BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1689
(998 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ + +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
+E+ AAM+C +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788
Score = 326 bits (835), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ + + +E+ AAM+C +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A + + ++ IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LK YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 594
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 73/88 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
PN C GL + WGE+F+ LY YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96 DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/451 (75%), Positives = 391/451 (86%), Gaps = 1/451 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 339
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ ++ TY+F KL +V K
Sbjct: 340 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 398
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 399 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 458
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 459 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 518
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 519 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 578
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 579 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 638
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 541
+AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 639 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669
Score = 295 bits (756), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 138/177 (77%), Positives = 154/177 (87%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 493 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 552
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 553 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 612
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 613 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTR 669
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A + + ++ IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A
Sbjct: 418 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 477
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LK YG++
Sbjct: 478 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 521
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 73/88 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
PN C GL + WGE+F+ LY YE +G V
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRV 307
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 23 DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 76
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I+
Sbjct: 306 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 351
>pdb|3TB9|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Amppnp And Cdp
pdb|3TBA|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 Q288a With
Dgtp And Adp
Length = 888
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P + GLSD +G++F+ LY +YE EG+ + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL +I ++ TYNF KL
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW P +WDW L++
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
LN+++ K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMW P +WDW L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+++MAADR +IDQS SLN+++ K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
AIQFTID+
Sbjct: 750 AAIQFTIDQ 758
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P + GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 73/93 (78%)
Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
+GVQGLAD F+ +RLPFD E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
SQGILQ+DMW P +WDW L+ + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q I+ GVT +L + AA + A + + +A L ++I +++
Sbjct: 39 VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q +V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90 TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 35/37 (94%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423
>pdb|1ZYZ|A Chain A, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZYZ|B Chain B, Structures Of Yeast Ribonucloetide Reductase I
pdb|1ZZD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVS|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVT|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVU|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVV|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVW|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVX|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2CVY|A Chain A, Structures Of Yeast Ribonucleotide Reductase I
pdb|2EUD|A Chain A, Structures Of Yeast Ribonucleotide Reductase I Complexed
With Ligands And Subunit Peptides
pdb|2ZLF|A Chain A, The Structural Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|2ZLG|A Chain A, The Structual Basis For Peptidomimetic Inhibition Of
Eukaryotic Ribonucleotide Reductase
pdb|3K8T|A Chain A, Structure Of Eukaryotic Rnr Large Subunit R1 Complexed
With Designed Adp Analog Compound
pdb|3PAW|A Chain A, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|B Chain B, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|C Chain C, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3PAW|D Chain D, Low Resolution X-Ray Crystal Structure Of Yeast Rnr1p With
Datp Bound In The A-Site
pdb|3S87|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Dgtp
And Adp
pdb|3S8B|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 With Amppnp
And Cdp
pdb|3RSR|A Chain A, Crystal Structure Of 5-Nitp Inhibition Of Yeast
