Query psy1689
Match_columns 998
No_of_seqs 462 out of 2883
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:43:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1112|consensus 100.0 4E-133 8E-138 1098.4 30.5 506 89-597 291-796 (796)
2 PLN02437 ribonucleoside--dipho 100.0 9E-126 2E-130 1153.8 45.1 524 70-597 270-813 (813)
3 PRK07207 ribonucleotide-diphos 100.0 2E-122 4E-127 1140.1 40.6 520 70-596 425-965 (965)
4 PRK06539 ribonucleotide-diphos 100.0 2E-120 4E-125 1106.3 43.9 484 71-559 279-779 (822)
5 PRK12365 ribonucleotide-diphos 100.0 3E-119 6E-124 1122.9 42.5 483 70-555 508-1008(1046)
6 TIGR02506 NrdE_NrdA ribonucleo 100.0 9E-111 2E-115 1008.9 43.3 469 70-541 133-617 (617)
7 PF02867 Ribonuc_red_lgC: Ribo 100.0 3E-110 6E-115 993.8 41.3 470 69-538 55-538 (538)
8 PRK08447 ribonucleotide-diphos 100.0 5E-110 1E-114 1008.3 39.3 441 70-549 267-777 (789)
9 PRK09209 ribonucleotide-diphos 100.0 1E-107 2E-112 990.0 37.0 432 70-544 288-752 (761)
10 PHA02572 nrdA ribonucleoside-d 100.0 1E-107 3E-112 988.0 36.8 439 70-552 274-741 (753)
11 PRK09103 ribonucleotide-diphos 100.0 4E-107 9E-112 982.8 36.6 443 70-552 273-743 (758)
12 PRK07088 ribonucleotide-diphos 100.0 7E-107 2E-111 981.2 36.6 428 71-544 291-755 (764)
13 PRK12364 ribonucleotide-diphos 100.0 2E-105 3E-110 983.6 37.2 431 70-543 367-832 (842)
14 PRK07632 ribonucleotide-diphos 100.0 4E-105 9E-110 958.4 34.8 432 70-544 220-690 (699)
15 PRK08115 ribonucleotide-diphos 100.0 1E-104 3E-109 954.9 38.2 461 70-553 241-783 (858)
16 PRK07187 ribonucleotide-diphos 100.0 7E-104 2E-108 950.3 36.3 434 70-544 221-698 (721)
17 TIGR02504 NrdJ_Z ribonucleosid 100.0 3E-101 7E-106 922.0 45.7 501 5-543 77-582 (586)
18 PRK06556 vitamin B12-dependent 100.0 3E-101 7E-106 940.7 44.8 506 5-551 151-703 (953)
19 PRK07306 ribonucleotide-diphos 100.0 3E-101 6E-106 928.9 35.4 431 70-545 223-707 (720)
20 PRK09102 ribonucleotide-diphos 100.0 3E-100 7E-105 906.8 43.9 471 5-550 89-576 (601)
21 PRK08188 ribonucleotide-diphos 100.0 5E-101 1E-105 923.0 37.5 431 70-545 229-701 (714)
22 PRK08665 ribonucleotide-diphos 100.0 2E-100 4E-105 929.7 41.5 423 70-549 148-573 (752)
23 PRK06406 ribonucleotide-diphos 100.0 3E-100 7E-105 922.4 40.7 423 70-550 303-728 (771)
24 PRK07562 ribonucleotide-diphos 100.0 3.2E-98 7E-103 914.5 42.3 502 1-550 275-926 (1220)
25 PRK06948 ribonucleotide reduct 100.0 3E-98 7E-103 891.5 38.4 432 70-545 145-586 (595)
26 cd02888 RNR_II_dimer Class II 100.0 3E-94 6.5E-99 838.0 36.0 418 9-538 37-462 (464)
27 TIGR02510 NrdE-prime ribonucle 100.0 4.4E-94 9.5E-99 850.2 34.1 399 70-547 140-558 (571)
28 PRK08332 ribonucleotide-diphos 100.0 1.9E-92 4.1E-97 892.4 42.6 314 239-552 1305-1622(1740)
29 cd01679 RNR_I Class I ribonucl 100.0 6.6E-89 1.4E-93 791.7 33.5 351 70-540 103-460 (460)
30 COG0209 NrdA Ribonucleotide re 100.0 6.1E-87 1.3E-91 806.9 38.5 442 71-552 194-646 (651)
31 KOG1112|consensus 100.0 8.6E-75 1.9E-79 637.7 17.5 300 583-997 493-792 (796)
32 PLN02437 ribonucleoside--dipho 100.0 8.1E-70 1.8E-74 663.2 24.7 296 586-998 515-810 (813)
33 PRK07207 ribonucleotide-diphos 100.0 6E-68 1.3E-72 656.0 23.0 309 586-998 655-963 (965)
34 cd01676 RNR_II_monomer Class I 100.0 2.6E-65 5.7E-70 611.1 29.5 372 69-554 214-621 (658)
35 PRK12365 ribonucleotide-diphos 100.0 6.5E-66 1.4E-70 644.0 22.1 274 584-959 735-1008(1046)
36 PRK06539 ribonucleotide-diphos 100.0 2.4E-65 5.1E-70 623.7 23.6 307 586-997 507-819 (822)
37 PRK07562 ribonucleotide-diphos 100.0 2.5E-58 5.4E-63 564.3 34.7 283 586-956 540-928 (1220)
38 PRK08332 ribonucleotide-diphos 100.0 1.7E-59 3.7E-64 593.8 24.2 258 586-956 1364-1622(1740)
39 TIGR02506 NrdE_NrdA ribonucleo 100.0 3E-59 6.5E-64 562.9 24.3 253 586-945 364-617 (617)
40 PF02867 Ribonuc_red_lgC: Ribo 100.0 9.6E-59 2.1E-63 552.3 20.2 254 587-942 284-538 (538)
41 PRK06556 vitamin B12-dependent 100.0 2E-57 4.3E-62 556.2 23.2 271 586-956 421-704 (953)
42 PRK06406 ribonucleotide-diphos 100.0 1.7E-56 3.7E-61 542.2 21.6 232 586-957 498-731 (771)
43 PRK08115 ribonucleotide-diphos 100.0 1.2E-56 2.6E-61 540.6 20.1 242 584-957 541-783 (858)
44 TIGR02510 NrdE-prime ribonucle 100.0 1.7E-56 3.7E-61 530.2 19.1 227 586-955 330-562 (571)
45 PRK08665 ribonucleotide-diphos 100.0 1.2E-55 2.5E-60 537.7 22.3 233 586-956 342-576 (752)
46 PRK09102 ribonucleotide-diphos 100.0 1E-55 2.2E-60 526.3 21.2 224 586-955 350-577 (601)
47 PRK08447 ribonucleotide-diphos 100.0 5E-56 1.1E-60 538.4 18.8 230 586-950 543-774 (789)
48 TIGR02504 NrdJ_Z ribonucleosid 100.0 2.8E-55 6.1E-60 526.1 23.7 245 587-951 340-586 (586)
49 TIGR02505 RTPR ribonucleoside- 100.0 1.7E-54 3.7E-59 518.7 24.1 355 68-530 230-640 (713)
50 PRK09103 ribonucleotide-diphos 100.0 5.7E-55 1.2E-59 529.0 18.5 231 586-956 505-743 (758)
51 PRK07632 ribonucleotide-diphos 100.0 6.3E-55 1.4E-59 524.8 17.2 234 586-948 455-690 (699)
52 PHA02572 nrdA ribonucleoside-d 100.0 1.1E-54 2.4E-59 526.9 18.9 230 586-956 502-741 (753)
53 PRK09209 ribonucleotide-diphos 100.0 1E-54 2.3E-59 527.7 17.8 214 586-948 537-752 (761)
54 PRK07187 ribonucleotide-diphos 100.0 1.3E-54 2.8E-59 523.6 18.1 238 587-947 458-697 (721)
55 PRK07088 ribonucleotide-diphos 100.0 5E-54 1.1E-58 521.2 17.8 214 586-948 541-755 (764)
56 PRK08188 ribonucleotide-diphos 100.0 7.2E-53 1.6E-57 507.3 19.3 236 587-949 463-701 (714)
57 PRK07306 ribonucleotide-diphos 100.0 8.6E-53 1.9E-57 508.5 18.3 233 587-948 457-706 (720)
58 PRK12364 ribonucleotide-diphos 100.0 9.9E-53 2.2E-57 517.2 17.1 213 585-948 618-833 (842)
59 PRK06948 ribonucleotide reduct 100.0 4.3E-52 9.3E-57 496.0 18.8 230 586-954 360-592 (595)
60 cd02888 RNR_II_dimer Class II 100.0 2.2E-47 4.7E-52 445.3 17.1 173 587-944 291-464 (464)
61 COG0209 NrdA Ribonucleotide re 100.0 3.3E-46 7.2E-51 452.3 19.7 225 586-956 421-646 (651)
62 cd01679 RNR_I Class I ribonucl 100.0 6E-46 1.3E-50 432.4 18.5 175 587-944 285-460 (460)
63 cd00576 RNR_PFL Ribonucleotide 100.0 3.2E-34 6.9E-39 330.9 22.4 290 73-537 99-400 (401)
64 cd01676 RNR_II_monomer Class I 100.0 5.6E-35 1.2E-39 350.5 15.2 151 797-958 466-621 (658)
65 TIGR02505 RTPR ribonucleoside- 99.9 3.2E-24 6.9E-29 258.5 12.8 133 797-934 497-640 (713)
66 cd00576 RNR_PFL Ribonucleotide 99.7 1.8E-16 4E-21 183.3 12.3 90 798-941 309-400 (401)
67 cd01675 RNR_III Class III ribo 97.6 0.0027 5.9E-08 77.3 19.0 254 183-533 227-511 (555)
68 TIGR02487 NrdD anaerobic ribon 97.3 0.014 3.1E-07 71.5 20.1 250 186-532 233-516 (579)
69 PRK10977 hypothetical protein; 97.3 0.0075 1.6E-07 72.3 17.3 257 180-556 187-467 (509)
70 PRK08270 anaerobic ribonucleos 97.0 0.028 6.2E-07 69.6 19.4 242 188-528 345-613 (656)
71 PRK07111 anaerobic ribonucleos 96.8 0.043 9.2E-07 68.9 18.7 261 183-536 378-676 (735)
72 PRK09263 anaerobic ribonucleos 96.7 0.061 1.3E-06 67.3 19.3 249 184-528 347-630 (711)
73 PRK14704 anaerobic ribonucleos 96.6 0.084 1.8E-06 65.1 19.1 254 183-534 259-553 (618)
74 PRK08271 anaerobic ribonucleos 96.0 0.1 2.2E-06 64.2 15.3 195 238-529 347-555 (623)
75 PF13597 NRDD: Anaerobic ribon 95.9 0.016 3.5E-07 70.5 7.5 154 181-350 222-389 (546)
76 PRK08579 anaerobic ribonucleos 95.7 0.42 9.1E-06 59.1 18.8 202 239-528 333-556 (625)
77 TIGR02827 RNR_anaer_Bdell anae 93.3 0.65 1.4E-05 57.0 12.2 108 237-351 319-431 (586)
78 PF11230 DUF3029: Protein of u 89.0 8.6 0.00019 45.3 14.7 263 178-557 171-456 (487)
79 PRK14704 anaerobic ribonucleos 85.4 11 0.00024 46.9 14.0 55 887-941 499-556 (618)
80 cd01675 RNR_III Class III ribo 80.5 26 0.00057 43.2 14.6 55 887-941 459-515 (555)
81 PRK07111 anaerobic ribonucleos 79.9 17 0.00038 46.2 13.0 55 887-941 620-677 (735)
82 PRK08271 anaerobic ribonucleos 53.6 20 0.00043 44.7 5.7 51 585-635 411-462 (623)
83 PRK08270 anaerobic ribonucleos 46.8 30 0.00065 43.5 5.8 49 587-635 466-515 (656)
84 TIGR02827 RNR_anaer_Bdell anae 46.4 32 0.00069 42.7 5.8 49 586-634 378-427 (586)
85 PRK09263 anaerobic ribonucleos 45.2 29 0.00064 44.0 5.4 43 591-633 488-532 (711)
86 TIGR02487 NrdD anaerobic ribon 42.0 39 0.00084 42.0 5.7 55 887-941 465-521 (579)
87 COG1328 NrdD Oxygen-sensitive 38.4 69 0.0015 40.5 7.0 103 238-340 399-526 (700)
88 PF13597 NRDD: Anaerobic ribon 33.4 36 0.00078 41.9 3.5 48 586-633 337-385 (546)
89 COG2099 CobK Precorrin-6x redu 24.2 69 0.0015 35.5 3.3 81 302-398 53-134 (257)
No 1
>KOG1112|consensus
Probab=100.00 E-value=3.8e-133 Score=1098.36 Aligned_cols=506 Identities=74% Similarity=1.235 Sum_probs=488.4
Q ss_pred cccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHH
Q psy1689 89 YFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDL 168 (998)
Q Consensus 89 g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~ 168 (998)
++|+||+++||++||.||++||++|+++|+++.|++++|+++||||+||+||++|++|+||+|.+||+|.++||+||+.+
T Consensus 291 ~kRpGafAiyLEPWHadifdFlelrKn~G~Ee~RARdlF~ALWipDLFMkRVe~n~~WslfcP~~apGL~dvwG~EFe~L 370 (796)
T KOG1112|consen 291 NKRPGAFAIYLEPWHADIFDFLELRKNTGKEEFRARDLFYALWIPDLFMKRVENNGEWSLFCPNEAPGLDDVWGDEFEAL 370 (796)
T ss_pred CCCCceeEEEechhHHHHHHHHHHHhccChHHHHHHHHHHHHhhhHHHHHHHhcCCceEEECCccCCchHHHHhHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcceeeecccc
Q psy1689 169 YKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIA 248 (998)
Q Consensus 169 Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SIN 248 (998)
|.+||++|+..|+|+|+.||..|++++.+||.||++|+|+|||.+|+.++|+|++||||+||+.|++|+|++||||+||.
T Consensus 371 Y~kYEkegr~~k~vkAqklW~aIleaQ~ETGtPym~yKDacNRkSNQqnlGtIk~SNLCtEIvEYsspdE~aVCNLASia 450 (796)
T KOG1112|consen 371 YTKYEKEGRGKKTVKAQKLWYAILEAQVETGTPYMLYKDACNRKSNQQNLGTIKSSNLCTEIVEYSSPDETAVCNLASIA 450 (796)
T ss_pred HHHHHHhccccceeeHHHHHHHHHHHhhccCCceEEehhhhcccccccccceeeecchhHHHhhccCCcceeeeehHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHH
Q psy1689 249 LNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328 (998)
Q Consensus 249 L~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~ 328 (998)
|+.||.. .+.|||+.|++++++.++.|+.+||.|+||+|+++++|.++|||||||+||||+|+.|++||+|+||+.|+.
T Consensus 451 Lp~fv~~-~~~ydF~kl~ev~kvvt~NLNkiID~NYYPv~eAr~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~ 529 (796)
T KOG1112|consen 451 LPMFVTP-EKTYDFEKLAEVTKVVTRNLNKIIDVNYYPVEEARRSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNK 529 (796)
T ss_pred hhhhccc-cccccHHHHHHHHHHHHhhhhheeccCcccchHhhhcccccCCccccchhHHHHHHHHcCCCCChHHHHHHH
Confidence 9999986 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhh
Q psy1689 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQ 408 (998)
Q Consensus 329 ~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~ 408 (998)
+|||+|||+|++||+|||+..|||+.|++|+.++|+||||.|++.|+..|||+.||++|.+||+|||.++|.|||+|+|+
T Consensus 530 qIFEtiYy~aleAScelA~~eGpyetyeGSPvSkGilq~dmw~~~pt~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQ 609 (796)
T KOG1112|consen 530 QIFETIYYAALEASCELAQKEGPYETYEGSPVSKGILQFDMWNVKPTDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQ 609 (796)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCCcccCCCcccccccchhhcCCCCCcccCHHHHHHHHHHhccccceeeccCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChH
Q psy1689 409 ILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQK 488 (998)
Q Consensus 409 i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~ 488 (998)
|+|..++|||+.+|+|.|++.+|+|.+||++|+++|.++|+|++++++.++.++||+|++|.+|+++|++|+|+|||+|+
T Consensus 610 IlGnNE~fEP~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqk 689 (796)
T KOG1112|consen 610 ILGNNECFEPYTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQK 689 (796)
T ss_pred hhcCccccCcccccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHhHhhhhcccccchhh
Q psy1689 489 TVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ 568 (998)
Q Consensus 489 ~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (998)
.+|+|+|+|+.|||||||+||++..++..++.++|||+||+||||+|||+|+++++.+++||+|++.+++++...+..+.
T Consensus 690 tvi~mAAdRg~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~~~~~~~~~~~~ 769 (796)
T KOG1112|consen 690 TVIDMAADRGAFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLNEKAEVAEGDSK 769 (796)
T ss_pred HHHHHHhhcccccccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhcccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765554333321
Q ss_pred HHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689 569 EEIQADQEQAMAAMICRRDNKEDCIGVQG 597 (998)
Q Consensus 569 ~~~~~~~~~~~~~~~c~~~~~~~g~g~~G 597 (998)
++++...+++.|+|+++|++-|+-|.|
T Consensus 770 --~~e~~~~~~~~~~c~~~n~e~C~mCss 796 (796)
T KOG1112|consen 770 --EEEEDEYNTAVMVCSLDNPEACLMCSS 796 (796)
T ss_pred --hhHHhhhhhhhhhhccCCchHhhhcCC
Confidence 123444577889999999999988765
No 2
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=8.9e-126 Score=1153.75 Aligned_cols=524 Identities=64% Similarity=1.080 Sum_probs=489.1
Q ss_pred hhhhhHHHHHHHHh-hhccc-cccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLV-YFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~-g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~ 147 (998)
+....|.++|+... ...++ |+|+||+|+||++|||||++||++|+++|++++|++++|+||||||+||++|++|++|+
T Consensus 270 sG~vpflk~~n~~~~~v~QgGg~RrGA~~vyL~~wH~DI~eFL~lK~~~g~e~~r~~~l~~sv~ipDlFM~rv~~d~~W~ 349 (813)
T PLN02437 270 NGIVPMLRVFNDTARYVDQGGGKRKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWS 349 (813)
T ss_pred CCchhHHHHHHHHHHHHHcCCCccccceeEEEeCCCccHHHHHHHhcccCcHhHHHHhcceeEEECHHHHHHHHcCCCEE
Confidence 34568888888876 34456 58999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
||+|+++++|.++||++|+++|++++.+|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus 350 Lf~P~e~~~L~~~yG~eF~~~Y~~~e~~g~~~~~V~AreLw~~I~~s~~eTG~P~i~fkD~~N~~~~~~~~G~I~~SNlC 429 (813)
T PLN02437 350 LFCPNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIETGTPYMLFKDSCNRKSNQQNLGTIKSSNLC 429 (813)
T ss_pred EECCcccchHHHhhchHHHHHHHHHHhcCceeEEEEHHHHHHHHHHHHHHhCCCeEEEhHHHhhcCCCccCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCcceeeecccccccccCCC------------------CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHH
Q psy1689 228 TEIVEYTSKDEVAVCNLASIALNMYINPA------------------DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEE 289 (998)
Q Consensus 228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~------------------~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e 289 (998)
+||+||++++++++|||+||||++||.++ +..||++.|+++|+++||+||+|||.+.||+|+
T Consensus 430 tEI~~~~~~~e~avCNL~SINL~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~~~L~~~v~~avr~LDnvID~n~yP~~~ 509 (813)
T PLN02437 430 TEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGSLGSKNRYFDFEKLAEVTAVVTRNLNKIIDVNYYPVET 509 (813)
T ss_pred ccccccCCccceeeeecchhhHHHHHhcccccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence 99999999999999999999999998532 236999999999999999999999999999999
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~ 369 (998)
++++++++|+||||||||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+||.|++|+|++|.|+++.
T Consensus 510 a~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~fp~f~~S~~~~G~~~~~~ 589 (813)
T PLN02437 510 ARRSNMRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDM 589 (813)
T ss_pred HHHHhhcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcchhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689 370 WGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449 (998)
Q Consensus 370 ~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~ 449 (998)
|+..+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+
T Consensus 590 ~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~sn~y~R~~~~Ge~~~vn~~l~~~l~~~g~ 669 (813)
T PLN02437 590 WGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGL 669 (813)
T ss_pred ccCCCchhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCccccccchheeEeecCceEEEECHHHHHHHHHcCC
Confidence 98877778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHc
Q psy1689 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 529 (998)
Q Consensus 450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~ 529 (998)
|++++++.|+.++|++|++|.+|++++.+|+|||||+|+++|+|+|++|||||||||+|||+++++.++|.++|++||++
T Consensus 670 ~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~IDQsqS~nl~l~~~t~~~i~~~~~~Awk~ 749 (813)
T PLN02437 670 WTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSK 749 (813)
T ss_pred ChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred CCceEEEEeeccccccccchhhhHhHhhhhcccccchhhHHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689 530 GLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597 (998)
Q Consensus 530 GlKt~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~G 597 (998)
||||+|||||+++++++++||+|++.+...+...++.. + .+........+|+++|++.|..|+|
T Consensus 750 GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~c~~c~~ 813 (813)
T PLN02437 750 GLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPE-E---EDVETKMAQMVCSLDNREECLACGS 813 (813)
T ss_pred CCCeeEEEEeccccccceEEecchhhhccccccccCcc-c---cccchhhhhccCCCCCccccccccC
Confidence 99999999999999999999999766553321111110 1 0112233458899999999998876
No 3
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2e-122 Score=1140.14 Aligned_cols=520 Identities=39% Similarity=0.662 Sum_probs=479.9
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+|
T Consensus 425 sGvvpflk~~n~~~~~v~QgG~R~GA~~vyL~~wH~DI~eFL~lk~~~gde~~r~~~l~~av~ipD~FM~rv~~d~~w~L 504 (965)
T PRK07207 425 QGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTL 504 (965)
T ss_pred CChhHHHHHHHHHHHHHHcCCcCccceeeEecCCCccHHHHHHHhhccCchhhHhhcCchhhccCHHHHHHHHcCCCEEE
Confidence 34578888888875 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcC-----cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC 223 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g-----~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~ 223 (998)
|+|+++++|.++||++|+++|++|++.+ +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus 505 f~P~~~~~L~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~ 584 (965)
T PRK07207 505 FSPSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVVHS 584 (965)
T ss_pred ecCcccccHHhhhhhHHHHHHHHHHHhcccCCcceeeEeeHHHHHHHHHHHHHHhCCCeeehhHHHHhcCCcccCCeEee
Confidence 9999999999999999999999999754 35799999999999999999999999999999999999999999999
Q ss_pred cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
||||+||+|+++++++++||||||||++||.+ +..||++.|+++|+++||+||+|||++.||+|+++++|+++|+||||
T Consensus 585 SNlCtEI~l~~~~~e~avCNLgSINL~~~v~~-~~~~D~~~l~~~v~~avr~LDnVID~n~yp~~~a~~~n~~~R~IGLG 663 (965)
T PRK07207 585 SNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD-GAKLDHEKLKRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLG 663 (965)
T ss_pred cCCCcceeecCCCcceeeeeccceeHHHHhhC-CCcCCHHHHHHHHHHHHHhccceeeCCCCcHHHHHHHhhccCCcccc
Confidence 99999999999999999999999999999974 23699999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC----------
Q psy1689 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT---------- 373 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~---------- 373 (998)
+|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|+|++|.|...
T Consensus 664 vmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~~~r~~~~~~ 743 (965)
T PRK07207 664 IMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEV 743 (965)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred -CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcH
Q psy1689 374 -PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDD 452 (998)
Q Consensus 374 -p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~ 452 (998)
+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|.++|+++|+|++
T Consensus 744 ~~~~~~dW~~Lr~~i~~~G~RNs~l~AiAPT~S~S~i~g~s~giEP~~s~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~ 823 (965)
T PRK07207 744 DRSSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNPYLVRDLKARGLWDE 823 (965)
T ss_pred cccchhhHHHHHHHHHHhCccccceeccCChHHHHHHhCCCCccCcCchhhheeeccCCceEEeCHHHHHHHHHcCCChH
Confidence 2346799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCc
Q psy1689 453 NMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLK 532 (998)
Q Consensus 453 ~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlK 532 (998)
++++.+.+++||+|+++.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++|||
T Consensus 824 ~~~~~i~~~~Gsvq~i~~ip~~~k~~f~tA~ei~~~~~I~~~A~rQ~~IDqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlK 903 (965)
T PRK07207 824 VMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLK 903 (965)
T ss_pred HHHHHHHhcCCCccCCCCCChhHHhhcccCccCCHHHHHHHHHHHcCcchhhhcCCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred eEEEEeeccccccccchhhhHhHhhhhcccccch----hhHHHHHhHHHHHHhhhhccCCcCcccccc
Q psy1689 533 TGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR----SQEEIQADQEQAMAAMICRRDNKEDCIGVQ 596 (998)
Q Consensus 533 t~~yY~R~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~ 596 (998)
| +||||+++++++++||+++.++.+.++.+..+ +... ......+.+|+|+++. |-.|+
T Consensus 904 t-~YY~Rs~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~ 965 (965)
T PRK07207 904 T-TYYLRTLGATHVEKSTVNTGALNAVSSGGGGAGGAAAAAA----APPAADPKACSIDDPD-CEACQ 965 (965)
T ss_pred e-EEEEecccccchhhhccccccccccCCCcccccccccccc----CCCCCCCCcccCCCCC-CcccC
Confidence 9 89999999999999999976655543322111 0000 0012235789998875 76664
No 4
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.9e-120 Score=1106.31 Aligned_cols=484 Identities=34% Similarity=0.607 Sum_probs=460.5
Q ss_pred hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689 71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149 (998)
Q Consensus 71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf 149 (998)
....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+||
T Consensus 279 G~vpflk~~d~~~~~v~QgG~RrGA~~~yL~~wH~DI~eFL~lk~n~g~e~~r~~~~n~sv~i~D~FM~~V~~d~~w~L~ 358 (822)
T PRK06539 279 GPIPFMHTIDSVLRAVSRGGKKFGALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLF 358 (822)
T ss_pred ChhhHHHHHHHHHHHHHhCCCCcCceEEEecCCCcCHHHHHHHhhcCCchhhhhccCceeeeeCHHHHHHHHcCCCeEEE
Confidence 3468888888876 456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhchhHHHHHHHHHHcC-----cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeec
Q psy1689 150 CPNTCRGLSDSWGEKFDDLYKKYEAEG-----KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS 224 (998)
Q Consensus 150 ~P~~~~~L~~~yg~~F~~~Y~~~e~~g-----~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~s 224 (998)
+|+++++|.++||++|+++|.+|++.+ +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++|
T Consensus 359 ~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~g~~~~~~~V~Ar~Lw~~I~~~~~eTG~P~i~fkD~~N~~~~~~~~g~I~~S 438 (822)
T PRK06539 359 DPLETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRITAREQFRAILMSLQTTSHPWLTWKDTINNRALNNNTGTIHLS 438 (822)
T ss_pred CCcccccHHHHhCcHHHHHHHHHHHhccccccceeeEEeHHHHHHHHHHHHHHhCCCceEehhhHhhcCCCccCCcEeec
Confidence 999999999999999999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcccc
Q psy1689 225 NLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGV 304 (998)
Q Consensus 225 NpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv 304 (998)
|||+||+|+++++++++|||+||||++||.+ +.|||+.|+++|+++||+||+|||.+.||+|+++++++++|+|||||
T Consensus 439 NlC~EI~l~~~~~e~~vCNL~SINL~~fv~~--~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLGv 516 (822)
T PRK06539 439 NLCTEICLPQDRDNVSVCNLASINLSRHLAD--GELDWAQLEESTRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGV 516 (822)
T ss_pred CCcceeeccCCccccceeeeheeEHHHHhcc--ccCcHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999964 57999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC-----------
Q psy1689 305 QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT----------- 373 (998)
Q Consensus 305 ~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~----------- 373 (998)
|||||+|+++|++|+|+||++++++|||.|+++|+++|++||+|+|+||.|++|+|++|.|+++.|...
T Consensus 517 mGlad~L~~lgi~YdS~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~~~~~~~~~~~ 596 (822)
T PRK06539 517 MGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVN 596 (822)
T ss_pred hhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHH
Q psy1689 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDN 453 (998)
Q Consensus 374 p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~ 453 (998)
+...++|+.|++++ ++|+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+| ++
T Consensus 597 ~~~~~dW~~L~~~i-~~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~ 674 (822)
T PRK06539 597 RTTRLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNRNLVADLKELGLW-ET 674 (822)
T ss_pred ccchhcHHHHHHHH-HhCeeccceeecCCchhHHHhcCCCCCcCcchhhhheeecccceEEEeCHHHHHHHHHcCCC-HH
Confidence 22367999999998 56999999999999999999999999999999999999999999999999999999999999 57
Q ss_pred HHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCce
Q psy1689 454 MKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKT 533 (998)
Q Consensus 454 ~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt 533 (998)
+++.|+..+|++|+++.+|++++++|+|||||+|++||+|+|++|+|||||||+|||+++++.++|.++|++||++||||
T Consensus 675 ~~~~i~~~~Gsvq~i~~iP~~~~~~f~tA~eI~~~~~I~maA~rQ~~IDqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT 754 (822)
T PRK06539 675 VREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT 754 (822)
T ss_pred HHHHHHHhCCCccCcccCChHHHhhcCcHhhCCHHHHHHHHHHHCccchhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe
Confidence 88888889999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred EEEEeeccccccccchhhhHhHhhhh
Q psy1689 534 GMYYLRTKPAANAIQFTIDKTKMANA 559 (998)
Q Consensus 534 ~~yY~R~~~~~~~~~~~~~~~~~~~~ 559 (998)
|||+|+++++++++||+|+++..+.
T Consensus 755 -~YYlrt~~~~~~~~~t~~~~~~~~~ 779 (822)
T PRK06539 755 -TYYLHMKPRHTAEQSTVKVNKSAER 779 (822)
T ss_pred -EEeeccchhhhhhhhccccchhccc
Confidence 9999999999999999998876653
No 5
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=2.7e-119 Score=1122.95 Aligned_cols=483 Identities=38% Similarity=0.656 Sum_probs=462.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||||||+||++|++|++|+|
T Consensus 508 sG~vpflk~~n~~~~~v~QgG~R~GA~~~yL~~wH~DI~eFL~lk~~~g~e~~r~~~l~~~v~ipD~FM~~v~~~~~w~L 587 (1046)
T PRK12365 508 QGVIPFIKVANDTAVAVNQGGKRKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTL 587 (1046)
T ss_pred CChHhHHHHHHHHHHHHHhCCcccCceeEEEeCCCccHHHHHHHhhhcccHHHHhhccchhhccCHHHHHHHHcCCCeEE
Confidence 34568888888875 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHc---C--cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAE---G--KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC 223 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~---g--~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~ 223 (998)
|+|+++++|.++||++|+++|++|++. | +..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus 588 f~P~~~~~l~~~yG~~f~~~Y~~ye~~~~~g~~~~~~~v~Ar~Lw~~I~~~~~eTG~P~i~f~D~~N~~~~~~~~G~I~~ 667 (1046)
T PRK12365 588 FSPDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVEAEDLWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVVRC 667 (1046)
T ss_pred ECccccccHHHHhchHHHHHHHHHHHhhhcCCcceeeEEeHHHHHHHHHHHHHHhCCCeEEehhhhhhcCCCCcCCeeEe
Confidence 999999999999999999999999875 5 35699999999999999999999999999999999999999999999
Q ss_pred cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
||||+||+||++++++++||||||||++|+.. +.||++.|+++|+++||+||+|||++.||+|+++++|+++|+||||
T Consensus 668 SNlC~Ei~l~~~~~e~~vCNL~SiNL~~~v~~--~~~D~~~l~~~v~~avr~LDnVID~n~yP~~~a~~~n~~~R~IGLG 745 (1046)
T PRK12365 668 SNLCTEILLNCSETETAVCNLGSINLVEHIVN--DGLDEEKLSETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLG 745 (1046)
T ss_pred cCCCcceeecccCCcCceeecchhhHHHhccc--ccCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999963 4799999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC----------
Q psy1689 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT---------- 373 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~---------- 373 (998)
+|||||+|+++|++|+|+||++|+++|||.|+|+|++||++||+|+|+||.|++|+|++|+|+++.|...
T Consensus 746 vmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~~~~~~~~~~~~ 825 (1046)
T PRK12365 746 VMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLL 825 (1046)
T ss_pred hhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877531
Q ss_pred --CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCc
Q psy1689 374 --PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWD 451 (998)
Q Consensus 374 --p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~ 451 (998)
+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|+
T Consensus 826 ~~~~~~~~W~~Lr~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~ 905 (1046)
T PRK12365 826 MDTSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWD 905 (1046)
T ss_pred ccccchhhHHHHHHHHHHhCcchhcceeeCCCchHHHHhCCCCCcccchhhhheeeccCCeEEEecHHHHHHHHHcCCCh
Confidence 234679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCC
Q psy1689 452 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGL 531 (998)
Q Consensus 452 ~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~Gl 531 (998)
+++++.+.+++||||+++.+|++++.+|+|||||+|++||+|+|++|+|||||||+|||+++++.++|.++|++||++||
T Consensus 906 ~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~I~~~A~rQk~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~Gl 985 (1046)
T PRK12365 906 ADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGL 985 (1046)
T ss_pred HHHHHHHHHhcCCcccccCCchHHHhhcCcHHhCCHHHHHHHHHHHcCccchhhcCCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred ceEEEEeeccccccccchhhhHhH
Q psy1689 532 KTGMYYLRTKPAANAIQFTIDKTK 555 (998)
Q Consensus 532 Kt~~yY~R~~~~~~~~~~~~~~~~ 555 (998)
|| |||||+++++++++||++..+
T Consensus 986 Kt-~YY~Rt~~a~~~~~~t~~~~~ 1008 (1046)
T PRK12365 986 KT-TYYLRSSAATSVEKSFVDINK 1008 (1046)
T ss_pred Ce-EEEeeccccchhhhhcccCCc
Confidence 99 899999999999999999765
No 6
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=9.2e-111 Score=1008.95 Aligned_cols=469 Identities=45% Similarity=0.768 Sum_probs=446.1
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 133 sG~v~f~~~~d~~~~~v~qgg~Rrga~~~~l~~~HpDi~~Fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~d~~w~L 212 (617)
T TIGR02506 133 KGIIPFLKLLDSSVEAVNQGGKRPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYL 212 (617)
T ss_pred CCceeHHHHHHHHHHHHhcCCccccceEEEEeCCCccHHHHHHhccccCchhhHHHhcchhhccCHHHHHHHHcCCCeEE
Confidence 44678888888875 45567899999999999999999999999999998999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcCccee---eecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCC-CCCceeec
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIR---QVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQ-NLGTIKCS 224 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k---~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~-~~g~I~~s 224 (998)
|+|.+++.|.++||++|++.|.++++++...+ +|+||+||++|++++|+||+|||+|+|++|+++|.+ +.|+|++|
T Consensus 213 f~p~~~~~l~~~~~~~f~~~Y~~~~~~~~~~~~~~~v~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~~I~~s 292 (617)
T TIGR02506 213 FSPYDVPGLYGLYGEEFEEEYERLEKDVEARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNPFKTGGGAIKMS 292 (617)
T ss_pred ECccccchhhhcccHHHHHHHHHHHhccccceeeeEeeHHHHHHHHHHHHHHHcCCceEecchhhhcCCcccCCceEEec
Confidence 99999999999999999999999998776544 699999999999999999999999999999999987 77899999
Q ss_pred CCccceecccCCC---CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCc
Q psy1689 225 NLCTEIVEYTSKD---EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG 301 (998)
Q Consensus 225 NpC~EI~l~~~~~---~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IG 301 (998)
|||+||+|++.++ ++++|||+||||++|+.++ .||++.|+++|+++||+||+|||.+.||++++++.+++.|+||
T Consensus 293 NpC~Ei~l~~~~~~~g~~~~CnL~SiNL~~fv~~~--~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iG 370 (617)
T TIGR02506 293 NLCTEITQPTDDSHKGETAVCNLASVNLANFVMED--KFDFSELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIG 370 (617)
T ss_pred CcCccccccCCcccCCceeEEEcHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcCccc
Confidence 9999999998765 7899999999999999753 4999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC------
Q psy1689 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT------ 375 (998)
Q Consensus 302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~------ 375 (998)
||+|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++++.|...|.
