BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1689
(998 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48591|RIR1_DROME Ribonucleoside-diphosphate reductase large subunit OS=Drosophila
melanogaster GN=RnrL PE=1 SV=2
Length = 812
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/506 (69%), Positives = 431/506 (85%), Gaps = 4/506 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++ WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL D WG++F+ LY+KYE EG+ R V A+ LWFAI+++Q+ETG PYML+KDACN
Sbjct: 364 PHKCPGLHDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACN 423
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQN+GTIKCSNLCTEIVEY++ DE+AVCNLASIALNM++ P +KTY+F KLK+V K
Sbjct: 424 RKSNQQNVGTIKCSNLCTEIVEYSAPDEIAVCNLASIALNMFVTP-EKTYDFKKLKEVTK 482
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
IVTKNLNKIID+N+YP+ EAR SN+RHRP+GIG+QG AD I MR P++ E+ LLN+QI
Sbjct: 483 IVTKNLNKIIDINYYPLPEARKSNLRHRPVGIGIQGFADALILMRFPYESEEAGLLNQQI 542
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A +GPY+TYEGSPVS+GILQYDMW PT+LWDW LKE I H
Sbjct: 543 FETIYYGALEASCELAQTEGPYETYEGSPVSKGILQYDMWDKVPTNLWDWQKLKESIRMH 602
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
GVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY+RRVLSGEFQVVNHHLLRDL EL LW
Sbjct: 603 GVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIYTRRVLSGEFQVVNHHLLRDLTELDLW 662
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
DD+MK+Q+I + GSIQ+IE IP K++DLYKTVWEI K+ + MAADRGAFIDQSQS NI+
Sbjct: 663 DDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWEISVKSTIKMAADRGAFIDQSQSFNIH 722
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ-- 568
+AE NY K++S+HF+ WK GLKTGMYYLRTKPAANAIQFT++K + A +M ++ ++
Sbjct: 723 VAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAANAIQFTVNKKQGAVSMNGQNGTAEGS 782
Query: 569 -EEIQADQEQAMAAMICRRDNKEDCI 593
++ + D+E+ MA M+C +NK+ C+
Sbjct: 783 PQKYEEDRERKMADMVCSLENKDACM 808
Score = 332 bits (852), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 153/232 (65%), Positives = 191/232 (82%), Gaps = 3/232 (1%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW PT+LWDW LKE I HGVRNSLL+APMPTASTAQI+GNNESFEPYT+NIY
Sbjct: 577 LQYDMWDKVPTNLWDWQKLKESIRMHGVRNSLLVAPMPTASTAQIMGNNESFEPYTTNIY 636
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQVVNHHLLRDL EL LWDD+MK+Q+I + GSIQ+IE IP K++DLYKTVWE
Sbjct: 637 TRRVLSGEFQVVNHHLLRDLTELDLWDDDMKNQIISSRGSIQNIETIPPKVRDLYKTVWE 696
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I K+ + MAADRGAFIDQSQS NI++AE NY K++S+HF+ WK GLKTGMYYLRTKPAA
Sbjct: 697 ISVKSTIKMAADRGAFIDQSQSFNIHVAEPNYGKLTSIHFYSWKAGLKTGMYYLRTKPAA 756
Query: 949 NAIQFTIDKTKMANAMASKDTRSQ---EEIQADQEQAMAAMICRRDNKEDCL 997
NAIQFT++K + A +M ++ ++ ++ + D+E+ MA M+C +NK+ C+
Sbjct: 757 NAIQFTVNKKQGAVSMNGQNGTAEGSPQKYEEDRERKMADMVCSLENKDACM 808
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 74/86 (86%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH D+F+FLELKKNTGKEE RARDLFY LWIPD FM+RVE++ WSLMC
Sbjct: 304 RPGAFAIYLEPWHSDVFEFLELKKNTGKEENRARDLFYALWIPDLFMKRVEANGDWSLMC 363
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P+ C GL D WG++F+ LY+KYE EG
Sbjct: 364 PHKCPGLHDVWGDEFEKLYEKYEQEG 389
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 73/92 (79%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IG+QG AD I MR P++ E+ LLN+QIFETIYYGALEASCE+A +GPY+TYEGSPVS
Sbjct: 514 IGIQGFADALILMRFPYESEEAGLLNQQIFETIYYGALEASCELAQTEGPYETYEGSPVS 573
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
+GILQYDMW PT+LWDW LK ++G++
Sbjct: 574 KGILQYDMWDKVPTNLWDWQKLKESIRMHGVR 605
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 9/109 (8%)
Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
GVT +L + AA ++ A + +AIL ++I + K A + +V E+
Sbjct: 61 GVTTQELDNLAA-EIAAGLTCNHPDYAILAARIAVSNLHKETKKAFS--------DVFED 111
Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
LYN VNKET + P++S+ HY ++ KNA RLNS+IIYDRDF YN+FGFK
Sbjct: 112 LYNHVNKETNQKVPLVSEFHYNVVKKNATRLNSSIIYDRDFGYNYFGFK 160
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 658 YDMWGVTPTDLWDWAALKVLA--LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 715
+D+WG L++ + A V LWFAI+++Q+ETG PYML+KDACNRKSNQQN
Sbjct: 371 HDVWGDEFEKLYEKYEQEGRANRTVKAQSLWFAIIEAQVETGNPYMLFKDACNRKSNQQN 430
Query: 716 LEVIE 720
+ I+
Sbjct: 431 VGTIK 435
>sp|P79732|RIR1_DANRE Ribonucleoside-diphosphate reductase large subunit OS=Danio rerio
GN=rrm1 PE=2 SV=1
Length = 794
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/503 (71%), Positives = 420/503 (83%), Gaps = 5/503 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY KYE EG+ R V A++LW+AI++SQ ETGTPYMLYKDACN
Sbjct: 353 PNDCPGLDECWGEEFEKLYAKYEQEGRAKRVVKAQQLWYAIIESQTETGTPYMLYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSN+QNLGTIKCSNLCTEIVEYTS DEVAVCNLASIALNMY+ +++T++F KL V K
Sbjct: 413 RKSNRQNLGTIKCSNLCTEIVEYTSADEVAVCNLASIALNMYVT-SERTFDFQKLASVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ KNLNKIID+N+YPV+EA NSN RHRPIGIGVQGLAD FI MR PF+ E++LLN QI
Sbjct: 472 VIVKNLNKIIDINYYPVKEAENSNKRHRPIGIGVQGLADAFILMRFPFESTEAQLLNTQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYY ALE+SCE+AA GPYQTY G PVS+GILQYDMW TPTDLWDWAALKEKIA
Sbjct: 532 FETIYYAALESSCELAAEYGPYQTYAGCPVSKGILQYDMWEKTPTDLWDWAALKEKIAND 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
GVRNSLL+APMPTASTAQILGNNES EPYTSNIY RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GVRNSLLLAPMPTASTAQILGNNESIEPYTSNIYHRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
++ MK+Q+I NGSIQ I IP LK+LYKTVWEI QKT+L MAADRGA+IDQSQSLNI+
Sbjct: 652 NEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWEISQKTILKMAADRGAYIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRTKP AN IQFT++K K+ + + +E
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGANPIQFTLNKEKLKETQKTTSSEDEE- 770
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
+E+ AAM+C +N+ +C+
Sbjct: 771 ---TKERNKAAMVCSLENRHECL 790
Score = 332 bits (851), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 159/229 (69%), Positives = 186/229 (81%), Gaps = 4/229 (1%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW TPTDLWDWAALKEKIA GVRNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWEKTPTDLWDWAALKEKIANDGVRNSLLLAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I NGSIQ I IP LK+LYKTVWE
Sbjct: 626 HRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIAQNGSIQTIPAIPDDLKELYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+L MAADRGA+IDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRTKP A
Sbjct: 686 ISQKTILKMAADRGAYIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTKPGA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ K T S++E +E+ AAM+C +N+ +CL
Sbjct: 746 NPIQFTLNKEKLKE--TQKTTSSEDE--ETKERNKAAMVCSLENRHECL 790
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 73/86 (84%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA+YLEPWH DIFDFLELKKNTGKEE RARDLFY LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAMYLEPWHFDIFDFLELKKNTGKEEQRARDLFYALWIPDLFMKRVETNGDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
PN C GL + WGE+F+ LY KYE EG
Sbjct: 353 PNDCPGLDECWGEEFEKLYAKYEQEG 378
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 70/83 (84%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD FI MR PF+ E++LLN QIFETIYY ALE+SCE+AA GPYQTY G PVS
Sbjct: 503 IGVQGLADAFILMRFPFESTEAQLLNTQIFETIYYAALESSCELAAEYGPYQTYAGCPVS 562
Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
+GILQYDMW TPTDLWDWAALK
Sbjct: 563 KGILQYDMWEKTPTDLWDWAALK 585
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 42/54 (77%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
EV+E+LYN VN +PMIS + +I++ N DRLNSAIIYDRDF+YNFFGFK
Sbjct: 96 EVMEDLYNYVNPLNSRHSPMISKETLDIVLANKDRLNSAIIYDRDFSYNFFGFK 149
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +LW+AI++SQ ETGTPYMLYKDACNRKSN+QNL I+
Sbjct: 383 VVKAQQLWYAIIESQTETGTPYMLYKDACNRKSNRQNLGTIK 424
>sp|P07742|RIR1_MOUSE Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus
GN=Rrm1 PE=1 SV=2
Length = 792
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/503 (71%), Positives = 423/503 (84%), Gaps = 7/503 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY+ YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ P + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTP-EHTYDFEKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ +NLNKIID+N+YP+ EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 472 VIVRNLNKIIDINYYPIPEAHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A GPY+TYEGSPVS+GILQYDMW V PTDLWDW LKEKIAK+
Sbjct: 532 FETIYYGALEASCELAKEYGPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
++ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 NEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ + + +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKALKEEEE-- 769
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
+E+ AAM+C +N+E+C+
Sbjct: 770 ----KERNTAAMVCSLENREECL 788
Score = 325 bits (834), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW V PTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVAPTDLWDWKPLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW++ MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWNEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ + + + +E+ AAM+C +N+E+CL
Sbjct: 746 NPIQFTLNKEKLKDKEKALKEEEE------KERNTAAMVCSLENREECL 788
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 74/88 (84%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
PN C GL + WGE+F+ LY+ YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYESYEKQGRV 380
Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 80/104 (76%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A + + ++ IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASCE+A
Sbjct: 491 AHLSNKRHRPIGIGVQGLADAFILMRYPFESPEAQLLNKQIFETIYYGALEASCELAKEY 550
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY+TYEGSPVS+GILQYDMW V PTDLWDW LK YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVAPTDLWDWKPLKEKIAKYGIR 594
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 42/54 (77%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+V+E+LYN +N G +PM++ +I+M N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96 DVMEDLYNYINPHNGRHSPMVASSTLDIVMANKDRLNSAIIYDRDFSYNYFGFK 149
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424
>sp|P23921|RIR1_HUMAN Ribonucleoside-diphosphate reductase large subunit OS=Homo sapiens
GN=RRM1 PE=1 SV=1
Length = 792
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/503 (71%), Positives = 421/503 (83%), Gaps = 7/503 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ + +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
+E+ AAM+C +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788
Score = 326 bits (835), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ + + +E+ AAM+C +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A + + ++ IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LK YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKYGIR 594
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 73/88 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
PN C GL + WGE+F+ LY YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 42/54 (77%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 96 DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRDFSYNYFGFK 149
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424
>sp|Q5R919|RIR1_PONAB Ribonucleoside-diphosphate reductase large subunit OS=Pongo abelii
GN=RRM1 PE=2 SV=1
Length = 792
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/503 (70%), Positives = 421/503 (83%), Gaps = 7/503 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCS+LCTEIVEYTSKDEVAVCNLAS+ALNMY+ ++ TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSSLCTEIVEYTSKDEVAVCNLASLALNMYVT-SEHTYDFKKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ + +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKEEEE-- 769
Query: 571 IQADQEQAMAAMICRRDNKEDCI 593
+E+ AAM+C +N+++C+
Sbjct: 770 ----KERNTAAMVCSLENRDECL 788
Score = 325 bits (832), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/229 (68%), Positives = 184/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKLLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ + + +E+ AAM+C +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKEEEE------KERNTAAMVCSLENRDECL 788
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/104 (65%), Positives = 81/104 (77%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A + + ++ IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A
Sbjct: 491 ACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQ 550
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LK YG++
Sbjct: 551 GPYETYEGSPVSKGILQYDMWNVTPTDLWDWKLLKEKIAKYGIR 594
Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 73/88 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
PN C GL + WGE+F+ LY YE +G V
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRV 380
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%), Gaps = 8/84 (9%)
Query: 687 FAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746
+AIL ++I L+K+A S +V+E+LYN +N G +PM++ +I++
Sbjct: 74 YAILAARIAVSN---LHKEAKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVL 125
Query: 747 KNADRLNSAIIYDRDFNYNFFGFK 770
N DRLNSAIIYDRDF+YN+FGFK
Sbjct: 126 ANKDRLNSAIIYDRDFSYNYFGFK 149
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 38/46 (82%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V +V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I+
Sbjct: 379 RVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIK 424
>sp|Q03604|RIR1_CAEEL Ribonucleoside-diphosphate reductase large subunit
OS=Caenorhabditis elegans GN=rnr-1 PE=3 SV=1
Length = 788
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/484 (71%), Positives = 408/484 (84%), Gaps = 5/484 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF LWIPD FM+RVE D +WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMC 358
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P C GL D WGE+F+ LY KYEAEG+ + V ARKLW I+ +QIETG PY+ YKDA N
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRVRKTVKARKLWEHIVSNQIETGLPYITYKDAAN 418
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEI+EY++ DE+AVCNLASIALN Y+ P +K ++F KL +V K
Sbjct: 419 RKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNLASIALNRYVTP-EKKFDFVKLAEVTK 477
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++T+NLNKIIDVN+YPVEEARNSNMRHRPIG+GVQGLAD F+ MR PF E+R LNK+I
Sbjct: 478 VITRNLNKIIDVNYYPVEEARNSNMRHRPIGLGVQGLADCFMLMRYPFTSAEARDLNKRI 537
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYY ALEASCE+A +GPY TYEGSPVS+G LQ+DMWGVTPTD DWA L++KIAKH
Sbjct: 538 FETIYYAALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWATLRKKIAKH 597
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTASTAQILGNNES EPYTSNIYSRRVLSG+FQ+VN H+L+DLVE GLW
Sbjct: 598 GIRNSLLMAPMPTASTAQILGNNESIEPYTSNIYSRRVLSGDFQIVNPHMLKDLVERGLW 657
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
D MK++LI NNGSIQ+I+GIP +K+LY+TVWEI QK +++MAADRGA+IDQSQSLNI+
Sbjct: 658 TDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWEISQKDIIEMAADRGAYIDQSQSLNIH 717
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD----AR 566
MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA NA+QFT+DK + ++ A
Sbjct: 718 MAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAVNAVQFTVDKNALKTNQQAETPATVAE 777
Query: 567 SQEE 570
SQ+E
Sbjct: 778 SQDE 781
Score = 317 bits (812), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 142/192 (73%), Positives = 172/192 (89%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMWGVTPTD DWA L++KIAKHG+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 572 LQFDMWGVTPTDQCDWATLRKKIAKHGIRNSLLMAPMPTASTAQILGNNESIEPYTSNIY 631
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSG+FQ+VN H+L+DLVE GLW D MK++LI NNGSIQ+I+GIP +K+LY+TVWE
Sbjct: 632 SRRVLSGDFQIVNPHMLKDLVERGLWTDEMKNRLIANNGSIQNIDGIPSDIKELYRTVWE 691
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QK +++MAADRGA+IDQSQSLNI+MA+ +YA ++SMHF+GWK GLKTGMYYLRTKPA
Sbjct: 692 ISQKDIIEMAADRGAYIDQSQSLNIHMAKPSYAGITSMHFYGWKKGLKTGMYYLRTKPAV 751
Query: 949 NAIQFTIDKTKM 960
NA+QFT+DK +
Sbjct: 752 NAVQFTVDKNAL 763
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 64/88 (72%), Positives = 71/88 (80%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+F+ L+KNTG EE RARDLF LWIPD FM+RVE D +WSLMC
Sbjct: 299 RPGAFAIYLEPWHADIFEFVSLRKNTGPEEERARDLFLALWIPDLFMKRVEKDQEWSLMC 358
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLV 88
P C GL D WGE+F+ LY KYEAEG V
Sbjct: 359 PCECPGLDDCWGEEFEALYAKYEAEGRV 386
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 72/92 (78%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GVQGLAD F+ MR PF E+R LNK+IFETIYY ALEASCE+A +GPY TYEGSPVS
Sbjct: 509 LGVQGLADCFMLMRYPFTSAEARDLNKRIFETIYYAALEASCELAELNGPYSTYEGSPVS 568
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
+G LQ+DMWGVTPTD DWA L+ +G++
Sbjct: 569 KGQLQFDMWGVTPTDQCDWATLRKKIAKHGIR 600
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 65/109 (59%), Gaps = 9/109 (8%)
Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
GVT +L + AA + A + +A+L ++I ++K+N+ EV++
Sbjct: 56 GVTTVELDNLAA-ETAASMTTQHPEYALLAARIAVSN--------LHKKTNKVFSEVMKT 106
Query: 722 LYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
L+ + TG PMISD+ + II KNAD+LNSAI+YDRD++Y +FGFK
Sbjct: 107 LHEFHHPHTGKHAPMISDETWAIIEKNADKLNSAIVYDRDYSYTYFGFK 155
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+V V KLW I+ +QIETG PY+ YKDA NRKSNQQNL I+
Sbjct: 385 RVRKTVKARKLWEHIVSNQIETGLPYITYKDAANRKSNQQNLGTIK 430
>sp|Q9UW15|RIR1_NEUCR Ribonucleoside-diphosphate reductase large chain OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=rnr-1 PE=1 SV=2
Length = 929
Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/466 (68%), Positives = 391/466 (83%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL+D +G++F+ LY+KYE EGK + V A+KLW+AIL++Q ETG P+MLYKDACN
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEGKGRKTVKAQKLWYAILEAQTETGNPFMLYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQ+NLGTI+ SNLCTEI+EY++ DEVAVCNLAS+AL+ +I+ + +Y+F KL +V +
Sbjct: 413 RKSNQKNLGTIRSSNLCTEIIEYSAPDEVAVCNLASLALSAFIDYENASYDFKKLHEVTQ 472
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N YPV+EA NSNMRHRPIG+GVQGLAD F+ +R+PFD + + LN QI
Sbjct: 473 VVVRNLNKIIDINHYPVKEAHNSNMRHRPIGVGVQGLADAFLALRMPFDSDAASKLNIQI 532
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIY+ AL ASC++A GPY TYEGSPVSQGILQYDMW VTPT+LWDW ALK I K+
Sbjct: 533 FETIYHAALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKY 592
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY RRVL+GEFQVVN LLRDLVE+GLW
Sbjct: 593 GVRNSLLLAPMPTASTSQILGNNECFEPYTSNIYQRRVLAGEFQVVNPWLLRDLVEMGLW 652
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
D MK+++I GSIQ+I+ IP +K LYKTVWEI Q+T++ MAADRGAFIDQSQSLNI+
Sbjct: 653 SDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWEISQRTIVKMAADRGAFIDQSQSLNIH 712
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
M E K++SMHF GWK+GLKTGMYYLRT+ AA IQFT+D+ +
Sbjct: 713 MREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAAQPIQFTVDQEAL 758
Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 136/192 (70%), Positives = 160/192 (83%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPT+LWDW ALK I K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 567 LQYDMWNVTPTNLWDWTALKADIKKYGVRNSLLLAPMPTASTSQILGNNECFEPYTSNIY 626
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
RRVL+GEFQVVN LLRDLVE+GLW D MK+++I GSIQ+I+ IP +K LYKTVWE
Sbjct: 627 QRRVLAGEFQVVNPWLLRDLVEMGLWSDAMKNRIIAEGGSIQNIQSIPNDIKALYKTVWE 686
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I Q+T++ MAADRGAFIDQSQSLNI+M E K++SMHF GWK+GLKTGMYYLRT+ AA
Sbjct: 687 ISQRTIVKMAADRGAFIDQSQSLNIHMREPTMGKITSMHFAGWKMGLKTGMYYLRTQAAA 746
Query: 949 NAIQFTIDKTKM 960
IQFT+D+ +
Sbjct: 747 QPIQFTVDQEAL 758
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 73/86 (84%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH D+F+FL+L+KN GKEE RARDLF LWIPD FM+RVE + QW+LMC
Sbjct: 293 RPGAFAIYLEPWHADVFEFLDLRKNHGKEEVRARDLFLALWIPDLFMKRVEQNGQWTLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P+ C GL+D +G++F+ LY+KYE EG
Sbjct: 353 PHECPGLADVYGDEFEALYEKYEKEG 378