Ribonucleotide Reductase
Length = 888
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P + GLSD +G++F+ LY +YE EG+ + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL +I ++ TYNF KL
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW P +WDW L++
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
LN+++ K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMW P +WDW L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+++MAADR +IDQS SLN+++ K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
AIQFTID+
Sbjct: 750 AAIQFTIDQ 758
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P + GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 73/93 (78%)
Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
+GVQGLAD F+ +RLPFD E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
SQGILQ+DMW P +WDW L+ + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q I+ GVT +L + AA + A + + +A L ++I +++
Sbjct: 39 VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q +V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90 TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 35/37 (94%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423
>pdb|3S8A|A Chain A, Structure Of Yeast Ribonucleotide Reductase R293a With
Dgtp
pdb|3S8C|A Chain A, Structure Of Yeast Ribonucleotide Reductase 1 R293a With
Amppnp And Cdp
Length = 888
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/466 (65%), Positives = 381/466 (81%), Gaps = 5/466 (1%)
Query: 92 PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 151
PGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L P
Sbjct: 294 PGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP 353
Query: 152 NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNR 211
+ GLSD +G++F+ LY +YE EG+ + + A+KLW++IL++Q ETGTP+++YKDACNR
Sbjct: 354 TSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNR 412
Query: 212 KSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLKD 267
KSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL +I ++ TYNF KL +
Sbjct: 413 KSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHE 472
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
+AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD E+RLLN
Sbjct: 473 IAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLN 532
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387
QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW P +WDW L++ I
Sbjct: 533 IQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDI 592
Query: 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 447
KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+L
Sbjct: 593 MKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDL 652
Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
G+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS SL
Sbjct: 653 GIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSL 712
Query: 508 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
N+++ K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 713 NLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758
Score = 275 bits (702), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMW P +WDW L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+++MAADR +IDQS SLN+++ K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
AIQFTID+
Sbjct: 750 AAIQFTIDQ 758
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 2 PGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 61
PGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L P
Sbjct: 294 PGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFSP 353
Query: 62 NACRGLSDSWGEKFDDLYKKYEAEG 86
+ GLSD +G++F+ LY +YE EG
Sbjct: 354 TSAPGLSDCYGDEFEALYTRYEKEG 378
Score = 129 bits (324), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 73/93 (78%)
Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
+GVQGLAD F+ +RLPFD E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
SQGILQ+DMW P +WDW L+ + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q I+ GVT +L + AA + A + + +A L ++I +++
Sbjct: 39 VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q +V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90 TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 35/37 (94%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423
>pdb|4R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
pdb|4R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Substrate, Gdp
And Effector Dttp From Escherichia Coli
Length = 761
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 132/488 (27%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT +YY T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|3R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|3R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Amppnp Occupying
The Activity Site From Escherichia Coli
pdb|2R1R|A Chain A, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|B Chain B, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2R1R|C Chain C, Ribonucleotide Reductase R1 Protein With Dttp Occupying
The Specificity Site From Escherichia Coli
pdb|2X0X|A Chain A, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|B Chain B, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|2X0X|C Chain C, Ribonucleotide Reductase R1 Subunit Of E. Coli To 2.3 A
Resolution
pdb|3UUS|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|A Chain A, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|B Chain B, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|C Chain C, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|D Chain D, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|A Chain A, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|B Chain B, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|C Chain C, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|D Chain D, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 761
