++G +  IE +P++LK LY T +E   + ++D 
Sbjct: 660 TVVNPYLVRDLKRRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDA 719

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AA R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  
Sbjct: 720 AARRQKWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRG 778

Query: 554 T 554
           T
Sbjct: 779 T 779



 Score =  149 bits (376), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 116/176 (65%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF VVN 
Sbjct: 605 DWDALRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNP 664

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD+ M  +L +++G +  IE +P++LK LY T +E   + ++D AA R 
Sbjct: 665 YLVRDLKRRGLWDERMVVELKLHDGVLGPIERVPEELKKLYATAFEFDSRWLVDAAARRQ 724

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  T
Sbjct: 725 KWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRGT 779



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 54/83 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 302 RKGAACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 361

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 362 PDEVPDLHDLYGTAFAERYRAYE 384



 Score = 43.9 bits (102), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++ +P   +E+     +  E + Y A+ AS E+A   G Y +++GS  S
Sbjct: 516 LGLMGFTDALFELGIPQASDEAVEFADRSMEVLSYHAISASVELAGERGAYPSFDGSLWS 575

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 576 RGILPLD 582


>gi|72163400|ref|YP_291057.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
 gi|71917132|gb|AAZ57034.1| ribonucleoside-diphosphate reductase [Thermobifida fusca YX]
          Length = 821

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 282/480 (58%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD F+ RVESDAQW+L  
Sbjct: 286 RKGAVCAYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFS 345

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +GE F   Y  YE      E +  R+V A  LW  +L    ETG P++ +
Sbjct: 346 PDEVPDLHDRYGEDFARAYVAYERAADRGEIRVFRRVRAVDLWRRMLTMLFETGHPWITF 405

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DEVAVCNL S+ L  ++ P     +  +L
Sbjct: 406 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSLDEVAVCNLGSVNLANHVGP--DGLDAERL 463

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +IDVN Y + EA  +NMRHRPIG+G+ G  D    +RLP    E+  
Sbjct: 464 RRTVRTAVRMLDNVIDVNLYTIPEAERANMRHRPIGLGLMGYQDALFTLRLPVASPEAVE 523

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----------GVTP 374
              +  E + Y A+EAS ++AA  G Y ++EGS  S+GIL  D              V  
Sbjct: 524 FADESMELLSYYAIEASADLAAERGSYSSFEGSLWSRGILPIDSLELLAEARRGDLDVDR 583

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T   DW  L+EK+   G+RNS ++A  PTA+ A I+G N S EP   N+Y +  +SG+F 
Sbjct: 584 TQRLDWDTLREKVRTTGMRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSGDFT 643

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN  L+RDL E GLWD+ M   L +++GS+  I+ +P+ LK+LY T +EI    ++D A
Sbjct: 644 VVNPSLVRDLKERGLWDEEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLVDAA 703

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLN+YMAE +  K+  ++   W+ GLKT  YYLR++ A +  + T+  T
Sbjct: 704 SRRQKWIDQAQSLNLYMAEPSGRKLDELYRRAWRKGLKT-TYYLRSQGATHVEKSTLRGT 762



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/183 (43%), Positives = 117/183 (63%), Gaps = 1/183 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T   DW  L+EK+   G+RNS ++A  PTA+ A I+G N S EP   N+Y +  +SG
Sbjct: 581 VDRTQRLDWDTLREKVRTTGMRNSNVMAIAPTATIANIVGVNPSIEPLYRNLYVKANMSG 640

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           +F VVN  L+RDL E GLWD+ M   L +++GS+  I+ +P+ LK+LY T +EI    ++
Sbjct: 641 DFTVVNPSLVRDLKERGLWDEEMVTALKLHDGSLGPIDRVPEDLKNLYATAFEIDPIWLV 700

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+YMAE +  K+  ++   W+ GLKT  YYLR++ A +  + T+
Sbjct: 701 DAASRRQKWIDQAQSLNLYMAEPSGRKLDELYRRAWRKGLKT-TYYLRSQGATHVEKSTL 759

Query: 956 DKT 958
             T
Sbjct: 760 RGT 762



 Score = 89.7 bits (221), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 51/83 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD F+ RVESDAQW+L  
Sbjct: 286 RKGAVCAYLETWHIDIEEFLDLRKNTGDERRRTHDMNTANWVPDLFLERVESDAQWTLFS 345

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +GE F   Y  YE
Sbjct: 346 PDEVPDLHDRYGEDFARAYVAYE 368



 Score = 48.5 bits (114), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +RLP    E+     +  E + Y A+EAS ++AA  G Y ++EGS  S
Sbjct: 500 LGLMGYQDALFTLRLPVASPEAVEFADESMELLSYYAIEASADLAAERGSYSSFEGSLWS 559

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 560 RGILPID 566


>gi|194290771|ref|YP_002006678.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224606|emb|CAQ70617.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 979

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/491 (41%), Positives = 291/491 (59%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  +A+W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENAEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D  G+ F+  Y  YEA     E K  ++VPA +LW  +L    ETG P++ +
Sbjct: 509 PSTCPDLHDKVGKAFEKAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++   AD +Y  + 
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLAKQADGSYALDH 628

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y VE+ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDA 688

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTP 374
           +        E + Y A +AS E+A   G Y+TY GS   +GIL  D          G   
Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYETYTGSLWDRGILPQDSLKLLAEERGGYLD 748

Query: 375 TDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            D+    DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 749 VDMSSSMDWTSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLV 868

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 927

Query: 552 DKTKMANAMAS 562
            +  + NA++S
Sbjct: 928 SRGSL-NAVSS 937



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/189 (41%), Positives = 115/189 (60%), Gaps = 1/189 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 756 DWTSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 815

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 816 YLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 875

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  +  
Sbjct: 876 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTVSRGSLNA 934

Query: 963 AMASKDTRS 971
             +  D+ S
Sbjct: 935 VSSGSDSGS 943



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  +A+W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENAEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D  G+ F+  Y  YEA+ 
Sbjct: 509 PSTCPDLHDKVGKAFEKAYLGYEAKA 534



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A +AS E+A   G Y+TY GS   
Sbjct: 668 MGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYQASTELAEERGRYETYTGSLWD 727

Query: 653 QGILQYDMW--------GVTPTDL---WDWAALKVLALVYGLK 684
           +GIL  D          G    D+    DW +L+     +G++
Sbjct: 728 RGILPQDSLKLLAEERGGYLDVDMSSSMDWTSLRARIKQHGMR 770



 Score = 41.2 bits (95), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   V  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 539 LKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 585


>gi|430808366|ref|ZP_19435481.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus sp.
           HMR-1]
 gi|429499277|gb|EKZ97715.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus sp.
           HMR-1]
          Length = 979

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/496 (40%), Positives = 289/496 (58%), Gaps = 20/496 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P +C  L D  G+ F+  Y  YEA     E K  ++VPA +LW  +L    ETG P++ +
Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++   AD TY  + 
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDH 628

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y VE+ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDA 688

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTP 374
           +        E + Y A +AS E+A   G Y TYEGS   +GIL  D          G   
Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLE 748

Query: 375 TDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            DL    DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 749 VDLSSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLV 868

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 927

Query: 552 DKTKMANAMASKDARS 567
            +  +    +  D +S
Sbjct: 928 QRGSLNAVSSGADGQS 943



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 756 DWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 815

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 816 YLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 875

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  + N
Sbjct: 876 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTVQRGSL-N 933

Query: 963 AMAS 966
           A++S
Sbjct: 934 AVSS 937



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 52/86 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +C  L D  G+ F+  Y  YEA+ 
Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKA 534



 Score = 43.1 bits (100), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A +AS E+A   G Y TYEGS   
Sbjct: 668 MGIMGFQDCLHVLRTPYASDAAVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWD 727

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 728 RGILPQD 734



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   V  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 539 LKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 585


>gi|452127278|ref|ZP_21939861.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           holmesii F627]
 gi|452130649|ref|ZP_21943221.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           holmesii H558]
 gi|451920574|gb|EMD70720.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           holmesii H558]
 gi|451922373|gb|EMD72518.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           holmesii F627]
          Length = 975

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/479 (41%), Positives = 283/479 (59%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV     W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDMFMKRVMEGGDWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G +F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGREFERAYLGYEAKAASGELKLFKKMPALSLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTYNFT- 263
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ P A+ ++    
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPTANGSFELDH 625

Query: 264 -KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y VE+ARNSNMRHRP+G+G+ G  D    MR+P+    
Sbjct: 626 DKIKRTVSIAMRMLDNVIDINYYAVEKARNSNMRHRPVGMGIMGFQDCLHMMRVPYASQA 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  ET+ Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 686 AIEFADRSMETVCYQAYWASSTLAEERGRYQSYEGSLWSRGILPQDSIAMLREERGGNVD 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDESSALDWNTLRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPAELRELYATAFEVEPSWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + AA R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T
Sbjct: 866 ECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTMGATSAEKST 923



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDESSALDWNTLRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPAELRELYATAFEVEPSWLV 865

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + AA R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T
Sbjct: 866 ECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTMGATSAEKST 923



 Score = 89.4 bits (220), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 51/86 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV     W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDMFMKRVMEGGDWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D +G +F+  Y  YEA+ 
Sbjct: 506 PSDCPDLHDKYGREFERAYLGYEAKA 531



 Score = 45.8 bits (107), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  ET+ Y A  AS  +A   G YQ+YEGS  S
Sbjct: 665 MGIMGFQDCLHMMRVPYASQAAIEFADRSMETVCYQAYWASSTLAEERGRYQSYEGSLWS 724

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 725 RGILPQD 731



 Score = 40.4 bits (93), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   +  L LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 536 LKLFKKMPALSLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVH 582


>gi|424940364|ref|ZP_18356127.1| catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa NCMG1179]
 gi|346056810|dbj|GAA16693.1| catalytic component of class Ia ribonucleotide reductase
           [Pseudomonas aeruginosa NCMG1179]
          Length = 963

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 299/523 (57%), Gaps = 22/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA       K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLVNHI--VNGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 EKTVKTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAIA 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A++ASC++A   G YQT++GS  SQGIL  D               V 
Sbjct: 684 FADQSMEAISYYAIQASCDLADERGAYQTFQGSLWSQGILPIDSEKKLIEERGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+    A  +   Q    A+ + A     C  DN  DC   Q
Sbjct: 922 GKLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DCEACQ 963



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 745 SETLDWAPLRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 803

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  + +++ A
Sbjct: 804 VINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETRWIVEAA 863

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 864 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 922

Query: 959 KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           K+    A  +   Q    A+ + A     C  DN  DC
Sbjct: 923 KLNAVSAGGNDGLQAAPAAEPKPAPVPQACSIDNP-DC 959



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGSWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     Q  E I Y A++ASC++A   G YQT++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAIAFADQSMEAISYYAIQASCDLADERGAYQTFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 41.6 bits (96), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LASYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|94312019|ref|YP_585229.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           metallidurans CH34]
 gi|93355871|gb|ABF09960.1| Ribonucleoside-diphosphate reductase alpha subunit [Cupriavidus
           metallidurans CH34]
          Length = 979

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/496 (40%), Positives = 289/496 (58%), Gaps = 20/496 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P +C  L D  G+ F+  Y  YEA     E K  ++VPA +LW  +L    ETG P++ +
Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKAANGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++   AD TY  + 
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLMQQADGTYVLDH 628

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y VE+ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDA 688

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTP 374
           +        E + Y A +AS E+A   G Y TYEGS   +GIL  D          G   
Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLD 748

Query: 375 TDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            DL    DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 749 VDLSSTMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLV 868

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 927

Query: 552 DKTKMANAMASKDARS 567
            +  +    +  D +S
Sbjct: 928 QRGSLNAVSSGADGQS 943



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 756 DWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 815

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 816 YLVRDLKERGLWDEVMVADLKYFDGSLARIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 875

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  + N
Sbjct: 876 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTVQRGSL-N 933

Query: 963 AMAS 966
           A++S
Sbjct: 934 AVSS 937



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 52/86 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P +C  L D  G+ F+  Y  YEA+ 
Sbjct: 509 PASCPDLHDKVGKAFEQAYLGYEAKA 534



 Score = 43.1 bits (100), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A +AS E+A   G Y TYEGS   
Sbjct: 668 MGIMGFQDCLHVLRTPYASDAAVKFADTSMEAVCYYAYQASTELAEERGRYSTYEGSLWD 727

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 728 RGILPQD 734



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   V  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 539 LKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 585


>gi|348171940|ref|ZP_08878834.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora spinosa NRRL 18395]
          Length = 795

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/480 (41%), Positives = 288/480 (60%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D QW+L  
Sbjct: 292 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEQWTLFS 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F + Y+ YE      E +  R+V A +LW  +L    ETG P++ +
Sbjct: 352 PDETPDLHDLYGKAFAERYRAYEQAADRGEIRVFRRVRAVELWRRMLTMLFETGHPWITF 411

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DEVAVCNL SI L  +++ AD   +  KL
Sbjct: 412 KDPCNLRSPQQHSGVVHSSNLCTEITLNTSSDEVAVCNLGSINLARHVD-ADGI-DAAKL 469

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRPIG+G+ G AD     R+P     +  
Sbjct: 470 ERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFADALFTQRIPVSSEAAVE 529

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
              +  E I Y A+ AS E+AA  G Y++++GS  +QG+L  D   +             
Sbjct: 530 FADRSMEQISYHAIAASSELAAERGRYESFDGSLWNQGVLPIDSLDLLADARGGDVDLDR 589

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL+E++   G+RNS ++A  PTA+ + I G N+S EP   N+Y +  +SG+F 
Sbjct: 590 SSTLDWEALRERVRTVGMRNSNVMAIAPTATISNICGVNQSIEPVYRNLYVKANMSGDFT 649

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+ DL + GLWD+ M   L  ++GS+  IE IPQ+LK+LY T +EI  + +++ A
Sbjct: 650 VVNPHLVADLKQAGLWDEAMIADLKFHDGSLLPIERIPQQLKELYATAFEIEPRWLVEAA 709

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y++  N   +  ++   W+ GLKT  YYLR+  A +  + T+  T
Sbjct: 710 ARRQKWIDQAQSLNLYVSRPNGRTLDELYRLAWRKGLKT-TYYLRSTSATHVEKSTLRGT 768



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+E++   G+RNS ++A  PTA+ + I G N+S EP   N+Y +  +SG+F VVN 
Sbjct: 594 DWEALRERVRTVGMRNSNVMAIAPTATISNICGVNQSIEPVYRNLYVKANMSGDFTVVNP 653

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+ DL + GLWD+ M   L  ++GS+  IE IPQ+LK+LY T +EI  + +++ AA R 
Sbjct: 654 HLVADLKQAGLWDEAMIADLKFHDGSLLPIERIPQQLKELYATAFEIEPRWLVEAAARRQ 713

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y++  N   +  ++   W+ GLKT  YYLR+  A +  + T+  T
Sbjct: 714 KWIDQAQSLNLYVSRPNGRTLDELYRLAWRKGLKT-TYYLRSTSATHVEKSTLRGT 768



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D QW+L  
Sbjct: 292 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEQWTLFS 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G+ F + Y+ YE
Sbjct: 352 PDETPDLHDLYGKAFAERYRAYE 374



 Score = 50.4 bits (119), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 74/182 (40%), Gaps = 22/182 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G AD     R+P     +     +  E I Y A+ AS E+AA  G Y++++GS  +
Sbjct: 506 LGLMGFADALFTQRIPVSSEAAVEFADRSMEQISYHAIAASSELAAERGRYESFDGSLWN 565

Query: 653 QGILQYDMWGVTP-----------TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYM 701
           QG+L  D   +             +   DW AL+      G++      +S +    P  
Sbjct: 566 QGVLPIDSLDLLADARGGDVDLDRSSTLDWEALRERVRTVGMR------NSNVMAIAPTA 619

Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
              + C    NQ    V   LY   N  +G  T  + + H    +K A   + A+I D  
Sbjct: 620 TISNICG--VNQSIEPVYRNLYVKANM-SGDFT--VVNPHLVADLKQAGLWDEAMIADLK 674

Query: 762 FN 763
           F+
Sbjct: 675 FH 676


>gi|54294661|ref|YP_127076.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Lens]
 gi|53754493|emb|CAH15977.1| hypothetical protein lpl1738 [Legionella pneumophila str. Lens]
          Length = 942

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 284/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    +PA KLW  +L    ETG P++ +
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTIPAVKLWRRMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 560 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDEQKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 618 KRTISTAIRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 678 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 737

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 738 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A
Sbjct: 798 VVNPYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAA 857

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 858 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 913



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 742 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A+ R 
Sbjct: 802 YLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKSRYATSFEIDPMWLVEAASRRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 862 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 919

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 920 AVKLIDT 926



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKA 525



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 654 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 713

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 714 KGILPID 720


>gi|383827738|ref|ZP_09982827.1| ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent/ribonucleoside-diphosphate
           reductase, alpha subunit [Saccharomonospora
           xinjiangensis XJ-54]
 gi|383460391|gb|EID52481.1| ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent/ribonucleoside-diphosphate
           reductase, alpha subunit [Saccharomonospora
           xinjiangensis XJ-54]
          Length = 822

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/481 (39%), Positives = 284/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DA+W+L  
Sbjct: 309 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAEWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE        +  R+V A++LW  +L    ETG P++ +
Sbjct: 369 PDEVPDLHDLYGTAFAERYRAYEEAADAGQIRVFRRVSAKQLWRRMLTMLFETGHPWITF 428

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  ++   +   +   L
Sbjct: 429 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHVG--ENGLDVEAL 486

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +D      + L+ +ID+NFY V EA  SN+RHRP+G+G+ G AD   ++ +P   + +  
Sbjct: 487 RDTVTTAVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFADALFELGIPQASDAAVE 546

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A+ AS ++A   G Y ++ GS  SQG+L  D               + 
Sbjct: 547 FADRSMEVLSYHAIAASADLAEERGTYPSFAGSLWSQGVLPIDSLRLLAQARGEGELDID 606

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF
Sbjct: 607 TTTTLDWDSLRERVRAGGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEF 666

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+RDL + GLWDD M  +L  ++G +  I+ +P  LK LY T +EI  + ++D 
Sbjct: 667 TVVNPHLVRDLKQRGLWDDAMVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLIDA 726

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  
Sbjct: 727 ASRRQKWIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRG 785

Query: 554 T 554
           T
Sbjct: 786 T 786



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/183 (40%), Positives = 117/183 (63%), Gaps = 1/183 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           +  T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SG
Sbjct: 605 IDTTTTLDWDSLRERVRAGGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSG 664

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN HL+RDL + GLWDD M  +L  ++G +  I+ +P  LK LY T +EI  + ++
Sbjct: 665 EFTVVNPHLVRDLKQRGLWDDAMVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLI 724

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+
Sbjct: 725 DAASRRQKWIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTL 783

Query: 956 DKT 958
             T
Sbjct: 784 RGT 786



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 54/83 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DA+W+L  
Sbjct: 309 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAEWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 369 PDEVPDLHDLYGTAFAERYRAYE 391



 Score = 41.2 bits (95), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G AD   ++ +P   + +     +  E + Y A+ AS ++A   G Y ++ GS  S
Sbjct: 523 LGLMGFADALFELGIPQASDAAVEFADRSMEVLSYHAIAASADLAEERGTYPSFAGSLWS 582

Query: 653 QGILQYD 659
           QG+L  D
Sbjct: 583 QGVLPID 589


>gi|383760081|ref|YP_005439067.1| ribonucleoside-diphosphate reductase, alpha subunit NrdA
           [Rubrivivax gelatinosus IL144]
 gi|381380751|dbj|BAL97568.1| ribonucleoside-diphosphate reductase, alpha subunit NrdA
           [Rubrivivax gelatinosus IL144]
          Length = 951

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/482 (41%), Positives = 283/482 (58%), Gaps = 19/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 437 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 496

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P++C  L D +G  F+D Y  YE      E +  +++PA+ LW  +L    ETG P++ +
Sbjct: 497 PSSCPDLHDKFGAAFEDAYVAYERKADQGEMRPFKRLPAKDLWRKMLTMLFETGHPWITF 556

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ++G +  SNLCTEI   TS  E+AVCNL SI L  ++  A    +  KL
Sbjct: 557 KDACNLRSPQQHVGVVHSSNLCTEITLNTSASEIAVCNLGSINLAQHV--AGGGIDQAKL 614

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V++AR++N+RHRP+G+G+ G  D   Q+RLP+    +  
Sbjct: 615 KRTVSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASEAAVE 674

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y GS   +G+L  D              V  
Sbjct: 675 FADRSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAARGGHVEVDR 734

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           ++  DWAAL+ +IA HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGEF 
Sbjct: 735 SETLDWAALRARIAAHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFT 794

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+RDL  LGLWDD M   L   +GS++ I+ +P +LK LY T +E+  + +++ A
Sbjct: 795 VVNEYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPDELKQLYATAFEVDARWLVEAA 854

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +A + T+   
Sbjct: 855 ARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKT-TYYLRTMSATHAEKSTVAPG 913

Query: 555 KM 556
            M
Sbjct: 914 AM 915



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 117/185 (63%), Gaps = 1/185 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  ++  DWAAL+ +IA HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSG
Sbjct: 732 VDRSETLDWAALRARIAAHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSG 791

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL  LGLWDD M   L   +GS++ I+ +P +LK LY T +E+  + ++
Sbjct: 792 EFTVVNEYLVRDLKRLGLWDDVMVMDLKHFDGSLRAIDRVPDELKQLYATAFEVDARWLV 851

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +A + T+
Sbjct: 852 EAAARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKT-TYYLRTMSATHAEKSTV 910

Query: 956 DKTKM 960
               M
Sbjct: 911 APGAM 915



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 50/83 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 437 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 496

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P++C  L D +G  F+D Y  YE
Sbjct: 497 PSSCPDLHDKFGAAFEDAYVAYE 519



 Score = 47.4 bits (111), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+RLP+    +     +  E + Y A  AS E+A   G Y +Y GS   
Sbjct: 651 LGLMGFQDCLYQLRLPYASEAAVEFADRSMEALCYHAYWASSELAEERGRYSSYRGSLWD 710

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +G+L  D              V  ++  DWAAL+     +G++
Sbjct: 711 RGVLPQDTLDLLAAARGGHVEVDRSETLDWAALRARIAAHGMR 753


>gi|388456663|ref|ZP_10138958.1| ribonucleotide-diphosphate reductase subunit alpha [Fluoribacter
           dumoffii Tex-KL]
          Length = 941

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/477 (41%), Positives = 282/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LWIPD FM RV  +  W+L  
Sbjct: 439 RKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMVRVRENGDWTLFS 498

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY++YE +      K  + V A KLW  +L    ETG P+M +
Sbjct: 499 PDEVPDLHDQYGKAFETLYREYEEKAHQGLIKNAKTVSAVKLWRKMLSMLFETGHPWMTF 558

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS++E+AVCNL SI L  +I       +  KL
Sbjct: 559 KDPCNLRSPQQHTGVVHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIKKG--KLDTDKL 616

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 617 RRTIKTAIRMLDNVIDINYYSVPQARNSNLKHRPIGLGLMGFQDALYELKIDYASPEAVE 676

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 677 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSISLLQQARDKYLEQDR 736

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW +L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 737 SQRLDWESLRIKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 796

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    ++D A
Sbjct: 797 VVNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAA 856

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 857 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWMRGLKT-TYYLRSLGASNAEKSTV 912



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/173 (45%), Positives = 111/173 (64%), Gaps = 1/173 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 741 DWESLRIKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 800

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    ++D A+ R 
Sbjct: 801 YLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPAELKQRYATSFEIDPIWLVDAASRRQ 860

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 861 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWMRGLKT-TYYLRSLGASNAEKSTV 912



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LWIPD FM RV  +  W+L  
Sbjct: 439 RKGAVCAYLECWHKDVEEFLELRKNTGDDRRRTHDMNTALWIPDLFMVRVRENGDWTLFS 498

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA---EGLV 88
           P+    L D +G+ F+ LY++YE    +GL+
Sbjct: 499 PDEVPDLHDQYGKAFETLYREYEEKAHQGLI 529



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 653 LGLMGFQDALYELKIDYASPEAVEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 712

Query: 653 QGILQYDMWGVTP-----------TDLWDWAALKVLALVYGLK 684
           +GIL  D   +             +   DW +L++     G++
Sbjct: 713 KGILPIDSISLLQQARDKYLEQDRSQRLDWESLRIKVRTQGMR 755



 Score = 41.2 bits (95), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V  +KLW  +L    ETG P+M +KD CN +S QQ+  V+ 
Sbjct: 535 VSAVKLWRKMLSMLFETGHPWMTFKDPCNLRSPQQHTGVVH 575


>gi|311103858|ref|YP_003976711.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans A8]
 gi|310758547|gb|ADP13996.1| ribonucleoside-diphosphate reductase, alpha subunit [Achromobacter
           xylosoxidans A8]
          Length = 976

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/479 (41%), Positives = 280/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G  F++ Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKYGRAFEEAYVGYEARVASGELKLFKKMPALNLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+    
Sbjct: 627 DKIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQS 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I KHG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKKHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+DLY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRDLYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW  L+ +I KHG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKKHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+DLY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRDLYATAFEVEPSWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D +G  F++ Y  YEA
Sbjct: 507 PSDCPDLHDKYGRAFEEAYVGYEA 530



 Score = 43.9 bits (102), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASQSAVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWS 725

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 726 RGILPQD 732



 Score = 40.4 bits (93), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   +  L LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 537 LKLFKKMPALNLWRKMLSMLFETGHPWITFKDPCNIRSPQQHVGVVH 583


>gi|406916516|gb|EKD55525.1| hypothetical protein ACD_60C00001G0002 [uncultured bacterium]
          Length = 938

 Score =  371 bits (952), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/483 (41%), Positives = 284/483 (58%), Gaps = 20/483 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  +A+W+L  
Sbjct: 436 RKGAVCGYLETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVIEEAEWTLFS 495

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D++GE F++ Y  YEA     E    +++PA  LW  +L    ETG P++ +
Sbjct: 496 PDEVPDLHDTYGEAFENAYTAYEAKAARGEIHNFKKLPAITLWRKMLGMLFETGHPWITF 555

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL SI L  ++   DK  N  KL
Sbjct: 556 KDVCNLRSPQQHTGVVHSSNLCTEITLNTSLDEIAVCNLGSINLTAHMT--DKGLNQEKL 613

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSNM+HRPIG+GV    D   Q+ +P+   E+  
Sbjct: 614 RRTIHTAIRMLDNVIDINYYSVPQARNSNMKHRPIGLGVMAFQDALYQLGIPYASKEAVE 673

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD--------- 376
              +  E I Y A+EAS  ++   GPY T+ GS  SQGIL  D   +   +         
Sbjct: 674 FADRSMELISYYAIEASTLLSEERGPYSTFHGSLWSQGILPIDSIELIAKERKGYVFKQN 733

Query: 377 ---LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DW  L++++ K G+RNS ++A  PTA+ A I G ++S EP   N++ +  LSGEF
Sbjct: 734 RSLTLDWETLRKRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEF 793

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+ DL +  LWDD M + L   +GS+  I  IP  LK LY T +E+    +++ 
Sbjct: 794 TVINPYLVTDLKKRDLWDDVMINDLKYYHGSVMKISRIPDSLKKLYATAFELDPSWLVEA 853

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+YMAE +  K+  ++   W++GLKT  YYLR+  A NA + T+  
Sbjct: 854 ASRRQKWIDQAQSLNLYMAEPSGKKLDQLYRLAWEMGLKT-TYYLRSSGATNAERSTVQD 912

Query: 554 TKM 556
           T +
Sbjct: 913 TVL 915



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++++ K G+RNS ++A  PTA+ A I G ++S EP   N++ +  LSGEF V+N 
Sbjct: 739 DWETLRKRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEFTVINP 798

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL +  LWDD M + L   +GS+  I  IP  LK LY T +E+    +++ A+ R 
Sbjct: 799 YLVTDLKKRDLWDDVMINDLKYYHGSVMKISRIPDSLKKLYATAFELDPSWLVEAASRRQ 858

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLN+YMAE +  K+  ++   W++GLKT  YYLR+  A NA + T+  T +
Sbjct: 859 KWIDQAQSLNLYMAEPSGKKLDQLYRLAWEMGLKT-TYYLRSSGATNAERSTVQDTVL 915



 Score = 93.6 bits (231), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 55/86 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  +A+W+L  
Sbjct: 436 RKGAVCGYLETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVIEEAEWTLFS 495

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D++GE F++ Y  YEA+ 
Sbjct: 496 PDEVPDLHDTYGEAFENAYTAYEAKA 521



 Score = 48.5 bits (114), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV    D   Q+ +P+   E+     +  E I Y A+EAS  ++   GPY T+ GS  S
Sbjct: 650 LGVMAFQDALYQLGIPYASKEAVEFADRSMELISYYAIEASTLLSEERGPYSTFHGSLWS 709

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 710 QGILPID 716


>gi|443471933|ref|ZP_21061970.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas pseudoalcaligenes KF707]
 gi|442902158|gb|ELS27799.1| Ribonucleotide reductase of class Ia (aerobic), alpha subunit
           [Pseudomonas pseudoalcaligenes KF707]
          Length = 959

 Score =  370 bits (951), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/523 (40%), Positives = 301/523 (57%), Gaps = 26/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P     L D +G+ F++ Y+ YEA       K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PADVPDLHDLYGKAFEERYEYYEALATYGKLKLHKVIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--IDGKLDVEKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V++ARNSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 GRTVKTAVRMLDNVIDINYYSVDQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAID 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              +  E I Y A++ASC++A   G Y+T++GS  SQGIL  D               V 
Sbjct: 684 FADKSMEAISYFAIQASCDLADERGAYETFQGSLWSQGILPIDSQKLLIEARGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 QSESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+ DL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+ NA++S      E +QA  + A     C  DN  DC   Q
Sbjct: 922 GKL-NAVSSV---IDEGLQAAPQPAPVPQACSIDNP-DCEACQ 959



 Score =  152 bits (383), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 132/221 (59%), Gaps = 7/221 (3%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  ++  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSG
Sbjct: 742 VDQSESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG 800

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V+N +L+ DL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++
Sbjct: 801 EFTVINPYLVHDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIV 860

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI
Sbjct: 861 DAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTI 919

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           +  K+ NA++S      E +QA  + A     C  DN  DC
Sbjct: 920 NTGKL-NAVSSV---IDEGLQAAPQPAPVPQACSIDNP-DC 955



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P     L D +G+ F++ Y+ YEA
Sbjct: 506 PADVPDLHDLYGKAFEERYEYYEA 529



 Score = 44.7 bits (104), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIAYGSDAAIDFADKSMEAISYFAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  ++    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LATYGKLKLHKVIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|325272775|ref|ZP_08139119.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
 gi|324102082|gb|EGB99584.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           TJI-51]
          Length = 959

 Score =  370 bits (951), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +IN  D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIN--DGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|333899976|ref|YP_004473849.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           fulva 12-X]
 gi|333115241|gb|AEF21755.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fulva 12-X]
          Length = 969

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 202/489 (41%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI  NM  +  D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSI--NMVNHIVDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 GRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E I Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADRSMEAISYYAIQASCDLADERGAYETFDGSLWSKGILPLDSQQILIEARGAKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++E++ K GVRNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 744 LDETLDWAPVRERV-KKGVRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVDTKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K GVRNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRERV-KKGVRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E I Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGLMGFQDALYLQHIPYGSDAAVEFADRSMEAISYYAIQASCDLADERGAYETFDGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 40.4 bits (93), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|33593915|ref|NP_881559.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis Tohama I]
 gi|384205220|ref|YP_005590959.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis CS]
 gi|408416636|ref|YP_006627343.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
           pertussis 18323]
 gi|33563989|emb|CAE43254.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           pertussis Tohama I]
 gi|332383334|gb|AEE68181.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           pertussis CS]
 gi|401778806|emb|CCJ64261.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           pertussis 18323]
          Length = 975

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/502 (40%), Positives = 294/502 (58%), Gaps = 21/502 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++ P A+  Y  N 
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELNH 625

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    +  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+   +
Sbjct: 626 DKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQD 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G YQ+YEGS  S+GIL  D              
Sbjct: 686 AIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVD 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T 
Sbjct: 866 ECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTG 924

Query: 552 DKTKMANAMASKDARSQEEIQA 573
              ++ NA+++ D  +   + A
Sbjct: 925 RGGEL-NAVSAGDHGAGSAVSA 945



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 753 DWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVKSNLSGEFTVVND 812

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    +++ A+ R 
Sbjct: 813 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQ 872

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T    ++ N
Sbjct: 873 KWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTGRGGEL-N 930

Query: 963 AMASKDTRSQEEIQA 977
           A+++ D  +   + A
Sbjct: 931 AVSAGDHGAGSAVSA 945



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G+ F+  Y  YEA+
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAK 530



 Score = 46.2 bits (108), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+   ++     +  E + Y A  AS E+A   G YQ+YEGS  S
Sbjct: 665 MGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWS 724

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 725 RGILPQD 731


>gi|399521496|ref|ZP_10762236.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           pseudoalcaligenes CECT 5344]
 gi|399110734|emb|CCH38796.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           pseudoalcaligenes CECT 5344]
          Length = 957

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/491 (40%), Positives = 289/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 435 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 494

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 495 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTF 554

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +IN  D   +  KL
Sbjct: 555 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHIN--DGKLDIEKL 612

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V++ARNSN +HRP+G+G+ G  D      + +  + +  
Sbjct: 613 GRTVKTAVRMLDNVIDINYYSVDQARNSNFKHRPVGLGLMGFQDALYLQHIAYGSDAAIE 672

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E I Y A++ASC++A   G Y T+EGS  S+GIL  D               V 
Sbjct: 673 FADKSMEAISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVD 732

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 733 LSESLDWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEF 791

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 792 TVINPYLVRDLKNRGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 851

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 852 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 910

Query: 554 TKMANAMASKD 564
            K+    A  D
Sbjct: 911 GKLNAVSAGGD 921



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 738 DWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 796

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D A+ R 
Sbjct: 797 YLVRDLKNRGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQ 856

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+  
Sbjct: 857 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKLNA 915

Query: 963 AMASKD 968
             A  D
Sbjct: 916 VSAGGD 921



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 435 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 494

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 495 PSEVPDLHDLTGKAFEERYEYYEA 518



 Score = 43.1 bits (100), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y T+EGS  S
Sbjct: 649 LGLMGFQDALYLQHIAYGSDAAIEFADKSMEAISYYAIQASCDLADERGSYSTFEGSLWS 708

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 709 KGILPLD 715



 Score = 40.4 bits (93), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 519 LIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 571


>gi|389845522|ref|YP_006347761.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
           mediterranei ATCC 33500]
 gi|448616862|ref|ZP_21665572.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
           mediterranei ATCC 33500]
 gi|388242828|gb|AFK17774.1| ribonucleoside-diphosphate reductase alpha chain [Haloferax
           mediterranei ATCC 33500]
 gi|445751517|gb|EMA02954.1| ribonucleoside-diphosphate reductase subunit alpha [Haloferax
           mediterranei ATCC 33500]
          Length = 821

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/506 (38%), Positives = 295/506 (58%), Gaps = 26/506 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A YL  WH D  DFL+LK+NTG E  R  D+    W+PD FM+RVE+D  W+L  
Sbjct: 296 RRGAAAAYLACWHIDFPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVEADESWTLFS 355