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 72/92 (78%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GVQGLAD F+ +R+PFD + + LN QIFETIY+ AL ASC++A GPY TYEGSPVS
Sbjct: 504 VGVQGLADAFLALRMPFDSDAASKLNIQIFETIYHAALTASCQLAKEQGPYATYEGSPVS 563
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
QGILQYDMW VTPT+LWDW ALK YG++
Sbjct: 564 QGILQYDMWNVTPTNLWDWTALKADIKKYGVR 595
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
++Q ++ GVT L D AA + A + +AIL ++I +++
Sbjct: 39 ITQKVISGVYGGVTTAQLDDLAA-ETAAYMTVTHPDYAILAARIAVSN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q VI ELYN VN TG +PMI+ YE +M++ D +SAI+YDRDFNY +FGFK
Sbjct: 90 TKKQWSLVISELYNYVNPRTGKHSPMIAKDVYECVMRHKDEFDSAIVYDRDFNYQYFGFK 149
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
V KLW+AIL++Q ETG P+MLYKDACNRKSNQ+NL I
Sbjct: 384 VKAQKLWYAILEAQTETGNPFMLYKDACNRKSNQKNLGTI 423
>sp|P36602|RIR1_SCHPO Ribonucleoside-diphosphate reductase large chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cdc22 PE=1 SV=2
Length = 811
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/480 (67%), Positives = 394/480 (82%), Gaps = 6/480 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA YLEPWH D+ DFLEL+K G E+FRAR++FY LWIPD FM+RVE + QW+ C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN GL+D WG++F LY+KYE E + R +PA+K+W+AIL SQ+ETG P+MLYKD+CN
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQSQVETGNPFMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQ+N+GTI+CSNLCTEIVEY+S DEVAVCNLAS+AL +I D YNF KL DV K
Sbjct: 413 RKSNQKNVGTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIK--DGKYNFQKLHDVVK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+VT+NLNKIIDVN+YPV EAR SNMRHRP+G+GVQGLAD F +RLPF+ ++ LN QI
Sbjct: 471 VVTRNLNKIIDVNYYPVPEARRSNMRHRPVGLGVQGLADAFFALRLPFESAGAKKLNIQI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIY+ ALEASCEIA +G Y++YEGSP SQGILQYDMW V PTDLWDWA LKEKIAKH
Sbjct: 531 FETIYHAALEASCEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLWDWAELKEKIAKH 590
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTAST+QILG NE FEPYTSN+Y RRVLSGEFQ+VN LL+DLVE LW
Sbjct: 591 GIRNSLLVAPMPTASTSQILGFNECFEPYTSNMYQRRVLSGEFQIVNPWLLKDLVERDLW 650
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+++MK++L++ +GSIQ I IPQ LKDLYKTVWEI QKTV+D AADRG FIDQSQSLNI+
Sbjct: 651 NEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWEISQKTVIDYAADRGPFIDQSQSLNIH 710
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+ + +Y K++SMHF+GWK GLKTGMYYLRT A+ AI+FT+D A+ +++ S EE
Sbjct: 711 LKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAASAAIKFTVDPV----ALRARNEESNEE 766
Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/206 (67%), Positives = 170/206 (82%), Gaps = 4/206 (1%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW V PTDLWDWA LKEKIAKHG+RNSLL+APMPTAST+QILG NE FEPYTSN+Y
Sbjct: 565 LQYDMWNVNPTDLWDWAELKEKIAKHGIRNSLLVAPMPTASTSQILGFNECFEPYTSNMY 624
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
RRVLSGEFQ+VN LL+DLVE LW+++MK++L++ +GSIQ I IPQ LKDLYKTVWE
Sbjct: 625 QRRVLSGEFQIVNPWLLKDLVERDLWNEDMKNKLVMLDGSIQAIPEIPQDLKDLYKTVWE 684
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTV+D AADRG FIDQSQSLNI++ + +Y K++SMHF+GWK GLKTGMYYLRT A+
Sbjct: 685 ISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYLRTMAAS 744
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEE 974
AI+FT+D A+ +++ S EE
Sbjct: 745 AAIKFTVDPV----ALRARNEESNEE 766
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA YLEPWH D+ DFLEL+K G E+FRAR++FY LWIPD FM+RVE + QW+ C
Sbjct: 293 RPGAFAAYLEPWHADVMDFLELRKTHGNEDFRAREMFYALWIPDLFMQRVERNEQWTFFC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
PN GL+D WG++F LY+KYE E
Sbjct: 353 PNEAPGLADVWGDEFVALYEKYEKE 377
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GVQGLAD F +RLPF+ ++ LN QIFETIY+ ALEASCEIA +G Y++YEGSP S
Sbjct: 502 LGVQGLADAFFALRLPFESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGSPAS 561
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
QGILQYDMW V PTDLWDWA LK +G++
Sbjct: 562 QGILQYDMWNVNPTDLWDWAELKEKIAKHGIR 593
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 43/53 (81%)
Query: 718 VIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
V+++L++ VN +T PMISDK Y+I+MK+ D L+SAIIYDRDF YNFFGFK
Sbjct: 97 VVQQLHDYVNPKTDKPAPMISDKIYDIVMKHKDELDSAIIYDRDFTYNFFGFK 149
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
K+W+AIL SQ+ETG P+MLYKD+CNRKSNQ+N+ I
Sbjct: 388 KVWYAILQSQVETGNPFMLYKDSCNRKSNQKNVGTI 423
>sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis
thaliana GN=RNR1 PE=1 SV=1
Length = 816
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/524 (62%), Positives = 402/524 (76%), Gaps = 23/524 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN GL+D WG +F+ LY KYE EGK + V A++LW+ IL SQ+ETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREGKAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN----PAD--------- 257
RKSNQQNLGTIK SNLCTEI+EYTS E AVCNLASIAL ++ P D
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLDSHPPKLAGS 472
Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
+ ++F KL +V VT NLNKIIDVN+YPVE A+ SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LDSKNRYFDFEKLAEVTATVTVNLNKIIDVNYYPVETAKTSNMRHRPIGIGVQGLADAFI 532
Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
+ +PFD E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS+GILQ DMW V
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVSKGILQPDMWNV 592
Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 IPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652
Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
F VVN HLL DL ++GLW +K++LI NGSI ++ IP LK +Y+TVWEI Q+TV+D
Sbjct: 653 FVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQRTVVD 712
Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
MAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAIKFTVD 772
Query: 553 KT--KMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIG 594
K ++A D +EE D E +A M+C N E+C+
Sbjct: 773 TAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECLA 813
Score = 296 bits (757), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/228 (61%), Positives = 177/228 (77%), Gaps = 5/228 (2%)
Query: 772 DMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
DMW V P+D WDWA L++ I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRR
Sbjct: 588 DMWNVIPSDRWDWAVLRDMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRR 647
Query: 832 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 891
VLSGEF VVN HLL DL ++GLW +K++LI NGSI ++ IP LK +Y+TVWEI Q
Sbjct: 648 VLSGEFVVVNKHLLHDLTDMGLWTPTLKNKLINENGSIVNVAEIPDDLKAIYRTVWEIKQ 707
Query: 892 KTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
+TV+DMAADRG +IDQSQSLNI+M + N+AK++S+HF+ WK GLKTGMYYLR++ AA+AI
Sbjct: 708 RTVVDMAADRGCYIDQSQSLNIHMDKPNFAKLTSLHFYTWKKGLKTGMYYLRSRAAADAI 767
Query: 952 QFTIDKT--KMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
+FT+D K ++A D +EE D E +A M+C N E+CL
Sbjct: 768 KFTVDTAMLKEKPSVAEGDKEVEEE---DNETKLAQMVCSLTNPEECL 812
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 69/86 (80%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GAFA+YLEPWH D+++FLEL+KN GKEE RARDLFY LW+PD FM RV+++ QWSL C
Sbjct: 293 RKGAFAVYLEPWHADVYEFLELRKNHGKEEHRARDLFYALWLPDLFMERVQNNGQWSLFC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
PN GL+D WG +F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGAEFETLYTKYEREG 378
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 108/177 (61%), Gaps = 15/177 (8%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD FI + +PFD E++ LNK IFETIYY AL+AS E+AAR GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASTELAARLGPYETYAGSPVS 581
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETG-TPYMLYKDACNR-- 709
+GILQ DMW V P+D WDWA L+ + G++ ++L + + T T +L + C
Sbjct: 582 KGILQPDMWNVIPSDRWDWAVLRDMISKNGVR--NSLLVAPMPTASTSQILGNNECFEPY 639
Query: 710 KSNQQNLEVIEELYNMVNK-------ETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
SN + V+ + +VNK + G TP + +K +I +N +N A I D
Sbjct: 640 TSNIYSRRVLSGEFVVVNKHLLHDLTDMGLWTPTLKNK---LINENGSIVNVAEIPD 693
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 43/54 (79%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
E I++++ VN +G ++P+I+D +EIIM+NA RL+S IIYDRDF Y++FGFK
Sbjct: 96 ETIKDMFYHVNDRSGLKSPLIADDVFEIIMQNAARLDSEIIYDRDFEYDYFGFK 149
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 36/46 (78%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
K +V +LW+ IL SQ+ETGTPYML+KD+CNRKSNQQNL I+
Sbjct: 379 KAKKVVQAQQLWYEILTSQVETGTPYMLFKDSCNRKSNQQNLGTIK 424
>sp|P50648|RIR1_PLAF4 Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1
Length = 806
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/516 (62%), Positives = 398/516 (77%), Gaps = 9/516 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ + W+LMC
Sbjct: 291 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 350
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GLS++WGE+F+ LY KYE E + V A+ LWFAIL SQIETG PYMLYKD+CN
Sbjct: 351 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPYMLYKDSCN 410
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
KSNQ+NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL +++ K +NF KL ++ K
Sbjct: 411 AKSNQKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R P++ + ++ LNK+I
Sbjct: 471 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYPYESDAAKELNKRI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
FET+YY ALE S E+A+ GPY++Y+GSP SQGILQ+DMW WDW LK KI K
Sbjct: 531 FETMYYAALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWDWDELKAKIRK 590
Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
HG+RNSLL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 591 HGLRNSLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 650
Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
WD++MK QLI +NGSIQ I IP LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 651 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGIFIDQSQSLNI 710
Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
Y+ + +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D NA+ K+A
Sbjct: 711 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 770
Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
S+E I + RR+N E C+ G
Sbjct: 771 ITREVSRETISTESTVTQNVCPLRRNNDEQCLMCSG 806
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 172/238 (72%), Gaps = 9/238 (3%)
Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
++DMW WDW LK KI KHG+RNSLL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 565 LQFDMWNAKVDNKYWDWDELKAKIRKHGLRNSLLLAPMPTASTSQILGNNESFEPYTSNI 624
Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGSIQ I IP LK+LYKTVW
Sbjct: 625 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVW 684
Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
EI QK ++DMAADRG FIDQSQSLNIY+ + +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 685 EIKQKNIIDMAADRGIFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 744
Query: 948 ANAIQFTIDK------TKMANAMASKDTRSQEEIQADQEQAMAAMIC--RRDNKEDCL 997
+AI+FT+D K+ NA + TR E + +C RR+N E CL
Sbjct: 745 TDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETISTESTVTQNVCPLRRNNDEQCL 802
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 72/87 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R G+FA+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ + W+LMC
Sbjct: 291 RKGSFAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 350
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGL 87
PN C GLS++WGE+F+ LY KYE E +
Sbjct: 351 PNECPGLSETWGEEFEKLYTKYEEENM 377
Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD F+ +R P++ + ++ LNK+IFET+YY ALE S E+A+ GPY++Y+GSP S
Sbjct: 502 IGVQGLADTFMLLRYPYESDAAKELNKRIFETMYYAALEMSVELASIHGPYESYQGSPAS 561
Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
QGILQ+DMW WDW LK +GL+
Sbjct: 562 QGILQFDMWNAKVDNKYWDWDELKAKIRKHGLR 594
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 32/41 (78%)
Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
V LWFAIL SQIETG PYMLYKD+CN KSNQ+NL I+
Sbjct: 382 VLAQDLWFAILQSQIETGVPYMLYKDSCNAKSNQKNLGTIK 422
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPY 700
G ++ + + V+QG++ G+ +L + AA + A + F+IL ++I T
Sbjct: 28 GLHELVDPARVTQGVINGMYSGIKTCELDELAA-QTCAYMATTHPDFSILAARITT---- 82
Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDR 760
D ++ ++ EV E LY + G +IS + Y+ I+ + DRLN I Y R
Sbjct: 83 ----DNLHKNTSDDVAEVAEALYTYKDVR-GRPASLISKEVYDFILLHKDRLNKEIDYTR 137
Query: 761 DFNYNFFGFK 770
DFNY++FGFK
Sbjct: 138 DFNYDYFGFK 147
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG IYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL + WG++F+ LY YE E ++ + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYEREKRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
+KSNQQNLGTIKCSNLCTEI++Y +EVAVCNLASIALNM++ D ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASIALNMFV--IDGQFDFLKLKDVVK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ +NLNKIID+N+YP+ EA SN RHRPIGIGVQGLAD FI + PFD E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A ++GPY TY GS S GILQYD+W V P+DLW+W LK+KI +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+D +K++++V+ GSIQ+ +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
+A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+ IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755
Score = 287 bits (735), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 130/192 (67%), Positives = 166/192 (86%), Gaps = 1/192 (0%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YD+W V P+DLW+W LK+KI +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQVVN HLLR L E LW+D +K++++V+ GSIQ+ +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMVDGGSIQN-TNLPEDIKRVYKTIWE 683
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
Query: 949 NAIQFTIDKTKM 960
IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 63/85 (74%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG IYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMTIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P+ C GL + WG++F+ LY YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A I + ++ IGVQGLAD FI + PFD E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY TY GS S GILQYD+W V P+DLW+W LK YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V QGI GVT +L D ++ A +AIL ++I +++
Sbjct: 43 VIQGIYN----GVTTVEL-DTLTAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ + EV+++L+N VN + G +P+IS +++ K D+LNS IIY+RDF+YN+FGFK
Sbjct: 90 TKKLFSEVMKDLFNYVNPKNGKHSPIISSITMDVVNKYKDKLNSVIIYERDFSYNYFGFK 149
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+++ +W AI++SQIETGTP++LYKDACN+KSNQQNL I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL + WG++F+ LY YE E ++ + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
+KSNQQNLGTIKCSNLCTEI++Y +EVAVCNLAS+ALNM++ D ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ +NLNKIID+N+YP+ EA SN RHRPIGIGVQGLAD FI + PFD E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A ++GPY TY GS S GILQYD+W V P+DLW+W LK+KI +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+D +K++++ + GSIQ+ +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
+A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+ IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755
Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YD+W V P+DLW+W LK+KI +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQVVN HLLR L E LW+D +K++++ + GSIQ+ +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
Query: 949 NAIQFTIDKTKM 960
IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P+ C GL + WG++F+ LY YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A I + ++ IGVQGLAD FI + PFD E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY TY GS S GILQYD+W V P+DLW+W LK YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V QGI GVT +L D A ++ A +AIL ++I +++
Sbjct: 43 VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ + EV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFK
Sbjct: 90 TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+++ +W AI++SQIETGTP++LYKDACN+KSNQQNL I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL + WG++F+ LY YE E ++ + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
+KSNQQNLGTIKCSNLCTEI++Y +EVAVCNLAS+ALNM++ D ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ +NLNKIID+N+YP+ EA SN RHRPIGIGVQGLAD FI + PFD E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A ++GPY TY GS S GILQYD+W V P+DLW+W LK+KI +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+D +K++++ + GSIQ+ +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
+A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+ IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755
Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YD+W V P+DLW+W LK+KI +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQVVN HLLR L E LW+D +K++++ + GSIQ+ +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
Query: 949 NAIQFTIDKTKM 960
IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P+ C GL + WG++F+ LY YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A I + ++ IGVQGLAD FI + PFD E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY TY GS S GILQYD+W V P+DLW+W LK YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V QGI GVT +L D A ++ A +AIL ++I +++
Sbjct: 43 VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ + EV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFK
Sbjct: 90 TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+++ +W AI++SQIETGTP++LYKDACN+KSNQQNL I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/466 (66%), Positives = 384/466 (82%), Gaps = 3/466 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C GL + WG++F+ LY YE E ++ + AR +W AI++SQIETGTP++LYKDACN
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERERRYKSIIKARVVWKAIIESQIETGTPFILYKDACN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
+KSNQQNLGTIKCSNLCTEI++Y +EVAVCNLAS+ALNM++ D ++F KLKDV K
Sbjct: 413 KKSNQQNLGTIKCSNLCTEIIQYADANEVAVCNLASVALNMFV--IDGRFDFLKLKDVVK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++ +NLNKIID+N+YP+ EA SN RHRPIGIGVQGLAD FI + PFD E++ LNK+I
Sbjct: 471 VIVRNLNKIIDINYYPIPEAEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASCE+A ++GPY TY GS S GILQYD+W V P+DLW+W LK+KI +
Sbjct: 531 FETIYYGALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTY 590
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLL+APMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQVVN HLLR L E LW
Sbjct: 591 GLRNSLLVAPMPTASTAQILGNNESVEPYTSNIYTRRVLSGEFQVVNPHLLRVLTERKLW 650
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+D +K++++ + GSIQ+ +P+ +K +YKT+WEIPQKT++ MAADRGAFIDQSQS+NI+
Sbjct: 651 NDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWEIPQKTIIKMAADRGAFIDQSQSMNIH 709
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
+A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+ IQFT+DK K+
Sbjct: 710 IADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPASAPIQFTLDKDKI 755
Score = 285 bits (730), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 129/192 (67%), Positives = 165/192 (85%), Gaps = 1/192 (0%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YD+W V P+DLW+W LK+KI +G+RNSLL+APMPTASTAQILGNNES EPYTSNIY
Sbjct: 565 LQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSLLVAPMPTASTAQILGNNESVEPYTSNIY 624
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQVVN HLLR L E LW+D +K++++ + GSIQ+ +P+ +K +YKT+WE
Sbjct: 625 TRRVLSGEFQVVNPHLLRVLTERKLWNDEIKNRIMADGGSIQN-TNLPEDIKRVYKTIWE 683
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
IPQKT++ MAADRGAFIDQSQS+NI++A+ +Y+K++SMHF+GW LGLKTGMYYLRTKPA+
Sbjct: 684 IPQKTIIKMAADRGAFIDQSQSMNIHIADPSYSKLTSMHFYGWSLGLKTGMYYLRTKPAS 743
Query: 949 NAIQFTIDKTKM 960
IQFT+DK K+
Sbjct: 744 APIQFTLDKDKI 755
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG AIYLEPWH DI FL+LKKNTG EE R RDLF LWIPD FM+RV+ D +WSLMC
Sbjct: 293 RPGVMAIYLEPWHSDIMAFLDLKKNTGNEEHRTRDLFIALWIPDLFMKRVKDDGEWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P+ C GL + WG++F+ LY YE E
Sbjct: 353 PDECPGLDNVWGDEFERLYTLYERE 377
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 75/104 (72%)
Query: 581 AMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
A I + ++ IGVQGLAD FI + PFD E++ LNK+IFETIYYGALEASCE+A ++