T Consensus 371 lG~~Glad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~~~~~~~~ 450 (617)
T TIGR02506 371 IGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMA 450 (617)
T ss_pred cchhHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhcccchhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988776542
Q ss_pred -CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHH
Q psy1689 376 -DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNM 454 (998)
Q Consensus 376 -~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~ 454 (998)
...+|++|+++|++||+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++++++|+++|+|++++
T Consensus 451 ~~~~~W~~L~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~ 530 (617)
T TIGR02506 451 PTEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADR 530 (617)
T ss_pred cchhhHHHHHHHHHHhCccccceeccCChHHHHHHcCCCCccCcccchheeEecCCceEEEecHHHHHHHHHcCCCHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCce
Q psy1689 455 KDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKT 533 (998)
Q Consensus 455 ~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt 533 (998)
++++....|++++++.+|++.+.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||
T Consensus 531 ~~~~~~~~g~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~vDqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~ 610 (617)
T TIGR02506 531 RGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT 610 (617)
T ss_pred HHHHHhhCCCccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhcccccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 99998889999999999999999999999999999999999999999999999999996 79999999999999999999
Q ss_pred EEEEeecc
Q psy1689 534 GMYYLRTK 541 (998)
Q Consensus 534 ~~yY~R~~ 541 (998)
|||||++
T Consensus 611 -~YY~r~~ 617 (617)
T TIGR02506 611 -MYYCRSR 617 (617)
T ss_pred -EEEeecC
Confidence 9999985
No 7
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=2.8e-110 Score=993.80 Aligned_cols=470 Identities=41% Similarity=0.694 Sum_probs=421.6
Q ss_pred hhhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689 69 DSWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147 (998)
Q Consensus 69 ~s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~ 147 (998)
.+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+
T Consensus 55 ssG~v~~~~~~~~~~~~i~q~g~RrGa~~~~l~~~HpDi~~fi~~k~~~~~~~~r~~~~n~sv~i~D~Fm~~v~~~~~w~ 134 (538)
T PF02867_consen 55 SSGPVSFMKLFDSSARAINQGGKRRGAQMVYLDIWHPDIEEFIDAKNNNGDEERRLRNLNISVNIPDEFMEAVENDEDWY 134 (538)
T ss_dssp CCHHHHHHHHHHHHHHHSSSTTSSSTEEEEEEETTBTTHHHHCTTTSSSSTCCG-STTEEEEEEE-HHHHHHHHTT-EEE
T ss_pred CCCchhHHHHHHHHhhHhhhccccccceeeeccCCHHHHHHHHHHhhcccchhhhhcccceeEEecHHHHHHhhcCCCCE
Confidence 456789999999886 4456788999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCcchhhchhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCC
Q psy1689 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL 226 (998)
Q Consensus 148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNp 226 (998)
||+|++++.|+++||++|++.|.++++++. ..++|+||+||++|++++|+||+|||+|+|++|+++|.++.|+|++|||
T Consensus 135 L~~p~~~~~l~~~~g~~f~~~y~~~~~~~~~~~~~v~Ar~l~~~I~~~~~~tG~Pgi~f~D~~Nr~~~~~~~~~I~~sN~ 214 (538)
T PF02867_consen 135 LFDPRDAPELYDLYGEEFEKEYERYERNGKIRKKTVPARELWEKILESAWETGEPGIIFIDNVNRHNPLKHGGPIRASNP 214 (538)
T ss_dssp EBCTTCSTTHHHHHHHHHHHHHHHHHHTTTSEEEEEEHHHHHHHHHHHHHHHS-SEEEEHHHHHHTSTTGGTSTEEEE-T
T ss_pred EECCCcccchhhhhCCcHHHHHHHhhcCCCceeccccHHHHHHHHHHHHhhhCCceehhhHHHHhcCcccCCCeEeecCC
Confidence 999999999999999999999999999874 7899999999999999999999999999999999999999999999999
Q ss_pred ccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccch
Q psy1689 227 CTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQG 306 (998)
Q Consensus 227 C~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~G 306 (998)
|+||+|+++++++++|||+||||++|++++...||++.|+++|++++|+||+|||.+.||+|++++.++++|+||||+||
T Consensus 215 C~Ei~l~~~~~~~~~CnL~SiNL~~~~~~~~~~~d~~~l~~~v~~avr~Ld~vid~~~~p~~~~~~~~~~~R~iGlGv~G 294 (538)
T PF02867_consen 215 CGEIPLPTSPDPYASCNLGSINLARFVEDPFGRFDWEELREVVRLAVRFLDNVIDINDYPLPEARRANKRYRSIGLGVMG 294 (538)
T ss_dssp TSSSEEE-BTTBTEEEEEEEEEGGGGCETTSCEETHHHHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHH--EEEEEES
T ss_pred CcceeecccccccccceeeeechhhhcccccccccHHHHhhHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCcccccccc
Confidence 99999999999999999999999999987556899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCC-----------C
Q psy1689 307 LADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP-----------T 375 (998)
Q Consensus 307 Lad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p-----------~ 375 (998)
||++|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||+|++|+|++|.++++.|.... .
T Consensus 295 la~~L~~~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (538)
T PF02867_consen 295 LADMLAKLGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVDERSKVEKGLSI 374 (538)
T ss_dssp HHHHHHHTT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCCGSSHHHCT---
T ss_pred HHHHHHhCCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999885421 1
Q ss_pred CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHH
Q psy1689 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMK 455 (998)
Q Consensus 376 ~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~ 455 (998)
+..+|++||+++++||+|||+++|||||||||+++|+|+||||+|+++|.|++..|++.++|+++.+.|+++|+|+++++
T Consensus 375 ~~~~W~~Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 454 (538)
T PF02867_consen 375 PTEDWDELREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFANVYTRRSLSGEFPVVNPYLLRDLKELGIWDEELI 454 (538)
T ss_dssp TTSHHHHHHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSSEEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHH
T ss_pred chhhHHHHHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhhhhhhhhhcCCCcccChHHHHHHHHhCCcHHHHH
Confidence 23489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceE
Q psy1689 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTG 534 (998)
Q Consensus 456 ~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~ 534 (998)
+.|..++|++++++.+|++.+.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+
T Consensus 455 ~~i~~~~gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vDqsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~ 534 (538)
T PF02867_consen 455 EEILRHQGSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVDQSISKTLNLPSDATVEDVAELYLYAWKLGLKGI 534 (538)
T ss_dssp HHHHHTTTCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSSS-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHhhhccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCccCcCceeeecCCCCHHHHHHHHHHHHHhCCCee
Confidence 9999999999999999999999999999999999999999999999999999999985 689999999999999999999
Q ss_pred EEEe
Q psy1689 535 MYYL 538 (998)
Q Consensus 535 ~yY~ 538 (998)
|||+
T Consensus 535 tyY~ 538 (538)
T PF02867_consen 535 TYYR 538 (538)
T ss_dssp ECEE
T ss_pred EEeC
Confidence 9995
No 8
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=4.9e-110 Score=1008.27 Aligned_cols=441 Identities=37% Similarity=0.635 Sum_probs=410.6
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+|
T Consensus 267 sGvvp~~k~~n~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~L 346 (789)
T PRK08447 267 GGIIPFLKITNDIAIAVDQLGTRKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTL 346 (789)
T ss_pred CChhhHHHHHHHHHHHHHhCCccccceEEEEeCCCccHHHHHHHhhcccchhhhhhcCeeeeeeCHHHHHHHHcCCCEEE
Confidence 34568888888875 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
|+|+++++|.++||++|++.|.+++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus 347 f~P~~~~~l~~~yG~~f~~~Y~~~e~~~~~~~~~V~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G~I~~SNlC 426 (789)
T PRK08447 347 FDPYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKKILTNYFETGLPFLCFKDNANRANPNAHAGIIRSSNLC 426 (789)
T ss_pred ecCCccchhhhhhChHHHHHHHHHHhccCeeeEEEeHHHHHHHHHHHHHHHCCceEEEhhhhhhcCCCCCCCeeeecccc
Confidence 999999999999999999999999985 4568999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCC--------------------------------------------------------Ccceeeeccccccc
Q psy1689 228 TEIVEYTSKD--------------------------------------------------------EVAVCNLASIALNM 251 (998)
Q Consensus 228 ~EI~l~~~~~--------------------------------------------------------~~~~CNL~SINL~~ 251 (998)
+||+||++|+ ++++||||||||++
T Consensus 427 ~EI~q~~~p~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~~vCNLgSiNL~~ 506 (789)
T PRK08447 427 TEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKAKKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLSK 506 (789)
T ss_pred cccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeEEecHHHHHHH
Confidence 9999987662 66899999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHH
Q psy1689 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIF 331 (998)
Q Consensus 252 ~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~ 331 (998)
|+ |++.|+++|+++||+||+|||++.||+|+++++|+++|+||||+|||||+|+++||+|+|+||++++++||
T Consensus 507 ~v-------~~~~l~~~v~~avR~LDnVID~n~yP~~~~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~ 579 (789)
T PRK08447 507 IN-------TKEDIERVVPIAIRMLDNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIM 579 (789)
T ss_pred hc-------CHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHhcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHH
Confidence 96 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC----------CHhhHHHHHHHHHhcCCCcccccccC
Q psy1689 332 ETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT----------DLWDWAALKEKIAKHGVRNSLLIAPM 401 (998)
Q Consensus 332 e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~----------~~~~W~~Lr~~i~~~G~RNs~ltaia 401 (998)
|.|+++|++||++||+|+|+||.|++|+|++|.|+++.|..... ..++|++|+++|++||+|||+++|||
T Consensus 580 e~i~y~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~d~~~~~~~~~~~~~~~~~~~~dW~~L~~~I~k~GlRNs~l~AiA 659 (789)
T PRK08447 580 EQISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGLREKVKKDGMRNGYLMAIA 659 (789)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcCcChhhcCccchhhhhchhhhhhcccccccchhhHHHHHHHHHHhCccccceeeeC
Confidence 99999999999999999999999999999999999888765321 24699999999999999999999999
Q ss_pred CccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhccc
Q psy1689 402 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 481 (998)
Q Consensus 402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~t 481 (998)
||||||+|+|+|+||||+|++.|.|++.+|+|+++|++|. ++..++|+|
T Consensus 660 PTgS~S~i~g~S~gIEP~~s~~~~~~~~~g~~~~~~p~L~-------------------------------~~~~~~y~t 708 (789)
T PRK08447 660 PTSSISILVGTTQTIEPVYKRKWFEENLSGLIPVVVPNLS-------------------------------PETWQYYTP 708 (789)
T ss_pred ChHHHHHHhCCCcCcCcccchheeEEeccceeEeeCCCCC-------------------------------hHHHHHhch
Confidence 9999999999999999999999999999999998887553 334458999
Q ss_pred ccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCceEEEEeeccccccccch
Q psy1689 482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQF 549 (998)
Q Consensus 482 A~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~ 549 (998)
||||+|+++|+|+|++|||||||||+|||++. ++.++|.++|++||++|||| +||+|+++...+..+
T Consensus 709 A~ei~~~~~I~~~A~rQk~IDQsiS~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~~~~ 777 (789)
T PRK08447 709 AYDLDQKDLIKAAAVRQKWIDQGQSLNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESEEVS 777 (789)
T ss_pred HHhCCHHHHHHHHHHHhcccchhhcCccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhcccc
Confidence 99999999999999999999999999999993 68999999999999999999 699999987665433
No 9
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=9.6e-108 Score=990.01 Aligned_cols=432 Identities=33% Similarity=0.535 Sum_probs=401.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 288 sG~vp~lk~~n~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~R~~~l~~~v~ipD~FM~~V~~d~~w~L 367 (761)
T PRK09209 288 SGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYL 367 (761)
T ss_pred cCHHHHHHHHHHHHHHHHcCCccCCceeEEEeCCcccHHHHHHhhcccccHHHhhhcchhhhccCHHHHHHHHCCCCEEE
Confidence 34568888888876 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCC-----Ccchhhch-----hHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCC
Q psy1689 149 MCPNTCR-----GLSDSWGE-----KFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQN 217 (998)
Q Consensus 149 f~P~~~~-----~L~~~yg~-----~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~ 217 (998)
|+|++++ +|.++||+ +|+++|++++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++
T Consensus 368 f~P~~~~~~~g~~L~d~yg~~~~~g~f~~~Y~~~~~~~~~~~~~v~Ar~Lw~~I~~s~~eTG~Pyi~f~D~~N~~np~~~ 447 (761)
T PRK09209 368 FDPHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVADERLSRKTVKAIDIMKRIMVSQLETGNPFMFYRDEVNRMNPNKH 447 (761)
T ss_pred ECccccccccCccHHHhhccccccchHHHHHHHHHhCcCceeeeecHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCccc
Confidence 9999987 69999997 899999999986 557899999999999999999999999999999999999999
Q ss_pred CCceeecCCccceecccCCC-------------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHH
Q psy1689 218 LGTIKCSNLCTEIVEYTSKD-------------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNK 278 (998)
Q Consensus 218 ~g~I~~sNpC~EI~l~~~~~-------------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~ 278 (998)
.|+|++||||+||+||++|+ ++++|||+||||++|+.+ +.|+++|+++||+||+
T Consensus 448 ~G~I~~SNlC~EI~q~~~p~~~~~~~~~~~~~~~~~~~g~~~vCNL~SiNL~~~v~~-------~~l~~~v~~avR~LDn 520 (761)
T PRK09209 448 EGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQPGDFVVCNLSSINLGRAVTA-------DVLERLIPIQVRMLDN 520 (761)
T ss_pred CCeeEeecCCcccccCCCccccccccccccccccccccCCceEEEChHHHHHHHhch-------HHHHHHHHHHHHHHHH
Confidence 99999999999999987763 468999999999999852 6899999999999999
Q ss_pred hhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy1689 279 IIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 358 (998)
Q Consensus 279 vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S 358 (998)
|||++.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++++++|||+|+++|++||++||+|+|+||.|++|
T Consensus 521 VID~n~yP~~~~~~~n~~~R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S 600 (761)
T PRK09209 521 VIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGS 600 (761)
T ss_pred HHhcccCchHHHHHHHHhccccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeCh
Q psy1689 359 PVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438 (998)
Q Consensus 359 ~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~ 438 (998)
+|++|.+ ++.+... ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|.+.+|.+.++
T Consensus 601 ~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s~~y~r~~~~~~~~~~-- 674 (761)
T PRK09209 601 DWQTGEY-FERRGYN---SPQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVT-- 674 (761)
T ss_pred hhhccch-hhhcCCc---hhhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchhhHhhhhhccceeecc--
Confidence 9999997 5555443 358999999999999999999999999999999999999999999999998766654432
Q ss_pred hHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhc-ccccCCChHHHHHHHHHhCCccccccceeEeecCC-CH
Q psy1689 439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI-NY 516 (998)
Q Consensus 439 ~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-t~ 516 (998)
+|.||++.+++| +|||||+|+++|+|+|++|||||||||+|||++++ +.
T Consensus 675 -----------------------------~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~IDQsiS~nl~~~~~~~~ 725 (761)
T PRK09209 675 -----------------------------APDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRA 725 (761)
T ss_pred -----------------------------CCCCChhHHHHHhhhHhhCCHHHHHHHHHHHcccccccccCceeCCCCCCH
Confidence 356788889999 99999999999999999999999999999999964 68
Q ss_pred HHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 517 AKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 517 ~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
++|.++|++||++|||| +||+|+++..
T Consensus 726 ~~l~~~y~~Awk~GlKt-~YY~Rt~~~~ 752 (761)
T PRK09209 726 SELLDLHMTAWKEGLKT-TYYVRSTDID 752 (761)
T ss_pred HHHHHHHHHHHHhCCCe-EEEeeccCcc
Confidence 99999999999999999 7999998753
No 10
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1.3e-107 Score=987.96 Aligned_cols=439 Identities=28% Similarity=0.454 Sum_probs=411.4
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|++|++|+|
T Consensus 274 sG~vp~lk~~d~~~~~v~QgG~R~GA~~vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~w~L 353 (753)
T PHA02572 274 TGVIPFWKHFQTAVKSCSQGGIRGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITL 353 (753)
T ss_pred CChhhHHHHHHHHHHHHhcCCcccCceEEEEeCCCcCHHHHHHHhcccCcchhhhhhhhhHhhcCHHHHHHHHcCCCEEE
Confidence 34568888888875 44677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCC-cchhh---chhHHHHHHHHHHcC-cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689 149 MCPNTCRG-LSDSW---GEKFDDLYKKYEAEG-KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC 223 (998)
Q Consensus 149 f~P~~~~~-L~~~y---g~~F~~~Y~~~e~~g-~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~ 223 (998)
|+|+++++ |.+.| |++|+++|+++|+++ ..+++|+||+||++|++++|+||+|||+|+|++|+++|+ .|+|++
T Consensus 354 f~P~~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~AreLw~~I~~~~~etG~Pyi~f~D~~N~~~~~--~g~I~~ 431 (753)
T PHA02572 354 FSPHDVGGELYDAYFADQDRFRELYEALEKDPSVRKKRIKAQELFLLLLKERSETGRIYIMFIDHCNNHSPF--KDPIRQ 431 (753)
T ss_pred eCCccCccchhhhhccchhHHHHHHHHHHhcccceeEEEeHHHHHHHHHHHHhccCCcceEeehhhhhcCcc--cCceee
Confidence 99999998 99988 599999999999987 458999999999999999999999999999999999987 899999
Q ss_pred cCCccceecccCC-------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhh
Q psy1689 224 SNLCTEIVEYTSK-------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMR 296 (998)
Q Consensus 224 sNpC~EI~l~~~~-------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~ 296 (998)
||||+||+||+.+ +++++||||||||++| ||++.|+++|+++||+||+|||.+.||++++ +++++
T Consensus 432 SNlC~Ei~l~~~~~~~~d~~~e~~~CNL~SINL~~~-------~D~~~l~~~v~~avr~LDnVID~~~yP~~~~-~~~~~ 503 (753)
T PHA02572 432 SNLCCEIALPTKPLNHIDGEGEIALCTLSAIVLGNF-------EDQDEIEELAEVAVRALDNLLDYQDYPVPAA-LKAKK 503 (753)
T ss_pred cCCCccccCCCCccccccCCCceEEEECHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHhccCCChHHH-Hhhhh
Confidence 9999999999987 8899999999999998 6899999999999999999999999999999 99999
Q ss_pred cCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC-
Q psy1689 297 HRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT- 375 (998)
Q Consensus 297 ~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~- 375 (998)
+|+||||+|||||+|+++|++|+|+|| +++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+++.|...+.
T Consensus 504 ~R~IGLGv~Glad~L~~lgi~Y~S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~~~ 582 (753)
T PHA02572 504 RRSLGVGVTNYAHYLAKNFASYEDANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDE 582 (753)
T ss_pred cCccccchhHHHHHHHHCCCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchhhh
Confidence 999999999999999999999999999 999999999999999999999999999999999999999999998875331
Q ss_pred -----CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCC
Q psy1689 376 -----DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450 (998)
Q Consensus 376 -----~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~ 450 (998)
..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|+++.
T Consensus 583 ~~~~~~~~dW~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s~~~~r~~~~G~~~~~~p~l~--------- 653 (753)
T PHA02572 583 LVAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKEGPFNQVVPNVE--------- 653 (753)
T ss_pred hcccchhhhHHHHHHHHHHhCccccceeeeCCcHHHHHHhCCCCccCcccccEEEEEecCceEEEeCCCHH---------
Confidence 247999999999999999999999999999999999999999999999999999999999987752
Q ss_pred cHHHHHHHhhcCCcccccCCCChhhhhhcccccCC---ChHHHHHHHHHhCCccccccceeEeecCC-------CHHHHH
Q psy1689 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI---PQKTVLDMAADRGAFIDQSQSLNIYMAEI-------NYAKMS 520 (998)
Q Consensus 451 ~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei---~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-------t~~~i~ 520 (998)
+++++|+||||| +|+++|+|+|+||||||||||+|||+..+ +.++|.
T Consensus 654 -----------------------~~~~~ykta~~i~~~~~~~~i~~~A~rq~~IDQsqS~nl~~~~~~~~~~~~~~~~l~ 710 (753)
T PHA02572 654 -----------------------TLKDLYDLLWDLAKKGNKGYLTQVAIMQKFVDQAISANTSYDPENYPNGKVPMSVML 710 (753)
T ss_pred -----------------------HHHHHHHhHHHhcccChHHHHHHHHHHhccCchhhcceeeecCCcCcccccCHHHHH
Confidence 234589999999 99999999999999999999999998642 578999
Q ss_pred HHHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689 521 SMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552 (998)
Q Consensus 521 ~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~ 552 (998)
++|++||++|||| +||+|+++++++++..+.
T Consensus 711 ~~~~~Aw~~GlKT-~YY~rt~~~~~~~~~~~~ 741 (753)
T PHA02572 711 DDLLYFYYYGGKT-LYYHNTRDGKGTEDYEIE 741 (753)
T ss_pred HHHHHHHHhCCce-EeecCccccccccccccc
Confidence 9999999999999 799999999999998876
No 11
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.9e-107 Score=982.83 Aligned_cols=443 Identities=28% Similarity=0.472 Sum_probs=412.1
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+|
T Consensus 273 sG~vp~mk~~d~~~~~v~QgG~RrGA~~vyL~~wHpDI~~FL~~K~~~g~e~~r~~~l~~sv~ipD~FM~~v~~d~~w~L 352 (758)
T PRK09103 273 TGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITL 352 (758)
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcceEEEecCCCccHHHHHHhcccCCchhhhHhhCchhhccCHHHHHHHHcCCCeEE
Confidence 44578888888875 44677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhh---chhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceee
Q psy1689 149 MCPNTCRGLSDSW---GEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKC 223 (998)
Q Consensus 149 f~P~~~~~L~~~y---g~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~ 223 (998)
|+|+++++|.+.| |++|+++|.++++++. .+++|+||+||++|++++++||.||++|+|++|+++|+ ++.|+|++
T Consensus 353 f~P~~~~~l~~~~~~~~~ef~~~Y~~~e~~~~~~~~~v~AreLw~~I~~~~~etG~pfi~fkD~~N~~~p~~~~~g~I~~ 432 (758)
T PRK09103 353 FSPSDVPGLYDAFFADQDEFERLYTKYEQDDSIRKKRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPKVAPVRQ 432 (758)
T ss_pred eCccccccccccccchhHHHHHHHHHHHhcCCeeeEEEeHHHHHHHHHHHhcCcCCceeeechhhhhcCCCCccCCeeee
Confidence 9999999999988 5899999999998874 67999999999999999999999999999999999995 68999999
Q ss_pred cCCccceecccCC--------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q psy1689 224 SNLCTEIVEYTSK--------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNM 295 (998)
Q Consensus 224 sNpC~EI~l~~~~--------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~ 295 (998)
||||+||+||+.| +++++||||||||++| ||++.|+++|+++||+||+|||.+.||+|+++++++
T Consensus 433 SNlC~Ei~l~~~p~~~~~~~~~e~~vCNLgSINL~~~-------~d~~~l~~~v~~avr~LDnVID~~~yP~~~~~~~n~ 505 (758)
T PRK09103 433 SNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAI-------NSLDELEELADLAVRALDALLDYQDYPIPAAKRGAM 505 (758)
T ss_pred cCcccccccCCcccccccccCCCeeEEEhHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 9999999999875 7889999999999998 588999999999999999999999999999999999
Q ss_pred hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCC-
Q psy1689 296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP- 374 (998)
Q Consensus 296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p- 374 (998)
++|+||||+|||||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+++.|...+
T Consensus 506 ~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~~ 585 (758)
T PRK09103 506 GRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLD 585 (758)
T ss_pred hcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred -----CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689 375 -----TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449 (998)
Q Consensus 375 -----~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~ 449 (998)
...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|.+..++|.+
T Consensus 586 ~~~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPTgS~S~i~g~s~giEP~~s~~~~k~~~~g~~~~~~p~~--------- 656 (758)
T PRK09103 586 AICNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILKQVVPDY--------- 656 (758)
T ss_pred ccccccchhhHHHHHHHHHHhCccccceeecCCcHHHHHHhCcCCCcCccccceeeeeccCceeeecCCCH---------
Confidence 134799999999999999999999999999999999999999999999999998888776665544
Q ss_pred CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCC-ChHHHHHHHHHhCCccccccceeEeecC-------CCHHHHHH
Q psy1689 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQSLNIYMAE-------INYAKMSS 521 (998)
Q Consensus 450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-------~t~~~i~~ 521 (998)
++++..|+++|+| +|+++|+|+|++|||||||||+|||+++ .+.++|.+
T Consensus 657 -----------------------~~~~~~y~~~~~i~~~~~~I~~~A~rQ~~VDQsqS~nl~~~~~~~~~~~~t~~~l~~ 713 (758)
T PRK09103 657 -----------------------ERLKDAYELLWEMPNNDGYLQLVGIMQKFVDQSISANTNYDPSRFPSGKVPMKQLLK 713 (758)
T ss_pred -----------------------HHHHHHHHHHHhccChHHHHHHHHHHhhhcchhhcceeeecccccccCCCCHHHHHH
Confidence 2334568889999 5899999999999999999999999842 47899999
Q ss_pred HHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689 522 MHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552 (998)
Q Consensus 522 ~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~ 552 (998)
+|++||++|||| +||+|+++++++++||+.
T Consensus 714 ~~~~Aw~~GlKT-~YY~rs~~~~~~~~~~~~ 743 (758)
T PRK09103 714 DLLTAYKFGVKT-LYYHNTRDGAEDAQDDLQ 743 (758)
T ss_pred HHHHHHHhCCce-EeecCchhhhhhhhhhcc
Confidence 999999999999 799999999999999987
No 12
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.2e-107 Score=981.19 Aligned_cols=428 Identities=32% Similarity=0.551 Sum_probs=396.8
Q ss_pred hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689 71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149 (998)
Q Consensus 71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf 149 (998)
....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++|++|+||
T Consensus 291 Gvvp~lk~~n~~~~~v~QgG~R~GA~avyL~~wHpDI~~FL~lK~~~g~e~~r~~~l~~~v~ipD~FM~~v~~d~~w~Lf 370 (764)
T PRK07088 291 GVIPWIKLYNDTAIAVDQLGKRKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLF 370 (764)
T ss_pred ChhhHHHHHHHHHHHHHhCCccccceeEEEeCCCccHHHHHHhccccchhHHHHhhChhhhccCHHHHHHHHcCCCeEEE
Confidence 3568888888875 456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----Ccchhhch----hHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCC
Q psy1689 150 CPNTCR-----GLSDSWGE----KFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG 219 (998)
Q Consensus 150 ~P~~~~-----~L~~~yg~----~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g 219 (998)
+|++++ +|.++||+ +|+++|.+++++ +..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|
T Consensus 371 ~P~~~~~~~g~~L~d~yg~~~~~ef~~~Y~~~~~~~~~~~~~v~AreLw~~I~~~~~eTG~Pyi~f~D~~Nr~np~~~~G 450 (764)
T PRK07088 371 DPHEIKKVKGYSLEDYYDEEDRKEFTKKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGTPFIFFRDTVNKANPNKHKG 450 (764)
T ss_pred CccccccccCccHHHHhccchhhhHHHHHHHHHhcccceeEEEeHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCC
Confidence 999987 69999999 999999999985 55789999999999999999999999999999999999999999
Q ss_pred ceeecCCccceecccCCC-----------------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHH
Q psy1689 220 TIKCSNLCTEIVEYTSKD-----------------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNL 276 (998)
Q Consensus 220 ~I~~sNpC~EI~l~~~~~-----------------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~L 276 (998)
+|++||||+||+||++++ ++++|||+||||++ ||++.|+++|+++||+|
T Consensus 451 ~I~~SNlCtEI~q~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vCNL~SinL~~--------~d~~~l~~~v~~avr~L 522 (764)
T PRK07088 451 MIYSSNLCHEIAQNMSESELLEEEIIDENGYYEVVQKIKAGDMVTCNLNSIVLGN--------VDDEELEEVIPTQIRML 522 (764)
T ss_pred eeeecCCchHhhccCCcccccccccccccccccccccccCCCceEEEcHHHHHhh--------hcHHHHHHHHHHHHHHH
Confidence 999999999999988763 34899999999986 48899999999999999
Q ss_pred HHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy1689 277 NKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 356 (998)
Q Consensus 277 D~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~ 356 (998)
|+|||++.||+|+++++|+++|+||||||||||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|+
T Consensus 523 DnVID~n~yP~~~a~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~ 602 (764)
T PRK07088 523 DNVISLNYYPVPEAEITSDKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFK 602 (764)
T ss_pred HHHHhcCCCchHHHHHHHHhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEe
Q psy1689 357 GSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436 (998)
Q Consensus 357 ~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~v 436 (998)
+|+|++|.+ |+.+... ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|..
T Consensus 603 ~S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~~~~~r~~-------- 670 (764)
T PRK07088 603 GSEWETGKY-FERRGYN---SERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFKRFFMEEK-------- 670 (764)
T ss_pred cChhhccch-hhccccc---cccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhhhHhhhhc--------
Confidence 999999986 5555433 3489999999999999999999999999999999999999999999998752
Q ss_pred ChhHHHHHHHcCCCcHHHHHHHhhcCCccc--ccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-
Q psy1689 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQ--DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE- 513 (998)
Q Consensus 437 n~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~--~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~- 513 (998)
+|+++ .+|.+|++.+++|+|||||+|++||+|+|++|+|||||||+|||+++
T Consensus 671 -------------------------~g~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~IDqsiS~nl~~~~~ 725 (764)
T PRK07088 671 -------------------------KGSFTPKTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPE 725 (764)
T ss_pred -------------------------CCceeecCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccccccccCceecCCC
Confidence 22222 34678888889999999999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 514 INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 514 ~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
.+.++|.++|++||++|||| +||+|+++..
T Consensus 726 ~t~~~l~~~y~~Awk~GlKt-~yY~R~~s~~ 755 (764)
T PRK07088 726 YKAKQILNLYIEAWKQGVKT-IYYVRNKSLE 755 (764)
T ss_pred CCHHHHHHHHHHHHHcCCCE-EEEEecCCcc
Confidence 69999999999999999999 6999998764
No 13
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1.6e-105 Score=983.60 Aligned_cols=431 Identities=34% Similarity=0.585 Sum_probs=399.3
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcC--Cce
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQW 146 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d--~~W 146 (998)
+....|.++|+... ...++|+|+||+|+||++|||||++||++|+++|++.+|++++|+||+|||+||++|++| ++|
T Consensus 367 sG~vp~lk~~~~~~~~v~QgG~RrGA~~vyL~~wH~DI~~FL~~K~~~g~e~~r~~~l~~~v~ipD~Fm~~v~~~~~~~w 446 (842)
T PRK12364 367 GGVIRWIKLANDTAVAVDQLGMRQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSW 446 (842)
T ss_pred CChHHHHHHHHHHHHHHHhCCcCCCceeEEEeCCCccHHHHHHHhccCCchhhhhhhcchhheeCHHHHHHHHhCCCCce
Confidence 34568888888775 456778999999999999999999999999999999889999999999999999999996 899
Q ss_pred eeeCCCCCC-----CcchhhchhHHHHHHHHHHcC-cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCc
Q psy1689 147 SLMCPNTCR-----GLSDSWGEKFDDLYKKYEAEG-KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGT 220 (998)
Q Consensus 147 ~Lf~P~~~~-----~L~~~yg~~F~~~Y~~~e~~g-~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~ 220 (998)
+||+|++++ +|.++||++|+++|.++++++ ..+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+
T Consensus 447 ~Lf~P~~~~~~~g~~l~~~yg~~f~~~Y~~~~~~~~~~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~g~ 526 (842)
T PRK12364 447 YLFCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPFTFNRDTVNRANPNKHKGM 526 (842)
T ss_pred EeecccccccccccchhhhcccHHHHHHHHHHhcccceeEEEEHHHHHHHHHHHHHHhCCCeeEehHHHhhcCCCCcCCe
Confidence 999999998 899999999999999999876 46799999999999999999999999999999999999999999
Q ss_pred eeecCCccceecccCC-----------------------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHH
Q psy1689 221 IKCSNLCTEIVEYTSK-----------------------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLN 277 (998)
Q Consensus 221 I~~sNpC~EI~l~~~~-----------------------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD 277 (998)
|++||||+||+||++| +++++|||+||||++|+. ||++.|+++|+++||+||
T Consensus 527 I~~SNlC~EI~q~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~CNL~SinL~~~~~-----~d~~~l~~~v~~~vr~LD 601 (842)
T PRK12364 527 IYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDFVVCNLASLSLGNIDL-----EDEEELEEVVRTVVRALD 601 (842)
T ss_pred eEEecCcccccccCCccccccccccccccccccccccCCCCeeEEEcHHHHhhcccc-----ccHHHHHHHHHHHHHHHH
Confidence 9999999999988643 578899999999999853 899999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy1689 278 KIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 357 (998)
Q Consensus 278 ~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~ 357 (998)
+|||.+.||+|+++++|+++|+||||+|||||+|+++|++|+|+||++|+++|||+|+++|++||++||+|+|+||.|++
T Consensus 602 nVID~~~yp~~~~~~~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~ 681 (842)
T PRK12364 602 NVIDLNFYPVPYAQITNKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEG 681 (842)
T ss_pred HHHhcCCCchHHHHHHHHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeC
Q psy1689 358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437 (998)
Q Consensus 358 S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn 437 (998)
|+|++|.+ |+.|+.. ..+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.+..
T Consensus 682 S~~~~g~~-~~~~~~~---~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~gieP~~~~~~~~~~--------- 748 (842)
T PRK12364 682 SDWQTGAY-FRKRGYT---SEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDPVMKRYFLEEK--------- 748 (842)
T ss_pred Chhhccch-hhccCcc---hhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCCccCcchHhHHHHhh---------
Confidence 99999987 5655433 3589999999999999999999999999999999999999999998776542
Q ss_pred hhHHHHHHHcCCCcHHHHHHHhhcCCcc--cccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-C
Q psy1689 438 HHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-I 514 (998)
Q Consensus 438 ~~l~~~L~~~g~~~~~~~~~i~~~~Gsv--~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~ 514 (998)
.|++ +.+|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||+|+ .
T Consensus 749 ------------------------~~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDqsiS~nl~~~~~~ 804 (842)
T PRK12364 749 ------------------------KGALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGVRQRHIDQAQSVNLYITNEF 804 (842)
T ss_pred ------------------------cCCcccccCccCCHHHHHHhccHhcCCHHHHHHHHHHHhccchhhccCceecCCCC
Confidence 1121 235788999999999999999999999999999999999999999996 6
Q ss_pred CHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689 515 NYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543 (998)
Q Consensus 515 t~~~i~~~~~~Awk~GlKt~~yY~R~~~~ 543 (998)
+.++|.++|++||++|||| +||+|+++.
T Consensus 805 t~~~l~~~y~~Awk~GlKt-~yy~R~~~~ 832 (842)
T PRK12364 805 TMRQVLDLYLLAWEEGVKT-IYYVRSKSL 832 (842)
T ss_pred CHHHHHHHHHHHHHcCCCE-EEEEccCCc
Confidence 9999999999999999999 799999775
No 14
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=4e-105 Score=958.44 Aligned_cols=432 Identities=25% Similarity=0.429 Sum_probs=395.1
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 220 sGvvp~mk~~d~~~~~v~QgG~RrGA~avyL~~wHpDI~~FL~~K~~~gde~~r~~~l~~~v~ipD~Fme~v~~d~~w~L 299 (699)
T PRK07632 220 KGVLPVAKLLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYM 299 (699)
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccceeEEEeCCCccHHHHHHHhccccchhhHHHhcchhheecHHHHHHHHcCCCeEE
Confidence 34568888888775 34567899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhch-----hHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689 149 MCPNTCRGLSDSWGE-----KFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222 (998)
Q Consensus 149 f~P~~~~~L~~~yg~-----~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~ 222 (998)
|+|+++ .+.||+ +|+++|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|+
T Consensus 300 f~P~~~---~~~yG~~~~~~~~~~~Y~~~~~~~~i~~~~I~AreL~~~I~~~~~etG~Pyi~f~D~~N~~np~~~~G~I~ 376 (699)
T PRK07632 300 FAPHTV---YKEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLMFKDNANKVHPNSNIGQIK 376 (699)
T ss_pred ECCccc---hhhcCcccccchHHHHHHHHHhcCCeeecccCHHHHHHHHHHHHHHhCCCeEEeHHHHhhcCCCCCCCcEE
Confidence 999976 566776 69999999998865 478999999999999999999999999999999999999999999
Q ss_pred ecCCccceecccC---------CCCc---ceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCc-HHH
Q psy1689 223 CSNLCTEIVEYTS---------KDEV---AVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYP-VEE 289 (998)
Q Consensus 223 ~sNpC~EI~l~~~---------~~~~---~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p-~~e 289 (998)
+||||+||+|++. .+++ .+||||||||++|+++ +.|+++|+++||+||+|||.+.|| +|+
T Consensus 377 ~SNlC~EI~~~~~~s~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~-------~~l~~~v~~avr~LdnViD~~~~p~~p~ 449 (699)
T PRK07632 377 MSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMES-------KKFRDSVHSGMDALTVVSDVANIQNAPG 449 (699)
T ss_pred ecCCcccccccCCccccccccccccccccceeecchhhHHHhccc-------chHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 9999999998752 2233 4999999999999863 579999999999999999999887 999
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD 368 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d 368 (998)
++++|+++|+||||+|||||+|+++|++|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus 450 ~~~~n~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~~~G~~-f~ 528 (699)
T PRK07632 450 VRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKY-FE 528 (699)
T ss_pred HHHHhhccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChhhccch-Hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999997 66
Q ss_pred ccCC---CC--------------CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcccc
Q psy1689 369 MWGV---TP--------------TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431 (998)
Q Consensus 369 ~~~~---~p--------------~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G 431 (998)
.|.. .| ...++|++|+++|++||+|||+++|||||||||+|+|+|+||||++++++.|...