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE---AEGKF--IRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L +++G +F+  Y++YE    EG+     +V A  LW  +L    ETG P++ +
Sbjct: 356 PDEVPDLHETYGSEFEARYEEYEQLAEEGEIDQFERVEAADLWRTMLTRLFETGHPWITF 415

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q ++GT+  SNLCTEI   TS +E AVCNL SI L+ ++      ++  KL
Sbjct: 416 KDPCNVRSPQDHVGTVHSSNLCTEITLNTSSEETAVCNLGSINLSQHVAADGDGFDREKL 475

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            + A+   + L+ ++D+NFYP + A  SNMRHRP+G+G+ G  D  +++ +P    ++  
Sbjct: 476 AETAETAMRMLDNVVDLNFYPTDRAERSNMRHRPVGLGMMGFHDALVELGVPMASADAVD 535

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
           +     E + Y A+  S ++AA  G Y+TY GS   +G+L  D   +             
Sbjct: 536 VASDAAELLAYHAILGSSKLAAERGTYETYAGSKWDRGLLPQDTVDMLEAERGREIPLDR 595

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T+  DW  ++E +A+HG+RNS  +A  PTA+ + I G   S EP  SN+Y +  +SG+F 
Sbjct: 596 TETLDWERVREHVAEHGMRNSNTMAVAPTATISTIAGTTPSIEPRYSNLYVKSNMSGDFT 655

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+ DL   GLWD  M+D L  ++GS+ DIE IP+++++L++  +EI  + +L + 
Sbjct: 656 VVNEHLVSDLEAEGLWDAQMRDLLTYHDGSVADIEAIPEEIRELHRGAFEIDPRHLLHLT 715

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK- 553
           A R  +IDQSQS N++    +   ++ ++   WKLGLKT  YYLRT  A+   + T+D  
Sbjct: 716 AQRAVWIDQSQSHNVFFPSTDGELLNEVYRTAWKLGLKT-TYYLRTLGASQIEKSTLDTS 774

Query: 554 ----TKMANAMASKDA----RSQEEI 571
               T+  N+ A+ D     +S EE+
Sbjct: 775 EYDDTQFRNSSATDDEDVPDKSPEEV 800



 Score =  154 bits (390), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/206 (39%), Positives = 126/206 (61%), Gaps = 10/206 (4%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T+  DW  ++E +A+HG+RNS  +A  PTA+ + I G   S EP  SN+Y +  +SG+F 
Sbjct: 596 TETLDWERVREHVAEHGMRNSNTMAVAPTATISTIAGTTPSIEPRYSNLYVKSNMSGDFT 655

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           VVN HL+ DL   GLWD  M+D L  ++GS+ DIE IP+++++L++  +EI  + +L + 
Sbjct: 656 VVNEHLVSDLEAEGLWDAQMRDLLTYHDGSVADIEAIPEEIRELHRGAFEIDPRHLLHLT 715

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK- 957
           A R  +IDQSQS N++    +   ++ ++   WKLGLKT  YYLRT  A+   + T+D  
Sbjct: 716 AQRAVWIDQSQSHNVFFPSTDGELLNEVYRTAWKLGLKT-TYYLRTLGASQIEKSTLDTS 774

Query: 958 ----TKMANAMASKDT----RSQEEI 975
               T+  N+ A+ D     +S EE+
Sbjct: 775 EYDDTQFRNSSATDDEDVPDKSPEEV 800



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 53/83 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A YL  WH D  DFL+LK+NTG E  R  D+    W+PD FM+RVE+D  W+L  
Sbjct: 296 RRGAAAAYLACWHIDFPDFLDLKRNTGDERRRTHDMNTAAWVPDLFMKRVEADESWTLFS 355

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L +++G +F+  Y++YE
Sbjct: 356 PDEVPDLHETYGSEFEARYEEYE 378


>gi|339327268|ref|YP_004686961.1| ribonucleoside-diphosphate reductase subunit alpha [Cupriavidus
           necator N-1]
 gi|338167425|gb|AEI78480.1| ribonucleoside-diphosphate reductase subunit alpha [Cupriavidus
           necator N-1]
          Length = 977

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 201/485 (41%), Positives = 285/485 (58%), Gaps = 20/485 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P TC  L D  G++F+  Y  YEA     E K  +++PA +LW  +L    ETG P++ +
Sbjct: 507 PATCPDLHDKVGKEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++   AD TY  + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMTKQADGTYALDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y V++ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 627 AKLQKTVRTAMRMLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTP 374
           +        E + Y A +AS E+A   G Y TYEGS   +GIL  D          G   
Sbjct: 687 AVKFADTSMEAVCYYAYKASTELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLD 746

Query: 375 TDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            DL    DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDLSSTMDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 867 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 925

Query: 552 DKTKM 556
            +  +
Sbjct: 926 SRGSL 930



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 754 DWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 813

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 814 YLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 873

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  +
Sbjct: 874 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTVSRGSL 930



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C  L D  G++F+  Y  YEA+ 
Sbjct: 507 PATCPDLHDKVGKEFEKAYLGYEAKA 532



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A +AS E+A   G Y TYEGS   
Sbjct: 666 MGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYKASTELAEERGRYSTYEGSLWD 725

Query: 653 QGILQYDMW--------GVTPTDL---WDWAALKVLALVYGLK 684
           +GIL  D          G    DL    DW AL+     +G++
Sbjct: 726 RGILPQDSLKLLAEERGGYLDVDLSSTMDWDALRARIKQHGMR 768



 Score = 40.4 bits (93), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   +  L+LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 537 LKLFKKLPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 583


>gi|332526549|ref|ZP_08402661.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
 gi|332110817|gb|EGJ10994.1| ribonucleotide-diphosphate reductase subunit alpha [Rubrivivax
           benzoatilyticus JA2]
          Length = 950

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 198/482 (41%), Positives = 283/482 (58%), Gaps = 19/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 437 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 496

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P++C  L D +G  F+  Y  YE      E +  +++PAR LW  +L    ETG P++ +
Sbjct: 497 PSSCPDLHDKFGAAFEQAYVAYERKADRGEIRPFKRLPARDLWRKMLTMLFETGHPWITF 556

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ++G +  SNLCTEI   TS  E+AVCNL SI L  ++  A    +  KL
Sbjct: 557 KDACNLRSPQQHVGVVHSSNLCTEITLNTSAGEIAVCNLGSINLAQHV--AGGGIDQAKL 614

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V++AR++N+RHRP+G+G+ G  D   Q+RLP+  + +  
Sbjct: 615 KRTVSTAMRMLDNVIDINYYAVKKARDANLRHRPVGLGLMGFQDCLYQLRLPYASDAAVE 674

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y GS   +G+L  D              V  
Sbjct: 675 FADRSMEALCYHAYWASSELAEERGRYSSYRGSLWDRGVLPQDTLDLLAAERGGHVEVDR 734

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           ++  DWAAL+ +IA HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGEF 
Sbjct: 735 SETLDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFT 794

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+RDL  LGLWDD M   L   +GS++ ++ +P +LK LY T +E+  + +++ A
Sbjct: 795 VVNEYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLVEAA 854

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +A + T+   
Sbjct: 855 ARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKT-TYYLRTMSATHAEKSTVAPG 913

Query: 555 KM 556
            M
Sbjct: 914 AM 915



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 1/185 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  ++  DWAAL+ +IA HG+RNS  +A  PTA+ + I+G + S EP   N+  +  LSG
Sbjct: 732 VDRSETLDWAALRARIAVHGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSG 791

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL  LGLWDD M   L   +GS++ ++ +P +LK LY T +E+  + ++
Sbjct: 792 EFTVVNEYLVRDLKRLGLWDDVMVMDLKHFDGSLRAVDRVPDELKQLYATAFEVDARWLV 851

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +A + T+
Sbjct: 852 EAAARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWTRGLKT-TYYLRTMSATHAEKSTV 910

Query: 956 DKTKM 960
               M
Sbjct: 911 APGAM 915



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 49/83 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 437 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 496

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P++C  L D +G  F+  Y  YE
Sbjct: 497 PSSCPDLHDKFGAAFEQAYVAYE 519



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+RLP+  + +     +  E + Y A  AS E+A   G Y +Y GS   
Sbjct: 651 LGLMGFQDCLYQLRLPYASDAAVEFADRSMEALCYHAYWASSELAEERGRYSSYRGSLWD 710

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +G+L  D              V  ++  DWAAL+    V+G++
Sbjct: 711 RGVLPQDTLDLLAAERGGHVEVDRSETLDWAALRARIAVHGMR 753


>gi|104780528|ref|YP_607026.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95109515|emb|CAK14216.1| ribonucleoside diphosphate reductase, alpha subunit [Pseudomonas
           entomophila L48]
          Length = 958

 Score =  370 bits (949), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 565 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 623 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 683 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 742

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T+  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 743 LTESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 801

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 802 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 861

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 862 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 920

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 921 GKL-NAVSS 928



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/188 (44%), Positives = 122/188 (64%), Gaps = 3/188 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T+  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 744 TESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 802

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A
Sbjct: 803 VINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAA 862

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 863 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTG 921

Query: 959 KMANAMAS 966
           K+ NA++S
Sbjct: 922 KL-NAVSS 928



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEA 528



 Score = 46.6 bits (109), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 659 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 718

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 719 KGILPLD 725



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 529 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 581


>gi|373852168|ref|ZP_09594968.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
            bacterium TAV5]
 gi|391231103|ref|ZP_10267309.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
            bacterium TAV1]
 gi|372474397|gb|EHP34407.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
            bacterium TAV5]
 gi|391220764|gb|EIP99184.1| ribonucleoside-diphosphate reductase, alpha subunit [Opitutaceae
            bacterium TAV1]
          Length = 1110

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 202/480 (42%), Positives = 282/480 (58%), Gaps = 17/480 (3%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R G+   YLE WH DIF+FLEL+KNTG +  R  D+    WIPD FM+R+E+   W+L  
Sbjct: 587  RKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEAREHWTLFR 646

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEA---EGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
             N    L + +G KF++ Y +YE    EGK   Q + A +LW  +L    ETG P++ +K
Sbjct: 647  SNEAPDLHELYGRKFEEAYLRYEKLAEEGKITGQRIEALELWKKMLSMLFETGHPWITFK 706

Query: 207  DACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLK 266
            DACN +S Q ++G I  SNLCTEI   TS DE AVCNL SI L  ++ P D + +  KL+
Sbjct: 707  DACNLRSPQDHVGVIHSSNLCTEITLNTSNDETAVCNLGSIILETHLRP-DGSIDHDKLR 765

Query: 267  DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            D  +   + L+ +ID+NFYP + A  SN RHRPIG+GV GLA+        F   E+   
Sbjct: 766  DTIRTAVRALDNVIDINFYPTKPAETSNRRHRPIGLGVMGLANSLYLRGHAFASPEAVEF 825

Query: 327  NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------TPTDL--- 377
            N +  E I Y A EAS ++AA  G Y TY+GS   +GIL  D   +       P ++   
Sbjct: 826  NDEAMEAIAYYAYEASSDLAAERGAYSTYKGSKWDRGILPQDTVDLLEQERGVPVEVPRG 885

Query: 378  --WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
               DW  L+ KIA+ G+RNS ++A  PTA+ + I   +   EP   N++ +  LSGEF V
Sbjct: 886  GKLDWTPLRAKIARQGMRNSNVLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFIV 945

Query: 436  VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
            +N +L+RDL   GLW+  M D L   +G ++DI+ IP  LK+ Y+T + I  K V+D AA
Sbjct: 946  LNPYLVRDLKARGLWNQEMIDNLKYFDGELRDIDTIPADLKEKYRTAFGIDHKWVIDAAA 1005

Query: 496  DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555
             R  +IDQSQS+N+++   +   +S M+ H W +GLKT  YYLRT  A+N  + T+   K
Sbjct: 1006 RRQKWIDQSQSVNLWLETPDLKTLSHMYRHAWHVGLKT-TYYLRTLGASNIEKATVSVKK 1064



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%)

Query: 783  DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            DW  L+ KIA+ G+RNS ++A  PTA+ + I   +   EP   N++ +  LSGEF V+N 
Sbjct: 889  DWTPLRAKIARQGMRNSNVLAIAPTATISNITATSPCIEPTYKNLFVKSNLSGEFIVLNP 948

Query: 843  HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            +L+RDL   GLW+  M D L   +G ++DI+ IP  LK+ Y+T + I  K V+D AA R 
Sbjct: 949  YLVRDLKARGLWNQEMIDNLKYFDGELRDIDTIPADLKEKYRTAFGIDHKWVIDAAARRQ 1008

Query: 903  AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
             +IDQSQS+N+++   +   +S M+ H W +GLKT  YYLRT  A+N  + T+   K
Sbjct: 1009 KWIDQSQSVNLWLETPDLKTLSHMYRHAWHVGLKT-TYYLRTLGASNIEKATVSVKK 1064



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+   YLE WH DIF+FLEL+KNTG +  R  D+    WIPD FM+R+E+   W+L  
Sbjct: 587 RKGSGCAYLETWHNDIFEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRMEAREHWTLFR 646

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
            N    L + +G KF++ Y +YE
Sbjct: 647 SNEAPDLHELYGRKFEEAYLRYE 669



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%)

Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
           A    R ++   +GV GLA+        F   E+   N +  E I Y A EAS ++AA  
Sbjct: 789 AETSNRRHRPIGLGVMGLANSLYLRGHAFASPEAVEFNDEAMEAIAYYAYEASSDLAAER 848

Query: 641 GPYQTYEGSPVSQGILQYD 659
           G Y TY+GS   +GIL  D
Sbjct: 849 GAYSTYKGSKWDRGILPQD 867


>gi|375100292|ref|ZP_09746555.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora cyanea NA-134]
 gi|374661024|gb|EHR60902.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora cyanea NA-134]
          Length = 821

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/524 (37%), Positives = 297/524 (56%), Gaps = 29/524 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVETDEDWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE      E +  R+V A++LW  +L    ETG P++ +
Sbjct: 369 PDEVSDLHDLYGTAFAERYRAYEEAADAGEIRVFRRVSAKQLWRRMLTMLFETGHPWITF 428

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  ++   +   +   L
Sbjct: 429 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHVG--EDGLDVEAL 486

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V EA  SN+RHRP+G+G+ G +D   ++ +P     +  
Sbjct: 487 RRTVTTAVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGVPQASQAAVE 546

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A+ AS ++A   G Y +++GS  S+GIL  D               + 
Sbjct: 547 FADRSMEVLSYHAISASADLAEERGAYSSFDGSLWSRGILPIDSLRLLAEARGEGELDID 606

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF
Sbjct: 607 TTTTLDWESLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEF 666

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+RDL   GLWDD+M  +L  ++G +  I+ IP  LK LY T +EI  + ++D 
Sbjct: 667 TVVNPHLVRDLKRRGLWDDDMVAELKFHDGVLAPIDRIPDDLKALYATAFEIDSRWLVDA 726

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  
Sbjct: 727 ASRRQKWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRG 785

Query: 554 TK-MANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           T    NA+          + A   +A A   CR D+  DC   Q
Sbjct: 786 TDGRLNAVTPT-------VPAAVVEASATAACRIDDP-DCEACQ 821



 Score =  153 bits (386), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 130/219 (59%), Gaps = 10/219 (4%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF 
Sbjct: 608 TTTLDWESLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFT 667

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           VVN HL+RDL   GLWDD+M  +L  ++G +  I+ IP  LK LY T +EI  + ++D A
Sbjct: 668 VVNPHLVRDLKRRGLWDDDMVAELKFHDGVLAPIDRIPDDLKALYATAFEIDSRWLVDAA 727

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  T
Sbjct: 728 SRRQKWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRGT 786

Query: 959 K-MANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
               NA+          + A   +A A   CR D+  DC
Sbjct: 787 DGRLNAVTPT-------VPAAVVEASATAACRIDDP-DC 817



 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVETDEDWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 369 PDEVSDLHDLYGTAFAERYRAYE 391


>gi|73542625|ref|YP_297145.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha JMP134]
 gi|72120038|gb|AAZ62301.1| Ribonucleoside-diphosphate reductase [Ralstonia eutropha JMP134]
          Length = 979

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 201/491 (40%), Positives = 289/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D  G+ F+  Y  YEA     E K  ++VPA +LW  +L    ETG P++ +
Sbjct: 509 PSTCPDLHDKVGKAFEQAYLGYEAKAASGELKLFKKVPAMQLWRKMLGMLFETGHPWITF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++   AD +Y  + 
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHLTKQADGSYVLDH 628

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y VE+ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 629 AKLQKTIRTAMRMLDNVIDINYYAVEKARNSNLRHRPVGMGIMGFQDCLHVLRTPYASDA 688

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +        E + Y A +AS E+A   G Y+TY GS   +GIL  D              
Sbjct: 689 AVKFADTSMEAVCYYAYQASTELAEERGRYETYAGSLWDRGILPQDSLKLLAEERGGYLE 748

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 749 VDHSSSMDWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 808

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 809 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLV 868

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 869 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 927

Query: 552 DKTKMANAMAS 562
            +  + NA++S
Sbjct: 928 SRGSL-NAVSS 937



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 116/184 (63%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 756 DWDSLRGRIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 815

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 816 YLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 875

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  + N
Sbjct: 876 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTVSRGSL-N 933

Query: 963 AMAS 966
           A++S
Sbjct: 934 AVSS 937



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 52/86 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMENGEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D  G+ F+  Y  YEA+ 
Sbjct: 509 PSTCPDLHDKVGKAFEQAYLGYEAKA 534



 Score = 41.6 bits (96), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A +AS E+A   G Y+TY GS   
Sbjct: 668 MGIMGFQDCLHVLRTPYASDAAVKFADTSMEAVCYYAYQASTELAEERGRYETYAGSLWD 727

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 728 RGILPQD 734



 Score = 40.8 bits (94), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   V  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 539 LKLFKKVPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 585


>gi|134097870|ref|YP_001103531.1| ribonucleoside-diphosphate reductase subunit alpha
           [Saccharopolyspora erythraea NRRL 2338]
 gi|291007411|ref|ZP_06565384.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
 gi|133910493|emb|CAM00606.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharopolyspora erythraea NRRL 2338]
          Length = 782

 Score =  369 bits (948), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 283/480 (58%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEFMRRVE+D  W+L  
Sbjct: 269 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFMRRVEADGTWTLFS 328

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE      E K  RQV A  LW  +L    ETG P++ +
Sbjct: 329 PDETPDLHDLYGTAFAERYRAYERAAERGEIKVYRQVRAVDLWRRMLTMLFETGHPWITF 388

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS+DEVAVCNL S+ L  ++  AD   +  +L
Sbjct: 389 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSRDEVAVCNLGSVNLARHVT-ADGI-DHERL 446

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRPIG+G+ G +D     R+P     +  
Sbjct: 447 ERTTRTAVRMLDNVIDINFYTIPEARRSNLRHRPIGLGLMGFSDALFAQRIPVSSQAAVE 506

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
              +  E I Y A+ AS ++AA  G Y+++EGS  SQG+L  D   +             
Sbjct: 507 FADRSMEEISYHAISASADLAAERGRYESFEGSLWSQGVLPIDSLALLEQARDGHVDLDR 566

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T   DW AL+E++   G+RNS ++A  PTA+ A I G  +S EP   N+Y +  +SG+F 
Sbjct: 567 TMTRDWGALRERVRAVGMRNSNVMAIAPTATIANICGVGQSIEPIYRNLYVKSNMSGDFT 626

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+ DL   GLWD++M   L  ++GS+  I  IP +LK+LY T +E+  + +++ A
Sbjct: 627 VVNPHLVADLKAAGLWDEDMLADLKFHDGSLDPISRIPGELKELYATAFEVEPRWLVEAA 686

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y+A  +  K+  ++   W+ GLKT  YYLR+  A +  + T+  T
Sbjct: 687 ARRQKWIDQAQSLNLYVAAPSGRKLDELYRLAWRQGLKT-TYYLRSTSATHVEKSTLRGT 745



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 112/176 (63%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+E++   G+RNS ++A  PTA+ A I G  +S EP   N+Y +  +SG+F VVN 
Sbjct: 571 DWGALRERVRAVGMRNSNVMAIAPTATIANICGVGQSIEPIYRNLYVKSNMSGDFTVVNP 630

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+ DL   GLWD++M   L  ++GS+  I  IP +LK+LY T +E+  + +++ AA R 
Sbjct: 631 HLVADLKAAGLWDEDMLADLKFHDGSLDPISRIPGELKELYATAFEVEPRWLVEAAARRQ 690

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+A  +  K+  ++   W+ GLKT  YYLR+  A +  + T+  T
Sbjct: 691 KWIDQAQSLNLYVAAPSGRKLDELYRLAWRQGLKT-TYYLRSTSATHVEKSTLRGT 745



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEFMRRVE+D  W+L  
Sbjct: 269 RKGAVCAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFMRRVEADGTWTLFS 328

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 329 PDETPDLHDLYGTAFAERYRAYE 351



 Score = 48.5 bits (114), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G +D     R+P     +     +  E I Y A+ AS ++AA  G Y+++EGS  S
Sbjct: 483 LGLMGFSDALFAQRIPVSSQAAVEFADRSMEEISYHAISASADLAAERGRYESFEGSLWS 542

Query: 653 QGILQYDMWGVTP-----------TDLWDWAALKVLALVYGLK 684
           QG+L  D   +             T   DW AL+      G++
Sbjct: 543 QGVLPIDSLALLEQARDGHVDLDRTMTRDWGALRERVRAVGMR 585


>gi|302525966|ref|ZP_07278308.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
 gi|302434861|gb|EFL06677.1| ribonucleoside-diphosphate reductase, alpha subunit [Streptomyces
           sp. AA4]
          Length = 967

 Score =  369 bits (947), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/481 (40%), Positives = 284/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE++A+W+L  
Sbjct: 452 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEANAEWTLFS 511

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G  F   Y++YEA     E K  R+V A +LW  +L    ETG P++ +
Sbjct: 512 PNETPDLHDLYGNAFAQRYREYEAAAARGEIKVFRKVRAVELWRRMLTMLFETGHPWITF 571

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+ DEVAVCNL S+ L  ++ P  +  +  +L
Sbjct: 572 KDPCNLRSPQQHVGVVHSSNLCTEITLNTTTDEVAVCNLGSVNLLKHVTP--EGLDTERL 629

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRP+G+G+ G  D   ++ +PF   E+  
Sbjct: 630 EKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFELGVPFASEEAVK 689

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL------------QYDMWGVT 373
                 E + Y A+ AS ++A   G YQT+EGS  S+GIL            Q D   V 
Sbjct: 690 FADVSMEHLSYYAISASTDLAEERGQYQTFEGSLWSKGILPIDSMQLLIDARQGDGLDVD 749

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N+Y +  +SG+F
Sbjct: 750 TSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKSNMSGDF 809

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL++ L   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  K ++D 
Sbjct: 810 TVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDA 869

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  + T+  
Sbjct: 870 GSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRAQSATHVEKSTLRG 928

Query: 554 T 554
           T
Sbjct: 929 T 929



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 1/187 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N+Y + 
Sbjct: 744 DGLDVDTSTTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLYVKS 803

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SG+F VVN HL++ L   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  
Sbjct: 804 NMSGDFTVVNPHLVKSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 863

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++D  + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  
Sbjct: 864 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRAQSATHVE 922

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 923 KSTLRGT 929



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 55/84 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE++A+W+L  
Sbjct: 452 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEANAEWTLFS 511

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G  F   Y++YEA
Sbjct: 512 PNETPDLHDLYGNAFAQRYREYEA 535



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +G+ G  D   ++ +PF   E+        E + Y A+ AS ++A   
Sbjct: 654 ARRSNLRHRPVGLGIMGFQDALFELGVPFASEEAVKFADVSMEHLSYYAISASTDLAEER 713

Query: 641 GPYQTYEGSPVSQGIL------------QYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G YQT+EGS  S+GIL            Q D   V  +   DWA L+      G++
Sbjct: 714 GQYQTFEGSLWSKGILPIDSMQLLIDARQGDGLDVDTSTTLDWAPLRERVKTVGMR 769



 Score = 41.6 bits (96), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +KV   V  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 542 IKVFRKVRAVELWRRMLTMLFETGHPWITFKDPCNLRSPQQHVGVVH 588


>gi|113869189|ref|YP_727678.1| ribonucleotide-diphosphate reductase subunit alpha [Ralstonia
           eutropha H16]
 gi|113527965|emb|CAJ94310.1| Ribonucleoside-diphosphate reductase alpha subunit [Ralstonia
           eutropha H16]
          Length = 977

 Score =  369 bits (947), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/491 (41%), Positives = 289/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P TC  L D  G++F+  Y  YEA     E K  +++PA +LW  +L    ETG P++ +
Sbjct: 507 PATCPDLHDKVGKEFEKAYLGYEAKAASGELKLFKKLPALQLWRKMLGMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-NPADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++   AD TY  + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMAKQADGTYALDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y V++ARNSN+RHRP+G+G+ G  D    +R P+  + 
Sbjct: 627 AKLQKTVRTAMRMLDNVIDINYYAVDKARNSNLRHRPVGMGIMGFQDCLHVLRTPYSSDA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTP 374
           +        E + Y A  AS E+A   G Y +YEGS   +GIL  D          G   
Sbjct: 687 AVKFADTSMEAVCYYAYHASTELAEERGRYSSYEGSLWDRGILPQDSLKLLAEERGGYLD 746

Query: 375 TDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
            D+    DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDMSATMDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 867 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKT-TYYLRTMAATHVEKSTV 925

Query: 552 DKTKMANAMAS 562
            +  + NA++S
Sbjct: 926 SRGSL-NAVSS 935



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 1/189 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 754 DWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 813

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL E GLWD+ M   L   +GS+  I+ IPQ L+D+Y T +E+    +++ A+ R 
Sbjct: 814 YLVRDLKERGLWDEVMVADLKYFDGSLSRIDRIPQDLRDIYATAFEVEPTWLVEAASRRQ 873

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+ +  +  
Sbjct: 874 KWIDQAQSLNIYMAGASGKKLDDTYKLAWVRGLKT-TYYLRTMAATHVEKSTVSRGSLNA 932

Query: 963 AMASKDTRS 971
             +  D+ S
Sbjct: 933 VSSGSDSGS 941



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C  L D  G++F+  Y  YEA+ 
Sbjct: 507 PATCPDLHDKVGKEFEKAYLGYEAKA 532



 Score = 42.4 bits (98), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+  + +        E + Y A  AS E+A   G Y +YEGS   
Sbjct: 666 MGIMGFQDCLHVLRTPYSSDAAVKFADTSMEAVCYYAYHASTELAEERGRYSSYEGSLWD 725

Query: 653 QGILQYDMW--------GVTPTDL---WDWAALKVLALVYGLK 684
           +GIL  D          G    D+    DW AL+     +G++
Sbjct: 726 RGILPQDSLKLLAEERGGYLDVDMSATMDWDALRARIKQHGMR 768



 Score = 40.4 bits (93), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   +  L+LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 537 LKLFKKLPALQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 583


>gi|385674981|ref|ZP_10048909.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
           sp. ATCC 39116]
          Length = 928

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/481 (40%), Positives = 284/481 (59%), Gaps = 21/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 416 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 475

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F   Y++YEA     E +  R+V A +LW  +L    ETG P++ +
Sbjct: 476 PDETPDLHDLYGNAFAQRYREYEAAADRGEIRVFRRVRAVELWRRMLTMLFETGHPWITF 535

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DEVAVCNL S+ L  +++  D   +  KL
Sbjct: 536 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVS--DGGLDTAKL 593

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ ++D+NFY + EAR SN+RHRP+G+G+ G  D    + LP D  E+  
Sbjct: 594 ERTVRTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGLMGYQDALFTLGLPVDSPEAVE 653

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL------------QYDMWGVT 373
              +  E + Y A+ AS ++A   G Y+T+EGS  SQG+L            Q D   V 
Sbjct: 654 FADRSMEHLSYHAIAASAQLARERGAYETFEGSLWSQGVLPLDSLRLLAEARQGDALEVD 713

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW AL+E + + G+RNS ++A  PTA+ + I G  +S EP   N+Y +  +SG+F
Sbjct: 714 SSSTLDWDALRE-VVRGGMRNSNVMAIAPTATISNICGVGQSIEPLFQNLYVKSNMSGDF 772

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+  L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  + ++D 
Sbjct: 773 TVVNPHLVAALKERGLWDEAMVADLKYFDGSLAQIDRVPADLKRLYATAFEIDSRWLVDA 832

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR K A +  + T+  
Sbjct: 833 ASRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRAKAATSVEKSTLRG 891

Query: 554 T 554
           T
Sbjct: 892 T 892



 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 2/187 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DW AL+E + + G+RNS ++A  PTA+ + I G  +S EP   N+Y + 
Sbjct: 708 DALEVDSSSTLDWDALRE-VVRGGMRNSNVMAIAPTATISNICGVGQSIEPLFQNLYVKS 766

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SG+F VVN HL+  L E GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  
Sbjct: 767 NMSGDFTVVNPHLVAALKERGLWDEAMVADLKYFDGSLAQIDRVPADLKRLYATAFEIDS 826

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D A+ R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR K A +  
Sbjct: 827 RWLVDAASRRQKWIDQAQSLNLYIAAPSGRKLDELYRYAWHKGLKT-TYYLRAKAATSVE 885

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 886 KSTLRGT 892



 Score = 93.2 bits (230), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 55/84 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 416 RKGAACAYLETWHIDVEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 475

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G  F   Y++YEA
Sbjct: 476 PDETPDLHDLYGNAFAQRYREYEA 499



 Score = 48.9 bits (115), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 12/95 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    + LP D  E+     +  E + Y A+ AS ++A   G Y+T+EGS  S
Sbjct: 630 LGLMGYQDALFTLGLPVDSPEAVEFADRSMEHLSYHAIAASAQLARERGAYETFEGSLWS 689

Query: 653 QGIL------------QYDMWGVTPTDLWDWAALK 675
           QG+L            Q D   V  +   DW AL+
Sbjct: 690 QGVLPLDSLRLLAEARQGDALEVDSSSTLDWDALR 724



 Score = 41.2 bits (95), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 670 DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           D   ++V   V  ++LW  +L    ETG P++ +KD CN +S QQ+  V+ 
Sbjct: 502 DRGEIRVFRRVRAVELWRRMLTMLFETGHPWITFKDPCNLRSPQQHAGVVH 552


>gi|146308171|ref|YP_001188636.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina ymp]
 gi|145576372|gb|ABP85904.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           mendocina ymp]
          Length = 968

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 200/491 (40%), Positives = 288/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--VDGKLDIEKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 GRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E I Y A++ASC++A   G Y T+EGS  S+GIL  D               V 
Sbjct: 684 FADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSESLDWAPLRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKD 564
            K+    A  D
Sbjct: 922 GKLNAVSAGGD 932



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA L+E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPLRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+  
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKLNA 926

Query: 963 AMASKD 968
             A  D
Sbjct: 927 VSAGGD 932



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 43.5 bits (101), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y T+EGS  S
Sbjct: 660 LGLMGFQDALYLQHIAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGAYSTFEGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 40.4 bits (93), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|120556761|ref|YP_961112.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           aquaeolei VT8]
 gi|120326610|gb|ABM20925.1| ribonucleoside-diphosphate reductase, alpha subunit [Marinobacter
           aquaeolei VT8]
          Length = 949

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 279/473 (58%), Gaps = 20/473 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D +W+L  
Sbjct: 455 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDREWTLFS 514

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YEA       K  +++PA++LW  +L    ETG P++ +
Sbjct: 515 PSDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITF 574

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  +I   D   + T+L
Sbjct: 575 KDPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIK--DGELDVTRL 632

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V +ARNSN++HRP+G+G+ G  D   Q+ LP+   E+  
Sbjct: 633 ERTVNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVE 692

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------------T 373
                 E + Y AL AS  +A   G Y TYEGS  SQGIL  D  G+             
Sbjct: 693 FADVAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLN 752

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DW  ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF
Sbjct: 753 TNSRLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEF 812

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN  L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ 
Sbjct: 813 TVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEA 872

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           AA R  ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 873 AARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 924



 Score =  140 bits (354), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF VVN 
Sbjct: 758 DWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 817

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ AA R 
Sbjct: 818 SLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAARRQ 877

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
            ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 878 KWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 924



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D +W+L  
Sbjct: 455 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDREWTLFS 514

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G  F + Y+ YEA
Sbjct: 515 PSDVPDLHDLYGNAFRERYQHYEA 538



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+ LP+   E+        E + Y AL AS  +A   G Y TYEGS  S
Sbjct: 669 LGLMGFQDALYQLGLPYSSPEAVEFADVAMEQLSYFALRASATLAGERGAYDTYEGSLWS 728

Query: 653 QGILQYDMWGV 663
           QGIL  D  G+
Sbjct: 729 QGILPMDSVGL 739


>gi|187479452|ref|YP_787477.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           avium 197N]
 gi|115424039|emb|CAJ50592.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella avium
           197N]
          Length = 970

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 207/527 (39%), Positives = 295/527 (55%), Gaps = 22/527 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  +  W+L  
Sbjct: 445 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G  F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 505 PSDCPDLHDKYGRAFEQAYLGYEAKAASGELKLFKKMPAISLWRKMLSMLFETGHPWITF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTYNFT- 263
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ P A+  Y    
Sbjct: 565 KDPCNIRSPQQHIGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPSANGGYELDH 624

Query: 264 -KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y VE+ARNSN+RHRP+G+G+ G  D    MR+P+    
Sbjct: 625 DKIKHTVGIAMRMLDNVIDINYYAVEKARNSNLRHRPVGLGIMGFQDCLHMMRVPYASQA 684

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G Y +YEGS  S+GIL  D              
Sbjct: 685 AIEFADRSMEAVCYQAYWASSTLAEERGRYPSYEGSLWSRGILPQDSIAMLRDERGGNVD 744

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I  HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 745 VDESSSLDWDTLRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 804

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 805 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLV 864

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + AA R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T 
Sbjct: 865 ECAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTMGATSAEKSTG 923

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNK--EDCIGVQ 596
              ++    A   + S   +  + E   AA   R  +   E+C   Q
Sbjct: 924 RGGELNAVSAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEECEACQ 970



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 124/216 (57%), Gaps = 3/216 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I  HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 752 DWDTLRARIKAHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 811

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    +++ AA R 
Sbjct: 812 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPTELRELYATAFEVEPSWLVECAARRQ 871

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T    ++  
Sbjct: 872 KWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTMGATSAEKSTGRGGELNA 930

Query: 963 AMASKDTRSQEEIQADQEQAMAAMICRRDNK--EDC 996
             A   + S   +  + E   AA   R  +   E+C
Sbjct: 931 VSAGNHSASAAPVLPEPEVVGAACTMRPGDPGFEEC 966



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 51/86 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  +  W+L  
Sbjct: 445 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVVENGDWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+ C  L D +G  F+  Y  YEA+ 
Sbjct: 505 PSDCPDLHDKYGRAFEQAYLGYEAKA 530



 Score = 42.0 bits (97), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G Y +YEGS  S
Sbjct: 664 LGIMGFQDCLHMMRVPYASQAAIEFADRSMEAVCYQAYWASSTLAEERGRYPSYEGSLWS 723

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  +   DW  L+     +G++
Sbjct: 724 RGILPQDSIAMLRDERGGNVDVDESSSLDWDTLRARIKAHGMR 766