Sbjct: 490 AEISNKRHRPIGIGVQGLADAFILLNYPFDSLEAQDLNKKIFETIYYGALEASCELAEKE 549
Query: 641 GPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GPY TY GS S GILQYD+W V P+DLW+W LK YGL+
Sbjct: 550 GPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLR 593
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 13/120 (10%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V QGI GVT +L D A ++ A +AIL ++I +++
Sbjct: 43 VIQGIYN----GVTTVEL-DTLAAEIAATCTTQHPDYAILAARIAVSN--------LHKE 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ + EV+E+L+N VN + G +P+IS +I+ K D+LNS IIY+RDF+YN+FGFK
Sbjct: 90 TKKLFSEVMEDLFNYVNPKNGKHSPIISSITMDIVNKYKDKLNSVIIYERDFSYNYFGFK 149
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 36/43 (83%)
Query: 678 ALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+++ +W AI++SQIETGTP++LYKDACN+KSNQQNL I+
Sbjct: 382 SIIKARVVWKAIIESQIETGTPFILYKDACNKKSNQQNLGTIK 424
>sp|P21524|RIR1_YEAST Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR1 PE=1
SV=2
Length = 888
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/467 (65%), Positives = 382/467 (81%), Gaps = 5/467 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P + GLSD +G++F+ LY +YE EG+ + + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL +I ++ TYNF KL
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW P +WDW L++
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
LN+++ K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ 758
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 125/189 (66%), Positives = 153/189 (80%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMW P +WDW L++ I KHGVRNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEFQVVN +LLRDLV+LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+++MAADR +IDQS SLN+++ K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDK 957
AIQFTID+
Sbjct: 750 AAIQFTIDQ 758
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P + GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 73/93 (78%)
Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
+GVQGLAD F+ +RLPFD E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP
Sbjct: 506 ALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPA 565
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
SQGILQ+DMW P +WDW L+ + +G++
Sbjct: 566 SQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVR 598
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q I+ GVT +L + AA + A + + +A L ++I +++
Sbjct: 39 VTQRIISGVYEGVTTIELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q +V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YDRDF Y++FGFK
Sbjct: 90 TTKQFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYDRDFQYSYFGFK 149
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 35/37 (94%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI+
Sbjct: 387 KLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIK 423
>sp|P21672|RIR3_YEAST Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RNR3 PE=1
SV=4
Length = 869
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/518 (59%), Positives = 401/518 (77%), Gaps = 15/518 (2%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA++LEPWH DIFDF++++K GKEE RARDLF LWIPD FM+RV+ D W+L
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ GL D WG++F++LY +YE EG+ + + A+KLW+AIL +Q ETGTP+M+YKDACN
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREGRG-KTIKAQKLWYAILQAQTETGTPFMVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
RK+NQQNLGTIK SNLC EIVEY+S DE AVCNLASIAL ++ ++ +YNF +L
Sbjct: 412 RKTNQQNLGTIKSSNLCCEIVEYSSPDETAVCNLASIALPAFVEVSEDGKTASYNFERLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
++AK++T NLN++ID N+YPV EARNSNM+HRPI +GVQGLAD ++ +RLPF+ E++ L
Sbjct: 472 EIAKVITHNLNRVIDRNYYPVPEARNSNMKHRPIALGVQGLADTYMMLRLPFESEEAQTL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
NKQIFETIY+ LEASCE+A ++G Y T+EGSP S+GILQ+DMW P +WDW L++
Sbjct: 532 NKQIFETIYHATLEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
I KHG+RNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
LG+WDD+MK LI NGSIQ + +PQ+LK+LYKTVWEI QKT+++MAADR +IDQS S
Sbjct: 652 LGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWEISQKTIINMAADRAIYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
LN+++ + K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ ++A+ A+ A
Sbjct: 712 LNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQ-EVADQAATHIAS 770
Query: 567 SQE---------EIQADQEQAMAAMICRRDNKEDCIGV 595
E + +++A +A+ DN++D V
Sbjct: 771 VSELDRPVYVPKGTKFSEQKAASALTESSDNEKDASPV 808
Score = 276 bits (706), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/236 (55%), Positives = 175/236 (74%), Gaps = 8/236 (3%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
++DMW P +WDW L++ I KHG+RNSL +APMPTAST+QILG NE FEP TSN+Y
Sbjct: 570 LQFDMWNAKPFGMWDWETLRKDIVKHGLRNSLTMAPMPTASTSQILGYNECFEPVTSNMY 629
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEFQVVN +LLRDLV+LG+WDD+MK LI NGSIQ + +PQ+LK+LYKTVWE
Sbjct: 630 SRRVLSGEFQVVNPYLLRDLVDLGIWDDSMKQYLITQNGSIQGLPNVPQELKELYKTVWE 689
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKT+++MAADR +IDQS SLN+++ + K++SMHF+GWK GLKTGMYYLRT+ A+
Sbjct: 690 ISQKTIINMAADRAIYIDQSHSLNLFLQAPSMGKITSMHFYGWKKGLKTGMYYLRTQAAS 749
Query: 949 NAIQFTIDKT---KMANAMAS-----KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
AIQFTID+ + A +AS + + + +++A +A+ DN++D
Sbjct: 750 AAIQFTIDQEVADQAATHIASVSELDRPVYVPKGTKFSEQKAASALTESSDNEKDA 805
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA++LEPWH DIFDF++++K GKEE RARDLF LWIPD FM+RV+ D W+L
Sbjct: 293 RPGAFALFLEPWHADIFDFVDIRKTHGKEEIRARDLFPALWIPDLFMKRVQEDGPWTLFS 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P+A GL D WG++F++LY +YE EG
Sbjct: 353 PSAAPGLDDVWGDEFEELYTRYEREG 378
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 70/93 (75%)
Query: 592 CIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 651
+GVQGLAD ++ +RLPF+ E++ LNKQIFETIY+ LEASCE+A ++G Y T+EGSP
Sbjct: 506 ALGVQGLADTYMMLRLPFESEEAQTLNKQIFETIYHATLEASCELAQKEGKYSTFEGSPA 565
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
S+GILQ+DMW P +WDW L+ + +GL+
Sbjct: 566 SKGILQFDMWNAKPFGMWDWETLRKDIVKHGLR 598
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q I+ GVT +L + AA + A + + +A L ++I +++
Sbjct: 39 VTQRIISGVYSGVTTVELDNLAA-ETCAYMTTVHPDYATLAARIAISN--------LHKQ 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+ +Q +VIE+L++ +N TG PMISD+ Y I+M+N D LNSAI+YDRDF Y +FGFK
Sbjct: 90 TTKQFSKVIEDLHDWINPATGKHAPMISDEIYNIVMENKDTLNSAIVYDRDFQYTYFGFK 149
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 640 DGPYQTYEGSPVSQGILQYDMWGVTPTDLWD-WAALKVLALVYGLKLWFAILDSQIETGT 698
DGP+ + SP + L D+WG +L+ + + KLW+AIL +Q ETGT
Sbjct: 345 DGPWTLF--SPSAAPGLD-DVWGDEFEELYTRYEREGRGKTIKAQKLWYAILQAQTETGT 401
Query: 699 PYMLYKDACNRKSNQQNLEVIE 720
P+M+YKDACNRK+NQQNL I+
Sbjct: 402 PFMVYKDACNRKTNQQNLGTIK 423
>sp|O61065|RIR1_CRYPV Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium
parvum GN=RNR1 PE=3 SV=2
Length = 803
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/513 (60%), Positives = 400/513 (77%), Gaps = 6/513 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF LW+PD FM RVE D W+LMC
Sbjct: 291 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 350
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ CRGL D WG+ F LY++YE +G+ + + A+KLWF IL +QIETGTP++ YKDA N
Sbjct: 351 PDECRGLQDVWGDDFKKLYEEYEKQGRGRKTMKAQKLWFLILQAQIETGTPFICYKDAAN 410
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
KSNQ+NLGTI SNLCTEI+EYTS DEVAVCNLASI L +++ +KT++F KLK+V K
Sbjct: 411 SKSNQKNLGTIVSSNLCTEIIEYTSTDEVAVCNLASIGLPKFVDKNNKTFDFDKLKEVTK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
++T+NLNK+IDV +Y ++E + SN+RHRP+GIG+QGLAD F+ +R+P++ ++ LNKQI
Sbjct: 471 VITRNLNKLIDVGYYSLKECKKSNLRHRPLGIGIQGLADCFMMLRMPYESEGAKKLNKQI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-TDLWDWAALKEKIAK 389
FE IYY AL+ASCE+A + GPY+TY GSP S+GILQ+DMWGVTP + L DW LK++I+K
Sbjct: 531 FEVIYYAALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCDWDLLKDRISK 590
Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
HG+RNSLLI+PMPTAST+QILGNNESFEP+TSNIY RRVLSGEF VVN HLL DL+ELGL
Sbjct: 591 HGIRNSLLISPMPTASTSQILGNNESFEPFTSNIYHRRVLSGEFFVVNPHLLNDLLELGL 650
Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
WDD +K +I NNGSIQ+I IP+ +++LYKTVWEI QKTV+DMAADRG ++ QSQSLNI
Sbjct: 651 WDDRLKQNIIANNGSIQNILTIPEDIRELYKTVWEIKQKTVIDMAADRGPYVCQSQSLNI 710
Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQE 569
+M N+AK+SSMHF+GWK GLKTG+YYLRT+ A IQFT+D+ + + KD+
Sbjct: 711 HMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSATRPIQFTVDQQLLKSETKEKDSLETN 770
Query: 570 EIQADQEQAMAAMIC-----RRDNKEDCIGVQG 597
+ QA + +A + C + E+C+ G
Sbjct: 771 KRQALEPEAQKLIACPLRPTNMKDDEECMMCSG 803
Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 175/221 (79%), Gaps = 1/221 (0%)
Query: 769 FKYDMWGVTP-TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
++DMWGVTP + L DW LK++I+KHG+RNSLLI+PMPTAST+QILGNNESFEP+TSNI
Sbjct: 565 LQFDMWGVTPDSGLCDWDLLKDRISKHGIRNSLLISPMPTASTSQILGNNESFEPFTSNI 624
Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
Y RRVLSGEF VVN HLL DL+ELGLWDD +K +I NNGSIQ+I IP+ +++LYKTVW
Sbjct: 625 YHRRVLSGEFFVVNPHLLNDLLELGLWDDRLKQNIIANNGSIQNILTIPEDIRELYKTVW 684
Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
EI QKTV+DMAADRG ++ QSQSLNI+M N+AK+SSMHF+GWK GLKTG+YYLRT+ A
Sbjct: 685 EIKQKTVIDMAADRGPYVCQSQSLNIHMENANFAKLSSMHFYGWKKGLKTGIYYLRTQSA 744
Query: 948 ANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
IQFT+D+ + + KD+ + QA + +A + C
Sbjct: 745 TRPIQFTVDQQLLKSETKEKDSLETNKRQALEPEAQKLIAC 785
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 53/86 (61%), Positives = 65/86 (75%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA AIYLEPWH D+ +F+E++KN GKEE R RDLF LW+PD FM RVE D W+LMC
Sbjct: 291 RKGAIAIYLEPWHVDVVEFIEIRKNHGKEEMRCRDLFPALWVPDLFMERVEKDQDWTLMC 350
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P+ CRGL D WG+ F LY++YE +G
Sbjct: 351 PDECRGLQDVWGDDFKKLYEEYEKQG 376
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 1/93 (1%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IG+QGLAD F+ +R+P++ ++ LNKQIFE IYY AL+ASCE+A + GPY+TY GSP S
Sbjct: 502 IGIQGLADCFMMLRMPYESEGAKKLNKQIFEVIYYAALDASCELAEKYGPYETYSGSPAS 561
Query: 653 QGILQYDMWGVTP-TDLWDWAALKVLALVYGLK 684
+GILQ+DMWGVTP + L DW LK +G++
Sbjct: 562 KGILQFDMWGVTPDSGLCDWDLLKDRISKHGIR 594
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
KLWF IL +QIETGTP++ YKDA N KSNQ+NL I
Sbjct: 386 KLWFLILQAQIETGTPFICYKDAANSKSNQKNLGTI 421
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q ++ G+ ++L D A + A + F+ L ++I T L+K+ +
Sbjct: 38 VTQAVINGLYSGIKTSEL-DELASQTCAYMAATHNDFSKLAARISTSN---LHKNTSSDI 93
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+V +LYN + + G P+IS Y+ IM+N +R+NS I + +DF Y++F FK
Sbjct: 94 G-----DVASQLYNFKDNQ-GCPAPLISKPVYDFIMENRERINSKIDFSKDFEYDYFAFK 147
>sp|O15909|RIR1_TRYBB Ribonucleoside-diphosphate reductase large subunit OS=Trypanosoma
brucei brucei GN=RNR1 PE=2 SV=1
Length = 838
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 391/496 (78%), Gaps = 16/496 (3%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES W+LM
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PNT LSD +G++F DLY++YE EG+ +R + A++LWF IL+SQ+ETG P+MLYKDACN
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACN 422
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
KSNQ+NLGTIKCSNLCTEIVEYTS+DEVAVCNLASIAL ++ D +++ LK+V K
Sbjct: 423 FKSNQKNLGTIKCSNLCTEIVEYTSRDEVAVCNLASIALPRFVK--DGAFDYVALKEVTK 480
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+VT+NLN++ID N YPV EAR SN+RHRP+GIGVQGLAD F + LPF E++ LN+QI
Sbjct: 481 VVTRNLNRVIDRNHYPVCEARYSNLRHRPVGIGVQGLADAFALLSLPFAHPEAKKLNRQI 540
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-------GV------TPTDL 377
FETIY A+EAS E+A +DGPY+T++GSP S+G LQ+D+W G+ + L
Sbjct: 541 FETIYIAAVEASTELAEKDGPYETFKGSPASEGKLQFDLWDEERRIRGMNEDSVHSHCGL 600
Query: 378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437
WDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE EP+TSNIY RRVLSGEF VVN
Sbjct: 601 WDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVVN 660
Query: 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 497
HL+++L+ L LW+D+M+ ++I NGS+ I+ IP+++++LYK VWEI QK ++DMAADR
Sbjct: 661 KHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAADR 720
Query: 498 GAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
G +IDQSQSLN+++A ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D M
Sbjct: 721 GRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAMK 780
Query: 558 NAMASKDARSQEEIQA 573
+ D +S+EE+
Sbjct: 781 E-LPKPDKQSKEEVHG 795
Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 117/197 (59%), Positives = 159/197 (80%), Gaps = 1/197 (0%)
Query: 781 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 840
LWDW +LKE++ K G+RNSLLIAPMPTAST+QILGNNE EP+TSNIY RRVLSGEF VV
Sbjct: 600 LWDWDSLKERVVKVGMRNSLLIAPMPTASTSQILGNNECIEPFTSNIYVRRVLSGEFPVV 659
Query: 841 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
N HL+++L+ L LW+D+M+ ++I NGS+ I+ IP+++++LYK VWEI QK ++DMAAD
Sbjct: 660 NKHLVKELIRLRLWNDDMRRKIIALNGSVSGIKEIPERIRELYKVVWEIRQKDLIDMAAD 719
Query: 901 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 960
RG +IDQSQSLN+++A ++++SMHF+ WK GLKTGMYYLR++PAA+AI+FT+D M
Sbjct: 720 RGRYIDQSQSLNLFLATPTSSQLTSMHFYSWKKGLKTGMYYLRSQPAADAIKFTLDPKAM 779
Query: 961 ANAMASKDTRSQEEIQA 977
+ D +S+EE+
Sbjct: 780 KE-LPKPDKQSKEEVHG 795
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GAFAIYLEPWH DIF FL LKKNTGKE+ RARDLFYGLWIPD FM RVES W+LM
Sbjct: 303 RKGAFAIYLEPWHADIFGFLLLKKNTGKEDQRARDLFYGLWIPDLFMERVESHGTWTLMD 362
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
PN LSD +G++F DLY++YE EG
Sbjct: 363 PNTAPFLSDCYGQEFTDLYERYEREG 388
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 13/105 (12%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD F + LPF E++ LN+QIFETIY A+EAS E+A +DGPY+T++GSP S
Sbjct: 512 IGVQGLADAFALLSLPFAHPEAKKLNRQIFETIYIAAVEASTELAEKDGPYETFKGSPAS 571
Query: 653 QGILQYDMW-------GV------TPTDLWDWAALKVLALVYGLK 684
+G LQ+D+W G+ + LWDW +LK + G++
Sbjct: 572 EGKLQFDLWDEERRIRGMNEDSVHSHCGLWDWDSLKERVVKVGMR 616
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 659 DMWGVTPTDLWDWAAL--KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
D +G TDL++ + + + +LWF IL+SQ+ETG P+MLYKDACN KSNQ+NL
Sbjct: 371 DCYGQEFTDLYERYEREGRGVRTIQAQELWFLILESQVETGVPFMLYKDACNFKSNQKNL 430
Query: 717 EVIE 720
I+
Sbjct: 431 GTIK 434
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
A ++ + + L+ L+ V++ T P+IS++ ++I K++ L I Y+RDF++
Sbjct: 90 ALHKTTTESVLDSFRVLHEHVSQATKRHAPLISEELWDIANKHSAALQQIINYERDFDFE 149
Query: 766 FFGFK 770
+FG+K
Sbjct: 150 YFGYK 154
>sp|Q54Q71|RIR1_DICDI Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium
discoideum GN=rnrA PE=3 SV=1
Length = 870
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/471 (63%), Positives = 377/471 (80%), Gaps = 9/471 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GAFA+YLEPWH D+F+F++LKKNTGKEE RARDLFY LW+ D FM RVE + W+L C
Sbjct: 311 RKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFC 370
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQV-PARKLWFAILDSQIETGTPYMLYKDAC 209
PN GL+++ E+ LY KYEA R+V A++LWFAI++SQ+ETGTP++LYKDAC
Sbjct: 371 PNEAPGLAETHSEEHRALYLKYEATPDLPRRVIKAQELWFAIMESQVETGTPFILYKDAC 430
Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYI-------NPADKTYNF 262
N KSNQ+NLGTI SNLCTEI++YTS DE+AVCNLASIAL ++ +P +K ++
Sbjct: 431 NAKSNQKNLGTISSSNLCTEIIQYTSPDEIAVCNLASIALPKFVRQKVGSTDPKEKEFDH 490
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L ++ K++T NLN IID N+YPV EA+ SN+RHRPIGIG+QGLAD+FI+MR+PFD
Sbjct: 491 QFLFEITKLITVNLNVIIDRNYYPVAEAKTSNLRHRPIGIGIQGLADVFIKMRMPFDSVA 550
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
+ LN +I ETIY+ AL AS E+A RDG Y++++GSP S+GILQ+DMW VTP+ W+WA
Sbjct: 551 AAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSSRWNWAE 610
Query: 383 LKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLL 441
LK+ I K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNIYSRRVL+GEF +VN LL
Sbjct: 611 LKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNIYSRRVLAGEFTIVNKQLL 670
Query: 442 RDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 501
DL+ELG+W MK+Q++ GSIQ I GIP LK+LYKTVWEI Q+T++DMAADRGAFI
Sbjct: 671 EDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVWEIRQRTLIDMAADRGAFI 730
Query: 502 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
DQSQS N+++AE +AK++SMHF+ WK GLKTGMYYLRT+PAA+AIQFT+D
Sbjct: 731 DQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPAADAIQFTVD 781
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/189 (69%), Positives = 159/189 (84%), Gaps = 1/189 (0%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIA-KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
++DMW VTP+ W+WA LK+ I K G+RNSLLIAPMPTAST+QILGNNE FEPYTSNI
Sbjct: 593 LQFDMWNVTPSSRWNWAELKDNIVNKGGLRNSLLIAPMPTASTSQILGNNECFEPYTSNI 652
Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
YSRRVL+GEF +VN LL DL+ELG+W MK+Q++ GSIQ I GIP LK+LYKTVW
Sbjct: 653 YSRRVLAGEFTIVNKQLLEDLMELGIWSPEMKNQIVAARGSIQSIGGIPDDLKELYKTVW 712
Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
EI Q+T++DMAADRGAFIDQSQS N+++AE +AK++SMHF+ WK GLKTGMYYLRT+PA
Sbjct: 713 EIRQRTLIDMAADRGAFIDQSQSFNVFIAEPTFAKLTSMHFYSWKKGLKTGMYYLRTRPA 772
Query: 948 ANAIQFTID 956
A+AIQFT+D
Sbjct: 773 ADAIQFTVD 781
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 64/84 (76%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GAFA+YLEPWH D+F+F++LKKNTGKEE RARDLFY LW+ D FM RVE + W+L C
Sbjct: 311 RKGAFAVYLEPWHADVFEFIDLKKNTGKEEMRARDLFYALWVSDIFMERVEQNGDWALFC 370
Query: 61 PNACRGLSDSWGEKFDDLYKKYEA 84
PN GL+++ E+ LY KYEA
Sbjct: 371 PNEAPGLAETHSEEHRALYLKYEA 394
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 66/83 (79%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IG+QGLAD+FI+MR+PFD + LN +I ETIY+ AL AS E+A RDG Y++++GSP S
Sbjct: 530 IGIQGLADVFIKMRMPFDSVAAAKLNVEIAETIYFAALTASHELAIRDGTYESFKGSPAS 589
Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
+GILQ+DMW VTP+ W+WA LK
Sbjct: 590 KGILQFDMWNVTPSSRWNWAELK 612
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 679 LVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
++ +LWFAI++SQ+ETGTP++LYKDACN KSNQ+NL I
Sbjct: 402 VIKAQELWFAIMESQVETGTPFILYKDACNAKSNQKNLGTI 442
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+Q ++ GV T+L + AA + A + + IL ++I +++
Sbjct: 57 VAQKVVSGVFPGVKTTELDNLAA-ETAAYMSTRHPDYGILAARISVSN--------LHKQ 107
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
+++ +E +++ Y +N ++ P++S + YEI+MK+ +RL S I Y RDF+Y+FFGFK
Sbjct: 108 TSKSFVETVKKQYEFINPKSNLLAPLVSKELYEIVMKHGERLESVIDYYRDFDYDFFGFK 167
>sp|P50647|RIR1_PLAFG Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium
falciparum (isolate FCR-3 / Gambia) GN=RNR1 PE=3 SV=1
Length = 804
Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/516 (60%), Positives = 391/516 (75%), Gaps = 12/516 (2%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G++A+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ + W+LMC
Sbjct: 292 RKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 351
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GLS++WGE+F+ LY KYE E + V A+ LWFAIL SQIETG P LYKD+CN
Sbjct: 352 PNECPGLSETWGEEFEKLYTKYEEENMGKKTVLAQDLWFAILQSQIETGVPIYLYKDSCN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
K +NLGTIKCSNLC EI+EYTS DEVAVCNLASIAL +++ K +NF KL ++ K
Sbjct: 412 AKP-IKNLGTIKCSNLCCEIIEYTSPDEVAVCNLASIALCKFVDLEKKEFNFKKLYEITK 470
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
I+T+NL+KII+ N+YPV+EA+ SN RHRPIGIGVQGLAD F+ +R ++ + ++ LNK+I
Sbjct: 471 IITRNLDKIIERNYYPVKEAKTSNTRHRPIGIGVQGLADTFMLLRYLYESDAAKELNKRI 530
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV-TPTDLWDWAALKEKIAK 389
+ET+YY ALE S + + GPY++Y+GSP SQGILQ+DMW WDW LK KIAK
Sbjct: 531 YETMYYAALEMSVD-WLQSGPYESYQGSPGSQGILQFDMWNAKVDNKYWDWDELKLKIAK 589
Query: 390 HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449
G+RN LL+APMPTAST+QILGNNESFEPYTSNIY RRVLSGEF VVN HLL+DL + GL
Sbjct: 590 TGLRNLLLLAPMPTASTSQILGNNESFEPYTSNIYYRRVLSGEFFVVNPHLLKDLFDRGL 649
Query: 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 509
WD++MK QLI +NGSIQ I IP LK+LYKTVWEI QK ++DMAADRG FIDQSQSLNI
Sbjct: 650 WDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVWEIKQKNIIDMAADRGYFIDQSQSLNI 709