T Consensus 529 ~~~~~~~~~~~~~v~~~~~~~~~~~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~s~i~~r~~~-- 606 (699)
T PRK07632 529 KYTTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYG-- 606 (699)
T ss_pred hhhhcccchhhhhhhhhhcccCCCchhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHHHHHHhhhcC--
Confidence 5531 11 2467999999999999999999999999999999999999999999998876531
Q ss_pred ceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEee
Q psy1689 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM 511 (998)
Q Consensus 432 ~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l 511 (998)
.+++++.+|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||+
T Consensus 607 -----------------------------~~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~IDQsiS~tl~~ 657 (699)
T PRK07632 607 -----------------------------NAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYV 657 (699)
T ss_pred -----------------------------CCCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHcccchhhhcCceec
Confidence 245667789999999999999999999999999999999999999999999
Q ss_pred cC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 512 AE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 512 ~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
++ .|.++|.++|++||++|||| +||+|+++..
T Consensus 658 ~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~ 690 (699)
T PRK07632 658 NSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS 690 (699)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence 96 59999999999999999999 9999997765
No 15
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.4e-104 Score=954.93 Aligned_cols=461 Identities=25% Similarity=0.353 Sum_probs=406.6
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhc-----------CCccc-----------------
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKN-----------TGKEE----------------- 120 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~-----------~g~~~----------------- 120 (998)
+....|.++|+.+. ...++|+||||+|+||++|||||++||++|++ .|++.
T Consensus 241 SG~Vsfm~~fd~~~~~V~QGG~RRGA~mv~L~~wHPDI~eFI~aK~~~~~~~~~l~~n~gde~~r~~a~ek~~~~~ls~~ 320 (858)
T PRK08115 241 SGSVSWLDDIAKLTHLVEQGGSRRGAQMIMLADWHPDILEFIISKMQNPRILRYLLENTEDEQIKRLVKEKLKFTPLSEV 320 (858)
T ss_pred CCeecHHHHHHHHHHHHHhCCCcccceEEEecCCcccHHHHHHhccccchhhhhhhcccccHhhhhhhhhhhcccccchh
Confidence 44568888888775 44567899999999999999999999998853 33331
Q ss_pred -------------------------------------------ccccccceeeecCHHHHHHHHcCCceeeeCCCCCC--
Q psy1689 121 -------------------------------------------FRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCR-- 155 (998)
Q Consensus 121 -------------------------------------------~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~-- 155 (998)
.+++++|+||+|||+||++|++|++|+||+|+...
T Consensus 321 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~lk~~~~~~~~~~~~l~n~NiSV~itD~FMeaVe~d~~w~L~~P~~~~~~ 400 (858)
T PRK08115 321 EEAMYQAIVNYKNIEGQGGFDTKVIKEAENKLRTGGTYTVNNPEFLTGANISVCLTKEFMEAVENDEEYELRFPDVENYT 400 (858)
T ss_pred hhhhhhhhhcccccccccccchhhhhhhhhhhccccccccccccccccceeEEEECHHHHHHHHcCCCEEEECCcccccc
Confidence 24567999999999999999999999999997642
Q ss_pred -CcchhhchhHHHH--HHHHHHcC---cceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCC-ceeecCCcc
Q psy1689 156 -GLSDSWGEKFDDL--YKKYEAEG---KFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG-TIKCSNLCT 228 (998)
Q Consensus 156 -~L~~~yg~~F~~~--Y~~~e~~g---~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g-~I~~sNpC~ 228 (998)
.+.+.||++|.+. |.+++..+ +.+++|+||+||++|++++|+||+|||+|+|++|++||+++.| +|++||||+
T Consensus 401 ~~~~~~Y~~~~~~~gd~~~~e~~g~~~~v~~~I~AReLw~~I~~~a~etGePgI~F~D~iNr~nn~~~~g~~I~aTNPCg 480 (858)
T PRK08115 401 EEEMEIYNEEWHEVGDVREWEKMGYPVRTYRKIKAKELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCG 480 (858)
T ss_pred hhhHhhhccccccchhHHHHhhcccccceeEEEcHHHHHHHHHHHHHHhCCCeEEEHHHhhhcCCccccCCeeeecCccc
Confidence 3556788888766 67777766 5679999999999999999999999999999999999998888 899999999
Q ss_pred ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689 229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 308 (998)
Q Consensus 229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa 308 (998)
||++++ +++|||+||||++|++.+++.|||+.|+++|+++|||||+|||.+.||+|++++.++++|+||||+||||
T Consensus 481 EqpL~p----~~sCNLgSINL~kfV~~~~~~fD~~~L~~~V~~avRfLDnVID~n~yPl~e~~~~~~~~R~IGLGvmGLA 556 (858)
T PRK08115 481 EQPLAP----YSVCNLAAINLANMADKETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVGLGVMGLH 556 (858)
T ss_pred cccCCC----CcccchHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHhhhcCCeeechhhHH
Confidence 987653 6899999999999997545689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689 309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388 (998)
Q Consensus 309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~ 388 (998)
|+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++.+.|...+.....|++|+++|+
T Consensus 557 D~L~~lgIpYdSeEA~~l~~~I~e~I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~~~~~~~~~~~Lre~I~ 636 (858)
T PRK08115 557 DLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFINTGYMKKMPEDIREDIL 636 (858)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhhccccccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987655544322212335899999999
Q ss_pred hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI 468 (998)
Q Consensus 389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~ 468 (998)
+||+|||++||||||||||+|+|+|+||||+|++.|.|++..|+|+++|+++++.+.+.+.+
T Consensus 637 k~GiRNS~ltaIAPTGSiS~Iag~SsGIEPifs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~------------------ 698 (858)
T PRK08115 637 KYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQEYLDKHPE------------------ 698 (858)
T ss_pred HhCcchhceeeeCChHHHHHHhCCCcccCcCeeeeEEEEeccCceEEEchHHHHHHHHhCCC------------------
Confidence 99999999999999999999999999999999999999999999999999987766443211
Q ss_pred CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689 469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547 (998)
Q Consensus 469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~ 547 (998)
..|+++..+|+||+||+|++||+|||++|+|||||||+|||+|+ .++++|.++|++||++||||+|||++.++..++.
T Consensus 699 -~~~~~l~~~F~TA~eI~p~~hI~mqAa~Qk~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL 777 (858)
T PRK08115 699 -ADENHLPEWFISAMELKPEAHADVQCIIQRWVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVL 777 (858)
T ss_pred -CCchhHHHhcccHhhCCHHHHHHHHHHHccccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceee
Confidence 13566677999999999999999999999999999999999996 5899999999999999999999999999988887
Q ss_pred chhhhH
Q psy1689 548 QFTIDK 553 (998)
Q Consensus 548 ~~~~~~ 553 (998)
....+.
T Consensus 778 ~~~~~~ 783 (858)
T PRK08115 778 TLKAEE 783 (858)
T ss_pred eecccc
Confidence 655443
No 16
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.1e-104 Score=950.28 Aligned_cols=434 Identities=24% Similarity=0.394 Sum_probs=388.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 221 sGvvp~mk~~~~~~~~v~QgG~RrGA~~vyL~~wHpDI~eFL~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~L 300 (721)
T PRK07187 221 TGIIPVMKLLEDSFSYANQLGQRQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMAL 300 (721)
T ss_pred CChHhHHHHHHHHHHHHHcCCcccCceEEEEeCCCccHHHHHHHhccccchhhhhccchHHhcccHHHHHHHHcCCCeEe
Confidence 34578888887774 55677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHH-----HHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689 149 MCPNTCRGLSDSWGEKFD-----DLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~-----~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~ 222 (998)
|+|+++ .++||++|+ +.|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|+
T Consensus 301 f~P~~~---~~~yg~~~~~~~~~~~Y~~~~~~~~i~k~~V~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~~~~G~I~ 377 (721)
T PRK07187 301 FSPYDI---KREYGKPMSDISITEEYYNLLANPAIKKTYISARKLFQTIAELHFESGYPYLLFDDTVNKRNPHAKKGRIV 377 (721)
T ss_pred ECcchh---hHhhCcchhhhhhHHHHHHHHhccccceeEecHHHHHHHHHHHHHHHCCCeEEEhHHHhhcCCcccCCcee
Confidence 999875 578998664 46888887665 456799999999999999999999999999999999999999999
Q ss_pred ecCCccceecccCCCC------------cceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCC-cHHH
Q psy1689 223 CSNLCTEIVEYTSKDE------------VAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEE 289 (998)
Q Consensus 223 ~sNpC~EI~l~~~~~~------------~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~-p~~e 289 (998)
+||||+||+|++.|++ +++||||||||++|+.+ .++|+++|+++||+||+|||.+.+ |+|+
T Consensus 378 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSiNL~~~v~~------~~~~~~~v~~avR~LDnVId~~d~~~~p~ 451 (721)
T PRK07187 378 MSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCNLGSLNIAKAMES------GPEFEQLIYTSIRALDRVSRVSDLSCAPS 451 (721)
T ss_pred eccccccccccCCchhcccccccccCCCcceeeCHHHHHHHHhcc------hhhHHHHHHHHHHHHHHHhhhhccCccHH
Confidence 9999999999987753 68999999999999852 257889999999999999999865 7899
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDM 369 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~ 369 (998)
++++|+++|+||||+|||||+|+++||+|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.+ |+.
T Consensus 452 ~~~~n~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~ 530 (721)
T PRK07187 452 IEKGNAANHAVGLGAMNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDK 530 (721)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 232
Q ss_pred --------cCC--------------CCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEE
Q psy1689 370 --------WGV--------------TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 427 (998)
Q Consensus 370 --------~~~--------------~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~ 427 (998)
|.. .....++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~~~~R~ 610 (721)
T PRK07187 531 YTKEDAKKWTPKTAKVKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRK 610 (721)
T ss_pred hhhccccccCcchhhhhhhhhhccccccchhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhhhheee
Confidence 321 1113578999999999999999999999999999999999999999999999998
Q ss_pred ccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhc-ccccCCChHHHHHHHHHhCCccccccc
Q psy1689 428 VLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFIDQSQS 506 (998)
Q Consensus 428 ~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~VDqs~S 506 (998)
..++..+.+ +.+.+|++.+++| +|||||+|++||+|+|++|||||||||
T Consensus 611 ~~~~~~~~~------------------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~IDqsiS 660 (721)
T PRK07187 611 EGKLGRIYV------------------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHVDQAIS 660 (721)
T ss_pred ccCCceEEc------------------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhcccccc
Confidence 654332221 1234677778888 999999999999999999999999999
Q ss_pred eeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 507 LNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 507 ~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
+|||+++ ++.++|.++|++||++|||| +||+|++...
T Consensus 661 ~tl~~~~~~t~~dl~~~y~~Awk~GlKt-~YY~Rt~~~~ 698 (721)
T PRK07187 661 LTLFMTDQATTRDLNKAYIQAFKQKCAS-IYYVRVRQDV 698 (721)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeehhhh
Confidence 9999996 58999999999999999999 8999996544
No 17
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=3.5e-101 Score=922.03 Aligned_cols=501 Identities=28% Similarity=0.425 Sum_probs=444.4
Q ss_pred eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCC--cchhhhhhHHHHHHHH
Q psy1689 5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRG--LSDSWGEKFDDLYKKY 82 (998)
Q Consensus 5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~--L~~s~g~~F~~lY~~~ 82 (998)
.++|+-...-+++.+.+.=+ |.-++...--|+.++ +.+++..+.. .++ -..+....|.++|+..
T Consensus 77 ssCfv~~v~Ds~~~I~~~~~----~~a~i~k~GGGvG~~---~s~iRp~G~~-------i~g~~g~ssG~v~~~~~~d~~ 142 (586)
T TIGR02504 77 SACFVLPVEDDMESIFEAAK----EAALIFKRGGGVGYN---FSTLRPKGAK-------VSGTGGVASGPVSFMRVFDAA 142 (586)
T ss_pred eeeECCCCCCCHHHHHHHHH----HHHHHHhcCCceeec---ccccCCCCCc-------cCCCCCCCCCchhHHHHHHHH
Confidence 45555444556777665544 666777777777765 4455544431 111 1235567888888887
Q ss_pred h-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhh
Q psy1689 83 E-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSW 161 (998)
Q Consensus 83 E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~y 161 (998)
. ...++|+||||+|+||++|||||++||++|+++++ .+++|+||+|||+||++|++|++|+||+|.++..+.++|
T Consensus 143 ~~~v~qgG~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~----~~~~n~sv~i~D~Fm~~v~~d~~w~L~~p~~~~~~~~~y 218 (586)
T TIGR02504 143 AGVIKQGGTRRGAQMGILDVWHPDIEEFIEAKKKEGK----LTNFNISVGVTDAFMEAVEADEEYKLRNPRTGEEIEELA 218 (586)
T ss_pred HHHHHcCCcccCceEEEEeCCCchHHHHHHhcccccc----hhcceehcccCHHHHHHHHcCCCeEEECCCccccccccc
Confidence 5 44567899999999999999999999999987664 679999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcce
Q psy1689 162 GEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAV 241 (998)
Q Consensus 162 g~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~ 241 (998)
| | +..+..+++|+||+||++|++++|+||+|||+|+|++|+++|+++.|+|++||||+||+|++ .++
T Consensus 219 ~--~-------~~~~~~~~~v~Arel~~~I~~~~~~tGePgi~f~D~~N~~~~~~~~~~i~~tNpC~Ei~l~~----~~~ 285 (586)
T TIGR02504 219 E--L-------DPKNKVYKEVPARELWDKIVEAAWKSAEPGLLFIDTINKWHPCPYGGRINATNPCGEQPLLP----YES 285 (586)
T ss_pred c--c-------ccccceeeEEEHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCccCCceeeccCCccccccC----Ccc
Confidence 8 2 34566789999999999999999999999999999999999999999999999999999874 358
Q ss_pred eeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCH
Q psy1689 242 CNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN 321 (998)
Q Consensus 242 CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ 321 (998)
|||+||||++|+.+....||++.|+++|+++||+||+|||++.||+|++++.+++.|+||||+|||||+|+++|++|+|+
T Consensus 286 CnL~SiNL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlGv~Glad~L~~lgi~y~S~ 365 (586)
T TIGR02504 286 CNLGSINLAKFVKNGFGSFDFERLREVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDSE 365 (586)
T ss_pred cchHHhhHHHHhhCCCCccCHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHhcCCccccchhHHHHHHHHcCCCcCCH
Confidence 99999999999986544699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccC
Q psy1689 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 401 (998)
Q Consensus 322 ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaia 401 (998)
||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.+++..+ + ...|++|++.+++||+|||++||||
T Consensus 366 ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~---~--~~~~~~L~~~i~~~G~RNs~l~aia 440 (586)
T TIGR02504 366 EARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI---P--SALPAELREAIAKYGIRNAQLTTIA 440 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc---c--ccChHHHHHHHHHhCCCccceeeeC
Confidence 9999999999999999999999999999999999999999999873322 2 2369999999999999999999999
Q ss_pred CccchhhhcCCcccccccccceEEEEcccc-ceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcc
Q psy1689 402 PTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYK 480 (998)
Q Consensus 402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G-~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~ 480 (998)
||||||+++|+|+||||+|+++|.|++..| ++.++|+++.+.|++.|+++++++..+. .+|++++++. |++++.+|+
T Consensus 441 PTgtiS~i~g~S~gieP~~a~~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~~~-~~gs~~~~~~-p~~~~~~f~ 518 (586)
T TIGR02504 441 PTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKYVD-EKGTVEGAPG-PEELPKVFV 518 (586)
T ss_pred CCchhhhhcCCCCccccchhhhhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHHHH-cCCCcccCCC-chhHHhhcc
Confidence 999999999999999999999999998876 8999999999999999999999988654 5799999999 999999999
Q ss_pred cccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689 481 TVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543 (998)
Q Consensus 481 tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~ 543 (998)
||+||+|++||+|+|++|||||||||+|||+|+ .+.++|.++|++||++||||+|||...++.
T Consensus 519 tA~di~~~~~i~~~a~~Q~~vD~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR~~s~~ 582 (586)
T TIGR02504 519 TANDVSPEDHVLMQAAIQPWVDSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYRDGSRS 582 (586)
T ss_pred CcccCCHHHHHHHHHHHcCcccccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCcC
Confidence 999999999999999999999999999999996 589999999999999999999999444333
No 18
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=3.2e-101 Score=940.73 Aligned_cols=506 Identities=22% Similarity=0.317 Sum_probs=432.3
Q ss_pred eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCCcchhhhhhHHHHHHHHh-
Q psy1689 5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE- 83 (998)
Q Consensus 5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~L~~s~g~~F~~lY~~~E- 83 (998)
.|.-+++ .-+++..+++=+ |.-++...--|+.++ +.+++..+... +- +-..+....|.++|+...
T Consensus 151 sCFvl~v-~Dsle~I~~~~~----~~a~i~K~GGGvG~n---fS~LRp~G~~i--s~----gG~sSGpvsFmki~D~~~~ 216 (953)
T PRK06556 151 ACFILSV-DDSMESILNWYK----EEGMLFKGGSGTGTN---LSRIRSSKELL--SG----GGTASGPVSFMRGADASAG 216 (953)
T ss_pred eEEeCCC-CCCHHHHHHHHH----HHHHHHhcCCcEEEe---ccccCCCCCcC--CC----CCCCCChhhHHHHHHHHHH
Confidence 3333454 456777777755 566666655555533 34555544311 11 112355678999988886
Q ss_pred hhcccc-ccccceEEEecCCcccHHHHHHhhhcCCcc-------------------cccccccceeeecCHHHHHHHHcC
Q psy1689 84 AEGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKE-------------------EFRARDLFYGLWIPDEFMRRVESD 143 (998)
Q Consensus 84 ~~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~-------------------~~r~~~l~~sV~I~D~Fm~~v~~d 143 (998)
...++| +||||.|+||++|||||++||++|...... ..+.+|+|+||+|||+||++|++|
T Consensus 217 ~ikqGG~tRRGA~mv~L~vdHPDI~eFI~~K~~e~~k~~~l~~~~~~~d~~~~~~~~v~~~n~N~SV~vtD~FM~aV~~d 296 (953)
T PRK06556 217 TIKSGGATRRAAKMVILDVDHPDIEEFIETKAKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEFMRAVEND 296 (953)
T ss_pred HHHcCCCccCcceEEEecCCCccHHHHHHhcccchhhhhhhhhcccccccccccccccccccccceEEECHHHHHHHHcC
Confidence 445677 599999999999999999999999753210 014578899999999999999999
Q ss_pred CceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceee
Q psy1689 144 AQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKC 223 (998)
Q Consensus 144 ~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~ 223 (998)
++|.|++|. +|++.++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++
T Consensus 297 ~~~~L~~~~----------------------~g~v~~~v~AreLw~~I~~~aw~tGdPgi~F~D~iNr~~~~~~~g~I~a 354 (953)
T PRK06556 297 GEFGLRART----------------------DGEVIETVDAKELFRKIAEAAWECADPGIQYDDTINDWHTCPESGRINA 354 (953)
T ss_pred CCeEEeccc----------------------cCceeeeeeHHHHHHHHHHHHHHhCCCeEEechhhhhhCCCcccCceEe
Confidence 999999875 4667899999999999999999999999999999999999999999999
Q ss_pred cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
||||+||+++.. .+|||+||||.+|+.++ +.||++.|+++|++++++||++||.+.||+|++++.++++|+||||
T Consensus 355 SNpC~E~~l~~~----~sCNLgSINL~~fv~~~-~~fD~~~l~~aV~~avr~LD~vId~~~yP~~~i~~~~~~~R~IGLG 429 (953)
T PRK06556 355 SNPCSEYMFLDN----SSCNLASLNLMKFLRDD-GTFDVESFRHAVELVITAMEISICFADFPTEKIARNTRAFRQLGLG 429 (953)
T ss_pred ecCccccccCCc----ccccceeeEHHHhhccc-CccCHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHhccchhhh
Confidence 999999987642 47999999999999753 4799999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcc-Cccc--ccccC------CCC
Q psy1689 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQ-GILQ--YDMWG------VTP 374 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~-G~l~--~d~~~------~~p 374 (998)
+|||||+|+++||+|+|+||++++++||+.|+++|+++|++||+|+||||.|++|++.. +.+. ++.+. ..|
T Consensus 430 vmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~h~~~~~~~~~~~~~~ 509 (953)
T PRK06556 430 YANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKHAAANDAIRPLGEVD 509 (953)
T ss_pred hhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhhhhhhhhhhhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999998654 3332 22111 111
Q ss_pred C-----CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCC-cccccccccceEEEE-ccccceEEeChhHHHHHHHc
Q psy1689 375 T-----DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRR-VLSGEFQVVNHHLLRDLVEL 447 (998)
Q Consensus 375 ~-----~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~-S~gieP~~a~~y~R~-~~~G~~~~vn~~l~~~L~~~ 447 (998)
. ...+|++|++.+++||+||||+|+||||||||+|+|+ |+||||+|+++|.|+ +.+|+|.++|+++.++|+++
T Consensus 510 ~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~fa~v~~rk~~~~G~~~~vN~~~~~~L~~~ 589 (953)
T PRK06556 510 AALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPDFALVKYKKLVGGGSMKIVNQTVPRALKKL 589 (953)
T ss_pred hhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccceeeeeeEEeccCceeEEecHHHHHHHHHc
Confidence 1 2357999999999999999999999999999999998 999999999997776 46788999999999999999
Q ss_pred CCCcHHHHHHH--hhcCCcccccCCCChhhhhhccccc-------CCChHHHHHHHHHhCCccccccceeEeecC-CCHH
Q psy1689 448 GLWDDNMKDQL--IVNNGSIQDIEGIPQKLKDLYKTVW-------EIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYA 517 (998)
Q Consensus 448 g~~~~~~~~~i--~~~~Gsv~~~~~lp~~~k~~f~tA~-------ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~ 517 (998)
|++++++.+.+ +..+|+++++|.||++.+.+|+||+ ||+|++||+|||++|||||||||+|||+|+ +|++
T Consensus 590 G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~hI~m~Aa~Q~fID~aiSkTvnlp~~at~e 669 (953)
T PRK06556 590 GYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQPFLSGAISKTVNMPEDATVE 669 (953)
T ss_pred CCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHHHHHHHHHHhhhcccccceEEEcCCCCCHH
Confidence 99999876543 4567999999999999999999999 999999999999999999999999999995 6999
Q ss_pred HHHHHHHHHHHcCCceEEEEeeccccccccchhh
Q psy1689 518 KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 551 (998)
Q Consensus 518 ~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~ 551 (998)
||.++|++||++||||+|||+...+..++.....
T Consensus 670 dv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~~ 703 (953)
T PRK06556 670 DIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTSK 703 (953)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCcccceeeccc
Confidence 9999999999999999999988888888876543
No 19
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.9e-101 Score=928.94 Aligned_cols=431 Identities=26% Similarity=0.405 Sum_probs=387.7
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 223 sGvvp~mk~~d~~~~~v~QgG~RrGA~~vyL~~wHpDI~~FL~~K~~~gde~~R~~nl~~~v~vpD~Fm~~v~~~~~w~L 302 (720)
T PRK07306 223 SGVVPVMKLFEDSFSYSNQLGQRQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYL 302 (720)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcCcceEEEEeCCCccHHHHHHHhcccccchhhhcccchhhccCHHHHHHHHcCCCeEE
Confidence 44568888888875 44577899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhH-----HHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689 149 MCPNTCRGLSDSWGEKF-----DDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F-----~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~ 222 (998)
|+|.++ .++||++| ++.|+++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+ .|+|+
T Consensus 303 f~P~~~---~~~yG~~f~~~~~~~~Y~~~~~~~~i~~~~i~AreL~~~I~~~~~etG~Pyi~f~D~iNr~np~--~g~I~ 377 (720)
T PRK07306 303 FSPYSV---EKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYIINIDTANRANPI--DGKII 377 (720)
T ss_pred eCcchh---hhhcCccccchhHHHHHHHHhhcccceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCC--CCcee
Confidence 999875 57899988 678999988765 56899999999999999999999999999999999987 48999
Q ss_pred ecCCccceecccCCC------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-CcHHH
Q psy1689 223 CSNLCTEIVEYTSKD------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNF-YPVEE 289 (998)
Q Consensus 223 ~sNpC~EI~l~~~~~------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~-~p~~e 289 (998)
+||||+||+|++.|. +.++||||||||++|++. ..|+++|+++||+||+|||.+. ||+|+
T Consensus 378 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~~CNLgSINL~~~v~~-------~~~~~~v~~avR~LDnViD~~~~~p~p~ 450 (720)
T PRK07306 378 MSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNMMTS-------PDFGRSIETMVRALTFVTDSSNIDAVPS 450 (720)
T ss_pred ecccccccccCCCchhhccccccccCCCccEEECHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHHhhCCCCChH
Confidence 999999999987763 347999999999999863 3578999999999999999985 79999
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD 368 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d 368 (998)
+++.++++|+||||+||||++|+++||+|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus 451 ~~~~n~~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~ErG~~fp~f~~S~~~~G~~-f~ 529 (720)
T PRK07306 451 IKHGNSQAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSY-FD 529 (720)
T ss_pred HHHHHHhcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcChhhccch-hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 699999999999987 56
Q ss_pred ccCC---CC--------------CCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc-c
Q psy1689 369 MWGV---TP--------------TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-S 430 (998)
Q Consensus 369 ~~~~---~p--------------~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~-~ 430 (998)
.|.. .| ....+|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|... .
T Consensus 530 ~~~~~~~~~~~~~v~~~~~~~~~p~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g~S~gIePi~s~v~~r~~~~~ 609 (720)
T PRK07306 530 KYVTGDFVPKSDKVKELFKGIFIPTAADWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQRIEERQEKKI 609 (720)
T ss_pred hhhhcccCcchhhHHHhhhccCCCchhhHHHHHHHHHHhCcccccceeeCCccHHHHHhCCCCccccchhhHhhhhhhcC
Confidence 5521 11 2356899999999999999999999999999999999999999999999987632 1
Q ss_pred cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEe
Q psy1689 431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510 (998)
Q Consensus 431 G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~ 510 (998)
|.+. ...|.+|++.+++|+|||||+|++||+|+|++|||||||||+|||
T Consensus 610 g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~~I~~~A~~Qk~VDQsiS~tl~ 658 (720)
T PRK07306 610 GKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRKVIDVYAAATEHVDQGLSLTLF 658 (720)
T ss_pred Ccee-------------------------------ccCCCCchhHHHHhCcHHhCCHHHHHHHHHHHhccchhhhcCccc
Confidence 3222 134678888889999999999999999999999999999999999
Q ss_pred ecCC---------------CHHHHHHHHHHHHHcCCceEEEEeecccccc
Q psy1689 511 MAEI---------------NYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545 (998)
Q Consensus 511 l~~~---------------t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~ 545 (998)
+++. +.++|.++|++||++|||| +||+|+.....
T Consensus 659 ~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~~ 707 (720)
T PRK07306 659 MRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDDG 707 (720)
T ss_pred cCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence 9853 6789999999999999999 69999977643
No 20
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.4e-100 Score=906.85 Aligned_cols=471 Identities=32% Similarity=0.514 Sum_probs=418.2
Q ss_pred eEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCCCCcchhhhhhHHHHHHHHh-
Q psy1689 5 FAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGEKFDDLYKKYE- 83 (998)
Q Consensus 5 ~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~~~L~~s~g~~F~~lY~~~E- 83 (998)
.++|+-.-.-+++.+.+.=+ |.-++...--|+.++ +.+++..+... ... + ..+....|.++|+...
T Consensus 89 ssCfl~~v~Dsle~I~~~~~----~~a~l~k~gGGvG~~---~s~iR~~Gs~I----~~~-g-~ssG~v~f~k~~d~~~~ 155 (601)
T PRK09102 89 ISCFLNYVEDSLEGIVNTWN----ENVWLAKRGGGIGSY---WGNVRSIGEPI----RNN-G-KSSGIIPFIKVMDSLTL 155 (601)
T ss_pred eeEEeCCCCCCHHHHHHHHH----HHHHHHhhCCeeeec---ccccCCCCCcc----CCC-C-CCCCHHHHHHHHHHHHH
Confidence 34454333456666655443 556666666677665 55666655411 111 2 2255678888888886
Q ss_pred hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhch
Q psy1689 84 AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGE 163 (998)
Q Consensus 84 ~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~ 163 (998)
...++|+||||+|+||++|||||++||++|++.|++.+|++++|+||+|||+||++|++|++|+||+|.+
T Consensus 156 ~i~qgg~RrGA~~~~L~~~HpDI~~Fi~~K~~~g~~~~r~~n~n~sv~i~D~FM~~v~~d~~w~L~~p~~---------- 225 (601)
T PRK09102 156 AISQGSLRRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLISPKD---------- 225 (601)
T ss_pred HHHcCCccccceEEEEeCCCcCHHHHHHHhhccCcccccccCCeeEEEECHHHHHHHHcCCCeEEEcCCC----------
Confidence 4456789999999999999999999999999999998999999999999999999999999999999974
Q ss_pred hHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCC--CC-ceeecCCccceeccc-----C
Q psy1689 164 KFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQN--LG-TIKCSNLCTEIVEYT-----S 235 (998)
Q Consensus 164 ~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~--~g-~I~~sNpC~EI~l~~-----~ 235 (998)
+...++|+||+||++|++++|+||+|||+|+|++|+++|.++ .| +|++||||+||+|++ .
T Consensus 226 ------------~~~~~~i~Arel~~~I~~~~~~tG~Pgi~f~D~~N~~~p~~~~~~G~~I~~sNpC~Ei~l~~~~~~~~ 293 (601)
T PRK09102 226 ------------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVNRALPEVYKDLGLKVKASNLCSEITLPTGIDHLG 293 (601)
T ss_pred ------------CeEEEEecHHHHHHHHHHHHHHhCCCeEEEHHHhhhhCcccccccCCeEEeeCcccceecccccccCC
Confidence 345789999999999999999999999999999999988754 35 899999999999998 6
Q ss_pred CCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhh--cCCC--cHHHHHHHHhhcCCCccccchHHHHH
Q psy1689 236 KDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIID--VNFY--PVEEARNSNMRHRPIGIGVQGLADLF 311 (998)
Q Consensus 236 ~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId--~~~~--p~~e~~~~~~~~R~IGLGv~GLad~L 311 (998)
.+++++|||+||||++|+ |++.|.++++.++|+||+||| ++.+ |++++++.++++|+||||+|||||+|
T Consensus 294 ~~~~~~CnL~SINL~~~v-------~~~~~~~~v~~~vr~LDnvid~~i~~~p~~~~~~~~~~~~~R~IGLGvmGlad~L 366 (601)
T PRK09102 294 EDRTAVCCLSSLNLEYYD-------EWKDTDAFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRERSVGLGVMGFHSYL 366 (601)
T ss_pred CCceeeeeecceeHHHhc-------chhhHHHHHHHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCccccchhHHHHHH
Confidence 677999999999999997 467899999999999999998 4444 59999999999999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcC
Q psy1689 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHG 391 (998)
Q Consensus 312 ~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G 391 (998)
+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.| +++|
T Consensus 367 ~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~--------------------------------~~~G 414 (601)
T PRK09102 367 QSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDA--------------------------------AGYG 414 (601)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcch--------------------------------hhhC
Confidence 99999999999999999999999999999999999999999854 3689
Q ss_pred --CCcccccccCCccchhhhc-CCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689 392 --VRNSLLIAPMPTASTAQIL-GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI 468 (998)
Q Consensus 392 --~RNs~ltaiaPTgs~S~i~-G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~ 468 (998)
+|||++||||||||||+|+ |+|+||||+|+++|.|++.+|+|.++|++|.+.|+++|+|++++++.++.+.|++|++
T Consensus 415 ~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~~~~~~~~gsvq~~ 494 (601)
T PRK09102 415 VMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSVQHL 494 (601)
T ss_pred chhcccceeeeCCCcHHHHHcCCCCCCcccchhhheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhcCCCcccC
Confidence 9999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689 469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547 (998)
Q Consensus 469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~ 547 (998)
|.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++|||| +||+|+++..+++
T Consensus 495 ~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~-~yy~R~~~~~~~~ 573 (601)
T PRK09102 495 DFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRAD 573 (601)
T ss_pred ccCChhHHhhcCcHhhCCHHHHHHHHHHHcccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEcCchhhhhH
Confidence 999999999999999999999999999999999999999999996 48999999999999999999 6777999998887
Q ss_pred chh
Q psy1689 548 QFT 550 (998)
Q Consensus 548 ~~~ 550 (998)
++.
T Consensus 574 ~~~ 576 (601)
T PRK09102 574 KVS 576 (601)
T ss_pred Hhc
Confidence 764
No 21
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=5.5e-101 Score=923.04 Aligned_cols=431 Identities=26% Similarity=0.431 Sum_probs=388.9
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|.|+||.|+||++|||||++||++|+++|++..|++++++||+|||+||++|++|++|+|
T Consensus 229 sGvvp~mkl~d~~~~~v~Q~G~R~GA~avyL~~~HpDI~~FL~~K~~~gde~~R~~~l~~gV~ipD~Fme~v~~~~~~~L 308 (714)
T PRK08188 229 SGVIPVMKLLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMYL 308 (714)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCchHHHHHHHhhcccchhhhhhhchHHhccCHHHHHHHHcCCCeEe
Confidence 34568888887765 45567899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHH-----HHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689 149 MCPNTCRGLSDSWGEKFD-----DLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~-----~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~ 222 (998)
|+|.++ .++||++|+ +.|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||.+ |+|+
T Consensus 309 f~P~~~---~~~yG~~f~~~~~~~~Y~~~v~~~~i~k~~I~Arel~~~I~~~~~etG~Pyi~f~D~vNr~np~~--G~I~ 383 (714)
T PRK08188 309 FSPYDV---ERVYGKPFADISVTEKYDEMVADERIRKKKINAREFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRIN 383 (714)
T ss_pred eCcchh---hhhhcccccchhHHHHHHHHHhCCcceeeEeeHHHHHHHHHHHHHHhCCCeEEeHHHHHhhCCCC--Ccee
Confidence 999875 578998885 67999988765 467999999999999999999999999999999999986 8999
Q ss_pred ecCCccceecccCCC------------CcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCC-CcHHH
Q psy1689 223 CSNLCTEIVEYTSKD------------EVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNF-YPVEE 289 (998)
Q Consensus 223 ~sNpC~EI~l~~~~~------------~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~-~p~~e 289 (998)
+||||+||+|+++|. +.++||||||||++|+ |+++|+++|+++||+||+|||++. +|+|+
T Consensus 384 ~SNlC~EI~q~~~p~~~~~~~~~~~~g~~~sCNLgSiNL~~~~-------d~~~l~~~v~~avR~LD~ViD~~~~~p~p~ 456 (714)
T PRK08188 384 MSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGSLNIAHTM-------DSPDFGRTVETAIRALTAVSDMSHIRSVPS 456 (714)
T ss_pred eecccccccccCChhhhccccccccCCCcceEEChhhhHHHhc-------CHHHHHHHHHHHHHHHHHHHHhhcCCCCch
Confidence 999999999987663 3479999999999985 678999999999999999999996 69999
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD 368 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d 368 (998)
++++++++|+||||+||||++|+++||+|+|+||++|+++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus 457 ~~~~n~~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG~~f~~f~~S~~~~G~~-f~ 535 (714)
T PRK08188 457 IEKGNAASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEY-FD 535 (714)
T ss_pred HHHHHHhcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccChhhccch-hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 599999999999987 33
Q ss_pred c-----cCC--------------CCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc
Q psy1689 369 M-----WGV--------------TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL 429 (998)
Q Consensus 369 ~-----~~~--------------~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~ 429 (998)
. |.. ......+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|+..
T Consensus 536 ~y~~~~~~~~~~~v~~~~~~~~~~~p~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~~~T~sIePi~s~v~~R~~~ 615 (714)
T PRK08188 536 KYTQQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEG 615 (714)
T ss_pred hcchhccCcchhhhhhhhhhcccCCCcHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHcCCCCCcCcchhhheeeecc
Confidence 2 221 112356899999999999999999999999999999999999999999999999864
Q ss_pred c-cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCcccccccee
Q psy1689 430 S-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508 (998)
Q Consensus 430 ~-G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~t 508 (998)
. |++..++ |.++++.+++|+|||||+|+++|+|+|++|+|||||||+|
T Consensus 616 ~~g~~~~~~-------------------------------p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Qk~VDQsiS~t 664 (714)
T PRK08188 616 KIGRVYYPA-------------------------------PYMTNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLT 664 (714)
T ss_pred ccceEEeeC-------------------------------cccchhhHhHhCcHHhCCHHHHHHHHHHHcccchhhhcCc
Confidence 3 6555444 3455566789999999999999999999999999999999
Q ss_pred EeecC-CCHHHHHHHHHHHHHcCCceEEEEeecccccc
Q psy1689 509 IYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545 (998)
Q Consensus 509 l~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~ 545 (998)
||+++ .|.++|.++|++||++|||| +||+|+++...