>gi|423015517|ref|ZP_17006238.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans AXX-A]
 gi|338781416|gb|EGP45806.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans AXX-A]
          Length = 976

 Score =  369 bits (946), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 199/479 (41%), Positives = 282/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F++ Y  YEA     + K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKYGKAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y VE+ARNSN RHRP+G+G+ G  D    MR+P+  + 
Sbjct: 627 DKIKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASHA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +        E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADTSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDALRARINQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDALRARINQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D +G+ F++ Y  YEA
Sbjct: 507 PSDCPDLHDKYGKAFEEAYVGYEA 530



 Score = 43.9 bits (102), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+  + +        E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASHAAVEFADTSMEAVCYHAYWASSLLAEERGRYQSYEGSLWS 725

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  +   DW AL+     +G++
Sbjct: 726 RGILPQDTLKMLRDERGGHVEVDESSTLDWDALRARINQHGMR 768


>gi|422322458|ref|ZP_16403499.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans C54]
 gi|317402621|gb|EFV83181.1| ribonucleoside-diphosphate reductase subunit alpha [Achromobacter
           xylosoxidans C54]
          Length = 976

 Score =  369 bits (946), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 198/479 (41%), Positives = 282/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F++ Y  YEA     + K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKYGKAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+    
Sbjct: 627 EKIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDALRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   WK GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWKRGLKT-TYYLRTLGATSAEKST 924



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D +G+ F++ Y  YEA
Sbjct: 507 PSDCPDLHDKYGKAFEEAYVGYEA 530



 Score = 44.7 bits (104), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSLLAEERGRYQSYEGSLWS 725

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  +   DW AL+     +G++
Sbjct: 726 RGILPQDTLKMLRDERGGHVEVDESSTLDWDALRARIKQHGMR 768


>gi|407803490|ref|ZP_11150325.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax sp.
           W11-5]
 gi|407022582|gb|EKE34334.1| ribonucleotide-diphosphate reductase subunit alpha [Alcanivorax sp.
           W11-5]
          Length = 965

 Score =  368 bits (945), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 207/525 (39%), Positives = 302/525 (57%), Gaps = 27/525 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEEQEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA---EG--KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +GE F+  Y +YEA   +G  K  +++PA  LW  +L    ETG P+  +
Sbjct: 509 PNNVPDLHDLYGEAFEKKYLEYEAMTRDGRLKLFKRIPAVNLWRKMLSMLFETGHPWFTF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI +  +I P +   +  KL
Sbjct: 569 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINMPRHILP-EGGLDLVKL 627

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D     ++ +   E+  
Sbjct: 628 EKNVRTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYMQKIAYTSPEAVE 687

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------------GV 372
              +  E + Y A+ AS E+AA  G Y T+EGS  SQGIL  D                V
Sbjct: 688 FADRSMEAVSYFAINASSELAAERGSYATFEGSLWSQGILPIDSLEILARERGDEKYLNV 747

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
             +   DW  L++ +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 748 DRSQTLDWNKLRDVVRTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 807

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN  L+ DL   GLWD+ M + L   +GS+Q I+ IPQ LK++Y+T +E+  + +++
Sbjct: 808 FTVVNPFLVNDLKARGLWDNVMVNDLKYYDGSVQPIDRIPQDLKEIYRTAFEVEPRWLVE 867

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A+ N  K+   +   W LGLKT  YYLR   A  + + TI+
Sbjct: 868 AASRRQKWIDQAQSLNLYIAQANGKKLDITYKMAWLLGLKT-TYYLRAIGATTSEKSTIN 926

Query: 553 KTKMANAMASKDARSQE-EIQADQEQAMAAMICRRDNKEDCIGVQ 596
             ++ +  A+  A +   E  AD  QA     C  D+  DC   Q
Sbjct: 927 DGRLNSVSAAPVAETASFEQAADVPQA-----CSIDDP-DCEACQ 965



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/202 (40%), Positives = 125/202 (61%), Gaps = 4/202 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++ +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 754 DWNKLRDVVRTQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 813

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+ DL   GLWD+ M + L   +GS+Q I+ IPQ LK++Y+T +E+  + +++ A+ R 
Sbjct: 814 FLVNDLKARGLWDNVMVNDLKYYDGSVQPIDRIPQDLKEIYRTAFEVEPRWLVEAASRRQ 873

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A+ N  K+   +   W LGLKT  YYLR   A  + + TI+  ++ +
Sbjct: 874 KWIDQAQSLNLYIAQANGKKLDITYKMAWLLGLKT-TYYLRAIGATTSEKSTINDGRLNS 932

Query: 963 AMAS--KDTRSQEEIQADQEQA 982
             A+   +T S E+  AD  QA
Sbjct: 933 VSAAPVAETASFEQ-AADVPQA 953



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 449 RKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEEQEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +GE F+  Y +YEA
Sbjct: 509 PNNVPDLHDLYGEAFEKKYLEYEA 532



 Score = 46.6 bits (109), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 40/84 (47%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D     ++ +   E+     +  E + Y A+ AS E+AA  G Y T+EGS  S
Sbjct: 664 LGIMGFQDALYMQKIAYTSPEAVEFADRSMEAVSYFAINASSELAAERGSYATFEGSLWS 723

Query: 653 QGILQYDMWGVTPTDLWDWAALKV 676
           QGIL  D   +   +  D   L V
Sbjct: 724 QGILPIDSLEILARERGDEKYLNV 747


>gi|384565724|ref|ZP_10012828.1| ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent/ribonucleoside-diphosphate
           reductase, alpha subunit [Saccharomonospora glauca K62]
 gi|384521578|gb|EIE98773.1| ribonucleoside-diphosphate reductase,
           adenosylcobalamin-dependent/ribonucleoside-diphosphate
           reductase, alpha subunit [Saccharomonospora glauca K62]
          Length = 816

 Score =  368 bits (945), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 190/481 (39%), Positives = 283/481 (58%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PDEF+RRVE+D +W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEEWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y++YE      E +  R+V A++LW  +L    ETG P++ +
Sbjct: 369 PDEVPDLHDLYGTAFAERYREYEQAADAGEIRVFRRVSAKQLWRRMLTMLFETGHPWITF 428

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  ++       +   L
Sbjct: 429 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLARHV--GKDGLDVEAL 486

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V EA+ SN+RHRP+G+G+ G +D   ++ +P    E+  
Sbjct: 487 RRTVTTAVRMLDNVIDINFYTVPEAKRSNLRHRPVGLGIMGFSDALFELGIPQASEEAVE 546

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A+ AS E+A   G Y ++EGS  S+GIL  D               V 
Sbjct: 547 FADRSMEVLSYHAISASAELAEERGAYPSFEGSLWSRGILPIDSLRLLAEARGEDELDVD 606

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF
Sbjct: 607 TTMTLDWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEF 666

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+ DL   GLWDD M  +L +++G +  I+ +P  LK  Y T +EI  + ++D 
Sbjct: 667 TVVNPHLVADLKRRGLWDDAMVTELKLHDGVLAPIDRVPDDLKARYATAFEIDSRWLIDA 726

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  
Sbjct: 727 ASRRQKWIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRG 785

Query: 554 T 554
           T
Sbjct: 786 T 786



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 116/187 (62%), Gaps = 1/187 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  T   DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ + 
Sbjct: 601 DELDVDTTMTLDWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKS 660

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SGEF VVN HL+ DL   GLWDD M  +L +++G +  I+ +P  LK  Y T +EI  
Sbjct: 661 NMSGEFTVVNPHLVADLKRRGLWDDAMVTELKLHDGVLAPIDRVPDDLKARYATAFEIDS 720

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D A+ R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    
Sbjct: 721 RWLIDAASRRQKWIDQAQSLNLYLAEPSGKALDALYRHAWRRGLKT-TYYLRSRAATQVE 779

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 780 KSTLRGT 786



 Score = 90.5 bits (223), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 54/83 (65%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PDEF+RRVE+D +W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLELRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEEWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y++YE
Sbjct: 369 PDEVPDLHDLYGTAFAERYREYE 391



 Score = 45.4 bits (106), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G +D   ++ +P    E+     +  E + Y A+ AS E+A   G Y ++EGS  S
Sbjct: 523 LGIMGFSDALFELGIPQASEEAVEFADRSMEVLSYHAISASAELAEERGAYPSFEGSLWS 582

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 583 RGILPID 589


>gi|397664228|ref|YP_006505766.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Legionella pneumophila subsp. pneumophila]
 gi|395127639|emb|CCD05838.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Legionella pneumophila subsp. pneumophila]
          Length = 942

 Score =  368 bits (945), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 283/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    + A KLW  +L    ETG P++ +
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 560 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDEQKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 618 KRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 678 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 737

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 738 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A
Sbjct: 798 VVNPYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAA 857

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 858 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 913



 Score =  143 bits (361), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 742 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A+ R 
Sbjct: 802 YLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 862 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 919

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 920 AVKLIDT 926



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKA 525



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 654 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 713

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 714 KGILPID 720


>gi|171057073|ref|YP_001789422.1| ribonucleotide-diphosphate reductase subunit alpha [Leptothrix
           cholodnii SP-6]
 gi|170774518|gb|ACB32657.1| ribonucleoside-diphosphate reductase, alpha subunit [Leptothrix
           cholodnii SP-6]
          Length = 958

 Score =  368 bits (945), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 212/517 (41%), Positives = 295/517 (57%), Gaps = 24/517 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P  C  L D +G  F+  Y  YEA     E  F ++V A  LW  IL    ETG P++ +
Sbjct: 500 PANCPDLHDLFGTAFEAAYTAYEARADRGEITFFKRVRAVDLWRKILSMLFETGHPWITF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++   D   +  KL
Sbjct: 560 KDACNVRSPQQHVGVVHSSNLCTEITLNTNAGEIAVCNLGSVNLAQHVK--DGEVDQAKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
                   + L+ +ID+N+Y V++AR+SN+RHRP+G+G+ G  D   Q+R+P+  NE+  
Sbjct: 618 CRTVTTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGIMGFQDALYQLRVPYASNEAVE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------------T 373
              +  E + Y A  AS E+AA  G Y TY GS   +GIL  D   +            T
Sbjct: 678 FADRSMEAVCYHAYWASTELAAERGRYATYRGSLWDRGILPIDSIALLAEQRGGYLDVDT 737

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T L DW AL+ +IA++G+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGEF
Sbjct: 738 RTTL-DWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEF 796

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+RDL  LGLWDD M   L   +GS++ I+ +P++LK LY T +E+  + +++ 
Sbjct: 797 TVVNEYLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWLVEA 856

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AA R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T+  
Sbjct: 857 AARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKT-TYYLRTMGATHAEKSTVKA 915

Query: 554 TKMANAMASKDARSQEEIQA--DQEQAMAAMICRRDN 588
             M NA+++    S  E  A    E A     C  D+
Sbjct: 916 GSM-NAVSNGAHGSASEPAAVSSNEPATDVKFCAIDD 951



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/212 (41%), Positives = 127/212 (59%), Gaps = 4/212 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +IA++G+RNS  +A  PTA+ + I+G + S EP   N+  +  LSGEF VVN 
Sbjct: 742 DWDALRARIAQYGMRNSNCVAIAPTATISNIIGVDASIEPCFGNLSVKSNLSGEFTVVNE 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL  LGLWDD M   L   +GS++ I+ +P++LK LY T +E+  + +++ AA R 
Sbjct: 802 YLVRDLKALGLWDDVMVMDLKHFDGSLRRIDRVPEELKRLYATAFEVETQWLVEAAARRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T+    M N
Sbjct: 862 KWIDQAQSLNIYMAGASGKKLDETYKLAWLRGLKT-TYYLRTMGATHAEKSTVKAGSM-N 919

Query: 963 AMASKDTRSQEEIQA--DQEQAMAAMICRRDN 992
           A+++    S  E  A    E A     C  D+
Sbjct: 920 AVSNGAHGSASEPAAVSSNEPATDVKFCAIDD 951



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 48/86 (55%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEGGDWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C  L D +G  F+  Y  YEA  
Sbjct: 500 PANCPDLHDLFGTAFEAAYTAYEARA 525



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 13/104 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+R+P+  NE+     +  E + Y A  AS E+AA  G Y TY GS   
Sbjct: 654 LGIMGFQDALYQLRVPYASNEAVEFADRSMEAVCYHAYWASTELAAERGRYATYRGSLWD 713

Query: 653 QGILQYDMWGV------------TPTDLWDWAALKVLALVYGLK 684
           +GIL  D   +            T T L DW AL+     YG++
Sbjct: 714 RGILPIDSIALLAEQRGGYLDVDTRTTL-DWDALRARIAQYGMR 756



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           V  + LW  IL    ETG P++ +KDACN +S QQ++ V+ 
Sbjct: 536 VRAVDLWRKILSMLFETGHPWITFKDACNVRSPQQHVGVVH 576


>gi|429215136|ref|ZP_19206298.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas sp.
           M1]
 gi|428154363|gb|EKX00914.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas sp.
           M1]
          Length = 959

 Score =  368 bits (945), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 211/523 (40%), Positives = 301/523 (57%), Gaps = 26/523 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y+ YEA     + K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEALTQYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--VDGKLDVEKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +A NSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 GRTVKTAVRMLDNVIDINYYSVPQAENSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAID 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              +  E I Y A++ASC++A   G Y+T++GS  SQGIL  D               V 
Sbjct: 684 FADKSMEAISYFAIQASCDLAEERGAYETFDGSLWSQGILPIDSQKLLIEARGAKYIEVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 QSESLDWAPVRERVRK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            K+ NA++S      E +QA    A     C  DN  DC   Q
Sbjct: 922 GKL-NAVSSV---IDEGLQAAPAPAPVPKACSIDNP-DCEACQ 959



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 132/221 (59%), Gaps = 7/221 (3%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  ++  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSG
Sbjct: 742 VDQSESLDWAPVRERVRK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG 800

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++
Sbjct: 801 EFTVINPYLVRDLKARGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIV 860

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           D A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI
Sbjct: 861 DAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTI 919

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
           +  K+ NA++S      E +QA    A     C  DN  DC
Sbjct: 920 NTGKL-NAVSSV---IDEGLQAAPAPAPVPKACSIDNP-DC 955



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGTWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G+ F++ Y+ YEA
Sbjct: 506 PSDVPDLHDLYGKAFEERYEYYEA 529



 Score = 45.1 bits (105), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIAYGSDAAIDFADKSMEAISYFAIQASCDLAEERGAYETFDGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPID 726



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  LK+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTQYGKLKLHKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|330504345|ref|YP_004381214.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
 gi|328918631|gb|AEB59462.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina NK-01]
          Length = 968

 Score =  368 bits (945), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 199/491 (40%), Positives = 289/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--VDGKLDIEKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V++ARNSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 GRTVKTAVRMLDNVIDINYYSVDQARNSNLKHRPVGLGLMGFQDALYLQHIAYGSDAAIE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E I Y A++ASC++A   G Y T+EGS  S+GIL  D               V 
Sbjct: 684 FADKSMEAISYYAIQASCDLADERGSYSTFEGSLWSKGILPLDSQQLLIEARGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 744 LSESLDWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMASKD 564
            K+    A  D
Sbjct: 922 GKLNAVSAGGD 932



 Score =  149 bits (377), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+  
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKLNA 926

Query: 963 AMASKD 968
             A  D
Sbjct: 927 VSAGGD 932



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 43.1 bits (100), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y T+EGS  S
Sbjct: 660 LGLMGFQDALYLQHIAYGSDAAIEFADKSMEAISYYAIQASCDLADERGSYSTFEGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 40.4 bits (93), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|54297687|ref|YP_124056.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Paris]
 gi|53751472|emb|CAH12890.1| hypothetical protein lpp1738 [Legionella pneumophila str. Paris]
          Length = 942

 Score =  368 bits (944), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/477 (41%), Positives = 283/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    + A KLW  +L    ETG P++ +
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL S+ L  +I   +   +  KL
Sbjct: 560 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSVNLPAHIK--NGKLDEQKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 618 KRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 678 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 737

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 738 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A
Sbjct: 798 VVNPYLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAA 857

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 858 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 913



 Score =  143 bits (361), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 742 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP++LK  Y T +EI    +++ A+ R 
Sbjct: 802 YLVADLKTLNLWDEVMVNDLKYFNGSVQPISRIPEELKRRYATSFEIDPMWLVEAASRRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 862 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 919

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 920 AVKLIDT 926



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKA 525



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 654 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 713

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 714 KGILPID 720


>gi|91787005|ref|YP_547957.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas sp.
           JS666]
 gi|91696230|gb|ABE43059.1| Ribonucleoside-diphosphate reductase [Polaromonas sp. JS666]
          Length = 969

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/491 (40%), Positives = 284/491 (57%), Gaps = 19/491 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFS 500

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKL-----WFAILDSQIETGTPYMLY 205
           P+    L D +G++F+ +Y  YEA  +     PARKL     W  +L    ETG P++ +
Sbjct: 501 PSDTPDLHDKFGKEFEKIYTAYEARAERGEIKPARKLQATDMWRKMLSMLFETGHPWITF 560

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS  E AVCNL S+ L  ++   D   +  KL
Sbjct: 561 KDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLK--DGAIDHDKL 618

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V++AR+SNMRHRP+G+G+ G  D   ++R+P+   E+  
Sbjct: 619 KKTITTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVE 678

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E + Y A  AS E+A   G Y +Y+GS   +GIL  D              V  
Sbjct: 679 FADKSMEAVCYHAYWASTELAKERGKYASYKGSLWDKGILPLDTLDMLAEERGGYVEVDR 738

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL++KIA+ G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF 
Sbjct: 739 SATLDWDALRQKIAQDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFT 798

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V+NH+L+RDL  LGLWDD M   L   +GS++ ++ +PQ++K LY T +E+    +++ A
Sbjct: 799 VINHYLVRDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEIKALYATAFEVETSWIVEAA 858

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T+   
Sbjct: 859 ARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMGATHAEKSTVKAG 917

Query: 555 KMANAMASKDA 565
           KM +  +  +A
Sbjct: 918 KMNSVSSGPEA 928



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL++KIA+ G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF V+NH
Sbjct: 743 DWDALRQKIAQDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINH 802

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL  LGLWDD M   L   +GS++ ++ +PQ++K LY T +E+    +++ AA R 
Sbjct: 803 YLVRDLKRLGLWDDVMVVDLKHFDGSLRPVDRVPQEIKALYATAFEVETSWIVEAAARRQ 862

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T+   KM N
Sbjct: 863 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMGATHAEKSTVKAGKM-N 920

Query: 963 AMAS 966
           +++S
Sbjct: 921 SVSS 924



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGTWTLFS 500

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G++F+ +Y  YEA
Sbjct: 501 PSDTPDLHDKFGKEFEKIYTAYEA 524



 Score = 44.3 bits (103), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++R+P+   E+     +  E + Y A  AS E+A   G Y +Y+GS   
Sbjct: 655 LGIMGFQDCLYELRVPYASQEAVEFADKSMEAVCYHAYWASTELAKERGKYASYKGSLWD 714

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 715 KGILPLD 721


>gi|410421826|ref|YP_006902275.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica MO149]
 gi|427819864|ref|ZP_18986927.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica D445]
 gi|427825137|ref|ZP_18992199.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica Bbr77]
 gi|408449121|emb|CCJ60808.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica MO149]
 gi|410570864|emb|CCN19065.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica D445]
 gi|410590402|emb|CCN05489.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica Bbr77]
          Length = 975

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 293/502 (58%), Gaps = 21/502 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTYNFT- 263
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++ P A+  Y    
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELDH 625

Query: 264 -KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    +  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+   +
Sbjct: 626 DKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQD 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G YQ+YEGS  S+GIL  D              
Sbjct: 686 AIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVD 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T 
Sbjct: 866 ECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTG 924

Query: 552 DKTKMANAMASKDARSQEEIQA 573
              ++ NA+++ D  +   + A
Sbjct: 925 RGGEL-NAVSAGDHGAGSAVSA 945



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 753 DWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 812

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    +++ A+ R 
Sbjct: 813 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQ 872

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T    ++ N
Sbjct: 873 KWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTGRGGEL-N 930

Query: 963 AMASKDTRSQEEIQA 977
           A+++ D  +   + A
Sbjct: 931 AVSAGDHGAGSAVSA 945



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G+ F+  Y  YEA+
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAK 530



 Score = 46.2 bits (108), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+   ++     +  E + Y A  AS E+A   G YQ+YEGS  S
Sbjct: 665 MGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWS 724

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 725 RGILPQD 731


>gi|33598410|ref|NP_886053.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           parapertussis 12822]
 gi|33603350|ref|NP_890910.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica RB50]
 gi|410474442|ref|YP_006897723.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
           parapertussis Bpp5]
 gi|427816360|ref|ZP_18983424.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica 1289]
 gi|33574539|emb|CAE39186.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           parapertussis]
 gi|33577474|emb|CAE34739.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica RB50]
 gi|408444552|emb|CCJ51310.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           parapertussis Bpp5]
 gi|410567360|emb|CCN24931.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica 1289]
          Length = 975

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 293/502 (58%), Gaps = 21/502 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTYNFT- 263
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++ P A+  Y    
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDH 625

Query: 264 -KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    +  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+   +
Sbjct: 626 DKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQD 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G YQ+YEGS  S+GIL  D              
Sbjct: 686 AIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVD 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T 
Sbjct: 866 ECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTG 924

Query: 552 DKTKMANAMASKDARSQEEIQA 573
              ++ NA+++ D  +   + A
Sbjct: 925 RGGEL-NAVSAGDHGAGSAVSA 945



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 753 DWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 812

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    +++ A+ R 
Sbjct: 813 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQ 872

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T    ++ N
Sbjct: 873 KWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTGRGGEL-N 930

Query: 963 AMASKDTRSQEEIQA 977
           A+++ D  +   + A
Sbjct: 931 AVSAGDHGAGSAVSA 945



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G+ F+  Y  YEA+
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAK 530



 Score = 46.2 bits (108), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+   ++     +  E + Y A  AS E+A   G YQ+YEGS  S
Sbjct: 665 MGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWS 724

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 725 RGILPQD 731


>gi|409431275|ref|ZP_11262649.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           HYS]
          Length = 962

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 291/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   + TKL
Sbjct: 567 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTTKL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 625 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 685 FADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 744

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 745 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 803

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 804 TVINPYLVRDLKARGLWDPVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 863

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 864 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 922

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 923 GKL-NAVSS 930



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDPVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMAS 966
           A++S
Sbjct: 927 AVSS 930



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 47.0 bits (110), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727



 Score = 41.6 bits (96), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 531 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 583


>gi|52842001|ref|YP_095800.1| ribonucleotide-diphosphate reductase subunit alpha [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|296107365|ref|YP_003619065.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila 2300/99 Alcoy]
 gi|378777635|ref|YP_005186073.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila subsp. pneumophila ATCC 43290]
 gi|52629112|gb|AAU27853.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|295649266|gb|ADG25113.1| ribonucleoside-diphosphate reductase alpha chain [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307610474|emb|CBX00046.1| hypothetical protein LPW_18011 [Legionella pneumophila 130b]
 gi|364508450|gb|AEW51974.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila subsp. pneumophila ATCC 43290]
          Length = 942

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 282/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    + A KLW  +L    ETG P++ +
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 560 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDEQKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 618 KRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 678 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 737

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 738 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A
Sbjct: 798 VVNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAA 857

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 858 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 913



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 742 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A+ R 
Sbjct: 802 YLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 862 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 919

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 920 AVKLIDT 926



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKA 525



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 654 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 713

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 714 KGILPID 720


>gi|406940863|gb|EKD73510.1| hypothetical protein ACD_45C00296G0010 [uncultured bacterium]
          Length = 945

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/483 (40%), Positives = 286/483 (59%), Gaps = 20/483 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 442 RKGAVCGYLETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLDEGEWTLFS 501

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +GE F+  Y  YEA     E K  +++PA  LW  +L    ETG P+M +
Sbjct: 502 PDDVPDLHDLYGEAFEKTYTAYEAKAARGEIKNFKKLPAMTLWRKMLGMLFETGHPWMTF 561

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ++G +  SNLCTEI   TS DE+AVCNL SI L  ++   DK  +  KL
Sbjct: 562 KDACNLRSPQQHVGVVHSSNLCTEITLNTSLDEIAVCNLGSINLTTHMT--DKGLDQEKL 619

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSNM+HRPIG+G+    D   ++ +P+  +E+  
Sbjct: 620 RRTIHTAIRMLDNVIDINYYSVPQARNSNMKHRPIGLGIMAFQDALYKLGIPYAADEAVE 679

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD------------MWGVT 373
              +  E I Y A+EAS  +A   G Y T++ S  SQGIL  D            ++   
Sbjct: 680 FADRSMELISYYAIEASTFLAEERGQYSTFDESLWSQGILPIDSVELLAKQRAGYLFNQN 739

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW  L++++ K G+RNS ++A  PTA+ A I G ++S EP   N++ +  LSGEF
Sbjct: 740 RSQTLDWETLRKRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEF 799

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+ DL +L LWDD M + L   +GS+  I  IP  LK LY T +E+    +++ 
Sbjct: 800 TVINPYLVTDLKKLSLWDDVMINDLKYYHGSVTKISRIPDHLKQLYATAFEMDPAWLVEA 859

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+YMA+ +  K+ +++   W LGLKT  YYLR+  A NA + T+  
Sbjct: 860 ASRRQKWIDQAQSLNLYMAQPSGKKLDNLYRLAWVLGLKT-TYYLRSMGATNAERSTVQD 918

Query: 554 TKM 556
           + +
Sbjct: 919 SAL 921



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++++ K G+RNS ++A  PTA+ A I G ++S EP   N++ +  LSGEF V+N 
Sbjct: 745 DWETLRKRVKKVGMRNSNVLAIAPTATIANITGVSQSIEPTYQNLFVKSNLSGEFTVINP 804

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL +L LWDD M + L   +GS+  I  IP  LK LY T +E+    +++ A+ R 
Sbjct: 805 YLVTDLKKLSLWDDVMINDLKYYHGSVTKISRIPDHLKQLYATAFEMDPAWLVEAASRRQ 864

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLN+YMA+ +  K+ +++   W LGLKT  YYLR+  A NA + T+  + +
Sbjct: 865 KWIDQAQSLNLYMAQPSGKKLDNLYRLAWVLGLKT-TYYLRSMGATNAERSTVQDSAL 921



 Score = 90.1 bits (222), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 52/86 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 442 RKGAVCGYLETWHKDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVLDEGEWTLFS 501

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +GE F+  Y  YEA+ 
Sbjct: 502 PDDVPDLHDLYGEAFEKTYTAYEAKA 527



 Score = 41.2 bits (95), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+    D   ++ +P+  +E+     +  E I Y A+EAS  +A   G Y T++ S  S
Sbjct: 656 LGIMAFQDALYKLGIPYAADEAVEFADRSMELISYYAIEASTFLAEERGQYSTFDESLWS 715

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 716 QGILPID 722



 Score = 41.2 bits (95), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 682 GLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
            + LW  +L    ETG P+M +KDACN +S QQ++ V+ 
Sbjct: 540 AMTLWRKMLGMLFETGHPWMTFKDACNLRSPQQHVGVVH 578


>gi|77460467|ref|YP_349974.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens Pf0-1]
 gi|77384470|gb|ABA75983.1| ribonucleoside-diphosphate reductase alpha chain [Pseudomonas
           fluorescens Pf0-1]
          Length = 964

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 292/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN RHRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+G+L  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIEARGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
             T+  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLTESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/197 (41%), Positives = 123/197 (62%), Gaps = 3/197 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T+  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 746 TESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 804

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A
Sbjct: 805 VINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAA 864

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 865 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTG 923

Query: 959 KMANAMASKDTRSQEEI 975
           K+ NA++S      + +
Sbjct: 924 KL-NAVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.2 bits (108), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWS 720

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 721 KGVLPLD 727


>gi|148359318|ref|YP_001250525.1| ribonucleoside-diphosphate reductase subunit alpha [Legionella
           pneumophila str. Corby]
 gi|148281091|gb|ABQ55179.1| ribonucleoside-diphosphate reductase, alpha subunit [Legionella
           pneumophila str. Corby]
          Length = 917

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 199/477 (41%), Positives = 282/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 415 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 474

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    + A KLW  +L    ETG P++ +
Sbjct: 475 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTF 534

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 535 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDEQKL 592

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRPIG+G+ G  D   ++++ +   E+  
Sbjct: 593 KRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPIGLGIMGFQDALYELKMDYASKEAIE 652

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 653 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 712

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 713 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 772

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A
Sbjct: 773 VVNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAA 832

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 833 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 888



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 717 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 776

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A+ R 
Sbjct: 777 YLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQ 836

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 837 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 894

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 895 AVKLIDT 901



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 415 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 474

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 475 PDEVPDLHDQYGKAFEALYVEYEEKA 500



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 629 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 688

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 689 KGILPID 695


>gi|412341327|ref|YP_006970082.1| ribonucleoside-diphosphate reductase subunit alpha [Bordetella
           bronchiseptica 253]
 gi|408771161|emb|CCJ55960.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           bronchiseptica 253]
          Length = 975

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/502 (40%), Positives = 293/502 (58%), Gaps = 21/502 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YEA     E K  ++ PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKTPAVSLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTY--NF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++ P A+  Y  + 
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPSANGGYELDH 625

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    +  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+   +
Sbjct: 626 DKLKRTIGVAMRMLDNVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQD 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G YQ+YEGS  S+GIL  D              
Sbjct: 686 AIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWSRGILPQDTLAMLREERGGNVD 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T 
Sbjct: 866 ECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTG 924

Query: 552 DKTKMANAMASKDARSQEEIQA 573
              ++ NA+++ D  +   + A
Sbjct: 925 RGGEL-NAVSAGDHGAGSAVSA 945



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 2/195 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 753 DWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 812

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L+ LY T +E+    +++ A+ R 
Sbjct: 813 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQ 872

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYM+  +  K+   +   W+ GLKT  YYLRT  A +A + T    ++ N
Sbjct: 873 KWIDQAQSLNIYMSGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKSTGRGGEL-N 930

Query: 963 AMASKDTRSQEEIQA 977
           A+++ D  +   + A
Sbjct: 931 AVSAGDHGAGSAVSA 945



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G+ F+  Y  YEA+
Sbjct: 506 PSDCPDLHDKYGKAFEQAYAGYEAK 530



 Score = 46.2 bits (108), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+   ++     +  E + Y A  AS E+A   G YQ+YEGS  S
Sbjct: 665 MGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEGSLWS 724

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 725 RGILPQD 731


>gi|300784784|ref|YP_003765075.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
           mediterranei U32]
 gi|384148056|ref|YP_005530872.1| ribonucleoside-diphosphate reductase subunit alpha [Amycolatopsis
           mediterranei S699]
 gi|399536669|ref|YP_006549331.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei S699]
 gi|299794298|gb|ADJ44673.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei U32]
 gi|340526210|gb|AEK41415.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei S699]
 gi|398317439|gb|AFO76386.1| ribonucleoside-diphosphate reductase alpha chain [Amycolatopsis
           mediterranei S699]
          Length = 972

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 193/481 (40%), Positives = 283/481 (58%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 429 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 488

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G +F   Y++YEA     E K  R+  A  LW  +L    ETG P++ +
Sbjct: 489 PNETPDLHDLYGNEFATRYREYEAAADRGEIKVFRRARAVDLWRRMLTMLFETGHPWITF 548

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+ +EVAVCNL S+ L  ++ P  +  +  +L
Sbjct: 549 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNSEEVAVCNLGSVNLLKHVTP--EGLDTKRL 606

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+NFY + EAR SN+RHRP+G+G+ G  D   ++ +PF   E+  
Sbjct: 607 EKTVRTAVRMLDNVIDINFYTIPEARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVK 666

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL------------QYDMWGVT 373
                 E + Y A+ AS ++A   G YQ++EGS  S+GIL            Q D   V 
Sbjct: 667 FADVSMEHLSYYAISASTDLAEERGQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVD 726

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N++ +  +SG+F
Sbjct: 727 TSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKSNMSGDF 786

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+R L   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  K ++D 
Sbjct: 787 TVVNPHLVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIESKWIVDA 846

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  + T+  
Sbjct: 847 GSVRQKWIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKT-TYYLRAQSATHVEKSTLRG 905

Query: 554 T 554
           T
Sbjct: 906 T 906



 Score =  135 bits (341), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/187 (39%), Positives = 111/187 (59%), Gaps = 1/187 (0%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DWA L+E++   G+RNS ++A  PTA+ + I G  +S EP   N++ + 
Sbjct: 721 DGLDVDTSSTLDWAPLRERVKTVGMRNSNVMAIAPTATISNISGVGQSIEPLFQNLFVKS 780

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            +SG+F VVN HL+R L   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI  
Sbjct: 781 NMSGDFTVVNPHLVRSLKARGLWDEVMVSDLKYFDGSLGQIDRVPDDLKALYATAFEIES 840

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           K ++D  + R  +IDQ+QSLN+Y+A  +  K+  ++ + W  GLKT  YYLR + A +  
Sbjct: 841 KWIVDAGSVRQKWIDQAQSLNLYIAAPSGRKLDQLYRYAWHKGLKT-TYYLRAQSATHVE 899

Query: 952 QFTIDKT 958
           + T+  T
Sbjct: 900 KSTLRGT 906



 Score = 96.7 bits (239), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 56/84 (66%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+DAQW+L  
Sbjct: 429 RKGAACAYLETWHVDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADAQWTLFS 488

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G +F   Y++YEA
Sbjct: 489 PNETPDLHDLYGNEFATRYREYEA 512



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +G+ G  D   ++ +PF   E+        E + Y A+ AS ++A   
Sbjct: 631 ARRSNLRHRPVGLGIMGFQDALFEIGVPFASEEAVKFADVSMEHLSYYAISASTDLAEER 690

Query: 641 GPYQTYEGSPVSQGIL------------QYDMWGVTPTDLWDWAALKVLALVYGLK 684
           G YQ++EGS  S+GIL            Q D   V  +   DWA L+      G++
Sbjct: 691 GQYQSFEGSLWSKGILPIDSLQLLIDARQGDGLDVDTSSTLDWAPLRERVKTVGMR 746


>gi|399576281|ref|ZP_10770038.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogranum
           salarium B-1]
 gi|399238992|gb|EJN59919.1| ribonucleoside-diphosphate reductase, alpha subunit [Halogranum
           salarium B-1]
          Length = 808

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/496 (38%), Positives = 288/496 (58%), Gaps = 17/496 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A YLE WH D  DF++L++NTG E  R  D+    WIPD FM+RVE+D  W+L  
Sbjct: 292 RRGAAAAYLECWHLDYPDFVDLRRNTGDERRRTHDMNTAAWIPDLFMKRVEADEAWTLFS 351

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE--AEGKFIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L  ++GE+F++LY++YE  AE   +RQ   V A  LW   L    ETG P++ +
Sbjct: 352 PDEVPDLHSTYGEEFEELYREYEQKAEAGELRQHRTVDAADLWRKTLTRLFETGHPWITF 411

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD  N +S Q + G +  SNLCTEI   TS +E AVCNL S+ L  ++      +   +L
Sbjct: 412 KDPSNVRSPQDHAGVVNSSNLCTEITLNTSDEETAVCNLGSVNLAKHVESDGDGFQRERL 471