Query: 510 YMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR--- 566
Y+ + +AK+SSMHF+GW+ GLKTG YYLRT+ A +AI+FT+D NA+ K+A
Sbjct: 710 YIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAATDAIKFTVDTHVAKNAVKLKNADGVQ 769
Query: 567 -----SQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597
S+E IQ +Q + + +N E C+ G
Sbjct: 770 ITREVSRETIQLNQRYSKCVSF-KSNNDEQCLMCSG 804
Score = 280 bits (715), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 174/238 (73%), Gaps = 10/238 (4%)
Query: 769 FKYDMWGV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
++DMW WDW LK KIAK G+RN LL+APMPTAST+QILGNNESFEPYTSNI
Sbjct: 564 LQFDMWNAKVDNKYWDWDELKLKIAKTGLRNLLLLAPMPTASTSQILGNNESFEPYTSNI 623
Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVW 887
Y RRVLSGEF VVN HLL+DL + GLWD++MK QLI +NGSIQ I IP LK+LYKTVW
Sbjct: 624 YYRRVLSGEFFVVNPHLLKDLFDRGLWDEDMKQQLIAHNGSIQYISEIPDDLKELYKTVW 683
Query: 888 EIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947
EI QK ++DMAADRG FIDQSQSLNIY+ + +AK+SSMHF+GW+ GLKTG YYLRT+ A
Sbjct: 684 EIKQKNIIDMAADRGYFIDQSQSLNIYIQKPTFAKLSSMHFYGWEKGLKTGAYYLRTQAA 743
Query: 948 ANAIQFTIDK------TKMANAMASKDTR--SQEEIQADQEQAMAAMICRRDNKEDCL 997
+AI+FT+D K+ NA + TR S+E IQ +Q + + +N E CL
Sbjct: 744 TDAIKFTVDTHVAKNAVKLKNADGVQITREVSRETIQLNQRYSKCVSF-KSNNDEQCL 800
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 72/87 (82%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R G++A+Y+EPWH DIF+FL+L+KN GKEE RARDLFY +W+PD FM+RV+ + W+LMC
Sbjct: 292 RKGSYAVYIEPWHSDIFEFLDLRKNHGKEELRARDLFYAVWVPDLFMKRVKENKNWTLMC 351
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGL 87
PN C GLS++WGE+F+ LY KYE E +
Sbjct: 352 PNECPGLSETWGEEFEKLYTKYEEENM 378
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD F+ +R ++ + ++ LNK+I+ET+YY ALE S + + GPY++Y+GSP S
Sbjct: 502 IGVQGLADTFMLLRYLYESDAAKELNKRIYETMYYAALEMSVD-WLQSGPYESYQGSPGS 560
Query: 653 QGILQYDMWGV-TPTDLWDWAALKVLALVYGLK 684
QGILQ+DMW WDW LK+ GL+
Sbjct: 561 QGILQFDMWNAKVDNKYWDWDELKLKIAKTGLR 593
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/26 (76%), Positives = 21/26 (80%)
Query: 685 LWFAILDSQIETGTPYMLYKDACNRK 710
LWFAIL SQIETG P LYKD+CN K
Sbjct: 388 LWFAILQSQIETGVPIYLYKDSCNAK 413
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 651 VSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
V+QG++ M+ T D A + A + F+IL ++I T D ++
Sbjct: 39 VTQGVIN-GMYSSIKTCELDELAAQTCAYMATTHPDFSILAARITT--------DNLHKN 89
Query: 711 SNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
++ EV E LY + G +IS + Y+ I+ + RLN I Y FNY++FGFK
Sbjct: 90 TSDDVAEVAEALYTYKDGR-GRPASLISKEVYDFILLHKVRLNKEIDYTTHFNYDYFGFK 148
>sp|Q8SR37|RIR1_ENCCU Ribonucleoside-diphosphate reductase large chain OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0920 PE=3 SV=1
Length = 768
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 286/474 (60%), Positives = 372/474 (78%), Gaps = 7/474 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYMLYKDA 208
P+ GLSD WGE+F+ LY KYE K I + VPA+KLW AI+++QIETGTPYM YKDA
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE---KTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDA 403
Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
CNR SNQQ+LGTIK SNLC EIVEY+S +E +VCNLASI L M++ D ++F + V
Sbjct: 404 CNRLSNQQHLGTIKSSNLCAEIVEYSSGEETSVCNLASICLPMFVK--DGWFDFEAFRRV 461
Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
KI+T NLN++ID N+YPVEEAR SNMR+RPIGIGVQGLADLF +RL F+ + +R LN+
Sbjct: 462 VKILTVNLNRVIDFNYYPVEEARRSNMRNRPIGIGVQGLADLFAILRLAFESDGARSLNQ 521
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
IFE +YY A+EASCE+A ++GP+ +YEGSP+S+GI +++ G + WDW L+E+I
Sbjct: 522 DIFEAMYYSAMEASCELAEKEGPFPSYEGSPISKGIFHFELAGRKASGNWDWEGLRERIR 581
Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
+HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY+RR +GEFQ+VN HL+ DLV LG
Sbjct: 582 RHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIYTRRTHAGEFQIVNQHLVNDLVRLG 641
Query: 449 LWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508
LW MK+ +I N GSIQ+I IP +++++YKT WEI K+V+D+AADR F+DQSQSLN
Sbjct: 642 LWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWEIKMKSVIDLAADRQVFVDQSQSLN 701
Query: 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMAS 562
I++A+ Y++++SMHF+G+ GLKTGMYYLRT+P +AI+FT+DK ++S
Sbjct: 702 IFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPITSAIKFTVDKKLAEKTLSS 755
Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 112/198 (56%), Positives = 153/198 (77%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
F +++ G + WDW L+E+I +HGVRNSLLIA MPTA T+QI GNNE+FEP+ SNIY
Sbjct: 558 FHFELAGRKASGNWDWEGLRERIRRHGVRNSLLIALMPTAGTSQIFGNNEAFEPHASNIY 617
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RR +GEFQ+VN HL+ DLV LGLW MK+ +I N GSIQ+I IP +++++YKT WE
Sbjct: 618 TRRTHAGEFQIVNQHLVNDLVRLGLWSYEMKNLVIENEGSIQNITSIPHEIREIYKTAWE 677
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I K+V+D+AADR F+DQSQSLNI++A+ Y++++SMHF+G+ GLKTGMYYLRT+P
Sbjct: 678 IKMKSVIDLAADRQVFVDQSQSLNIFIAKPTYSQLTSMHFYGYHCGLKTGMYYLRTRPIT 737
Query: 949 NAIQFTIDKTKMANAMAS 966
+AI+FT+DK ++S
Sbjct: 738 SAIKFTVDKKLAEKTLSS 755
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 67/83 (80%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG+ AI+LEPWH +IFDFLEL+KNTG EEFRARD+F LWI D FM RV+++ +WSL C
Sbjct: 287 RPGSIAIFLEPWHMEIFDFLELRKNTGPEEFRARDIFTALWINDLFMERVKNNEEWSLFC 346
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GLSD WGE+F+ LY KYE
Sbjct: 347 PSQAVGLSDVWGEEFNALYCKYE 369
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 68/97 (70%)
Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
N+ IGVQGLADLF +RL F+ + +R LN+ IFE +YY A+EASCE+A ++GP+ +YE
Sbjct: 490 NRPIGIGVQGLADLFAILRLAFESDGARSLNQDIFEAMYYSAMEASCELAEKEGPFPSYE 549
Query: 648 GSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLK 684
GSP+S+GI +++ G + WDW L+ +G++
Sbjct: 550 GSPISKGIFHFELAGRKASGNWDWEGLRERIRRHGVR 586
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 652 SQGILQYDMWGVTPTDLW-DWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRK 710
SQ + D+WG L+ + +V KLW AI+++QIETGTPYM YKDACNR
Sbjct: 348 SQAVGLSDVWGEEFNALYCKYEKTISRTVVPAQKLWKAIIEAQIETGTPYMCYKDACNRL 407
Query: 711 SNQQNLEVIE 720
SNQQ+L I+
Sbjct: 408 SNQQHLGTIK 417
>sp|Q7T6Y8|RIR1_MIMIV Ribonucleoside-diphosphate reductase large subunit OS=Acanthamoeba
polyphaga mimivirus GN=RNR1 PE=3 SV=2
Length = 881
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 262/506 (51%), Positives = 364/506 (71%), Gaps = 11/506 (2%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPG+FAI++EPWHGDIF FL+LKKNTG E RARDLF GL I D FM RV D WSLMC
Sbjct: 359 RPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMC 418
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P+ C L + +G++F Y KYE+EG +++Q+ A LWF I++SQIETG PY+++KDA N
Sbjct: 419 PSQCPNLLNKYGDEFTKEYLKYESEGIYLKQIRAIDLWFKIMESQIETGVPYVMFKDAIN 478
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK--TYNFTKLKDV 268
KSNQ N+G + SNLC EIVE + K+ +VCNL+SI L ++ D+ T+N+ KL +
Sbjct: 479 DKSNQINIGVVNGSNLCCEIVEVSDKNNFSVCNLSSICLPRFVKIIDEVPTFNYQKLFKI 538
Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
++I+T+NLN IID+NFYP+++ R +N+R RPIGIGVQGLAD+F + PFD +R LN+
Sbjct: 539 SRILTRNLNNIIDINFYPLDKTRITNLRDRPIGIGVQGLADVFAMFKTPFDSEIARDLNR 598
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL---WDWAALKE 385
+IFETIYYGAL S ++A G YQTY+GSP+SQG Q+D+W + L WDW L++
Sbjct: 599 KIFETIYYGALTESNKLAREFGTYQTYQGSPISQGKFQFDLWNFDKSQLSGMWDWELLRQ 658
Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
+I HGVRNSL+ MPTAST+QI+G NE EPYT NIYSR ++GE+ V+N HL++DL+
Sbjct: 659 EILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTENIYSRSTMAGEYFVINKHLIKDLI 718
Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
ELG+W+ M D + GS+ +I IP +K +Y+TVWEIPQK++++MAADR F+DQ+Q
Sbjct: 719 ELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRTVWEIPQKSIIEMAADRAPFVDQTQ 778
Query: 506 SLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDA 565
S+N+Y+ + ++A+++S F+ W+ GLKTGMYYLR+KPA++A QF ID K+ +
Sbjct: 779 SMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSKPASSANQFGIDIDKIKEIESKNGI 838
Query: 566 RSQE------EIQADQEQAMAAMICR 585
+ QE ++ Q ++ M+CR
Sbjct: 839 KKQEDTFDLTDLTNTINQQVSGMVCR 864
Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 159/230 (69%), Gaps = 9/230 (3%)
Query: 769 FKYDMWGVTPTDL---WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
F++D+W + L WDW L+++I HGVRNSL+ MPTAST+QI+G NE EPYT
Sbjct: 635 FQFDLWNFDKSQLSGMWDWELLRQEILNHGVRNSLVTTCMPTASTSQIMGWNECIEPYTE 694
Query: 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 885
NIYSR ++GE+ V+N HL++DL+ELG+W+ M D + GS+ +I IP +K +Y+T
Sbjct: 695 NIYSRSTMAGEYFVINKHLIKDLIELGVWNSEMVDLIKYYKGSVANIPNIPDNIKAIYRT 754
Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
VWEIPQK++++MAADR F+DQ+QS+N+Y+ + ++A+++S F+ W+ GLKTGMYYLR+K
Sbjct: 755 VWEIPQKSIIEMAADRAPFVDQTQSMNLYIDKPSFARLNSCLFYAWRKGLKTGMYYLRSK 814
Query: 946 PAANAIQFTIDKTKMANAMASKDTRSQE------EIQADQEQAMAAMICR 989
PA++A QF ID K+ + + QE ++ Q ++ M+CR
Sbjct: 815 PASSANQFGIDIDKIKEIESKNGIKKQEDTFDLTDLTNTINQQVSGMVCR 864
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/87 (62%), Positives = 65/87 (74%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPG+FAI++EPWHGDIF FL+LKKNTG E RARDLF GL I D FM RV D WSLMC
Sbjct: 359 RPGSFAIFIEPWHGDIFFFLDLKKNTGAETERARDLFLGLMINDIFMERVYKDDVWSLMC 418
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGL 87
P+ C L + +G++F Y KYE+EG+
Sbjct: 419 PSQCPNLLNKYGDEFTKEYLKYESEGI 445
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD+F + PFD +R LN++IFETIYYGAL S ++A G YQTY+GSP+S
Sbjct: 572 IGVQGLADVFAMFKTPFDSEIARDLNRKIFETIYYGALTESNKLAREFGTYQTYQGSPIS 631
Query: 653 QGILQYDMWGVTPTDL---WDWAALKVLALVYGLK 684
QG Q+D+W + L WDW L+ L +G++
Sbjct: 632 QGKFQFDLWNFDKSQLSGMWDWELLRQEILNHGVR 666
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 677 LALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
L + + LWF I++SQIETG PY+++KDA N KSNQ N+ V+
Sbjct: 447 LKQIRAIDLWFKIMESQIETGVPYVMFKDAINDKSNQINIGVV 489
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 716 LEVIEELYNMVNK-ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
LE E+LYN NK E+ P+IS+ Y I K+ +N I YDRD+N FGF+
Sbjct: 163 LETAEKLYN--NKSESNKNAPIISENIYNFIKKHIKEINRVIRYDRDYNLTIFGFR 216
>sp|P0C8H8|RIR1_ASFP4 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-057 PE=3 SV=1
Length = 778
Score = 350 bits (897), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 202/508 (39%), Positives = 285/508 (56%), Gaps = 44/508 (8%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE----- 141
RPGA+A+YLE WH DIF FLE LK ++ A +L YGLW+PD FM +E
Sbjct: 265 LRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHN 324
Query: 142 -SDAQWSLMCPNTC----------RGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFA 190
D +W L P+ R ++ +F LY +Y AE ++ A+++ A
Sbjct: 325 RGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKA 384
Query: 191 ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---SKDEVAVCNLASI 247
+ I+ G PY+ +KDA NRKSN ++GTI SNLC E+ K E VCNLA++
Sbjct: 385 WFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAV 444
Query: 248 ALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307
L +I + Y++ L + + VT+NL+ IID +YP E R SNMRHRPIGIGV GL
Sbjct: 445 NLAAFIR--ENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGL 502
Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY 367
AD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S+G+LQ
Sbjct: 503 ADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQP 562
Query: 368 DMWGVTPTDL---WD---------------WAALKEKIAKHGVRNSLLIAPMPTASTAQI 409
D+W V DL W+ W L+ A GVRN L A MPTA+++
Sbjct: 563 DLW-VRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLA-AIQGVRNGYLTALMPTATSSNS 620
Query: 410 LGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIE 469
G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+ LW + ++ QL+ GSIQ I
Sbjct: 621 TGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHIL 680
Query: 470 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 529
IP +++D YKT E+ QK + AA R F+ QS SLN Y E +++ ++ GWK
Sbjct: 681 DIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKK 740
Query: 530 GLKTGMYYLRTKPAANAIQFTIDKTKMA 557
GL TG YY P A + I ++ A
Sbjct: 741 GLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 104/170 (61%)
Query: 792 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 851
A GVRN L A MPTA+++ G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+
Sbjct: 599 AIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEI 658
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 911
LW + ++ QL+ GSIQ I IP +++D YKT E+ QK + AA R F+ QS SL
Sbjct: 659 NLWTEAIQLQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSL 718
Query: 912 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
N Y E +++ ++ GWK GL TG YY P A + I ++ A
Sbjct: 719 NYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 19/104 (18%)
Query: 1 RPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE------ 51
RPGA+A+YLE WH DIF FLE LK ++ A +L YGLW+PD FM +E
Sbjct: 266 RPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 52 SDAQWSLMCPNAC----------RGLSDSWGEKFDDLYKKYEAE 85
D +W L P+ R ++ +F LY +Y AE
Sbjct: 326 GDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAE 369
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV GLAD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S
Sbjct: 497 IGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAAS 556
Query: 653 QGILQYDMW 661
+G+LQ D+W
Sbjct: 557 KGLLQPDLW 565
Score = 34.3 bits (77), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+K WF + I+ G PY+ +KDA NRKSN ++ I
Sbjct: 382 IKAWFKTV---IQVGNPYIGFKDAINRKSNLSHVGTI 415
>sp|P0C8H9|RIR1_ASFWA Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-055 PE=3 SV=1
Length = 778
Score = 349 bits (896), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 202/508 (39%), Positives = 285/508 (56%), Gaps = 44/508 (8%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE----- 141
RPGA+A+YLE WH DIF FLE LK ++ A +L YGLW+PD FM +E
Sbjct: 265 LRPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHN 324
Query: 142 -SDAQWSLMCPNTC----------RGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFA 190
D +W L P+ R ++ +F LY +Y AE ++ A+++ A
Sbjct: 325 RGDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKA 384
Query: 191 ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---SKDEVAVCNLASI 247
+ I+ G PY+ +KDA NRKSN ++GTI SNLC E+ K E VCNLA++
Sbjct: 385 WFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAV 444
Query: 248 ALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307
L +I + Y++ L + + VT+NL+ IID +YP E R SNMRHRPIGIGV GL
Sbjct: 445 NLAAFIR--ENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGL 502
Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY 367
AD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S+G+LQ
Sbjct: 503 ADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQP 562
Query: 368 DMWGVTPTDL---WD---------------WAALKEKIAKHGVRNSLLIAPMPTASTAQI 409
D+W V DL W+ W L+ A GVRN L A MPTA+++
Sbjct: 563 DLW-VRCGDLIPSWEERVAQTTQGVLTRKSWRQLRLA-AIQGVRNGYLTALMPTATSSNS 620
Query: 410 LGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIE 469
G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+ LW + ++ QL+ GSIQ I
Sbjct: 621 TGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQLQLLNAGGSIQHIL 680
Query: 470 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 529
IP +++D YKT E+ QK + AA R F+ QS SLN Y E +++ ++ GWK
Sbjct: 681 DIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKK 740
Query: 530 GLKTGMYYLRTKPAANAIQFTIDKTKMA 557
GL TG YY P A + I ++ A
Sbjct: 741 GLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 104/170 (61%)
Query: 792 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 851
A GVRN L A MPTA+++ G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+
Sbjct: 599 AIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEI 658
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 911
LW + ++ QL+ GSIQ I IP +++D YKT E+ QK + AA R F+ QS SL
Sbjct: 659 NLWTEAIQLQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSL 718
Query: 912 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
N Y E +++ ++ GWK GL TG YY P A + I ++ A
Sbjct: 719 NYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 19/104 (18%)
Query: 1 RPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE------ 51
RPGA+A+YLE WH DIF FLE LK ++ A +L YGLW+PD FM +E
Sbjct: 266 RPGAYAVYLELWHQDIFTFLEMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 52 SDAQWSLMCPNAC----------RGLSDSWGEKFDDLYKKYEAE 85
D +W L P+ R ++ +F LY +Y AE
Sbjct: 326 GDGRWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAE 369
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV GLAD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S
Sbjct: 497 IGVFGLADVFASLKIKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAAS 556
Query: 653 QGILQYDMW 661
+G+LQ D+W
Sbjct: 557 KGLLQPDLW 565
Score = 34.3 bits (77), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+K WF + I+ G PY+ +KDA NRKSN ++ I
Sbjct: 382 IKAWFKTV---IQVGNPYIGFKDAINRKSNLSHVGTI 415
>sp|P0C8H7|RIR1_ASFK5 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-057
PE=3 SV=1
Length = 779
Score = 348 bits (893), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 197/509 (38%), Positives = 283/509 (55%), Gaps = 46/509 (9%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE----- 141
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 266 LRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHD 325
Query: 142 -SDAQWSLMCPNTCRGLSDSW----------GEKFDDLYKKYEAEGKFIRQVPARKLWFA 190
D W L P+ L + +F LY +Y AE ++ A+++
Sbjct: 326 RGDGTWYLFSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAEKRYTGVTTAKEIIKE 385
Query: 191 ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---SKDEVAVCNLASI 247
+ I+ G PY+ +KDA NRKSN ++GTI SNLC EI S+ E VCNLA++
Sbjct: 386 WFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGSEAEQGVCNLAAV 445
Query: 248 ALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307
L +I + +Y++ L + A VT+NL+ IID +YP E R SNMRHRPIGIGV GL
Sbjct: 446 NLAAFIR--ENSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGL 503
Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY 367
AD+F ++ F E+ +++ I +YYGA+ S E+A G + ++ GS S+G+LQ
Sbjct: 504 ADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPGSAASKGLLQP 563
Query: 368 DMWGVTPTDLWDWAALKEKIAK-------------------HGVRNSLLIAPMPTASTAQ 408
D+W ++ W +E++A+ GVRN L A MPTA+++
Sbjct: 564 DLWVRCDDLVFSW---EERVAQTTQGVLTPKKWWQLRLAAMQGVRNGYLTALMPTATSSN 620
Query: 409 ILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI 468
G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+ LW + ++ QL+ GSIQ I
Sbjct: 621 STGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEINLWTEAIQQQLLNAGGSIQHI 680
Query: 469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWK 528
IP ++++ YKT E+ QK + AA R F+ QS SLN Y E +++ ++ GWK
Sbjct: 681 LDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWK 740
Query: 529 LGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
GL TG YY P A + I ++ A
Sbjct: 741 KGLTTGSYYCHFSPGAGTQKKIIRNSEKA 769
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 104/170 (61%)
Query: 792 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 851
A GVRN L A MPTA+++ G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+
Sbjct: 600 AMQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEI 659
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 911
LW + ++ QL+ GSIQ I IP ++++ YKT E+ QK + AA R F+ QS SL
Sbjct: 660 NLWTEAIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSL 719
Query: 912 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
N Y E +++ ++ GWK GL TG YY P A + I ++ A
Sbjct: 720 NYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 769
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Query: 1 RPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE------ 51
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 267 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHDR 326
Query: 52 SDAQWSLMCPNACRGLSDSW----------GEKFDDLYKKYEAE 85
D W L P+ L + +F LY +Y AE
Sbjct: 327 GDGTWYLFSPDQAPNLHKVFDLERSRHKNAHREFRKLYYQYVAE 370