T Consensus 665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~ 701 (714)
T PRK08188 665 LFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMAL 701 (714)
T ss_pred eecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence 99996 58999999999999999999 69999977643
No 22
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.8e-100 Score=929.71 Aligned_cols=423 Identities=27% Similarity=0.436 Sum_probs=395.1
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|++++ +++++|+||+|||+||++|++|++|+|
T Consensus 148 sGpvsfm~~~d~~~~~v~qgG~RRGA~m~~l~~~HpDI~~FI~~K~~~~----~~~~~n~sV~i~D~Fm~av~~d~~~~L 223 (752)
T PRK08665 148 SGPVSFMRVFDAATEAIKQGGTRRGANMGILRVDHPDIMEFITCKEDNG----ELTNFNISVAITEAFMEAVEADEEYDL 223 (752)
T ss_pred CCchhHHHHHHHHHHHHHhCCcccceeEEEEcCCCccHHHHHHhcccCC----ccccceeeeccCHHHHHHHHcCCCeEE
Confidence 55788999999886 4567789999999999999999999999998765 478999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT 228 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~ 228 (998)
|+|.+ |+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+
T Consensus 224 ~~p~~----------------------g~~~~~i~Ar~l~~~I~~~a~~~GePgi~f~D~iN~~n~~~~~g~I~~tNpCg 281 (752)
T PRK08665 224 INPRT----------------------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIESTNPCG 281 (752)
T ss_pred EcCCC----------------------ceeEEEEEHHHHHHHHHHHHHHhCCCeEEEHHHHhhcCCCCcCCcEEEecccc
Confidence 99963 56779999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689 229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 308 (998)
Q Consensus 229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa 308 (998)
||++++ +++|||+||||++||++ +.|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+||||
T Consensus 282 Eq~L~p----~~~CnLgSiNL~~~v~~--~~~D~~~l~~~v~~avr~LDnvId~~~~Pl~~~~~~~~~~R~IGLGv~Gla 355 (752)
T PRK08665 282 EQPLLP----YESCNLGSINLSKMVKN--GDVDWEKLREVVHLAVRFLDNVIDANKYPLPQIEEMTKGNRKIGLGVMGWA 355 (752)
T ss_pred ccccCC----CCceeccceeHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcCccccchhhHH
Confidence 988753 46899999999999963 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689 309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388 (998)
Q Consensus 309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~ 388 (998)
|+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|.++.+
T Consensus 356 d~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~----------------------- 412 (752)
T PRK08665 356 DMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL----------------------- 412 (752)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999976643
Q ss_pred hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccc-eEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467 (998)
Q Consensus 389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~-~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~ 467 (998)
.|+|||++||||||||||+|+|+|+||||+|+++|.|++.+|+ +.++|+++.+.|+++|+|++++++.+ ..+|++++
T Consensus 413 -~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~~~ 490 (752)
T PRK08665 413 -GPMRNATVTTIAPTGTISIIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSIQD 490 (752)
T ss_pred -ccccccceeeeCCccHHHhhcCCCCccCccccceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCccc
Confidence 3799999999999999999999999999999999999998887 57899999999999999999998886 46899999
Q ss_pred cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccc
Q psy1689 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546 (998)
Q Consensus 468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~ 546 (998)
++.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+|||+..++..++
T Consensus 491 ~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~~v 570 (752)
T PRK08665 491 IDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKHTDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDEQV 570 (752)
T ss_pred CCCCChHHHHhcCcHhhCCHHHHHHHHHHHccccchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcccce
Confidence 9999999999999999999999999999999999999999999995 689999999999999999999999666666666
Q ss_pred cch
Q psy1689 547 IQF 549 (998)
Q Consensus 547 ~~~ 549 (998)
...
T Consensus 571 l~~ 573 (752)
T PRK08665 571 LST 573 (752)
T ss_pred ecc
Confidence 543
No 23
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.4e-100 Score=922.41 Aligned_cols=423 Identities=25% Similarity=0.387 Sum_probs=391.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|... ..+++++|+||+|||+||++|++|+.|.|
T Consensus 303 sG~vsfm~~~d~~~~~i~QGG~RrGA~m~~L~~~HpDI~eFI~~K~~~---~~~~~n~n~sV~i~D~FM~~v~~d~~~~L 379 (771)
T PRK06406 303 SGPLSFMRIFDVTTDVIKQGGKRRGANMGILSYHHPDIMEFITSKDSE---NKVLSNFNISVAVTDEFFDKLDNDDYYPL 379 (771)
T ss_pred CChhhHHHHHHHHHHHHHcCCccccceEEEecCCCccHHHHHHhcccc---cchhhcCceeEEeCHHHHHHHHcCCCeEe
Confidence 45678999998886 456778999999999999999999999999643 24579999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT 228 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~ 228 (998)
++|. +|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||+
T Consensus 380 ~~P~----------------------~g~~~~~v~AreL~~~I~~~a~~tGePgi~F~D~iNr~n~~~~~G~I~~tNpCg 437 (771)
T PRK06406 380 RNPR----------------------NGKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRKNPVKNLGEIESTNPCG 437 (771)
T ss_pred ecCC----------------------CCceeeeecHHHHHHHHHHHHHHHCCCeEEEhHhHHhcCCCccCCceEeecccc
Confidence 9996 356789999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689 229 EIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 308 (998)
Q Consensus 229 EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa 308 (998)
||++++ +++|||+||||++|+.+ +.|||+.|+++|+++|||||+|||.+.||+|++++.++++|+||||+||||
T Consensus 438 Eq~L~p----~~sCnLgSINL~~~v~~--~~~D~~~l~~~v~~avr~LDnvID~~~yPl~~~~~~~~~~R~IGLGvmGla 511 (771)
T PRK06406 438 EQPLLP----YESCNLGSINLSKFVEN--GKIDWDRLRETVHIATRFLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFA 511 (771)
T ss_pred ccccCC----CcceechhhhHHHHhcc--cCCCHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHhhcCCceechHHHH
Confidence 997753 46999999999999963 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689 309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388 (998)
Q Consensus 309 d~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~ 388 (998)
|+|+++|++|+|+||++++++||++|+++|+++|++||+|+|+||.|++|.|.+.
T Consensus 512 d~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~f~~s~~~~~------------------------- 566 (771)
T PRK06406 512 DMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPAWYGSEWEKK------------------------- 566 (771)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCccchhhc-------------------------
Confidence 9999999999999999999999999999999999999999999999999987531
Q ss_pred hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccc-eEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467 (998)
Q Consensus 389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~-~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~ 467 (998)
..|+|||++||||||||||+|+|+|+||||+|+++|.|++.+|+ +.++|++|.+.|++.|+|++++++.+. ++|++|+
T Consensus 567 ~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa~~y~R~v~~g~~~~~vn~~l~~~l~~~g~~~~~~~~~i~-~~gs~~~ 645 (771)
T PRK06406 567 GIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKRGLYSEELMRKVA-ETGNLQN 645 (771)
T ss_pred CCcccccceeeeCCcchhhhhcCCCCccCccchhheEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHHH-hCCCccc
Confidence 24899999999999999999999999999999999999998875 689999999999999999999999875 6799999
Q ss_pred cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccc
Q psy1689 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546 (998)
Q Consensus 468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~ 546 (998)
+ .+|++++.+|+||+||+|++||+|||++|+|||||||+|||+|+ ++.++|.++|++||++||||+|||...++..++
T Consensus 646 ~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~vDqsiSkTinlp~~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qv 724 (771)
T PRK06406 646 I-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRYCDSGVSKTINLRYDATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQV 724 (771)
T ss_pred c-cCChHHHhhcccHHhCCHHHHHHHHHHHcccccCcccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccce
Confidence 9 79999999999999999999999999999999999999999995 689999999999999999999999666666566
Q ss_pred cchh
Q psy1689 547 IQFT 550 (998)
Q Consensus 547 ~~~~ 550 (998)
...+
T Consensus 725 l~~~ 728 (771)
T PRK06406 725 LYAG 728 (771)
T ss_pred eecc
Confidence 5553
No 24
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=3.2e-98 Score=914.47 Aligned_cols=502 Identities=21% Similarity=0.356 Sum_probs=423.0
Q ss_pred CCceeEEEecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCc-Ee-----eeCCCCCCCcchhhhhh
Q psy1689 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQ-WS-----LMCPNACRGLSDSWGEK 74 (998)
Q Consensus 1 R~ga~~vyl~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~-~t-----lf~P~~~~~L~~s~g~~ 74 (998)
|.||.+|||++|||||++||+||+ .|++|+++|++|++++.++++.|+.... |+ -|+|.. +..
T Consensus 275 RRGA~mv~LdvdHPDIeeFI~~K~---~ee~Kvaalv~gski~~k~lk~I~~A~~~~~G~~~~~~DP~~--------Npa 343 (1220)
T PRK07562 275 RRAAKMVIVDIDHPDIEEFIDWKV---KEEQKVAALVTGSKIVSKHLKAIMKACVNCEGDGDDCFDPAK--------NPA 343 (1220)
T ss_pred ccCceEEEecCCcccHHHHHHhcc---chhhhHHhhhhcchHHHHHHHHHHHHHHhccccccccCCccc--------cHH
Confidence 889999999999999999999999 4999999999999999999999997632 11 234433 333
Q ss_pred HHHHHHHHhhhc-------------cccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHH
Q psy1689 75 FDDLYKKYEAEG-------------LVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVE 141 (998)
Q Consensus 75 F~~lY~~~E~~~-------------~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~ 141 (998)
+.....++.+.. ..|..--.+-.|-..|..+.+. . ...+|+|+||+|||+||++|+
T Consensus 344 Lk~aI~~Ak~~~vP~~~I~RvI~~A~qg~~~~~f~~yd~~~~~e~y~--t---------v~~qN~N~SV~VtDeFM~aVe 412 (1220)
T PRK07562 344 LKREIKAAKKALVPENYIKRVIQFARQGYTDIDFPTYDTDWDSEAYL--T---------VSGQNSNNSVRVTDEFLRAVE 412 (1220)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhcccccccccccccccccchhc--c---------cccccccceeccCHHHHHHHH
Confidence 333333332111 1121111122233333322221 1 123689999999999999999
Q ss_pred cCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCce
Q psy1689 142 SDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTI 221 (998)
Q Consensus 142 ~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I 221 (998)
+|++|.|++|. +|++.++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|
T Consensus 413 ~d~~w~L~~p~----------------------~gkv~ktV~AReLw~kI~~aawetGdPgI~F~DtiN~~~~~~~~G~I 470 (1220)
T PRK07562 413 NDGDWNLTART----------------------DGKVAKTLKARDLWEKIGYAAWASADPGLQFNTTINDWHTCPASGPI 470 (1220)
T ss_pred CCCCeeeeccC----------------------CCceeeEeeHHHHHHHHHHHHHHHCCceEEEehhhhhcCCCccCCee
Confidence 99999999986 46778999999999999999999999999999999999999999999
Q ss_pred eecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCc
Q psy1689 222 KCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG 301 (998)
Q Consensus 222 ~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IG 301 (998)
++||||+||+++. + .+|||+||||.+|+++++..||++.|+++|++++++||++||++.||++++++.++++|+||
T Consensus 471 ~aSNPCsEi~lld---~-~aCNLaSINL~~Fv~~~~~~fD~e~l~~avrl~t~~LDi~id~~~yP~~ei~~~~~~~R~IG 546 (1220)
T PRK07562 471 RASNPCSEYMFLD---D-TACNLASLNLLTFRDEDTKRFDVEAYEHACRLWTVVLEISVLMAQFPSKEIAELSYEFRTLG 546 (1220)
T ss_pred EeecCcccccCCC---C-CcccchhhhHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHhcCCCee
Confidence 9999999998752 3 36999999999999865456999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcC------------ccCccc-cc
Q psy1689 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV------------SQGILQ-YD 368 (998)
Q Consensus 302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~------------~~G~l~-~d 368 (998)
||+||||++|+++||+|||+||++++++||+.|+++|+++|++||+|+|+||.|++|+| +.|.++ |+
T Consensus 547 LGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~lrv~r~h~~aa~g~~~gy~ 626 (1220)
T PRK07562 547 LGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHMLRVIRNHRRAAHGESEGYE 626 (1220)
T ss_pred ehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhhhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999996 333322 34
Q ss_pred ccCCCCC---------------CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCC-cccccccccceEEEEc-ccc
Q psy1689 369 MWGVTPT---------------DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRV-LSG 431 (998)
Q Consensus 369 ~~~~~p~---------------~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~-S~gieP~~a~~y~R~~-~~G 431 (998)
.+...|. ...+|++|++.+++||+|||++|+||||||||+|+|+ |+||||+|+++|.|+. .+|
T Consensus 627 ~~~~~p~~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIEP~fAlv~~kkl~gGg 706 (1220)
T PRK07562 627 GLSVNPVPLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGG 706 (1220)
T ss_pred ccccCcccccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcccCccceEEEEeccce
Confidence 4443331 2458999999999999999999999999999999998 9999999999976654 567
Q ss_pred ceEEeChhHHHHHHHcCCCcHHHHHHHhh--cCCcccccCCC--------------------------------------
Q psy1689 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIV--NNGSIQDIEGI-------------------------------------- 471 (998)
Q Consensus 432 ~~~~vn~~l~~~L~~~g~~~~~~~~~i~~--~~Gsv~~~~~l-------------------------------------- 471 (998)
+|.++|+++.++|+++||+++++.+.+.+ ..|+++++|.+
T Consensus 707 ~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~~~fdi~~~fn~~~lg 786 (1220)
T PRK07562 707 YFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALKSAFDIKFAFNKWTLG 786 (1220)
T ss_pred eEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 99999999999999999999888776644 36777665554
Q ss_pred ----------------------------------------------------Chhhhhhccccc--------CCChHHHH
Q psy1689 472 ----------------------------------------------------PQKLKDLYKTVW--------EIPQKTVL 491 (998)
Q Consensus 472 ----------------------------------------------------p~~~k~~f~tA~--------ei~~~~~I 491 (998)
++++..+|.+|. +|++++||
T Consensus 787 ~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~~g~~g~r~i~~~~Hi 866 (1220)
T PRK07562 787 EDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANPCGKIGKRYLSVESHI 866 (1220)
T ss_pred hhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhccccccccccccccCCHHHHH
Confidence 445566889985 99999999
Q ss_pred HHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchh
Q psy1689 492 DMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 550 (998)
Q Consensus 492 ~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~ 550 (998)
+|+|++|||||.+||+|||||+ +|++|+.++|++||++|||++++|+..++..++....
T Consensus 867 ~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~~~ 926 (1220)
T PRK07562 867 RMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLNSS 926 (1220)
T ss_pred HHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccccc
Confidence 9999999999999999999995 7999999999999999999999998888888887654
No 25
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=3e-98 Score=891.50 Aligned_cols=432 Identities=24% Similarity=0.356 Sum_probs=378.2
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|+ +..|++++|+||+|||+||++|++|++|+|
T Consensus 145 sG~v~fm~~~d~~~~~v~Qgg~RrGA~~~~L~~~HpDI~~Fi~~K~----~~~~~~~~n~sv~i~D~FM~~v~~d~~~~L 220 (595)
T PRK06948 145 PGVCAALDRFDRICAALPFRDGRRGAQMAVLRCDHPDLLAFVAAKR----GRARWTTFNLSVAVTDAFMQAVAQDLPWAL 220 (595)
T ss_pred CChhhHHHHHHHHHHHHHhCCCCccCeEEEEcCCCCCHHHHHHhcC----CccccccceeeEeECHHHHHHHHcCCCeEe
Confidence 45688999999886 4566799999999999999999999999997 346899999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
|+|.+.. +++|+.+. +++|. .+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|.+||||
T Consensus 221 ~~p~~~~---~~~~~~~~------~~~g~~~~~~v~Arel~~~I~~~~~~tGePgi~F~D~iN~~n~~~~~g~I~~tNpC 291 (595)
T PRK06948 221 RHRAPPR---RAAGGALR------GADGAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHERIDATNPC 291 (595)
T ss_pred eCCcccc---ccccccch------hccCcceeeEEcHHHHHHHHHHHHHHHCCCeEEeHhHHHhhCCCccCCcEEeecCC
Confidence 9998643 34554331 34555 68999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCcceeeecccccccccCC-----CCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcc
Q psy1689 228 TEIVEYTSKDEVAVCNLASIALNMYINP-----ADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI 302 (998)
Q Consensus 228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~-----~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGL 302 (998)
+||++++ +++|||+||||++||++ ....||+++|+++|+++||+||+|||++.||+|++++.++++|+|||
T Consensus 292 ~Ei~L~~----~~~CNLgSINL~~~v~~~~~~~~~~~~D~~~l~~~v~~avR~LDnvid~~~~p~~~~~~~~~~~R~IGL 367 (595)
T PRK06948 292 GEQPLPP----YGSCVLGPIDLSRFVRHPFGVGGEPRFDFAALATAVRIQVRMLDNALDLTRWPLAAHAREARQKRRIGV 367 (595)
T ss_pred CCcccCC----CCceeccceeHHHHhccccccccccccCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhcCCCcee
Confidence 9998764 57999999999999974 22479999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHH
Q psy1689 303 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382 (998)
Q Consensus 303 Gv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~ 382 (998)
|+|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|.+|.+.. ...|++
T Consensus 368 GvmGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~~---------~~~~~~ 438 (595)
T PRK06948 368 GVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRAG---------PPLPHA 438 (595)
T ss_pred cHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcccccc---------ccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999886421 124899
Q ss_pred HHHHHHhcCCCcccccccCCccchhhhc--CCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhh
Q psy1689 383 LKEKIAKHGVRNSLLIAPMPTASTAQIL--GNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV 460 (998)
Q Consensus 383 Lr~~i~~~G~RNs~ltaiaPTgs~S~i~--G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~ 460 (998)
|+++|++||+|||++||||||||||+|+ |+|+||||+|+++|+|++.+|++.... ++.+....
T Consensus 439 l~~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~fa~~y~R~~~~g~~~~~~-----------~~~~~~~~---- 503 (595)
T PRK06948 439 VCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARG-----------MRAENHAY---- 503 (595)
T ss_pred HHHHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccceeeeEEEEeccCCCcccc-----------eeeechhh----
Confidence 9999999999999999999999999998 589999999999999999888754211 11111100
Q ss_pred cCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEee
Q psy1689 461 NNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLR 539 (998)
Q Consensus 461 ~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R 539 (998)
..++.++..|++++++|+||+||+|++||+|||++|+|||||||+|||+|+ .+.++|.++|++||++||||++|| |
T Consensus 504 --~~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgit~~-R 580 (595)
T PRK06948 504 --RLFRSLRGERAALPDYFVTAADVAPADHLAMRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGITIF-R 580 (595)
T ss_pred --hhccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcccchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEEEEE-e
Confidence 012233445667788999999999999999999999999999999999996 599999999999999999997777 5
Q ss_pred cccccc
Q psy1689 540 TKPAAN 545 (998)
Q Consensus 540 ~~~~~~ 545 (998)
..+...
T Consensus 581 ~~~~~~ 586 (595)
T PRK06948 581 PDPALD 586 (595)
T ss_pred CCcccC
Confidence 554443
No 26
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=3e-94 Score=837.98 Aligned_cols=418 Identities=28% Similarity=0.409 Sum_probs=369.2
Q ss_pred ecCCcccHHHHHHhhccCcchhhhhhccccccccCHHHHHHhhcCCcEeeeCCCCC--C--CcchhhhhhHHHHHHHHh-
Q psy1689 9 LEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNAC--R--GLSDSWGEKFDDLYKKYE- 83 (998)
Q Consensus 9 l~~wH~di~~fl~lk~~~g~E~~r~~~l~~~~~i~d~f~~rv~~~~~~tlf~P~~~--~--~L~~s~g~~F~~lY~~~E- 83 (998)
+++...+++.+++.= .|.-++-..--|+.+ +++-..|.+. + +-..+....|.++|+...
T Consensus 37 ~~~~dds~~~I~~~~----~~~a~l~k~gGGvG~------------~~s~iRp~G~~i~~~~g~ssG~v~f~~~~d~~~~ 100 (464)
T cd02888 37 LPVEDDSIEGIFDAL----KEAALIFKRGGGVGY------------NFSRLRPKGDIVKSTGGVASGPVSFMRVFDAATG 100 (464)
T ss_pred cCCCCCCHHHHHHHH----HHHHHHHhcCCeEEe------------eccccCCCCCcccCCCCCCCChHhHHHHHHHHHH
Confidence 354434677777643 355555555455542 3333333211 1 112355678888888875
Q ss_pred hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhch
Q psy1689 84 AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGE 163 (998)
Q Consensus 84 ~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~ 163 (998)
...++|+||||+|+||++|||||++||++|+++++ +.|++++|+||+|||+||++|++|++|+||+|.++
T Consensus 101 ~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~-~~~~~~~n~sv~i~D~Fm~~v~~~~~w~L~~p~~~--------- 170 (464)
T cd02888 101 VIKQGGTRRGANMGVLDVDHPDIEEFIDAKMKEEK-TVVLQNFNISVAVTDAFMEAVENDEPWELRNPREP--------- 170 (464)
T ss_pred HHHhCCcccceeEEEEcCCCccHHHHHHHccccCc-ccccccceeEEEeCHHHHHHHHcCCCeEeeCcccc---------
Confidence 44567899999999999999999999999998775 45899999999999999999999999999999865
Q ss_pred hHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecccCCCCcceee
Q psy1689 164 KFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCN 243 (998)
Q Consensus 164 ~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CN 243 (998)
.++...++|+||+||++|++++|+||+|||+|+|++|+++++++.|+|++||||+||+|+. .++||
T Consensus 171 ----------~~~~~~~~v~Arel~~~i~~~~~~tG~Pgi~f~D~~N~~~~~~~~~~i~~sNpC~Ei~l~~----~~~Cn 236 (464)
T cd02888 171 ----------DTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTINRWNPLPGLGRINATNPCGEQPLLP----YESCN 236 (464)
T ss_pred ----------CCCceeeEeeHHHHHHHHHHHHHHHCCCeEEEhHHHHhhCCccccCceeeccCCcccccCC----CCccc
Confidence 2456789999999999999999999999999999999999999999999999999999874 46999
Q ss_pred ecccccccccCCCC--CCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCH
Q psy1689 244 LASIALNMYINPAD--KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCN 321 (998)
Q Consensus 244 L~SINL~~~v~~~~--~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ 321 (998)
|+||||++|+++++ ..||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||||+|+++|++|+|+
T Consensus 237 L~SiNL~~fv~~~~~~~~fD~~~l~~~v~~avr~LD~vid~~~~p~~~~~~~~~~~R~iGlG~~Glad~L~~~gi~y~S~ 316 (464)
T cd02888 237 LGSINLSKFVKNPFGGASFDFERLREAVRLAVRFLDNVIDVNRYPLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSE 316 (464)
T ss_pred chhhhHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHhhccCceeecHHHHHHHHHHcCCCCCCH
Confidence 99999999997533 2699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccC
Q psy1689 322 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM 401 (998)
Q Consensus 322 ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaia 401 (998)
||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.++++ ...+|++|++++++||+|||++||||
T Consensus 317 ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~-------~~~~w~~l~~~i~~~G~RNs~l~aiA 389 (464)
T cd02888 317 EARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVN-------AKELPDDVLEEIEKYGIRNAHLTTIA 389 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhc-------chhcHHHHHHHHHHhCcchhceeeeC
Confidence 99999999999999999999999999999999999999999998764 24689999999999999999999999
Q ss_pred CccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhccc
Q psy1689 402 PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKT 481 (998)
Q Consensus 402 PTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~t 481 (998)
||||||+|+|+|+||||+|
T Consensus 390 PTgs~S~i~g~s~gieP~~------------------------------------------------------------- 408 (464)
T cd02888 390 PTGTISLIAGTSSGIEPIF------------------------------------------------------------- 408 (464)
T ss_pred CcHHHHHHhCCCCCcCCCC-------------------------------------------------------------
Confidence 9999999999999999998
Q ss_pred ccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEe
Q psy1689 482 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYL 538 (998)
Q Consensus 482 A~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~ 538 (998)
+|++||+|||++|+|||||||+|||+|+ .++++|.++|++||++||||+|||+
T Consensus 409 ----~~~~~i~~~a~~Q~~iDqsiS~tin~~~~~t~~d~~~~y~~aw~~G~K~~t~yR 462 (464)
T cd02888 409 ----SPEDHVRMQAALQPWVDGAISKTINLPNDATVEDVEAVYLLAWKLGLKGITVYR 462 (464)
T ss_pred ----CHHHHHHHHHHHhccchhhhcceeecCCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 7899999999999999999999999995 5999999999999999999999994
No 27
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=4.4e-94 Score=850.23 Aligned_cols=399 Identities=29% Similarity=0.435 Sum_probs=364.9
Q ss_pred hhhhhHHHHHHHHhhh-c--cccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCce
Q psy1689 70 SWGEKFDDLYKKYEAE-G--LVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQW 146 (998)
Q Consensus 70 s~g~~F~~lY~~~E~~-~--~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W 146 (998)
+....|.++|+.+... . ++|+||||+|+||++|||||++||++|++++ +++++|+||+++|.||++++++.
T Consensus 140 sG~~~~m~~~d~~~~~i~~~qgg~RrGA~~~~L~~~HpDI~eFi~~K~~~~----~~~~~~~~v~~~d~f~~~~~~~~-- 213 (571)
T TIGR02510 140 NGADAFAPLFDNFIETFNKVAAAGRRGECAAYLDFEHGDFEELLGIQLEHP----ASAHLFWGFEKEDRWLEELIAGD-- 213 (571)
T ss_pred CCcchHHHHHHHHHHHHHHhhCCcCccceEEEEcCCcccHHHHHHhcccCC----CCCceeeeeccCHHHHHHHHhCC--
Confidence 4456788888887633 3 7889999999999999999999999998776 47999999999999999998651
Q ss_pred eeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC--CCCC-ceee
Q psy1689 147 SLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ--QNLG-TIKC 223 (998)
Q Consensus 147 ~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~--~~~g-~I~~ 223 (998)
.++|+||++|++++|+||+|||+|+|++|+++|+ ++.| +|++
T Consensus 214 -----------------------------------~~ar~lw~~I~~~~~etG~P~l~f~D~~N~~~p~~~~~~G~~I~a 258 (571)
T TIGR02510 214 -----------------------------------GEKMARWAELLKMRAETGIGYLFFNDIANEKAPEAFKALGIPIRA 258 (571)
T ss_pred -----------------------------------chHHHHHHHHHHHHHHhCCceEEEhHHhhhhCchhhhhcCCeEEe
Confidence 1368999999999999999999999999999986 5778 8999
Q ss_pred cCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhh-----cCCCc---HHHHHHHHh
Q psy1689 224 SNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIID-----VNFYP---VEEARNSNM 295 (998)
Q Consensus 224 sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId-----~~~~p---~~e~~~~~~ 295 (998)
||||+||+||+.++++++|||+||||++|... ...++|+++||+||+||| .+.+| ++++++.++
T Consensus 259 sNlC~Ei~l~~~~~~~~~CnLgSiNL~~~~~~--------~~~~~v~~avr~LDnViD~~i~~~~~~p~~~~~~~~~~~~ 330 (571)
T TIGR02510 259 SNLCTEIALPSDDEESFTCCLSSLNLLHWDEI--------KDADAIETLVIFLDSVCDDFIAKAEEIPYDTLEKAIRFAE 330 (571)
T ss_pred cCCCcceeccCCCCceeeeecchhhHHHHhhc--------ccccHHHHHHHHHHHHHHHhhhhcccCCchhHHHHHHHHH
Confidence 99999999999988999999999999998532 125899999999999999 45565 588888899
Q ss_pred hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCC
Q psy1689 296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 375 (998)
Q Consensus 296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~ 375 (998)
++|+||||||||||+|+++|++|+|+||++++++||++|+++|+++|++||+|+|+++
T Consensus 331 ~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~---------------------- 388 (571)
T TIGR02510 331 KARAIGLGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDE---------------------- 388 (571)
T ss_pred hcCCcccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcch----------------------
Confidence 9999999999999999999999999999999999999999999999999999999953
Q ss_pred CHhhHHHHHHHHHhcCCCcccccccCCccchhhhcC-CcccccccccceEEEEccccceEEeChhHHHHHHHcCCC---c
Q psy1689 376 DLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG-NNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW---D 451 (998)
Q Consensus 376 ~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G-~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~---~ 451 (998)
++++++++|+|||++||||||||||+|+| +|+||||+|+++|.|++.+|+|+++|++|.+.|+++|+| .
T Consensus 389 -------l~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~fa~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~ 461 (571)
T TIGR02510 389 -------LAEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLTCNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIE 461 (571)
T ss_pred -------hHHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcchhhhhhhhccCCceEEECHHHHHHHHhcCCccccH
Confidence 24556789999999999999999999996 999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHc
Q psy1689 452 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKL 529 (998)
Q Consensus 452 ~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~ 529 (998)
+++++.+..++|+||+++.+|++++.+|+||+||+|++||+|||++|||||||||+|+|+++ .+.+++..+|++||++
T Consensus 462 ~~~~~~i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~ 541 (571)
T TIGR02510 462 EKMEDIALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAARQKHIDQAQSINLFFHADEAEPRDANAHRAFADDP 541 (571)
T ss_pred HHHHHHHHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHHccccccccCCccccCCCCCCHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999999999999999999999999999974 4789999999999999
Q ss_pred CCceEEEEeecccccccc
Q psy1689 530 GLKTGMYYLRTKPAANAI 547 (998)
Q Consensus 530 GlKt~~yY~R~~~~~~~~ 547 (998)
|||| +||||+++.+++.