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            D  +   + L+ ++D+NFYP E A  SNMRHRPIG+GV G  +  ++ R+P   +E+  
Sbjct: 472 ADTVETAMRMLDNVVDLNFYPTENAERSNMRHRPIGLGVMGFHEALLKQRVPMASDEALT 531

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV--------TPTD- 376
           +  +I E + Y A+  S  +AA  G Y++Y+GS   +G+L  D   +         P D 
Sbjct: 532 VASEIQELVAYHAILNSSRLAAERGSYESYDGSKWDRGLLPQDTLDLLEAERGREIPVDS 591

Query: 377 --LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
               DW A++E +A HG+RNS  +A  PTA+ + I+G   S EP  SN+Y +  +SG+F 
Sbjct: 592 EERLDWDAVREHVAAHGMRNSNTMAVAPTATISTIVGTTPSIEPIYSNLYVKSNMSGDFT 651

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+ DL   GLW    +D++  ++GSIQ ++ IP  +++L++  +EI  +  L + 
Sbjct: 652 VVNDHLVTDLKREGLWSAETRDRIKYHDGSIQQLDEIPDDVQELHRGAFEIDPRHQLRLT 711

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A RG +IDQSQS N++    + + +  ++   WKLGLKT  YYLRT  A+   + T+D  
Sbjct: 712 AQRGVWIDQSQSHNVFFPSTDGSLLDDVYKTAWKLGLKT-TYYLRTLGASQIEKSTLDMR 770

Query: 555 KMANAMASKDARSQEE 570
           + ++     D+   +E
Sbjct: 771 EYSDTQTRGDSGVTDE 786



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 143/268 (53%), Gaps = 28/268 (10%)

Query: 733 RTPMISDKHY-------EIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWD-- 783
           R PM SD+         E++  +A   +S +  +R    ++ G K+D  G+ P D  D  
Sbjct: 521 RVPMASDEALTVASEIQELVAYHAILNSSRLAAERGSYESYDGSKWDR-GLLPQDTLDLL 579

Query: 784 -----------------WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
                            W A++E +A HG+RNS  +A  PTA+ + I+G   S EP  SN
Sbjct: 580 EAERGREIPVDSEERLDWDAVREHVAAHGMRNSNTMAVAPTATISTIVGTTPSIEPIYSN 639

Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
           +Y +  +SG+F VVN HL+ DL   GLW    +D++  ++GSIQ ++ IP  +++L++  
Sbjct: 640 LYVKSNMSGDFTVVNDHLVTDLKREGLWSAETRDRIKYHDGSIQQLDEIPDDVQELHRGA 699

Query: 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 946
           +EI  +  L + A RG +IDQSQS N++    + + +  ++   WKLGLKT  YYLRT  
Sbjct: 700 FEIDPRHQLRLTAQRGVWIDQSQSHNVFFPSTDGSLLDDVYKTAWKLGLKT-TYYLRTLG 758

Query: 947 AANAIQFTIDKTKMANAMASKDTRSQEE 974
           A+   + T+D  + ++     D+   +E
Sbjct: 759 ASQIEKSTLDMREYSDTQTRGDSGVTDE 786



 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A YLE WH D  DF++L++NTG E  R  D+    WIPD FM+RVE+D  W+L  
Sbjct: 292 RRGAAAAYLECWHLDYPDFVDLRRNTGDERRRTHDMNTAAWIPDLFMKRVEADEAWTLFS 351

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L  ++GE+F++LY++YE
Sbjct: 352 PDEVPDLHSTYGEEFEELYREYE 374



 Score = 47.8 bits (112), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  +  ++ R+P   +E+  +  +I E + Y A+  S  +AA  G Y++Y+GS   
Sbjct: 508 LGVMGFHEALLKQRVPMASDEALTVASEIQELVAYHAILNSSRLAAERGSYESYDGSKWD 567

Query: 653 QGILQYDMWGV--------TPTD---LWDWAALKVLALVYGLK 684
           +G+L  D   +         P D     DW A++     +G++
Sbjct: 568 RGLLPQDTLDLLEAERGREIPVDSEERLDWDAVREHVAAHGMR 610


>gi|92119122|ref|YP_578851.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           hamburgensis X14]
 gi|91802016|gb|ABE64391.1| Ribonucleoside-diphosphate reductase [Nitrobacter hamburgensis X14]
          Length = 966

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 280/480 (58%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D  W+L  
Sbjct: 447 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGVWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D  G+ F + Y  YE      E +  +QV A  LW  +L    ETG P++ +
Sbjct: 507 PNETPDLHDLTGKAFAERYAHYEGKAARGEMRVTKQVRAVDLWRRMLTMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS  EVAVCNL S+ L  +++  D   +   L
Sbjct: 567 KDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVNHLH--DGKLDHAHL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +++VNFY + EAR SN+RHRP+G+G+ G  D    +RLP+ C+E+  
Sbjct: 625 ARTVKTAMRMLDNVLNVNFYTIPEARTSNLRHRPVGLGLMGFQDALNILRLPYACDEAVS 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT------PTDL-- 377
              +  E I Y A+  S ++AA  G Y +Y+GS  S+GIL  D   +       P DL  
Sbjct: 685 FADESMEAISYWAISGSVDLAAERGRYPSYQGSLWSKGILPLDSLALVDEARGAPIDLDR 744

Query: 378 ---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
               DW AL++++   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  +SG+F 
Sbjct: 745 SSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFT 804

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+RDL   GLWD+ M   L   +G +  I+ +P  LK LY T +EI    ++D A
Sbjct: 805 VVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRIDRVPDDLKALYATAFEIDSAWLIDAA 864

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y+A+ +  K+ +++ H WK GLKT  YYLR++ A +  + T+  T
Sbjct: 865 ARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEKSTLKVT 923



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/186 (41%), Positives = 115/186 (61%), Gaps = 6/186 (3%)

Query: 778 PTDL-----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 832
           P DL      DW AL++++   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  
Sbjct: 739 PIDLDRSSRLDWEALRQRVMTVGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSN 798

Query: 833 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQK 892
           +SG+F VVN HL+RDL   GLWD+ M   L   +G +  I+ +P  LK LY T +EI   
Sbjct: 799 MSGDFTVVNAHLVRDLKARGLWDEVMISDLKYFDGGLSRIDRVPDDLKALYATAFEIDSA 858

Query: 893 TVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
            ++D AA R  +IDQ+QSLN+Y+A+ +  K+ +++ H WK GLKT  YYLR++ A +  +
Sbjct: 859 WLIDAAARRQKWIDQAQSLNLYIADPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEK 917

Query: 953 FTIDKT 958
            T+  T
Sbjct: 918 STLKVT 923



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 50/86 (58%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D  W+L  
Sbjct: 447 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGVWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    L D  G+ F + Y  YE + 
Sbjct: 507 PNETPDLHDLTGKAFAERYAHYEGKA 532



 Score = 56.6 bits (135), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +RLP+ C+E+     +  E I Y A+  S ++AA  G Y +Y+GS  S
Sbjct: 661 LGLMGFQDALNILRLPYACDEAVSFADESMEAISYWAISGSVDLAAERGRYPSYQGSLWS 720

Query: 653 QGILQYDMWGVT------PTDL-----WDWAALKVLALVYGLK 684
           +GIL  D   +       P DL      DW AL+   +  G++
Sbjct: 721 KGILPLDSLALVDEARGAPIDLDRSSRLDWEALRQRVMTVGMR 763


>gi|397667501|ref|YP_006509038.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Legionella pneumophila subsp. pneumophila]
 gi|395130912|emb|CCD09161.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Legionella pneumophila subsp. pneumophila]
          Length = 942

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/477 (41%), Positives = 282/477 (59%), Gaps = 19/477 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK--FIRQ---VPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ LY +YE + +   IR    + A KLW  +L    ETG P++ +
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKARQGIIRNTKTISAVKLWRRMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G I  SNLCTEI   TS++E+AVCNL SI L  +I   +   +  KL
Sbjct: 560 KDPCNLRSPQQHAGVIHSSNLCTEITLNTSEEEIAVCNLGSINLPAHIK--NGKLDEQKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D   ++++ +   E+  
Sbjct: 618 KRTISTAVRMLDNVIDINYYSVPQARNSNLQHRPVGLGIMGFQDALYELKMDYASKEAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E I Y A+EASC++A   G Y TYEGS  S+GIL  D   +             
Sbjct: 678 FADSSMELISYYAIEASCDLAKERGSYSTYEGSLWSKGILPIDSINLLQQSRNKYLEQDR 737

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF 
Sbjct: 738 SQKLDWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A
Sbjct: 798 VVNPYLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAA 857

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + R  +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+
Sbjct: 858 SRRQKWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTV 913



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/187 (43%), Positives = 116/187 (62%), Gaps = 2/187 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ K+   G+RNS ++A  PTA+ + I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 742 DWEPLRVKVRTQGMRNSNVMAIAPTATISNICGVSQSIEPTYQNLYVKSNLSGEFTVVNP 801

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  L LWD+ M + L   NGS+Q I  IP +LK  Y T +EI    +++ A+ R 
Sbjct: 802 YLVADLKALNLWDEVMVNDLKYFNGSVQPISRIPDELKRRYATSFEIDPMWLVEAASRRQ 861

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA+ +  K+  ++ H W  GLKT  YYLR+  A+NA + T+    + N
Sbjct: 862 KWIDQAQSLNIYMAQPSGKKLDQLYMHAWIRGLKT-TYYLRSLGASNAEKSTVTDGAL-N 919

Query: 963 AMASKDT 969
           A+   DT
Sbjct: 920 AVKLIDT 926



 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+   LW+PD FM+RV  D  W+L  
Sbjct: 440 RKGAVCAYLECWHRDVEEFLELRKNTGDDRRRTHDMNTALWVPDLFMKRVREDGNWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ LY +YE + 
Sbjct: 500 PDEVPDLHDQYGKAFEALYVEYEEKA 525



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++++ +   E+        E I Y A+EASC++A   G Y TYEGS  S
Sbjct: 654 LGIMGFQDALYELKMDYASKEAIEFADSSMELISYYAIEASCDLAKERGSYSTYEGSLWS 713

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 714 KGILPID 720


>gi|387816188|ref|YP_005431683.1| ribonucleoside diphosphate reductase subunit alpha [Marinobacter
           hydrocarbonoclasticus ATCC 49840]
 gi|381341213|emb|CCG97260.1| ribonucleoside diphosphate reductase, alpha subunit [Marinobacter
           hydrocarbonoclasticus ATCC 49840]
          Length = 952

 Score =  367 bits (942), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/473 (41%), Positives = 280/473 (59%), Gaps = 20/473 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 458 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFS 517

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YEA       K  +++PA++LW  +L    ETG P++ +
Sbjct: 518 PSDVPDLHDLYGNAFRERYQHYEALAEQGKIKLFKKIPAKQLWRKMLTVLFETGHPWITF 577

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  +I   D   + T+L
Sbjct: 578 KDPCNLRSPQQHQGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHIK--DGELDVTRL 635

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V +ARNSN++HRP+G+G+ G  D   Q+ LP+   E+  
Sbjct: 636 ERTVNTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYQLGLPYSSPEAVE 695

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-----TDL--- 377
                 E + Y AL AS  +A   G Y TYEGS  SQGIL  D  G+        DL   
Sbjct: 696 FADVAMEQLSYFALRASATLAGERGAYDTYEGSLWSQGILPMDSVGLLKDNRRDGDLSLN 755

Query: 378 ----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DW  ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF
Sbjct: 756 THSRLDWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEF 815

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN  L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ 
Sbjct: 816 TVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEA 875

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           AA R  ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 876 AARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 927



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 112/168 (66%), Gaps = 1/168 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF VVN 
Sbjct: 761 DWTPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 820

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ AA R 
Sbjct: 821 SLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPAELKARYATAFEIDPRWLVEAAARRQ 880

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
            ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 881 KWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 927



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 458 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFS 517

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G  F + Y+ YEA
Sbjct: 518 PSDVPDLHDLYGNAFRERYQHYEA 541



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+ LP+   E+        E + Y AL AS  +A   G Y TYEGS  S
Sbjct: 672 LGLMGFQDALYQLGLPYSSPEAVEFADVAMEQLSYFALRASATLAGERGAYDTYEGSLWS 731

Query: 653 QGILQYDMWGV 663
           QGIL  D  G+
Sbjct: 732 QGILPMDSVGL 742


>gi|431804028|ref|YP_007230931.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida HB3267]
 gi|430794793|gb|AGA74988.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida HB3267]
          Length = 959

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-------MWGVTPTDL- 377
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D         G    D+ 
Sbjct: 684 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVN 743

Query: 378 ----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|374370404|ref|ZP_09628408.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           basilensis OR16]
 gi|373098056|gb|EHP39173.1| ribonucleotide-diphosphate reductase subunit alpha [Cupriavidus
           basilensis OR16]
          Length = 980

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/509 (40%), Positives = 290/509 (56%), Gaps = 21/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P TC  L D  G+ F+  Y  YEA     E K  +++PA +LW  +L    ETG P++ +
Sbjct: 507 PATCPDLHDLVGKAFEQAYLGYEAKAARGELKLFKKIPAMQLWRKMLGMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKT--YNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++   AD T   + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHLKQLADGTQVLDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KL+   +   + L+ +ID+N+Y VE+AR+SN+RHRP+G+G+ G  D    +RLP+  + 
Sbjct: 627 AKLEKTVRTAMRMLDNVIDINYYAVEKARSSNLRHRPVGMGIMGFQDCLHLLRLPYASDA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +        E + Y A  AS E+A   G Y TYEGS   +GIL  D              
Sbjct: 687 AVQFADTSMEAVCYYAYRASSELAEERGRYSTYEGSLWDRGILPQDSLKLLAEERGGYLE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDHSSAMDWDSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL E GLWD+ M   L   +G +  I+ IPQ L+D+Y T +E+    ++
Sbjct: 807 EFTVVNEYLVRDLKERGLWDEVMVADLKYFDGKLARIDRIPQDLRDIYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 867 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 925

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMA 580
            +  + NA++S           DQ  A A
Sbjct: 926 SRGSL-NAVSSGSEGGFSAAGIDQAAASA 953



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 121/209 (57%), Gaps = 2/209 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW +L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDHSSAMDWDSLRARIKQHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL E GLWD+ M   L   +G +  I+ IPQ L+D+Y T +E+    ++
Sbjct: 807 EFTVVNEYLVRDLKERGLWDEVMVADLKYFDGKLARIDRIPQDLRDIYATAFEVEPSWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +  + T+
Sbjct: 867 EAASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTMAATHVEKSTV 925

Query: 956 DKTKMANAMASKDTRSQEEIQADQEQAMA 984
            +  + NA++S           DQ  A A
Sbjct: 926 SRGSL-NAVSSGSEGGFSAAGIDQAAASA 953



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 50/86 (58%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEAGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P  C  L D  G+ F+  Y  YEA+ 
Sbjct: 507 PATCPDLHDLVGKAFEQAYLGYEAKA 532



 Score = 44.3 bits (103), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +RLP+  + +        E + Y A  AS E+A   G Y TYEGS   
Sbjct: 666 MGIMGFQDCLHLLRLPYASDAAVQFADTSMEAVCYYAYRASSELAEERGRYSTYEGSLWD 725

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 726 RGILPQD 732



 Score = 40.4 bits (93), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           LK+   +  ++LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 537 LKLFKKIPAMQLWRKMLGMLFETGHPWITFKDPCNIRSPQQHVGVVH 583


>gi|339488928|ref|YP_004703456.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida S16]
 gi|338839771|gb|AEJ14576.1| ribonucleotide-diphosphate reductase, alpha subunit [Pseudomonas
           putida S16]
          Length = 959

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-------MWGVTPTDL- 377
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D         G    D+ 
Sbjct: 684 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVN 743

Query: 378 ----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.1 bits (105), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|163854888|ref|YP_001629186.1| ribonucleotide-diphosphate reductase subunit alpha [Bordetella
           petrii DSM 12804]
 gi|163258616|emb|CAP40915.1| ribonucleoside-diphosphate reductase alpha chain [Bordetella
           petrii]
          Length = 974

 Score =  367 bits (941), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/479 (41%), Positives = 282/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G+ F+  Y  YEA     E K  +++PA  LW  +L    ETG P++ +
Sbjct: 506 PSDCPDLHDKYGKAFEQAYLGYEAKVASGELKLFKKMPAISLWRKMLSMLFETGHPWITF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++ PA       + 
Sbjct: 566 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLVAHMKPAAAGGFELDH 625

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    I  + L+ +ID+N+Y V++A++SN RHRP+G+G+ G  D    MR+P+    
Sbjct: 626 DKLKRTVGIAMRMLDNVIDINYYAVKKAKDSNERHRPVGMGIMGFQDCLQMMRVPYASQA 685

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G Y +YEGS  S+GIL  D              
Sbjct: 686 AVEFADRSMEAVCYHAYWASSELAQERGRYPSYEGSLWSRGILPQDTLAMLRDERGGHVE 745

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDESSTLDWNALRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+  + ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLV 865

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T
Sbjct: 866 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKST 923



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW AL+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 746 VDESSTLDWNALRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 805

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+  + ++
Sbjct: 806 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLV 865

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T
Sbjct: 866 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTLGATSAEKST 923



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV  + +W+L  
Sbjct: 446 RKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMENGEWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G+ F+  Y  YEA+
Sbjct: 506 PSDCPDLHDKYGKAFEQAYLGYEAK 530



 Score = 46.2 bits (108), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS E+A   G Y +YEGS  S
Sbjct: 665 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYWASSELAQERGRYPSYEGSLWS 724

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  +   DW AL+     +G++
Sbjct: 725 RGILPQDTLAMLRDERGGHVEVDESSTLDWNALRARIKEHGMR 767


>gi|421502702|ref|ZP_15949655.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina DLHK]
 gi|400346686|gb|EJO95043.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mendocina DLHK]
          Length = 969

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/491 (40%), Positives = 287/491 (58%), Gaps = 21/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 567 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--VDGKLDIEKL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      + +  + +  
Sbjct: 625 GRTVKTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGLMGFQDALYLQHIAYGSDAAIE 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E I Y A++ASC++A   G Y T+EGS  S+GIL  D               V 
Sbjct: 685 FADRSMEAISYYAIQASCDLAEERGSYSTFEGSLWSKGILPLDSQQILIEARGQKYIDVD 744

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 745 LSESLDWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEF 803

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D 
Sbjct: 804 TVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDA 863

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 864 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 922

Query: 554 TKMANAMASKD 564
            K+    A  D
Sbjct: 923 GKLNAVSAGGD 933



 Score =  149 bits (377), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 117/186 (62%), Gaps = 2/186 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPIRERV-KKGIRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+  
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKLNA 927

Query: 963 AMASKD 968
             A  D
Sbjct: 928 VSAGGD 933



 Score = 86.7 bits (213), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 43.5 bits (101), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E I Y A++ASC++A   G Y T+EGS  S
Sbjct: 661 LGLMGFQDALYLQHIAYGSDAAIEFADRSMEAISYYAIQASCDLAEERGSYSTFEGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727



 Score = 40.4 bits (93), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 531 LIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 583


>gi|170720378|ref|YP_001748066.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida W619]
 gi|169758381|gb|ACA71697.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida W619]
          Length = 959

 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 47.0 bits (110), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|124268398|ref|YP_001022402.1| ribonucleotide-diphosphate reductase subunit alpha [Methylibium
           petroleiphilum PM1]
 gi|124261173|gb|ABM96167.1| Ribonucleoside-diphosphate reductase [Methylibium petroleiphilum
           PM1]
          Length = 971

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 200/490 (40%), Positives = 288/490 (58%), Gaps = 20/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 443 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIEGGDWTLFS 502

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D +G  F+  Y  YE      E K  ++VPA+ LW  +L    ETG P++ +
Sbjct: 503 PSTCPDLHDKFGIAFEQAYTAYEQKADRGELKLYKRVPAKDLWRKMLSMLFETGHPWITF 562

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTY--NFT 263
           KDACN +S QQ++G +  SNLCTEI   T+  E+AVCNL S+ L  ++    +    +  
Sbjct: 563 KDACNVRSPQQHVGVVHSSNLCTEITLNTNGSEIAVCNLGSVNLAQHLMHGAEGLEIDHA 622

Query: 264 KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNES 323
           KL+       + L+ +ID+N+Y V++AR+SN+RHRP+G+GV G  D   Q+R+ +   ++
Sbjct: 623 KLRKTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGVMGFQDSLYQLRIAYASQQA 682

Query: 324 RLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------V 372
                +  E + Y A  AS E+A   G Y +Y+GS   +GIL  D              V
Sbjct: 683 VEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWDRGILPIDSLDLLAEQRGGYVDV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
             +   DW AL+ +I +HG+RNS  +A  PTA+ + I+G + S EP  SN+  +  LSGE
Sbjct: 743 DRSTSLDWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLSVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL +LGLWDD M   L   +GS++ I+ +P++LK LY T +E+    +++
Sbjct: 803 FTVINEYLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFEVEPTWLVE 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            AA R  +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T+ 
Sbjct: 863 AAARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTVGATHAEKSTV- 920

Query: 553 KTKMANAMAS 562
           K    NA++S
Sbjct: 921 KAGHLNAVSS 930



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 120/184 (65%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +I +HG+RNS  +A  PTA+ + I+G + S EP  SN+  +  LSGEF V+N 
Sbjct: 749 DWDALRARIQQHGMRNSNCVAIAPTATISNIIGVDASIEPSFSNLSVKSNLSGEFTVINE 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWDD M   L   +GS++ I+ +P++LK LY T +E+    +++ AA R 
Sbjct: 809 YLVRDLKKLGLWDDVMVMDLKHFDGSLRRIDRVPEELKSLYATAFEVEPTWLVEAAARRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W+ GLKT  YYLRT  A +A + T+ K    N
Sbjct: 869 KWIDQAQSLNIYMAGASGKKLDDTYKLAWQRGLKT-TYYLRTVGATHAEKSTV-KAGHLN 926

Query: 963 AMAS 966
           A++S
Sbjct: 927 AVSS 930



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 48/83 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 443 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVIEGGDWTLFS 502

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L D +G  F+  Y  YE
Sbjct: 503 PSTCPDLHDKFGIAFEQAYTAYE 525



 Score = 41.6 bits (96), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 29/51 (56%)

Query: 670 DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           D   LK+   V    LW  +L    ETG P++ +KDACN +S QQ++ V+ 
Sbjct: 529 DRGELKLYKRVPAKDLWRKMLSMLFETGHPWITFKDACNVRSPQQHVGVVH 579



 Score = 40.0 bits (92), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  D   Q+R+ +   ++     +  E + Y A  AS E+A   G Y +Y+GS   
Sbjct: 661 LGVMGFQDSLYQLRIAYASQQAVEYADRSMEAVCYHAYWASTELAEERGRYSSYKGSLWD 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 RGILPID 727


>gi|398849027|ref|ZP_10605807.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM84]
 gi|398245809|gb|EJN31317.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM84]
          Length = 958

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 565 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 623 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 683 FADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 742

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 743 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 801

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 802 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 861

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 862 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 920

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 921 GKL-NAVSS 928



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 748 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 806

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 807 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 866

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 867 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 924

Query: 963 AMAS 966
           A++S
Sbjct: 925 AVSS 928



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEA 528



 Score = 46.6 bits (109), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 659 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWS 718

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 719 KGILPLD 725



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 529 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 581


>gi|398979216|ref|ZP_10688271.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM25]
 gi|398135879|gb|EJM24981.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM25]
          Length = 964

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 292/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN RHRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LKRTIDVAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+G+L  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGVLPLDSQQILIEARGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.2 bits (108), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWS 720

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 721 KGVLPLD 727


>gi|386288749|ref|ZP_10065889.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
           proteobacterium BDW918]
 gi|385278304|gb|EIF42276.1| ribonucleotide-diphosphate reductase subunit alpha [gamma
           proteobacterium BDW918]
          Length = 965

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 286/490 (58%), Gaps = 21/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLESWHIDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFQDGDWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G+ F++ ++ YE      E K  ++V A  LW  IL    ETG P++ +
Sbjct: 505 PNNVPDLHDLYGKAFEERFEHYEELTRKGEIKLYKRVKAADLWRKILSMLFETGHPWITF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TSKDE+AVCNL S+ L  +I   D   +  K+
Sbjct: 565 KDPCNLRSPQQHVGVVHSSNLCTEITLNTSKDEIAVCNLGSVNLAQHI--GDNGLDLAKV 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K   + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D   +  LP+  +E+  
Sbjct: 623 EKTVKTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGLMGFQDALYKQHLPYSSDEAVE 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD------------MWGVT 373
              +  E I Y A++AS ++AA  G YQ+YEGS  S+GIL  D               V 
Sbjct: 683 FADRSMEAISYYAIKASSDLAAERGSYQSYEGSLWSRGILPIDSVEILVQERGADYIEVD 742

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW +L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 743 RSQTLDWDSLREVVKAQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L++DL   GLWD  M + L    GS+  I+ IP  LK LY T +E+  + ++D 
Sbjct: 803 TVVNPYLVKDLKARGLWDAVMVNDLKYYEGSVSKIDRIPDDLKALYATAFEVEPRWLVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  ++DQ+QSLN+Y+A  N  K+   +   W  GLKT  YYLR   A++  + T+ +
Sbjct: 863 ASRRQKWLDQAQSLNLYIAGANGKKLDITYRMAWYRGLKT-TYYLRALAASSTEKSTVSQ 921

Query: 554 TKMANAMASK 563
             M N ++S+
Sbjct: 922 GSM-NKVSSQ 930



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 748 DWDSLREVVKAQGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L++DL   GLWD  M + L    GS+  I+ IP  LK LY T +E+  + ++D A+ R 
Sbjct: 808 YLVKDLKARGLWDAVMVNDLKYYEGSVSKIDRIPDDLKALYATAFEVEPRWLVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            ++DQ+QSLN+Y+A  N  K+   +   W  GLKT  YYLR   A++  + T+ +  M N
Sbjct: 868 KWLDQAQSLNLYIAGANGKKLDITYRMAWYRGLKT-TYYLRALAASSTEKSTVSQGSM-N 925

Query: 963 AMASK 967
            ++S+
Sbjct: 926 KVSSQ 930



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 51/83 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLESWHIDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFQDGDWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           PN    L D +G+ F++ ++ YE
Sbjct: 505 PNNVPDLHDLYGKAFEERFEHYE 527



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   +  LP+  +E+     +  E I Y A++AS ++AA  G YQ+YEGS  S
Sbjct: 659 LGLMGFQDALYKQHLPYSSDEAVEFADRSMEAISYYAIKASSDLAAERGSYQSYEGSLWS 718

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 719 RGILPID 725


>gi|119504229|ref|ZP_01626309.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459737|gb|EAW40832.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 964

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/494 (40%), Positives = 282/494 (57%), Gaps = 21/494 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 453 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGDWTLFS 512

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G  F+D Y +YEA     E +  + + A+ +W  +L    ETG P++ +
Sbjct: 513 PNDVPDLHDLYGRAFEDRYAQYEAMAASGEIRVHKTLKAQAVWRKMLGMIFETGHPWVTF 572

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TS DE+AVCNL S+ L  +I   D   N  KL
Sbjct: 573 KDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIE--DGKLNLKKL 630

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +A  SNMRHRPIG+G+ G  D   ++ + +    +  
Sbjct: 631 RATVRTAIRMLDNVIDINYYSVPQAEQSNMRHRPIGLGIMGFQDALYKIDVSYASKGAVS 690

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD--------- 376
              Q  E + Y A+EAS E+AA  G Y +YEGS  SQG+   D   +             
Sbjct: 691 FADQSMEAVSYFAIEASSELAAERGAYSSYEGSLWSQGVFPLDSLDILVEQRGANYIEVN 750

Query: 377 ---LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
               +DW  LK ++AKHG+RNS  +A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 751 RDMTFDWPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 810

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+RDL    LWD  M + L   +GS+Q I+ IP  LK  Y T +EI  + ++D 
Sbjct: 811 TVVNPYLVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDDLKAKYSTAFEIEPRWLVDS 870

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + T++ 
Sbjct: 871 ASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKT-TYYLRSLAATGTEKSTVES 929

Query: 554 TKMANAMASKDARS 567
            K+ NA+AS  A S
Sbjct: 930 GKL-NAVASGAAES 942



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/190 (42%), Positives = 115/190 (60%), Gaps = 2/190 (1%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW  LK ++AKHG+RNS  +A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN
Sbjct: 755 FDWPELKGRVAKHGMRNSNCMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVN 814

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
            +L+RDL    LWD  M + L   +GS+Q I+ IP  LK  Y T +EI  + ++D A+ R
Sbjct: 815 PYLVRDLKARDLWDKVMVNDLKYFDGSVQSIDRIPDDLKAKYSTAFEIEPRWLVDSASRR 874

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
             +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + T++  K+ 
Sbjct: 875 QKWIDQAQSLNLYINNASGKKLDVTYRMAWYSGLKT-TYYLRSLAATGTEKSTVESGKL- 932

Query: 962 NAMASKDTRS 971
           NA+AS    S
Sbjct: 933 NAVASGAAES 942



 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 453 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGDWTLFS 512

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G  F+D Y +YEA
Sbjct: 513 PNDVPDLHDLYGRAFEDRYAQYEA 536



 Score = 46.2 bits (108), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++ + +    +     Q  E + Y A+EAS E+AA  G Y +YEGS  S
Sbjct: 667 LGIMGFQDALYKIDVSYASKGAVSFADQSMEAVSYFAIEASSELAAERGAYSSYEGSLWS 726

Query: 653 QGILQYD 659
           QG+   D
Sbjct: 727 QGVFPLD 733


>gi|390562551|ref|ZP_10244747.1| Ribonucleoside-diphosphate reductase subunit alpha [Nitrolancetus
           hollandicus Lb]
 gi|390172867|emb|CCF84057.1| Ribonucleoside-diphosphate reductase subunit alpha [Nitrolancetus
           hollandicus Lb]
          Length = 956

 Score =  366 bits (939), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 292/507 (57%), Gaps = 22/507 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD FM RV+ D QW+L  
Sbjct: 431 RKGAVCAYLETWHLDIEEFLDLRKNTGDERRRTHDMNTAHWVPDLFMTRVQQDGQWTLFS 490

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G +F++ Y  YEA          ++V A  LW  +L +  ETG P++ +
Sbjct: 491 PDDVPDLHDFYGREFEERYVAYEALADQGALSLFKRVRAVDLWRKMLTALFETGHPWITF 550

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD  N +S Q + G +  SNLCTEI+  TS+DEVAVCNL SI L  +I   +   +  +L
Sbjct: 551 KDPSNIRSAQDHAGVVHNSNLCTEILLNTSEDEVAVCNLGSINLVAHIE--NGQLDLNRL 608

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+YP+ EAR SN+RHRPIG+G  G  D   ++ L F  + +  
Sbjct: 609 QSTVRTAVRMLDNVIDLNYYPIPEARASNLRHRPIGLGQMGFQDALYELGLSFASDGAVE 668

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------TPTDL-- 377
              +  E I Y  + AS E+A   G Y +Y GS   +G+L  D   +       P D+  
Sbjct: 669 FADRSMEAIAYFTILASTELARERGTYPSYAGSKWDRGLLPIDTIQLLGEERGEPVDIDT 728

Query: 378 ---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
              +DW A++E + + G+RNS  +A  PTA+ A ILG ++S EP  +N+Y +  LSGEF 
Sbjct: 729 NSTFDWTAVREAVRQDGMRNSHTMAIAPTATIANILGVSQSIEPLYTNLYVKSNLSGEFT 788

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVNH L+RDL+  GLWD  M D L   +GSIQ I+ +P  LK+ Y T +E+    +++ A
Sbjct: 789 VVNHFLVRDLMARGLWDHQMLDDLKYFDGSIQPIDRVPPDLKERYLTAFEVDPDWLIECA 848

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-- 552
           A R  +ID  QSLN+Y+AE N  K+S M+F  W+ GLKT  YYLR+  A    + TID  
Sbjct: 849 ARRQKWIDMGQSLNLYVAEPNGRKLSEMYFRAWRKGLKT-TYYLRSLGATRNEKSTIDIN 907

Query: 553 -KTKMANAMASKDARSQEEIQADQEQA 578
            +      M ++ A S  +I+ D+  A
Sbjct: 908 SRGIQPRWMKARSASSDLQIERDEPAA 934



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 125/204 (61%), Gaps = 4/204 (1%)

Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
           +DW A++E + + G+RNS  +A  PTA+ A ILG ++S EP  +N+Y +  LSGEF VVN
Sbjct: 732 FDWTAVREAVRQDGMRNSHTMAIAPTATIANILGVSQSIEPLYTNLYVKSNLSGEFTVVN 791

Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
           H L+RDL+  GLWD  M D L   +GSIQ I+ +P  LK+ Y T +E+    +++ AA R
Sbjct: 792 HFLVRDLMARGLWDHQMLDDLKYFDGSIQPIDRVPPDLKERYLTAFEVDPDWLIECAARR 851

Query: 902 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID---KT 958
             +ID  QSLN+Y+AE N  K+S M+F  W+ GLKT  YYLR+  A    + TID   + 
Sbjct: 852 QKWIDMGQSLNLYVAEPNGRKLSEMYFRAWRKGLKT-TYYLRSLGATRNEKSTIDINSRG 910

Query: 959 KMANAMASKDTRSQEEIQADQEQA 982
                M ++   S  +I+ D+  A
Sbjct: 911 IQPRWMKARSASSDLQIERDEPAA 934



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG E  R  D+    W+PD FM RV+ D QW+L  
Sbjct: 431 RKGAVCAYLETWHLDIEEFLDLRKNTGDERRRTHDMNTAHWVPDLFMTRVQQDGQWTLFS 490

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G +F++ Y  YEA
Sbjct: 491 PDDVPDLHDFYGREFEERYVAYEA 514


>gi|429332140|ref|ZP_19212872.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida CSV86]
 gi|428763190|gb|EKX85373.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida CSV86]
          Length = 967

 Score =  366 bits (939), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDHAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 QRTVHTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADRSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LDETLDWAPVRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI  
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTITT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  149 bits (376), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRERVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI   K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTITTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 43.1 bits (100), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIAYGSDAAVEFADRSMEAVSYFAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|421529926|ref|ZP_15976440.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida S11]
 gi|402212613|gb|EJT83996.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida S11]
          Length = 819

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 306 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 365

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 366 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 425

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 426 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 483

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 484 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 543

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-------MWGVTPTDL- 377
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D         G    D+ 
Sbjct: 544 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVN 603

Query: 378 ----WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 604 LEESLDWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 662

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 663 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 722

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 723 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 781

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 782 GKL-NAVSS 789



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++E++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 609 DWAPVRERV-KKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 667

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 668 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 727

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 728 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 785

Query: 963 AMAS 966
           A++S
Sbjct: 786 AVSS 789



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 306 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 365

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 366 PSEVPDLHDLTGKAFEERYEYYEA 389



 Score = 45.4 bits (106), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 520 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 579

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 580 KGILPLD 586



 Score = 41.2 bits (95), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 390 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 442


>gi|319764327|ref|YP_004128264.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
           denitrificans BC]
 gi|330826375|ref|YP_004389678.1| ribonucleoside-diphosphate reductase subunit alpha [Alicycliphilus
           denitrificans K601]
 gi|317118888|gb|ADV01377.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans BC]
 gi|329311747|gb|AEB86162.1| ribonucleoside-diphosphate reductase, alpha subunit [Alicycliphilus
           denitrificans K601]
          Length = 970