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV GLAD+F ++ F E+ +++ I +YYGA+ S E+A G + ++ GS S
Sbjct: 498 IGVFGLADVFASFKMKFGSPEAIAMDEAIHAALYYGAMRRSVELAKEKGSHPSFPGSAAS 557
Query: 653 QGILQYDMWGVTPTDLWDW 671
+G+LQ D+W ++ W
Sbjct: 558 KGLLQPDLWVRCDDLVFSW 576
>sp|P26685|RIR1_ASFM2 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-053 PE=3 SV=1
Length = 779
Score = 347 bits (889), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 197/510 (38%), Positives = 283/510 (55%), Gaps = 48/510 (9%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE----- 141
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 266 LRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHN 325
Query: 142 -SDAQWSLMCPNTC----------RGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFA 190
D W L P+ R ++ +F LY +Y AE ++ A+++
Sbjct: 326 RGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKE 385
Query: 191 ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---SKDEVAVCNLASI 247
+ ++ G PY+ +KDA NRKSN ++GTI SNLC EI ++ E VCNLA++
Sbjct: 386 WFKTVVQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEITIPCWEGNEAEQGVCNLAAV 445
Query: 248 ALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307
L +I + +Y++ L + A VT+NL+ IID +YP E R SNMRHRPIGIGV GL
Sbjct: 446 NLAAFIR--ESSYDYRGLIEAAGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGL 503
Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY 367
AD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S+G+LQ
Sbjct: 504 ADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQP 563
Query: 368 DMW-------------------GV-TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTA 407
D+W GV TP W A GVRN L A MPTA+++
Sbjct: 564 DLWVRCGDLIPSWENRVAQTTQGVLTPKKWWQL----RLAAIQGVRNGYLTALMPTATSS 619
Query: 408 QILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467
G NE FEP+TSN+Y+RR LSGEF ++N +L+ DL E+ LW ++++ QL+ GSIQ
Sbjct: 620 NSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEINLWSEDIQQQLLNAGGSIQH 679
Query: 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGW 527
I IP ++++ YKT E+ QK + AA R F+ QS SLN Y E +++ ++ GW
Sbjct: 680 ILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGW 739
Query: 528 KLGLKTGMYYLRTKPAANAIQFTIDKTKMA 557
K GL TG YY P A + I ++ A
Sbjct: 740 KKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 769
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 105/170 (61%)
Query: 792 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 851
A GVRN L A MPTA+++ G NE FEP+TSN+Y+RR LSGEF ++N +L+ DL E+
Sbjct: 600 AIQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIILNKYLMDDLEEI 659
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 911
LW ++++ QL+ GSIQ I IP ++++ YKT E+ QK + AA R F+ QS SL
Sbjct: 660 NLWSEDIQQQLLNAGGSIQHILDIPAEIRERYKTSREMNQKILTKHAAARNPFVSQSMSL 719
Query: 912 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
N Y E +++ ++ GWK GL TG YY P A + I ++ A
Sbjct: 720 NYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 769
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 19/104 (18%)
Query: 1 RPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE------ 51
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 267 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 326
Query: 52 SDAQWSLMCPNAC----------RGLSDSWGEKFDDLYKKYEAE 85
D W L P+ R ++ +F LY +Y AE
Sbjct: 327 GDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAE 370
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 585 RRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
RR N + IGV GLAD+F +++ F E+ +++ I +YYGA+ S E+A G
Sbjct: 487 RRSNMRHRPIGIGVFGLADVFASLKMKFGSPEAIAIDEAIHAALYYGAMRRSIELAKEKG 546
Query: 642 PYQTYEGSPVSQGILQYDMW 661
+ ++ GS S+G+LQ D+W
Sbjct: 547 SHPSFPGSAASKGLLQPDLW 566
>sp|P42491|RIR1_ASFB7 Ribonucleoside-diphosphate reductase large subunit OS=African swine
fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-045 PE=3 SV=1
Length = 778
Score = 346 bits (888), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 200/508 (39%), Positives = 283/508 (55%), Gaps = 44/508 (8%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE----- 141
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 265 LRPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHN 324
Query: 142 -SDAQWSLMCPNTC----------RGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFA 190
D W L P+ R ++ +F LY +Y AE ++ A+++
Sbjct: 325 RGDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAEKRYTGVTTAKEIIKE 384
Query: 191 ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---SKDEVAVCNLASI 247
+ I+ G PY+ +KDA NRKSN ++GTI SNLC E+ K E VCNLA++
Sbjct: 385 WFKTVIQVGNPYIGFKDAINRKSNLSHVGTITNSNLCIEVTIPCWEGDKAEQGVCNLAAV 444
Query: 248 ALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307
L +I + Y++ L + + VT+NL+ IID +YP E R SNMRHRPIGIGV GL
Sbjct: 445 NLAAFIR--ENGYDYRGLIEASGNVTENLDNIIDNGYYPTEATRRSNMRHRPIGIGVFGL 502
Query: 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQY 367
AD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S+G+LQ
Sbjct: 503 ADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAASKGLLQP 562
Query: 368 DMWGVTPTDL---WD---------------WAALKEKIAKHGVRNSLLIAPMPTASTAQI 409
D+W V DL W+ W L+ A GVRN L A MPTA+++
Sbjct: 563 DLW-VRCGDLSSSWEERVAQTTQGVLTRKSWWQLRLA-AMQGVRNGYLTALMPTATSSNS 620
Query: 410 LGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIE 469
G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+ LW + ++ QL+ GSIQ I
Sbjct: 621 TGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEIDLWTEAIQQQLLNAGGSIQHIL 680
Query: 470 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 529
IP +++D YKT E+ QK + AA R F+ QS SLN Y E +++ ++ GWK
Sbjct: 681 DIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSLNYYFYEPELSQVLTVLVLGWKK 740
Query: 530 GLKTGMYYLRTKPAANAIQFTIDKTKMA 557
GL TG YY P A + I ++ A
Sbjct: 741 GLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 104/170 (61%)
Query: 792 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL 851
A GVRN L A MPTA+++ G NE FEP+TSN+Y+RR LSGEF V+N +L+ DL E+
Sbjct: 599 AMQGVRNGYLTALMPTATSSNSTGKNECFEPFTSNLYTRRTLSGEFIVLNKYLIDDLKEI 658
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSL 911
LW + ++ QL+ GSIQ I IP +++D YKT E+ QK + AA R F+ QS SL
Sbjct: 659 DLWTEAIQQQLLNAGGSIQHILDIPAEIRDRYKTSREMNQKILTKHAAARNPFVSQSMSL 718
Query: 912 NIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMA 961
N Y E +++ ++ GWK GL TG YY P A + I ++ A
Sbjct: 719 NYYFYEPELSQVLTVLVLGWKKGLTTGSYYCHFSPGAGTQKKIIRNSEKA 768
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 52/104 (50%), Gaps = 19/104 (18%)
Query: 1 RPGAFAIYLEPWHGDIFDFLE---LKKNTGKEEFRARDLFYGLWIPDEFMRRVE------ 51
RPGA+A+YLE WH DIF FL+ LK ++ A +L YGLW+PD FM +E
Sbjct: 266 RPGAYAVYLELWHQDIFTFLQMPRLKGQMAEQRLNAPNLKYGLWVPDLFMEILEDQIHNR 325
Query: 52 SDAQWSLMCPNAC----------RGLSDSWGEKFDDLYKKYEAE 85
D W L P+ R ++ +F LY +Y AE
Sbjct: 326 GDGTWYLFSPDQAPNLHKVFDLERSQHENAHREFKKLYYQYVAE 369
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 44/69 (63%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV GLAD+F +++ F E+ +++ I +YYGA+ S E+A G + ++ GS S
Sbjct: 497 IGVFGLADVFASLKMKFGSPEAIAMDEAIHAALYYGAMRRSIELAKEKGSHPSFPGSAAS 556
Query: 653 QGILQYDMW 661
+G+LQ D+W
Sbjct: 557 KGLLQPDLW 565
>sp|Q9Z6S5|RIR1_CHLPN Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
pneumoniae GN=nrdA PE=3 SV=1
Length = 1044
Score = 343 bits (879), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 279/482 (57%), Gaps = 20/482 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA +YLE WH D DFLEL+KNTG E R D+ WIPD F +R+E W+L
Sbjct: 529 RKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFS 588
Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
P+ GL +++G +F+ LY++YE E + ++V A LW +L ETG P++ +
Sbjct: 589 PDDVPGLHEAYGLEFEKLYEEYERKVESGEIRLYKKVEAEVLWRKMLSMLYETGHPWITF 648
Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
KD N +SNQ ++G ++CSNLCTEI+ S+ E AVCNL SI L +I + + KL
Sbjct: 649 KDPSNIRSNQDHVGVVRCSNLCTEILLNCSESETAVCNLGSINLVEHIR--NDKLDEEKL 706
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
K+ I + L+ +ID+NFYP EA+ +N+ HR +G+GV G D+ ++ + + E+
Sbjct: 707 KETISIAIRILDNVIDLNFYPTPEAKQANLTHRAVGLGVMGFQDVLYELNISYASQEAVE 766
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
+ + E I Y A+ AS +A G Y +Y GS +G L D V
Sbjct: 767 FSDECSEIIAYYAILASSLLAKERGTYASYSGSKWDRGYLPLDTIELLKETRGEHNVLVD 826
Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
+ DW +++ I K+G+RNS ++A PTA+ + I+G +S EP +++ + LSGEF
Sbjct: 827 TSSKKDWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEF 886
Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
+ N +L++ L ELGLWD M D L +GS+ +IE IP LK L+ T +EI + +++
Sbjct: 887 TIPNTYLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIEC 946
Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
+ R +ID SLN+Y+AE + K+S+M+ WK GLKT YYLR++ A + + ID
Sbjct: 947 TSRRQKWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSQAATSVEKSFIDI 1005
Query: 554 TK 555
K
Sbjct: 1006 NK 1007
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 112/177 (63%), Gaps = 1/177 (0%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW +++ I K+G+RNS ++A PTA+ + I+G +S EP +++ + LSGEF + N
Sbjct: 832 DWTPVRDTIQKYGMRNSQVMAIAPTATISNIIGVTQSIEPMYKHLFVKSNLSGEFTIPNT 891
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L++ L ELGLWD M D L +GS+ +IE IP LK L+ T +EI + +++ + R
Sbjct: 892 YLIKKLKELGLWDAEMLDDLKYFDGSLLEIERIPNHLKKLFLTAFEIEPEWIIECTSRRQ 951
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
+ID SLN+Y+AE + K+S+M+ WK GLKT YYLR++ A + + ID K
Sbjct: 952 KWIDMGVSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSQAATSVEKSFIDINK 1007
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 53/83 (63%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA +YLE WH D DFLEL+KNTG E R D+ WIPD F +R+E W+L
Sbjct: 529 RKGAMCVYLENWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLEKKGMWTLFS 588
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GL +++G +F+ LY++YE
Sbjct: 589 PDDVPGLHEAYGLEFEKLYEEYE 611
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV G D+ ++ + + E+ + + E I Y A+ AS +A G Y +Y GS
Sbjct: 743 LGVMGFQDVLYELNISYASQEAVEFSDECSEIIAYYAILASSLLAKERGTYASYSGSKWD 802
Query: 653 QGILQYD 659
+G L D
Sbjct: 803 RGYLPLD 809
>sp|Q9PL93|RIR1_CHLMU Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=nrdA PE=3 SV=1
Length = 1047
Score = 342 bits (878), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 277/482 (57%), Gaps = 20/482 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA +YLE WH D DFLEL+KNTG + RA D+ WIPD F +R++ W+L
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFS 590
Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
P+ GL D++GE+F+ LY++YE E + ++V A LW +L ETG P+M +
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDSGEIRLYKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
KD N +S Q + G ++CSNLCTEI+ S+ E AVCNL S+ L +I D + KL
Sbjct: 651 KDPSNIRSAQDHTGVVRCSNLCTEILLNCSETETAVCNLGSVNLVQHI--LDDGLDEEKL 708
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
+ I + L+ +ID+NFYP +EA+ +N HR IG+GV G D ++ + + E+
Sbjct: 709 SETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVE 768
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
E I Y A++ASC +A G Y +Y+GS +G+L D +
Sbjct: 769 FADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGKDNLQMD 828
Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
+ DW ++ I +HG+RN L+A PTA+ + I+G +S EP +++ + LSGEF
Sbjct: 829 TSVRKDWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 888
Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
+ N +L+ L +LG+WD +M D L +GS+ +IE +P +K ++ T +EI + +L+
Sbjct: 889 TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILEC 948
Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
A+ R +ID QSLN+Y+A+ + K+S+M+ WK GLKT YYLR+ A + +D
Sbjct: 949 ASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-TYYLRSSSATTVEKSFVDI 1007
Query: 554 TK 555
K
Sbjct: 1008 NK 1009
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW ++ I +HG+RN L+A PTA+ + I+G +S EP +++ + LSGEF + N
Sbjct: 834 DWEPIRSLIREHGMRNCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 893
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L+ L +LG+WD +M D L +GS+ +IE +P +K ++ T +EI + +L+ A+ R
Sbjct: 894 YLIEKLKKLGIWDADMLDDLKYFDGSLLEIERVPDHIKHIFLTAFEIEPEWILECASRRQ 953
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
+ID QSLN+Y+A+ + K+S+M+ WK GLKT YYLR+ A + +D K
Sbjct: 954 KWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-TYYLRSSSATTVEKSFVDINK 1009
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 55/83 (66%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA +YLE WH D DFLEL+KNTG + RA D+ WIPD F +R++ W+L
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDDRRRAHDVNTASWIPDLFFKRLQQKGSWTLFS 590
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GL D++GE+F+ LY++YE
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYE 613
Score = 40.8 bits (94), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV G D ++ + + E+ E I Y A++ASC +A G Y +Y+GS
Sbjct: 745 LGVMGFQDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWD 804
Query: 653 QGILQYD 659
+G+L D
Sbjct: 805 RGLLPID 811
>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit alpha OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=nrdA PE=3 SV=2
Length = 1047
Score = 341 bits (875), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 182/482 (37%), Positives = 276/482 (57%), Gaps = 20/482 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA +YLE WH D DFLEL+KNTG E RA D+ WIPD F +R++ W+L
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFS 590
Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
P+ GL D++GE+F+ LY++YE E + ++V A LW +L ETG P+M +
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYERKVDTGEIRLFKKVEAEDLWRKMLSMLFETGHPWMTF 650
Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
KD N +S Q + G ++CSNLCTEI+ S+ E AVCNL SI L +I + KL
Sbjct: 651 KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVQHI--VGDGLDEEKL 708
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
+ I + L+ +ID+NFYP +EA+ +N HR IG+GV G D ++ + + E+
Sbjct: 709 SETISIAVRMLDNVIDINFYPTKEAKEANFAHRAIGLGVMGFQDALYKLDISYASQEAVE 768
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM------------WGVT 373
E I Y A++ASC +A G Y +Y+GS +G+L D +
Sbjct: 769 FADYSSELISYYAIQASCLLAKERGTYSSYKGSKWDRGLLPIDTIQLLANYRGEANLQMD 828
Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
+ DW ++ + +HG+R+ L+A PTA+ + I+G +S EP +++ + LSGEF
Sbjct: 829 TSSRKDWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 888
Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
+ N +L+ L +LG+WD +M D L +GS+ +IE IP LK ++ T +EI + +++
Sbjct: 889 TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIEC 948
Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
A+ R +ID QSLN+Y+A+ + K+S+M+ WK GLKT YYLR+ A + +D
Sbjct: 949 ASRRQKWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-TYYLRSSSATTVEKSFVDI 1007
Query: 554 TK 555
K
Sbjct: 1008 NK 1009
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW ++ + +HG+R+ L+A PTA+ + I+G +S EP +++ + LSGEF + N
Sbjct: 834 DWEPIRSLVKEHGMRHCQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 893
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L+ L +LG+WD +M D L +GS+ +IE IP LK ++ T +EI + +++ A+ R
Sbjct: 894 YLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKHIFLTAFEIEPEWIIECASRRQ 953
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959
+ID QSLN+Y+A+ + K+S+M+ WK GLKT YYLR+ A + +D K
Sbjct: 954 KWIDMGQSLNLYLAQPDGKKLSNMYLTAWKKGLKT-TYYLRSSSATTVEKSFVDINK 1009
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA +YLE WH D DFLEL+KNTG E RA D+ WIPD F +R++ W+L
Sbjct: 531 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRAHDVNIASWIPDLFFKRLQQKGTWTLFS 590
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GL D++GE+F+ LY++YE
Sbjct: 591 PDDVPGLHDAYGEEFERLYEEYE 613
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV G D ++ + + E+ E I Y A++ASC +A G Y +Y+GS
Sbjct: 745 LGVMGFQDALYKLDISYASQEAVEFADYSSELISYYAIQASCLLAKERGTYSSYKGSKWD 804
Query: 653 QGILQYD 659
+G+L D
Sbjct: 805 RGLLPID 811
>sp|Q6R7H4|RIR1_OSHVF Ribonucleoside-diphosphate reductase large subunit OS=Ostreid
herpesvirus 1 (isolate France) PE=3 SV=1
Length = 835
Score = 330 bits (846), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 192/500 (38%), Positives = 283/500 (56%), Gaps = 41/500 (8%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149
RPGA A YL WH D++D+L + +G E + L GL + D FM RVE+D +WSL
Sbjct: 311 RPGAIAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLF 370
Query: 150 CPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKDA 208
PN GL + +GEKF Y+ +EA K R V ARKL+ I + TG PY+L+KDA
Sbjct: 371 SPNDVVGLEELYGEKFVRAYRAHEANPKIKRTTVSARKLFSDIANMMWSTGEPYILFKDA 430
Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
N +SN ++LGTIK SNLC EIV+Y +E+AVCNLA+I ++ ++N +F + D
Sbjct: 431 VNERSNHKHLGTIKNSNLCCEIVQYCDTNEIAVCNLATICVSNFVNVETGEIDFEGIADA 490
Query: 269 AKIVTKNLNKIID------------------------VNFYPVEEARN----SNMRHRPI 300
A + K +N +ID VN + N SN++HRP
Sbjct: 491 AGVACKGINNLIDKQNYDLGNEQLMRLADERTEEVVEVNGIKFDAKYNLVSYSNLKHRPQ 550
Query: 301 GIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTY--EGS 358
GIG+QGL D+F+++++P+D + L I E IYYGA+ S +IA GPY +Y + +
Sbjct: 551 GIGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSYYWDNN 610
Query: 359 PVSQGILQYDMWGVTPTD------LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
+G LQ+D D L++W + +K K G+ NS++ A P+AS++Q+ N
Sbjct: 611 THREGKLQFDFLEGFDRDRDLTHELFNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDN 670
Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
ES E TSN +++ + G+F ++N HL +DL +LG+WD M + N+GSIQ+IE IP
Sbjct: 671 VESIEAITSNRFTKGIKDGKFIIINKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIP 730
Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMH--FHGWKL 529
+ ++++YKT EI K V+ + A FIDQ+ S N+++ + ++ M G K+
Sbjct: 731 KNIREIYKTAREIDHKAVVKICAAIQPFIDQTISKNMFVPKNVDNPVQLIMENVILGHKM 790
Query: 530 GLKTGMYYLRTKPAANAIQF 549
LKTGMYY R PA F
Sbjct: 791 KLKTGMYYTRGIPAMKQQNF 810
Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 3/177 (1%)
Query: 780 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 839
+L++W + +K K G+ NS++ A P+AS++Q+ N ES E TSN +++ + G+F +
Sbjct: 634 ELFNWREVLKKFEKFGINNSVVTAQPPSASSSQLNDNVESIEAITSNRFTKGIKDGKFII 693
Query: 840 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 899
+N HL +DL +LG+WD M + N+GSIQ+IE IP+ ++++YKT EI K V+ + A
Sbjct: 694 INKHLQKDLEDLGMWDAQMVGDIEANDGSIQNIERIPKNIREIYKTAREIDHKAVVKICA 753
Query: 900 DRGAFIDQSQSLNIYMAE-INYAKMSSMH--FHGWKLGLKTGMYYLRTKPAANAIQF 953
FIDQ+ S N+++ + ++ M G K+ LKTGMYY R PA F
Sbjct: 754 AIQPFIDQTISKNMFVPKNVDNPVQLIMENVILGHKMKLKTGMYYTRGIPAMKQQNF 810
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 59
RPGA A YL WH D++D+L + +G E + L GL + D FM RVE+D +WSL
Sbjct: 311 RPGAIAGYLTDWHADMYDWLYSRYSGSGNEVNKRHVLNMGLVMSDLFMERVENDKEWSLF 370
Query: 60 CPNACRGLSDSWGEKFDDLYKKYEA 84
PN GL + +GEKF Y+ +EA
Sbjct: 371 SPNDVVGLEELYGEKFVRAYRAHEA 395
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTY--EGSP 650
IG+QGL D+F+++++P+D + L I E IYYGA+ S +IA GPY +Y + +
Sbjct: 552 IGMQGLHDVFMKLKIPYDSEMAFRLAALIQEAIYYGAVRESVKIAEEKGPYPSYYWDNNT 611
Query: 651 VSQGILQYD 659
+G LQ+D
Sbjct: 612 HREGKLQFD 620
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
V KL+ I + TG PY+L+KDA N +SN ++L I+
Sbjct: 404 VSARKLFSDIANMMWSTGEPYILFKDAVNERSNHKHLGTIK 444
>sp|Q77MS1|RIR1_GAHVM Ribonucleoside-diphosphate reductase large subunit OS=Gallid
herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) GN=MDV052
PE=3 SV=1
Length = 822
Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 258/485 (53%), Gaps = 24/485 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARD-LFYGLWIPD----EFMRRV--ESD 143
RP +YLEPWH DI L ++ EE R D +F LW D ++R V E +
Sbjct: 329 RPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKN 388
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
W+L + L+ E+F+ Y++ E+EG + +P R + FAI+ S TG+P++
Sbjct: 389 VIWTLF-DSRASILTKLHSEEFEKEYERLESEGLGVASIPIRDMMFAIIKSAASTGSPFI 447
Query: 204 LYKDACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD--KTY 260
L+KDACNR G I SNLCTEI++ T + VC+LASI L + D + +
Sbjct: 448 LFKDACNRHYITNTQGDAIAGSNLCTEIIQKTDANTNGVCSLASINLARCVRNIDGNRQF 507