T Consensus 542 GlK~-~YY~rs~~~~~~~ 558 (571)
T TIGR02510 542 GLKA-LYYLFSERGAKAS 558 (571)
T ss_pred CCCe-EEeecchHHHHhh
Confidence 9999 9999998877664
No 28
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.9e-92 Score=892.38 Aligned_cols=314 Identities=25% Similarity=0.390 Sum_probs=292.5
Q ss_pred cceeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcC
Q psy1689 239 VAVCNLASIALNMYINPA---DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMR 315 (998)
Q Consensus 239 ~~~CNL~SINL~~~v~~~---~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lg 315 (998)
+++||||||||++|+..+ +..|||++|+++|+++||+||+|||.+.||+|++++.+++.|+||||+|||||+|++||
T Consensus 1305 y~sCNLgSINL~~fV~~~~~g~~~fD~e~l~~~V~~avR~LDnVID~~~yPlp~i~~~~~~~R~IGLGvmGLad~L~~lG 1384 (1740)
T PRK08332 1305 YESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNTKLTRRIGVGMMGLADALFKLG 1384 (1740)
T ss_pred CCeeecHHHHHHHHhcccccCccccCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHhhhcCCcccchhHHHHHHHHcC
Confidence 458999999999999742 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcc
Q psy1689 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS 395 (998)
Q Consensus 316 l~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs 395 (998)
++|+|+||++++++||+.|+++|+++|++||+|+||||.|++|+|++|.++++.|........+|++|+++|++||+|||
T Consensus 1385 I~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~~~~~~~~~~~~W~~L~e~I~k~GlRNs 1464 (1740)
T PRK08332 1385 IPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVEGFYHPEIWNLPWDKLVEEIKKYGVRNA 1464 (1740)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhcccccccccccchhccccHHHHHHHHHHhCcchh
Confidence 99999999999999999999999999999999999999999999999999887664322223479999999999999999
Q ss_pred cccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhh
Q psy1689 396 LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKL 475 (998)
Q Consensus 396 ~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~ 475 (998)
++||||||||||+++|+|+||||+|+++|.|++..|++.++|+++.+.|+++|+|+++++.+|....|++|+++.+|+++
T Consensus 1465 ~ltaIAPTGSiSliag~SsGIEPifA~~y~R~v~~G~~~~~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~ 1544 (1740)
T PRK08332 1465 MVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDM 1544 (1740)
T ss_pred eeeccCCCcchhhhcCCCCccccchhheeEEeccCceEEEecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred hhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhh
Q psy1689 476 KDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552 (998)
Q Consensus 476 k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~ 552 (998)
+.+|+||+||+|.+||+|||++|+|||||||+|||+|+ .|.+||.++|++||++||||+|||+..++..++.....+
T Consensus 1545 ~~~F~TA~DI~~~~hI~mqAa~Qk~VDqaISKTiNlP~dat~eDv~~iY~~Awk~GlKGiTvYRdgs~~~qVl~~~~~ 1622 (1740)
T PRK08332 1545 QRVFVTALDIHWLDHILAQANIQMWLTDSASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSLSVQVYSVEGE 1622 (1740)
T ss_pred hhhcccHhcCCHHHHHHHHHHHhhhccccccceeecCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCccceeeecCcc
Confidence 99999999999999999999999999999999999995 699999999999999999999999666665555554433
No 29
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=6.6e-89 Score=791.71 Aligned_cols=351 Identities=57% Similarity=0.897 Sum_probs=335.0
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|+
T Consensus 103 sG~v~~~~~~~~~~~~i~qgg~RrgA~~~~l~~~HpDi~~Fi~~K~~~~~~~~r~~~~n~~v~i~D~Fm~~v~------- 175 (460)
T cd01679 103 NGVIPFLKLLNDTARYVDQGGQRKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVE------- 175 (460)
T ss_pred CChhhHHHHHHHHHHHHHcCCccccceEEEEeCCCCcHHHHHHHhhccCchhhHhhcCceeeeeCHHHHHHHH-------
Confidence 45678888888886 4456789999999999999999999999999999999999999999999999999997
Q ss_pred eCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCcc
Q psy1689 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCT 228 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~ 228 (998)
|+||++|++++|+||+||++|+|++|+++|+++.|+|++||||+
T Consensus 176 ------------------------------------r~l~~~I~~~~~~tG~P~i~f~D~~N~~~~~~~~~~I~~sNpC~ 219 (460)
T cd01679 176 ------------------------------------RDLWRKILESQFETGYPYILFKDTCNRKNPQKHLGTIKSSNLCT 219 (460)
T ss_pred ------------------------------------HHHHHHHHHHHHHhCCcHHHhhHHHHhcCCcccCCeEEeecccc
Confidence 89999999999999999999999999999999999999999999
Q ss_pred ceecccC-----CCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 229 EIVEYTS-----KDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 229 EI~l~~~-----~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
||+|++. .+++++|||+||||++|++ ++.|+++|++++|+||+|||.+.||+|++++.+++.|+||||
T Consensus 220 Ei~l~~~~~~~~~~~~~~CnL~sinL~~~v~-------~~~l~~~v~~avr~lD~vid~~~~p~~~~~~~~~~~R~iGlG 292 (460)
T cd01679 220 EILQPTSPSEDEPGEDAVCNLASINLGNFVT-------FEKLEEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLG 292 (460)
T ss_pred ccccCCccccccCCCcceeecHHhHHHHHhC-------hHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCccccc
Confidence 9999987 6788999999999999974 689999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHH
Q psy1689 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAAL 383 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~L 383 (998)
+|||||+|+++|++|+|+||++++++||+.|+++|+++|++||+|+|
T Consensus 293 v~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G--------------------------------- 339 (460)
T cd01679 293 VMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG--------------------------------- 339 (460)
T ss_pred chHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------------------------
Confidence 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCC
Q psy1689 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNG 463 (998)
Q Consensus 384 r~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G 463 (998)
|+|||++||||||||||+++|+|+||||+|+++|.|++.+|+|.++|+++.+.|+++|
T Consensus 340 -------G~RNs~l~aiaPTgs~S~l~g~S~gieP~~a~~~~R~~~~g~~~~~n~~l~~~~~~~g--------------- 397 (460)
T cd01679 340 -------GLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPVVNPHLEKDLWEYG--------------- 397 (460)
T ss_pred -------CccccceeeeCCccHHHHhcCCCCCcCccccceeEEEccCCcEEEECHHHHHHHHHcC---------------
Confidence 7999999999999999999999999999999999999999999999999998886654
Q ss_pred cccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEeec
Q psy1689 464 SIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT 540 (998)
Q Consensus 464 sv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~ 540 (998)
+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+ ||||+
T Consensus 398 --------------~f~ta~di~~~~~i~~~a~~Q~~vDqsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~-YY~r~ 460 (460)
T cd01679 398 --------------LYKTAYEIDQRWLIDLAADRQKHIDQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460 (460)
T ss_pred --------------ccccHHhCCHHHHHHHHHHHccCcccccCceeecCCCCCHHHHHHHHHHHHHcCCCeE-EEeCC
Confidence 699999999999999999999999999999999996 589999999999999999996 99996
No 30
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.1e-87 Score=806.93 Aligned_cols=442 Identities=37% Similarity=0.619 Sum_probs=406.0
Q ss_pred hhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceeee
Q psy1689 71 WGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149 (998)
Q Consensus 71 ~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~Lf 149 (998)
+...|.++++... ...++|+|+||+|+||++|||||++||++|+++|++..|.++++++|+|||.||++++++++|+||
T Consensus 194 G~i~~~k~~d~~~~~i~QgG~R~GA~~v~L~~~HpDi~~fl~~k~~~gde~~r~~~~~~~~~i~d~~~~~~~~~~~~~l~ 273 (651)
T COG0209 194 GVVPFMKLLDDAFDAINQGGVRRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLF 273 (651)
T ss_pred CchhHHHHHHHHHHHHhhcCcCCCCeEEeecCCCccHHHHHHHHhhccccceeeeccccceeecHHHHHHHhcCCceEee
Confidence 3457888888885 556789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhchhHHHHHHHHHHc-CcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCC-CCCceeecCCc
Q psy1689 150 CPNTCRGLSDSWGEKFDDLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQ-NLGTIKCSNLC 227 (998)
Q Consensus 150 ~P~~~~~L~~~yg~~F~~~Y~~~e~~-g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~-~~g~I~~sNpC 227 (998)
+|++.-++.+.||++|+. |.+++.+ +..+++|+|++||++|+..+|++|+||++|+|++|++++.. +.|+|++||||
T Consensus 274 ~P~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~v~Ar~l~~~i~~~~~esG~P~l~f~D~~N~~~~~~~~~g~I~~sNlC 352 (651)
T COG0209 274 SPRDGYEAPDVYGAEFEE-YAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGGGAIRASNLC 352 (651)
T ss_pred CCcccccccccchhhHHH-HHHHhcCCCeeeeeEcHHHHHHHHHHHHHhcCCCeeEecccccCCCCCcccCceeeccccc
Confidence 999877899999999999 9998865 55789999999999999999999999999999999666554 56699999999
Q ss_pred cceeccc-------CCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCC
Q psy1689 228 TEIVEYT-------SKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPI 300 (998)
Q Consensus 228 ~EI~l~~-------~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~I 300 (998)
+||.|++ .++++++|||+||||.+++.. + +.|+++++++||+||+|||++.||+|++++.+..+|+|
T Consensus 353 ~Ei~~~~~~~~~~~~~~~~~~CNL~siNl~~~~~~-----~-~~~~~~v~~~vr~Ld~vid~~~~p~~~~~~~n~~~R~i 426 (651)
T COG0209 353 SEILQRTKPLSLEQPLGEDASCNLGSINLAKFVKY-----G-DGLAELVAVAVRALDNVIDLNPYPVPEAERANAESRAI 426 (651)
T ss_pred hhhhccccccccccCCCCceeeechhhhHHHHHhc-----c-hhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhhcCcc
Confidence 9998777 567889999999999999863 2 34999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhH
Q psy1689 301 GIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380 (998)
Q Consensus 301 GLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W 380 (998)
|||+|||||+|+++|++|+|+||.++++++|+.|+++|+++|++||+|+|+|+.|++|+|++|.++.+.+... ....+|
T Consensus 427 GlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~~-~~~~~w 505 (651)
T COG0209 427 GLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRLF-GITEDW 505 (651)
T ss_pred ccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccccchhhhc-cccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999866643222 112899
Q ss_pred HHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhh
Q psy1689 381 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIV 460 (998)
Q Consensus 381 ~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~ 460 (998)
+.|++++++||+|||+++|||||||||+|+|+|+||||+|+++|.|....|.+.++++++.+.+...+
T Consensus 506 ~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~~~~~r~~~~g~~~~~~~~l~~~~~~~~------------ 573 (651)
T COG0209 506 EKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFEDLLAYY------------ 573 (651)
T ss_pred HHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChhheeeEecccceEEEeCcHHHHHHHHhh------------
Confidence 99999999999999999999999999999999999999999999999889999999999988775543
Q ss_pred cCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceEEEEee
Q psy1689 461 NNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLR 539 (998)
Q Consensus 461 ~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R 539 (998)
..|++|++.+||+|+|++|+|||||||+|||++. .+.+|+..+|++||++|||| +||+|
T Consensus 574 -------------------~~a~~i~~~~~i~~~a~~q~~iDq~iS~tl~~~~~~~~~d~~~~~~~Aw~~g~K~-~yY~~ 633 (651)
T COG0209 574 -------------------GLAYEIDPLWHIDMQAAAQRWIDQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRR 633 (651)
T ss_pred -------------------hhhhccChHHHHHHHHHhhcccccceeeeecCCCCCCHHHHHHHHHHHHHcCCce-EEEec
Confidence 2399999999999999999999999999999994 68899999999999999999 99999
Q ss_pred ccccccccchhhh
Q psy1689 540 TKPAANAIQFTID 552 (998)
Q Consensus 540 ~~~~~~~~~~~~~ 552 (998)
+++..+..++.++
T Consensus 634 ~~~~~~~~~~~~~ 646 (651)
T COG0209 634 TSQAAQVLTVVLD 646 (651)
T ss_pred Ccccccccccccc
Confidence 9999988877665
No 31
>KOG1112|consensus
Probab=100.00 E-value=8.6e-75 Score=637.65 Aligned_cols=300 Identities=72% Similarity=1.151 Sum_probs=275.5
Q ss_pred hhccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccC
Q psy1689 583 ICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG 662 (998)
Q Consensus 583 ~c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~ 662 (998)
.-.+++|.|||||+||||+|+.|++||+|+||+.|+.+|||+|||+|++||||||+..|||+.|+||+.|+|+||||||+
T Consensus 493 ~SNmrhRPigiGVQGlAD~f~llr~pfeS~eA~~LN~qIFEtiYy~aleAScelA~~eGpyetyeGSPvSkGilq~dmw~ 572 (796)
T KOG1112|consen 493 RSNMRHRPIGIGVQGLADAFILLRLPFESAEARLLNKQIFETIYYAALEASCELAQKEGPYETYEGSPVSKGILQFDMWN 572 (796)
T ss_pred hcccccCCccccchhHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcccCCCcccccccchhhcC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhH
Q psy1689 663 VTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHY 742 (998)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 742 (998)
++|
T Consensus 573 ~~p----------------------------------------------------------------------------- 575 (796)
T KOG1112|consen 573 VKP----------------------------------------------------------------------------- 575 (796)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 653
Q ss_pred HHHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccc
Q psy1689 743 EIIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 822 (998)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP 822 (998)
++.|||+.||++|.+||+|||.++|+|||+|+|+|+|++++|||
T Consensus 576 ------------------------------------t~~wDW~~Lre~I~khGvRNSLl~ApMPTAsTsQIlGnNE~fEP 619 (796)
T KOG1112|consen 576 ------------------------------------TDLWDWATLREKIAKHGVRNSLLVAPMPTASTSQILGNNECFEP 619 (796)
T ss_pred ------------------------------------CcccCHHHHHHHHHHhccccceeeccCCCcchhhhhcCccccCc
Confidence 25689999999999999999999999999999999999999999
Q ss_pred cccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902 (998)
Q Consensus 823 ~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q 902 (998)
+.+|+|+|++++|+|++|||||+++|.++|+|++++++.++..+||+|+|+.+|+++|++|||+|||+|+.+|+|+|+|+
T Consensus 620 ~tsNiYsRRvlsGeFqiVN~hll~DLv~~glW~~~mKn~lI~~nGSIq~i~~iP~~lk~lYkTvWEIsqktvi~mAAdRg 699 (796)
T KOG1112|consen 620 YTSNIYSRRVLSGEFQIVNPHLLKDLVELGLWDDEMKNKLIANNGSIQNIPEIPQDLKELYKTVWEISQKTVIDMAADRG 699 (796)
T ss_pred ccccceeeeecccceEEEcHHHHHHHHHhccCCHHHHHHHHhcCCccccCccCCHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHH
Q psy1689 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQA 982 (998)
Q Consensus 903 ~~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 982 (998)
.|||||||+||++.+++..++.++|||.||+|||++|||+|+++++.+|+||||+..+. .++....... ....+....
T Consensus 700 ~~iDQSqSlNi~~~~P~y~klTSmHFYgwkkGLKTGMYYLRt~~a~~aIqFTvdk~~~~-~~~~~~~~~~-~~~e~~~~~ 777 (796)
T KOG1112|consen 700 AFIDQSQSLNIHLAKPNYGKLTSMHFYGWKKGLKTGMYYLRTRPAANAIQFTVDKKVLN-EKAEVAEGDS-KEEEEDEYN 777 (796)
T ss_pred cccccccceeeeecCCCccccceeEeeehhcccccceeEEeccccccceEEEecHHHhc-ccccccccch-hhhHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999965432 2221111111 112233456
Q ss_pred hhcccccCCCccccc
Q psy1689 983 MAAMICRRDNKEDCL 997 (998)
Q Consensus 983 ~~~~~~~~~~~~~~~ 997 (998)
++.|.|+++|+|.|+
T Consensus 778 ~~~~~c~~~n~e~C~ 792 (796)
T KOG1112|consen 778 TAVMVCSLDNPEACL 792 (796)
T ss_pred hhhhhhccCCchHhh
Confidence 788999999999996
No 32
>PLN02437 ribonucleoside--diphosphate reductase large subunit
Probab=100.00 E-value=8.1e-70 Score=663.20 Aligned_cols=296 Identities=63% Similarity=1.045 Sum_probs=266.7
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||||||||+|++||+||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|++.+
T Consensus 515 ~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~fp~f~~S~~~~G~~~~~~~~~~~ 594 (813)
T PLN02437 515 MRHRPIGIGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGVTP 594 (813)
T ss_pred hcCCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcchhhhccchhccCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998875321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 595 -------------------------------------------------------------------------------- 594 (813)
T PLN02437 595 -------------------------------------------------------------------------------- 594 (813)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 595 ---------------------------------~~~~dW~~Lr~~i~~~GlRNs~l~AiaPT~StS~i~g~s~giEP~~s 641 (813)
T PLN02437 595 ---------------------------------SGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTS 641 (813)
T ss_pred ---------------------------------chhhhHHHHHHHHHHhCcchhceeccCCcHHHHHHcCCCCccccccc
Confidence 12468999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
|+|+|++.+|+|+++|++|+++|+++|+|+++++++|+.++||||+++.||++++++|+|||||+|++||+|||++||||
T Consensus 642 n~y~R~~~~Ge~~~vn~~l~~~l~~~g~~~~~~~~~i~~~~gsvq~~~~lp~~~~~~f~tA~ei~~~~~I~~aA~rQ~~I 721 (813)
T PLN02437 642 NIYSRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVDMAADRGCYI 721 (813)
T ss_pred hheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhhCCCccCCCCCCHHHHHHhhhHHhCCHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689 906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985 (998)
Q Consensus 906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (998)
|||||+|||||+.+.++|.++|++|||+||||+|||+|+++++++++|||++..+........... ..+ +.+..++
T Consensus 722 DQsqS~nl~l~~~t~~~i~~~~~~Awk~GLKt~~YY~R~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~--~~~~~~~ 797 (813)
T PLN02437 722 DQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTASLKPSATGVAAPE--EED--VETKMAQ 797 (813)
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCeeEEEEeccccccceEEecchhhhccccccccCcc--ccc--cchhhhh
Confidence 999999999998899999999999999999999999999999999999999654332110000000 100 1123456
Q ss_pred ccccCCCcccccC
Q psy1689 986 MICRRDNKEDCLK 998 (998)
Q Consensus 986 ~~~~~~~~~~~~~ 998 (998)
..|+++|++.|++
T Consensus 798 ~~~~~~~~~~c~~ 810 (813)
T PLN02437 798 MVCSLDNREECLA 810 (813)
T ss_pred ccCCCCCcccccc
Confidence 8999999998874
No 33
>PRK07207 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6e-68 Score=656.04 Aligned_cols=309 Identities=35% Similarity=0.569 Sum_probs=265.0
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|+||+|+|+.++
T Consensus 655 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~y~A~~aS~eLA~E~G~~~~f~gS~~~~g~~~~d~~~~~~ 734 (965)
T PRK07207 655 LRHRPVGLGIMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLA 734 (965)
T ss_pred hccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhcCccchhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.. | + .|.
T Consensus 735 ~~-------------------------r---~-~~~-------------------------------------------- 741 (965)
T PRK07207 735 EA-------------------------R---G-GYL-------------------------------------------- 741 (965)
T ss_pred hh-------------------------h---c-ccc--------------------------------------------
Confidence 10 0 0 000
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
.+.....++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus 742 -----------------------------~~~~~~~~dW~~Lr~~i~~~G~RNs~l~AiAPT~S~S~i~g~s~giEP~~s 792 (965)
T PRK07207 742 -----------------------------EVDRSSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQ 792 (965)
T ss_pred -----------------------------cccccchhhHHHHHHHHHHhCccccceeccCChHHHHHHhCCCCccCcCch
Confidence 000124679999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
|+|+|++.+|+|.++||+|.++|+++|+|+++++++|...+||||+++.||+++|++|+|||||+|+|||+|||++||||
T Consensus 793 ~~y~r~~~~g~f~~vn~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~f~tA~ei~~~~~I~~~A~rQ~~I 872 (965)
T PRK07207 793 NLYVKSNLSGEFTVVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQKWI 872 (965)
T ss_pred hhheeeccCCceEEeCHHHHHHHHHcCCChHHHHHHHHhcCCCccCCCCCChhHHhhcccCccCCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689 906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985 (998)
Q Consensus 906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (998)
|||||+|||||+++.++|.++|++||++|||| +||+|+++++++++||+++.++....................+....
T Consensus 873 DqsqS~nl~~~~~t~~~l~~~y~~Aw~~GlKt-~YY~Rs~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (965)
T PRK07207 873 DQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTGALNAVSSGGGGAGGAAAAAAAPPAADP 951 (965)
T ss_pred hhhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEEecccccchhhhccccccccccCCCccccccccccccCCCCCCC
Confidence 99999999999999999999999999999999 79999999999999999965432211110000000000000012235
Q ss_pred ccccCCCcccccC
Q psy1689 986 MICRRDNKEDCLK 998 (998)
Q Consensus 986 ~~~~~~~~~~~~~ 998 (998)
..|++++|+ |++
T Consensus 952 ~~~~~~~~~-~~~ 963 (965)
T PRK07207 952 KACSIDDPD-CEA 963 (965)
T ss_pred CcccCCCCC-Ccc
Confidence 789998876 864
No 34
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=2.6e-65 Score=611.06 Aligned_cols=372 Identities=15% Similarity=0.076 Sum_probs=312.0
Q ss_pred hhhhhhHHHHHHHHhh-------------------------hccccccccceEEEecCCcccHHHHHHhhhcCCcccccc
Q psy1689 69 DSWGEKFDDLYKKYEA-------------------------EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRA 123 (998)
Q Consensus 69 ~s~g~~F~~lY~~~E~-------------------------~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~ 123 (998)
.+....|.++|+.+.. ...+|.||||.|. ++||||++||++|+..+...
T Consensus 214 asGp~~~~~~~~~~~~iL~~~~G~~L~~id~~di~n~~~~~v~~Gg~RR~A~M~---~~HpDi~eFi~aK~~~~~~~--- 287 (658)
T cd01676 214 ASGPEPLKKLHKAIAAILNDRSGKPLTSVDIVDLMNLIGVCVVSGNVRRSAEIA---FGQPEDEDFADLKQYQWNPG--- 287 (658)
T ss_pred CCCcHHHHHHHHHHHHHHhhhcccccchhHHHHHHhhhhcEEeecCcccceecC---CCCccHHHHHHhcccCCccc---
Confidence 3556899999988532 2356889998886 89999999999997654321
Q ss_pred cccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCcee
Q psy1689 124 RDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYM 203 (998)
Q Consensus 124 ~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl 203 (998)
+ ..|-+..+ ++...+++++|++|.+|++++|+||+|||
T Consensus 288 -n------------------~~~~~~~n-----------------------~s~~~~~~~ar~~~~~I~~~~~~tGEPGi 325 (658)
T cd01676 288 -R------------------REHGWASN-----------------------NSVVFESKPDRLEYSFACMLIRGNGEPGI 325 (658)
T ss_pred -c------------------chhheecc-----------------------cchheeehhhHHHHHHHHHHHHHhCCCcE
Confidence 1 11222111 23345688999999999999999999999
Q ss_pred EehhhhhhhCCCC------CCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHH
Q psy1689 204 LYKDACNRKSNQQ------NLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLN 277 (998)
Q Consensus 204 ~f~D~~Nr~~~~~------~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD 277 (998)
+|+|++|++++.. +.|+|.+||||+||+|++ +++|||+||||.+|+. |+++|+++++++|||||
T Consensus 326 ~f~D~~N~~~~~~~~~~~~~~g~I~~TNPCgEi~L~~----~~~CNLgSINL~~~v~------d~~~l~~~v~~avRflD 395 (658)
T cd01676 326 AWLDNMKAYARMVLLTTPYHDLRAKGGNPCGEISLES----YELCNLVEVFPLKHEG------DLEDLQETLYLAGRYAK 395 (658)
T ss_pred EEHHHHHhhCccccccccccCCeeEeccccccccCCC----CCceechhccHHhhcc------cHHHHHHHHHHHHHHHH
Confidence 9999999998752 457899999999999874 3689999999999974 78999999999999999
Q ss_pred HhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q psy1689 278 KIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 357 (998)
Q Consensus 278 ~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~ 357 (998)
+|++ +.||+|++++.+++.|+||||+|||||+|+++|++|++.++. ++++.++..+..+|.++|+++|.
T Consensus 396 ~Vi~-~~~p~~~~~~~~~~~R~IGlGvmGlaD~L~~lgi~~~~~~~~----~~~~~~~~~~~~~s~ela~e~G~------ 464 (658)
T cd01676 396 TVTL-LPLHWEITNEIILRNRRIGVSMSGIADFIVRAGGDLTLHDLK----RWRNIGYEAVYQYDERLSKWLGI------ 464 (658)
T ss_pred Hhhc-ccCchHHHHHHHHhcccceeeeecHHHHHHHcCCCccHHHHH----HHHHHHHHHHHHHHHHHHHHhCC------
Confidence 9998 569999999999999999999999999999999999988876 45555566677778889998884
Q ss_pred CcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeC
Q psy1689 358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 437 (998)
Q Consensus 358 S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn 437 (998)
.||+++||||||||+|+|+|+|+||||+||++|+|++..+ .|
T Consensus 465 ----------------------------------~rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~ 506 (658)
T cd01676 465 ----------------------------------PLSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KH 506 (658)
T ss_pred ----------------------------------ccccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cC
Confidence 2688999999999999999999999999999999998865 49
Q ss_pred hhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCC-ccccccceeEeecCC-C
Q psy1689 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEI-N 515 (998)
Q Consensus 438 ~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~VDqs~S~tl~l~~~-t 515 (998)
+++++.|++.|++.++... .. .++++.+|++.+.+|+||+||++.+||+|||++|+ ||||+||+|||+|+. +
T Consensus 507 ~pl~~~l~~~G~~~~~~~~----~~--~~~l~~iP~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~ 580 (658)
T cd01676 507 DPLAPALIAAGYHVEPDIY----DP--TSVLVEFPVKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPE 580 (658)
T ss_pred cHHHHHHHHcCCCcHHHHh----cc--CCCcccCCHHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCC
Confidence 9999999999999776422 23 35688999999999999999999999999999999 699999999999864 9
Q ss_pred HHHHHHHHHHHHHcCCceEEEEeecccc---ccccchhhhHh
Q psy1689 516 YAKMSSMHFHGWKLGLKTGMYYLRTKPA---ANAIQFTIDKT 554 (998)
Q Consensus 516 ~~~i~~~~~~Awk~GlKt~~yY~R~~~~---~~~~~~~~~~~ 554 (998)
.++|.++|.++|. ||||+|+|.|..+. ++++...++++
T Consensus 581 ~~dV~~~l~~~~~-~~KG~t~l~~~d~~~~~~q~P~E~I~ke 621 (658)
T cd01676 581 GPALIQALQQFQY-QYKSVSLLPRFDTTKNAAQMPFEPITKE 621 (658)
T ss_pred HHHHHHHHHHhhc-CCeEEEEeecCCcccCcccCCccccCHH
Confidence 9999999999955 99999999755443 25666667754
No 35
>PRK12365 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=6.5e-66 Score=644.02 Aligned_cols=274 Identities=33% Similarity=0.549 Sum_probs=252.0
Q ss_pred hccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCC
Q psy1689 584 CRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 663 (998)
Q Consensus 584 c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~ 663 (998)
.....|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|+.
T Consensus 735 ~n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~y~~f~~S~~~~g~l~~d~~~~ 814 (1046)
T PRK12365 735 ANLAHRAIGLGVMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIEL 814 (1046)
T ss_pred HHHhcCCcccchhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhhhhcchhhhhh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred CCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHH
Q psy1689 664 TPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYE 743 (998)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 743 (998)
... .| +.. +
T Consensus 815 ~~~-------------------------~~---~~~-------------------------------~------------ 823 (1046)
T PRK12365 815 LKE-------------------------YR---GEA-------------------------------N------------ 823 (1046)
T ss_pred hhh-------------------------hh---ccc-------------------------------c------------
Confidence 210 00 000 0
Q ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccc
Q psy1689 744 IIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823 (998)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~ 823 (998)
..++....++|++||++|++||+|||+++|||||||||+|+|+|+||||+
T Consensus 824 ------------------------------~~~~~~~~~~W~~Lr~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~ 873 (1046)
T PRK12365 824 ------------------------------LLMDTSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPT 873 (1046)
T ss_pred ------------------------------ccccccchhhHHHHHHHHHHhCcchhcceeeCCCchHHHHhCCCCCcccc
Confidence 00011245799999999999999999999999999999999999999999
Q ss_pred ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903 (998)
Q Consensus 824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~ 903 (998)
|+|+|+|++.+|+|.++|++|.++|+++|+|++++++.|..++||||+++.+|+++|++|+|||||+|+|||+|||++||
T Consensus 874 ~s~~y~r~~~~G~~~~~n~~l~~~l~~~~~~~~~~~~~i~~~~Gsvq~i~~ip~~~k~~y~tA~ei~~~~~I~~~A~rQk 953 (1046)
T PRK12365 874 YKHLFVKSNLSGEFTIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQK 953 (1046)
T ss_pred hhhhheeeccCCeEEEecHHHHHHHHHcCCChHHHHHHHHHhcCCcccccCCchHHHhhcCcHHhCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhh
Q psy1689 904 FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 959 (998)
Q Consensus 904 ~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~ 959 (998)
|||||||+||||++.+.++|.++|++||++|||| |||+|+++++++++||++..+
T Consensus 954 ~IDqs~S~nl~~~~~~~~~l~~~y~~Aw~~GlKt-~YY~Rt~~a~~~~~~t~~~~~ 1008 (1046)
T PRK12365 954 WIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDINK 1008 (1046)
T ss_pred ccchhhcCCcCCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccchhhhhcccCCc
Confidence 9999999999999889999999999999999999 899999999999999999665
No 36
>PRK06539 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.4e-65 Score=623.70 Aligned_cols=307 Identities=32% Similarity=0.573 Sum_probs=262.0
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|....
T Consensus 507 ~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~fp~f~~S~~~~G~l~~d~~~~~~ 586 (822)
T PRK06539 507 QQNRAIGLGVMGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLE 586 (822)
T ss_pred HhcccccccchhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhhcchhhhhhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998875321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.. .+.|.
T Consensus 587 ~~----------------------------~~~~~--------------------------------------------- 593 (822)
T PRK06539 587 AD----------------------------RGVPV--------------------------------------------- 593 (822)
T ss_pred hh----------------------------ccccc---------------------------------------------
Confidence 00 00000
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
.+.+...++|+.|++++ ++|+|||+++|||||||||+|+|+|+||||+|+
T Consensus 594 -----------------------------~~~~~~~~dW~~L~~~i-~~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s 643 (822)
T PRK06539 594 -----------------------------DVNRTTRLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFS 643 (822)
T ss_pred -----------------------------cccccchhcHHHHHHHH-HhCeeccceeecCCchhHHHhcCCCCCcCcchh
Confidence 00112367999999998 569999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|+|++.+|+|.++|++|+++|+++|+| ++++++|+..+||+|+++.+|++++++|+|||||+|++||+|||++||||
T Consensus 644 ~~y~R~~~~G~f~~vn~~l~~~L~~~g~~-~~~~~~i~~~~Gsvq~i~~iP~~~~~~f~tA~eI~~~~~I~maA~rQ~~I 722 (822)
T PRK06539 644 QIFSRSTSSGKFLEVNRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQKWV 722 (822)
T ss_pred hhheeecccceEEEeCHHHHHHHHHcCCC-HHHHHHHHHhCCCccCcccCChHHHhhcCcHhhCCHHHHHHHHHHHCccc
Confidence 99999999999999999999999999999 57888999999999999999999999999999999999999999999999
Q ss_pred cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccc----hhhhhhhHHH
Q psy1689 906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRS----QEEIQADQEQ 981 (998)
Q Consensus 906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 981 (998)
|||||+||||++.+.+||.++|++||++|||| |||+|+++++++++||+++.+.......+.... .....+-+..
T Consensus 723 DqsiS~nl~l~~~t~~~v~~iy~~Aw~~GlKT-~YYlrt~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (822)
T PRK06539 723 DQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKSAERRGGPRRGFAGFGAGVPPAVSAD 801 (822)
T ss_pred hhhcCCeeecCCCCHHHHHHHHHHHHHcCCCe-EEeeccchhhhhhhhccccchhcccCCCCCCcccccCCCCCceeecc
Confidence 99999999999889999999999999999999 899999999999999999765443222211110 0011111222
Q ss_pred HhhcccccCCCcc--ccc
Q psy1689 982 AMAAMICRRDNKE--DCL 997 (998)
Q Consensus 982 ~~~~~~~~~~~~~--~~~ 997 (998)
...+..|+.+.++ +|.
T Consensus 802 ~~~~~~~~~~~~~~~~~~ 819 (822)
T PRK06539 802 LIPGASCPVDAQAPQQCE 819 (822)
T ss_pred cccccCCCCCCCCCCCCC
Confidence 4556778888765 454
No 37
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=2.5e-58 Score=564.35 Aligned_cols=283 Identities=19% Similarity=0.309 Sum_probs=229.2
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
.+.|.||||+|||||+|++|||||||+||++|+++||++|+++|+++|+|||+|+|+||.|++|+|..
T Consensus 540 ~~~R~IGLGvmGLadlL~~lGipYdS~EAr~la~~I~~~m~~~Ay~aSaELAkE~G~Fp~f~~s~~~~------------ 607 (1220)
T PRK07562 540 YEFRTLGLGYANIGGLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYEKNADHM------------ 607 (1220)
T ss_pred hcCCCeeehHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcccChhhh------------
Confidence 36789999999999999999999999999999999999999999999999999999999999998732
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
|+|+++ +++...|.. .|++. ....|+
T Consensus 608 --------lrv~r~-----------h~~aa~g~~--------------~gy~~------------~~~~p~--------- 633 (1220)
T PRK07562 608 --------LRVIRN-----------HRRAAHGES--------------EGYEG------------LSVNPV--------- 633 (1220)
T ss_pred --------hhhhhh-----------hhhhhcccc--------------ccccc------------cccCcc---------
Confidence 223332 111111100 00000 000000
Q ss_pred HHhhhhhhhhhhhcccccccccccccc---ccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCC-Ccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYD---MWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFE 821 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~-s~giE 821 (998)
++... ...+.....++|++|++.+++||+|||++++||||||||+|+|| |+|||
T Consensus 634 ----------------------~~~~~~~~~~~l~~~a~~~W~~l~~~i~k~G~RNA~ltaIAPTGTISlI~d~dTtGIE 691 (1220)
T PRK07562 634 ----------------------PLDHANCPDQDLVAHAKAAWDKALELGEKHGYRNAQVTVIAPTGTIGLVMDCDTTGIE 691 (1220)
T ss_pred ----------------------cccccccchhhhccchhhhHHHHHHHHHHhCcccccccccCCcHHHHHhcCCCCCCcc
Confidence 00000 00000013578999999999999999999999999999999999 99999
Q ss_pred ccccceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHH--hcCCccccCCCCC----------------------
Q psy1689 822 PYTSNIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLI--VNNGSIQDIEGIP---------------------- 876 (998)
Q Consensus 822 P~~a~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~--~~~Gsv~~i~~l~---------------------- 876 (998)
|+|+++|.|++.. |.|.++|+++.+.|+++|++++++++.+. ..+||+++++++|
T Consensus 692 P~fAlv~~kkl~gGg~f~ivN~~l~~~L~~lG~~~~~i~~i~~~~~~~Gsl~~~~~i~~~~l~~~Gf~~~~~~~~~~~l~ 771 (1220)
T PRK07562 692 PDFALVKFKKLAGGGYFKIINRAVPEALRTLGYSESQIAEIEAYAVGHGTLNQAPGINHSTLKAKGFTDEKIEKVEAALK 771 (1220)
T ss_pred cCccceEEEEeccceeEEEEcHHHHHHHHHcCCCHHHHHHHHHHhhcCCCccCCCCCCHHHHhhcCCcHHHHHHHHHHhh
Confidence 9999999998875 58999999999999999999988865543 3578887776654
Q ss_pred --------------------------------------------------------------------hhhHhhhcccC-
Q psy1689 877 --------------------------------------------------------------------QKLKDLYKTVW- 887 (998)
Q Consensus 877 --------------------------------------------------------------------~~~k~~f~tA~- 887 (998)
+++..+|.||+
T Consensus 772 ~~fdi~~~fn~~~lg~~f~~~~lg~~~~~~~~~~f~ll~~~g~t~~~i~aan~~v~g~~~~e~ap~l~~eh~~vFd~A~~ 851 (1220)
T PRK07562 772 SAFDIKFAFNKWTLGEDFCKDTLGIPAEQLNDPSFDLLEHLGFSKKDIEAANDHVCGAMTLEGAPFLKAEHLPVFDCANP 851 (1220)
T ss_pred hhhhhhhhhcccccchhhhhhcccCcHhhhccccchhhhhcccchhhHHHhhhhcccccccccCcccchhhhhhcccccc
Confidence 44556889985
Q ss_pred -------CCChHhHHHHHHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 888 -------EIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 888 -------ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
+|++++||+|||++|||||.+|||||||| ++|++|+.++|++||++|||++++||++++.+|++.....
T Consensus 852 ~g~~g~r~i~~~~Hi~M~aA~Q~fis~aISKTvNmP~~ATveDv~~~y~~a~~lG~KaitlYRdgsk~~qpL~~~~~ 928 (1220)
T PRK07562 852 CGKIGKRYLSVESHIRMMAAAQPFISGAISKTINMPNEATVEDCKNAYMLSWKLALKANALYRDGSKLSQPLNSSLI 928 (1220)
T ss_pred ccccccccCCHHHHHHHHHHhhhhccccccceeeCCCCCCHHHHHHHHHHHHHhCCcceEEEecCCccccccccccc
Confidence 99999999999999999999999999999 8999999999999999999999999999999999988644
No 38
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.7e-59 Score=593.77 Aligned_cols=258 Identities=23% Similarity=0.353 Sum_probs=242.7
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+||||.|++|+|++|.+|+|.|....
T Consensus 1364 ~~~R~IGLGvmGLad~L~~lGI~YdSeEA~~~~~~I~e~i~~~A~~aS~eLAkErG~FP~fe~S~y~~G~l~~~~~~~~~ 1443 (1740)
T PRK08332 1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYPKGELPVEGFYHPE 1443 (1740)
T ss_pred hhcCCcccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhcccccccccccch
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999876542100
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 1444 -------------------------------------------------------------------------------- 1443 (1740)
T PRK08332 1444 -------------------------------------------------------------------------------- 1443 (1740)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
....+|++|+++|+++|+|||+++|||||||||+|+|||+||||+||
T Consensus 1444 ---------------------------------~~~~~W~~L~e~I~k~GlRNs~ltaIAPTGSiSliag~SsGIEPifA 1490 (1740)
T PRK08332 1444 ---------------------------------IWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFA 1490 (1740)
T ss_pred ---------------------------------hccccHHHHHHHHHHhCcchheeeccCCCcchhhhcCCCCccccchh
Confidence 00136999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|.|++..|+|.++||+|.+.|+++|+|+++++.+|..+.|++|+++.+|++++++|+||+||+|.+||+|||++||||
T Consensus 1491 ~~y~R~v~~G~~~~~np~~~~~l~~~g~~~~e~~~~I~~~~gsvq~~~~lpe~~~~~F~TA~DI~~~~hI~mqAa~Qk~V 1570 (1740)
T PRK08332 1491 LVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDIHWLDHILAQANIQMWL 1570 (1740)
T ss_pred heeEEeccCceEEEecHHHHHHHHHcCCCcHHHHHHHHHhCCCccCcccCChhHhhhcccHhcCCHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
||||||||||| ++|++||.++|++||++||||+||||.+++..|++...-+
T Consensus 1571 DqaISKTiNlP~dat~eDv~~iY~~Awk~GlKGiTvYRdgs~~~qVl~~~~~ 1622 (1740)
T PRK08332 1571 TDSASKTINMINEATVEDVKAAYLIAHFLGCKGVTVYRDGSLSVQVYSVEGE 1622 (1740)
T ss_pred cccccceeecCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCccceeeecCcc
Confidence 99999999999 8899999999999999999999999999999999888544
No 39
>TIGR02506 NrdE_NrdA ribonucleoside-diphosphate reductase, alpha subunit. This model identifies RNR's in diverse clades of bacteria, eukaryotes as well as numerous DNA viruses and phage.
Probab=100.00 E-value=3e-59 Score=562.87 Aligned_cols=253 Identities=45% Similarity=0.768 Sum_probs=235.3
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++||+||+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++|.|...+
T Consensus 364 ~~~R~iGlG~~Glad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~f~~f~~s~~~~g~~~~~~~~~~~ 443 (617)
T TIGR02506 364 QRRRSIGIGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTI 443 (617)
T ss_pred HhcCccccchhHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccccCcchhhhhhccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999988764321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.. . .|
T Consensus 444 ~~---------------------------~----------------------------------~~-------------- 448 (617)
T TIGR02506 444 DP---------------------------K----------------------------------TS-------------- 448 (617)
T ss_pred ch---------------------------h----------------------------------cc--------------
Confidence 00 0 00
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
+.. ..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 449 ------------------------------~~~-~~~~W~~L~~~i~~~GlRNs~l~aiaPTgs~S~i~g~S~gieP~~a 497 (617)
T TIGR02506 449 ------------------------------MAP-TEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFS 497 (617)
T ss_pred ------------------------------ccc-chhhHHHHHHHHHHhCccccceeccCChHHHHHHcCCCCccCcccc
Confidence 001 3578999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|+|++.+|+|.++|++|++.|+++|+|++++++++....|++|+++++|++.+++|+||+||+|++||+|||++||||
T Consensus 498 ~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~a~~Q~~v 577 (617)
T TIGR02506 498 NIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAADRQKFV 577 (617)
T ss_pred hheeEecCCceEEEecHHHHHHHHHcCCCHHHHHHHHHhhCCCccCCCCCChhHHHHhchHhcCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCC
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK 945 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~ 945 (998)
|||||+|||+| +++.+||.++|++|||+|||| +||+|++
T Consensus 578 DqsiS~tl~~~~~~~~~dv~~~y~~Aw~~GlK~-~YY~r~~ 617 (617)
T TIGR02506 578 DQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617 (617)
T ss_pred ccccCCeeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEeecC
Confidence 99999999999 699999999999999999999 9999974
No 40
>PF02867 Ribonuc_red_lgC: Ribonucleotide reductase, barrel domain; InterPro: IPR000788 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1DQ3_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A 1XJJ_A 1XJG_A 1XJM_B 3O0N_B ....
Probab=100.00 E-value=9.6e-59 Score=552.27 Aligned_cols=254 Identities=40% Similarity=0.702 Sum_probs=213.4
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
..|+||||+|||||+|+++|++|+|+||++|+++|||.|+++|+++|++||+|+|+||.|++|+|++|.+++|.|.....