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 199/493 (40%), Positives = 283/493 (57%), Gaps = 19/493 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+    WIPD FM+RV    QW+L  
Sbjct: 445 RKGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+  Y  YEA     E +  ++VPA  LW  +L    ETG P++ +
Sbjct: 505 PSDVPDLHDLYGQAFERAYTAYEAKVDSGELQLFKRVPAVDLWRKMLSMLFETGHPWITF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TS  E AVCNL S+ L  ++   D   +  KL
Sbjct: 565 KDPCNIRSPQQHVGVVHSSNLCTEITLNTSDTETAVCNLGSVNLARHLK--DGAIDHDKL 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V++AR+SN+RHRP+G+G+ G  D   ++R+P+  + +  
Sbjct: 623 RKTVSTAMRMLDNVIDINYYAVDKARDSNLRHRPVGLGLMGFQDALYELRIPYSSDAAVT 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E I Y A  AS E+A   G Y +YEGS  S+GIL  D              V  
Sbjct: 683 FADESMEAICYYAYWASTELARERGTYSSYEGSLWSKGILPLDSLELLAKERGGYVEVDR 742

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T   DW AL+ KI + G+RNS  IA  PTA+ + I+G + S EP   N+  +  LSGEF 
Sbjct: 743 TTRLDWDALRSKITQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSGEFT 802

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V+N +L+RDL +LGLWDD M   L    GS+  I+ +PQ +K LY T +E+    +++ A
Sbjct: 803 VINQYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRVPQNVKALYATAFEVAPAWLVEAA 862

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +    T++  
Sbjct: 863 ARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKT-TYYLRTQSATHVEMSTVNTR 921

Query: 555 KMANAMASKDARS 567
           ++    A  D++S
Sbjct: 922 QLNAVSAGTDSQS 934



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/196 (41%), Positives = 117/196 (59%), Gaps = 1/196 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T   DW AL+ KI + G+RNS  IA  PTA+ + I+G + S EP   N+  +  LSG
Sbjct: 740 VDRTTRLDWDALRSKITQDGMRNSNCIAIAPTATISNIVGVDASIEPSFGNLSVKSNLSG 799

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF V+N +L+RDL +LGLWDD M   L    GS+  I+ +PQ +K LY T +E+    ++
Sbjct: 800 EFTVINQYLVRDLKKLGLWDDVMLMDLKHFKGSLHAIDRVPQNVKALYATAFEVAPAWLV 859

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +    T+
Sbjct: 860 EAAARRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKT-TYYLRTQSATHVEMSTV 918

Query: 956 DKTKMANAMASKDTRS 971
           +  ++    A  D++S
Sbjct: 919 NTRQLNAVSAGTDSQS 934



 Score = 86.3 bits (212), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 51/85 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+    WIPD FM+RV    QW+L  
Sbjct: 445 RKGAVCAYLESWHLDVEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMDKGQWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+    L D +G+ F+  Y  YEA+
Sbjct: 505 PSDVPDLHDLYGQAFERAYTAYEAK 529



 Score = 47.0 bits (110), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++R+P+  + +     +  E I Y A  AS E+A   G Y +YEGS  S
Sbjct: 659 LGLMGFQDALYELRIPYSSDAAVTFADESMEAICYYAYWASTELARERGTYSSYEGSLWS 718

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 719 KGILPLD 725


>gi|359795994|ref|ZP_09298605.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           arsenitoxydans SY8]
 gi|359366037|gb|EHK67723.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           arsenitoxydans SY8]
          Length = 976

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 280/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G  F++ Y  YEA     + K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKYGRAFEEAYVGYEARVASGDLKLFKKMPALTLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y V++ARNSN RHRP+G+G+ G  D    MR+P+    
Sbjct: 627 DKIKRTVSIAMRMLDNVIDINYYAVDKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADRSMEAVCYHAYFASSLLAQERGRYQSYEGSLWSRGILPQDTLKMLREERGGHVD 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+  + ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKT-TYYLRTLGATSAEKST 924



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW  L+ +I +HG+RNS  IA  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKEHGMRNSNCIAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+  + ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPRWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKT-TYYLRTLGATSAEKST 924



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+ C  L D +G  F++ Y  YEA
Sbjct: 507 PSDCPDLHDKYGRAFEEAYVGYEA 530



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAQERGRYQSYEGSLWS 725

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 726 RGILPQD 732


>gi|398803255|ref|ZP_10562361.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           sp. CF318]
 gi|398097134|gb|EJL87446.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           sp. CF318]
          Length = 969

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 279/482 (57%), Gaps = 19/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGSWTLFS 500

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+ +Y  YEA     E K  R+V A  +W  +L    ETG P++ +
Sbjct: 501 PSDTPDLHDKFGKDFEKIYTAYEAKAERGEIKPSRKVQATDMWRKMLSMLFETGHPWITF 560

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS  E AVCNL S+ L  ++   D   +  KL
Sbjct: 561 KDACNVRSPQQHAGVVHSSNLCTEITLNTSDTETAVCNLGSVNLVQHLK--DGAVDHEKL 618

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y V++AR+SNMRHRP+G+G+ G  D   ++R+P+   E+  
Sbjct: 619 KKTITTAMRMLDNVIDINYYAVKKARDSNMRHRPVGLGIMGFQDCLYELRVPYASQEAVE 678

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVTPTD- 376
              +  E + Y A  AS E+A   G Y +Y+GS   +G+L  D          G    D 
Sbjct: 679 FADKSMEAVCYHAYWASTELAKERGKYASYKGSLWDKGVLPLDTLDMLAEQRGGYVEIDR 738

Query: 377 --LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
               DW AL++KIAK G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF 
Sbjct: 739 SATLDWEALRKKIAKDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFT 798

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V+NH+L+RDL  L LWDD M   L   +GS++ I+ +PQ +K LY T +EI    +++ A
Sbjct: 799 VINHYLVRDLKRLNLWDDVMVVDLKHFDGSLRPIDRVPQDVKALYATAFEIETSWIVEAA 858

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +A + T+   
Sbjct: 859 ARRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTQSATHAEKSTVTAG 917

Query: 555 KM 556
           KM
Sbjct: 918 KM 919



 Score =  149 bits (375), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL++KIAK G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF V+NH
Sbjct: 743 DWEALRKKIAKDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINH 802

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL  L LWDD M   L   +GS++ I+ +PQ +K LY T +EI    +++ AA R 
Sbjct: 803 YLVRDLKRLNLWDDVMVVDLKHFDGSLRPIDRVPQDVKALYATAFEIETSWIVEAAARRQ 862

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +A + T+   KM
Sbjct: 863 KWIDQAQSLNIYMAGASGKKLDDTYKLAWLRGLKT-TYYLRTQSATHAEKSTVTAGKM 919



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 51/86 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMRRVMEKGSWTLFS 500

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+ +Y  YEA+ 
Sbjct: 501 PSDTPDLHDKFGKDFEKIYTAYEAKA 526



 Score = 43.9 bits (102), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++R+P+   E+     +  E + Y A  AS E+A   G Y +Y+GS   
Sbjct: 655 LGIMGFQDCLYELRVPYASQEAVEFADKSMEAVCYHAYWASTELAKERGKYASYKGSLWD 714

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 715 KGVLPLD 721


>gi|381161286|ref|ZP_09870516.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora azurea NA-128]
 gi|379253191|gb|EHY87117.1| ribonucleoside-diphosphate reductase, alpha subunit
           [Saccharomonospora azurea NA-128]
          Length = 821

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 200/525 (38%), Positives = 299/525 (56%), Gaps = 31/525 (5%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFS 368

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE      E +  R+V A +LW  +L    ETG P++ +
Sbjct: 369 PDEVPDLHDLYGTAFAERYRAYEKAADAGEIRVFRRVSATQLWRRMLTMLFETGHPWITF 428

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DEVAVCNL S+ L  ++       +   L
Sbjct: 429 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVGA--NGLDVEAL 486

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V EA  SN+RHRP+G+G+ G +D   ++ +P   +E+  
Sbjct: 487 RRTVTTAVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGIPQASDEAVE 546

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------------- 372
              +  E + Y A+ AS E+AA  G Y ++ GS  S+G+L  D   +             
Sbjct: 547 FADRSMEVLSYHAISASAELAAERGAYSSFAGSLWSRGVLPIDSLRLLAEARGEGELDID 606

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           T T L DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGE
Sbjct: 607 TSTTL-DWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGE 665

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN  L+RDL   GLWDD++  +L  ++G +  I+ +P  LK LY T +EI  + ++D
Sbjct: 666 FTVVNPQLVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVD 725

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            AA R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+ 
Sbjct: 726 AAARRQKWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLR 784

Query: 553 KTK-MANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
            T    NA+          + A   +++ +  CR D+ E C   Q
Sbjct: 785 GTDGRLNAVTPT-------VPAVAVESVESAACRIDDPE-CEACQ 821



 Score =  147 bits (371), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 128/213 (60%), Gaps = 9/213 (4%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF VVN 
Sbjct: 612 DWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNP 671

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWDD++  +L  ++G +  I+ +P  LK LY T +EI  + ++D AA R 
Sbjct: 672 QLVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVDAAARRQ 731

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK-MA 961
            +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  T    
Sbjct: 732 KWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRGTDGRL 790

Query: 962 NAMASKDTRSQEEIQADQEQAMAAMICRRDNKE 994
           NA+          + A   +++ +  CR D+ E
Sbjct: 791 NAVTPT-------VPAVAVESVESAACRIDDPE 816



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 309 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFS 368

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 369 PDEVPDLHDLYGTAFAERYRAYE 391



 Score = 45.1 bits (105), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G +D   ++ +P   +E+     +  E + Y A+ AS E+AA  G Y ++ GS  S
Sbjct: 523 LGLMGFSDALFELGIPQASDEAVEFADRSMEVLSYHAISASAELAAERGAYSSFAGSLWS 582

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 583 RGVLPID 589


>gi|26987914|ref|NP_743339.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida KT2440]
 gi|24982623|gb|AAN66803.1|AE016309_5 ribonucleoside reductase, alpha subunit [Pseudomonas putida KT2440]
          Length = 959

 Score =  365 bits (938), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   + TKL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTTKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 42.0 bits (97), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|418292660|ref|ZP_12904591.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri ATCC 14405 = CCUG 16156]
 gi|379064074|gb|EHY76817.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri ATCC 14405 = CCUG 16156]
          Length = 964

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 293/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 499

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 500 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKNYKTLQAKDLWRKMLSMLFETGHPWLTF 559

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 560 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPRHI--VDGKLDTAKL 617

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +A+NSN++HRP+G+G+ G  D      +P+  + +  
Sbjct: 618 ERTVRTAVRMLDNVIDINYYSVPQAKNSNLKHRPVGLGIMGFQDALYLQHIPYGSDAAIE 677

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  SQG+L  D               V 
Sbjct: 678 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGVLPLDSQQILIEARGQKYIDVD 737

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T+  DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 738 LTESLDWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 796

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 797 TVINPYLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 856

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T+  
Sbjct: 857 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVST 915

Query: 554 TKMANAMAS 562
            K+ NA+++
Sbjct: 916 GKL-NAVSN 923



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/188 (43%), Positives = 121/188 (64%), Gaps = 3/188 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T+  DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 739 TESLDWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 797

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A
Sbjct: 798 VINPYLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAA 857

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T+   
Sbjct: 858 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVSTG 916

Query: 959 KMANAMAS 966
           K+ NA+++
Sbjct: 917 KL-NAVSN 923



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 440 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 499

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 500 PSEVPDLHDLTGKAFEERYEYYEA 523



 Score = 47.4 bits (111), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 654 LGIMGFQDALYLQHIPYGSDAAIEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 713

Query: 653 QGILQYD 659
           QG+L  D
Sbjct: 714 QGVLPLD 720


>gi|238879998|gb|EEQ43636.1| ribonucleoside-diphosphate reductase large chain [Candida albicans
           WO-1]
          Length = 583

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 170/266 (63%), Positives = 206/266 (77%), Gaps = 3/266 (1%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
           PN   GLSD +GE+F+ LY KYE+EG F  +V A KLW AIL SQ ETG PYMLYKDACN
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEG-FGTKVSAHKLWLAILHSQTETGGPYMLYKDACN 409

Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT--YNFTKLKDV 268
            KSNQ+N+GTIK SNLC EIVEY+S  E AVCNLAS+AL  Y+   +    ++F KL  V
Sbjct: 410 TKSNQKNIGTIKSSNLCCEIVEYSSPKETAVCNLASLALPTYLKTTEDAIGFDFEKLHSV 469

Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
            K++T+NLN++IDV  YPVE A  SN RHRPI +GVQGLADLF ++RLPFD   ++ LN 
Sbjct: 470 TKVLTRNLNRVIDVTKYPVETAEYSNKRHRPIALGVQGLADLFAELRLPFDSAMAKTLNI 529

Query: 329 QIFETIYYGALEASCEIAARDGPYQT 354
           QIFETIY+ ALEAS E+A ++GPY+T
Sbjct: 530 QIFETIYHAALEASVELAMKEGPYET 555



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           RPGAFAIY+EPWHGDIFD LE++KN G EE R RDLFYGLWIPD FM+RV+ ++ W+L  
Sbjct: 291 RPGAFAIYIEPWHGDIFDILEMRKNHGNEEMRTRDLFYGLWIPDLFMKRVKENSDWTLFS 350

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           PN   GLSD +GE+F+ LY KYE+EG 
Sbjct: 351 PNEAVGLSDVYGEEFEKLYCKYESEGF 377



 Score = 79.7 bits (195), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 537 YLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
           YL+T    +AI F  +K      + +++      I   +     A    + ++   +GVQ
Sbjct: 451 YLKT--TEDAIGFDFEKLHSVTKVLTRNL--NRVIDVTKYPVETAEYSNKRHRPIALGVQ 506

Query: 597 GLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           GLADLF ++RLPFD   ++ LN QIFETIY+ ALEAS E+A ++GPY+T
Sbjct: 507 GLADLFAELRLPFDSAMAKTLNIQIFETIYHAALEASVELAMKEGPYET 555



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 30/37 (81%)

Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           KLW AIL SQ ETG PYMLYKDACN KSNQ+N+  I+
Sbjct: 385 KLWLAILHSQTETGGPYMLYKDACNTKSNQKNIGTIK 421


>gi|398873083|ref|ZP_10628349.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM74]
 gi|398200699|gb|EJM87608.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM74]
          Length = 964

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/490 (40%), Positives = 291/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I  AD   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--ADGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  N + 
Sbjct: 624 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSNAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYDTFQGSLWSKGILPLDSQQILIEARGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 47.4 bits (111), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  N +     +  E + Y A++ASC++A   G Y T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSNAAVEFADKSMEAVSYYAIQASCDLADERGAYDTFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|254282207|ref|ZP_04957175.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
 gi|219678410|gb|EED34759.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [gamma proteobacterium NOR51-B]
          Length = 961

 Score =  365 bits (938), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 203/495 (41%), Positives = 285/495 (57%), Gaps = 21/495 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 452 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFS 511

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G+ F++ Y++YEA     E K  + + A+ LW  +L    ETG P+M +
Sbjct: 512 PNDVPDLHDLYGKAFEERYQQYEAMAASGELKLHKTLKAQSLWRKMLGMIFETGHPWMTF 571

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  +I   +   N  KL
Sbjct: 572 KDPCNLRSPQQHCGVVHSSNLCTEITLNTSADEIAVCNLGSVNLPQHIE--NGVLNLDKL 629

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +A  SN RHRPIG+GV G  D   ++ + +  +++  
Sbjct: 630 RSTIRTAIRMLDNVIDINYYSVPQAEQSNFRHRPIGMGVMGFQDALYKLDVAYGSDQAVS 689

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              Q  E I Y A+EAS E+A   G Y +YEGS  SQGI  +D               V 
Sbjct: 690 FADQSMEAISYYAIEASSELAEERGSYSSYEGSLWSQGIFPHDSLDLLIQHRGEDYIQVN 749

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DWA LK K+A +G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 750 RDQSMDWAPLKAKVAANGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 809

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L++DL   GLWD  M + L   +GS+Q I+ IP  LK  Y T +E+  + ++D 
Sbjct: 810 TVVNPYLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPDDLKAKYATAFEVEPRWLVDS 869

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + T++ 
Sbjct: 870 ASRRQKWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKT-TYYLRSLAATGTEKSTVES 928

Query: 554 TKMANAMASKDARSQ 568
            K+ NA++S  A  Q
Sbjct: 929 GKL-NAVSSGSATPQ 942



 Score =  139 bits (349), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 116/190 (61%), Gaps = 2/190 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA LK K+A +G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 755 DWAPLKAKVAANGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 814

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L++DL   GLWD  M + L   +GS+Q I+ IP  LK  Y T +E+  + ++D A+ R 
Sbjct: 815 YLVKDLKARGLWDKVMVNDLKYYDGSVQAIDRIPDDLKAKYATAFEVEPRWLVDSASRRQ 874

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + T++  K+ N
Sbjct: 875 KWIDQAQSLNLYINNASGKKLDVTYRMAWFNGLKT-TYYLRSLAATGTEKSTVESGKL-N 932

Query: 963 AMASKDTRSQ 972
           A++S     Q
Sbjct: 933 AVSSGSATPQ 942



 Score = 90.1 bits (222), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 452 RKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFS 511

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G+ F++ Y++YEA
Sbjct: 512 PNDVPDLHDLYGKAFEERYQQYEA 535



 Score = 50.1 bits (118), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 12/104 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  D   ++ + +  +++     Q  E I Y A+EAS E+A   G Y +YEGS  S
Sbjct: 666 MGVMGFQDALYKLDVAYGSDQAVSFADQSMEAISYYAIEASSELAEERGSYSSYEGSLWS 725

Query: 653 QGILQYDMWG------------VTPTDLWDWAALKVLALVYGLK 684
           QGI  +D               V      DWA LK      G++
Sbjct: 726 QGIFPHDSLDLLIQHRGEDYIQVNRDQSMDWAPLKAKVAANGMR 769


>gi|386010830|ref|YP_005929107.1| protein NrdA [Pseudomonas putida BIRD-1]
 gi|313497536|gb|ADR58902.1| NrdA [Pseudomonas putida BIRD-1]
          Length = 959

 Score =  365 bits (937), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   + TKL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTTKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|254483512|ref|ZP_05096739.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
 gi|214036233|gb|EEB76913.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
           [marine gamma proteobacterium HTCC2148]
          Length = 958

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/492 (40%), Positives = 286/492 (58%), Gaps = 21/492 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +F+EL+KNTG +  R  D+    WIPD FM+RV +   W+L  
Sbjct: 451 RKGAVCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFNGEDWTLFS 510

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F+  Y  YEA     E K  + V A  LW  +L    ETG P+M +
Sbjct: 511 PSDVPDLHDLYGVAFEQRYAHYEAMAAAGEIKLFKTVKAENLWRKMLGMLFETGHPWMTF 570

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I+  +   N  KL
Sbjct: 571 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPQHID--ENGLNLEKL 628

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           ++  +   + L+ +ID+N+Y V +A+NSN+ HRP+G+G+ G  D   +  L +   ++  
Sbjct: 629 RNTVRTAVRMLDNVIDINYYSVPQAKNSNLMHRPVGLGLMGFQDALYKQHLAYGSEQAVS 688

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
                 E I Y A+EAS E+AA  G Y +YEGS  SQG+   D               V 
Sbjct: 689 FADHSMEAISYYAIEASSELAAERGAYSSYEGSLWSQGVFPIDSLQRLIDERGADYIQVD 748

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T+  DW AL+ ++ ++G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 749 QTESMDWQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 808

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+RDL E GLWD  M + L   +GS+Q I+ IP  +K +Y T +E+  + ++D 
Sbjct: 809 TVVNPYLVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIKGIYSTAFEVEPRWLVDA 868

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+   N  K+   +   W  GLKT  YYLR+  A    + TID 
Sbjct: 869 ASRRQKWIDQAQSLNLYINNANGKKLDITYRMAWYSGLKT-TYYLRSLAATGTEKSTID- 926

Query: 554 TKMANAMASKDA 565
           T   NA++++ A
Sbjct: 927 TGTLNAVSNEAA 938



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  T+  DW AL+ ++ ++G+RNS ++A  PTA+ A I G ++S EP   N+Y + 
Sbjct: 743 DYIQVDQTESMDWQALRSQVQQNGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKS 802

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF VVN +L+RDL E GLWD  M + L   +GS+Q I+ IP  +K +Y T +E+  
Sbjct: 803 NLSGEFTVVNPYLVRDLKERGLWDGVMVNDLKYYDGSVQAIDRIPADIKGIYSTAFEVEP 862

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D A+ R  +IDQ+QSLN+Y+   N  K+   +   W  GLKT  YYLR+  A    
Sbjct: 863 RWLVDAASRRQKWIDQAQSLNLYINNANGKKLDITYRMAWYSGLKT-TYYLRSLAATGTE 921

Query: 952 QFTIDKTKMANAMASK 967
           + TID T   NA++++
Sbjct: 922 KSTID-TGTLNAVSNE 936



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 49/84 (58%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +F+EL+KNTG +  R  D+    WIPD FM+RV +   W+L  
Sbjct: 451 RKGAVCAYLETWHMDVEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFNGEDWTLFS 510

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G  F+  Y  YEA
Sbjct: 511 PSDVPDLHDLYGVAFEQRYAHYEA 534



 Score = 47.8 bits (112), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   +  L +   ++        E I Y A+EAS E+AA  G Y +YEGS  S
Sbjct: 665 LGLMGFQDALYKQHLAYGSEQAVSFADHSMEAISYYAIEASSELAAERGAYSSYEGSLWS 724

Query: 653 QGILQYDMW------------GVTPTDLWDWAALK 675
           QG+   D               V  T+  DW AL+
Sbjct: 725 QGVFPIDSLQRLIDERGADYIQVDQTESMDWQALR 759



 Score = 40.4 bits (93), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           +K+   V    LW  +L    ETG P+M +KD CN +S QQ++ V+ 
Sbjct: 541 IKLFKTVKAENLWRKMLGMLFETGHPWMTFKDPCNLRSPQQHVGVVH 587


>gi|293603287|ref|ZP_06685716.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818322|gb|EFF77374.1| ribonucleotide-diphosphate reductase alpha subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 976

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 196/479 (40%), Positives = 278/479 (58%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D +G  F++ Y  YE      E K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKYGRAFEEAYIGYEKRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDL 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y VE+ARNSN RHRP+G+G+ G  D    MR+P+    
Sbjct: 627 DKIKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKT-TYYLRTLGATSAEKST 924



 Score =  140 bits (352), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 111/179 (62%), Gaps = 1/179 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  +   DW  L+ +I +HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSTLDWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
           + A+ R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMAGASGKKLDDTYKLAWTRGLKT-TYYLRTLGATSAEKST 924



 Score = 89.0 bits (219), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 50/83 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L D +G  F++ Y  YE
Sbjct: 507 PSDCPDLHDKYGRAFEEAYIGYE 529



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWS 725

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 726 RGILPQD 732


>gi|397696776|ref|YP_006534659.1| ribonucleoside-diphosphate reductase subunit alp [Pseudomonas
           putida DOT-T1E]
 gi|421524166|ref|ZP_15970791.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida LS46]
 gi|397333506|gb|AFO49865.1| Ribonucleoside-diphosphate reductase subunit alp [Pseudomonas
           putida DOT-T1E]
 gi|402751977|gb|EJX12486.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida LS46]
          Length = 959

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   + TKL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTTKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|424068857|ref|ZP_17806306.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. avellanae str. ISPaVe013]
 gi|424073282|ref|ZP_17810700.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. avellanae str. ISPaVe037]
 gi|440722534|ref|ZP_20902912.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP34876]
 gi|440729378|ref|ZP_20909558.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP34881]
 gi|443642840|ref|ZP_21126690.1| Ribonucleotide-disphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. syringae B64]
 gi|407996203|gb|EKG36687.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. avellanae str. ISPaVe013]
 gi|407996263|gb|EKG36742.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. avellanae str. ISPaVe037]
 gi|440358701|gb|ELP96041.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP34881]
 gi|440361122|gb|ELP98364.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP34876]
 gi|443282857|gb|ELS41862.1| Ribonucleotide-disphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. syringae B64]
          Length = 970

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|418463214|ref|ZP_13034235.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora azurea SZMC 14600]
 gi|359734102|gb|EHK83084.1| ribonucleotide-diphosphate reductase subunit alpha
           [Saccharomonospora azurea SZMC 14600]
          Length = 802

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/482 (39%), Positives = 283/482 (58%), Gaps = 22/482 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 290 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFS 349

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE      E +  R+V A +LW  +L    ETG P++ +
Sbjct: 350 PDEVPDLHDLYGTAFAERYRAYEKAADAGEIRVFRRVSATQLWRRMLTMLFETGHPWITF 409

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DEVAVCNL S+ L  ++       +   L
Sbjct: 410 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEVAVCNLGSVNLARHVGA--NGLDVEAL 467

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V EA  SN+RHRP+G+G+ G +D   ++ +P   +E+  
Sbjct: 468 RRTVTTAVRMLDNVIDINFYTVPEAERSNLRHRPVGLGLMGFSDALFELGIPQASDEAVE 527

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------------- 372
              +  E + Y A+ AS E+AA  G Y ++ GS  S+G+L  D   +             
Sbjct: 528 FADRSMEVLSYHAISASAELAAERGAYSSFAGSLWSRGVLPIDSLRLLAEARGEGELDID 587

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           T T L DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGE
Sbjct: 588 TSTTL-DWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGE 646

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F VVN  L+RDL   GLWDD++  +L  ++G +  I+ +P  LK LY T +EI  + ++D
Sbjct: 647 FTVVNPQLVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVD 706

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            AA R  +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+ 
Sbjct: 707 AAARRQKWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLR 765

Query: 553 KT 554
            T
Sbjct: 766 GT 767



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/176 (41%), Positives = 114/176 (64%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E++   G+RNS ++A  PTA+ + I G  +S EP  SN++ +  +SGEF VVN 
Sbjct: 593 DWDSLRERVRTVGMRNSNVLAIAPTATISNICGVGQSIEPLFSNLFVKSNMSGEFTVVNP 652

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWDD++  +L  ++G +  I+ +P  LK LY T +EI  + ++D AA R 
Sbjct: 653 QLVRDLKRRGLWDDDLVAELKFHDGVLAPIDRVPDDLKALYATAFEIDSRWLVDAAARRQ 712

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+AE +   + +++ H W+ GLKT  YYLR++ A    + T+  T
Sbjct: 713 KWIDQAQSLNLYLAEPSGRALDALYRHAWRRGLKT-TYYLRSRAATQVEKSTLRGT 767



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PDEF+RRVE+D  W+L  
Sbjct: 290 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDEFLRRVEADEDWTLFS 349

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G  F + Y+ YE
Sbjct: 350 PDEVPDLHDLYGTAFAERYRAYE 372



 Score = 45.1 bits (105), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G +D   ++ +P   +E+     +  E + Y A+ AS E+AA  G Y ++ GS  S
Sbjct: 504 LGLMGFSDALFELGIPQASDEAVEFADRSMEVLSYHAISASAELAAERGAYSSFAGSLWS 563

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 564 RGVLPID 570


>gi|421615753|ref|ZP_16056773.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri KOS6]
 gi|409782289|gb|EKN61854.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri KOS6]
          Length = 966

 Score =  365 bits (937), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 292/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 442 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGTWTLFS 501

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 502 PSDVPDLHDLTGKAFEERYEYYEALIEYGKIKNYKTLQAKDLWRKMLSMLFETGHPWLTF 561

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  ++   D   +  KL
Sbjct: 562 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPNHM--VDGKLDTAKL 619

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 620 ERTVRTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAID 679

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  SQGIL  D               V 
Sbjct: 680 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEARGQKYIDVD 739

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T+  DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 740 LTESLDWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 798

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 799 TVINPYLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 858

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++ 
Sbjct: 859 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNT 917

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 918 GKL-NAVSS 925



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/188 (43%), Positives = 122/188 (64%), Gaps = 3/188 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           T+  DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 741 TESLDWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 799

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A
Sbjct: 800 VINPYLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAA 859

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  
Sbjct: 860 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTG 918

Query: 959 KMANAMAS 966
           K+ NA++S
Sbjct: 919 KL-NAVSS 925



 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 442 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGTWTLFS 501

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 502 PSDVPDLHDLTGKAFEERYEYYEA 525



 Score = 47.4 bits (111), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 656 LGIMGFQDALYLQHIPYGSDAAIDFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 715

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 716 QGILPLD 722


>gi|330811234|ref|YP_004355696.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|378952349|ref|YP_005209837.1| protein NrdA [Pseudomonas fluorescens F113]
 gi|423698791|ref|ZP_17673281.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens Q8r1-96]
 gi|327379342|gb|AEA70692.1| Ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|359762363|gb|AEV64442.1| NrdA [Pseudomonas fluorescens F113]
 gi|387996899|gb|EIK58229.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens Q8r1-96]
          Length = 963

 Score =  365 bits (936), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 291/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPTD 376
              +  E + Y A++ASC++A   G Y+T++GS  SQGIL  D   +            D
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIAQRGQKYIDVD 743

Query: 377 L---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
           L    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 926 AVSSGGNHGDDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 48.1 bits (113), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPLD 726



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|406834442|ref|ZP_11094036.1| ribonucleoside-diphosphate reductase subunit alpha [Schlesneria
           paludicola DSM 18645]
          Length = 940

 Score =  364 bits (935), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 299/524 (57%), Gaps = 25/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    WIPD FM+RV  +  W+L  
Sbjct: 419 RKGAVCSYLETWHLDIEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRQNGSWTLFS 478

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G+ F++ Y +YE      E    R+V A +LW  +L    ETG P++ +
Sbjct: 479 PDEVSDLHDLYGKAFEERYVEYERLADAGEMLLFRRVSAAELWRKMLTRLFETGHPWITF 538

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD  N +S Q ++G +  SNLCTEI+  TS DE AVCNL SI L  ++   D   +  +L
Sbjct: 539 KDPSNLRSPQDHVGVVHSSNLCTEILLNTSADETAVCNLGSINLAAHV--VDGQLDLERL 596

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   K+  + L+ +ID+N+YP  EA NSN RHRPIG+G+ G  D   ++R+ F   ++  
Sbjct: 597 RATVKVAVRMLDNVIDINYYPTPEAANSNRRHRPIGLGLMGFQDALCKLRISFASEQAVE 656

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD--------- 376
              Q  E I + A+ AS  +AA  G Y +Y GS   +G+L  D   +   +         
Sbjct: 657 FADQSMEAISHAAILASATLAAERGAYGSYAGSKWQRGLLPIDTLDLLEAERGEQVPVQR 716

Query: 377 --LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
               DW  +++ +A+ G+RNS ++A  PTA+ + I+G ++S EP   ++Y++  LSGEF 
Sbjct: 717 EGTLDWNVVRKAVAESGMRNSNVLAIAPTATISTIIGVSQSIEPAYKHLYAKSNLSGEFT 776

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
            VN  L+ +L ELGLWD  M D+L   +G++Q+I  IP +L+  + T +EI  K +++ A
Sbjct: 777 QVNEILVAELKELGLWDAQMLDELKYFDGTLQNIGRIPLELRRRFLTAFEIEPKWLIECA 836

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ QSLN+YMAE N  KM  M+F  W+ GLKT  YYLR+  A    + T+D  
Sbjct: 837 ARRQKWIDQGQSLNLYMAEPNGRKMQDMYFMAWEKGLKT-TYYLRSLAATQVEKSTLDVN 895

Query: 555 KMANA---MASKDARSQEEIQ-ADQEQAMAAMICRRDNK--EDC 592
           +       M ++ + S  EI+ +D+  +  +  CR D+   E C
Sbjct: 896 RFGVQPKWMKNRSSSSDIEIERSDETSSAVSAACRLDDPTCESC 939



 Score =  150 bits (378), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 134/220 (60%), Gaps = 7/220 (3%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  +++ +A+ G+RNS ++A  PTA+ + I+G ++S EP   ++Y++  LSGEF  VN 
Sbjct: 721 DWNVVRKAVAESGMRNSNVLAIAPTATISTIIGVSQSIEPAYKHLYAKSNLSGEFTQVNE 780

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+ +L ELGLWD  M D+L   +G++Q+I  IP +L+  + T +EI  K +++ AA R 
Sbjct: 781 ILVAELKELGLWDAQMLDELKYFDGTLQNIGRIPLELRRRFLTAFEIEPKWLIECAARRQ 840

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ QSLN+YMAE N  KM  M+F  W+ GLKT  YYLR+  A    + T+D  +   
Sbjct: 841 KWIDQGQSLNLYMAEPNGRKMQDMYFMAWEKGLKT-TYYLRSLAATQVEKSTLDVNRFGV 899

Query: 963 A---MASKDTRSQEEIQ-ADQEQAMAAMICRRDNK--EDC 996
               M ++ + S  EI+ +D+  +  +  CR D+   E C
Sbjct: 900 QPKWMKNRSSSSDIEIERSDETSSAVSAACRLDDPTCESC 939



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    WIPD FM+RV  +  W+L  
Sbjct: 419 RKGAVCSYLETWHLDIEEFLDLRKNTGDDRRRTHDMHTANWIPDLFMKRVRQNGSWTLFS 478

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D +G+ F++ Y +YE
Sbjct: 479 PDEVSDLHDLYGKAFEERYVEYE 501



 Score = 43.5 bits (101), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
           R ++   +G+ G  D   ++R+ F   ++     Q  E I + A+ AS  +AA  G Y +
Sbjct: 626 RRHRPIGLGLMGFQDALCKLRISFASEQAVEFADQSMEAISHAAILASATLAAERGAYGS 685

Query: 646 YEGSPVSQGILQYD 659
           Y GS   +G+L  D
Sbjct: 686 YAGSKWQRGLLPID 699


>gi|374705839|ref|ZP_09712709.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           S9]
          Length = 969

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/510 (39%), Positives = 298/510 (58%), Gaps = 24/510 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLHKTIQAKDLWRKMLSMLFETGHPWLTF 564

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 565 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 623 QKTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 683 FADKSMEAVSYYAIQASCDLADERGSYETFDGSLWSKGILPLDSQQILIEQRGQKYIDVD 742

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 743 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 801

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 802 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDA 861

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++ 
Sbjct: 862 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNT 920

Query: 554 TKMANAMAS--KDARSQEEIQADQEQAMAA 581
            K+ NA++S   D  S    +A  +  MAA
Sbjct: 921 GKL-NAVSSGGNDGLSAAPGKAAPQVEMAA 949



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 748 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 806

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 807 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQ 866

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 867 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 924

Query: 963 AMAS 966
           A++S
Sbjct: 925 AVSS 928



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 659 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFDGSLWS 718

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 719 KGILPLD 725


>gi|398969934|ref|ZP_10683131.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM30]
 gi|398141214|gb|EJM30144.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM30]
          Length = 964

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN RHRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T+ GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFNGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.8 bits (107), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T+ GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFNGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|424924397|ref|ZP_18347758.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens R124]
 gi|404305557|gb|EJZ59519.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens R124]
          Length = 964

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN RHRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFRHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T+ GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFNGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.8 bits (107), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T+ GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFNGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|85714831|ref|ZP_01045817.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
 gi|85698317|gb|EAQ36188.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrobacter sp.
           Nb-311A]
          Length = 956