Query: 261 NFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDC 320
+F L+ ++ T +N I++ + P E++ + R+R +GIGVQG F+ M L
Sbjct: 508 DFDALRYAVRLATVFVNAIMEGSDVPTEKSHSGRERNRSMGIGVQGFHTAFLSMGLDLCD 567
Query: 321 NESRLLNKQIFETIYYGALEASCEIAARD-GPYQTYEGSPVSQGILQYDMWG-VTPTDLW 378
+R LNK IFE + A+ SCE R P+ + S ++G L +D W V +
Sbjct: 568 ERARSLNKLIFEFMLLEAMTVSCEFCERGLPPFADFSNSYYARGRLHFDGWANVELAAVE 627
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438
+W L+++I G+ N+ IA MPTA++AQ+ +E F P SN++S+ +GE N
Sbjct: 628 EWNMLRDRIVSAGLYNAQFIALMPTAASAQVTEVSEGFSPLFSNMFSKVTSTGELLRPNI 687
Query: 439 HLLRDLVELGLWDDNMKDQLIV----NNGSIQDIEGIPQKLKDL--YKTVWEIPQKTVLD 492
L+ +L + L ++N + I N +IQ G + L YKT ++ Q ++D
Sbjct: 688 QLMEELRTIYLDNENQRLATIAALESANWNIQTALGNKPECHSLLKYKTAFDYDQALLID 747
Query: 493 MAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547
+ +DR F+DQSQS+ +++ E + +++ ++ H +K GLKTGMYY + + A NA
Sbjct: 748 LCSDRAPFVDQSQSMTLFITETADGTLLASRVMNLLLHAYKAGLKTGMYYCKIRKATNAG 807
Query: 548 QFTID 552
F D
Sbjct: 808 VFCGD 812
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 15/211 (7%)
Query: 761 DFNYNFFG---FKYDMWG-VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 816
DF+ +++ +D W V + +W L+++I G+ N+ IA MPTA++AQ+
Sbjct: 602 DFSNSYYARGRLHFDGWANVELAAVEEWNMLRDRIVSAGLYNAQFIALMPTAASAQVTEV 661
Query: 817 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV----NNGSIQDI 872
+E F P SN++S+ +GE N L+ +L + L ++N + I N +IQ
Sbjct: 662 SEGFSPLFSNMFSKVTSTGELLRPNIQLMEELRTIYLDNENQRLATIAALESANWNIQTA 721
Query: 873 EGIPQKLKDL--YKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSS 925
G + L YKT ++ Q ++D+ +DR F+DQSQS+ +++ E + +++ +
Sbjct: 722 LGNKPECHSLLKYKTAFDYDQALLIDLCSDRAPFVDQSQSMTLFITETADGTLLASRVMN 781
Query: 926 MHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956
+ H +K GLKTGMYY + + A NA F D
Sbjct: 782 LLLHAYKAGLKTGMYYCKIRKATNAGVFCGD 812
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARD-LFYGLWIPD----EFMRRV--ESD 53
RP +YLEPWH DI L ++ EE R D +F LW D ++R V E +
Sbjct: 329 RPTGICVYLEPWHADIMSALNMRGMVAAEESRRCDNVFLALWSCDLLFKRYLRHVNGEKN 388
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL----VYFRPGAFAI 97
W+L A L+ E+F+ Y++ E+EGL + R FAI
Sbjct: 389 VIWTLFDSRA-SILTKLHSEEFEKEYERLESEGLGVASIPIRDMMFAI 435
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 585 RRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD-GPY 643
R N+ IGVQG F+ M L +R LNK IFE + A+ SCE R P+
Sbjct: 541 RERNRSMGIGVQGFHTAFLSMGLDLCDERARSLNKLIFEFMLLEAMTVSCEFCERGLPPF 600
Query: 644 QTYEGSPVSQGILQYDMWG-VTPTDLWDWAALKVLALVYGL 683
+ S ++G L +D W V + +W L+ + GL
Sbjct: 601 ADFSNSYYARGRLHFDGWANVELAAVEEWNMLRDRIVSAGL 641
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 685 LWFAILDSQIETGTPYMLYKDACNR 709
+ FAI+ S TG+P++L+KDACNR
Sbjct: 431 MMFAIIKSAASTGSPFILFKDACNR 455
>sp|Q6UDJ2|RIR1_PSHV1 Ribonucleoside-diphosphate reductase large subunit OS=Psittacid
herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997)
GN=UL39 PE=3 SV=1
Length = 811
Score = 256 bits (654), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 244/484 (50%), Gaps = 23/484 (4%)
Query: 84 AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRVES 142
A V RP +Y+EPWH DI L + G EE R + F+ LW+PD FM+R E+
Sbjct: 308 ASNAVSARPSGLCVYVEPWHRDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEA 367
Query: 143 DAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPY 202
+ W+L LSD +GE+F+ Y+ E + I PAR + FA++ S + TGTP+
Sbjct: 368 NGTWTLF-DGRAAHLSDLYGEEFEKEYELLERKNVGIATYPARDVMFALIKSAVSTGTPF 426
Query: 203 MLYKDACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN------- 254
+++K A NR G +KCSNLCTEIV T + V VCNL S+ L ++
Sbjct: 427 VMFKHAVNRNYFFDMAGRAMKCSNLCTEIVHMTDDESVGVCNLTSLNLAAFVTRRNALPG 486
Query: 255 -PADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQ 313
P T++++ +D + T +N ++ ++ P++ A N R R IGIGVQG +
Sbjct: 487 TPPIGTFDYSSFRDACAVATVFINALMSLSNLPIKRATTGNERLRSIGIGVQGFHTACLL 546
Query: 314 MRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD-GPYQTYEGSPVSQGILQYDMWGV 372
D E+ N ++FE + + SC I P++ + S ++G L D W
Sbjct: 547 QGFGLDSVEACRFNGKLFEALALTTFQTSCRICELGMNPFRGFSESKYAKGWLHMDGWPA 606
Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
W L+E I +G+ N L+A MPTAS++Q+ +E P NI+S+ +GE
Sbjct: 607 RHLYFDGWDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGE 666
Query: 433 FQVVNHHLLRDLVELGLWDDNMKD---QLIVNNGSIQDIEG--IP-QKLKDLYKTVWEIP 486
+N L+ + L +D +L N S + G +P Q + T +E
Sbjct: 667 DIQLNVALMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEAD 726
Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTK 541
Q+ +L ++ADR F+D SQS +Y+ E + ++++ + +K GLKTGMYY + +
Sbjct: 727 QEHLLRLSADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVR 786
Query: 542 PAAN 545
A +
Sbjct: 787 KATD 790
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 11/177 (6%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
W L+E I +G+ N L+A MPTAS++Q+ +E P NI+S+ +GE +N
Sbjct: 614 WDRLRENIKAYGLYNCQLVALMPTASSSQLTEVSEGIHPVFGNIFSKITTTGEDIQLNVA 673
Query: 844 LLRDLVELGLWDDNMKD---QLIVNNGSIQDIEG--IP-QKLKDLYKTVWEIPQKTVLDM 897
L+ + L +D +L N S + G +P Q + T +E Q+ +L +
Sbjct: 674 LMETIECLYPNKAERRDILERLHKNKWSTRGAFGAALPSQHPLTKFDTAFEADQEHLLRL 733
Query: 898 AADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
+ADR F+D SQS +Y+ E + ++++ + +K GLKTGMYY + + A +
Sbjct: 734 SADRAPFVDHSQSTTLYVVEEDDGAVRASRVAHLLTTAFKYGLKTGMYYCKVRKATD 790
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 31/131 (23%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 59
RP +Y+EPWH DI L + G EE R + F+ LW+PD FM+R E++ W+L
Sbjct: 315 RPSGLCVYVEPWHRDIMKILRCRGVLAGNEETRCDNTFFALWMPDLFMKRFEANGTWTLF 374
Query: 60 CPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKE 119
A LSD +GE+F+ Y+ E +KN G
Sbjct: 375 DGRAAH-LSDLYGEEFEKEYELLE-----------------------------RKNVGIA 404
Query: 120 EFRARDLFYGL 130
+ ARD+ + L
Sbjct: 405 TYPARDVMFAL 415
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD-GPYQTYEGSPV 651
IGVQG + D E+ N ++FE + + SC I P++ + S
Sbjct: 535 IGVQGFHTACLLQGFGLDSVEACRFNGKLFEALALTTFQTSCRICELGMNPFRGFSESKY 594
Query: 652 SQGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
++G L D W W L+ YGL
Sbjct: 595 AKGWLHMDGWPARHLYFDGWDRLRENIKAYGL 626
>sp|P89462|RIR1_HHV2H Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain HG52) GN=UL39 PE=3 SV=1
Length = 1142
Score = 253 bits (645), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 161/494 (32%), Positives = 253/494 (51%), Gaps = 30/494 (6%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 143
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 655 RPTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 714
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
WSL +T L+D GE+F+ LY+ EA G F +P + L +AI+ S TG+P++
Sbjct: 715 VTWSLFDRDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDLAYAIVRSAATTGSPFI 773
Query: 204 LYKDACNRKSNQQNLGT-IKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
++KDA NR G I SNLCTEIV SK VCNL S+ L ++ +T++F
Sbjct: 774 MFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVS--RQTFDF 831
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
+L+D + +N +ID P + N R +GIG+QGL ++M L + E
Sbjct: 832 GRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKMGLDLESAE 891
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWG-VTPTDLWDW 380
R LN I E + A++ S + R P+ ++ S G ++ + +P +W
Sbjct: 892 FRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYEGEW 951
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
L++ + KHG+RNS IA MPTA++AQI +E F P +N++S+ GE N L
Sbjct: 952 EMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLL 1011
Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL--------YKTVWEIPQKTVLD 492
L++L E + D + +G + Q L L +KT ++ Q+ ++D
Sbjct: 1012 LKEL-ERTFGGKRLLDAM---DGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELLID 1067
Query: 493 MAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547
+ ADR ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N+
Sbjct: 1068 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATNSG 1127
Query: 548 QFTIDKTKMANAMA 561
F D + + A
Sbjct: 1128 VFAGDDNIVCTSCA 1141
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
+W L++ + KHG+RNS IA MPTA++AQI +E F P +N++S+ GE N
Sbjct: 950 EWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNT 1009
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL--------YKTVWEIPQKTV 894
LL++L E + D + +G + Q L L +KT ++ Q+ +
Sbjct: 1010 LLLKEL-ERTFGGKRLLDAM---DGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELL 1065
Query: 895 LDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
+D+ ADR ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N
Sbjct: 1066 IDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1125
Query: 950 AIQFTIDKTKMANAMA 965
+ F D + + A
Sbjct: 1126 SGVFAGDDNIVCTSCA 1141
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 53
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 655 RPTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 714
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
WSL + L+D GE+F+ LY+ EA G
Sbjct: 715 VTWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGF 748
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 584 CRRDN---KEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD 640
C R N + IG+QGL ++M L + E R LN I E + A++ S + R
Sbjct: 859 CTRGNDNLRSMGIGMQGLHTACLKMGLDLESAEFRDLNTHIAEVMLLAAMKTSNALCVRG 918
Query: 641 G-PYQTYEGSPVSQGILQYDMWG-VTPTDLWDWAALKVLALVYGLK 684
P+ ++ S G ++ + +P +W L+ + +GL+
Sbjct: 919 ARPFSHFKRSMYRAGRFHWERFSNASPRYEGEWEMLRQSMMKHGLR 964
>sp|P09853|RIR1_HHV23 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 2 (strain 333) PE=3 SV=2
Length = 1144
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/494 (32%), Positives = 253/494 (51%), Gaps = 30/494 (6%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 143
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 657 RPTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 716
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
WSL +T L+D GE+F+ LY+ EA G F +P + L +AI+ S TG+P++
Sbjct: 717 VTWSLFDRDTSMSLADFHGEEFEKLYEHLEAMG-FGETIPIQDLAYAIVRSAATTGSPFI 775
Query: 204 LYKDACNRKSNQQNLGT-IKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
++KDA NR G I SNLCTEIV +SK VCNL S+ L ++ +T++F
Sbjct: 776 MFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPSSKRSSGVCNLGSVNLARCVS--RRTFDF 833
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L+D + +N +ID P + + R +GIG+QGL ++M L + E
Sbjct: 834 GMLRDAVQACVLMVNIMIDSTLQPTPQCARGHDNLRSMGIGMQGLHTACLKMGLDLESAE 893
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWG-VTPTDLWDW 380
R LN I E + A++ S + R P+ ++ S G ++ + +P +W
Sbjct: 894 FRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMYRAGRFHWERFSNASPRYEGEW 953
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
L++ + KHG+RNS IA MPTA++AQI +E F P +N++S+ GE N L
Sbjct: 954 EMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLL 1013
Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL--------YKTVWEIPQKTVLD 492
L++L E + D + +G + Q L L +KT ++ Q+ ++D
Sbjct: 1014 LKEL-ERTFGGKRLLDAM---DGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELLID 1069
Query: 493 MAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547
+ ADR ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N+
Sbjct: 1070 LCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATNSG 1129
Query: 548 QFTIDKTKMANAMA 561
F D + + A
Sbjct: 1130 VFAGDDNIVCTSCA 1143
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 102/196 (52%), Gaps = 17/196 (8%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
+W L++ + KHG+RNS IA MPTA++AQI +E F P +N++S+ GE N
Sbjct: 952 EWEMLRQSMMKHGLRNSQFIALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNT 1011
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL--------YKTVWEIPQKTV 894
LL++L E + D + +G + Q L L +KT ++ Q+ +
Sbjct: 1012 LLLKEL-ERTFGGKRLLDAM---DGLEAKQWSVAQALPCLDPAHPLRRFKTAFDYDQELL 1067
Query: 895 LDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
+D+ ADR ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N
Sbjct: 1068 IDLCADRAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATN 1127
Query: 950 AIQFTIDKTKMANAMA 965
+ F D + + A
Sbjct: 1128 SGVFAGDDNIVCTSCA 1143
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 53
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 657 RPTGACVYLEPWHSDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 716
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
WSL + L+D GE+F+ LY+ EA G
Sbjct: 717 VTWSLFDRDTSMSLADFHGEEFEKLYEHLEAMGF 750
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPV 651
IG+QGL ++M L + E R LN I E + A++ S + R P+ ++ S
Sbjct: 873 IGMQGLHTACLKMGLDLESAEFRDLNTHIAEVMLLAAMKTSNALCVRGARPFSHFKRSMY 932
Query: 652 SQGILQYDMWG-VTPTDLWDWAALKVLALVYGLK 684
G ++ + +P +W L+ + +GL+
Sbjct: 933 RAGRFHWERFSNASPRYEGEWEMLRQSMMKHGLR 966
>sp|P08543|RIR1_HHV11 Ribonucleoside-diphosphate reductase large subunit OS=Human
herpesvirus 1 (strain 17) GN=UL39 PE=3 SV=2
Length = 1137
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 250/481 (51%), Gaps = 22/481 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 143
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 650 RPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 709
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
W+L +T L+D GE+F+ LY+ E G F Q+P ++L + I+ S TG+P++
Sbjct: 710 VTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMG-FGEQIPIQELAYGIVRSAATTGSPFV 768
Query: 204 LYKDACNRKSNQQNLGT-IKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
++KDA NR G I SNLCTEIV SK VCNL S+ L ++ +T++F
Sbjct: 769 MFKDAVNRHYIYDTQGAAIAGSNLCTEIVHPASKRSSGVCNLGSVNLARCVS--RQTFDF 826
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
+L+D + +N +ID P + N R +GIG+QGL +++ L + E
Sbjct: 827 GRLRDAVQACVLMVNIMIDSTLQPTPQCTRGNDNLRSMGIGMQGLHTACLKLGLDLESAE 886
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWG-VTPTDLWDW 380
+ LNK I E + A++ S + R P+ ++ S G ++ + P +W
Sbjct: 887 FQDLNKHIAEVMLLSAMKTSNALCVRGARPFNHFKRSMYRAGRFHWERFPDARPRYEGEW 946
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
L++ + KHG+RNS +A MPTA++AQI +E F P +N++S+ GE N L
Sbjct: 947 EMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLL 1006
Query: 441 LRDLVEL--GLWDDNMKDQLIVNNGSI-QDIEGI-PQKLKDLYKTVWEIPQKTVLDMAAD 496
L++L G + D L S+ Q + + P +KT ++ QK ++D+ AD
Sbjct: 1007 LKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCAD 1066
Query: 497 RGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551
R ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N+ F
Sbjct: 1067 RAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATNSGVFGG 1126
Query: 552 D 552
D
Sbjct: 1127 D 1127
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 27/241 (11%)
Query: 739 DKHY-EIIMKNADRLNSAIIYD--RDFNYNFFGFKYDMW-----------GVTPTDLWDW 784
+KH E+++ +A + ++A+ R FN+ FK M+ P +W
Sbjct: 891 NKHIAEVMLLSAMKTSNALCVRGARPFNH----FKRSMYRAGRFHWERFPDARPRYEGEW 946
Query: 785 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 844
L++ + KHG+RNS +A MPTA++AQI +E F P +N++S+ GE N L
Sbjct: 947 EMLRQSMMKHGLRNSQFVALMPTAASAQISDVSEGFAPLFTNLFSKVTRDGETLRPNTLL 1006
Query: 845 LRDLVEL--GLWDDNMKDQLIVNNGSI-QDIEGI-PQKLKDLYKTVWEIPQKTVLDMAAD 900
L++L G + D L S+ Q + + P +KT ++ QK ++D+ AD
Sbjct: 1007 LKELERTFSGKRLLEVMDSLDAKQWSVAQALPCLEPTHPLRRFKTAFDYDQKLLIDLCAD 1066
Query: 901 RGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955
R ++D SQS+ +Y+ E + + + + H +K GLKTGMYY + + A N+ F
Sbjct: 1067 RAPYVDHSQSMTLYVTEKADGTLPASTLVRLLVHAYKRGLKTGMYYCKVRKATNSGVFGG 1126
Query: 956 D 956
D
Sbjct: 1127 D 1127
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIPDEFMRRV------ESD 53
RP +YLEPWH D+ L +K G+E R ++F LW+PD F +R+ E +
Sbjct: 650 RPTGACVYLEPWHTDVRAVLRMKGVLAGEEAQRCDNIFSALWMPDLFFKRLIRHLDGEKN 709
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
W+L + L+D GE+F+ LY+ E G
Sbjct: 710 VTWTLFDRDTSMSLADFHGEEFEKLYQHLEVMGF 743
>sp|P50646|RIR1_BHV1C Ribonucleoside-diphosphate reductase large subunit OS=Bovine
herpesvirus 1.1 (strain Cooper) GN=UL39 PE=3 SV=1
Length = 787
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/488 (31%), Positives = 252/488 (51%), Gaps = 34/488 (6%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRVESDAQ---- 145
RP +YLEPWH D+ L ++ ++E R +LF LW+PD R + +
Sbjct: 295 RPTGICVYLEPWHCDVRAVLNMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREG 354
Query: 146 --WSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
W+L + LS G F Y++ E EG + VP + L F I+ S + TG+P++
Sbjct: 355 VVWTLF-DDRASHLSRLHGPAFTAEYERLEREGLGVETVPVQDLAFLIVRSIVMTGSPFV 413
Query: 204 LYKDACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADK---T 259
++KDACNR + G + SNLCTEIV+ S D VCNLAS+ L + +
Sbjct: 414 MFKDACNRHYHMDTAGDALTGSNLCTEIVQRASPDAHGVCNLASVNLPRCVREGEGGALA 473
Query: 260 YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFD 319
++F L A +N ++ YP E+A RHR +GIG QGL L +++ +
Sbjct: 474 FDFAALSTAAATAAIFVNAMMLGGQYPTEKAARGVARHRSLGIGFQGLHTLLLELGMDML 533
Query: 320 CNESRLLNKQIFETIYYGALEAS---CEIAARDGPYQTYEGSPVSQGILQYDMW-GVTPT 375
+R LN +I E + + S CE P++ + S ++G++ +D + GV +
Sbjct: 534 SPAARRLNVEIAERLLLAVMATSATLCEYGC--APFEDFARSKFARGLMPFDGYEGVVLS 591
Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF-- 433
WA L+EK+A+HG+ N+ +A MPT S++Q+ +E F P +N++S+ +SGE
Sbjct: 592 LPRAWARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLR 651
Query: 434 ------QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQ 487
+ + H R+ LG ++Q V ++ D+ P +KT +E Q
Sbjct: 652 PNLPLMRALRKHFTREASRLGAVRALDREQWSV-AAALGDLA--PGHPLAKFKTAFEYDQ 708
Query: 488 KTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKP 542
+ ++D+ ADR F+DQSQS+++++ E + +++ ++ + +K GLKTG+YY + +
Sbjct: 709 ERLIDLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRK 768
Query: 543 AANAIQFT 550
A N FT
Sbjct: 769 ATNNGVFT 776
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 104/184 (56%), Gaps = 16/184 (8%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF------ 837
WA L+EK+A+HG+ N+ +A MPT S++Q+ +E F P +N++S+ +SGE
Sbjct: 596 WARLREKVARHGLYNAQFVALMPTVSSSQVTEGSEGFSPVFTNMFSKVTMSGELLRPNLP 655
Query: 838 --QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVL 895
+ + H R+ LG ++Q V ++ D+ P +KT +E Q+ ++
Sbjct: 656 LMRALRKHFTREASRLGAVRALDREQWSV-AAALGDLA--PGHPLAKFKTAFEYDQERLI 712
Query: 896 DMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
D+ ADR F+DQSQS+++++ E + +++ ++ + +K GLKTG+YY + + A N
Sbjct: 713 DLCADRAPFVDQSQSMSLFVTEPMDGKVPASQIMNLLVYAYKKGLKTGLYYCKIRKATNN 772
Query: 951 IQFT 954
FT
Sbjct: 773 GVFT 776
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRVESDAQ---- 55
RP +YLEPWH D+ L ++ ++E R +LF LW+PD R + +
Sbjct: 295 RPTGICVYLEPWHCDVRAVLNMRGLLARDESTRCDNLFSCLWVPDLLFDRYLAHLEGREG 354
Query: 56 --WSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
W+L A LS G F Y++ E EGL
Sbjct: 355 VVWTLFDDRASH-LSRLHGPAFTAEYERLEREGL 387
>sp|Q4JQV6|RIR1_VZVO Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Oka vaccine) GN=ORF19
PE=3 SV=1
Length = 775
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 242/479 (50%), Gaps = 21/479 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 143
RP +Y+EPWH D+ L + ++E FR ++F LW PD F R S+
Sbjct: 286 RPTGVCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASN 345
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
QW+L N L GE F Y + E EG + VP + + F I+ S TG+P++
Sbjct: 346 VQWTLF-DNRADILRTLHGEAFTSTYLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFL 404
Query: 204 LYKDACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
++KDACNR + G I SNLCTEIV+ + VCNLASI L ++ ++N
Sbjct: 405 MFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNL 464
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L+ A+ LN ++ +P +++ +R +GIG+QGL +++
Sbjct: 465 NDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQP 524
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDG--PYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380
+R LN QI E + Y ++ S E+ G P++ + S ++G L D + W
Sbjct: 525 ARRLNVQIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPW 584
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
L++ I +G+ NS +A MPT S+AQ+ +E F P +N++S+ SGE N L
Sbjct: 585 CTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDL 644
Query: 441 LRDLVELGLWDDNMKDQLIV---NNGSIQDIEGIPQKLKDL--YKTVWEIPQKTVLDMAA 495