T Consensus 284 ~~R~iGlGv~Gla~~L~~~gi~y~S~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G~~~~f~~s~~~~g~~~~~~~~~~~~ 363 (538)
T PF02867_consen 284 RYRSIGLGVMGLADMLAKLGIPYDSEEARELADEIFEHIYYAAYRASVELAKERGPFPWFEKSKYARGELPFDRWDKLVD 363 (538)
T ss_dssp HH--EEEEEESHHHHHHHTT--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSTTGGGSTGGGTCCHHHHTTCSCC
T ss_pred hcCccccccccHHHHHHhCCcCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCCCchhcccchhhhhhhccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999988754321
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
+.. ++ ..+
T Consensus 364 ~~~-----------------------------------------------~~----------~~~--------------- 371 (538)
T PF02867_consen 364 ERS-----------------------------------------------KV----------EKG--------------- 371 (538)
T ss_dssp GSS-----------------------------------------------HH----------HCT---------------
T ss_pred ccc-----------------------------------------------cc----------ccc---------------
Confidence 000 00 000
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
..+ +.++|++||+++++||+|||+++|||||||||+|+|+|+||||+|++
T Consensus 372 ---------------------------~~~---~~~~W~~Lr~~i~~~G~RNs~~~aiAPTgs~S~i~g~S~gIeP~~~~ 421 (538)
T PF02867_consen 372 ---------------------------LSI---PTEDWDELREDIKKYGLRNSQLTAIAPTGSISLIAGTSSGIEPIFAN 421 (538)
T ss_dssp ---------------------------------TTSHHHHHHHHHHHH--SSSS-BBBS--TTHHHHHTS-STTS--SSS
T ss_pred ---------------------------ccc---chhhHHHHHHHHhhhcCCcceeecCCCCCCeEeecCcCceeccchhh
Confidence 001 23489999999999999999999999999999999999999999999
Q ss_pred eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 906 (998)
Q Consensus 827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD 906 (998)
+|.|++..|+|.++|+++.+.|+++|+|++++.++|..++|++|+++.+|++.+++|+||+||+|++||+|||++|||||
T Consensus 422 ~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~gsv~~~~~~~~~~~~~f~tA~ei~~~~~i~~~a~~Q~~vD 501 (538)
T PF02867_consen 422 VYTRRSLSGEFPVVNPYLLRDLKELGIWDEELIEEILRHQGSVQGLPELPDELKDVFKTAFEIDPEDHIRMQAARQKFVD 501 (538)
T ss_dssp EEEEEETTSCEEEE-HHHHHHHHHTTHHSHHHHHHHHHTTTCCTT-TTS-HHHHHHT--GGGSCHHHHHHHHHHHHTTSS
T ss_pred hhhhhhhcCCCcccChHHHHHHHHhCCcHHHHHHHHHhhhccccccccCCcchhhhcccHHhCCHHHHHHHHHHhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEe
Q psy1689 907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYL 942 (998)
Q Consensus 907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~ 942 (998)
||||+|||+| ++++++|.++|++||++||||+||||
T Consensus 502 qsiS~t~~~p~~~~~~~v~~~~~~A~~~GlK~~tyY~ 538 (538)
T PF02867_consen 502 QSISKTLNLPSDATVEDVAELYLYAWKLGLKGITYYR 538 (538)
T ss_dssp S-B-BEEEEGTTEEHHHHHHHHHHHHHTT-SEEECEE
T ss_pred cCcCceeeecCCCCHHHHHHHHHHHHHhCCCeeEEeC
Confidence 9999999999 88999999999999999999999996
No 41
>PRK06556 vitamin B12-dependent ribonucleotide reductase; Validated
Probab=100.00 E-value=2e-57 Score=556.17 Aligned_cols=271 Identities=21% Similarity=0.319 Sum_probs=232.9
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcC-cccccccCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG-ILQYDMWGVT 664 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g-~l~~d~~~~~ 664 (998)
..+|+||||+|||||+|++|||||||+||++|+++||++|+++|+++|++||+|+|+||.|++|+|... .+...
T Consensus 421 ~~~R~IGLGvmGlad~L~~lGi~YdS~ea~~la~~I~~~m~~~A~~aS~eLA~e~G~Fp~f~~s~~~~~~v~~~h----- 495 (953)
T PRK06556 421 RAFRQLGLGYANLGALLMATGLPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKH----- 495 (953)
T ss_pred HhccchhhhhhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhhhchhhhh-----
Confidence 467899999999999999999999999999999999999999999999999999999999999987532 11100
Q ss_pred CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689 665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI 744 (998)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 744 (998)
|. .|.. +..+. ..|
T Consensus 496 ------~~------------~~~~------------------------------~~~~~---------~~~--------- 509 (953)
T PRK06556 496 ------AA------------ANDA------------------------------IRPLG---------EVD--------- 509 (953)
T ss_pred ------hh------------hhhh------------------------------hhhhc---------cCc---------
Confidence 00 0000 00000 000
Q ss_pred HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCC-Ccccccc
Q psy1689 745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN-NESFEPY 823 (998)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~-s~giEP~ 823 (998)
..+......+|++|++.+++||+|||+++|||||||||+|+|| |+||||+
T Consensus 510 -----------------------------~~l~~~~~~~W~~l~~~~~~~G~RNa~~taIAPTGTiS~i~g~~SsGIEP~ 560 (953)
T PRK06556 510 -----------------------------AALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTTGIEPD 560 (953)
T ss_pred -----------------------------hhhhhhhhhhHHHHHHHHHHhCcccccceeecCchHHHHhcCCCCCCcccc
Confidence 0000013467999999999999999999999999999999999 9999999
Q ss_pred ccceEEEEcc-ccceEEechhHHHHHHHcCCChHHHHHHH--HhcCCccccCCCCChhhHhhhcccC-------CCChHh
Q psy1689 824 TSNIYSRRVL-SGEFQVVNHHLLRDLVELGLWDDNMKDQL--IVNNGSIQDIEGIPQKLKDLYKTVW-------EIPQKT 893 (998)
Q Consensus 824 ~a~~~~r~~~-~G~~~~~n~~l~~~l~~~G~~~~~~~~~i--~~~~Gsv~~i~~l~~~~k~~f~tA~-------ei~~~~ 893 (998)
|+++|.|++. +|.|.++|+++.+.|+++|++++++++.+ +..+|+|+++++||++++++|+||+ ||+|++
T Consensus 561 fa~v~~rk~~~~G~~~~vN~~~~~~L~~~G~~~~ei~~i~~~~~~~gsv~~~p~L~~e~~~vF~tA~~~~~g~rdI~p~~ 640 (953)
T PRK06556 561 FALVKYKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHIEGAPGLKPEHYAVFDCAMKPASGERSISPMG 640 (953)
T ss_pred eeeeeeEEeccCceeEEecHHHHHHHHHcCCCHHHHHHHHHHHHhCCCeecCCCCChHHhhhceeccccCCCCCccCHHH
Confidence 9999999865 57899999999999999999999876433 5678999999999999999999999 999999
Q ss_pred HHHHHHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 894 VLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 894 ~I~m~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
||+|||++||||||||||||||| ++|++||.++|++|||+||||+||||++++..|++....+
T Consensus 641 hI~m~Aa~Q~fID~aiSkTvnlp~~at~edv~~~y~~Awk~GlKgit~YRdgsk~~qvL~~~~~ 704 (953)
T PRK06556 641 HVRMMAAVQPFLSGAISKTVNMPEDATVEDIEEVYLEGWKLGLKALAIYRDNCKVGQPLNTSKK 704 (953)
T ss_pred HHHHHHHHhhhcccccceEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEcCCCcccceeecccc
Confidence 99999999999999999999999 8899999999999999999999999999999999988654
No 42
>PRK06406 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.7e-56 Score=542.24 Aligned_cols=232 Identities=22% Similarity=0.324 Sum_probs=218.2
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++||+||||+||++|+++||++|+++|+++|++||+|+|+||.|++|.|++
T Consensus 498 ~~~R~IGLGvmGlad~L~~lgi~YdS~eA~~l~~~i~~~i~~~a~~aS~~LAkErG~fp~f~~s~~~~------------ 565 (771)
T PRK06406 498 RMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPAWYGSEWEK------------ 565 (771)
T ss_pred hhcCCceechHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCccchhh------------
Confidence 46799999999999999999999999999999999999999999999999999999999999987621
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 566 -------------------------------------------------------------------------------- 565 (771)
T PRK06406 566 -------------------------------------------------------------------------------- 565 (771)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
...|+|||+++|||||||||+|+|||+||||+||
T Consensus 566 ----------------------------------------------~~~g~RNs~ltaiAPTgSiS~i~g~SsGIEP~fa 599 (771)
T PRK06406 566 ----------------------------------------------KGIKMRNSTTTTIAPTGTISIIAGCSSSIEPLFA 599 (771)
T ss_pred ----------------------------------------------cCCcccccceeeeCCcchhhhhcCCCCccCccch
Confidence 0137999999999999999999999999999999
Q ss_pred ceEEEEccccc-eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~G~-~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|+|++++|+ |.++||+|.+.|++.|+|++++++++ .++|++|++ .+|++++++|+||+||+|+|||+|||++|||
T Consensus 600 ~~y~R~v~~g~~~~~vn~~l~~~l~~~g~~~~~~~~~i-~~~gs~~~~-~~p~~~~~~f~tA~dI~~~~~i~m~A~~Qk~ 677 (771)
T PRK06406 600 IAFVRHVLNGQELLEVNPLFEEITRKRGLYSEELMRKV-AETGNLQNI-DVPEDIKRIFVTAHEIDPQWHVLMQATFQRY 677 (771)
T ss_pred hheEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhCCCcccc-cCChHHHhhcccHHhCCHHHHHHHHHHHccc
Confidence 99999999885 78999999999999999999999886 578999999 7999999999999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhh
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~ 957 (998)
||||||+||||| +++.+||.++|++||++||||+||||.+++..|++.++..+
T Consensus 678 vDqsiSkTinlp~~~t~~dv~~~y~~Aw~~GlKgitvYR~~s~~~qvl~~~~~~ 731 (771)
T PRK06406 678 CDSGVSKTINLRYDATPEDIAKAYRLAKDLHCKGITVYRDKSKTVQVLYAGTKT 731 (771)
T ss_pred ccCcccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCCcccceeeccCcc
Confidence 999999999999 78999999999999999999999999999999999886553
No 43
>PRK08115 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.2e-56 Score=540.58 Aligned_cols=242 Identities=23% Similarity=0.299 Sum_probs=213.5
Q ss_pred hccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCC
Q psy1689 584 CRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 663 (998)
Q Consensus 584 c~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~ 663 (998)
....+|+||||+|||||+|++|||||||+||++|+++||++|+++|+++|++||+|+|+||.|++|.|++|.++.+.|..
T Consensus 541 ~~~~~R~IGLGvmGLAD~L~~lgIpYdSeEA~~l~~~I~e~I~~~A~~AS~eLAkErG~FP~f~gs~~~~~~~~r~~~~~ 620 (858)
T PRK08115 541 QALGERRVGLGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEEETAKLREAFIN 620 (858)
T ss_pred HhhhcCCeeechhhHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCchhhhhHHHhhhhh
Confidence 44578999999999999999999999999999999999999999999999999999999999999999877654322100
Q ss_pred CCccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHH
Q psy1689 664 TPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYE 743 (998)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 743 (998)
. +|
T Consensus 621 --------------------------------~--~~------------------------------------------- 623 (858)
T PRK08115 621 --------------------------------T--GY------------------------------------------- 623 (858)
T ss_pred --------------------------------c--cc-------------------------------------------
Confidence 0 00
Q ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccc
Q psy1689 744 IIMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823 (998)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~ 823 (998)
....|..|++.|++||+||||++|||||||||+|+|||+||||+
T Consensus 624 ------------------------------------~~~~~~~Lre~I~k~GiRNS~ltaIAPTGSiS~Iag~SsGIEPi 667 (858)
T PRK08115 624 ------------------------------------MKKMPEDIREDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPY 667 (858)
T ss_pred ------------------------------------cccCcHHHHHHHHHhCcchhceeeeCChHHHHHHhCCCcccCcC
Confidence 11246899999999999999999999999999999999999999
Q ss_pred ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903 (998)
Q Consensus 824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~ 903 (998)
||++|.|++..|+|+++|+++++.+.+.+.| ..|++++.+|+||+||+|++||+|||++||
T Consensus 668 fs~~y~R~~~~G~f~~vn~~~~~~~l~~~~~-------------------~~~~~l~~~F~TA~eI~p~~hI~mqAa~Qk 728 (858)
T PRK08115 668 FSFSYYRSGRLGKFIEVKADIVQEYLDKHPE-------------------ADENHLPEWFISAMELKPEAHADVQCIIQR 728 (858)
T ss_pred eeeeEEEEeccCceEEEchHHHHHHHHhCCC-------------------CCchhHHHhcccHhhCCHHHHHHHHHHHcc
Confidence 9999999999999999999987655443221 135667789999999999999999999999
Q ss_pred cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhh
Q psy1689 904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 957 (998)
Q Consensus 904 ~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~ 957 (998)
|||||||+|||+| ++|++||.++|++||++||||+||||++++.+|++......
T Consensus 729 ~VDqsISkTInlP~~at~edV~~iY~~Awk~GlKGiTvYrdGSr~~qvL~~~~~~ 783 (858)
T PRK08115 729 WVDSSLSKTVNAPKGYTVEQVQKVYERLYRGGAKGGTVYVDGSRDAQVLTLKAEE 783 (858)
T ss_pred ccchhhcCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCccceeeeecccc
Confidence 9999999999999 77999999999999999999999999999999999876554
No 44
>TIGR02510 NrdE-prime ribonucleoside-diphosphate reductase, alpha chain. This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain.
Probab=100.00 E-value=1.7e-56 Score=530.16 Aligned_cols=227 Identities=29% Similarity=0.404 Sum_probs=212.1
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||||||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+|+.
T Consensus 330 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~~l-------------------- 389 (571)
T TIGR02510 330 EKARAIGLGTLGFHSYLQMNDIAFESGAAFILNAEIFAEIKEAAEEASRELAEEHGEDEL-------------------- 389 (571)
T ss_pred HhcCCcccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcchh--------------------
Confidence 467999999999999999999999999999999999999999999999999999998530
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 390 -------------------------------------------------------------------------------- 389 (571)
T TIGR02510 390 -------------------------------------------------------------------------------- 389 (571)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcC-CCccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG-NNESFEPYT 824 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g-~s~giEP~~ 824 (998)
+++++++|+|||+++|||||||||+|+| ||+||||+|
T Consensus 390 ------------------------------------------~~~~~~~G~RNs~l~aiAPTgSiS~i~g~~S~gIEP~f 427 (571)
T TIGR02510 390 ------------------------------------------AEVCEGKEMRNATLIAIAPNKSSAFIAGGVSPGIEPLT 427 (571)
T ss_pred ------------------------------------------HHHHHhcCceeceeeeeCCcchHHHHhCCCCCCcCcch
Confidence 0122467999999999999999999997 899999999
Q ss_pred cceEEEEccccceEEechhHHHHHHHcCCC---hHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHh
Q psy1689 825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLW---DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901 (998)
Q Consensus 825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~---~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~ 901 (998)
+++|+|++.+|+|+++||+|.+.|+++|+| ++++++.|..++||||+++++|++++++|+||+||+|++||+|||++
T Consensus 428 a~~y~r~~~~g~~~~vn~~l~~~l~~~g~~~~~~~~~~~~i~~~~gsv~~~~~l~~~~~~~f~tA~ei~~~~~I~m~A~~ 507 (571)
T TIGR02510 428 CNSFIKDLNAADFPFKNPFLAEVLKDKGKDKEIEEKMEDIALEHNGSVQHLDFLTDEEKAVFKTAAEIDQHAIINLAAAR 507 (571)
T ss_pred hhhhhhhccCCceEEECHHHHHHHHhcCCccccHHHHHHHHHHcCCCccccccCChHHHhHcCcHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999999 78899999999999999999999999999999999999999999999
Q ss_pred CCcccccccceeecC--CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhh
Q psy1689 902 GAFIDQSQSLNIYMA--EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955 (998)
Q Consensus 902 Q~~iDqsiS~tl~~~--~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~ 955 (998)
|||||||||+|+|++ +.+.+|+.++|++|||+|||| +||+|+++.++++.-++
T Consensus 508 Q~~IDqsiS~Nl~~~~~~~~~~d~~~~y~~Aw~~GlK~-~YY~rs~~~~~~~~~~~ 562 (571)
T TIGR02510 508 QKHIDQAQSINLFFHADEAEPRDANAHRAFADDPGLKA-LYYLFSERGAKASSGDL 562 (571)
T ss_pred ccccccccCCccccCCCCCCHHHHHHHHHHHHHcCCCe-EEeecchHHHHhhhccc
Confidence 999999999999996 478999999999999999999 89999999888766554
No 45
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.2e-55 Score=537.72 Aligned_cols=233 Identities=25% Similarity=0.410 Sum_probs=219.0
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|.+|.+
T Consensus 342 ~~~R~IGLGv~Glad~L~~lgi~Y~S~ea~~l~~~i~~~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~~~~--------- 412 (752)
T PRK08665 342 KGNRKIGLGVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGSIYDKDGL--------- 412 (752)
T ss_pred HhcCccccchhhHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCcchhccc---------
Confidence 36799999999999999999999999999999999999999999999999999999999999998742210
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 413 -------------------------------------------------------------------------------- 412 (752)
T PRK08665 413 -------------------------------------------------------------------------------- 412 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
.|+|||++||||||||||+|+|||+||||+|+
T Consensus 413 ------------------------------------------------~~~RNs~~taiAPTgTiS~i~g~SsGIEP~fa 444 (752)
T PRK08665 413 ------------------------------------------------GPMRNATVTTIAPTGTISIIAGCSSGIEPLFA 444 (752)
T ss_pred ------------------------------------------------ccccccceeeeCCccHHHhhcCCCCccCcccc
Confidence 26899999999999999999999999999999
Q ss_pred ceEEEEccccc-eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLSGE-FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~G~-~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|+|++..|+ +.++|++|.+.|+++|+|++++++.+ ..+|++|+++.||++++.+|+||+||+|++||+|||++|||
T Consensus 445 ~~y~R~v~~g~~~~~vn~~~~~~l~~~g~~~~~~~~~~-~~~gs~~~~~~lp~~~~~~f~tA~di~~~~~i~m~A~~Q~~ 523 (752)
T PRK08665 445 LSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELMEKI-AEKGSIQDIDEVPEDVRRVFVTAHDISPEWHVRMQAAFQKH 523 (752)
T ss_pred ceeEEEecCCceeEEecHHHHHHHHHcCCCcHHHHHHH-HhcCCcccCCCCChHHHHhcCcHhhCCHHHHHHHHHHHccc
Confidence 99999999887 67899999999999999999998886 57899999999999999999999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
||||||+||||| +++.+||.++|++||++||||+||||++++..|++....+
T Consensus 524 vD~siSkTvn~p~~~t~~dv~~~y~~Aw~~GlKg~t~YR~gs~~~~vl~~~~~ 576 (752)
T PRK08665 524 TDNAVSKTVNFPNEATIEDVREVYRLAYELGCKGVTIYRDGSRDEQVLSTGKK 576 (752)
T ss_pred cchhccCceecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCcccceeccccc
Confidence 999999999999 7899999999999999999999999999999999887543
No 46
>PRK09102 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1e-55 Score=526.25 Aligned_cols=224 Identities=33% Similarity=0.525 Sum_probs=213.0
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++||+||+|+||++|+++||++|+++|+++|++||+|+|+||.|+
T Consensus 350 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~ErG~~p~~~------------------ 411 (601)
T PRK09102 350 MRERSVGLGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQADKASKELAKEKGECPDAA------------------ 411 (601)
T ss_pred HhcCccccchhHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchh------------------
Confidence 36799999999999999999999999999999999999999999999999999999998532
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 412 -------------------------------------------------------------------------------- 411 (601)
T PRK09102 412 -------------------------------------------------------------------------------- 411 (601)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhc--ccccceecCCCCcchhhhc-CCCccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHG--VRNSLLIAPMPTASTAQIL-GNNESFEP 822 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G--~RNs~~~aiAPTgSiS~i~-g~s~giEP 822 (998)
++| +|||+++|||||||||+|+ |+|+||||
T Consensus 412 -----------------------------------------------~~G~~~RNs~l~aiAPTgS~S~i~~g~S~gIEP 444 (601)
T PRK09102 412 -----------------------------------------------GYGVMRRFSTKMAIAPTASISIILGNTSPGIEP 444 (601)
T ss_pred -----------------------------------------------hhCchhcccceeeeCCCcHHHHHcCCCCCCccc
Confidence 246 8999999999999999999 78999999
Q ss_pred cccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902 (998)
Q Consensus 823 ~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q 902 (998)
+|+++|+|++.+|+|.++||+|.++|+++|+|+++++++++.+.||+|+++++|++++++|+||+||+|++||+|||++|
T Consensus 445 ~fs~~y~R~~~~g~~~~~n~~l~~~l~~~g~~~~~~~~~~~~~~gsvq~~~~~~~~~~~~f~tA~ei~~~~~i~~~A~~Q 524 (601)
T PRK09102 445 IAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDTDEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQ 524 (601)
T ss_pred chhhheeEeecCceEEEECHHHHHHHHHcCCChHHHHHHHHhcCCCcccCccCChhHHhhcCcHhhCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhh
Q psy1689 903 AFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTI 955 (998)
Q Consensus 903 ~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~ 955 (998)
||||||||+||||| +++++||.++|++|||+|||| +||+|+++.+++.++.-
T Consensus 525 ~~VDqsiS~tln~~~~~t~~dv~~~y~~Awk~GlK~-~yy~R~~~~~~~~~~~~ 577 (601)
T PRK09102 525 KYIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSH 577 (601)
T ss_pred ccccccccCceecCCCCCHHHHHHHHHHHHHhCCCE-EEEEcCchhhhhHHhcc
Confidence 99999999999999 779999999999999999999 56679999998887743
No 47
>PRK08447 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=5e-56 Score=538.39 Aligned_cols=230 Identities=32% Similarity=0.536 Sum_probs=203.6
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|+|+...
T Consensus 543 ~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~d~~~~~~ 622 (789)
T PRK08447 543 LKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEA 622 (789)
T ss_pred hcCCCeeeeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcCccchhhhhchh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999988775321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.. + .+.+ +
T Consensus 623 ~~----------------------~---~~~~---------------------------------~-------------- 630 (789)
T PRK08447 623 KK----------------------L---VERG---------------------------------G-------------- 630 (789)
T ss_pred hh----------------------h---hccc---------------------------------c--------------
Confidence 00 0 0000 0
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
+ ....++|++|+++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus 631 -----------------------~--------~~~~~dW~~L~~~I~k~GlRNs~l~AiAPTgS~S~i~g~S~gIEP~~s 679 (789)
T PRK08447 631 -----------------------L--------FDSACDWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYK 679 (789)
T ss_pred -----------------------c--------ccchhhHHHHHHHHHHhCccccceeeeCChHHHHHHhCCCcCcCcccc
Confidence 0 003569999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|+|++.+|+|+++||+|. ++.+++|+|||||+|++||+|||++||||
T Consensus 680 ~~~~~~~~~g~~~~~~p~L~-------------------------------~~~~~~y~tA~ei~~~~~I~~~A~rQk~I 728 (789)
T PRK08447 680 RKWFEENLSGLIPVVVPNLS-------------------------------PETWQYYTPAYDLDQKDLIKAAAVRQKWI 728 (789)
T ss_pred hheeEEeccceeEeeCCCCC-------------------------------hHHHHHhchHHhCCHHHHHHHHHHHhccc
Confidence 99999999999999988752 33457999999999999999999999999
Q ss_pred cccccceeecC--CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccc
Q psy1689 906 DQSQSLNIYMA--EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950 (998)
Q Consensus 906 DqsiS~tl~~~--~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~ 950 (998)
|||||+||||| +++.++|.++|++|||+|||| +||+|+++....
T Consensus 729 DQsiS~nl~~~~~~~t~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~~~ 774 (789)
T PRK08447 729 DQGQSLNIFLSLDKASGKYLNEIYTLAWKLGLKS-TYYLRSESPESE 774 (789)
T ss_pred chhhcCccccCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeccchhhc
Confidence 99999999999 479999999999999999999 688899886643
No 48
>TIGR02504 NrdJ_Z ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ.
Probab=100.00 E-value=2.8e-55 Score=526.11 Aligned_cols=245 Identities=28% Similarity=0.435 Sum_probs=228.4
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
.+|+||||+|||||+|++||+||+|+||++++++||+.|+++|+++|++||+|+|+||.|++|+|++|.+++..+
T Consensus 340 ~~R~iGlGv~Glad~L~~lgi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~~~----- 414 (586)
T TIGR02504 340 KTRRIGLGIMGLADLLIKLGIPYDSEEARAFAEELMAFIADAAYRASAELAKERGPFPLFEASRYEMGRAMGARI----- 414 (586)
T ss_pred cCCccccchhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccccccccc-----
Confidence 578999999999999999999999999999999999999999999999999999999999999999887741100
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
T Consensus 415 -------------------------------------------------------------------------------- 414 (586)
T TIGR02504 415 -------------------------------------------------------------------------------- 414 (586)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
....|.+|++.+++||+|||+++|||||||||+|+|||+||||+|++
T Consensus 415 ---------------------------------~~~~~~~L~~~i~~~G~RNs~l~aiaPTgtiS~i~g~S~gieP~~a~ 461 (586)
T TIGR02504 415 ---------------------------------PSALPAELREAIAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFAL 461 (586)
T ss_pred ---------------------------------cccChHHHHHHHHHhCCCccceeeeCCCchhhhhcCCCCccccchhh
Confidence 01257899999999999999999999999999999999999999999
Q ss_pred eEEEEcccc-ceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 827 IYSRRVLSG-EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 827 ~~~r~~~~G-~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
+|.|++..| +|.++|+++.+.|++.|++++++++. +..+|+++++++ |++++.+|+||+||+|++||+|||++||||
T Consensus 462 ~y~r~~~~g~~~~~~n~~l~~~l~~~g~~~~~~~~~-~~~~gs~~~~~~-p~~~~~~f~tA~di~~~~~i~~~a~~Q~~v 539 (586)
T TIGR02504 462 VYFRNVTVGGELLEVNPIVELALRELGYYSDQIVKY-VDEKGTVEGAPG-PEELPKVFVTANDVSPEDHVLMQAAIQPWV 539 (586)
T ss_pred hhheeeccCCcEEEeCHHHHHHHHHcCCChHHHHHH-HHcCCCcccCCC-chhHHhhccCcccCCHHHHHHHHHHHcCcc
Confidence 999999987 89999999999999999999998875 467899999999 999999999999999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccch
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~ 951 (998)
|||||+||||| +++.+||.++|++||++||||+||||.+++..|++
T Consensus 540 D~siS~ti~~~~~~~~~~v~~~y~~A~~~GlK~it~yR~~s~~~~~~ 586 (586)
T TIGR02504 540 DSSISKTINMPSDATVEDVKAAYLLAWKLGLKGITVYRDGSRSSQVL 586 (586)
T ss_pred cccccCeeecCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCcCCCcC
Confidence 99999999999 78999999999999999999999998888887764
No 49
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=100.00 E-value=1.7e-54 Score=518.67 Aligned_cols=355 Identities=14% Similarity=0.118 Sum_probs=290.6
Q ss_pred chhhhhhHHHHHHHHh-------------------------hhccccccccceEEEecCCcccHHHHHHhhhcCCccccc
Q psy1689 68 SDSWGEKFDDLYKKYE-------------------------AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFR 122 (998)
Q Consensus 68 ~~s~g~~F~~lY~~~E-------------------------~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r 122 (998)
..+.+..|.++|.... ...++|.||||.|..|+++||||++|+.+|+..+. .
T Consensus 230 ~ASGPvsl~~l~~~i~~iL~~~~G~~Lt~id~~di~~~~~~~Vv~GgvRRgA~M~~l~~dhpdi~~fi~aK~~~~~---~ 306 (713)
T TIGR02505 230 TASGPVPLAKMLTDVAEILSNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAEMALFSNDDPEFESFKQAKEKLMH---H 306 (713)
T ss_pred CCCCcHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHhheeeecCccccceeeccCCCChHHHHHHhccccccc---c
Confidence 3466788998886541 22356899999999999999999999999986542 2
Q ss_pred ccccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCce
Q psy1689 123 ARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPY 202 (998)
Q Consensus 123 ~~~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pg 202 (998)
.+++|+||.|+|.||.. .++...+|++|+||
T Consensus 307 ~~~~N~SV~v~d~f~~~-------------------------------------------------~~~~~~~~~~gePg 337 (713)
T TIGR02505 307 RWASNNSVAVDSAFSGL-------------------------------------------------ARSAADILENGEPG 337 (713)
T ss_pred cccccceeEechhHHHH-------------------------------------------------hhhhccccccCCcc
Confidence 37899999999999821 12233557899999
Q ss_pred eEehhh-------hhhhCCCCCCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHH
Q psy1689 203 MLYKDA-------CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKN 275 (998)
Q Consensus 203 l~f~D~-------~Nr~~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~ 275 (998)
++|.|+ +|+.++.++.|.|.+||||+||+|++ +++|||+||||.+|+.. -+.|.+++++++|+
T Consensus 338 ~~fid~~~~~~~~in~~~~~~~~~~I~~tNPCgEi~L~~----~~~CNL~sINL~~~~~~------~~~l~~~~~~avr~ 407 (713)
T TIGR02505 338 QVNLDLSKSEGRIVNGRYQAGEDGDVEGTNPCGEILLAN----GEPCNLFEVNLLAFEED------GWGLQRAFALAARY 407 (713)
T ss_pred hhhHhhhhccccccccccccccCCceeecCCCccccCCC----CCceechhccHHhhccc------HHHHHHHHHHHHHH
Confidence 999999 57777778889999999999999874 35899999999999752 26899999999999
Q ss_pred HHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 276 LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL-------------PFDCNESRLLNKQIFETIYYGALEAS 342 (998)
Q Consensus 276 LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl-------------~Y~S~ea~~l~~~I~e~i~~~A~~aS 342 (998)
||+||+ +.||+|++++.++++|+||||+|||||+|+++|+ +|+|......+.++++.++..+.++|
T Consensus 408 Ld~vi~-~~~pl~~~~~~~~~~R~IGlGv~Glad~L~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a 486 (713)
T TIGR02505 408 AKRVTF-SPYDDEISREIIQKNRRIGVSMSGIQDFLLLRGGTGFKDDFDPETHEAIKVRVYDKRAAKFLDRMYKIVVKAA 486 (713)
T ss_pred HHHHHh-ccCChHHHHHHHHhcCCceeehhhHHHHHHHcCCcccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 999995 5799999999999999999999999999999998 77777777788888888999999999
Q ss_pred HHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccc
Q psy1689 343 CEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 422 (998)
Q Consensus 343 ~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~ 422 (998)
.++|+++|. .||+.+|+||||||+|+|+|+|+||||+||+
T Consensus 487 ~~~s~elg~----------------------------------------~r~~~~TTIaPTGTiS~laG~S~GIeP~~A~ 526 (713)
T TIGR02505 487 QDYSKELGC----------------------------------------PEPIKHTTVKPSGTISKLAGASEGIHPPYGA 526 (713)
T ss_pred HHHHHHhCC----------------------------------------CCccceeeeCCccchHHhcCCCCccCcchhh
Confidence 999999995 2688999999999999999999999999999
Q ss_pred eEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccc----ccCCCChhh----hhhccccc--CCChHHHHH
Q psy1689 423 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ----DIEGIPQKL----KDLYKTVW--EIPQKTVLD 492 (998)
Q Consensus 423 ~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~----~~~~lp~~~----k~~f~tA~--ei~~~~~I~ 492 (998)
+|+|++. +.+|++|.+.|++.||+.+..... ....|... .+..+|.+. ..-..+|. |+++.+|++
T Consensus 527 ~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~ve~p~~~~~~~~~~~~~a~~~diS~~~ql~ 601 (713)
T TIGR02505 527 YLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTLVEFPIKAVGADNPNIAEVGINTVSAAAQFA 601 (713)
T ss_pred heeeeee----eecCcHHHHHHHHcCCCCCccccc-cccccccccccceeEEeeecccccCCCCCcccccccCCHHHHHH
Confidence 9999983 468999999999999987632111 00011110 011122211 01123455 999999999
Q ss_pred HHHHhCC-ccccccceeEeecCCCHHHHHHHHHHHHHcC
Q psy1689 493 MAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLG 530 (998)
Q Consensus 493 m~a~~Q~-~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~G 530 (998)
+|+..|+ |+|+++|+||++++...++|..++.++|+..
T Consensus 602 ~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~ 640 (713)
T TIGR02505 602 FYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS 640 (713)
T ss_pred HHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence 9999999 8999999999999766999999999999844
No 50
>PRK09103 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=5.7e-55 Score=529.02 Aligned_cols=231 Identities=27% Similarity=0.408 Sum_probs=207.7
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||||.|....
T Consensus 505 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~~~~~~~~~~ 584 (758)
T PRK09103 505 MGRRTLGIGVINFAYYLAKNGVRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDL 584 (758)
T ss_pred hhcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCchhhhhhhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998774321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.+ .
T Consensus 585 ~~-----------------------------~------------------------------------------------ 587 (758)
T PRK09103 585 DA-----------------------------I------------------------------------------------ 587 (758)
T ss_pred cc-----------------------------c------------------------------------------------
Confidence 00 0
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
.+....++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 588 ------------------------------~~~~~~~dW~~Lr~~i~~~GlRNs~l~AiaPTgS~S~i~g~s~giEP~~s 637 (758)
T PRK09103 588 ------------------------------CNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 637 (758)
T ss_pred ------------------------------ccccchhhHHHHHHHHHHhCccccceeecCCcHHHHHHhCcCCCcCcccc
Confidence 00013479999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCC-ChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei-~~~~~I~m~a~~Q~~ 904 (998)
|+|+|++.+|.+..++|.+. +++..|+++|+| +|+++|+|+|+||||
T Consensus 638 ~~~~k~~~~g~~~~~~p~~~--------------------------------~~~~~y~~~~~i~~~~~~I~~~A~rQ~~ 685 (758)
T PRK09103 638 YVSIKASKDGILKQVVPDYE--------------------------------RLKDAYELLWEMPNNDGYLQLVGIMQKF 685 (758)
T ss_pred ceeeeeccCceeeecCCCHH--------------------------------HHHHHHHHHHhccChHHHHHHHHHHhhh
Confidence 99999999998877777652 234678999999 589999999999999
Q ss_pred ccccccceeecC-C------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 905 IDQSQSLNIYMA-E------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 905 iDqsiS~tl~~~-~------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
||||||+|||++ + ++.++|.++|++|||+|||| +||+|++++++++|||+.
T Consensus 686 VDQsqS~nl~~~~~~~~~~~~t~~~l~~~~~~Aw~~GlKT-~YY~rs~~~~~~~~~~~~ 743 (758)
T PRK09103 686 VDQSISANTNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTRDGAEDAQDDLQ 743 (758)
T ss_pred cchhhcceeeecccccccCCCCHHHHHHHHHHHHHhCCce-EeecCchhhhhhhhhhcc
Confidence 999999999984 3 68999999999999999999 799999999999999987
No 51
>PRK07632 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=6.3e-55 Score=524.82 Aligned_cols=234 Identities=22% Similarity=0.389 Sum_probs=202.3
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVT 664 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~ 664 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|...