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/480 (41%), Positives = 275/480 (57%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FMRRVE D  W+L  
Sbjct: 437 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRRVEEDGMWTLFS 496

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F + Y  YE      E +  +QV A  LW  +L    ETG P++ +
Sbjct: 497 PDETPDLHDLTGKAFTERYACYEEKAARGELRVTKQVRAVDLWRRMLTMLFETGHPWITF 556

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS  EVAVCNL S+ L  +I   D   +   L
Sbjct: 557 KDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVSHIK--DGKLDHEHL 614

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               +I  + L+ ++DVNFY + EAR SN+RHRP+G+GV G  D    +RLP+  N +  
Sbjct: 615 ARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGVMGFQDALNILRLPYASNGAVS 674

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
              +  E I Y A+  S E+AA  G Y +Y+GS  S+GIL  D              +  
Sbjct: 675 FADESMEAIAYYAISGSVELAAERGRYPSYQGSLWSKGILPLDSLTLVDEARGAAVDIDR 734

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW +L+E +   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  +SG+F 
Sbjct: 735 SSRLDWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFT 794

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+RDL   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI    ++D A
Sbjct: 795 VVNAHLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEIDSSWLIDAA 854

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y+A  +  K+ +++ H WK GLKT  YYLR++ A +  + T+  T
Sbjct: 855 ARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEKSTLKGT 913



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E +   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  +SG+F VVN 
Sbjct: 739 DWDSLRESVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNA 798

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+RDL   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI    ++D AA R 
Sbjct: 799 HLVRDLKARGLWDEVMISDLKYFDGSVGQIDRVPDDLKALYATAFEIDSSWLIDAAARRQ 858

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+A  +  K+ +++ H WK GLKT  YYLR++ A +  + T+  T
Sbjct: 859 KWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEKSTLKGT 913



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 49/83 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FMRRVE D  W+L  
Sbjct: 437 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMRRVEEDGMWTLFS 496

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D  G+ F + Y  YE
Sbjct: 497 PDETPDLHDLTGKAFTERYACYE 519



 Score = 49.3 bits (116), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  D    +RLP+  N +     +  E I Y A+  S E+AA  G Y +Y+GS  S
Sbjct: 651 LGVMGFQDALNILRLPYASNGAVSFADESMEAIAYYAISGSVELAAERGRYPSYQGSLWS 710

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 711 KGILPLD 717


>gi|398910724|ref|ZP_10655187.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM49]
 gi|398959036|ref|ZP_10677902.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM33]
 gi|398145745|gb|EJM34522.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM33]
 gi|398185315|gb|EJM72724.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM49]
          Length = 963

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 293/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 EFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 920

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 921 TGKL-NAVSSGGNHGEDSV 938



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 926 AVSSGGNHGEDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEA 528



 Score = 46.6 bits (109), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726


>gi|312795098|ref|YP_004028020.1| ribonucleoside-diphosphate reductase subunit alpha [Burkholderia
           rhizoxinica HKI 454]
 gi|312166873|emb|CBW73876.1| Ribonucleoside-diphosphate reductase alpha chain (EC 1.17.4.1)
           [Burkholderia rhizoxinica HKI 454]
          Length = 1046

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 200/494 (40%), Positives = 286/494 (57%), Gaps = 21/494 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 500 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFS 559

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P++C  L D +G +F+  Y  YE      E K  +++PA +LW  +L    ETG P++ +
Sbjct: 560 PSSCPDLHDKFGAEFEQAYVAYEEKAARGELKLFKKIPAAQLWRKMLGMLFETGHPWITF 619

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP-ADKTY--NF 262
           KD C  +S QQ++G +  SNLCTEI   TS +E+AVCNL S+ L  ++   AD  Y  + 
Sbjct: 620 KDPCXVRSPQQHVGVVHSSNLCTEITLNTSDNEIAVCNLGSVNLVAHMKQGADXGYVLDH 679

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK    +  + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D    +R P+   +
Sbjct: 680 DKLKRTISVAMRMLDNVIDINYYAVAKARNSNLKHRPVGMGIMGFQDCLHLLRTPYASQQ 739

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E I Y A  AS E+A+  G Y +Y GS   +GIL  D              
Sbjct: 740 AVEFADRSMEAICYYAYWASTELASERGRYSSYRGSLWDRGILPQDTLKLLADSRGGYVE 799

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  ++  DWAAL+E+IA HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 800 VDSSETMDWAALRERIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 859

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL   GLWD+ M   L   +GS+  I+ IP  L++ Y T +E+  K ++
Sbjct: 860 EFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPADLRETYATAFEVDPKWLV 919

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + AA R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +  + T+
Sbjct: 920 EAAARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKT-TYYLRTIAATHVEKSTV 978

Query: 552 DKTKMANAMASKDA 565
               + NA+ S D 
Sbjct: 979 AHGAL-NAVPSSDG 991



 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 119/193 (61%), Gaps = 2/193 (1%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  ++  DWAAL+E+IA HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 800 VDSSETMDWAALRERIATHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 859

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF VVN +L+RDL   GLWD+ M   L   +GS+  I+ IP  L++ Y T +E+  K ++
Sbjct: 860 EFTVVNEYLVRDLKARGLWDEVMVADLKYFDGSLARIDRIPADLRETYATAFEVDPKWLV 919

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQ+QSLNIYMA  +  K+  ++   W  GLKT  YYLRT  A +  + T+
Sbjct: 920 EAAARRQKWIDQAQSLNIYMAGASGKKLDEIYKLAWLRGLKT-TYYLRTIAATHVEKSTV 978

Query: 956 DKTKMANAMASKD 968
               + NA+ S D
Sbjct: 979 AHGAL-NAVPSSD 990



 Score = 86.7 bits (213), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 50/83 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV     W+L  
Sbjct: 500 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGGDWTLFS 559

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P++C  L D +G +F+  Y  YE
Sbjct: 560 PSSCPDLHDKFGAEFEQAYVAYE 582



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R P+   ++     +  E I Y A  AS E+A+  G Y +Y GS   
Sbjct: 719 MGIMGFQDCLHLLRTPYASQQAVEFADRSMEAICYYAYWASTELASERGRYSSYRGSLWD 778

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  ++  DWAAL+     +G++
Sbjct: 779 RGILPQDTLKLLADSRGGYVEVDSSETMDWAALRERIATHGMR 821


>gi|167035229|ref|YP_001670460.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida GB-1]
 gi|166861717|gb|ABZ00125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida GB-1]
          Length = 959

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGIMGFQDALYLQHIAYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 43.1 bits (100), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIAYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|399001062|ref|ZP_10703781.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM18]
 gi|398128519|gb|EJM17906.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM18]
          Length = 964

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 290/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|426411031|ref|YP_007031130.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           UW4]
 gi|426269248|gb|AFY21325.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           UW4]
          Length = 963

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 293/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 DFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 920

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 921 TGKL-NAVSSGGNHGEDSV 938



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 926 AVSSGGNHGEDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFEERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVDFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726


>gi|398929713|ref|ZP_10664117.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM48]
 gi|398166442|gb|EJM54537.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM48]
          Length = 964

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 290/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LQRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGSYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|422647074|ref|ZP_16710205.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330960619|gb|EGH60879.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 970

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|398986356|ref|ZP_10691515.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM24]
 gi|399015511|ref|ZP_10717781.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM16]
 gi|398108474|gb|EJL98435.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM16]
 gi|398152325|gb|EJM40846.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM24]
          Length = 964

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 290/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  148 bits (373), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/193 (42%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|397687575|ref|YP_006524894.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri DSM 10701]
 gi|395809131|gb|AFN78536.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           stutzeri DSM 10701]
          Length = 965

 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/489 (40%), Positives = 293/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 500

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 501 PSEVPDLHDLTGKAFEERYEYYEAMIEYGKIKNHKTLQAKDLWRKMLSMLFETGHPWLTF 560

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  KL
Sbjct: 561 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLPNHI--VDGKLDTAKL 618

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 619 ERTVRTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAID 678

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  SQGIL  D               + 
Sbjct: 679 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEARGQKYIDID 738

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 739 LSESLDWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 797

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 798 TVINPYLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 857

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++ 
Sbjct: 858 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNT 916

Query: 554 TKMANAMAS 562
            K+ NA+++
Sbjct: 917 GKL-NAVSN 924



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 120/184 (65%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K+G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 744 DWAPVRARV-KNGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 802

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 803 YLVRDLKARGLWDAVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 862

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 863 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 920

Query: 963 AMAS 966
           A+++
Sbjct: 921 AVSN 924



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 441 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 500

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 501 PSEVPDLHDLTGKAFEERYEYYEA 524



 Score = 47.4 bits (111), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 655 LGIMGFQDALYLQHIPYGSDAAIDFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 714

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 715 QGILPLD 721


>gi|15791174|ref|NP_280998.1| ribonucleotide-diphosphate reductase alpha subunit [Halobacterium
           sp. NRC-1]
 gi|169236930|ref|YP_001690130.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
 gi|10581792|gb|AAG20478.1| ribonucleoside reductase large chain [Halobacterium sp. NRC-1]
 gi|167727996|emb|CAP14784.1| ribonucleoside-diphosphate reductase alpha subunit [Halobacterium
           salinarum R1]
          Length = 804

 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 186/478 (38%), Positives = 285/478 (59%), Gaps = 19/478 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA A YL  WH D   F +L++NTG E  R  D+    WIPD FM RV +D QW+L  
Sbjct: 294 RRGAAAAYLACWHLDFPAFCDLRRNTGDERRRTHDMNTAAWIPDLFMERVRADKQWTLFS 353

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA---EGKFIR--QVPARKLWFAILDSQIETGTPYMLY 205
           P     L + +G  F + Y++YEA   +G   R  +V A  LW  +L    ETG P++ +
Sbjct: 354 PKETGDLYELYGSDFAERYREYEAMADDGDIQRFERVDATDLWRTMLTRLFETGHPWLTF 413

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q + GT++ SNLCTEI   TS++E AVCNL S+ L  +++  D   +  +L
Sbjct: 414 KDPCNVRSPQDHAGTVRSSNLCTEITLNTSEEETAVCNLGSVNLARHLDDGD--IDREQL 471

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +  +   + L+ ++D+NFYP E A  SNMRHRP+G+GV G  D   QMR+P   +++  
Sbjct: 472 SETVETAMRMLDNVVDLNFYPTENAERSNMRHRPVGLGVMGFHDALQQMRVPMASDDALD 531

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
               + E + Y A+ AS ++AA  G Y++YEGS   + +   D              V  
Sbjct: 532 RADALQEYVAYHAIGASADLAAERGTYESYEGSKWDRDVFPQDTVDRLESERGREIPVPR 591

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
            +  DW+ +++++A HG+RNS  +A  PTA+ + I G   S EP  SN+Y +  +SG+F 
Sbjct: 592 EERLDWSDVRQRVATHGMRNSNTMAVAPTATISTIAGTTPSIEPVYSNLYVKSNMSGDFT 651

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN  L+ DL E  LW + ++D+L  ++GS+Q+++ +P+ +++LY+T +EI  +  L +A
Sbjct: 652 VVNDRLVADLEERDLWTEELRDKLTYHDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLA 711

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           A RG +IDQSQS+N++  E + +K+S ++   W+LGLKT  YYLRT  A+   + T+D
Sbjct: 712 ARRGVWIDQSQSVNVFFPETDGSKLSEVYQTAWELGLKT-TYYLRTLGASQIEKTTLD 768



 Score =  155 bits (392), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 119/174 (68%), Gaps = 1/174 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW+ +++++A HG+RNS  +A  PTA+ + I G   S EP  SN+Y +  +SG+F VVN 
Sbjct: 596 DWSDVRQRVATHGMRNSNTMAVAPTATISTIAGTTPSIEPVYSNLYVKSNMSGDFTVVND 655

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+ DL E  LW + ++D+L  ++GS+Q+++ +P+ +++LY+T +EI  +  L +AA RG
Sbjct: 656 RLVADLEERDLWTEELRDKLTYHDGSVQELDAVPEDVQELYRTAFEIDPRHQLRLAARRG 715

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956
            +IDQSQS+N++  E + +K+S ++   W+LGLKT  YYLRT  A+   + T+D
Sbjct: 716 VWIDQSQSVNVFFPETDGSKLSEVYQTAWELGLKT-TYYLRTLGASQIEKTTLD 768



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA A YL  WH D   F +L++NTG E  R  D+    WIPD FM RV +D QW+L  
Sbjct: 294 RRGAAAAYLACWHLDFPAFCDLRRNTGDERRRTHDMNTAAWIPDLFMERVRADKQWTLFS 353

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P     L + +G  F + Y++YEA
Sbjct: 354 PKETGDLYELYGSDFAERYREYEA 377



 Score = 44.7 bits (104), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  D   QMR+P   +++      + E + Y A+ AS ++AA  G Y++YEGS   
Sbjct: 508 LGVMGFHDALQQMRVPMASDDALDRADALQEYVAYHAIGASADLAAERGTYESYEGSKWD 567

Query: 653 QGILQYD 659
           + +   D
Sbjct: 568 RDVFPQD 574


>gi|148546453|ref|YP_001266555.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida F1]
 gi|395447645|ref|YP_006387898.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida ND6]
 gi|148510511|gb|ABQ77371.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           putida F1]
 gi|388561642|gb|AFK70783.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           putida ND6]
          Length = 959

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 289/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVN 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LEETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|119713587|gb|ABL97638.1| ribonucleotide-diphosphate reductase alpha subunit [uncultured
           marine bacterium EB0_39H12]
          Length = 955

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/511 (39%), Positives = 294/511 (57%), Gaps = 25/511 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    W+PD F++RV  D +W+L  
Sbjct: 442 RKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKWTLFT 501

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK-----FIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G +F+  Y++YE + K     F ++V A+ LW  +L    ETG P++ +
Sbjct: 502 PSDTPDLHDLYGLEFEKRYEEYETQTKTGEIEFFKEVEAKDLWKKMLSMVFETGHPWITF 561

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS+DE+AVCNL S+ L  +I   D   +  KL
Sbjct: 562 KDVCNLRSPQQHTGVVHSSNLCTEITLNTSQDEIAVCNLGSVNLTHHIK--DGKMDEEKL 619

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V+ A  SNM+HRPIG+G+ G  D    +  P+   E+  
Sbjct: 620 EKTINTAIRMLDNVIDINFYAVKAAETSNMKHRPIGLGIMGFHDALYMLETPYASQEAVD 679

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
              +  E + Y A++AS ++A   G YQ+YEGS  SQGIL  D   +             
Sbjct: 680 FADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWSQGILPIDSIKLLKESRGEDYLEMD 739

Query: 375 -TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW  L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 740 ESSSMDWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 799

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V N  ++ +L  LGLWD  M + L   +GS++ I  IP+++K+LY T ++I  + ++D 
Sbjct: 800 TVTNIPMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLIDA 859

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQSQSLN+Y+ E N  K+  M+   W  GLKT  YYLR++ A  A + TI  
Sbjct: 860 ASRRQKWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKT-TYYLRSRSATTAEKSTIST 918

Query: 554 TKMANAMASKDARSQEEIQADQEQAMAAMIC 584
            ++ NA++   A +Q E+Q  Q    A   C
Sbjct: 919 GEL-NAVS---ATAQPEVQP-QNNTTAPSAC 944



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 6/206 (2%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V N 
Sbjct: 745 DWDGLREIVRNQGIRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVTNI 804

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            ++ +L  LGLWD  M + L   +GS++ I  IP+++K+LY T ++I  + ++D A+ R 
Sbjct: 805 PMVENLKRLGLWDSVMINDLKYYDGSVKGISRIPEEVKELYATAFDIEPRWLIDAASRRQ 864

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQSQSLN+Y+ E N  K+  M+   W  GLKT  YYLR++ A  A + TI   ++ N
Sbjct: 865 KWIDQSQSLNLYIDEPNGKKLDIMYRMAWLRGLKT-TYYLRSRSATTAEKSTISTGEL-N 922

Query: 963 AMASKDTRSQEEIQADQEQAMAAMIC 988
           A+++    +Q E+Q  Q    A   C
Sbjct: 923 AVSAT---AQPEVQP-QNNTTAPSAC 944



 Score = 84.3 bits (207), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    W+PD F++RV  D +W+L  
Sbjct: 442 RKGAVCSYLETWHVDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFLKRVSEDKKWTLFT 501

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+    L D +G +F+  Y++YE +
Sbjct: 502 PSDTPDLHDLYGLEFEKRYEEYETQ 526



 Score = 48.5 bits (114), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +  P+   E+     +  E + Y A++AS ++A   G YQ+YEGS  S
Sbjct: 656 LGIMGFHDALYMLETPYASQEAVDFADKSMEMVSYYAIKASSDLAKERGAYQSYEGSLWS 715

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 716 QGILPID 722


>gi|403739758|ref|ZP_10952094.1| ribonucleoside-diphosphate reductase alpha subunit [Austwickia
           chelonae NBRC 105200]
 gi|403190501|dbj|GAB78864.1| ribonucleoside-diphosphate reductase alpha subunit [Austwickia
           chelonae NBRC 105200]
          Length = 847

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/481 (39%), Positives = 285/481 (59%), Gaps = 20/481 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    WIPDEFMRR+ESD+ W+L  
Sbjct: 324 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDEFMRRLESDSSWTLFS 383

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +GE F   Y +YEA     E +  R++PA+ LW  +L    ETG P++ +
Sbjct: 384 PDETPDLHDLYGEDFSRRYAEYEAAADRGEIRLHRRIPAKDLWRRMLTMLFETGHPWITF 443

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   T+ DEVAVCNLAS+ L  ++ P+    +  KL
Sbjct: 444 KDPCNLRSPQQHAGVVHSSNLCTEITLNTTSDEVAVCNLASVNLARHVTPSG--LDVDKL 501

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N Y + E R SN+RHRP+G+G+ G  D    + +P+  +++  
Sbjct: 502 RRTVRTAVRMLDNVIDINHYTIPETRRSNLRHRPVGLGLMGHQDALFTLGIPYASDDAVD 561

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  ET+ Y A+EAS ++AA  G YQ+YEGS  S+GIL  D               + 
Sbjct: 562 FADRSTETLSYFAIEASADLAADRGTYQSYEGSLWSRGILPIDSLRLLAQARHDGELDID 621

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW  L++ +  +G+RNS ++A  PTA+ + I G   S EP   N++ +  +SG+F
Sbjct: 622 TSSTLDWDRLRDHVQANGMRNSNVMAIAPTATISNICGVAASIEPQFQNLFVKANMSGDF 681

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+ DL + GLWD+ M   L  ++G++  I+ IP+ L+ +Y T ++I  + ++  
Sbjct: 682 TVVNGHLVADLKKYGLWDEEMIADLKYHDGALARIDRIPEDLRRIYATAFDIDPRWLIAA 741

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+AE +   +  ++   W+ GLKT  YYLR + A    + T+  
Sbjct: 742 ASRRQKWIDQAQSLNLYVAEPSGRALDELYRSAWRSGLKT-TYYLRARAATQVEKSTLRG 800

Query: 554 T 554
           T
Sbjct: 801 T 801



 Score =  126 bits (316), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 108/176 (61%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++ +  +G+RNS ++A  PTA+ + I G   S EP   N++ +  +SG+F VVN 
Sbjct: 627 DWDRLRDHVQANGMRNSNVMAIAPTATISNICGVAASIEPQFQNLFVKANMSGDFTVVNG 686

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+ DL + GLWD+ M   L  ++G++  I+ IP+ L+ +Y T ++I  + ++  A+ R 
Sbjct: 687 HLVADLKKYGLWDEEMIADLKYHDGALARIDRIPEDLRRIYATAFDIDPRWLIAAASRRQ 746

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+AE +   +  ++   W+ GLKT  YYLR + A    + T+  T
Sbjct: 747 KWIDQAQSLNLYVAEPSGRALDELYRSAWRSGLKT-TYYLRARAATQVEKSTLRGT 801



 Score = 94.4 bits (233), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    WIPDEFMRR+ESD+ W+L  
Sbjct: 324 RKGAACAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTAHWIPDEFMRRLESDSSWTLFS 383

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +GE F   Y +YEA
Sbjct: 384 PDETPDLHDLYGEDFSRRYAEYEA 407



 Score = 49.3 bits (116), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    + +P+  +++     +  ET+ Y A+EAS ++AA  G YQ+YEGS  S
Sbjct: 538 LGLMGHQDALFTLGIPYASDDAVDFADRSTETLSYFAIEASADLAADRGTYQSYEGSLWS 597

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 598 RGILPID 604


>gi|121606274|ref|YP_983603.1| ribonucleotide-diphosphate reductase subunit alpha [Polaromonas
           naphthalenivorans CJ2]
 gi|120595243|gb|ABM38682.1| ribonucleoside-diphosphate reductase, alpha subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 967

 Score =  363 bits (931), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 203/491 (41%), Positives = 281/491 (57%), Gaps = 20/491 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 439 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMRRVMEKGSWTLFS 498

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKL-----WFAILDSQIETGTPYMLY 205
           P+    L D +G+ F+  Y  YEA  +     P+RKL     W  +L    ETG P++ +
Sbjct: 499 PSDTPDLHDKFGQDFEKAYVAYEARAERGELKPSRKLQATDMWRKMLSMLFETGHPWITF 558

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS  E AVCNL SI L  ++   D   +  KL
Sbjct: 559 KDACNIRSPQQHAGVVHSSNLCTEITLNTSATETAVCNLGSINLVQHLK--DGALDHDKL 616

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ +ID+N+Y VE+AR+SNMRHRP+G+G+ G  D   ++R+P+    +  
Sbjct: 617 KKTITTAMRMLDNVIDINYYAVEKARHSNMRHRPVGLGLMGFQDCLYELRVPYASQAAVE 676

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG-----------VTP 374
                 E I Y A  AS E+A   G Y++Y+GS   QGIL  D              V  
Sbjct: 677 FADTSMEAICYHAYWASTELARERGQYESYKGSLWDQGILPLDTLDMLAKERGGYVEVDR 736

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL++KIA  G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF 
Sbjct: 737 SATLDWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFT 796

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V+NH+L+RDL +LGLWDD M   L   +GS++ I+ +P  +K LY T +EI    +++  
Sbjct: 797 VINHYLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALYATAFEIETSWLVEAG 856

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +A + T+   
Sbjct: 857 SRRQKWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKT-TYYLRTQSATHAEKSTVQAG 915

Query: 555 KMANAMASKDA 565
           KM N+++S  A
Sbjct: 916 KM-NSVSSAPA 925



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/184 (43%), Positives = 117/184 (63%), Gaps = 2/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL++KIA  G+RNS  +A  PTA+ + I+G +   EP   N+  +  LSGEF V+NH
Sbjct: 741 DWDALRQKIATDGMRNSNCVAIAPTATISNIIGVDACIEPCFGNLSVKSNLSGEFTVINH 800

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWDD M   L   +GS++ I+ +P  +K LY T +EI    +++  + R 
Sbjct: 801 YLVRDLKKLGLWDDVMVVDLKHFDGSLRPIDRVPNDIKALYATAFEIETSWLVEAGSRRQ 860

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYMA  +  K+   +   W  GLKT  YYLRT+ A +A + T+   KM N
Sbjct: 861 KWIDQAQSLNIYMAGASGKKLDETYKLAWVRGLKT-TYYLRTQSATHAEKSTVQAGKM-N 918

Query: 963 AMAS 966
           +++S
Sbjct: 919 SVSS 922



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 49/86 (56%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FMRRV     W+L  
Sbjct: 439 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMRRVMEKGSWTLFS 498

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G+ F+  Y  YEA  
Sbjct: 499 PSDTPDLHDKFGQDFEKAYVAYEARA 524



 Score = 43.5 bits (101), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++R+P+    +        E I Y A  AS E+A   G Y++Y+GS   
Sbjct: 653 LGLMGFQDCLYELRVPYASQAAVEFADTSMEAICYHAYWASTELARERGQYESYKGSLWD 712

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 713 QGILPLD 719


>gi|66046946|ref|YP_236787.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257653|gb|AAY38749.1| Ribonucleoside-diphosphate reductase [Pseudomonas syringae pv.
           syringae B728a]
          Length = 970

 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEHYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEHYEA 528



 Score = 46.2 bits (108), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726


>gi|348617977|ref|ZP_08884510.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Candidatus Glomeribacter gigasporarum BEG34]
 gi|347816682|emb|CCD29168.1| Ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Candidatus Glomeribacter gigasporarum BEG34]
          Length = 950

 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 202/509 (39%), Positives = 290/509 (56%), Gaps = 25/509 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  RA D+    WIPD FM+RV +DAQW+L  
Sbjct: 433 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRAHDMNTANWIPDLFMKRVLADAQWTLFS 492

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L + +G  F+  Y  YE      E K  +++PA +LW  +L    ETG P++ +
Sbjct: 493 PSDCPDLHEKYGADFEAAYLDYEEKAARGEIKLFKKMPAAQLWRKMLGMLFETGHPWVTF 552

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T+  E+AVCNL SI L  ++  AD      + 
Sbjct: 553 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNDSEIAVCNLGSINLVAHLRAADNGALRLDH 612

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            KLK   +   + L+ +ID+N+Y V +AR+SN++HRP+G+G+ G  D    +R+P+    
Sbjct: 613 DKLKKTIQTALRMLDNVIDINYYAVAKARDSNLKHRPVGLGIMGFQDCLHALRIPYASEV 672

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS E+A   G Y +Y+GS  S+GIL  D              
Sbjct: 673 AVEFADRSMEAVCYYAYWASTELAQERGRYSSYDGSLWSRGILPQDTLALLAQARGGHVE 732

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW AL+ +IA++G+RNS  +A  PTA+ + I+G +   EP   N++ +  LSG
Sbjct: 733 VDESGTLDWEALRRRIARYGMRNSNCVAIAPTATISNIVGVSACIEPTYQNLFVKSNLSG 792

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL    LWD  M   L   +G +  I+ +P  L+DLY T +EI  K ++
Sbjct: 793 EFTVVNEYLVRDLKARDLWDAVMIADLKYFDGMLARIDRVPADLRDLYATAFEIDPKWLV 852

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           + AA R  +IDQSQSLNIYMA  +  K+  ++   W+ GLKT  YYLRT  A +     I
Sbjct: 853 EAAARRQKWIDQSQSLNIYMAGASGKKLDEIYRLAWRRGLKT-TYYLRTMAATH-----I 906

Query: 552 DKTKMANAMASKDARSQEEIQADQEQAMA 580
           +K+ +A+   +  A S E       Q  A
Sbjct: 907 EKSTVAHGALNAVAMSSESSAHSAPQVCA 935



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 116/188 (61%), Gaps = 2/188 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +IA++G+RNS  +A  PTA+ + I+G +   EP   N++ +  LSGEF VVN 
Sbjct: 740 DWEALRRRIARYGMRNSNCVAIAPTATISNIVGVSACIEPTYQNLFVKSNLSGEFTVVNE 799

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M   L   +G +  I+ +P  L+DLY T +EI  K +++ AA R 
Sbjct: 800 YLVRDLKARDLWDAVMIADLKYFDGMLARIDRVPADLRDLYATAFEIDPKWLVEAAARRQ 859

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM-A 961
            +IDQSQSLNIYMA  +  K+  ++   W+ GLKT  YYLRT  A +  + T+    + A
Sbjct: 860 KWIDQSQSLNIYMAGASGKKLDEIYRLAWRRGLKT-TYYLRTMAATHIEKSTVAHGALNA 918

Query: 962 NAMASKDT 969
            AM+S+ +
Sbjct: 919 VAMSSESS 926



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 53/83 (63%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  RA D+    WIPD FM+RV +DAQW+L  
Sbjct: 433 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRAHDMNTANWIPDLFMKRVLADAQWTLFS 492

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L + +G  F+  Y  YE
Sbjct: 493 PSDCPDLHEKYGADFEAAYLDYE 515



 Score = 44.7 bits (104), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R+P+    +     +  E + Y A  AS E+A   G Y +Y+GS  S
Sbjct: 652 LGIMGFQDCLHALRIPYASEVAVEFADRSMEAVCYYAYWASTELAQERGRYSSYDGSLWS 711

Query: 653 QGILQYDMWG-----------VTPTDLWDWAALKVLALVYGLK 684
           +GIL  D              V  +   DW AL+     YG++
Sbjct: 712 RGILPQDTLALLAQARGGHVEVDESGTLDWEALRRRIARYGMR 754


>gi|423094017|ref|ZP_17081813.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens Q2-87]
 gi|397885156|gb|EJL01639.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           fluorescens Q2-87]
          Length = 963

 Score =  362 bits (930), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 291/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + V A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIT--DGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPTD 376
              +  E + Y A++ASC++A   G Y+T++GS  S+G+L  D   +            D
Sbjct: 684 FADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGVLPLDSQQILIAQRGQKYIDVD 743

Query: 377 L---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
           L    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 926 AVSSGGNHGDDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.2 bits (108), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 720 KGVLPLD 726



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+  +V    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKLFKVVQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|388543424|ref|ZP_10146715.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           M47T1]
 gi|388278736|gb|EIK98307.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           M47T1]
          Length = 959

 Score =  362 bits (930), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PNEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      + +  + +  
Sbjct: 624 ERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIAYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPTD 376
              +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            D
Sbjct: 684 FADKSMEAVSYFAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 743

Query: 377 L---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
           L    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LKDLY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D  G+ F++ Y+ YEA
Sbjct: 506 PNEVPDLHDLTGKAFEERYEYYEA 529



 Score = 43.1 bits (100), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIAYGSDAAVEFADKSMEAVSYFAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.6 bits (96), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +KV   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|126664353|ref|ZP_01735337.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
 gi|126630679|gb|EBA01293.1| Ribonucleotide reductase, alpha subunit [Marinobacter sp. ELB17]
          Length = 929

 Score =  362 bits (930), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 194/473 (41%), Positives = 277/473 (58%), Gaps = 20/473 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 434 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFS 493

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA---EGK--FIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G  F + Y+ YEA   EGK    + +PA++LW  +L    ETG P++ +
Sbjct: 494 PNDAPDLHDLYGNAFRERYQHYEALAAEGKIELFKTIPAKQLWRKMLTVLFETGHPWITF 553

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  +IN  +   +  +L
Sbjct: 554 KDPCNLRSPQQHKGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAAHINNGE--LDVKRL 611

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+NFY V +ARNSN++HRP+G+G+ G  D    +RL +   ++  
Sbjct: 612 ERTVDTAVRMLDNVIDINFYAVPQARNSNLKHRPVGLGLMGFQDALYALRLSYTSPQAVE 671

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
                 E + Y A+ AS  +AA  G Y++YEGS  SQ IL  D               V 
Sbjct: 672 FADVAMEQLSYFAIRASARLAAERGAYESYEGSLWSQKILPIDSIERLKAARLEGDLSVN 731

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DWA +++ IAKHG+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF
Sbjct: 732 TDSRLDWAPVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEF 791

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN  L+RDL   GLWD+ M + L   +GS+Q IE IP +LK  Y T +EI  + +++ 
Sbjct: 792 TVVNPSLVRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEA 851

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           A+ R  ++DQ QSLN+YMA+ +  K+  ++   W+ GLKT  YYLR+  A  A
Sbjct: 852 ASRRQKWLDQGQSLNLYMAQPSGKKLDELYQLAWERGLKT-TYYLRSLGATGA 903



 Score =  142 bits (359), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 111/168 (66%), Gaps = 1/168 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA +++ IAKHG+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF VVN 
Sbjct: 737 DWAPVRDLIAKHGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 796

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWD+ M + L   +GS+Q IE IP +LK  Y T +EI  + +++ A+ R 
Sbjct: 797 SLVRDLKAEGLWDNVMVNDLKYYDGSVQQIERIPTELKSRYATAFEIDARWLVEAASRRQ 856

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
            ++DQ QSLN+YMA+ +  K+  ++   W+ GLKT  YYLR+  A  A
Sbjct: 857 KWLDQGQSLNLYMAQPSGKKLDELYQLAWERGLKT-TYYLRSLGATGA 903



 Score = 83.2 bits (204), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 48/84 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 434 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMRQDRDWTLFS 493

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G  F + Y+ YEA
Sbjct: 494 PNDAPDLHDLYGNAFRERYQHYEA 517



 Score = 44.3 bits (103), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +RL +   ++        E + Y A+ AS  +AA  G Y++YEGS  S
Sbjct: 648 LGLMGFQDALYALRLSYTSPQAVEFADVAMEQLSYFAIRASARLAAERGAYESYEGSLWS 707

Query: 653 QGILQYDM------------WGVTPTDLWDWAALKVLALVYGLK 684
           Q IL  D               V      DWA ++ L   +G++
Sbjct: 708 QKILPIDSIERLKAARLEGDLSVNTDSRLDWAPVRDLIAKHGMR 751


>gi|28868877|ref|NP_791496.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|422658140|ref|ZP_16720576.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M302278]
 gi|28852116|gb|AAO55191.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331016766|gb|EGH96822.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. lachrymans str. M302278]
          Length = 970

 Score =  362 bits (930), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
                  E + Y A++ASC++A   G Y+T++GS  SQGIL  D   +            
Sbjct: 683 QFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDV 742

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 47.8 bits (112), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPLD 726


>gi|312962585|ref|ZP_07777075.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
 gi|311283165|gb|EFQ61756.1| ribonucleoside-diphosphate reductase [Pseudomonas fluorescens WH6]
          Length = 963

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/524 (38%), Positives = 299/524 (57%), Gaps = 24/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG------KFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA        K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALAQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             K+ NA++S +      + A    A     C  D + DC   Q
Sbjct: 922 TGKL-NAVSSGNHGDDSVLAAPAGPAPVPKACAID-EPDCEACQ 963



 Score =  145 bits (367), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMAS 966
           A++S
Sbjct: 927 AVSS 930



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|359781507|ref|ZP_09284731.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           psychrotolerans L19]
 gi|359370571|gb|EHK71138.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           psychrotolerans L19]
          Length = 971

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 287/489 (58%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 444 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGNWTLFS 503

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P     L D +G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 504 PADVPDLHDLYGKAFEERYEYYEALTEYGKLKLHKTIKAKDLWRKMLSMLFETGHPWLTF 563

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL S+ L  +I   D   +  K+
Sbjct: 564 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSVNLVNHI--VDGKLDTAKV 621

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               K   + L+ +ID+N+Y V +A NSN++HRP+G+G+ G  D      + +  + +  
Sbjct: 622 ARTVKTAVRMLDNVIDINYYSVPQAENSNLKHRPVGMGIMGFQDALYLQHIAYGSDAAVQ 681

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
                 E I Y A++ASC++A   G Y +++GS  SQGIL  D               V 
Sbjct: 682 FADTSMEVISYYAIQASCDLAEERGSYSSFQGSLWSQGILPIDSEKRLIEERGAKYIEVD 741

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            ++  DWA L+E+ AK G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 742 LSETLDWAPLRER-AKKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 800

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K +++ 
Sbjct: 801 TVINPYLVRDLKARGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVEA 860

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 861 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINT 919

Query: 554 TKMANAMAS 562
            K+ NA+++
Sbjct: 920 GKL-NAVSA 927



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/188 (44%), Positives = 121/188 (64%), Gaps = 3/188 (1%)

Query: 779 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 838
           ++  DWA L+E+ AK G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF 
Sbjct: 743 SETLDWAPLRER-AKKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFT 801

Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
           V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ LKDLY T +E+  K +++ A
Sbjct: 802 VINPYLVRDLKARGLWDSVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVETKWIVEAA 861