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 132/488 (27%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT +YY T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|7R1R|A Chain A, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|B Chain B, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
pdb|7R1R|C Chain C, Ribonucleotide Reductase E441q Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC +I T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLQIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT +YY T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|1R1R|A Chain A, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|B Chain B, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
pdb|1R1R|C Chain C, Ribonucleotide Reductase R1 Protein Mutant Y730f With A
Reduced Active Site From Escherichia Coli
Length = 761
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT ++Y T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LFYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT ++Y T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LFYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|6R1R|A Chain A, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|B Chain B, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
pdb|6R1R|C Chain C, Ribonucleotide Reductase E441d Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 208/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC +I T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLDIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT +YY T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|5R1R|A Chain A, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|B Chain B, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
pdb|5R1R|C Chain C, Ribonucleotide Reductase E441a Mutant R1 Protein From
Escherichia Coli
Length = 761
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 131/488 (26%), Positives = 207/488 (42%), Gaps = 73/488 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC I T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLAIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 KPAANAIQ 548
+ A Q
Sbjct: 735 RDGAEDAQ 742
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N ++ ++ +K G+KT +YY T+ A Q
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDGAEDAQ 742
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|1RLR|A Chain A, Structure Of Ribonucleotide Reductase Protein R1
Length = 761
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 205/481 (42%), Gaps = 73/481 (15%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L ++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRT 540
L + FIDQS S N ++ ++ +K G+KT +YY T
Sbjct: 676 DGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNT 734
Query: 541 K 541
+
Sbjct: 735 R 735
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 41/172 (23%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLNIYM-------AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
FIDQS S N ++ ++ +K G+KT +YY T+
Sbjct: 685 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTR 735
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAP|A Chain A, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|B Chain B, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XAP|C Chain C, Ribonucleotide Reductase Y731no2y Modified R1 Subunit Of
E. Coli To 2.1 A Resolution
pdb|2XO5|A Chain A, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|B Chain B, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO5|C Chain C, Ribonucleotide Reductase Y731nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAK|A Chain A, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|B Chain B, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XAK|C Chain C, Ribonucleotide Reductase Y730no2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|A Chain A, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|B Chain B, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
pdb|2XO4|C Chain C, Ribonucleotide Reductase Y730nh2y Modified R1 Subunit Of
E. Coli
Length = 761
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAW|A Chain A, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|B Chain B, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
pdb|2XAW|C Chain C, Ribonucleotide Reductase Y730no2y And Y731f Modified R1
Subunit Of E. Coli
Length = 761
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAX|A Chain A, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|B Chain B, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
pdb|2XAX|C Chain C, Ribonucleotide Reductase Y730no2y And Y731a Modified R1
Subunit Of E. Coli
Length = 761
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAV|A Chain A, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|B Chain B, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
pdb|2XAV|C Chain C, Ribonucleotide Reductase Y731no2y And Y730f Modified R1
Subunit Of E. Coli
Length = 761
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 191/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAY|A Chain A, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|B Chain B, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
pdb|2XAY|C Chain C, Ribonucleotide Reductase Y730no2y And C439a Modified R1
Subunit Of E. Coli
Length = 761
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 190/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNL EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLALEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|2XAZ|A Chain A, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|B Chain B, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