+ +L ++ ++ + + + N S+ G L YKT +E Q+ ++DM A
Sbjct: 645 MDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCA 704
Query: 496 DRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549
+R FIDQSQS+ +++ E I +K+ ++ +K GLKTGMYY + + A N+ F
Sbjct: 705 ERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
W L++ I +G+ NS +A MPT S+AQ+ +E F P +N++S+ SGE N
Sbjct: 584 WCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLD 643
Query: 844 LLRDLVELGLWDDNMKDQLIV---NNGSIQDIEGIPQKLKDL--YKTVWEIPQKTVLDMA 898
L+ +L ++ ++ + + + N S+ G L YKT +E Q+ ++DM
Sbjct: 644 LMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMC 703
Query: 899 ADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 953
A+R FIDQSQS+ +++ E I +K+ ++ +K GLKTGMYY + + A N+ F
Sbjct: 704 AERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 53
RP +Y+EPWH D+ L + ++E FR ++F LW PD F R S+
Sbjct: 286 RPTGVCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASN 345
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
QW+L N L GE F Y + E EGL
Sbjct: 346 VQWTLF-DNRADILRTLHGEAFTSTYLRLEREGL 378
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG--PY 643
++N+ IG+QGL +++ +R LN QI E + Y ++ S E+ G P+
Sbjct: 497 KNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYETMKTSMEMCKIGGLAPF 556
Query: 644 QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+ + S ++G L D + W L+ YGL
Sbjct: 557 KGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDICAYGL 596
>sp|P09248|RIR1_VZVD Ribonucleoside-diphosphate reductase large subunit
OS=Varicella-zoster virus (strain Dumas) GN=ORF19 PE=3
SV=1
Length = 775
Score = 243 bits (621), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 242/479 (50%), Gaps = 21/479 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 143
RP +Y+EPWH D+ L + ++E FR ++F LW PD F R S+
Sbjct: 286 RPTGVCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASN 345
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
QW+L N L GE F Y + E EG + VP + + F I+ S TG+P++
Sbjct: 346 VQWTLF-DNRADILRTLHGEAFTSTYLRLEREGLGVSSVPIQDIAFTIIRSAAVTGSPFL 404
Query: 204 LYKDACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
++KDACNR + G I SNLCTEIV+ + VCNLASI L ++ ++N
Sbjct: 405 MFKDACNRNYHMNTQGNAITGSNLCTEIVQKADAHQHGVCNLASINLTTCLSKGPVSFNL 464
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L+ A+ LN ++ +P +++ +R +GIG+QGL +++
Sbjct: 465 NDLQLTARTTVIFLNGVLAAGNFPCKKSCKGVKNNRSLGIGIQGLHTTCLRLGFDLTSQP 524
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDG--PYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380
+R LN QI E + Y ++ S E+ G P++ + S ++G L D + W
Sbjct: 525 ARRLNVQIAELMLYETMKTSMEMCKIGGLAPFKGFTESKYAKGWLHQDGFSTISYLDLPW 584
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
L++ I +G+ NS +A MPT S+AQ+ +E F P +N++S+ SGE N L
Sbjct: 585 CTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLDL 644
Query: 441 LRDLVELGLWDDNMKDQLIV---NNGSIQDIEGIPQKLKDL--YKTVWEIPQKTVLDMAA 495
+ +L ++ ++ + + + N S+ G L YKT +E Q+ ++DM A
Sbjct: 645 MDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMCA 704
Query: 496 DRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549
+R FIDQSQS+ +++ E I +K+ ++ +K GLKTGMYY + + A N+ F
Sbjct: 705 ERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
W L++ I +G+ NS +A MPT S+AQ+ +E F P +N++S+ SGE N
Sbjct: 584 WCTLRDDICAYGLYNSQFLALMPTVSSAQVTECSEGFSPIYNNMFSKVTTSGELLRPNLD 643
Query: 844 LLRDLVELGLWDDNMKDQLIV---NNGSIQDIEGIPQKLKDL--YKTVWEIPQKTVLDMA 898
L+ +L ++ ++ + + + N S+ G L YKT +E Q+ ++DM
Sbjct: 644 LMDELRDMYSCEEKRLEVINILEKNQWSVIRSFGCLSNSHPLLKYKTAFEYEQEDLVDMC 703
Query: 899 ADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 953
A+R FIDQSQS+ +++ E I +K+ ++ +K GLKTGMYY + + A N+ F
Sbjct: 704 AERAPFIDQSQSMTLFIEERPDGTIPASKIMNLLIRAYKAGLKTGMYYCKIRKATNSGLF 763
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 53
RP +Y+EPWH D+ L + ++E FR ++F LW PD F R S+
Sbjct: 286 RPTGVCVYIEPWHVDLQTVLATRGMLVRDEIFRCDNIFCCLWTPDLFFERYLSYLKGASN 345
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
QW+L N L GE F Y + E EGL
Sbjct: 346 VQWTLF-DNRADILRTLHGEAFTSTYLRLEREGL 378
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG--PY 643
++N+ IG+QGL +++ +R LN QI E + Y ++ S E+ G P+
Sbjct: 497 KNNRSLGIGIQGLHTTCLRLGFDLTSQPARRLNVQIAELMLYETMKTSMEMCKIGGLAPF 556
Query: 644 QTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+ + S ++G L D + W L+ YGL
Sbjct: 557 KGFTESKYAKGWLHQDGFSTISYLDLPWCTLRDDICAYGL 596
>sp|P28846|RIR1_EHV1B Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 1 (strain Ab4p) GN=21 PE=3 SV=1
Length = 790
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 260/488 (53%), Gaps = 40/488 (8%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 143
RP +Y EPWH DI L ++ ++E R ++F +W PD F R ES
Sbjct: 294 RPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESG 353
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
W+L +T L +G++F++ Y++ E G + +P + + F I+ S + TG+P++
Sbjct: 354 VMWTLF-DDTASHLCHMYGKEFEEEYERLEQCGFGVDSIPIQDMAFIIVRSAVMTGSPFL 412
Query: 204 LYKDACNRKSN--QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALN--MYINPADKT 259
++KDACN+ + + G I SNLCTEI+++ + + VCNLASI L + I P
Sbjct: 413 MFKDACNKHYHFDLRRKGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLAIPPPHTA 472
Query: 260 ----YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
++F L A T +N ++ YP +++ +R +G+G+QGL F+ +
Sbjct: 473 GVPYFDFAALGRAAATATIFVNSMMRAGTYPTVKSQRGVDENRSLGLGIQGLHTAFLMLD 532
Query: 316 LPFDCNESRLLNKQIFETIYYGALEAS---CEIAARDGPYQTYEGSPVSQGILQYDMW-G 371
L E+R LNKQI E + +++AS C + + P++ +E S S G L +D + G
Sbjct: 533 LDMASPEARQLNKQIAERLLLNSMKASATLCRLGMK--PFKGFEDSKYSLGELPFDSYPG 590
Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
VT + W L+ +I +HG+ NS +A MPT S++Q+ ++E F P +N++S+ +G
Sbjct: 591 VTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATG 650
Query: 432 EFQVVNHHLLRDLVEL---------GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 482
E N L+R + + L M +V G+ D+ + L +KT
Sbjct: 651 EVLRPNLLLMRTIRSIFPRECARLQALSTLEMAQWSVV--GAFGDLP-VGHPLSK-FKTA 706
Query: 483 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYY 537
+E Q+T++DM ADR F+DQSQS+++++ E + +K+ S+ H +K GLKTGMYY
Sbjct: 707 FEYDQRTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMSLLVHAYKRGLKTGMYY 766
Query: 538 LRTKPAAN 545
+ K A N
Sbjct: 767 CKIKKATN 774
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 19/204 (9%)
Query: 761 DFNYNFFGFKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES 819
D Y+ +D + GVT + W L+ +I +HG+ NS +A MPT S++Q+ ++E
Sbjct: 575 DSKYSLGELPFDSYPGVTLANRNAWRRLRTEIKQHGLYNSQFVAYMPTVSSSQVTESSEG 634
Query: 820 FEPYTSNIYSRRVLSGEFQVVNHHLLRDLVEL---------GLWDDNMKDQLIVNNGSIQ 870
F P +N++S+ +GE N L+R + + L M +V G+
Sbjct: 635 FSPVYTNLFSKVTATGEVLRPNLLLMRTIRSIFPRECARLQALSTLEMAQWSVV--GAFG 692
Query: 871 DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSS 925
D+ + L +KT +E Q+T++DM ADR F+DQSQS+++++ E + +K+ S
Sbjct: 693 DLP-VGHPLSK-FKTAFEYDQRTLIDMCADRAPFVDQSQSMSLFITEPADGKLPASKIMS 750
Query: 926 MHFHGWKLGLKTGMYYLRTKPAAN 949
+ H +K GLKTGMYY + K A N
Sbjct: 751 LLVHAYKRGLKTGMYYCKIKKATN 774
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEAS---CEIAARDGPY 643
+N+ +G+QGL F+ + L E+R LNKQI E + +++AS C + + P+
Sbjct: 513 ENRSLGLGIQGLHTAFLMLDLDMASPEARQLNKQIAERLLLNSMKASATLCRLGMK--PF 570
Query: 644 QTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGL 683
+ +E S S G L +D + GVT + W L+ +GL
Sbjct: 571 KGFEDSKYSLGELPFDSYPGVTLANRNAWRRLRTEIKQHGL 611
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 53
RP +Y EPWH DI L ++ ++E R ++F +W PD F R ES
Sbjct: 294 RPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYLDGESG 353
Query: 54 AQWSL 58
W+L
Sbjct: 354 VMWTL 358
>sp|Q9ZLF9|RIR1_HELPJ Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain J99) GN=nrdA PE=3 SV=1
Length = 788
Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 257/533 (48%), Gaps = 109/533 (20%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YLE WH D+ +F++L+KN+G E RA DLF LW+ D FM+RV DA W+L
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFD 348
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKDAC 209
P C+ L++ +G+ F+ Y +YE + K I++ + A+ LW IL + E G P++ +KD
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNA 408
Query: 210 NRKSNQQNLGTIKCSNLCTEI------------VEYT----------------------- 234
NR + + G I+ SNLCTEI +EYT
Sbjct: 409 NRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGAIEFFEEKELVTTDSNITKCA 468
Query: 235 --------------------SKD-EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVT 273
+KD + AVCNLASI L+ D +K V I+
Sbjct: 469 NKLTSTDILKGKKIYIATKVAKDGQTAVCNLASINLSKINTEED-------IKRVVPIMV 521
Query: 274 KNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFET 333
+ L+ +ID+NFYP + + +N+++R IG+GV G A + + ++ + E + E
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581
Query: 334 IYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-----MWGVTPTDLW----DWAALK 384
I Y A++ S +A G Y+ +E S S+GI D +T L+ DW L+
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLR 641
Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
EK+ +G+RN L+A PT+S + ++G ++ EP + LSG VV +L
Sbjct: 642 EKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL---- 697
Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
+ W + Y + ++I K ++ AA R +IDQ
Sbjct: 698 -NVETW--------------------------NFYTSAYDIDAKDLIKAAAVRQKWIDQG 730
Query: 505 QSLNIYMAEINYAKMSSMH---FHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
QS+N+++ I A ++H WKLGLK+ YYLR++ + + +D++
Sbjct: 731 QSINVFL-RIENASGKTLHEIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRS 781
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YLE WH D+ +F++L+KN+G E RA DLF LW+ D FM+RV DA W+L
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFMKRVLEDAMWTLFD 348
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P C+ L++ +G+ F+ Y +YE +
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKD 373
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 36/179 (20%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW L+EK+ +G+RN L+A PT+S + ++G ++ EP + LSG VV
Sbjct: 636 DWQGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP 695
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L + W + Y + ++I K ++ AA R
Sbjct: 696 NL-----NVETW--------------------------NFYTSAYDIDAKDLIKAAAVRQ 724
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMH---FHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
+IDQ QS+N+++ I A ++H WKLGLK+ YYLR++ + + +D++
Sbjct: 725 KWIDQGQSINVFL-RIENASGKTLHEIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRS 781
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
N+ +GV G A + + ++ + E + E I Y A++ S +A G Y+ +E
Sbjct: 545 NRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFE 604
Query: 648 GSPVSQGILQYD 659
S S+GI D
Sbjct: 605 NSEWSKGIFPID 616
>sp|P50642|RIR1_EHV4 Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 4 (strain 1942) PE=3 SV=1
Length = 789
Score = 236 bits (602), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 150/484 (30%), Positives = 253/484 (52%), Gaps = 32/484 (6%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 143
RP +Y EPWH DI L ++ ++E R ++F +W PD F R ES
Sbjct: 293 RPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESG 352
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
W+L +T L +G F Y++ E G I +P + + F I+ S + TG+P++
Sbjct: 353 IMWTLF-DDTASHLCHMYGNDFTREYERLERCGFGIDAIPIQDMAFIIVRSAVMTGSPFL 411
Query: 204 LYKDACNRKSN--QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALN--MYINPADKT 259
++KDACNR + + G I SNLCTEI+++ + + VCNLASI L + + P +
Sbjct: 412 MFKDACNRHYHFDMRQRGAIMGSNLCTEIIQHADETQNGVCNLASINLPKCLALPPPNIA 471
Query: 260 ----YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315
++F L A T +N ++ + YP +++ +R +G+G+QGL F+ +
Sbjct: 472 GVPYFDFAALGRAAATATIFVNAMMCASTYPTVKSQKGVEENRSLGLGIQGLHTTFLMLD 531
Query: 316 LPFDCNESRLLNKQIFETIYYGALEAS---CEIAARDGPYQTYEGSPVSQGILQYDMW-G 371
L E+ LNKQI E + +++AS C++ + P++ +E S S+G L +D +
Sbjct: 532 LDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQ--PFKGFEDSKYSRGELPFDAYPN 589
Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
VT T+ W L+ I ++G+ NS +A MPT S++Q+ ++E F P +N++S+ +G
Sbjct: 590 VTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEGFSPVYTNLFSKVTATG 649
Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLK-----DLYKTVWEIP 486
E N L+R + + + L + + G L +KT +E
Sbjct: 650 EVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDLPVGHPLSKFKTAFEYD 709
Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTK 541
Q +++M ADR AF+DQSQS+++++ E + +++ ++ H +K GLKTGMYY + K
Sbjct: 710 QTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVHAYKRGLKTGMYYCKIK 769
Query: 542 PAAN 545
A N
Sbjct: 770 KATN 773
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Query: 761 DFNYNFFGFKYDMW-GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES 819
D Y+ +D + VT T+ W L+ I ++G+ NS +A MPT S++Q+ ++E
Sbjct: 574 DSKYSRGELPFDAYPNVTLTNRNAWRRLRTDIKQYGLYNSQFVAYMPTVSSSQVTESSEG 633
Query: 820 FEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKL 879
F P +N++S+ +GE N L+R + + + L + + G L
Sbjct: 634 FSPVYTNLFSKVTATGEVLRPNVLLMRTIRSIFPQECARLQALSTLEAAKWSVVGAFGDL 693
Query: 880 K-----DLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMSSMHFH 929
+KT +E Q +++M ADR AF+DQSQS+++++ E + +++ ++ H
Sbjct: 694 PVGHPLSKFKTAFEYDQTMLINMCADRAAFVDQSQSMSLFITEPADGKLPASRIMNLLVH 753
Query: 930 GWKLGLKTGMYYLRTKPAAN 949
+K GLKTGMYY + K A N
Sbjct: 754 AYKRGLKTGMYYCKIKKATN 773
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 53
RP +Y EPWH DI L ++ ++E R ++F +W PD F R ES
Sbjct: 293 RPTGVCVYFEPWHADIRAILNMRGMLARDETVRCDNIFACMWTPDLFFDRYQRYVDGESG 352
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
W+L A L +G F Y++ E G
Sbjct: 353 IMWTLFDDTASH-LCHMYGNDFTREYERLERCGF 385
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEAS---CEIAARDGPY 643
+N+ +G+QGL F+ + L E+ LNKQI E + +++AS C++ + P+
Sbjct: 512 ENRSLGLGIQGLHTTFLMLDLDMASPEAHQLNKQIAERLLLNSMKASATLCKLGMQ--PF 569
Query: 644 QTYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYGL 683
+ +E S S+G L +D + VT T+ W L+ YGL
Sbjct: 570 KGFEDSKYSRGELPFDAYPNVTLTNRNAWRRLRTDIKQYGL 610
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 685 LWFAILDSQIETGTPYMLYKDACNR 709
+ F I+ S + TG+P++++KDACNR
Sbjct: 395 MAFIIVRSAVMTGSPFLMFKDACNR 419
>sp|P55982|RIR1_HELPY Ribonucleoside-diphosphate reductase subunit alpha OS=Helicobacter
pylori (strain ATCC 700392 / 26695) GN=nrdA PE=3 SV=1
Length = 788
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 162/533 (30%), Positives = 257/533 (48%), Gaps = 109/533 (20%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YLE WH D+ +F++L+KN+G E RA DLF LW+ D F++RV DA W+L
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFD 348
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKDAC 209
P C+ L++ +G+ F+ Y +YE + K I++ + A+ LW IL + E G P++ +KD
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKDPKIIKEYINAKDLWKKILMNYFEAGLPFLAFKDNA 408
Query: 210 NRKSNQQNLGTIKCSNLCTEI------------VEYT----------------------- 234
NR + + G I+ SNLCTEI +EYT
Sbjct: 409 NRCNPNAHAGIIRSSNLCTEIFQNTAPNHYYMQIEYTDGTIEFFEEKELVTTDSNITKCA 468
Query: 235 --------------------SKD-EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVT 273
+KD + AVCNLASI L+ D +K V I+
Sbjct: 469 NKLTSTDILKGKPIYIATKVAKDGQTAVCNLASINLSKINTEED-------IKRVVPIMV 521
Query: 274 KNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFET 333
+ L+ +ID+NFYP + + +N+++R IG+GV G A + + ++ + E + E
Sbjct: 522 RLLDNVIDLNFYPNRKVKATNLQNRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQ 581
Query: 334 IYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-----MWGVTPTDLW----DWAALK 384
I Y A++ S +A G Y+ +E S S+GI D +T L+ DW L+
Sbjct: 582 ISYHAIDTSANLAKEKGVYKDFENSEWSKGIFPIDKANNEALKLTEKGLFNHACDWQGLR 641
Query: 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDL 444
EK+ +G+RN L+A PT+S + ++G ++ EP + LSG VV +L
Sbjct: 642 EKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVPNL---- 697
Query: 445 VELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQS 504
+ W + Y + ++I K ++ AA R +IDQ
Sbjct: 698 -NVETW--------------------------NFYTSAYDIDAKDLIKAAAVRQKWIDQG 730
Query: 505 QSLNIYMAEINYAKMSSMH---FHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
QSLN+++ I A ++H WKLGLK+ YYLR++ + + +D++
Sbjct: 731 QSLNVFL-RIENASGKTLHDIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRS 781
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YLE WH D+ +F++L+KN+G E RA DLF LW+ D F++RV DA W+L
Sbjct: 289 RKGAIAVYLEIWHIDVMEFIDLRKNSGDERRRAHDLFPALWVCDLFLKRVLEDAMWTLFD 348
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAE 85
P C+ L++ +G+ F+ Y +YE +
Sbjct: 349 PYECKDLTELYGQDFEKRYLEYEKD 373
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 36/179 (20%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW L+EK+ +G+RN L+A PT+S + ++G ++ EP + LSG VV
Sbjct: 636 DWQGLREKVKANGMRNGYLMAIAPTSSISILVGTTQTIEPIYKKKWFEENLSGLIPVVVP 695
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L + W + Y + ++I K ++ AA R
Sbjct: 696 NL-----NVETW--------------------------NFYTSAYDIDAKDLIKAAAVRQ 724
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMH---FHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958
+IDQ QSLN+++ I A ++H WKLGLK+ YYLR++ + + +D++
Sbjct: 725 KWIDQGQSLNVFL-RIENASGKTLHDIYTLAWKLGLKS-TYYLRSESPSIDEKSVLDRS 781
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
N+ +GV G A + + ++ + E + E I Y A++ S +A G Y+ +E
Sbjct: 545 NRAIGLGVMGEAQMLAEHQIAWGSKEHLEKIDALMEQISYHAIDTSANLAKEKGVYKDFE 604
Query: 648 GSPVSQGILQYD 659
S S+GI D
Sbjct: 605 NSEWSKGIFPID 616
>sp|P50643|RIR1_SUHVK Ribonucleoside-diphosphate reductase large subunit OS=Suid
herpesvirus 1 (strain Kaplan) GN=RR1 PE=3 SV=1
Length = 835
Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/480 (30%), Positives = 249/480 (51%), Gaps = 23/480 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 143
RP +Y+EPWH D+ L ++ +E R ++F LW PD F +R E
Sbjct: 348 RPTGVCVYVEPWHADVRAVLNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERA 407
Query: 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203
+W+L + L+ G F Y++ E G + +P + + F I+ S + TG+P++
Sbjct: 408 VKWTLF-DDRASHLASLHGPDFAREYERLERLGLGVESLPIQDMAFLIVRSAVMTGSPFL 466
Query: 204 LYKDACNRKSNQQNLGT-IKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
+ KDACNR + G + SNLCTEIV+ + E VCNLAS+ L + A ++F
Sbjct: 467 MMKDACNRHFHTDTRGAALATSNLCTEIVQRATPGENGVCNLASVNLPACL--AGGAFDF 524
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L+ A++ +N ++ + YP + R R +GIG+QGL + + +
Sbjct: 525 AALRRAARVAAVFVNAMMRIGNYPTGASVEGVRRSRSLGIGLQGLHTTVLALDMDMADPA 584
Query: 323 SRLLNKQIFETIYYGALEASCEIAARD-GPYQTYEGSPVSQGILQYDMW-GVTPTDLWDW 380
+R LN I E + YG ++AS E+ R P+ +E S ++G++ +D + V+ + W
Sbjct: 585 ARRLNAAIAEELLYGVMDASVELCERGLRPFDGFEHSRYARGVMPFDAYERVSLREPMRW 644
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
AL+ +IA+HGV N+ +A MPT S++Q+ ++E F P +N++S+ +SGE N L
Sbjct: 645 DALRVRIAEHGVYNAQFVALMPTVSSSQVTESSEGFSPTFTNMFSKVTISGELLRPNLPL 704
Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLK-----DLYKTVWEIPQKTVLDMAA 495
+ L L + +D + + + +L +KT +E Q+ ++DM A
Sbjct: 705 METLRRLFPRECARRDAVARLERAQWSVAAAFGELPAGHPLAKFKTAFEYDQELLIDMCA 764
Query: 496 DRGAFIDQSQSLNIYMAE-----INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550
DR F+D SQS+++++ E ++ +++ + + LGLKTGMYY + + A N FT
Sbjct: 765 DRAPFVDHSQSMSLFLTEPADGKLHASRVMGLLMRAYNLGLKTGMYYCKIRKATNNGVFT 824
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 21/210 (10%)
Query: 766 FFGFKYDMW--GVTPTDLWD---------WAALKEKIAKHGVRNSLLIAPMPTASTAQIL 814
F GF++ + GV P D ++ W AL+ +IA+HGV N+ +A MPT S++Q+
Sbjct: 615 FDGFEHSRYARGVMPFDAYERVSLREPMRWDALRVRIAEHGVYNAQFVALMPTVSSSQVT 674
Query: 815 GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 874
++E F P +N++S+ +SGE N L+ L L + +D + + +
Sbjct: 675 ESSEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECARRDAVARLERAQWSVAA 734
Query: 875 IPQKLK-----DLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-----INYAKMS 924
+L +KT +E Q+ ++DM ADR F+D SQS+++++ E ++ +++
Sbjct: 735 AFGELPAGHPLAKFKTAFEYDQELLIDMCADRAPFVDHSQSMSLFLTEPADGKLHASRVM 794
Query: 925 SMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
+ + LGLKTGMYY + + A N FT
Sbjct: 795 GLLMRAYNLGLKTGMYYCKIRKATNNGVFT 824
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEE-FRARDLFYGLWIPDEFMRRV------ESD 53