Query: 899 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
           + R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  
Sbjct: 862 SRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSTEKSTINTG 920

Query: 959 KMANAMAS 966
           K+ NA+++
Sbjct: 921 KL-NAVSA 927



 Score = 86.3 bits (212), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 444 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGNWTLFS 503

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P     L D +G+ F++ Y+ YEA
Sbjct: 504 PADVPDLHDLYGKAFEERYEYYEA 527



 Score = 43.1 bits (100), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  + +        E I Y A++ASC++A   G Y +++GS  S
Sbjct: 658 MGIMGFQDALYLQHIAYGSDAAVQFADTSMEVISYYAIQASCDLAEERGSYSSFQGSLWS 717

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 718 QGILPID 724



 Score = 40.8 bits (94), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  LK+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 528 LTEYGKLKLHKTIKAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 580


>gi|213969510|ref|ZP_03397646.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
 gi|301385966|ref|ZP_07234384.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato Max13]
 gi|302058709|ref|ZP_07250250.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato K40]
 gi|302134400|ref|ZP_07260390.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213925606|gb|EEB59165.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           syringae pv. tomato T1]
          Length = 970

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTIDVAVRMLDNVIDINYYSVPQARNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
                  E + Y A++ASC++A   G Y+T++GS  SQGIL  D   +            
Sbjct: 683 QFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDV 742

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 47.8 bits (112), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPLD 726


>gi|92112800|ref|YP_572728.1| ribonucleotide-diphosphate reductase subunit alpha
           [Chromohalobacter salexigens DSM 3043]
 gi|91795890|gb|ABE58029.1| Ribonucleoside-diphosphate reductase [Chromohalobacter salexigens
           DSM 3043]
          Length = 976

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/483 (39%), Positives = 282/483 (58%), Gaps = 20/483 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+    W+PD FM+RV  D +W+L  
Sbjct: 432 RKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDEEWTLFS 491

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D +G  F+  Y +YE      + K  ++V A+ LW  +L    ETG P++ +
Sbjct: 492 PSTCPDLHDLYGAAFEKRYAEYEEMTRNGQLKLFKRVKAKDLWRKMLSMLFETGHPWITF 551

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q + G +  SNLCTEI   TS DE+AVCNL S+ L  +I   D   +  KL
Sbjct: 552 KDPCNLRSPQNHAGVVHSSNLCTEITLNTSADEIAVCNLGSVNLAQHI--VDGQLDGDKL 609

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K   K   + L+ +ID+N+Y V +ARNSN +HRP+G+G+ G  D   Q+ + +  +++  
Sbjct: 610 KKTVKTAVRMLDNVIDINYYAVPQARNSNFKHRPVGLGLMGFQDALYQLGIAYASDDAVT 669

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
                 E I Y A+EAS ++A   G YQ++EGS  S+G+L  D               V 
Sbjct: 670 FADTSMELISYHAIEASSDLATERGRYQSFEGSLWSKGVLPIDSIAKLAEERGADYIEVD 729

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DWA L++K+ + G+RNS ++A  PTA+ + I G  +S EP   N++ +  LSGEF
Sbjct: 730 TSTTQDWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLFVKSNLSGEF 789

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +++ DL   GLWD+ M + L   +GS+Q I+ IP  LK  Y + +E+  K +++ 
Sbjct: 790 TVVNAYMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFEVEPKWLVEA 849

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           AA R  +IDQ+QSLN+Y+A ++  K+   +   W  GLKT  YYLR   A +  + T+D+
Sbjct: 850 AARRQKWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKT-TYYLRALGATSVEKSTVDR 908

Query: 554 TKM 556
            K+
Sbjct: 909 GKL 911



 Score =  138 bits (347), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 112/178 (62%), Gaps = 1/178 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA L++K+ + G+RNS ++A  PTA+ + I G  +S EP   N++ +  LSGEF VVN 
Sbjct: 735 DWARLRDKVTRQGMRNSNVMAIAPTATISNICGVTQSIEPTYQNLFVKSNLSGEFTVVNA 794

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +++ DL   GLWD+ M + L   +GS+Q I+ IP  LK  Y + +E+  K +++ AA R 
Sbjct: 795 YMVNDLKARGLWDEVMINDLKYYDGSVQPIDRIPDDLKARYASAFEVEPKWLVEAAARRQ 854

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQ+QSLN+Y+A ++  K+   +   W  GLKT  YYLR   A +  + T+D+ K+
Sbjct: 855 KWIDQAQSLNLYIAGVSGKKLDVTYRMAWFRGLKT-TYYLRALGATSVEKSTVDRGKL 911



 Score = 87.8 bits (216), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+ +FLEL+KNTG +  R  D+    W+PD FM+RV  D +W+L  
Sbjct: 432 RKGAVCAYLETWHLDVEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDEEWTLFS 491

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L D +G  F+  Y +YE
Sbjct: 492 PSTCPDLHDLYGAAFEKRYAEYE 514



 Score = 45.4 bits (106), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+ + +  +++        E I Y A+EAS ++A   G YQ++EGS  S
Sbjct: 646 LGLMGFQDALYQLGIAYASDDAVTFADTSMELISYHAIEASSDLATERGRYQSFEGSLWS 705

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 706 KGVLPID 712


>gi|284032752|ref|YP_003382683.1| ribonucleoside-diphosphate reductase subunit alpha [Kribbella
           flavida DSM 17836]
 gi|283812045|gb|ADB33884.1| ribonucleoside-diphosphate reductase, alpha subunit [Kribbella
           flavida DSM 17836]
          Length = 806

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 278/480 (57%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH D+  FLEL+KNTG E  R  D+    W+PD F++RVE+DA W+L  
Sbjct: 303 RKGAVCAYLETWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFS 362

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+   GL D +G  F   Y++YE      E +  R+V A  LW  +L    ETG P++ +
Sbjct: 363 PDEVPGLHDLYGAAFAAAYEQYERAADRGEIRVFRRVRAVDLWRRMLTVLFETGHPWITF 422

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   T+ DE AVCNL S+ L  ++ PA        L
Sbjct: 423 KDACNLRSPQQHDGVVHSSNLCTEITLNTTVDETAVCNLGSVNLVAHLTPAGLDAGL--L 480

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +D  +   + L+ +IDVNFY   E+  +N RHRP+G+G+ G AD    +R+P+  + +  
Sbjct: 481 RDTVRTAVRMLDNVIDVNFYTTPESERANQRHRPVGLGLMGFADALFALRVPYASDAAVA 540

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM-----------WGVTP 374
                 E + Y A+EAS ++AA  G Y+TY+GS  SQGIL  D              V  
Sbjct: 541 FADTSMEQLSYHAIEASSDLAAERGTYRTYDGSLWSQGILPIDSVELLREARGGDLDVDT 600

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL+ K+ + G+RNS ++A  PTA+ + I G ++S EP  SN++ +  +SGEF 
Sbjct: 601 STTLDWDALRAKVRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFT 660

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           V N +L+ DL   GLWD  M D L  ++G +  IE IP  L+ LY T +EI    ++  A
Sbjct: 661 VANPYLVADLKARGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAA 720

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQSQSLN+Y++E +   +  ++   W+ GLKT  YYLR++ A +  + T+  T
Sbjct: 721 SRRQKWIDQSQSLNLYVSEPSGKALDELYRSAWRHGLKT-TYYLRSQSATHVEKSTLRGT 779



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/176 (40%), Positives = 109/176 (61%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ K+ + G+RNS ++A  PTA+ + I G ++S EP  SN++ +  +SGEF V N 
Sbjct: 605 DWDALRAKVRRDGMRNSNVLAIAPTATISNICGVSQSIEPTYSNLFVKSNMSGEFTVANP 664

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL   GLWD  M D L  ++G +  IE IP  L+ LY T +EI    ++  A+ R 
Sbjct: 665 YLVADLKARGLWDQRMVDDLKYHDGVLNRIERIPADLRTLYATAFEIDPAWLVAAASRRQ 724

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQSQSLN+Y++E +   +  ++   W+ GLKT  YYLR++ A +  + T+  T
Sbjct: 725 KWIDQSQSLNLYVSEPSGKALDELYRSAWRHGLKT-TYYLRSQSATHVEKSTLRGT 779



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH D+  FLEL+KNTG E  R  D+    W+PD F++RVE+DA W+L  
Sbjct: 303 RKGAVCAYLETWHVDVEQFLELRKNTGDERRRTHDMNTANWVPDLFLQRVEADAGWTLFS 362

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+   GL D +G  F   Y++YE
Sbjct: 363 PDEVPGLHDLYGAAFAAAYEQYE 385



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 39/67 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G AD    +R+P+  + +        E + Y A+EAS ++AA  G Y+TY+GS  S
Sbjct: 517 LGLMGFADALFALRVPYASDAAVAFADTSMEQLSYHAIEASSDLAAERGTYRTYDGSLWS 576

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 577 QGILPID 583


>gi|53804298|ref|YP_114078.1| ribonucleotide-diphosphate reductase subunit alpha [Methylococcus
           capsulatus str. Bath]
 gi|53758059|gb|AAU92350.1| ribonucleoside-diphosphate reductase, alpha subunit [Methylococcus
           capsulatus str. Bath]
          Length = 969

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 189/476 (39%), Positives = 284/476 (59%), Gaps = 18/476 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RV  + +W+L  
Sbjct: 446 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D  G+ F+  Y++YEA     E K  +++PA +LW  +L    ETG P++ +
Sbjct: 506 PNDTPDLHDLTGQSFERRYQEYEAKADRGEIKLYKRLPAVQLWRKMLSMLFETGHPWLAF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +   Q+ G +  SNLCTEI  +T+ +E+AVCNL S+ L  +I P D   +  KL
Sbjct: 566 KDPCNLRYTNQHAGVVHSSNLCTEITLHTNDNEIAVCNLGSVNLAAHITP-DGALDTEKL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +AR SN+RHRP+G+G+ G  D   ++RLP+   E+  
Sbjct: 625 QRTIATGMRMLDNVIDINYYSVPQARRSNLRHRPVGLGIMGFQDALYKLRLPYASQEAVA 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
                 E + Y A++ASC++AA  G Y +++GS  S+GIL  D   +             
Sbjct: 685 FADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWSRGILPIDSIALLEEGRGGYLQMDR 744

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW AL+E++   G+RNS  +A  PTA+ + I G ++S EP   N++ +  LSGEF 
Sbjct: 745 SQTLDWNALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFT 804

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN +L+RDL  LGLWD  M + L   +GS+Q IE IP+ LK LY T +EI  + +++  
Sbjct: 805 VVNPYLVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAG 864

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + R  ++DQ+QSLN+Y+AE +  K+ +++   W  GLKT  YYLR+  A +  + T
Sbjct: 865 SRRQKWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKT-TYYLRSLGATHVEKST 919



 Score =  139 bits (351), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/172 (43%), Positives = 111/172 (64%), Gaps = 1/172 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+E++   G+RNS  +A  PTA+ + I G ++S EP   N++ +  LSGEF VVN 
Sbjct: 749 DWNALRERVRTVGMRNSNTMAIAPTATISNICGVSQSIEPTYQNLFVKSNLSGEFTVVNP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL  LGLWD  M + L   +GS+Q IE IP+ LK LY T +EI  + +++  + R 
Sbjct: 809 YLVRDLKTLGLWDAVMINDLKYYDGSVQKIERIPETLKQLYATAFEIDARWLIEAGSRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
            ++DQ+QSLN+Y+AE +  K+ +++   W  GLKT  YYLR+  A +  + T
Sbjct: 869 KWLDQAQSLNLYLAEPSGKKLDTLYKLAWVRGLKT-TYYLRSLGATHVEKST 919



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RV  + +W+L  
Sbjct: 446 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMKRVAEEREWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           PN    L D  G+ F+  Y++YEA+ 
Sbjct: 506 PNDTPDLHDLTGQSFERRYQEYEAKA 531



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 39/67 (58%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   ++RLP+   E+        E + Y A++ASC++AA  G Y +++GS  S
Sbjct: 661 LGIMGFQDALYKLRLPYASQEAVAFADLSMEAVSYYAIQASCDLAAERGRYSSFDGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 RGILPID 727


>gi|389682273|ref|ZP_10173616.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           chlororaphis O6]
 gi|388554147|gb|EIM17397.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           chlororaphis O6]
          Length = 963

 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 195/489 (39%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVE 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 926 AVSSGGNHGDDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.1 bits (105), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.2 bits (95), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|302184854|ref|ZP_07261527.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. syringae 642]
          Length = 970

 Score =  362 bits (929), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|440738426|ref|ZP_20917959.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens BRIP34879]
 gi|447917930|ref|YP_007398498.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           poae RE*1-1-14]
 gi|440381098|gb|ELQ17642.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens BRIP34879]
 gi|445201793|gb|AGE27002.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           poae RE*1-1-14]
          Length = 964

 Score =  362 bits (929), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 301/524 (57%), Gaps = 24/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALSQYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 566

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 567 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 624

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 625 LERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 684

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 685 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 744

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 745 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 803

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 804 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 863

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 864 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 922

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             K+ NA++S +      + A    A     C  D + DC   Q
Sbjct: 923 TGKL-NAVSSGNHGDDSVLAAPAGPAPVPKACAID-EPDCEACQ 964



 Score =  145 bits (367), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 927

Query: 963 AMAS 966
           A++S
Sbjct: 928 AVSS 931



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGQWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 46.6 bits (109), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 662 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 721

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 722 KGILPLD 728


>gi|254444373|ref|ZP_05057849.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
 gi|198258681|gb|EDY82989.1| ribonucleoside-diphosphate reductase, alpha subunit, putative
            [Verrucomicrobiae bacterium DG1235]
          Length = 1062

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 191/497 (38%), Positives = 291/497 (58%), Gaps = 18/497 (3%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R G+   YLE WH D++DFLEL+KNTG +  R  D+    W+PD FM+R+E+   WS   
Sbjct: 563  RRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQMWSFFR 622

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEAEGK----FIRQVPARKLWFAILDSQIETGTPYMLYK 206
             +    L DS+G  F+  Y +YEA+      + ++VPA ++W  +L    ETG P++ +K
Sbjct: 623  TSEVPDLHDSYGADFEKKYTEYEAKAAKGEIWSKEVPAIEVWKRMLSMIFETGHPWITFK 682

Query: 207  DACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLK 266
            D CN +S Q + G +  SNLCTEI   TSK+E AVCNL SI L+ +++  D   +  KL+
Sbjct: 683  DPCNVRSPQDHCGVVHSSNLCTEITLNTSKEETAVCNLGSIVLDQHLDK-DGNIDHDKLR 741

Query: 267  DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
            +  +   + L+ +ID+NFYP E A+ +N RHRPIG+G+ GL +       PF   E+   
Sbjct: 742  ETVQTAIRALDNVIDINFYPTEAAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQEAVEF 801

Query: 327  NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL--------- 377
            N +I E + Y A+EAS ++AA  G Y++Y+GS   +G+L  D   +   +          
Sbjct: 802  NDEIMEAVAYYAIEASSDLAAERGTYKSYKGSKWDRGLLPQDTVDLLEKERGVEVDVPRG 861

Query: 378  --WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
               DW  ++EK+ KHG+RNS ++A  PTA+ + I G +   EP   N++ +  LSGEF +
Sbjct: 862  GKLDWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLSGEFII 921

Query: 436  VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
            +N HL+RDL   GLW+  M+D L   +G +++I+ IP  LK  YKT + +    ++  AA
Sbjct: 922  LNQHLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWLVLAAA 981

Query: 496  DRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID-KT 554
             R  +IDQSQS+N+++A  +   +S M+   WK GLKT  YYLRT  A+N  + T+  K 
Sbjct: 982  RRQKWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKT-TYYLRTLGASNIEKATVGAKK 1040

Query: 555  KMANAMASKDARSQEEI 571
            ++   +  K A  + E+
Sbjct: 1041 ELRGIVGGKAAPPEPEV 1057



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 1/177 (0%)

Query: 783  DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            DW  ++EK+ KHG+RNS ++A  PTA+ + I G +   EP   N++ +  LSGEF ++N 
Sbjct: 865  DWTPIREKVTKHGMRNSNVMAIAPTATISNITGTSPCIEPGYKNLFVKSNLSGEFIILNQ 924

Query: 843  HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            HL+RDL   GLW+  M+D L   +G +++I+ IP  LK  YKT + +    ++  AA R 
Sbjct: 925  HLVRDLKARGLWNAEMRDNLKYFDGELEEIDSIPADLKAKYKTAFSVDYSWLVLAAARRQ 984

Query: 903  AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
             +IDQSQS+N+++A  +   +S M+   WK GLKT  YYLRT  A+N  + T+   K
Sbjct: 985  KWIDQSQSVNLFLASPDMKTLSHMYRAAWKHGLKT-TYYLRTLGASNIEKATVGAKK 1040



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 52/86 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R G+   YLE WH D++DFLEL+KNTG +  R  D+    W+PD FM+R+E+   WS   
Sbjct: 563 RRGSGCAYLETWHNDLYDFLELRKNTGDDRRRCHDMNTANWVPDLFMKRMEARQMWSFFR 622

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
            +    L DS+G  F+  Y +YEA+ 
Sbjct: 623 TSEVPDLHDSYGADFEKKYTEYEAKA 648



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 43/80 (53%)

Query: 580 AAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR 639
           AA +    ++   +G+ GL +       PF   E+   N +I E + Y A+EAS ++AA 
Sbjct: 764 AAKLANSRHRPIGLGIMGLQNCLYLRDTPFASQEAVEFNDEIMEAVAYYAIEASSDLAAE 823

Query: 640 DGPYQTYEGSPVSQGILQYD 659
            G Y++Y+GS   +G+L  D
Sbjct: 824 RGTYKSYKGSKWDRGLLPQD 843


>gi|422667871|ref|ZP_16727731.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aptata str. DSM 50252]
 gi|330980157|gb|EGH78343.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 971

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 926

Query: 963 AMAS 966
           A++S
Sbjct: 927 AVSS 930



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFQERYEYYEA 529



 Score = 46.2 bits (108), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727



 Score = 39.7 bits (91), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 498 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 554

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 555 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 583


>gi|160872690|ref|ZP_02062822.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
 gi|159121489|gb|EDP46827.1| ribonucleoside-diphosphate reductase alpha subunit (Ribonucleotide
           reductase) [Rickettsiella grylli]
          Length = 946

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/482 (40%), Positives = 283/482 (58%), Gaps = 19/482 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PD FM+R+     W+L  
Sbjct: 444 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFS 503

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D++G  F++ Y+ YEA     E K  + +PA  LW  +L    ETG P++ +
Sbjct: 504 PDETPDLHDAFGSAFEEKYQAYEAKALRGEIKNFKTIPAATLWRKMLSLLFETGHPWITF 563

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++GTI  SNLCTEI   TS DE+AVCNL SI L  ++  + +    TKL
Sbjct: 564 KDPCNLRSPQQHVGTIHSSNLCTEITLNTSIDEIAVCNLGSINLPQHLTESGEIEK-TKL 622

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +AR SN++HRPIG+G+ G  D   Q+RLP+  + +  
Sbjct: 623 RQTIRTAIRMLDNVIDINYYTVPQARRSNLKHRPIGLGLMGFQDALYQLRLPYASDAAIT 682

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
              Q  E I Y A+EAS ++A   G Y+++ GS  SQG+L  D                 
Sbjct: 683 FADQTMELISYYAIEASSDLAHERGAYESFPGSLWSQGVLPLDSIARLQKARGEFLDQDR 742

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T   DW  L++K+  HG+R+S  +A  PTA+ + I G ++S EP   N++ +  +SGEF 
Sbjct: 743 TARLDWDTLRKKVM-HGMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFT 801

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           ++N +L+ DL  LGLWD  M + L   +GS+Q IE IP  LK LY T +EIP   +++  
Sbjct: 802 MINPYLINDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAG 861

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           + R  +IDQSQSLN+YMA  +  K+  ++   W  GLKT  YYLRT  A +  + T+ K+
Sbjct: 862 SRRQKWIDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTS-YYLRTMGATHTEKATLAKS 920

Query: 555 KM 556
            +
Sbjct: 921 HL 922



 Score =  135 bits (341), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 2/178 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L++K+  HG+R+S  +A  PTA+ + I G ++S EP   N++ +  +SGEF ++N 
Sbjct: 747 DWDTLRKKVM-HGMRHSNCMAIAPTATISNICGVSQSIEPTYQNLFVKSNMSGEFTMINP 805

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL  LGLWD  M + L   +GS+Q IE IP  LK LY T +EIP   +++  + R 
Sbjct: 806 YLINDLKLLGLWDAVMLNDLKYYDGSLQKIERIPDHLKQLYATAFEIPAHWLVEAGSRRQ 865

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
            +IDQSQSLN+YMA  +  K+  ++   W  GLKT  YYLRT  A +  + T+ K+ +
Sbjct: 866 KWIDQSQSLNLYMAHASGKKLDELYKQVWLKGLKTS-YYLRTMGATHTEKATLAKSHL 922



 Score = 86.3 bits (212), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 53/87 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    W+PD FM+R+     W+L  
Sbjct: 444 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWVPDLFMKRLMKGENWTLFS 503

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEGL 87
           P+    L D++G  F++ Y+ YEA+ L
Sbjct: 504 PDETPDLHDAFGSAFEEKYQAYEAKAL 530



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   Q+RLP+  + +     Q  E I Y A+EAS ++A   G Y+++ GS  S
Sbjct: 659 LGLMGFQDALYQLRLPYASDAAITFADQTMELISYYAIEASSDLAHERGAYESFPGSLWS 718

Query: 653 QGILQYD 659
           QG+L  D
Sbjct: 719 QGVLPLD 725


>gi|399005090|ref|ZP_10707688.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM17]
 gi|398127520|gb|EJM16928.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM17]
          Length = 963

 Score =  362 bits (929), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/489 (39%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVD 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIESRGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  146 bits (369), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 926 AVSSGGNHGDDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 45.1 bits (105), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVDFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.2 bits (95), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|75677069|ref|YP_319490.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter
           winogradskyi Nb-255]
 gi|74421939|gb|ABA06138.1| ribonucleotide reductase large subunit [Nitrobacter winogradskyi
           Nb-255]
          Length = 969

 Score =  362 bits (928), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/480 (40%), Positives = 277/480 (57%), Gaps = 19/480 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D  W+L  
Sbjct: 450 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGMWTLFS 509

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F   Y  YE      E +  +QV A  LW  +L    ETG P++ +
Sbjct: 510 PDETPDLHDLTGKAFAGRYAYYEEKAARGELRVTKQVRAVDLWRRMLTMLFETGHPWITF 569

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS  EVAVCNL S+ L  +I   D   +   L
Sbjct: 570 KDPCNLRSPQQHCGVVHSSNLCTEITLNTSNTEVAVCNLGSVNLVNHIK--DGKLDHEHL 627

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
               +I  + L+ ++DVNFY + EAR SN+RHRP+G+G+ G  D    +RLP+  +E+  
Sbjct: 628 ARTVRIAMRMLDNVLDVNFYTIPEARTSNLRHRPVGLGIMGFQDALNILRLPYASDEAVS 687

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----------GVTP 374
              +  E I Y A+  S E+AA  G Y +Y+GS  S+G+L  D              +  
Sbjct: 688 FADESMEAIAYHAISGSVELAAERGRYPSYQGSLWSKGVLPLDSLELVDEARGAEVDIDR 747

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           +   DW +L++++   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  +SG+F 
Sbjct: 748 SSRLDWDSLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFT 807

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
           VVN HL+RDL   GLWD+ M   L   +GS+ +I+ +P  LK LY T +EI    ++D A
Sbjct: 808 VVNAHLVRDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATAFEIDSAWLIDAA 867

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y+A  +  K+ +++ H WK GLKT  YYLR++ A +  + T+  T
Sbjct: 868 ARRQKWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEKSTLKGT 926



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/176 (42%), Positives = 113/176 (64%), Gaps = 1/176 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L++++   G+RNS  +A  PTA+ + I G ++S EP   N+Y +  +SG+F VVN 
Sbjct: 752 DWDSLRQRVMTIGMRNSNCMAIAPTATISNICGVSQSIEPAYQNLYVKSNMSGDFTVVNA 811

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+RDL   GLWD+ M   L   +GS+ +I+ +P  LK LY T +EI    ++D AA R 
Sbjct: 812 HLVRDLKARGLWDEVMISDLKYFDGSVGEIDRVPDDLKALYATAFEIDSAWLIDAAARRQ 871

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
            +IDQ+QSLN+Y+A  +  K+ +++ H WK GLKT  YYLR++ A +  + T+  T
Sbjct: 872 KWIDQAQSLNLYIANPSGKKLDALYRHAWKRGLKT-TYYLRSRSATHVEKSTLKGT 926



 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 48/83 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D  W+L  
Sbjct: 450 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEEDGMWTLFS 509

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+    L D  G+ F   Y  YE
Sbjct: 510 PDETPDLHDLTGKAFAGRYAYYE 532



 Score = 49.7 bits (117), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +RLP+  +E+     +  E I Y A+  S E+AA  G Y +Y+GS  S
Sbjct: 664 LGIMGFQDALNILRLPYASDEAVSFADESMEAIAYHAISGSVELAAERGRYPSYQGSLWS 723

Query: 653 QGILQYD 659
           +G+L  D
Sbjct: 724 KGVLPLD 730


>gi|358449491|ref|ZP_09159975.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           manganoxydans MnI7-9]
 gi|357226246|gb|EHJ04727.1| ribonucleotide-diphosphate reductase subunit alpha [Marinobacter
           manganoxydans MnI7-9]
          Length = 921

 Score =  362 bits (928), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/473 (40%), Positives = 280/473 (59%), Gaps = 20/473 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 427 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFS 486

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA---EGK--FIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YEA   +GK    R++PA++LW  +L    ETG P++ +
Sbjct: 487 PSDASDLHDLYGNAFRERYEYYEALAEQGKINLFRKIPAKQLWRKMLTVLFETGHPWITF 546

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS +E+AVCNL S+ L  +I  A+   +  +L
Sbjct: 547 KDPCNLRSPQQHRGVVHSSNLCTEITLNTSAEEIAVCNLGSVNLAAHI--ANGELDVQRL 604

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +ARNSN+RHRP+G+G  G  D   Q+ LP+  +E+  
Sbjct: 605 EQTVNTAVRMLDNVIDINYYAVPQARNSNLRHRPVGLGFMGFQDALYQLGLPYSSSEAIE 664

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
                 E + Y A+ AS  +A   G Y++YEGS   QGIL  D               V 
Sbjct: 665 FADLAMEQLSYFAIRASASLAGERGAYESYEGSLWQQGILPIDSINLLKENRREGDLSVN 724

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
                DW+ ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF
Sbjct: 725 TNARLDWSPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEF 784

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN  L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ 
Sbjct: 785 TVVNPSLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATAFEIDARWLVEA 844

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
           AA R  ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 845 AARRQKWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 896



 Score =  141 bits (356), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 113/168 (67%), Gaps = 1/168 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW+ ++E IAK+G+RNS ++A  PTA+ + I+G ++S EP   N++ +  LSGEF VVN 
Sbjct: 730 DWSPVRELIAKNGMRNSNVMAIAPTATISNIVGVSQSIEPAYQNLFVKSNLSGEFTVVNP 789

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWD+ M + L   +GS+Q I+ IP +LK  Y T +EI  + +++ AA R 
Sbjct: 790 SLVRDLKAEGLWDNVMVNDLKYFDGSVQQIDRIPNELKARYATAFEIDARWLVEAAARRQ 849

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
            ++DQ+QSLN+YMAE +  K+ +++   W+ GLKT  YYLR+  A  A
Sbjct: 850 KWLDQAQSLNLYMAEPSGKKLDALYQLAWERGLKT-TYYLRSLGATGA 896



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 48/84 (57%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD  + R+  D  W+L  
Sbjct: 427 RKGAVCAYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLLIERMREDRDWTLFS 486

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D +G  F + Y+ YEA
Sbjct: 487 PSDASDLHDLYGNAFRERYEYYEA 510



 Score = 47.0 bits (110), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G  G  D   Q+ LP+  +E+        E + Y A+ AS  +A   G Y++YEGS   
Sbjct: 641 LGFMGFQDALYQLGLPYSSSEAIEFADLAMEQLSYFAIRASASLAGERGAYESYEGSLWQ 700

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 701 QGILPID 707


>gi|422676691|ref|ZP_16736014.1| ribonucleotide-diphosphate reductase subunit alpha, partial
           [Pseudomonas syringae pv. aceris str. M302273]
 gi|330974388|gb|EGH74454.1| ribonucleotide-diphosphate reductase subunit alpha, partial
           [Pseudomonas syringae pv. aceris str. M302273]
          Length = 953

 Score =  362 bits (928), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYISV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|88705572|ref|ZP_01103282.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
 gi|88700085|gb|EAQ97194.1| ribonucleoside-diphosphate reductase, alpha subunit [Congregibacter
           litoralis KT71]
          Length = 969

 Score =  362 bits (928), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 284/490 (57%), Gaps = 21/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 461 RKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFS 520

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +G+ F++ Y  YEA     E K+ + V A+ LW  +L    ETG P+M +
Sbjct: 521 PNDVPDLHDLYGKAFEERYCAYEAMAATGELKYSKTVKAQNLWRKMLGMLFETGHPWMTF 580

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ+ G +  SNLCTEI   TS DE+AVCNL SI L  +++  +   N  KL
Sbjct: 581 KDPCNLRSPQQHAGVVHSSNLCTEITLNTSADEIAVCNLGSINLPQHVD--ENGLNLEKL 638

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
            +  +   + L+ +ID+N+Y V+ ARNSN RHRP+G+G+ G  D   +  + +   ++  
Sbjct: 639 AETVRTAVRMLDNVIDINYYSVDTARNSNFRHRPVGLGLMGFQDALYKQHIAYGSEDAVT 698

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
              +  E I Y A++AS ++A   G Y++YEGS  SQGIL  D  G            V 
Sbjct: 699 FADRSMEAISYYAIDASSKLAEERGAYESYEGSLWSQGILPIDSLGKLVEERGSDYIKVD 758

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW +L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 759 DSMTMDWTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 818

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN +L+ DL   GLWD  M + L   +GS+Q IE IP  L+ +Y   +E+  + +++ 
Sbjct: 819 TVVNPYLVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAFEVEPRWIVEC 878

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + TID 
Sbjct: 879 ASRRQKWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKT-TYYLRSLAATGTEKSTIDT 937

Query: 554 TKMANAMASK 563
            ++ NA++S+
Sbjct: 938 GQL-NAVSSE 946



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 113/185 (61%), Gaps = 2/185 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW +L+E +   G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF VVN 
Sbjct: 764 DWTSLREAVKARGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVVNP 823

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+ DL   GLWD  M + L   +GS+Q IE IP  L+ +Y   +E+  + +++ A+ R 
Sbjct: 824 YLVNDLKVRGLWDSVMVNDLKYYDGSVQAIERIPADLRAIYSNAFEVEPRWIVECASRRQ 883

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+   +  K+   +   W  GLKT  YYLR+  A    + TID  ++ N
Sbjct: 884 KWIDQAQSLNLYINNASGKKLDITYRMAWYSGLKT-TYYLRSLAATGTEKSTIDTGQL-N 941

Query: 963 AMASK 967
           A++S+
Sbjct: 942 AVSSE 946



 Score = 87.0 bits (214), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 461 RKGAVCSYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGDWTLFS 520

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           PN    L D +G+ F++ Y  YEA
Sbjct: 521 PNDVPDLHDLYGKAFEERYCAYEA 544



 Score = 45.8 bits (107), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 37/70 (52%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D   +  + +   ++     +  E I Y A++AS ++A   G Y++YEGS  S
Sbjct: 675 LGLMGFQDALYKQHIAYGSEDAVTFADRSMEAISYYAIDASSKLAEERGAYESYEGSLWS 734

Query: 653 QGILQYDMWG 662
           QGIL  D  G
Sbjct: 735 QGILPIDSLG 744


>gi|440745082|ref|ZP_20924380.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP39023]
 gi|440373162|gb|ELQ09930.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae BRIP39023]
          Length = 970

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|425900936|ref|ZP_18877527.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           chlororaphis subsp. aureofaciens 30-84]
 gi|397883426|gb|EJK99912.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           chlororaphis subsp. aureofaciens 30-84]
          Length = 963

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/489 (39%), Positives = 290/489 (59%), Gaps = 22/489 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D  G+ F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTF 565

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  KL
Sbjct: 566 KDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTAKL 623

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + +  
Sbjct: 624 QRTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVD 683

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GVT 373
              +  E + + A++ASC++A   G Y+T++GS  S+GIL  D               V 
Sbjct: 684 FADKSMEAVSFYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIESRGQKYIDVD 743

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 744 LNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 802

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D 
Sbjct: 803 TVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDA 862

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+ 
Sbjct: 863 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINT 921

Query: 554 TKMANAMAS 562
            K+ NA++S
Sbjct: 922 GKL-NAVSS 929



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVETKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 925

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 926 AVSSGGNHGDDSV 938



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + + A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVDFADKSMEAVSFYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 41.2 bits (95), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 30/53 (56%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L ++  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 530 LCEYGKIKLFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|407363232|ref|ZP_11109764.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           mandelii JR-1]
          Length = 964

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 294/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 922 TGKL-NAVSSGGNHGEDSV 939



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 927 AVSSGGNHGEDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|119478321|ref|ZP_01618352.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448661|gb|EAW29906.1| ribonucleotide-diphosphate reductase alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 962

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/490 (39%), Positives = 288/490 (58%), Gaps = 21/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    W+PD FM+RV  D +W+L  
Sbjct: 449 RKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFS 508

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGK-----FIRQVPARKLWFAILDSQIETGTPYMLY 205
           PN    L D +GE F+  Y +YEA+ K       + V A++LW  +L    ETG P++ +
Sbjct: 509 PNDVPDLHDLYGEAFETRYTEYEAQCKSGDMKLFKTVRAQELWRKMLGMLFETGHPWITF 568

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TSK+E+AVCNL S+ L  ++  ++   + +KL
Sbjct: 569 KDPCNIRSPQQHVGVVHSSNLCTEITLNTSKEEIAVCNLGSVNLAQHV--SENGLDLSKL 626

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +       + L+ +ID+N+Y V +A  SNMRHRP+G+G+ G  D      + +  +++  
Sbjct: 627 EKTITTAVRMLDNVIDINYYSVGQAETSNMRHRPVGLGLMGFQDALYNQHMAYGSDQAVE 686

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
              +  E I Y A++AS  +A   G Y T+EGS  SQGIL  D               V 
Sbjct: 687 FADRSMEAISYFAIQASSALAEERGSYSTFEGSLWSQGILPIDSVKTLIAERGNDYIDVD 746

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            +   DW++L+ ++ + G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF
Sbjct: 747 QSQTLDWSSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEF 806

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL++DL   GLWD+ M + L    GS+Q+I+ +P ++K LY T +E+  + ++D 
Sbjct: 807 TVVNPHLVKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEPRWIVDA 866

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
           A+ R  +IDQ+QSLN+Y++  +  K+   +   W  GLKT  YYLR   A    + TID 
Sbjct: 867 ASRRQKWIDQAQSLNLYISGASGKKLDITYRMAWYKGLKT-TYYLRALAATGTEKSTID- 924