T Consensus 455 ~~~R~IGLGvmGLad~La~~gi~Y~S~eA~~~~~~ife~i~~~A~~aS~eLAkE~G~~f~~f~~S~~~~G~~-f~~~~~~ 533 (699)
T PRK07632 455 SELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKY-FEKYTTQ 533 (699)
T ss_pred hccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccCcChhhccch-Hhhhhhc
Confidence 35689999999999999999999999999999999999999999999999999999 999999999999998 7776432
Q ss_pred CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689 665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI 744 (998)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 744 (998)
+ |. |. .+.+.++++
T Consensus 534 ~-----~~--------------------------~~---------------~~~v~~~~~-------------------- 547 (699)
T PRK07632 534 D-----FE--------------------------PK---------------FEKVRELFE-------------------- 547 (699)
T ss_pred c-----cc--------------------------hh---------------hhhhhhhhc--------------------
Confidence 1 10 00 000101110
Q ss_pred HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccc
Q psy1689 745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 824 (998)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~ 824 (998)
| ..+| +.++|++|+++|++||+|||+++|||||||||+|+|||+||||++
T Consensus 548 -----------------------~-----~~~~--~~~dW~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~siePi~ 597 (699)
T PRK07632 548 -----------------------G-----MHIP--TKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIV 597 (699)
T ss_pred -----------------------c-----cCCC--chhhHHHHHHHHHHhCcccccccccCCchHHHHHhCCCccHHHHH
Confidence 0 0122 468999999999999999999999999999999999999999999
Q ss_pred cceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++++.|+... .++++++|+||++.+++|+|||||+|++||+|+|++|||
T Consensus 598 s~i~~r~~~~-------------------------------~~~~~~~p~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q~~ 646 (699)
T PRK07632 598 DQIERRTYGN-------------------------------AETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTH 646 (699)
T ss_pred HHHHhhhcCC-------------------------------CCceeeCccCCHHHHHHhccHhhCCHHHHHHHHHHHccc
Confidence 9988765421 356678999999999999999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
||||||+||||| ++|.+||.++|++|||+|||| +||+|+++.+
T Consensus 647 IDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~Rt~~~~ 690 (699)
T PRK07632 647 IDQGISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNKLLS 690 (699)
T ss_pred chhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEeeccccc
Confidence 999999999999 679999999999999999999 8999997765
No 52
>PHA02572 nrdA ribonucleoside-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=1.1e-54 Score=526.92 Aligned_cols=230 Identities=26% Similarity=0.415 Sum_probs=207.1
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+|| +|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||+|.|...+
T Consensus 502 ~~~R~IGLGv~Glad~L~~lgi~Y~S~eA-~l~~~i~e~i~~~A~~aS~eLAkE~G~~p~f~~S~~~~G~~~~~~~~~~~ 580 (753)
T PHA02572 502 KKRRSLGVGVTNYAHYLAKNFASYEDANA-DLVHELFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKV 580 (753)
T ss_pred hhcCccccchhHHHHHHHHCCCCcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcChhhcccchhhcccchh
Confidence 45789999999999999999999999999 99999999999999999999999999999999999999999998775321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
.. +
T Consensus 581 ~~------------------------------------------------------~----------------------- 583 (753)
T PHA02572 581 DE------------------------------------------------------L----------------------- 583 (753)
T ss_pred hh------------------------------------------------------h-----------------------
Confidence 00 0
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
.++...++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 584 ------------------------------~~~~~~~dW~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~giEP~~s 633 (753)
T PHA02572 584 ------------------------------VAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRG 633 (753)
T ss_pred ------------------------------cccchhhhHHHHHHHHHHhCccccceeeeCCcHHHHHHhCCCCccCcccc
Confidence 00113479999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCC---ChHhHHHHHHHhC
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI---PQKTVLDMAADRG 902 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei---~~~~~I~m~a~~Q 902 (998)
++|+|++.+|+|.++||++. +++++|+||||| +|+++|+|||+||
T Consensus 634 ~~~~r~~~~G~~~~~~p~l~--------------------------------~~~~~ykta~~i~~~~~~~~i~~~A~rq 681 (753)
T PHA02572 634 PVSIKKSKEGPFNQVVPNVE--------------------------------TLKDLYDLLWDLAKKGNKGYLTQVAIMQ 681 (753)
T ss_pred cEEEEEecCceEEEeCCCHH--------------------------------HHHHHHHhHHHhcccChHHHHHHHHHHh
Confidence 99999999999999999862 235789999999 9999999999999
Q ss_pred CcccccccceeecCC-------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 903 AFIDQSQSLNIYMAE-------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 903 ~~iDqsiS~tl~~~~-------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
||||||||+|||++. .+.++|.++|++|||+|||| +||+|++++++++-..+.
T Consensus 682 ~~IDQsqS~nl~~~~~~~~~~~~~~~~l~~~~~~Aw~~GlKT-~YY~rt~~~~~~~~~~~~ 741 (753)
T PHA02572 682 KFVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDGKGTEDYEIE 741 (753)
T ss_pred ccCchhhcceeeecCCcCcccccCHHHHHHHHHHHHHhCCce-EeecCccccccccccccc
Confidence 999999999999852 47899999999999999999 799999999988766554
No 53
>PRK09209 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1e-54 Score=527.69 Aligned_cols=214 Identities=28% Similarity=0.473 Sum_probs=196.1
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||.|+.
T Consensus 537 ~~~R~IGLGv~Glad~L~~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkE~G~~~~f~~S~~~~g~~-~~~~~~-- 613 (761)
T PRK09209 537 QKYRAIGLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDWQTGEY-FERRGY-- 613 (761)
T ss_pred HhccccccchhhHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhhcCC--
Confidence 45789999999999999999999999999999999999999999999999999999999999999999986 443210
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 614 -------------------------------------------------------------------------------- 613 (761)
T PRK09209 614 -------------------------------------------------------------------------------- 613 (761)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
..++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 614 ----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~t~giEP~~s 659 (761)
T PRK09209 614 ----------------------------------NSPQWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYS 659 (761)
T ss_pred ----------------------------------chhhHHHHHHHHHHhCcchhceeeeCCcHHHHHHcCCCCccCcchh
Confidence 1247999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhh-cccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|.|+..+|.+.++ ++.||++.+++| +|||||+|++||+|||++|||
T Consensus 660 ~~y~r~~~~~~~~~~-------------------------------~p~l~~~~~~~y~~tA~ei~~~~~I~~~A~rQ~~ 708 (761)
T PRK09209 660 AFYYEEKKDYRRPVT-------------------------------APDLSLDTWPYYEKGAYKVDQFWSIRQNAARQRH 708 (761)
T ss_pred hHhhhhhccceeecc-------------------------------CCCCChhHHHHHhhhHhhCCHHHHHHHHHHHccc
Confidence 999998877766543 455788889999 999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
||||||+||||| +.+.++|.++|++|||+|||| +||+|+++..
T Consensus 709 IDQsiS~nl~~~~~~~~~~l~~~y~~Awk~GlKt-~YY~Rt~~~~ 752 (761)
T PRK09209 709 VDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYVRSTDID 752 (761)
T ss_pred ccccccCceeCCCCCCHHHHHHHHHHHHHhCCCe-EEEeeccCcc
Confidence 999999999999 678999999999999999999 7999997764
No 54
>PRK07187 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=1.3e-54 Score=523.62 Aligned_cols=238 Identities=24% Similarity=0.378 Sum_probs=196.6
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
..|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|++||++||+|+|+||.|++|+|++|.+ ||.|.....
T Consensus 458 ~~R~IGLGvmGlad~La~lgi~Y~S~eA~~~~~~i~e~i~~~A~~aS~eLAkErG~fp~f~~S~~~~G~~-~~~~~~~~~ 536 (721)
T PRK07187 458 ANHAVGLGAMNLHGFLATNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSY-FDKYTKEDA 536 (721)
T ss_pred hcCcccchHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccChhhccch-hhhhhhccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999987 565543211
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
+.| . |. ...+++++.. .
T Consensus 537 ~~~--~--------------------------~~---------------~~~~~~~~~~----~---------------- 553 (721)
T PRK07187 537 KKW--T--------------------------PK---------------TAKVKELLQK----Y---------------- 553 (721)
T ss_pred ccc--C--------------------------cc---------------hhhhhhhhhh----c----------------
Confidence 100 0 10 0011111100 0
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
| ..+| ..++|++|+++|++||+|||+++|||||||||+|+|||+||||+|++
T Consensus 554 ---------------------~-----~~~~--~~~~W~~L~~~i~k~GlRNs~l~AiAPTgSiS~i~g~s~gIEP~~s~ 605 (721)
T PRK07187 554 ---------------------G-----VTIP--TQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAP 605 (721)
T ss_pred ---------------------c-----cccc--chhhHHHHHHHHHHhCcccceeeeeCCcchHHHHhCCCcchhHhhhh
Confidence 0 0112 46799999999999999999999999999999999999999999999
Q ss_pred eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhh-cccCCCChHhHHHHHHHhCCcc
Q psy1689 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f-~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
+|+|+..++..+.+ +.+.+|++.+++| +|||||+|++||+|||++||||
T Consensus 606 ~~~R~~~~~~~~~~------------------------------~~~~l~~~~~~~y~~tA~eI~~~~~I~~~A~~Qk~I 655 (721)
T PRK07187 606 VEVRKEGKLGRIYV------------------------------PAYKIDQDNYAYYERGAYEVGPKPIIDIVAAAQKHV 655 (721)
T ss_pred hheeeccCCceEEc------------------------------ccccCCHHHHHHHhhhHHhcCHHHHHHHHHHHhhhc
Confidence 99998654332222 2334677788899 9999999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCcc
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~ 947 (998)
|||||+||||| ++|.+||.++|++|||+|||| +||+|+.+.
T Consensus 656 DqsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-~YY~Rt~~~ 697 (721)
T PRK07187 656 DQAISLTLFMTDQATTRDLNKAYIQAFKQKCAS-IYYVRVRQD 697 (721)
T ss_pred cccccceeeCCCCCCHHHHHHHHHHHHHcCCCE-EEEEeehhh
Confidence 99999999999 679999999999999999999 788898443
No 55
>PRK07088 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=5e-54 Score=521.16 Aligned_cols=214 Identities=27% Similarity=0.482 Sum_probs=191.6
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||||||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||+|+.
T Consensus 541 ~~~R~IGLGvmGlad~La~lgi~Y~S~eA~~l~~~i~e~i~~~A~~aS~eLAkE~G~yp~f~~S~~~~g~~-~~~~~~-- 617 (764)
T PRK07088 541 DKYRAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWETGKY-FERRGY-- 617 (764)
T ss_pred HhcCccceeHHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhcccc--
Confidence 45789999999999999999999999999999999999999999999999999999999999999999976 443210
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 618 -------------------------------------------------------------------------------- 617 (764)
T PRK07088 618 -------------------------------------------------------------------------------- 617 (764)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
...+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 618 ----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiAPT~StS~i~g~s~giEP~~~ 663 (764)
T PRK07088 618 ----------------------------------NSERWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDPVFK 663 (764)
T ss_pred ----------------------------------ccccHHHHHHHHHHhCccccccccCCCCcchhhhcCCCCcccchhh
Confidence 1237999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|+|+.. |.+.. +.++.||++.+++|+|||||+|+|||+|||++||||
T Consensus 664 ~~~~r~~~-g~~~~------------------------------~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~rQ~~I 712 (764)
T PRK07088 664 RFFMEEKK-GSFTP------------------------------KTAPDLNEENFWYYKEAHTIDQQWSIKACGVRQRHI 712 (764)
T ss_pred hHhhhhcC-Cceee------------------------------cCCcccCHHHHHHhchHHhCCHHHHHHHHHHHcccc
Confidence 99987532 22210 135678888889999999999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
|||||+||||| +++.++|.++|++|||+|||| +||+|+++..
T Consensus 713 DqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yY~R~~s~~ 755 (764)
T PRK07088 713 DQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IYYVRNKSLE 755 (764)
T ss_pred cccccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEecCCcc
Confidence 99999999999 789999999999999999999 5888887765
No 56
>PRK08188 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=7.2e-53 Score=507.25 Aligned_cols=236 Identities=24% Similarity=0.404 Sum_probs=198.1
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..|+||||+|||||+|+++||+|+|+||++|+++||+.|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|...
T Consensus 463 ~~R~IGLGvmGl~~~La~~gi~Y~S~ea~~~~~~ife~i~y~A~~aS~eLAkErG~~f~~f~~S~~~~G~~-f~~y~~~- 540 (714)
T PRK08188 463 ASHAIGLGQMNLHGYLAREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEY-FDKYTQQ- 540 (714)
T ss_pred hcCChhccHhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccChhhccch-hhhcchh-
Confidence 4689999999999999999999999999999999999999999999999999999 699999999999988 5544221
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
+|. |. .+.+.++++.
T Consensus 541 ----~~~--------------------------~~---------------~~~v~~~~~~-------------------- 555 (714)
T PRK08188 541 ----DWQ--------------------------PK---------------TAKVRELFAR-------------------- 555 (714)
T ss_pred ----ccC--------------------------cc---------------hhhhhhhhhh--------------------
Confidence 111 00 0001111100
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
....+| +.++|++|+++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 556 --------------------------~~~~~p--~~~~W~~L~~~i~~~GlRNs~l~AiAPTgSiS~i~~~T~sIePi~s 607 (714)
T PRK08188 556 --------------------------AGITIP--TQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVS 607 (714)
T ss_pred --------------------------cccCCC--cHHhHHHHHHHHHHhCcccceeeeeCCcchHHHHcCCCCCcCcchh
Confidence 001122 4678999999999999999999999999999999999999999999
Q ss_pred ceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|.|+... |++..++|+ ++++.+++|+|||||+|++||+|+|++|||
T Consensus 608 ~v~~R~~~~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~I~~~A~~Qk~ 656 (714)
T PRK08188 608 KIEIRKEGKIGRVYYPAPY-------------------------------MTNDNLEYYQDAYEIGPEKIIDTYAAATQH 656 (714)
T ss_pred hheeeeccccceEEeeCcc-------------------------------cchhhHhHhCcHHhCCHHHHHHHHHHHccc
Confidence 999998643 666655544 455567899999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCcccc
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 949 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~ 949 (998)
||||||+||||| ++|.+||.++|++||++|||| +||+|+++...
T Consensus 657 VDQsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~R~~~~~~ 701 (714)
T PRK08188 657 VDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKT-LYYIRLRQMAL 701 (714)
T ss_pred chhhhcCceecCCCCCHHHHHHHHHHHHHcCCCe-EEEEeeccccc
Confidence 999999999999 679999999999999999999 69999966653
No 57
>PRK07306 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=100.00 E-value=8.6e-53 Score=508.46 Aligned_cols=233 Identities=24% Similarity=0.414 Sum_probs=196.4
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..|+||||+|||||+|++|||+|+|+||++|+++||+.|+|+|+++|++||+|+| +||.|++|+|++|.+ ||.|...+
T Consensus 457 ~~R~IGLGvmGla~~La~~gi~Y~S~eA~~~~~~i~e~i~y~A~~aS~eLA~ErG~~fp~f~~S~~~~G~~-f~~~~~~~ 535 (720)
T PRK07306 457 QAHTIGLGAMGLHSYLAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSY-FDKYVTGD 535 (720)
T ss_pred hcCchhhhHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcChhhccch-hhhhhhcc
Confidence 5689999999999999999999999999999999999999999999999999999 799999999999998 77764321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
|. |. .+.+.++++ |
T Consensus 536 -----~~--------------------------~~---------------~~~v~~~~~------~-------------- 549 (720)
T PRK07306 536 -----FV--------------------------PK---------------SDKVKELFK------G-------------- 549 (720)
T ss_pred -----cC--------------------------cc---------------hhhHHHhhh------c--------------
Confidence 00 10 001111110 0
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
..+| ..++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus 550 ----------------------------~~~p--~~~~W~~Lr~~i~~~GlRNs~l~AiAPTgSiS~i~g~S~gIePi~s 599 (720)
T PRK07306 550 ----------------------------IFIP--TAADWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQ 599 (720)
T ss_pred ----------------------------cCCC--chhhHHHHHHHHHHhCcccccceeeCCccHHHHHhCCCCccccchh
Confidence 0122 4678999999999999999999999999999999999999999999
Q ss_pred ceEEEEcc-ccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVL-SGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~-~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|+|+.. .|++. +..+.||++.+++|+|||||+|++||+|||++|||
T Consensus 600 ~v~~r~~~~~g~~~-------------------------------~~~p~l~~~~~~~f~tA~ei~~~~~I~~~A~~Qk~ 648 (720)
T PRK07306 600 RIEERQEKKIGKIY-------------------------------YPAPGLSTETIPYYTSAYDMDMRKVIDVYAAATEH 648 (720)
T ss_pred hHhhhhhhcCCcee-------------------------------ccCCCCchhHHHHhCcHHhCCHHHHHHHHHHHhcc
Confidence 99988632 13322 23567888889999999999999999999999999
Q ss_pred ccccccceeecC-CC--------------CHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 905 IDQSQSLNIYMA-EI--------------NYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 905 iDqsiS~tl~~~-~~--------------~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
||||||+||||| ++ +.+||.++|++|||+|||| +||+|+.+..
T Consensus 649 VDQsiS~tl~~~~~~~~~~~~~~~~~~~~t~~~l~~~~~~Awk~GlKt-~YY~Rt~~~~ 706 (720)
T PRK07306 649 VDQGLSLTLFMRSTLPKGLYEWKDRTNKMTTRDLSILRNYAFNKGIKS-IYYIRTFTDD 706 (720)
T ss_pred chhhhcCccccCCccccccccccccccCCCHHHHHHHHHHHHHcCCCe-EEEEeecccc
Confidence 999999999998 43 7899999999999999999 5998986654
No 58
>PRK12364 ribonucleotide-diphosphate reductase subunit alpha; Provisional
Probab=100.00 E-value=9.9e-53 Score=517.20 Aligned_cols=213 Identities=29% Similarity=0.499 Sum_probs=191.9
Q ss_pred ccCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCC
Q psy1689 585 RRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT 664 (998)
Q Consensus 585 ~~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~ 664 (998)
+...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+ ||.|+.
T Consensus 618 n~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~S~~~~g~~-~~~~~~- 695 (842)
T PRK12364 618 NKRYRSIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEGSDWQTGAY-FRKRGY- 695 (842)
T ss_pred HHhccccccchHHHHHHHHHCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccch-hhccCc-
Confidence 346789999999999999999999999999999999999999999999999999999999999999999986 443210
Q ss_pred CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689 665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI 744 (998)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 744 (998)
T Consensus 696 -------------------------------------------------------------------------------- 695 (842)
T PRK12364 696 -------------------------------------------------------------------------------- 695 (842)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccc
Q psy1689 745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 824 (998)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~ 824 (998)
...+|++|+++|++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 696 -----------------------------------~~~~W~~L~~~i~~~GlRNs~l~AiaPT~S~S~i~g~s~gieP~~ 740 (842)
T PRK12364 696 -----------------------------------TSEEWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDPVM 740 (842)
T ss_pred -----------------------------------chhhHHHHHHHHHHhCcchhheeccCCcHHHHHHcCCCCccCcch
Confidence 124899999999999999999999999999999999999999999
Q ss_pred cceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCcc--ccCCCCChhhHhhhcccCCCChHhHHHHHHHhC
Q psy1689 825 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902 (998)
Q Consensus 825 a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv--~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q 902 (998)
+++|+++.. |++ +.++.+|++.+++|+|||||+|++||+|||++|
T Consensus 741 ~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~y~tA~ei~~~~~I~~~A~~Q 787 (842)
T PRK12364 741 KRYFLEEKK---------------------------------GALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGVRQ 787 (842)
T ss_pred HhHHHHhhc---------------------------------CCcccccCccCCHHHHHHhccHhcCCHHHHHHHHHHHh
Confidence 988765421 222 236788999999999999999999999999999
Q ss_pred CcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 903 AFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 903 ~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
||||||||+||||| ++|.++|.++|++|||+|||| +||+|+++..
T Consensus 788 ~~IDqsiS~nl~~~~~~t~~~l~~~y~~Awk~GlKt-~yy~R~~~~~ 833 (842)
T PRK12364 788 RHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSKSLE 833 (842)
T ss_pred ccchhhccCceecCCCCCHHHHHHHHHHHHHcCCCE-EEEEccCCcc
Confidence 99999999999999 689999999999999999999 6888987764
No 59
>PRK06948 ribonucleotide reductase-like protein; Provisional
Probab=100.00 E-value=4.3e-52 Score=495.95 Aligned_cols=230 Identities=23% Similarity=0.301 Sum_probs=198.8
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++|||||+|+||++|+++||++|+++|+++|++||+|+|+||.|++|+|.+|.+.
T Consensus 360 ~~~R~IGLGvmGlad~L~~lgi~Y~S~ea~~~~~~i~~~i~~~A~~aS~eLA~ErG~fp~f~~s~~~~~~~~-------- 431 (595)
T PRK06948 360 RQKRRIGVGVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCDPAAHLDALRA-------- 431 (595)
T ss_pred hcCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcChhhccccc--------
Confidence 367999999999999999999999999999999999999999999999999999999999999998765320
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 432 -------------------------------------------------------------------------------- 431 (595)
T PRK06948 432 -------------------------------------------------------------------------------- 431 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhc--CCCcccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL--GNNESFEPY 823 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~--g~s~giEP~ 823 (998)
....|.+|+++|++||+|||++||||||||||+|+ |||+||||+
T Consensus 432 ----------------------------------~~~~~~~l~~~i~~~G~RNs~ltaIAPTgSiS~i~~~~~S~GieP~ 477 (595)
T PRK06948 432 ----------------------------------GPPLPHAVCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPA 477 (595)
T ss_pred ----------------------------------cccCcHHHHHHHHHhCcchhheeeeCCcHHHHHHhcCCCCCCcccc
Confidence 00136899999999999999999999999999998 489999999
Q ss_pred ccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCC
Q psy1689 824 TSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903 (998)
Q Consensus 824 ~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~ 903 (998)
|+++|+|++..|++..... +.+.... ..++.+...|.+++++|+||+||+|++||+|||++||
T Consensus 478 fa~~y~R~~~~g~~~~~~~-----------~~~~~~~------~~~~~~~~~~~~~~~~f~tA~di~~~~~i~~~A~~Qk 540 (595)
T PRK06948 478 RAWIEHRPVRAGAGGARGM-----------RAENHAY------RLFRSLRGERAALPDYFVTAADVAPADHLAMRAALQP 540 (595)
T ss_pred eeeeEEEEeccCCCcccce-----------eeechhh------hhccccCCCchhHHhhcCcHhhCCHHHHHHHHHHHcc
Confidence 9999999999887542111 1111000 1123455567788999999999999999999999999
Q ss_pred cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhh
Q psy1689 904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954 (998)
Q Consensus 904 ~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~ 954 (998)
|||||||+||||| +++.+||.++|++||++||||+||||.+++..|++.+.
T Consensus 541 ~vDqsiS~Tvn~~~~~t~~dv~~~y~~Aw~~GlKgit~~R~~~~~~~vl~~~ 592 (595)
T PRK06948 541 YVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLKGITIFRPDPALDAVPSDD 592 (595)
T ss_pred cchhhccCeEeeCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCcccCCcccCC
Confidence 9999999999999 67999999999999999999999999888888888764
No 60
>cd02888 RNR_II_dimer Class II ribonucleotide reductase, dimeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Many, bu
Probab=100.00 E-value=2.2e-47 Score=445.26 Aligned_cols=173 Identities=27% Similarity=0.407 Sum_probs=163.8
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
.+|+||||+|||||+|+++|++|+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+++|
T Consensus 291 ~~R~iGlG~~Glad~L~~~gi~y~S~ea~~~~~~i~~~i~~~a~~aS~~LA~e~G~fp~f~~s~~~~g~~~~~------- 363 (464)
T cd02888 291 ATRRIGLGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDASRYLMLKVIVN------- 363 (464)
T ss_pred ccCceeecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCcCcChhhcccchhc-------
Confidence 4689999999999999999999999999999999999999999999999999999999999999998876421
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
T Consensus 364 -------------------------------------------------------------------------------- 363 (464)
T cd02888 364 -------------------------------------------------------------------------------- 363 (464)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
..++|++|++++++||+|||+++|||||||||+|+|+|+||||+|
T Consensus 364 ---------------------------------~~~~w~~l~~~i~~~G~RNs~l~aiAPTgs~S~i~g~s~gieP~~-- 408 (464)
T cd02888 364 ---------------------------------AKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPIF-- 408 (464)
T ss_pred ---------------------------------chhcHHHHHHHHHHhCcchhceeeeCCcHHHHHHhCCCCCcCCCC--
Confidence 124699999999999999999999999999999999999999999
Q ss_pred eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 906 (998)
Q Consensus 827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD 906 (998)
+|++||+|||++|||||
T Consensus 409 ---------------------------------------------------------------~~~~~i~~~a~~Q~~iD 425 (464)
T cd02888 409 ---------------------------------------------------------------SPEDHVRMQAALQPWVD 425 (464)
T ss_pred ---------------------------------------------------------------CHHHHHHHHHHHhccch
Confidence 89999999999999999
Q ss_pred ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q psy1689 907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT 944 (998)
Q Consensus 907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~ 944 (998)
||||+|||+| ++|++||.++|++||++||||+||||++
T Consensus 426 qsiS~tin~~~~~t~~d~~~~y~~aw~~G~K~~t~yR~g 464 (464)
T cd02888 426 GAISKTINLPNDATVEDVEAVYLLAWKLGLKGITVYRDG 464 (464)
T ss_pred hhhcceeecCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9999999999 8899999999999999999999999753
No 61
>COG0209 NrdA Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-46 Score=452.32 Aligned_cols=225 Identities=38% Similarity=0.606 Sum_probs=205.7
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|.||||+|||||+|+++||||+|+||++|++++|++|+++|+++|++||+|+|+|+.|.+|.|++|.++.|.+..
T Consensus 421 ~~~R~iGlGvmgl~~~La~~~i~y~S~ea~~~~~~~~e~i~~~a~~aS~elA~e~G~~~~f~~s~~~~g~~~~~~~~~-- 498 (651)
T COG0209 421 AESRAIGLGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRL-- 498 (651)
T ss_pred hhcCccccchhhHHHHHHhCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccccchhhh--
Confidence 357889999999999999999999999999999999999999999999999999999988999999999987543100
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 499 -------------------------------------------------------------------------------- 498 (651)
T COG0209 499 -------------------------------------------------------------------------------- 498 (651)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
. | . . ++|+.|++++++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 499 --------------------~-~-------~---~-~~w~~l~~~v~~~G~rns~~~aiaPtgsiS~i~~~t~~IeP~~~ 546 (651)
T COG0209 499 --------------------F-G-------I---T-EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFA 546 (651)
T ss_pred --------------------c-c-------c---c-ccHHHHHHHHHHhCcccccceeeCCccchhHhhCCCCCcCcChh
Confidence 0 0 0 1 68999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|.|....|.+.++++++.+++... |..|+||+|.+||+|+|++|+||
T Consensus 547 ~~~~r~~~~g~~~~~~~~l~~~~~~~-------------------------------~~~a~~i~~~~~i~~~a~~q~~i 595 (651)
T COG0209 547 LVYFRETKGGRFYYVVPPLFEDLLAY-------------------------------YGLAYEIDPLWHIDMQAAAQRWI 595 (651)
T ss_pred heeeEecccceEEEeCcHHHHHHHHh-------------------------------hhhhhccChHHHHHHHHHhhccc
Confidence 99999888899999999988766533 33499999999999999999999
Q ss_pred cccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhh
Q psy1689 906 DQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956 (998)
Q Consensus 906 DqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~ 956 (998)
|||||+|||+| +.+.+|+.++|++||++|||| |||+|+++.++++++..+
T Consensus 596 Dq~iS~tl~~~~~~~~~d~~~~~~~Aw~~g~K~-~yY~~~~~~~~~~~~~~~ 646 (651)
T COG0209 596 DQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD 646 (651)
T ss_pred ccceeeeecCCCCCCHHHHHHHHHHHHHcCCce-EEEecCcccccccccccc
Confidence 99999999999 889999999999999999999 999999999999888765
No 62
>cd01679 RNR_I Class I ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and many viruses, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophages, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class I RNR is oxygen-dependent and can be subdivided into classes Ia (eukaryotes, prokaryotes, viruses and phages) and Ib (
Probab=100.00 E-value=6e-46 Score=432.36 Aligned_cols=175 Identities=55% Similarity=0.840 Sum_probs=167.3
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
.+|+||||+|||||+|+++|++|+|+||++++++|||.|+++|+++|++||+|+| |
T Consensus 285 ~~R~iGlGv~Glad~L~~~gi~y~s~ea~~~~~~i~e~i~~~a~~aS~~LA~e~G------------G------------ 340 (460)
T cd01679 285 RHRAIGLGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG------------G------------ 340 (460)
T ss_pred hcCcccccchHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------C------------
Confidence 5789999999999999999999999999999999999999999999999999988 2
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
T Consensus 341 -------------------------------------------------------------------------------- 340 (460)
T cd01679 341 -------------------------------------------------------------------------------- 340 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
+|||+++|||||||||+|+|+|+||||+|++
T Consensus 341 -------------------------------------------------~RNs~l~aiaPTgs~S~l~g~S~gieP~~a~ 371 (460)
T cd01679 341 -------------------------------------------------LRNSLLLAIAPTASISQILGATPSIEPITSN 371 (460)
T ss_pred -------------------------------------------------ccccceeeeCCccHHHHhcCCCCCcCccccc
Confidence 5899999999999999999999999999999
Q ss_pred eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 906 (998)
Q Consensus 827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD 906 (998)
+|+|++.+|+|.++||+|.+.|.+.| +|+||+||+|++||+|||++|||||
T Consensus 372 ~~~R~~~~g~~~~~n~~l~~~~~~~g-----------------------------~f~ta~di~~~~~i~~~a~~Q~~vD 422 (460)
T cd01679 372 IYVRRVLSGEFPVVNPHLEKDLWEYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHID 422 (460)
T ss_pred eeEEEccCCcEEEECHHHHHHHHHcC-----------------------------ccccHHhCCHHHHHHHHHHHccCcc
Confidence 99999999999999999998876543 7999999999999999999999999
Q ss_pred ccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecC
Q psy1689 907 QSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRT 944 (998)
Q Consensus 907 qsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~ 944 (998)
||||+|||+| +++.+||.++|++|||+||||+ ||+|+
T Consensus 423 qsiS~t~~~~~~~~~~~i~~~~~~a~~~GlK~~-YY~r~ 460 (460)
T cd01679 423 QGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460 (460)
T ss_pred cccCceeecCCCCCHHHHHHHHHHHHHcCCCeE-EEeCC
Confidence 9999999999 7799999999999999999996 99986
No 63
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=100.00 E-value=3.2e-34 Score=330.86 Aligned_cols=290 Identities=18% Similarity=0.177 Sum_probs=252.5
Q ss_pred hhHHHHHHHHh-hhccccccccceEEEecCCc-----ccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCce
Q psy1689 73 EKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWH-----GDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQW 146 (998)
Q Consensus 73 ~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wH-----pDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W 146 (998)
.+|-+.+.... ...++|.|+++.+++++.|| +|+++||++|.+.+.+..+....+++|.+++.|+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~lg~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~sv~~~~~~~~~------- 171 (401)
T cd00576 99 VEAADAFNLALKEVGQGNGRTGAATGFIGGVHKGKGDKISQEFLNLALANGGEGIPLNFPNLSVRVSSDKPGI------- 171 (401)
T ss_pred HHHHHHHHHHHhhhhhcCCCCceEEEEECCCCccccCHHHHHHHHHHHhcCCCCccCCCCcEEEEeecCCCCc-------
Confidence 33334333332 33455789999999999999 999999999988776666678889999987776532
Q ss_pred eeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCC
Q psy1689 147 SLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL 226 (998)
Q Consensus 147 ~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNp 226 (998)
.++++++|++++++++++|.|+++|.
T Consensus 172 ----------------------------------~~~~~~l~~~~~~~~~~~g~P~~~n~-------------------- 197 (401)
T cd00576 172 ----------------------------------LVKAVELKQLIAEEARKTGSPGIFND-------------------- 197 (401)
T ss_pred ----------------------------------cccHHHHHHHHHHHHHHhCCCCEEEc--------------------
Confidence 27889999999999999999999988
Q ss_pred ccceecccCCCCcceeeecccccccccCCC---CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 227 CTEIVEYTSKDEVAVCNLASIALNMYINPA---DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 227 C~EI~l~~~~~~~~~CNL~SINL~~~v~~~---~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
.+|||+||||+++++.. ...++++.|++++++++++||++++...++.|++.+...++|++|||
T Consensus 198 -------------~~~~l~siNL~~~~~~~~~~~~~~~~~~l~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~r~~giG 264 (401)
T cd00576 198 -------------ELCNLVSLNLARIMEKAINGSMDVVLEELEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGLG 264 (401)
T ss_pred -------------cccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHhCccCCcccccc
Confidence 25999999999998741 12466899999999999999999999999999999888999999999
Q ss_pred cchHHHHHHHcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHH
Q psy1689 304 VQGLADLFIQMRLPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~ 382 (998)
++|||+++..+|++|. |++|.+++.+|++.|+..+.++|.+
T Consensus 265 ~~Gla~~~~~l~~~~~~~~~a~~~~~~i~~~~~~~~~~~s~~-------------------------------------- 306 (401)
T cd00576 265 IAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKATNE-------------------------------------- 306 (401)
T ss_pred HhHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHhhhh--------------------------------------
Confidence 9999999999999999 9999999999999999999988854
Q ss_pred HHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcC
Q psy1689 383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNN 462 (998)
Q Consensus 383 Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~ 462 (998)
.||+.+++++|++|+|.+.+.|+||+|.++++|.
T Consensus 307 ---------~~~~~~~~~~P~~s~~~~~~~s~gi~p~~~~~~~------------------------------------- 340 (401)
T cd00576 307 ---------RGFNFLLGLSPSESNSSGAPATNGVSPSRGXIAI------------------------------------- 340 (401)
T ss_pred ---------cCCccccceeecccccCCCCCCCCcCCccccccc-------------------------------------
Confidence 4688899999999999999999999999999887
Q ss_pred CcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCC-C-HHHHHHHHHHHHHcCCceEEEE
Q psy1689 463 GSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI-N-YAKMSSMHFHGWKLGLKTGMYY 537 (998)
Q Consensus 463 Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~-t-~~~i~~~~~~Awk~GlKt~~yY 537 (998)
.++.+++|.++|++++.+|+|+||++|+|+++++. . .++|.+++..||+.|+|++++|
T Consensus 341 -----------------~~~~~~~~~~~i~~~a~~~~~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n 400 (401)
T cd00576 341 -----------------VLNGDIGPEESLASVAILQFYADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN 400 (401)
T ss_pred -----------------cccccCCHHHHHHHhhcCcccccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence 22447899999999999999999999999999864 4 8999999999999999998776
No 64
>cd01676 RNR_II_monomer Class II ribonucleotide reductase, monomeric form. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). Class II RNRs are found in bacteria that can live under both aerobic and anaerobic conditions. Man
Probab=100.00 E-value=5.6e-35 Score=350.47 Aligned_cols=151 Identities=13% Similarity=0.034 Sum_probs=131.1
Q ss_pred cccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCC
Q psy1689 797 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 876 (998)
Q Consensus 797 RNs~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~ 876 (998)
||+++||||||||||+|+|||+||||+||++|+|+++.+ .|+++.+.|++.|++.++.. .. +.+.+..+|
T Consensus 466 rn~~lTTIAPTGTiSliaG~SsGIEP~fA~~y~Rrv~~~----~~~pl~~~l~~~G~~~~~~~----~~--~~~~l~~iP 535 (658)
T cd01676 466 LSIKVTCVKPSGTISLLAGASPGMHYPLGKYLIRRIRFQ----KHDPLAPALIAAGYHVEPDI----YD--PTSVLVEFP 535 (658)
T ss_pred cccceEEECCCchHHHhcCCCCCcChhHhHHHHhhhhcc----cCcHHHHHHHHcCCCcHHHH----hc--cCCCcccCC
Confidence 456699999999999999999999999999999999854 58888999999999976532 22 335788999
Q ss_pred hhhHhhhcccCCCChHhHHHHHHHhCC-cccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCc-cc--cch
Q psy1689 877 QKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKP-AA--NAI 951 (998)
Q Consensus 877 ~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~-~~--~~~ 951 (998)
++.+.+|+||+||+|.+||+|||++|+ ||||+||+|||+| +++.+||.++|.++| .||||+|+|+|.+. .+ |+.
T Consensus 536 ~~~~~~f~Ta~dIs~~~hl~~qA~~Q~y~vD~avSkTIn~p~~~~~~dV~~~l~~~~-~~~KG~t~l~~~d~~~~~~q~P 614 (658)
T cd01676 536 VKAGNADRTANTVSIVEQLSLLAFLQTYWADNQVSNTISFDPSPEGPALIQALQQFQ-YQYKSVSLLPRFDTTKNAAQMP 614 (658)
T ss_pred HHHHhhcCCHHhCCHHHHHHHHHHhCcCCeeecccceEeeCCCCCHHHHHHHHHHhh-cCCeEEEEeecCCcccCcccCC
Confidence 999999999999999999999999999 6999999999998 779999999999995 49999999986643 33 666
Q ss_pred hhhhhhh
Q psy1689 952 QFTIDKT 958 (998)
Q Consensus 952 ~~~~~~~ 958 (998)
...+++.
T Consensus 615 ~E~I~ke 621 (658)
T cd01676 615 FEPITKE 621 (658)
T ss_pred ccccCHH
Confidence 6777753
No 65
>TIGR02505 RTPR ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (RNR) related to the characterized species from Lactococcus leichmannii. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. Thus model identifies NrdJ enzymes only in cyanobacteria, lactococcus and certain bacteriophage. A separate model (TIGR02504) identifies a larger group of divergent B12-dependent RNR's.