pdb|2XAZ|C Chain C, Ribonucleotide Reductase Y730no2y And C439s Modified R1
Subunit Of E. Coli
Length = 761
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 190/441 (43%), Gaps = 65/441 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNL EI T E+A+C L++ L IN
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLSLEIALPTKPLNDVNDENGEIALCTLSAFNLGA-IN--- 473
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 474 ---NLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377
+ + L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDL 587
Query: 378 ---------WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV 428
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 588 DTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP---------- 637
Query: 429 LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-Q 487
R V + D + Q++ + + L D Y+ +WE+P
Sbjct: 638 ------------PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGN 675
Query: 488 KTVLDMAADRGAFIDQSQSLN 508
L + FIDQS S N
Sbjct: 676 DGYLQLVGIMQKFIDQSISAN 696
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 33/132 (25%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 597 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP------------------- 637
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
R V + D + Q++ + + L D Y+ +WE+P L +
Sbjct: 638 ---PRGYVSIKASKDGILRQVVPDY----------EHLHDAYELLWEMPGNDGYLQLVGI 684
Query: 901 RGAFIDQSQSLN 912
FIDQS S N
Sbjct: 685 MQKFIDQSISAN 696
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ E+F+ LY KYE +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKD 385
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL-------- 668
L + FE I Y L+AS E+A G + + ++GIL D + DL
Sbjct: 539 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTY---KKDLDTIANEPL 595
Query: 669 -WDWAALKVLALVYGLK 684
+DW AL+ +GL+
Sbjct: 596 HYDWEALRESIKTHGLR 612
>pdb|1PEM|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEO|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEQ|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|1PEU|A Chain A, Ribonucleotide Reductase Protein R1e From Salmonella
Typhimurium
pdb|2BQ1|E Chain E, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|F Chain F, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 714
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 111/493 (22%), Positives = 193/493 (39%), Gaps = 82/493 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310
Query: 151 P-NTCRGLSDSWG-----EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
P + R +G E++D+L +I AR + + + Q E+G PY++
Sbjct: 311 PYDIQRRYGKPFGDIAISERYDELIADPHVRKTYIN---ARDFFQTLAEIQFESGYPYIM 367
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE------------YTSKDEVAVCNLASIALNMY 252
++D NR + G I SNLC+EI++ YT CNL S+ +
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV 425
Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADLF 311
++ D + + + L + D+ + V N IG+G L
Sbjct: 426 MDSPD-------IGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478
Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQG--ILQY- 367
+ + + E+ F TI + A+ S +A G + + S + G QY
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538
Query: 368 -DMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
D W G+T W L++ + ++G+ N L A PT S + I
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598
Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
S P + I R+ K + E +
Sbjct: 599 TSSIHPIVAKIEIRK-------------------------EGKTGRVYYPAPFMTNENL- 632
Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAK-MSSMHFHGWKLGL 531
D+Y+ ++I + ++D A+ +DQ SL ++ + + ++ + W+ G+
Sbjct: 633 ----DMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGI 688
Query: 532 KTGMYYLRTKPAA 544
K+ +YY+R + A
Sbjct: 689 KS-LYYIRLRQLA 700
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310
Query: 61 PNACRGLSDSWGEKFDDL 78
P + +G+ F D+
Sbjct: 311 P---YDIQRRYGKPFGDI 325
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 32/175 (18%)
Query: 775 GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS 834
G+T W L++ + ++G+ N L A PT S + I S P + I R+
Sbjct: 557 GITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRK--- 613
Query: 835 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTV 894
K + E + D+Y+ ++I + +
Sbjct: 614 ----------------------EGKTGRVYYPAPFMTNENL-----DMYQDAYDIGPEKI 646
Query: 895 LDMAADRGAFIDQSQSLNIYMAEINYAK-MSSMHFHGWKLGLKTGMYYLRTKPAA 948
+D A+ +DQ SL ++ + + ++ + W+ G+K+ +YY+R + A
Sbjct: 647 IDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700
>pdb|1XJE|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJE|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp-Gdp Complex
pdb|1XJN|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|C Chain C, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJN|D Chain D, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Cdp Complex
pdb|1XJF|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJF|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp Complex
pdb|1XJG|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJG|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Datp-Udp Complex
pdb|1XJJ|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJJ|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp Complex
pdb|1XJM|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|1XJM|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dttp Complex
pdb|3O0N|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0N|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp And Adenosylcobalamin
pdb|3O0O|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0O|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosylcobalamin
pdb|3O0Q|A Chain A, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