Query: 554 TKMANAMASK 563
           T   NA++SK
Sbjct: 925 TGSLNAVSSK 934



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 121/196 (61%), Gaps = 2/196 (1%)

Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
           D   V  +   DW++L+ ++ + G+RNS ++A  PTA+ A I G ++S EP   N+Y + 
Sbjct: 741 DYIDVDQSQTLDWSSLRTRVQQKGMRNSNVMAIAPTATIANITGVSQSIEPTYQNLYVKS 800

Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
            LSGEF VVN HL++DL   GLWD+ M + L    GS+Q+I+ +P ++K LY T +E+  
Sbjct: 801 NLSGEFTVVNPHLVKDLKARGLWDNVMVNDLKYYEGSLQNIDRVPVEVKQLYATAFEVEP 860

Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
           + ++D A+ R  +IDQ+QSLN+Y++  +  K+   +   W  GLKT  YYLR   A    
Sbjct: 861 RWIVDAASRRQKWIDQAQSLNLYISGASGKKLDITYRMAWYKGLKT-TYYLRALAATGTE 919

Query: 952 QFTIDKTKMANAMASK 967
           + TID T   NA++SK
Sbjct: 920 KSTID-TGSLNAVSSK 934



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 53/85 (62%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    W+PD FM+RV  D +W+L  
Sbjct: 449 RKGAVCAYLETWHMDIEEFVELRKNTGDDRRRTHDMNTANWVPDLFMKRVFDDGEWTLFS 508

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           PN    L D +GE F+  Y +YEA+
Sbjct: 509 PNDVPDLHDLYGEAFETRYTEYEAQ 533



 Score = 42.7 bits (99), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      + +  +++     +  E I Y A++AS  +A   G Y T+EGS  S
Sbjct: 663 LGLMGFQDALYNQHMAYGSDQAVEFADRSMEAISYFAIQASSALAEERGSYSTFEGSLWS 722

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 723 QGILPID 729


>gi|291615086|ref|YP_003525243.1| ribonucleoside-diphosphate reductase, subunit alpha [Sideroxydans
           lithotrophicus ES-1]
 gi|291585198|gb|ADE12856.1| ribonucleoside-diphosphate reductase, alpha subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 946

 Score =  361 bits (927), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 293/520 (56%), Gaps = 25/520 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 427 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFS 486

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+TC  L D +G +F+  Y  YEA     E K  ++VPA+ LW  +L    ETG P++ +
Sbjct: 487 PSTCPDLHDKFGAEFEKAYTAYEAKVASGELKLFKKVPAQSLWRKMLTMLFETGHPWITF 546

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKT----YN 261
           KD CN +S QQ++G +  SNLCTEI   TS  E+AVCNL S+ L  ++ P         +
Sbjct: 547 KDPCNIRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSVNLAAHLFPKGHAKAGQID 606

Query: 262 FTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN 321
             KLK       + L+ +ID+N+Y V +ARNSN++HRP+G+G+ G  D    +R+P+  +
Sbjct: 607 HDKLKRTVSTAMRMLDNVIDINYYAVAKARNSNLKHRPVGLGIMGFQDCLHDLRIPYSSD 666

Query: 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW--------GVT 373
            +     +  E + Y A  AS ++AA  G Y +Y GS   +GIL  D          G  
Sbjct: 667 AAIEFADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWDKGILPQDSLNLLLEQRGGYV 726

Query: 374 PTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS 430
             D+    DW AL+ +I ++G+RNS  +A  PTA+ + I+G +   EP   NI+ +  LS
Sbjct: 727 EVDMSSNLDWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLS 786

Query: 431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTV 490
           GEF V+N HL+ DL  LGLWD+ M   L   +GS+  I+ IP +L++LY T +E+  K +
Sbjct: 787 GEFTVINDHLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWL 846

Query: 491 LDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           ++ A+ R  +IDQ+QSLNIYM+ ++  K+   +   W  GLKT  YYLR   A +A + T
Sbjct: 847 IEAASRRQKWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKT-TYYLRALGATSAEKST 905

Query: 551 IDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKE 590
             +    NA++S     +       E+   A  C  DN E
Sbjct: 906 -SRAGSLNAVSSGGGAGEMSASPVVEE---AKFCSIDNPE 941



 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 123/212 (58%), Gaps = 5/212 (2%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW AL+ +I ++G+RNS  +A  PTA+ + I+G +   EP   NI+ +  LSGEF V+N 
Sbjct: 735 DWDALRARIQQNGMRNSNCVAIAPTATISNIIGVSACIEPTYQNIFVKSNLSGEFTVIND 794

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           HL+ DL  LGLWD+ M   L   +GS+  I+ IP +L++LY T +E+  K +++ A+ R 
Sbjct: 795 HLVNDLKALGLWDEVMIADLKYFDGSLAKIDRIPAELRELYATAFEVEPKWLIEAASRRQ 854

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLNIYM+ ++  K+   +   W  GLKT  YYLR   A +A + T  +    N
Sbjct: 855 KWIDQAQSLNIYMSGVSGRKLDETYKLAWLRGLKT-TYYLRALGATSAEKST-SRAGSLN 912

Query: 963 AMASKDTRSQEEIQADQEQAMAAMICRRDNKE 994
           A++S     +       E+   A  C  DN E
Sbjct: 913 AVSSGGGAGEMSASPVVEE---AKFCSIDNPE 941



 Score = 89.7 bits (221), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 52/85 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV    +W+L  
Sbjct: 427 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTSNWIPDLFMKRVMEGGEWTLFS 486

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAE 85
           P+ C  L D +G +F+  Y  YEA+
Sbjct: 487 PSTCPDLHDKFGAEFEKAYTAYEAK 511



 Score = 40.4 bits (93), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    +R+P+  + +     +  E + Y A  AS ++AA  G Y +Y GS   
Sbjct: 647 LGIMGFQDCLHDLRIPYSSDAAIEFADRSMEAVCYYAYWASTDLAAERGRYASYRGSLWD 706

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 707 KGILPQD 713


>gi|398879150|ref|ZP_10634252.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM67]
 gi|398884202|ref|ZP_10639143.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM60]
 gi|398195271|gb|EJM82321.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM60]
 gi|398197511|gb|EJM84490.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM67]
          Length = 964

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 294/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 922 TGKL-NAVSSGGNHGEDSV 939



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 927 AVSSGGNHGEDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|398996294|ref|ZP_10699154.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM21]
 gi|398127253|gb|EJM16666.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM21]
          Length = 964

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 294/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 922 TGKL-NAVSSGGNHGEDSV 939



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 927 AVSSGGNHGEDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|257485934|ref|ZP_05639975.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci str. ATCC 11528]
 gi|422680997|ref|ZP_16739268.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci str. ATCC 11528]
 gi|331010342|gb|EGH90398.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. tabaci str. ATCC 11528]
          Length = 970

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 288/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   D   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VDGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTVDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
                  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 683 QFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGEKYIDV 742

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 46.2 bits (108), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADTSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 720 KGILPLD 726



 Score = 39.7 bits (91), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW--------AALKVLALVYGLKLWFAILD 691
           DGP+  +  S V      +D+ G    + +++          +K+   +    LW  +L 
Sbjct: 497 DGPWTLFSPSEVPD---LHDLTGKAFQERYEYYEALTEYPGKIKLFKTIQAKDLWRKMLS 553

Query: 692 SQIETGTPYMLYKDACNRKSNQQNLEVIE 720
              ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 554 MLFETGHPWLTFKDPCNLRSPQQHVGVVH 582


>gi|388466455|ref|ZP_10140665.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           synxantha BG33R]
 gi|388010035|gb|EIK71222.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           synxantha BG33R]
          Length = 964

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/524 (38%), Positives = 300/524 (57%), Gaps = 24/524 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 566

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 567 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 624

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 625 LERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 684

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 685 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 744

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 745 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 803

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 804 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 863

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 864 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 922

Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             K+ NA++S +      + A    A     C  D + DC   Q
Sbjct: 923 TGKL-NAVSSGNHGDDSVLAAPAGPAPVPKACAID-EPDCEACQ 964



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 119/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 927

Query: 963 AMAS 966
           A++S
Sbjct: 928 AVSS 931



 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 46.6 bits (109), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 662 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 721

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 722 KGILPLD 728


>gi|422297662|ref|ZP_16385294.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           avellanae BPIC 631]
 gi|422592220|ref|ZP_16666842.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. morsprunorum str. M302280]
 gi|422653513|ref|ZP_16716277.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|330880141|gb|EGH14290.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. morsprunorum str. M302280]
 gi|330966560|gb|EGH66820.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           syringae pv. actinidiae str. M302091]
 gi|407990862|gb|EKG32853.1| ribonucleoside-diphosphate reductase subunit alpha [Pseudomonas
           avellanae BPIC 631]
          Length = 970

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 197/490 (40%), Positives = 289/490 (58%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F + Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 564

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 565 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTDK 622

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           LK    +  + L+ +ID+N+Y V +A+NSN+RHRP+G+G+ G  D      +P+  + + 
Sbjct: 623 LKRTIDVAVRMLDNVIDINYYSVPQAKNSNLRHRPVGLGIMGFQDALYLQHIPYGSDAAV 682

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
                  E + Y A++ASC++A   G Y+T++GS  SQGIL  D   +            
Sbjct: 683 QFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWSQGILPLDSQQILIEQRGQKYIDV 742

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 743 DLKESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 801

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 802 FTVINPYLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 861

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++
Sbjct: 862 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVN 920

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 921 TGKL-NAVSS 929



 Score =  142 bits (358), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/184 (42%), Positives = 118/184 (64%), Gaps = 3/184 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 749 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL    LWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 808 YLVRDLKARDLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + T++  K+ N
Sbjct: 868 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTVNTGKL-N 925

Query: 963 AMAS 966
           A++S
Sbjct: 926 AVSS 929



 Score = 84.0 bits (206), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D  W+L  
Sbjct: 445 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGPWTLFS 504

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F + Y+ YEA
Sbjct: 505 PSEVPDLHDLTGKAFQERYEYYEA 528



 Score = 48.1 bits (113), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +        E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 660 LGIMGFQDALYLQHIPYGSDAAVQFADSSMEAVSYYAIQASCDLADERGAYETFQGSLWS 719

Query: 653 QGILQYD 659
           QGIL  D
Sbjct: 720 QGILPLD 726


>gi|398859181|ref|ZP_10614861.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM79]
 gi|398237322|gb|EJN23075.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM79]
          Length = 964

 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/490 (39%), Positives = 290/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIT--NGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|398938075|ref|ZP_10667564.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM41(2012)]
 gi|398166268|gb|EJM54369.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM41(2012)]
          Length = 964

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/499 (39%), Positives = 294/499 (58%), Gaps = 23/499 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALSEYPGKIKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIT--NGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMASKDARSQEEI 571
             K+ NA++S     ++ +
Sbjct: 922 TGKL-NAVSSGGNHGEDSV 939



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 122/193 (63%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S     ++ +
Sbjct: 927 AVSSGGNHGEDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|398904201|ref|ZP_10652125.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM50]
 gi|398176143|gb|EJM63873.1| ribonucleoside-diphosphate reductase, alpha subunit [Pseudomonas
           sp. GM50]
          Length = 964

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 291/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 565

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 566 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHIT--NGKLDTAK 623

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 624 LERTVNTAVRMLDNVIDINYYSVPQAKNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 683

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 684 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 743

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 744 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 802

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 803 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 862

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 863 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 921

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 922 TGKL-NAVSS 930



 Score =  146 bits (368), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 750 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 808

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 809 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 868

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 869 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 926

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 927 AVSSGGNHGDDSV 939



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 446 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 505

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 506 PSEVPDLHDLTGKAFEERYEYYEA 529



 Score = 46.6 bits (109), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 661 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 720

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 721 KGILPLD 727


>gi|88812073|ref|ZP_01127325.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
 gi|88790577|gb|EAR21692.1| ribonucleotide-diphosphate reductase alpha subunit [Nitrococcus
           mobilis Nb-231]
          Length = 955

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/478 (41%), Positives = 285/478 (59%), Gaps = 21/478 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD FMRRV  +A W+L  
Sbjct: 454 RRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMRRVIDEADWTLFS 513

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F+  Y++YEA+      +  ++V A  LW  +L    ETG P++ +
Sbjct: 514 PDETPDLHDLYGAAFEAHYREYEAQAERGELRNYKRVSAVALWRRMLSMLFETGHPWITF 573

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KDACN +S QQ+ G +  SNLCTEI   TS DE+AVCNL S+ L  ++    +  +  +L
Sbjct: 574 KDACNARSPQQHTGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLAAHVGA--EGIDAARL 631

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +   +   + L+ +ID+N+Y V +AR +NMRHRP+G+GV G  D   ++ LP+   E+  
Sbjct: 632 ERTVRTAMRMLDNVIDINWYSVPQARRANMRHRPVGLGVMGFQDALYRLGLPYASREAVD 691

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV------------T 373
              +  ETI Y A++AS E+A   G Y ++ GS  S+GIL  D   +            T
Sbjct: 692 FADRSMETISYYAIQASSELAQERGAYASFAGSLWSRGILPIDSIRLLAEQRGEPLTMDT 751

Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
            T L DW AL+E+I + G+RNS  +A  PTA+ A I+G + S EP   N+Y +  LSGEF
Sbjct: 752 STTL-DWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSPSIEPTYRNLYVKSNLSGEF 810

Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
            VVN HL+  L   GLWD  + + L   +GS+Q IE +P+ +K LY T +EI    +++ 
Sbjct: 811 TVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEPIKALYTTAFEIDPNWLVEA 870

Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
           A+ R  ++DQSQSLN+YMAE +  K+ +++ + W+ GLKT  YYLR+  A +  + T+
Sbjct: 871 ASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKT-TYYLRSLGATHVEKSTV 927



 Score =  143 bits (360), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 115/179 (64%), Gaps = 2/179 (1%)

Query: 777 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 836
           T T L DW AL+E+I + G+RNS  +A  PTA+ A I+G + S EP   N+Y +  LSGE
Sbjct: 751 TSTTL-DWDALRERIRRTGMRNSNCLAIAPTATIANIVGVSPSIEPTYRNLYVKSNLSGE 809

Query: 837 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 896
           F VVN HL+  L   GLWD  + + L   +GS+Q IE +P+ +K LY T +EI    +++
Sbjct: 810 FTVVNPHLVEALKARGLWDAVLVNDLKYFDGSVQAIERVPEPIKALYTTAFEIDPNWLVE 869

Query: 897 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
            A+ R  ++DQSQSLN+YMAE +  K+ +++ + W+ GLKT  YYLR+  A +  + T+
Sbjct: 870 AASRRQKWLDQSQSLNLYMAEASGPKLDALYRNAWRRGLKT-TYYLRSLGATHVEKSTV 927



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    W+PD FMRRV  +A W+L  
Sbjct: 454 RRGAVCAYLEIWHLDIEEFLELRKNTGDERRRTHDMNTANWVPDLFMRRVIDEADWTLFS 513

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G  F+  Y++YEA+ 
Sbjct: 514 PDETPDLHDLYGAAFEAHYREYEAQA 539



 Score = 47.4 bits (111), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +GV G  D   ++ LP+   E+     +  ETI Y A++AS E+A   G Y ++ GS  S
Sbjct: 668 LGVMGFQDALYRLGLPYASREAVDFADRSMETISYYAIQASSELAQERGAYASFAGSLWS 727

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 728 RGILPID 734


>gi|421141195|ref|ZP_15601183.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens BBc6R8]
 gi|404507595|gb|EKA21577.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas
           fluorescens BBc6R8]
          Length = 965

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/490 (40%), Positives = 291/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 566

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 567 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 624

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 625 LERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 684

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV---------TPT 375
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D   +            
Sbjct: 685 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEQRGQKYIDV 744

Query: 376 DL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
           DL    DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 745 DLNESLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 803

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 804 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 863

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 864 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 922

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 923 TGKL-NAVSS 931



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 927

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 928 AVSSGGNHGDDSV 940



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 46.6 bits (109), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 662 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 721

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 722 KGILPLD 728


>gi|414168812|ref|ZP_11424775.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
           clevelandensis ATCC 49720]
 gi|410887548|gb|EKS35358.1| ribonucleoside-diphosphate reductase, alpha subunit [Afipia
           clevelandensis ATCC 49720]
          Length = 968

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 205/527 (38%), Positives = 299/527 (56%), Gaps = 26/527 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D +WSL  
Sbjct: 447 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEWSLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G KF   Y+ YEA     E +  ++V A  LW  +L    ETG P++ +
Sbjct: 507 PDETPDLHDLYGPKFKTAYEAYEAKADRGEMRVFKRVRATDLWRRMLTMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S QQ++G +  SNLCTEI   TS DEVAVCNL S+  N+  +      +  KL
Sbjct: 567 KDPCNLRSPQQHVGVVHSSNLCTEITLNTSADEVAVCNLGSV--NLLNHTTGSGIDHDKL 624

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           K       + L+ ++D+NFY + EAR SN+RHRP+G+G+ G  D     R+P    ++  
Sbjct: 625 KRTVTTAVRMLDNVVDINFYTIPEARRSNLRHRPVGLGLMGFQDALHAQRIPVATEKAVA 684

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-----------TP 374
              +  E I Y A+ AS ++AA  G Y +++GS  S+GIL  D   +           T 
Sbjct: 685 FADESMEAISYHAISASVDLAAERGRYPSFDGSLWSRGILPIDSIAILSDARGGATFDTS 744

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T L DW++L+E++ + G+RNS ++A  PTA+ + I G  +S EP   N+Y +  +SG+F 
Sbjct: 745 TTL-DWSSLRERVRETGMRNSNVMAIAPTATISNICGVAQSIEPAYQNLYVKSNMSGDFT 803

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
            VN  L+RDL   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI    +++ A
Sbjct: 804 EVNEFLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDTAWLIEAA 863

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
           A R  +IDQ+QSLN+Y+A  +  K+  ++   W LGLKT  YYLR++ A +  + T+  T
Sbjct: 864 ARRQKWIDQAQSLNLYIANPSGKKLDQLYRLAWSLGLKT-TYYLRSRSATHVEKSTLKGT 922

Query: 555 K-MANAMASKDARSQEEI---QADQEQAMA-AMICRRDNKEDCIGVQ 596
               NA+++    +   I   QA ++   A A+ C  DN  DC   Q
Sbjct: 923 DGKLNAVSATATAAAAPIIVPQAGKQTDFAEALACSIDNP-DCEACQ 968



 Score =  137 bits (344), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 7/219 (3%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW++L+E++ + G+RNS ++A  PTA+ + I G  +S EP   N+Y +  +SG+F  VN 
Sbjct: 748 DWSSLRERVRETGMRNSNVMAIAPTATISNICGVAQSIEPAYQNLYVKSNMSGDFTEVNE 807

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            L+RDL   GLWD+ M   L   +GS+  I+ +P  LK LY T +EI    +++ AA R 
Sbjct: 808 FLVRDLKSRGLWDEVMVSDLKYFDGSVGQIDRVPDDLKALYATAFEIDTAWLIEAAARRQ 867

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK-MA 961
            +IDQ+QSLN+Y+A  +  K+  ++   W LGLKT  YYLR++ A +  + T+  T    
Sbjct: 868 KWIDQAQSLNLYIANPSGKKLDQLYRLAWSLGLKT-TYYLRSRSATHVEKSTLKGTDGKL 926

Query: 962 NAMASKDTRSQEEI---QADQEQAMA-AMICRRDNKEDC 996
           NA+++  T +   I   QA ++   A A+ C  DN  DC
Sbjct: 927 NAVSATATAAAAPIIVPQAGKQTDFAEALACSIDNP-DC 964



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 53/86 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FL+L+KNTG +  R  D+    W+PD FM+RVE D +WSL  
Sbjct: 447 RKGAVCAYLETWHIDIEEFLDLRKNTGDDRRRTHDMNTANWVPDLFMQRVEQDGEWSLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G KF   Y+ YEA+ 
Sbjct: 507 PDETPDLHDLYGPKFKTAYEAYEAKA 532



 Score = 44.7 bits (104), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 15/106 (14%)

Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
            RR N   +   +G+ G  D     R+P    ++     +  E I Y A+ AS ++AA  
Sbjct: 649 ARRSNLRHRPVGLGLMGFQDALHAQRIPVATEKAVAFADESMEAISYHAISASVDLAAER 708

Query: 641 GPYQTYEGSPVSQGILQYDMWGV-----------TPTDLWDWAALK 675
           G Y +++GS  S+GIL  D   +           T T L DW++L+
Sbjct: 709 GRYPSFDGSLWSRGILPIDSIAILSDARGGATFDTSTTL-DWSSLR 753


>gi|226945385|ref|YP_002800458.1| ribonucleoside-diphosphate reductase subunit alpha [Azotobacter
            vinelandii DJ]
 gi|226720312|gb|ACO79483.1| ribonucleoside-diphosphate reductase, alpha subunit precursor
            [Azotobacter vinelandii DJ]
          Length = 1338

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 295/523 (56%), Gaps = 25/523 (4%)

Query: 91   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
            R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 824  RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFS 883

Query: 151  PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
            P+  R L D  G  F++ Y+ YEA     + K  + + A+ LW  +L    ETG P++ +
Sbjct: 884  PSDVRDLHDLTGRAFEERYEYYEALTQYGKIKLFKTIAAKDLWRKMLSMLFETGHPWLTF 943

Query: 206  KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
            KD CN +S QQ++G +  SNLCTEI   TS  E+AVCNL SI L  +IN  D   +  KL
Sbjct: 944  KDPCNLRSPQQHVGVVHSSNLCTEITLNTSDSEIAVCNLGSINLVNHIN--DGRLDTEKL 1001

Query: 266  KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
                K   + L+ +ID+N+Y V+ ARN+N RHRP+G+G+ G  D      + +    +  
Sbjct: 1002 SRTVKTAVRMLDNVIDINYYSVDTARNANFRHRPVGLGIMGFQDALYLQHIAYGSEAAIA 1061

Query: 326  LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP----------- 374
               +  E I Y A++ASC++A   G Y ++EGS  S+GIL  D   +             
Sbjct: 1062 FADRSMEAISYYAIQASCDLAEERGAYSSFEGSLWSRGILPLDSLDILAEQRGTKYIEVD 1121

Query: 375  -TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
             +   DWA L+E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF
Sbjct: 1122 RSSTLDWAPLRERV-KKGMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEF 1180

Query: 434  QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
             V+N +L+ DL    LWD  M + L   +GS+Q IE IP  LK LY T +E+  K +++ 
Sbjct: 1181 TVINPYLVHDLKARELWDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFEVETKWIVEA 1240

Query: 494  AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +A + TI+ 
Sbjct: 1241 ASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSAEKSTINT 1299

Query: 554  TKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596
             K+ NA++S    S     A+ + A     C  DN  DC   Q
Sbjct: 1300 GKL-NAVSSVIDESLS--AAEPKPAPVPQACSIDNP-DCEACQ 1338



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/214 (40%), Positives = 127/214 (59%), Gaps = 6/214 (2%)

Query: 783  DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
            DWA L+E++ K G+RNS ++A  PTA+ + I+G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 1127 DWAPLRERV-KKGMRNSNIMAIAPTATISNIVGVSQSIEPTYQNLYVKSNLSGEFTVINP 1185

Query: 843  HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
            +L+ DL    LWD  M + L   +GS+Q IE IP  LK LY T +E+  K +++ A+ R 
Sbjct: 1186 YLVHDLKARELWDGVMVNDLKYYDGSVQQIERIPTDLKALYATAFEVETKWIVEAASRRQ 1245

Query: 903  AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
             +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +A + TI+  K+ N
Sbjct: 1246 KWIDQAQSLNLYIAGASGKKLDVTYRMAWFRGLKT-TYYLRALAATSAEKSTINTGKL-N 1303

Query: 963  AMASKDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
            A++S    S     A+ + A     C  DN  DC
Sbjct: 1304 AVSSVIDESLS--AAEPKPAPVPQACSIDNP-DC 1334



 Score = 89.4 bits (220), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG +  R  D+    WIPD FM+RV  D QW+L  
Sbjct: 824 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGQWTLFS 883

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+  R L D  G  F++ Y+ YEA
Sbjct: 884 PSDVRDLHDLTGRAFEERYEYYEA 907



 Score = 42.7 bits (99), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 34/67 (50%)

Query: 593  IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
            +G+ G  D      + +    +     +  E I Y A++ASC++A   G Y ++EGS  S
Sbjct: 1038 LGIMGFQDALYLQHIAYGSEAAIAFADRSMEAISYYAIQASCDLAEERGAYSSFEGSLWS 1097

Query: 653  QGILQYD 659
            +GIL  D
Sbjct: 1098 RGILPLD 1104



 Score = 40.8 bits (94), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 668 LWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
           L  +  +K+   +    LW  +L    ETG P++ +KD CN +S QQ++ V+ 
Sbjct: 908 LTQYGKIKLFKTIAAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVH 960


>gi|408480357|ref|ZP_11186576.1| ribonucleotide-diphosphate reductase subunit alpha [Pseudomonas sp.
           R81]
          Length = 965

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/490 (39%), Positives = 290/490 (59%), Gaps = 23/490 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA------EGKFIRQVPARKLWFAILDSQIETGTPYML 204
           P+    L D  G+ F++ Y+ YEA      + K  + + A+ LW  +L    ETG P++ 
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEALTEYPGKVKLFKTIQAKDLWRKMLSMLFETGHPWLT 566

Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTK 264
           +KD CN +S QQ++G +  SNLCTEI   T+KDE+AVCNL SI L  +I   +   +  K
Sbjct: 567 FKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIAVCNLGSINLPNHI--VNGKLDTAK 624

Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
           L+       + L+ +ID+N+Y V +A+NSN +HRP+G+G+ G  D      +P+  + + 
Sbjct: 625 LERTVNTAVRMLDNVIDINYYSVPQAQNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAV 684

Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW------------GV 372
               +  E + Y A++ASC++A   G Y+T++GS  S+GIL  D               V
Sbjct: 685 EFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWSKGILPLDSQQILIEARGQKYIDV 744

Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
              +  DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGE
Sbjct: 745 DLNETLDWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGE 803

Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
           F V+N +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D
Sbjct: 804 FTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVD 863

Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
            A+ R  +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+
Sbjct: 864 AASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTIN 922

Query: 553 KTKMANAMAS 562
             K+ NA++S
Sbjct: 923 TGKL-NAVSS 931



 Score =  146 bits (368), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 121/193 (62%), Gaps = 3/193 (1%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DWA ++ ++ K G+RNS ++A  PTA+ A I G ++S EP   N+Y +  LSGEF V+N 
Sbjct: 751 DWAPVRARVQK-GIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSGEFTVINP 809

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL   GLWD  M + L   +GS+Q IE IPQ+LK+LY T +E+  K ++D A+ R 
Sbjct: 810 YLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKELYATAFEVDTKWIVDAASRRQ 869

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
            +IDQ+QSLN+Y+A  +  K+   +   W  GLKT  YYLR   A +  + TI+  K+ N
Sbjct: 870 KWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGLKT-TYYLRALAATSTEKSTINTGKL-N 927

Query: 963 AMASKDTRSQEEI 975
           A++S      + +
Sbjct: 928 AVSSGGNHGDDSV 940



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 52/84 (61%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +F+EL+KNTG +  R  D+    WIPD FM+RV  D +W+L  
Sbjct: 447 RKGAVCAYLETWHMDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGKWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYEA 84
           P+    L D  G+ F++ Y+ YEA
Sbjct: 507 PSEVPDLHDLTGKAFEERYEYYEA 530



 Score = 46.6 bits (109), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 37/67 (55%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D      +P+  + +     +  E + Y A++ASC++A   G Y+T++GS  S
Sbjct: 662 LGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSYYAIQASCDLADERGAYETFQGSLWS 721

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 722 KGILPLD 728


>gi|421485727|ref|ZP_15933282.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           piechaudii HLE]
 gi|400196039|gb|EJO29020.1| ribonucleotide-diphosphate reductase subunit alpha [Achromobacter
           piechaudii HLE]
          Length = 976

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/479 (40%), Positives = 277/479 (57%), Gaps = 20/479 (4%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+ C  L D  G  F++ Y  YE      E K  +++PA  LW  +L    ETG P++ +
Sbjct: 507 PSDCPDLHDKVGRAFEEAYVGYENRVASGELKLYKKMPALTLWRKMLSMLFETGHPWITF 566

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---TYNF 262
           KD CN +S QQ++G +  SNLCTEI   T++ E+AVCNL S+ L  ++ PA       + 
Sbjct: 567 KDPCNIRSPQQHVGVVHSSNLCTEITLNTNESEIAVCNLGSVNLVAHMKPAAGGGFELDH 626

Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
            K+K    I  + L+ +ID+N+Y VE+ARNSN RHRP+G+G+ G  D    MR+P+    
Sbjct: 627 DKIKRTVSIAMRMLDNVIDINYYAVEKARNSNARHRPVGMGIMGFQDCLQMMRVPYASQA 686

Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG----------- 371
           +     +  E + Y A  AS  +A   G YQ+YEGS  S+GIL  D              
Sbjct: 687 AVEFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWSRGILPQDTLKMLRDERGGHVE 746

Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
           V  +   DW  L+ +I +HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSG
Sbjct: 747 VDESSSLDWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSG 806

Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 491
           EF VVN +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    ++
Sbjct: 807 EFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLV 866

Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
           + A+ R  +IDQ+QSLNIYM+  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 867 ECASRRQKWIDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKT-TYYLRTLGATSAEKST 924



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/172 (42%), Positives = 109/172 (63%), Gaps = 1/172 (0%)

Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
           DW  L+ +I +HG+RNS  +A  PTA+ + I+G +   EP   N+Y +  LSGEF VVN 
Sbjct: 754 DWDTLRARIKQHGMRNSNCVAIAPTATISNIIGVSACIEPTFQNLYVKSNLSGEFTVVND 813

Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
           +L+RDL +LGLWD+ M   L   +GS+  I+ +P +L++LY T +E+    +++ A+ R 
Sbjct: 814 YLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRELYATAFEVEPSWLVECASRRQ 873

Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
            +IDQ+QSLNIYM+  +  K+   +   W  GLKT  YYLRT  A +A + T
Sbjct: 874 KWIDQAQSLNIYMSGASGKKLDDTYKLAWLRGLKT-TYYLRTLGATSAEKST 924



 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 49/83 (59%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL+KNTG E  R  D+    WIPD FM+RV    +W+L  
Sbjct: 447 RKGAVCTYLESWHLDIEEFLELRKNTGDERRRTHDMNTANWIPDLFMKRVMEGGEWTLFS 506

Query: 61  PNACRGLSDSWGEKFDDLYKKYE 83
           P+ C  L D  G  F++ Y  YE
Sbjct: 507 PSDCPDLHDKVGRAFEEAYVGYE 529



 Score = 43.9 bits (102), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
           +G+ G  D    MR+P+    +     +  E + Y A  AS  +A   G YQ+YEGS  S
Sbjct: 666 MGIMGFQDCLQMMRVPYASQAAVEFADRSMEAVCYHAYFASSLLAEERGRYQSYEGSLWS 725

Query: 653 QGILQYD 659
           +GIL  D
Sbjct: 726 RGILPQD 732


>gi|268316002|ref|YP_003289721.1| ribonucleoside-diphosphate reductase subunit alpha [Rhodothermus
           marinus DSM 4252]
 gi|262333536|gb|ACY47333.1| ribonucleoside-diphosphate reductase, alpha subunit [Rhodothermus
           marinus DSM 4252]
          Length = 926

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/478 (41%), Positives = 282/478 (58%), Gaps = 18/478 (3%)

Query: 91  RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
           R GA   YLE WH DI +FLEL++NTG E  R  D+    WIPD FM+RV     W+L  
Sbjct: 411 RKGAVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFS 470

Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLY 205
           P+    L D +G  F + Y+ YE E      +  R++ A  LW  +L    ETG P++ +
Sbjct: 471 PDEVPDLHDLYGRAFRERYEHYEREAEAGRIRNWRRIEAVALWRKMLSMLFETGHPWLTF 530

Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
           KD CN +S Q ++G +  SNLCTEI   TS +EVAVCNL SI L  +++   +  +  KL
Sbjct: 531 KDPCNIRSPQDHVGVVHSSNLCTEITLNTSPEEVAVCNLGSINLVAHVDEQGE-LDREKL 589

Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
           +D  +   + L+ +ID+NFYP+ EAR SN+RHRPIG+G+ G  D+  +  L +    +  
Sbjct: 590 RDTIRTAVRMLDNVIDLNFYPIPEARTSNLRHRPIGLGLMGFQDVLYRRGLSYASEAAVE 649

Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGIL-----------QYDMWGVTP 374
           L  +  E I Y A EAS ++AA  G Y T++GS   +G+L           + +   V  
Sbjct: 650 LADEFMEFIAYCAYEASSDLAAERGAYPTFKGSKWDRGLLPLDTLDLLEAERGEPVPVPR 709

Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
           T   DW AL+EKI + G+RNS ++A  PTA+ A I G + S EP   N+Y +  LSGEF 
Sbjct: 710 TARLDWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSGEFT 769

Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
            +N +L+RDL   GLWD  M D L   +GS+Q+I+ IP +LK  Y+T +EI  + +++ A
Sbjct: 770 QLNPYLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLIECA 829

Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
           A R  +IDQSQSLN+Y+AE +  K+S M+   W+LGLKT  YYLR   A    + T+D
Sbjct: 830 ARRQKWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKT-TYYLRALAATQIEKSTLD 886



 Score =  153 bits (387), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/181 (46%), Positives = 116/181 (64%), Gaps = 1/181 (0%)

Query: 776 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 835
           V  T   DW AL+EKI + G+RNS ++A  PTA+ A I G + S EP   N+Y +  LSG
Sbjct: 707 VPRTARLDWDALREKIRRQGMRNSNVLAIAPTATIANICGVSPSIEPTYKNLYVKSNLSG 766

Query: 836 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
           EF  +N +L+RDL   GLWD  M D L   +GS+Q+I+ IP +LK  Y+T +EI  + ++
Sbjct: 767 EFTQLNPYLVRDLKARGLWDKEMLDDLKYYDGSVQEIDRIPPELKARYRTAFEIEPRWLI 826

Query: 896 DMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
           + AA R  +IDQSQSLN+Y+AE +  K+S M+   W+LGLKT  YYLR   A    + T+
Sbjct: 827 ECAARRQKWIDQSQSLNLYLAEPSGRKLSEMYQLAWQLGLKT-TYYLRALAATQIEKSTL 885

Query: 956 D 956
           D
Sbjct: 886 D 886



 Score = 83.6 bits (205), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 49/86 (56%)

Query: 1   RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
           R GA   YLE WH DI +FLEL++NTG E  R  D+    WIPD FM+RV     W+L  
Sbjct: 411 RKGAVCAYLEVWHLDIEEFLELRRNTGDERRRTHDMNTACWIPDLFMQRVRERKHWTLFS 470

Query: 61  PNACRGLSDSWGEKFDDLYKKYEAEG 86
           P+    L D +G  F + Y+ YE E 
Sbjct: 471 PDEVPDLHDLYGRAFRERYEHYEREA 496


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,848,309,379
Number of Sequences: 23463169
Number of extensions: 686298248
Number of successful extensions: 1516772
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5686
Number of HSP's successfully gapped in prelim test: 836
Number of HSP's that attempted gapping in prelim test: 1464065
Number of HSP's gapped (non-prelim): 33508
length of query: 998
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 845
effective length of database: 8,769,330,510
effective search space: 7410084280950
effective search space used: 7410084280950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)