RP +Y+EPWH D+ L ++ +E R ++F LW PD F +R E
Sbjct: 348 RPTGVCVYVEPWHADVRAVLNMRGMLAADESLRCDNIFSCLWTPDLFFQRYQRHLDGERA 407
Query: 54 AQWSLMCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
+W+L A L+ G F Y++ E GL
Sbjct: 408 VKWTLFDDRASH-LASLHGPDFAREYERLERLGL 440
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 15/163 (9%)
Query: 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD-GPYQ 644
R ++ IG+QGL + + + +R LN I E + YG ++AS E+ R P+
Sbjct: 557 RRSRSLGIGLQGLHTTVLALDMDMADPAARRLNAAIAEELLYGVMDASVELCERGLRPFD 616
Query: 645 TYEGSPVSQGILQYDMW-GVTPTDLWDWAALKVLALVYG------LKLWFAILDSQI--- 694
+E S ++G++ +D + V+ + W AL+V +G + L + SQ+
Sbjct: 617 GFEHSRYARGVMPFDAYERVSLREPMRWDALRVRIAEHGVYNAQFVALMPTVSSSQVTES 676
Query: 695 -ETGTPY---MLYKDACNRKSNQQNLEVIEELYNMVNKETGTR 733
E +P M K + + + NL ++E L + +E R
Sbjct: 677 SEGFSPTFTNMFSKVTISGELLRPNLPLMETLRRLFPRECARR 719
>sp|O66503|RIR1_AQUAE Ribonucleoside-diphosphate reductase subunit alpha OS=Aquifex
aeolicus (strain VF5) GN=nrdA PE=3 SV=1
Length = 801
Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 156/529 (29%), Positives = 248/529 (46%), Gaps = 118/529 (22%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G+ +I L+ WH DI DFLE+K N G E +A D+ + IPD FM+R+++ W+L+
Sbjct: 308 RKGSASITLDIWHKDILDFLEVKTNVGDERKKAHDIHPAVSIPDLFMKRLKNREDWTLID 367
Query: 151 PNTCR---------------------------------------GLSDSWGEKFDDLYKK 171
P R GL D +GE+F+ Y +
Sbjct: 368 PYWARQYITRKIYDGKYKEVKPLPGSHYYVGIKEDGTQDILEPKGLEDFYGEEFEKWYLE 427
Query: 172 YEAE--GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTE 229
E ++V + +LW +L ETG PY+ ++D NRK+ ++ G + SNLC E
Sbjct: 428 LEENLPSYAKKKVNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTGMVYSSNLCHE 487
Query: 230 IV------------------EYTSKDE---VAVCNLASIALNMYINPADKTYNFTKLKDV 268
IV E T K E + VCNL S+ L K + ++K+V
Sbjct: 488 IVQTMSPSKHEKPVLDPETGEITYKKEAGDLPVCNLGSVNLG-------KVHTEEEIKEV 540
Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
++ + L+ +I++NFY + EA +N R+R IGIGV ++ + ++ E
Sbjct: 541 LPLLVRMLDNVIEMNFYAIPEAEYTNKRYRAIGIGVSNYHYCLVKNGIKWESEEHLKFAD 600
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWD--------- 379
++FE I + AL+ S E+A G Y+ ++GS S+GIL +G + ++ +
Sbjct: 601 KLFELIAFYALKGSLELAKERGRYKLFDGSNWSKGIL----FGRSVEEIEENSRQNGNNL 656
Query: 380 -WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438
W L E+I K+G+RN+ L+A MPT ST+ ILG S +P + Y +SG V
Sbjct: 657 PWRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMSGILPQVPP 716
Query: 439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 498
V+ W YKT + I + + AA R
Sbjct: 717 E-----VDRFYWH---------------------------YKTAYTIDHEWTIRAAAVRQ 744
Query: 499 AFIDQSQSLNIYM--AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545
+IDQ+QSLN+++ I+ ++S ++ W+LGLKT +YYLR++ A +
Sbjct: 745 KWIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKT-IYYLRSRSAMD 792
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 35/168 (20%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
W L E+I K+G+RN+ L+A MPT ST+ ILG S +P + Y +SG V
Sbjct: 658 WRELAEEIKKYGIRNAYLLALMPTGSTSLILGATPSIDPIFARFYKEENMSGILPQVPPE 717
Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
V+ W YKT + I + + AA R
Sbjct: 718 -----VDRFYWH---------------------------YKTAYTIDHEWTIRAAAVRQK 745
Query: 904 FIDQSQSLNIYM--AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949
+IDQ+QSLN+++ I+ ++S ++ W+LGLKT +YYLR++ A +
Sbjct: 746 WIDQAQSLNLFVDPQNIDGPRLSRLYELAWELGLKT-IYYLRSRSAMD 792
Score = 36.6 bits (83), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV ++ + ++ E ++FE I + AL+ S E+A G Y+ ++GS S
Sbjct: 574 IGVSNYHYCLVKNGIKWESEEHLKFADKLFELIAFYALKGSLELAKERGRYKLFDGSNWS 633
Query: 653 QGIL 656
+GIL
Sbjct: 634 KGIL 637
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISD 739
V +LW +L ETG PY+ ++D NRK+ ++ ++ N+ ++ T +P +
Sbjct: 440 VNSFELWKRLLTVAFETGEPYIFFRDEANRKNPNKHTGMVYS-SNLCHEIVQTMSPSKHE 498
Query: 740 K 740
K
Sbjct: 499 K 499
>sp|O83972|RIR1_TREPA Ribonucleoside-diphosphate reductase subunit alpha OS=Treponema
pallidum (strain Nichols) GN=nrdA PE=3 SV=1
Length = 845
Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 142/483 (29%), Positives = 237/483 (49%), Gaps = 73/483 (15%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 148
R G+ A+YL+ WH DI +FL+L+ N G + +A D+F + PD F + V + A W L
Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYL 451
Query: 149 MCPN---TCRG--LSDSWGEKFDDLYKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPY 202
MCP+ T +G L D + E+++ Y + + R +P ++L +L S +ETGTP+
Sbjct: 452 MCPHEILTVKGYALEDFYAEEWEKRYWDCVKDARISKRTIPIKELVRLVLKSVVETGTPF 511
Query: 203 MLYKDACNRKSNQQNLGTIKCSNLCTEI-----------------------VEYTSKDEV 239
Y+D NR + + G I CSNLCTEI V+ T +
Sbjct: 512 AFYRDHANRANPNGHRGIIYCSNLCTEIAQNMSAINLVSVKITEVDGQKVVVQTTRPGDF 571
Query: 240 AVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRP 299
VCNLAS+ L+ DK +L++V ++ + L+ +ID+ +YPV A+ +N +R
Sbjct: 572 VVCNLASLVLSNIDLSDDK-----ELREVVRVAVRALDNVIDLTYYPVPYAQVTNAYYRA 626
Query: 300 IGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSP 359
IG+GV G + Q + ++ +E +IFE I A+EAS IA G Y + GS
Sbjct: 627 IGLGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTGSD 686
Query: 360 VSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 419
G V+ DW L+ ++A HG+RN L+A PT+ST+ I G +P
Sbjct: 687 WCTGAYFRKRGYVSE----DWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAGVDP- 741
Query: 420 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY 479
++ + L + K +++ + + QK LY
Sbjct: 742 ---------------IMKQYFLEE-----------KKGMLMPRVA----PSLSQKTCPLY 771
Query: 480 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYL 538
K+ + Q+ + A R IDQ+QS+N+Y+ + ++ ++ + W++G+K+ +YY+
Sbjct: 772 KSAHAVEQRWSIRAAGLRQRHIDQAQSVNLYITTDFTLKQVLDLYVYAWEVGMKS-LYYV 830
Query: 539 RTK 541
R++
Sbjct: 831 RSQ 833
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 58
R G+ A+YL+ WH DI +FL+L+ N G + +A D+F + PD F + V + A W L
Sbjct: 392 RQGSVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKTVRDNLGASWYL 451
Query: 59 MCPN---ACRG--LSDSWGEKFDDLY 79
MCP+ +G L D + E+++ Y
Sbjct: 452 MCPHEILTVKGYALEDFYAEEWEKRY 477
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW L+ ++A HG+RN L+A PT+ST+ I G +P ++
Sbjct: 702 DWQRLQREVATHGMRNGYLLAVAPTSSTSIIAGTTAGVDP----------------IMKQ 745
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+ L + K +++ + + QK LYK+ + Q+ + A R
Sbjct: 746 YFLEE-----------KKGMLMPRVA----PSLSQKTCPLYKSAHAVEQRWSIRAAGLRQ 790
Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
IDQ+QS+N+Y+ + ++ ++ + W++G+K+ +YY+R++
Sbjct: 791 RHIDQAQSVNLYITTDFTLKQVLDLYVYAWEVGMKS-LYYVRSQ 833
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
+GV G + Q + ++ +E +IFE I A+EAS IA G Y + GS
Sbjct: 629 LGVSGYHHVLAQQGIDWESDEHLAFADRIFERINRAAIEASMTIAREKGAYGCFTGS 685
>sp|Q01037|RIR1_SHV21 Ribonucleoside-diphosphate reductase large subunit OS=Saimiriine
herpesvirus 2 (strain 11) GN=61 PE=3 SV=1
Length = 767
Score = 206 bits (524), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 150/481 (31%), Positives = 241/481 (50%), Gaps = 37/481 (7%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQ--WSL 148
RP + A Y+E WH I +FL K + R +F G+ +P F + ESD W L
Sbjct: 257 RPVSVATYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYL 314
Query: 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDA 208
P L+ +G +F++ Y + +E K+ + V + L F+++++ I+TG+PY++ K+A
Sbjct: 315 FDPQDAPNLTRLYGLEFEEEYLRLVSEKKYKQSVTLKSLMFSLINTIIKTGSPYVISKEA 374
Query: 209 CNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTY------- 260
N+ + G I CSNLC EIV+ K + CNLA++ L +N ++ Y
Sbjct: 375 MNKHHWYETQGEAINCSNLCAEIVQ-QPKQFTSTCNLANVCLPKCLNSSNFPYTCSNTAQ 433
Query: 261 -NFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFD 319
+F+KL+ + +N I ++ P A R R +GIG GLAD+F +M +
Sbjct: 434 FDFSKLEYAVQAAVFIINACI-LSPSPTSSA-TVGQRERSMGIGCHGLADVFSEMGYGYL 491
Query: 320 CNESRLLNKQIFETIYYGALEASCEIAA--RDGPYQTYEGSPVSQGILQYDMWGVTP--T 375
ES L++ IFET+YY A++ S EI + + P+ + S ++ G+ + W P
Sbjct: 492 DLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSKLAHGVFHWATWDAMPQRV 551
Query: 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 435
+ W L++ I K GV NS IA MPTA T+Q+ G +SF PY +N+ S+ E
Sbjct: 552 PMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFANMSSKVSNKEEIMK 611
Query: 436 VNHHLLRDLVELGLWDDNMKDQ-LIVNNGSIQDIEGIPQKLKDLYK---TVWEIPQKTVL 491
N L+ N+K Q L D+ +P+ + YK T ++ + +
Sbjct: 612 PNITFLK----------NVKPQDLCTVRFYGGDVSMMPEDVSTRYKHFLTAFDYCPEAQM 661
Query: 492 DMAADRGAFIDQSQSLNIYMAEINYAK---MSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
A+ R ++DQSQSL +++ E N + + G++LGLKT MYY R K +Q
Sbjct: 662 RRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIMYYCRVKKTTKLLQ 721
Query: 549 F 549
Sbjct: 722 L 722
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 19/194 (9%)
Query: 769 FKYDMWGVTP--TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826
F + W P + W L++ I K GV NS IA MPTA T+Q+ G +SF PY +N
Sbjct: 539 FHWATWDAMPQRVPMKQWIHLQDNIKKFGVFNSQFIALMPTAGTSQLTGYTDSFYPYFAN 598
Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQ-LIVNNGSIQDIEGIPQKLKDLYK- 884
+ S+ E N L+ N+K Q L D+ +P+ + YK
Sbjct: 599 MSSKVSNKEEIMKPNITFLK----------NVKPQDLCTVRFYGGDVSMMPEDVSTRYKH 648
Query: 885 --TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAK---MSSMHFHGWKLGLKTGM 939
T ++ + + A+ R ++DQSQSL +++ E N + + G++LGLKT M
Sbjct: 649 FLTAFDYCPEAQMRRASIRAPYVDQSQSLTLFLTEENVQSAKYLKDLLLLGFRLGLKTIM 708
Query: 940 YYLRTKPAANAIQF 953
YY R K +Q
Sbjct: 709 YYCRVKKTTKLLQL 722
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAA--RDGPYQTYEGSP 650
IG GLAD+F +M + ES L++ IFET+YY A++ S EI + + P+ + S
Sbjct: 474 IGCHGLADVFSEMGYGYLDLESECLDRDIFETMYYTAVKTSSEICSVGKGQPFAGFRKSK 533
Query: 651 VSQGILQYDMWGVTP 665
++ G+ + W P
Sbjct: 534 LAHGVFHWATWDAMP 548
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQ--WSL 58
RP + A Y+E WH I +FL K + R +F G+ +P F + ESD W L
Sbjct: 257 RPVSVATYIEVWHCQIHEFLSAKLPENPD--RCNSIFQGVCVPSLFFKMYESDPNGLWYL 314
Query: 59 MCPNACRGLSDSWGEKFDDLYKKYEAE 85
P L+ +G +F++ Y + +E
Sbjct: 315 FDPQDAPNLTRLYGLEFEEEYLRLVSE 341
>sp|Q66663|RIR1_EHV2 Ribonucleoside-diphosphate reductase large subunit OS=Equine
herpesvirus 2 (strain 86/87) GN=61 PE=3 SV=1
Length = 799
Score = 202 bits (515), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 233/490 (47%), Gaps = 51/490 (10%)
Query: 90 FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVES--DAQWS 147
RP + A Y+E WH I +FL K E R + +F G+ +P F R E D+QW
Sbjct: 272 LRPVSVAAYMELWHEQIEEFLAAKLPENPE--RCQSIFQGVCVPGLFFRLYEQNPDSQWH 329
Query: 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
L P L+ +G+KFD+ Y + G + +PA+ L FA++ + I+TG+PY+L KD
Sbjct: 330 LFSPKVGGHLAGLYGDKFDEEYARLVRHGLYSSSLPAKSLMFALISAIIKTGSPYILSKD 389
Query: 208 ACNRKSNQQNLG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINP----------- 255
A NR + G I +NLC E+V+ + + CNLA++ L +
Sbjct: 390 AINRHHWFETQGNAISYANLCAEVVQ-QPHEFTSTCNLANVCLPACLRARGEGEGAGAAG 448
Query: 256 ------------ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303
D + F L+ + +N I P R R GIG
Sbjct: 449 EGEGADRLSPLTPDLEFCFDTLRAAVRAAVYMINASILGGVCPTPGVRVMQA-ERSAGIG 507
Query: 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG--PYQTYEGSPVS 361
VQGLAD+F ++ + ES LL+ +IFE +YY A+ AS ++ G P+ ++ S +S
Sbjct: 508 VQGLADVFAKLGRGYMDAESALLDARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSKLS 567
Query: 362 QGILQYDMWGVTPTDLWD----WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 417
+G ++ WGV L+ W L+E + KHG NS IA MPTA T+Q+ G +ESF
Sbjct: 568 RGEFHWESWGVQYDSLFIERQLWEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFY 627
Query: 418 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
P+ +N+ S+ E N L + + L+ +G D+ +P L
Sbjct: 628 PFYANVSSKVSNKEEVMKPNITFLERVSPSDV-------PLLKYHGG--DVSKLPPPLAA 678
Query: 478 LYK---TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMS---SMHFHGWKLGL 531
Y+ T ++ + + AA R F+DQSQS + ++ E N S ++ G LGL
Sbjct: 679 KYRNFLTAFDYSPEDQIRRAAARSPFVDQSQSFSFFLKEANVKSASYVKNLILLGHGLGL 738
Query: 532 KTGMYYLRTK 541
KT MYY R +
Sbjct: 739 KTIMYYCRIQ 748
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Query: 769 FKYDMWGVTPTDLWD----WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 824
F ++ WGV L+ W L+E + KHG NS IA MPTA T+Q+ G +ESF P+
Sbjct: 571 FHWESWGVQYDSLFIERQLWEELRESVTKHGTFNSQFIALMPTAGTSQLTGLSESFYPFY 630
Query: 825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYK 884
+N+ S+ E N L + + L+ +G D+ +P L Y+
Sbjct: 631 ANVSSKVSNKEEVMKPNITFLERVSPSDV-------PLLKYHGG--DVSKLPPPLAAKYR 681
Query: 885 ---TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMS---SMHFHGWKLGLKTG 938
T ++ + + AA R F+DQSQS + ++ E N S ++ G LGLKT
Sbjct: 682 NFLTAFDYSPEDQIRRAAARSPFVDQSQSFSFFLKEANVKSASYVKNLILLGHGLGLKTI 741
Query: 939 MYYLRTK 945
MYY R +
Sbjct: 742 MYYCRIQ 748
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVES--DAQWSL 58
RP + A Y+E WH I +FL K E R + +F G+ +P F R E D+QW L
Sbjct: 273 RPVSVAAYMELWHEQIEEFLAAKLPENPE--RCQSIFQGVCVPGLFFRLYEQNPDSQWHL 330
Query: 59 MCPNACRGLSDSWGEKFDDLYKKYEAEGL 87
P L+ +G+KFD+ Y + GL
Sbjct: 331 FSPKVGGHLAGLYGDKFDEEYARLVRHGL 359
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG--PYQTYEGSP 650
IGVQGLAD+F ++ + ES LL+ +IFE +YY A+ AS ++ G P+ ++ S
Sbjct: 506 IGVQGLADVFAKLGRGYMDAESALLDARIFEVMYYQAVRASNQLVTVGGAPPHANWKNSK 565
Query: 651 VSQGILQYDMWGV 663
+S+G ++ WGV
Sbjct: 566 LSRGEFHWESWGV 578
>sp|O36411|RIR1_ALHV1 Ribonucleoside-diphosphate reductase large subunit OS=Alcelaphine
herpesvirus 1 (strain C500) GN=61 PE=3 SV=1
Length = 780
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 157/566 (27%), Positives = 264/566 (46%), Gaps = 62/566 (10%)
Query: 60 CPNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKE 119
C +C GL +S E F+D RP + A Y+E WH I +FL +K +
Sbjct: 237 CIQSCVGLINSQVEFFNDQNP----------RPVSVAAYMEVWHSQIQEFLAVK--LPEN 284
Query: 120 EFRARDLFYGLWIPDEFMRR-VESDAQ-WSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGK 177
R ++ GL IP F + +E Q W L P L++ +G++F Y++ G
Sbjct: 285 PSRCASIYQGLCIPKLFFEKFIEDPGQNWYLFKPEKSGNLANLYGDEFRSEYERLVGIGC 344
Query: 178 FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGT-IKCSNLCTEIVEYTSK 236
+ +P + L F I+++ I+TG+PY++YK+ACN + G I +NLC E+++Y
Sbjct: 345 YADAIPIKSLMFLIINTIIKTGSPYIIYKEACNEHHWKNMEGCAIASANLCAEVIQYPGA 404
Query: 237 DEVAVCNLASIALNMYI--------NPADKTY--NFTKLKDVAKI--VTKNLNKIIDVNF 284
D V+ CNLA++ L M + +P +KTY N + + V+ + L+ ++V
Sbjct: 405 D-VSTCNLANVCLPMCLVTVSNDSHSPLEKTYCGNVIESQAVSGVGFSMPILHAAVEVAV 463
Query: 285 YPVEEA----------RNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETI 334
+ V A R R +GIGV GLAD+F +M + + L+ +IFE +
Sbjct: 464 FLVNCAIAGGKCVTPGMERGQRERSMGIGVHGLADVFAEMGYSYLDERAARLDVEIFENM 523
Query: 335 YYGALEASCEIAARDG--PYQTYEGSPVSQGILQYDMWGVT--PTDLWDWAALKEKIAKH 390
Y+ A++ S I G P++ + S + G + W + +W L +
Sbjct: 524 YFRAVKTSNNICRLGGGRPFEGWGESKLRHGFFHWQGWEDVNLSIPITEWEKLSRRCISS 583
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
GV NS IA MPT ++ + G +ES+ PY +NI S+ +S + +V+ ++ W
Sbjct: 584 GVYNSQFIALMPTVGSSLLTGFSESYYPYFANISSK--VSSKEEVMKPNMT-------FW 634
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKD---LYKTVWEIPQKTVLDMAADRGAFIDQSQSL 507
+ K+ L D+ P+ LK+ L+ + ++ + L A R F+DQSQS
Sbjct: 635 NRVSKEDLDTVRFFSGDVALFPEPLKEKYSLFLSAFDYCAEKQLARARLRAPFVDQSQSH 694
Query: 508 NIYMAEINYAK---MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKD 564
+ ++ E N + + G+ LGLKT MYY + K + F + + + M D
Sbjct: 695 SFHLKEENVVSARFLKDLILSGYTLGLKTIMYYCKVKKQSTMSSFQCLRDQNKSEMTGND 754
Query: 565 ARSQEE-----IQADQEQAMAAMICR 585
+ E A E + A + C+
Sbjct: 755 QGVEPESYIKCTAAGGETSEACLHCQ 780
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 20/220 (9%)
Query: 781 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 840
+ +W L + GV NS IA MPT ++ + G +ES+ PY +NI S+ +S + +V+
Sbjct: 570 ITEWEKLSRRCISSGVYNSQFIALMPTVGSSLLTGFSESYYPYFANISSK--VSSKEEVM 627
Query: 841 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD---LYKTVWEIPQKTVLDM 897
++ W+ K+ L D+ P+ LK+ L+ + ++ + L
Sbjct: 628 KPNMT-------FWNRVSKEDLDTVRFFSGDVALFPEPLKEKYSLFLSAFDYCAEKQLAR 680
Query: 898 AADRGAFIDQSQSLNIYMAEINYAK---MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
A R F+DQSQS + ++ E N + + G+ LGLKT MYY + K + F
Sbjct: 681 ARLRAPFVDQSQSHSFHLKEENVVSARFLKDLILSGYTLGLKTIMYYCKVKKQSTMSSFQ 740
Query: 955 IDKTKMANAMASKDTRSQEE-----IQADQEQAMAAMICR 989
+ + + M D + E A E + A + C+
Sbjct: 741 CLRDQNKSEMTGNDQGVEPESYIKCTAAGGETSEACLHCQ 780
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRR-VESDAQ-WSL 58
RP + A Y+E WH I +FL +K + R ++ GL IP F + +E Q W L
Sbjct: 258 RPVSVAAYMEVWHSQIQEFLAVK--LPENPSRCASIYQGLCIPKLFFEKFIEDPGQNWYL 315
Query: 59 MCPNACRGLSDSWGEKFDDLYKK 81
P L++ +G++F Y++
Sbjct: 316 FKPEKSGNLANLYGDEFRSEYER 338
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG--PYQTYEGSP 650
IGV GLAD+F +M + + L+ +IFE +Y+ A++ S I G P++ + S
Sbjct: 491 IGVHGLADVFAEMGYSYLDERAARLDVEIFENMYFRAVKTSNNICRLGGGRPFEGWGESK 550
Query: 651 VSQGILQYDMW 661
+ G + W
Sbjct: 551 LRHGFFHWQGW 561
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 685 LWFAILDSQIETGTPYMLYKDACN 708
L F I+++ I+TG+PY++YK+ACN
Sbjct: 354 LMFLIINTIIKTGSPYIIYKEACN 377
>sp|Q6GZT8|RIR1_FRG3G Putative ribonucleoside-diphosphate reductase large subunit OS=Frog
virus 3 (isolate Goorha) GN=FV3-038R PE=3 SV=1
Length = 565
Score = 197 bits (500), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 140/461 (30%), Positives = 214/461 (46%), Gaps = 74/461 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G++A Y+ H D+ +F+ ++ TG + +L +G+ I D FMR VE W L+
Sbjct: 141 RRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVD 200
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P + G V AR+LW IL+++ TG PY+ + D N
Sbjct: 201 PKS----------------------GAVAHTVSARELWERILETRFRTGEPYLNFIDTAN 238
Query: 211 RKSN---QQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
R + ++ I+ SNLC EI T+ D AVC L+S+ L + Y+ + D
Sbjct: 239 RGLHPALKRKGLKIRGSNLCNEIHLPTAADRTAVCCLSSVNL--------ERYDEWRETD 290
Query: 268 VAKIVTKNLNKIID--VNFYPVE-----EARNSNMRHRPIGIGVQGLADLFIQMRLPFDC 320
+ + + + L+ +I V+ P++ A S R IG+G G A + R+PFD
Sbjct: 291 LVECLVEMLDNVIQTFVDEAPLKTPHTARAVRSAAGERSIGLGAMGWARYLQKHRIPFDS 350
Query: 321 NESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380
E+ L IF I A+ A+ +A G G
Sbjct: 351 EEAVRLTGIIFRGIKSAAVRATRALAKERGEAPDLTG----------------------- 387
Query: 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHL 440
+GVRN+ L+A P A++A +LG + S EP Y R G Q VN +L
Sbjct: 388 ---------YGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYL 438
Query: 441 LRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 500
RDL LGL + + D ++ N GS+Q I +P LK +YKT +E+ Q+ ++ AA+R
Sbjct: 439 KRDLESLGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRH 498
Query: 501 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT 540
+ Q QSLN++ + +S +H WK G K G+YYLRT
Sbjct: 499 LCQGQSLNLFFPIGADKTNLSDVHRLAWKSGCK-GLYYLRT 538
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 791 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 850
+ +GVRN+ L+A P A++A +LG + S EP Y R G Q VN +L RDL
Sbjct: 385 LTGYGVRNAHLLAVAPNANSALLLGTSPSVEPEIGAAYVHRTRVGSHQAVNPYLKRDLES 444
Query: 851 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 910
LGL + + D ++ N GS+Q I +P LK +YKT +E+ Q+ ++ AA+R + Q QS
Sbjct: 445 LGLDTEEVWDSIVSNKGSVQHIAALPDSLKKVYKTSFEMDQRVIVRQAAERQRHLCQGQS 504
Query: 911 LNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT 944
LN++ + +S +H WK G K G+YYLRT
Sbjct: 505 LNLFFPIGADKTNLSDVHRLAWKSGCK-GLYYLRT 538
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R G++A Y+ H D+ +F+ ++ TG + +L +G+ I D FMR VE W L+
Sbjct: 141 RRGSYAAYMSISHPDLIEFITMRTPTGDVNRKNLNLHHGVNITDTFMRCVERGENWDLVD 200
Query: 61 PNA 63
P +
Sbjct: 201 PKS 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,681,134
Number of Sequences: 539616
Number of extensions: 16261246
Number of successful extensions: 36622
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 35741
Number of HSP's gapped (non-prelim): 493
length of query: 998
length of database: 191,569,459
effective HSP length: 127
effective length of query: 871
effective length of database: 123,038,227
effective search space: 107166295717
effective search space used: 107166295717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)