pdb|3O0Q|B Chain B, Thermotoga Maritima Ribonucleotide Reductase, Nrdj, In
Complex With Dttp, Gdp And Adenosine
Length = 644
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 58/439 (13%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
R GA L H DI +F++ KK NTG+ +L G + E ++ E D + L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 149 MCP-NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
P +T R ++V R+L+ I + ++G P + +
Sbjct: 267 SHPRSTIR------------------------KKVKIRELFRKIATNAWKSGDPGLAFLG 302
Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
N+ I +N C EI + CNL SI + + N + + L++
Sbjct: 303 EMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYN--NGFVDLEALQE 356
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
+ +I + L+ +IDVN +P+++ + R +G+G+ G ADL ++ +P++ E+R
Sbjct: 357 LVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFA 416
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGS---------PVSQGILQYDMWGVTPTDLW 378
+ I A S E+ G + E S P + G+ YD
Sbjct: 417 ANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYD---------- 466
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQ 434
D K+ K RN L+ PT S + I + EP Y+R V + E
Sbjct: 467 DEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPL 526
Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
+ + +LR+ + + K+ ++ GS++DI +P+K+K ++ +I L M
Sbjct: 527 LYVNQVLREKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQ 584
Query: 495 ADRGAFIDQSQSLNIYMAE 513
++D + S I M +
Sbjct: 585 DAFQRYVDNNISKTINMPQ 603
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 790 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQVVNHHLL 845
K+ K RN L+ PT S + I + EP Y+R V + E + + +L
Sbjct: 474 KMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVL 533
Query: 846 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905
R+ + + K+ ++ GS++DI +P+K+K ++ +I L M ++
Sbjct: 534 REKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYV 591
Query: 906 DQSQSLNIYMAE 917
D + S I M +
Sbjct: 592 DNNISKTINMPQ 603
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
++++ +G+ G ADL ++ +P++ E+R + I A S E+ G +
Sbjct: 384 KESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPL 443
Query: 646 YEGS---------PVSQGILQYD 659
E S P + G+ YD
Sbjct: 444 LEISRYRTEDNFVPFAMGMSNYD 466
>pdb|1XJK|A Chain A, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
pdb|1XJK|B Chain B, Structural Mechanism Of Allosteric Substrate Specificity
In A Ribonucleotide Reductase: Dgtp-Adp Complex
Length = 644
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 102/439 (23%), Positives = 181/439 (41%), Gaps = 58/439 (13%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
R GA L H DI +F++ KK NTG+ +L G + E ++ E D + L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 149 MCP-NTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
P +T R ++V R+L+ I + ++G P + +
Sbjct: 267 SHPRSTIR------------------------KKVKIRELFRKIATNAWKSGDPGLAFLG 302
Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
N+ I +N C EI + CNL SI + + N + + L++
Sbjct: 303 EMNKYYPLYPHRKINSTNPCGEI----GLSDYEACNLGSIDVAKFYN--NGFVDLEALQE 356
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
+ +I + L+ +IDVN +P+++ + R +G+G+ G ADL ++ +P++ E+R
Sbjct: 357 LVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFA 416
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGS---------PVSQGILQYDMWGVTPTDLW 378
+ I A S E+ G + E S P + G+ YD
Sbjct: 417 ANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGMSNYD---------- 466
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQ 434
D K+ K RN L+ PT S + I + EP Y+R V + E
Sbjct: 467 DEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKDDGTKEPL 526
Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
+ + +LR+ + + K+ ++ GS++DI +P+K+K ++ +I L M
Sbjct: 527 LYVNQVLREKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQ 584
Query: 495 ADRGAFIDQSQSLNIYMAE 513
++D + S I M +
Sbjct: 585 DAFQRYVDNNISKTINMPQ 603
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 790 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL----SGEFQVVNHHLL 845
K+ K RN L+ PT S + I + EP Y+R V + E + + +L
Sbjct: 474 KMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKDDGTKEPLLYVNQVL 533
Query: 846 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905
R+ + + K+ ++ GS++DI +P+K+K ++ +I L M ++
Sbjct: 534 REKLNPEILKRIEKE--LIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYV 591
Query: 906 DQSQSLNIYMAE 917
D + S I M +
Sbjct: 592 DNNISKTINMPQ 603
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 645
++++ +G+ G ADL ++ +P++ E+R + I A S E+ G +
Sbjct: 384 KESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPL 443
Query: 646 YEGS---------PVSQGILQYD 659
E S P + G+ YD
Sbjct: 444 LEISRYRTEDNFVPFAMGMSNYD 466
>pdb|3CSK|A Chain A, Structure Of Dpp Iii From Saccharomyces Cerevisiae
Length = 711
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 214 NQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVT 273
N ++ G K C E+ + E+A N +S L + +P D + FT + +
Sbjct: 100 NFKSFGDTKFIPRC-EVKFFKQLLELAKINPSSSPLTL--SPVDVNHEFT-----SHHLF 151
Query: 274 KNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIF 331
+N++ID+ Y VEE + +G QG + + LP + LL +Q+F
Sbjct: 152 STINELIDIGIYHVEE------KAALLGFPSQGYTSAYY-LGLPVTPEDMALLKEQLF 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,673,880
Number of Sequences: 62578
Number of extensions: 1327539
Number of successful extensions: 3168
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2967
Number of HSP's gapped (non-prelim): 120
length of query: 998
length of database: 14,973,337
effective HSP length: 108
effective length of query: 890
effective length of database: 8,214,913
effective search space: 7311272570
effective search space used: 7311272570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)