Probab=99.90 E-value=3.2e-24 Score=258.48 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=98.6
Q ss_pred cccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCcccc----C
Q psy1689 797 RNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD----I 872 (998)
Q Consensus 797 RNs~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~----i 872 (998)
||+++|+||||||+|+|+|||+||||+||++|+|++. ..+|++|.+.|++.|+..+....+ ...+|.... +
T Consensus 497 r~~~~TTIaPTGTiS~laG~S~GIeP~~A~~y~Rri~----~~~ndpl~~~l~~~Gy~~~p~~~~-~~~~~~~~~~~~~~ 571 (713)
T TIGR02505 497 EPIKHTTVKPSGTISKLAGASEGIHPPYGAYLIRRIT----FSKSDPLAPALKACGYTVEADQYD-KNEQGRLPPCKTTL 571 (713)
T ss_pred CccceeeeCCccchHHhcCCCCccCcchhhheeeeee----eecCcHHHHHHHHcCCCCCccccc-ccccccccccccee
Confidence 3445889999999999999999999999999999994 359999999999999987522111 000010000 1
Q ss_pred CCCChhh--H--hhhcccC--CCChHhHHHHHHHhCC-cccccccceeecCCCCHHHHHHHHHHHHHcC
Q psy1689 873 EGIPQKL--K--DLYKTVW--EIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLG 934 (998)
Q Consensus 873 ~~l~~~~--k--~~f~tA~--ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~G 934 (998)
-.+|.+. . .-..+|. ||++.+|++|||.+|+ |+|+++|+|||+|.-..++|..++.++|+.-
T Consensus 572 ve~p~~~~~~~~~~~~~a~~~diS~~~ql~~qa~~Q~~~~DnavS~Tin~~~~e~e~v~~~~~~~~~~~ 640 (713)
T TIGR02505 572 VEFPIKAVGADNPNIAEVGINTVSAAAQFAFYAFLQTYWSDNNVSCTITFDPSEGEQVESALRQYRDNS 640 (713)
T ss_pred EEeeecccccCCCCCcccccccCCHHHHHHHHHHHhHhhhhccCceeEecChHHHHHHHHHHHHHHHhh
Confidence 0112110 0 1122555 9999999999999999 8999999999998334999999999999843
No 66
>cd00576 RNR_PFL Ribonucleotide reductase and Pyruvate formate lyase. Ribonucleotide reductase (RNR) and pyruvate formate lyase (PFL) are believed to have diverged from a common ancestor. They have a structurally similar ten-stranded alpha-beta barrel domain that hosts the active site, and are radical enzymes. RNRs are found in all organisms and provide the only mechanism by which nucleotides are converted to deoxynucleotides. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs use a diiron-tyrosyl radical while Class II RNRs use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. PFL, an essential enzyme in anaerobic bacteria, catalyzes the conversion of pyruvate and CoA to acteylCoA and formate in a mechanism that uses a glycyl radical.
Probab=99.67 E-value=1.8e-16 Score=183.27 Aligned_cols=90 Identities=12% Similarity=0.022 Sum_probs=81.2
Q ss_pred ccceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCCh
Q psy1689 798 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 877 (998)
Q Consensus 798 Ns~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~ 877 (998)
|+++++++||+|+|.+.++|+||+|.++++|.
T Consensus 309 ~~~~~~~~P~~s~~~~~~~s~gi~p~~~~~~~------------------------------------------------ 340 (401)
T cd00576 309 FNFLLGLSPSESNSSGAPATNGVSPSRGXIAI------------------------------------------------ 340 (401)
T ss_pred CccccceeecccccCCCCCCCCcCCccccccc------------------------------------------------
Confidence 34478899999999999999999999999987
Q ss_pred hhHhhhcccCCCChHhHHHHHHHhCCcccccccceeecC-CCC-HHHHHHHHHHHHHcCCcEEEEE
Q psy1689 878 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EIN-YAKMSSMHFHGWKLGLKTGMYY 941 (998)
Q Consensus 878 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~~~-~~~i~~~y~~Aw~~GlK~~~yY 941 (998)
+|+.+++|.++|+++|.+|+|+|||+|+|++++ +.+ .++|.++|..||+.|+|++++|
T Consensus 341 ------~~~~~~~~~~~i~~~a~~~~~~~~g~s~~i~~~~~~~~~~~l~~l~~~~~~~g~~~i~~n 400 (401)
T cd00576 341 ------VLNGDIGPEESLASVAILQFYADNGISDTITIPDSATNLDQLLAVIDGAAAIKTTHVRVN 400 (401)
T ss_pred ------cccccCCHHHHHHHhhcCcccccCCeeeeeecCCccccHHHHHHHHHHHHHcCCCeEEec
Confidence 335589999999999999999999999999998 555 9999999999999999998876
No 67
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=97.57 E-value=0.0027 Score=77.28 Aligned_cols=254 Identities=20% Similarity=0.262 Sum_probs=152.1
Q ss_pred cHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceec-----------ccCCCCcceeeeccccccc
Q psy1689 183 PARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVE-----------YTSKDEVAVCNLASIALNM 251 (998)
Q Consensus 183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l-----------~~~~~~~~~CNL~SINL~~ 251 (998)
+-.++++.+++++.++|.|+++|.+.. ... .|.+. -=|+-..+ ...+.-+++..+.+|||++
T Consensus 227 ~~~d~~~~~~~~~~k~~~p~f~n~~~~--~~~---~~~~~--~mcCR~~l~~~~~~~~~~~~~~~~~~Gs~~vvTiNLpR 299 (555)
T cd01675 227 PNYDLKELAFECAAKRGYPYFLNFDNS--DNV---PGDVR--AMGCRLFLDKNELKRGGGLEGSGDGTGNIGVVTINLPR 299 (555)
T ss_pred CchHHHHHHHHHHHHHCCCCccccccc--ccc---CCCcc--cccCccccchhhhcccCCCCccCcccceeeeEEechHH
Confidence 456889999999999999999877652 111 12111 12331110 1122335667777999999
Q ss_pred ccCCCCCCCC--hhHHHHHHHHHHHHHHHh-------hhcCCCcHHHHHHHH------hhcCCCccccchHHHHHHHc-C
Q psy1689 252 YINPADKTYN--FTKLKDVAKIVTKNLNKI-------IDVNFYPVEEARNSN------MRHRPIGIGVQGLADLFIQM-R 315 (998)
Q Consensus 252 ~v~~~~~~fD--~~~l~~~v~~avr~LD~v-------Id~~~~p~~e~~~~~------~~~R~IGLGv~GLad~L~~l-g 315 (998)
..-+..+..+ |+.|.+.+.++.+.|+.= +....+|+-..-... ...-..-||+.||++++..+ |
T Consensus 300 ia~~a~~d~~~F~~~L~~~l~l~~~~l~~r~~~l~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~tiG~iGL~Ea~~~l~g 379 (555)
T cd01675 300 IAYEARGDEEKFFELLDEYLELAKDALEIRRKRLKEALARGLPPLYQEGLGGGKLLFILKRHTLTIGFIGLNEAAEALTG 379 (555)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHcCcccccceecCCCeEEeEEEehHHHHHHHhcC
Confidence 8753211111 446666677776554332 222334443332222 33455679999999988655 4
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCC
Q psy1689 316 LPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVR 393 (998)
Q Consensus 316 l~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~R 393 (998)
-..+ +++|.+|+.+|.++|...+.+.+ +|.|- |. .+. +|....-=.-.+.+-+++|-
T Consensus 380 ~~~~~~~~~~~f~~~il~~m~~~~~~~~----~e~g~~~~-l~~---------------tPaEs~~~rfa~~D~~~~g~- 438 (555)
T cd01675 380 KGIGESEEAREFGIRILEHIRERADEFK----EETGLLYS-VEA---------------TPAESLAYRFAKKDRKKYGD- 438 (555)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceE-EEE---------------cccchHHHHHHHHHHHHcCc-
Confidence 4444 99999999999999998887666 44452 11 111 12100000112445556662
Q ss_pred cccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCCh
Q psy1689 394 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473 (998)
Q Consensus 394 Ns~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~ 473 (998)
.+-|.+. .|++.|.|. +|
T Consensus 439 --------------i~~g~~d--~~yyTNS~h---------------------------------------------ip- 456 (555)
T cd01675 439 --------------IIPGVTD--KPYYTNSFH---------------------------------------------VP- 456 (555)
T ss_pred --------------cCCCCCC--CCCCCCCEE---------------------------------------------ee-
Confidence 0122221 122222221 11
Q ss_pred hhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCce
Q psy1689 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKT 533 (998)
Q Consensus 474 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlKt 533 (998)
...++++.+.|+..+..|++.+.+...-+++++ .+++.+.++...|.+.|+.-
T Consensus 457 -------v~~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~y 511 (555)
T cd01675 457 -------VYEDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVIY 511 (555)
T ss_pred -------CCCCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCce
Confidence 123477888999999999999999999999996 47889999999999987554
No 68
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=97.26 E-value=0.014 Score=71.46 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceecc--------cCCCCcceeeecccccccccCCCC
Q psy1689 186 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEY--------TSKDEVAVCNLASIALNMYINPAD 257 (998)
Q Consensus 186 ~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~--------~~~~~~~~CNL~SINL~~~v~~~~ 257 (998)
+|++.+++++.++|.|+++|.|+.-.. .|... +-=|+-..+- ....-+++..+.+|||++.--+..
T Consensus 233 d~~~~a~~~~ak~~~P~f~n~~~~~~~-----~~~~~-~~MgCR~~l~~~~~~~~~~~~~~~Gn~gvvTiNLpRiA~~a~ 306 (579)
T TIGR02487 233 DLFELAFECAAKRGYPYFLNLDPEDNV-----KEDVR-YPMGCRTFLSPNENGDGEESYIGRGNIGVTSINLPRIAYKSR 306 (579)
T ss_pred HHHHHHHHHHHHhCCCCcccchhhhcc-----CCCee-ccCCCcccccceecCCCCccCcccceeeeEEcchHHHHHHhC
Confidence 799999999999999999886543111 11111 1112221110 011223445566999999764311
Q ss_pred CCCC--hhHHHHHHHHHHHHHHHhhh------cCCCcHHHHHHH-------------HhhcCCCccccchHHHHHH-HcC
Q psy1689 258 KTYN--FTKLKDVAKIVTKNLNKIID------VNFYPVEEARNS-------------NMRHRPIGIGVQGLADLFI-QMR 315 (998)
Q Consensus 258 ~~fD--~~~l~~~v~~avr~LD~vId------~~~~p~~e~~~~-------------~~~~R~IGLGv~GLad~L~-~lg 315 (998)
+..+ |+.|.+.+.++...|+.=.+ ...+|.--.... ..+.-.+-||+.||++++. .+|
T Consensus 307 ~d~~~F~~~L~~~l~l~~~~L~~r~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~~~siG~iGL~Ea~~~l~G 386 (579)
T TIGR02487 307 GDEEEFFEELDEYLEIAKEALEIRREYLKKMLAKDLPPMYSQGGWDGGNLLDESVEEILKSGTNSIGFIGLNEALVALTG 386 (579)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCHHHHhccccccccccchHHHHhhcCeeeeehhhHHHHHHHhcC
Confidence 1111 45677777777776643222 123443321100 0233477899999999887 688
Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCC
Q psy1689 316 LP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVR 393 (998)
Q Consensus 316 l~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~R 393 (998)
.. ..|++|.+|+.+|.++|...+.+.+. |.|. |. .+ .+|....-=.-.+.+-+++|..
T Consensus 387 ~~~~~~~~a~~f~~~Il~~m~~~~~~~~~----e~g~~~~-l~---------------~TPAEs~~~rfa~~D~~~fg~i 446 (579)
T TIGR02487 387 KHLHEEEEARELAIRILEFIRDKADEFKK----ETGLNYS-VY---------------ATPAESLCGRFAKKDREEFGEI 446 (579)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHCCceE-EE---------------ECCcchHHHHHHHHHHHHcCCC
Confidence 77 47899999999999999988877663 3442 11 11 1121100001123344556631
Q ss_pred cccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCCh
Q psy1689 394 NSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473 (998)
Q Consensus 394 Ns~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~ 473 (998)
.|.+.- |++.|.|- +|
T Consensus 447 ----------------~gv~d~--~yYTNS~h---------------------------------------------ip- 462 (579)
T TIGR02487 447 ----------------PGVTDK--PYYTNSFH---------------------------------------------VP- 462 (579)
T ss_pred ----------------CCCCCC--CcCCCCEe---------------------------------------------eC-
Confidence 122211 33333221 11
Q ss_pred hhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHHcCCc
Q psy1689 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLK 532 (998)
Q Consensus 474 ~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk~GlK 532 (998)
.-.++++.+.|+..+..|++...+...-+++++ .+++.+.++...|.+.|+.
T Consensus 463 -------v~~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~i~ 516 (579)
T TIGR02487 463 -------VYEDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNGIG 516 (579)
T ss_pred -------CCCCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCc
Confidence 123578889999999999999999999999985 4788999999999998743
No 69
>PRK10977 hypothetical protein; Provisional
Probab=97.26 E-value=0.0075 Score=72.31 Aligned_cols=257 Identities=14% Similarity=0.156 Sum_probs=155.8
Q ss_pred eeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCC-CCCCCceeecCCccceecccCCCCcceee--ecccccccccCCC
Q psy1689 180 RQVPARKLWFAILDSQIETGTPYMLYKDACNRKSN-QQNLGTIKCSNLCTEIVEYTSKDEVAVCN--LASIALNMYINPA 256 (998)
Q Consensus 180 k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~-~~~~g~I~~sNpC~EI~l~~~~~~~~~CN--L~SINL~~~v~~~ 256 (998)
..++..+++++.++++..+|.|.++|.+. +.... ....|.+ =|.|-+ + .+.|| +.+|||++.-...
T Consensus 187 ~~~tp~d~l~~A~e~~~~~g~P~f~Nd~~-~i~~~~a~~ygi~----gC~~~l-~-----~g~GsigvVTINLpRIA~~a 255 (509)
T PRK10977 187 PEITPDDLLLLAAKNICECSKPHIANHPV-HDKDFTKGGYGIV----SCYNSL-P-----LGGGAYTLVRLNLKEVAKRA 255 (509)
T ss_pred CCCCCHHHHHHHHHHHhccCCCceecCHh-HHHhhcccCCcee----eeeccC-C-----CCcCCceeEEeeHHHHHHHC
Confidence 34456999999999999999999988553 32222 1234433 366543 2 23455 4599999875431
Q ss_pred CC--CCChhHHHHHHHHHHHHHHH----hhhc-CCCcHHHHHH-HH-hhcCCC-ccccchHHHHHHHc----CCC--CC-
Q psy1689 257 DK--TYNFTKLKDVAKIVTKNLNK----IIDV-NFYPVEEARN-SN-MRHRPI-GIGVQGLADLFIQM----RLP--FD- 319 (998)
Q Consensus 257 ~~--~fD~~~l~~~v~~avr~LD~----vId~-~~~p~~e~~~-~~-~~~R~I-GLGv~GLad~L~~l----gl~--Y~- 319 (998)
.. .|=.+.|.+.+.++...|+. +.+. +.||++-..+ .. ...|-. -+|+.|||.++..+ |.. |+
T Consensus 256 ~~~e~F~~~~L~~~~~l~~e~l~~R~~~l~e~~~~~~~~fL~~eg~~~~d~f~~tiGiiGLaEav~~l~g~~g~~~~~g~ 335 (509)
T PRK10977 256 ESVDDFFDNVLPHYCQQMIEIIDARIRFLVEESNFFESSFLVKEGLIDPERFTPMFGIYGLAEAVNLLLEKEGLAARYGK 335 (509)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchHhhcCCccccccccCccHhHHHHHHHHHhcCCCcccCcCC
Confidence 11 12122566677777777655 3332 3466332111 10 122222 59999999988877 343 43
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCccccc
Q psy1689 320 CNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLI 398 (998)
Q Consensus 320 S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~lt 398 (998)
|++|.+|..+|.++|...+. +.|. | .+. |.| ++ ..+.|+
T Consensus 336 seea~~l~~~Il~~m~~~~~--------e~~~~Y-g~~------~Rf-----------------~~--~~q~G~------ 375 (509)
T PRK10977 336 DEAANELGYRISAQLAEIVE--------NTPVKY-GWG------GRA-----------------LL--HAQSGI------ 375 (509)
T ss_pred CHHHHHHHHHHHHHHHHHHH--------HhCCcc-Chh------hHH-----------------HH--HHHhCC------
Confidence 78999999999999984433 4442 1 000 000 00 000000
Q ss_pred ccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhh
Q psy1689 399 APMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 478 (998)
Q Consensus 399 aiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~ 478 (998)
++ - -+.|+|+ .+|
T Consensus 376 ---~~----d-~~yTns~-----------------------------------------------------hiP------ 388 (509)
T PRK10977 376 ---SS----D-KGVTPGV-----------------------------------------------------RIP------ 388 (509)
T ss_pred ---CC----C-CCccCCe-----------------------------------------------------Eec------
Confidence 00 0 0111111 011
Q ss_pred cccccCCChHHHHHHHHHhCCccccccceeEeec-C--CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHhH
Q psy1689 479 YKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK 555 (998)
Q Consensus 479 f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~-~--~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~~ 555 (998)
...++++.++|+..+..|+|...+++.-+++. . .+++-+.++-..|.+.|+.=.+++.-++.....-.+-|.++.
T Consensus 389 --V~~e~d~~eki~~ea~~h~~~tGG~i~i~~ld~~~~~NpeAl~~lvk~a~~~gi~Yfsin~~~~d~vrvtgy~~~~s~ 466 (509)
T PRK10977 389 --YGDEPDPITHLQTSAPHHKYYPSGISDILTFDETIKRNPQALVDLCKGAFKAGMREFTANVSGNDLVRVTGYMVKLSD 466 (509)
T ss_pred --CCCCCCHHHHHHhhcccCCccCCceEEEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCceEEEEeEEeeHHH
Confidence 23458889999999999999999998888884 2 478889999899999999888888777766666666665443
Q ss_pred h
Q psy1689 556 M 556 (998)
Q Consensus 556 ~ 556 (998)
+
T Consensus 467 ~ 467 (509)
T PRK10977 467 I 467 (509)
T ss_pred H
Confidence 3
No 70
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=97.01 E-value=0.028 Score=69.62 Aligned_cols=242 Identities=15% Similarity=0.265 Sum_probs=143.4
Q ss_pred HHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceeccc------------CCCCcceeeecccccccccCC
Q psy1689 188 WFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT------------SKDEVAVCNLASIALNMYINP 255 (998)
Q Consensus 188 w~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~------------~~~~~~~CNL~SINL~~~v~~ 255 (998)
++.+.+++.+.|.|++.+-.+.. +.+ |.+. -=|+-..+-. ...-++++.--||||++.--+
T Consensus 345 ~d~~~e~~ak~g~p~f~n~~~~~-~~~----~~~~--~MgCR~~l~~~~~~~~~~g~~g~~~~~GnigvvTiNLPRia~~ 417 (656)
T PRK08270 345 ADLLFEMTAKYGLPYFQNFINSD-LKP----EDVR--SMCCRLQLDLRELRKRGGGLFGSAELTGSIGVVTINLPRLGYL 417 (656)
T ss_pred HHHHHHHHHhhCCcccccccccc-cCC----CCcc--ccCCCCccchhhhhhhcCCcccCCCccceeeeEeccHHHHHHH
Confidence 56778888899999998532211 111 1111 1133221110 111234444559999997543
Q ss_pred CCCCCC----hhHHHHHHHHHHHHH-------HHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH-HcCCCCCCHHH
Q psy1689 256 ADKTYN----FTKLKDVAKIVTKNL-------NKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI-QMRLPFDCNES 323 (998)
Q Consensus 256 ~~~~fD----~~~l~~~v~~avr~L-------D~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~-~lgl~Y~S~ea 323 (998)
. . | |+.|.+.+.++...| ...+..+.||.-.......+....-||+.||++++. ..|...+++|+
T Consensus 418 a--~-d~~~F~~~L~~~l~la~~~L~~r~~~l~~~~~~~l~p~~~~~l~~~~~~~~TIG~iGl~E~~~~~~G~~~~~~e~ 494 (656)
T PRK08270 418 S--K-DEEEFFARLDELMDLAKDSLEIKRKVIERLTDKGLYPYTKRYLGTLRNHFSTIGLNGMNEACLNFLGKDITTEEG 494 (656)
T ss_pred c--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHhcCCeeeeehhhHHHHHHHHhCCCCCCHHH
Confidence 1 2 4 455666666665544 334454667754432222333444689999999886 78888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccccccCC
Q psy1689 324 RLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMP 402 (998)
Q Consensus 324 ~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaP 402 (998)
.+|+.+|+++|...+-+.+ +|.|- |. .+ .+|....--.-.+.|-++||..-
T Consensus 495 ~~f~~~vl~~m~~~~~~~~----~e~g~~~~-l~---------------~TPAEs~~~rfak~D~~~fg~i~-------- 546 (656)
T PRK08270 495 RAFALRVLDHMRERLVEFQ----EETGNLYN-LE---------------ATPAEGTTYRLAKEDKKRYPDII-------- 546 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHCCceE-EE---------------ECccchHHHHHHHHHHHHcCCcc--------
Confidence 9999999999998887666 44553 21 11 12321111122344556676311
Q ss_pred ccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccc
Q psy1689 403 TASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 482 (998)
Q Consensus 403 Tgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA 482 (998)
+.|.+. .|+|.|.|- +| ..
T Consensus 547 ------~~g~~d--~~YYTNS~h---------------------------------------------~~--------v~ 565 (656)
T PRK08270 547 ------TAGTDE--EPYYTNSTQ---------------------------------------------LP--------VG 565 (656)
T ss_pred ------cCCCCC--CCcccCCcc---------------------------------------------cC--------CC
Confidence 123221 144333221 11 13
Q ss_pred cCCChHHHHHHHHHhCCccccccceeEeecCC--CHHHHHHHHHHHHH
Q psy1689 483 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI--NYAKMSSMHFHGWK 528 (998)
Q Consensus 483 ~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~--t~~~i~~~~~~Awk 528 (998)
.++++.+.|++.+..|++.+-+--.-+++++. +.+-+.++..++.+
T Consensus 566 ~~~~~feki~~e~~~~~~~~GG~I~hv~l~e~~~n~~a~~~lv~~~~~ 613 (656)
T PRK08270 566 YTDDPFEALELQDELQTKYTGGTVFHLYLGEAISDAEACKKLVKKALE 613 (656)
T ss_pred CCCCHHHHHhhhccCcceecceEEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 45788889999999999999998889999863 67888888777765
No 71
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.80 E-value=0.043 Score=68.94 Aligned_cols=261 Identities=16% Similarity=0.181 Sum_probs=149.1
Q ss_pred cHHHHHHHHHHHHHhhCCceeEehhhh-hhh--CCCCCCCceeecCCccceecccC----CCC--cceeeeccccccccc
Q psy1689 183 PARKLWFAILDSQIETGTPYMLYKDAC-NRK--SNQQNLGTIKCSNLCTEIVEYTS----KDE--VAVCNLASIALNMYI 253 (998)
Q Consensus 183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~-Nr~--~~~~~~g~I~~sNpC~EI~l~~~----~~~--~~~CNL~SINL~~~v 253 (998)
+-.+||+..+++..+.+-|+++|.|.. |.. .+-.....|. -=|+-..+... ... +++-.+.+|||++.-
T Consensus 378 p~~~l~~la~~~~~kr~~p~f~~~~~~~~~~~~~~g~~~~~v~--~MgCR~~l~~~~~G~~~~~g~Gn~gvVTINLpRiA 455 (735)
T PRK07111 378 PNYDLFKLACRVAAKRLFPNFSFLDAPFNKEYYDKGRPPTEVA--TMGCRTRVMSNVNGEEGTKGRGNLSFTTINLPRLA 455 (735)
T ss_pred chHHHHHHHHHHhcCcCCCceeecccccchhccCCCCcCcCcc--cCCCcceecccCCCcccccCccceeEEEecHHHHH
Confidence 368899999999999999999999854 221 1110000000 11222111110 011 233445699999875
Q ss_pred CCCCCCCC--hhHHHHHHHHHHHHHHH---hh---hcCCCcHHHH--HH-HH------------hhcCCCccccchHHHH
Q psy1689 254 NPADKTYN--FTKLKDVAKIVTKNLNK---II---DVNFYPVEEA--RN-SN------------MRHRPIGIGVQGLADL 310 (998)
Q Consensus 254 ~~~~~~fD--~~~l~~~v~~avr~LD~---vI---d~~~~p~~e~--~~-~~------------~~~R~IGLGv~GLad~ 310 (998)
-...+..| |+.|.+.+.++...|+. ++ ....+|.-.. .. .. -++-.+.||+.||+.+
T Consensus 456 ~~a~~d~~~F~~~L~~~l~la~~~L~~R~~~l~~~~~~~~P~~~~~g~~l~~~~l~~~~~~~~~~~~~t~tiG~iGL~Ea 535 (735)
T PRK07111 456 IEAKKDIDKFFELLDERLELAIEQLLHRYEVQKTLKVKDFPFLMGQGLWKGSENLGPDDSIEPVLKQGTLGIGFIGLAET 535 (735)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchHhhcccccccccCCCccchhHHhhcCceeeeHHHHHHH
Confidence 42111111 45667777777666632 12 2234554321 00 00 1223567999999998
Q ss_pred HHH-cCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689 311 FIQ-MRLPF-DCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387 (998)
Q Consensus 311 L~~-lgl~Y-~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i 387 (998)
+.. .|..+ .+++|.+|+.+|.++|...+-+.+.+ .|- |. .. .+|....--.-.+.|-
T Consensus 536 ~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~~e----~G~~~~-l~---------------~tPAEs~~~rfa~~D~ 595 (735)
T PRK07111 536 LVALTGKHHGESEEAQELGLKIVSHMRDFCDEYKEE----YKLNYS-LL---------------ATPAEGLSGRFIKMDR 595 (735)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----hCCCce-EE---------------EcccchhHHHHHHHHH
Confidence 865 67776 79999999999999998887766533 342 11 10 1121100001124455
Q ss_pred HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467 (998)
Q Consensus 388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~ 467 (998)
++||+ +.|++. .|+|.|.|.
T Consensus 596 ~~fg~----------------i~g~~d--~~yYTNS~h------------------------------------------ 615 (735)
T PRK07111 596 KKFGE----------------IKGVTD--KEYYTNSFH------------------------------------------ 615 (735)
T ss_pred HhcCC----------------CCCCCC--CCcccccee------------------------------------------
Confidence 56663 013221 134443332
Q ss_pred cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC---CCHHHHHHHHHHHHHcCCceEEE
Q psy1689 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE---INYAKMSSMHFHGWKLGLKTGMY 536 (998)
Q Consensus 468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~---~t~~~i~~~~~~Awk~GlKt~~y 536 (998)
+| ...++++.+.|+..+..|++...+...-+++++ .+++-+.++-..|.+.|+.=.++
T Consensus 616 ---lp--------v~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~~i~Y~si 676 (735)
T PRK07111 616 ---VP--------VYYPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNTNIGYGSI 676 (735)
T ss_pred ---ec--------CCCCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhCCCceEEe
Confidence 11 123478889999999999999999999999984 36777777777777766554333
No 72
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.73 E-value=0.061 Score=67.32 Aligned_cols=249 Identities=13% Similarity=0.086 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceec--cc----CCCCcceeeec--ccccccccCC
Q psy1689 184 ARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVE--YT----SKDEVAVCNLA--SIALNMYINP 255 (998)
Q Consensus 184 Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l--~~----~~~~~~~CNL~--SINL~~~v~~ 255 (998)
-.+||+..+++..+.+.|.++|.|.+-+. .|.+.++ -|+--.+ .. ....++.+||+ ||||++.--.
T Consensus 347 ~~~l~~~a~~~~~k~~~p~f~~~~~~~~~-----~g~~~~~-MgCR~~l~~~~~~~g~~~~~Gr~nigvvTiNLPRia~~ 420 (711)
T PRK09263 347 NYDIKQLALECATKRMYPDILNYDKIVEL-----TGSFKTP-MGCRSFLQGWKDENGEEVHDGRNNLGVVTLNLPRIALE 420 (711)
T ss_pred hHHHHHHHHHHhccccCCceecccchhhc-----CCCeeeC-CCCCCcCcchhccCCCccccccceeeEEeccHHHHHHH
Confidence 56889999999999999999998854221 1222211 1222110 00 01124567776 9999987542
Q ss_pred CCCCCC--hhHHHHHHHHHHHHHHHh------hhcCCCcHHHHH--------------HHHhhc-CCCccccchHHHHHH
Q psy1689 256 ADKTYN--FTKLKDVAKIVTKNLNKI------IDVNFYPVEEAR--------------NSNMRH-RPIGIGVQGLADLFI 312 (998)
Q Consensus 256 ~~~~fD--~~~l~~~v~~avr~LD~v------Id~~~~p~~e~~--------------~~~~~~-R~IGLGv~GLad~L~ 312 (998)
..+..+ |+.|.+.+.++...|..= .....+|+--.. ...+.. =++-||+.||++++.
T Consensus 421 ~~~d~~~F~~~Ld~~l~la~~~L~~r~~~~~~~~~~~~P~l~~~g~~~~~l~~~~~~~~~~~~~~~T~siG~iGl~E~~~ 500 (711)
T PRK09263 421 AKGDEDKFWEILDERLELAKKALMTRIERLKGAKPRVAPILYMYGAFGVRLKADDDVDELFKNGRATISLGYIGLYETIN 500 (711)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHhccccccCCCCcchHHHhcCCCceEeeeHhHHHHHHH
Confidence 111111 456777777776665322 122456643211 011111 145799999999986
Q ss_pred -HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhc
Q psy1689 313 -QMRLPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390 (998)
Q Consensus 313 -~lgl~Y~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~ 390 (998)
..|-... ++++.+|+.+|+++|...+-+.+ +|.|--=... .+|....--.-.+.|-+++
T Consensus 501 ~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~----~e~g~~~~l~---------------~TPAEs~~~rfak~D~~~f 561 (711)
T PRK09263 501 ALYGGSWEVNPEAKAFALAIVKRMKDACDQWK----KETGYGFSLY---------------STPSESLTDRFCRLDTEKF 561 (711)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEE---------------ECCcchHHHHHHHHHHHHc
Confidence 7788776 99999999999999988877665 5556311111 1232111112334556677
Q ss_pred CCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCC
Q psy1689 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG 470 (998)
Q Consensus 391 G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~ 470 (998)
|+ +-|.|. .|+|.|.|.
T Consensus 562 g~----------------i~g~~d--~~YYTNS~h--------------------------------------------- 578 (711)
T PRK09263 562 GV----------------IPGITD--KGYYTNSFH--------------------------------------------- 578 (711)
T ss_pred CC----------------CCCCCC--CCccCCCEe---------------------------------------------
Confidence 73 123322 244444332
Q ss_pred CChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC--CCHHHHHHHHHHHHH
Q psy1689 471 IPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWK 528 (998)
Q Consensus 471 lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~--~t~~~i~~~~~~Awk 528 (998)
+| .-.++++.+-|+..+..|++..-+--.-+.+++ .+.+.+.++..++.+
T Consensus 579 ~p--------v~~~i~~~eki~~e~~~~~~~~GG~I~yve~~~~~~n~~a~~~lv~~~~~ 630 (711)
T PRK09263 579 YD--------VRKKVNPFEKLDFEKPYPPLASGGFIHYCEYPNLQHNLKALEAVWDYSYD 630 (711)
T ss_pred cC--------CCCCCCHHHHHHhhcccccccCCeEEEEEecCCCcCCHHHHHHHHHHHHH
Confidence 11 123377888899999999988887555566664 467778888778877
No 73
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.62 E-value=0.084 Score=65.06 Aligned_cols=254 Identities=17% Similarity=0.178 Sum_probs=150.0
Q ss_pred cHHHHHHHHHHHHHhhCCceeEehhhh-h--hh--CCCCCCCceeecCCccceecccC----CCCcceee--eccccccc
Q psy1689 183 PARKLWFAILDSQIETGTPYMLYKDAC-N--RK--SNQQNLGTIKCSNLCTEIVEYTS----KDEVAVCN--LASIALNM 251 (998)
Q Consensus 183 ~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~-N--r~--~~~~~~g~I~~sNpC~EI~l~~~----~~~~~~CN--L~SINL~~ 251 (998)
+-.+||+..+++..+.+.|.++|.|.. | .+ .+. ..+. -=|+-..+... ....+.+| +.+|||++
T Consensus 259 p~~~l~~la~~~~~kr~~p~f~~~~~~~n~~~~~g~~~---~~~~--~MgCR~~l~~~~~G~~~~~g~GnigvVTINLPR 333 (618)
T PRK14704 259 PNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPE---SEVC--YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVK 333 (618)
T ss_pred chHHHHHHHHHHhcCcCCcceeccccccchhhhcCCCC---cccc--cCcccceeccccCCCcCCCccceeeeEEeeHHH
Confidence 468899999999999999999999853 2 21 110 0110 11222111110 01123445 45999998
Q ss_pred ccCCCCCCCC----hhHHHHHHHHHHHHHHHhhh------cCCCcHHHHHHH---H------------hhcCCCccccch
Q psy1689 252 YINPADKTYN----FTKLKDVAKIVTKNLNKIID------VNFYPVEEARNS---N------------MRHRPIGIGVQG 306 (998)
Q Consensus 252 ~v~~~~~~fD----~~~l~~~v~~avr~LD~vId------~~~~p~~e~~~~---~------------~~~R~IGLGv~G 306 (998)
.--.. + | |+.|.+.+.++.+.|+.=++ ...+|.--..-. . .++-++-||+.|
T Consensus 334 IA~~a-~--d~e~F~~~L~~~l~l~~~~L~~R~~~l~~~~~~~~P~l~~~g~~~~~~~l~~~~~~~~~~~~~t~siG~iG 410 (618)
T PRK14704 334 LALIS-G--SKEAFFEALNYYLDLGIKQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILKQGTLSLGFIG 410 (618)
T ss_pred HHHHC-C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHCcccccccccCCCcchhhhcccceeeeeHHH
Confidence 75432 1 3 44566777777666644222 222343211100 0 011235689999
Q ss_pred HHHHHH-HcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHH
Q psy1689 307 LADLFI-QMRLPF-DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALK 384 (998)
Q Consensus 307 Lad~L~-~lgl~Y-~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr 384 (998)
|++++. ..|..+ .|++|.+|+.+|+++|...+-+.+ +|.|.-=..++ +|....--.-++
T Consensus 411 L~Ea~~~l~G~~~~~~~ea~~fa~~Il~~m~~~~~~~~----~e~g~~~nl~~---------------TPAEs~~~Rfa~ 471 (618)
T PRK14704 411 LAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKAT----EEHELNFSVIA---------------TPAEGLSGKFVK 471 (618)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCCceeee---------------cccccHHHHHHH
Confidence 999775 556666 789999999999999998877666 44553111111 222111112344
Q ss_pred HHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCc
Q psy1689 385 EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGS 464 (998)
Q Consensus 385 ~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gs 464 (998)
.+-+++|+ +-|++. .|+|.|.|.
T Consensus 472 ~D~~~fg~----------------i~gv~d--~~YYTNS~h--------------------------------------- 494 (618)
T PRK14704 472 KDREEFGV----------------ISGITN--HNYYTNSFH--------------------------------------- 494 (618)
T ss_pred HHHHhCCC----------------cCCCCC--CCcccCcee---------------------------------------
Confidence 45566653 124432 466655442
Q ss_pred ccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeec-C--CCHHHHHHHHHHHHHcCCceE
Q psy1689 465 IQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTG 534 (998)
Q Consensus 465 v~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~-~--~t~~~i~~~~~~Awk~GlKt~ 534 (998)
+| .-.++++.+.|+..+..|++...+...-++++ + .+++-+.++-..|.+.|+.=.
T Consensus 495 ------ip--------V~~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i~Y~ 553 (618)
T PRK14704 495 ------IP--------VYYNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYG 553 (618)
T ss_pred ------cc--------CCCCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCCceE
Confidence 11 12347888999999999999999999999995 4 477888888777777655443
No 74
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=96.03 E-value=0.1 Score=64.19 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=125.5
Q ss_pred CcceeeecccccccccCCCCC--CCChhHHHHHHHHHHHH-------HHHhhhcCCCcHHHHHHHHhhcCCCccccchHH
Q psy1689 238 EVAVCNLASIALNMYINPADK--TYNFTKLKDVAKIVTKN-------LNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLA 308 (998)
Q Consensus 238 ~~~~CNL~SINL~~~v~~~~~--~fD~~~l~~~v~~avr~-------LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLa 308 (998)
.+++++.-||||++..-..++ .| |+.|.+.+.++.+. |...+..+.+|+-...-...+.--+-||+.||+
T Consensus 347 ~tGSigVVTINLPRia~~a~~~~~F-~e~Ld~~lela~~~l~~~R~~l~~~~~~~~~P~~~~~~~~l~~~f~TIGiiGl~ 425 (623)
T PRK08271 347 NTGSINVITINLPRIAQEARDRDDF-LEILRERVDKIHKYQLAYREIMEERIAAGMLPLYDAGFISLDKQFLTIGINGMV 425 (623)
T ss_pred ccCCcceEEccHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhhcccccceEeeeHhhHH
Confidence 467788889999997643211 11 56667766666553 455566677886553322233444789999999
Q ss_pred HHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHH
Q psy1689 309 DLFIQMRLP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386 (998)
Q Consensus 309 d~L~~lgl~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~ 386 (998)
.++..+|.. .+++++.+|+.+|.++|...+.+.+ +|.|- |. .+ .+|....--.-.+.|
T Consensus 426 Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~----~etG~~fn-le---------------~TPAEsls~RfAk~D 485 (623)
T PRK08271 426 EAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKAS----KEYGFTFN-TE---------------FVPAENLGVKLAKWD 485 (623)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCCceE-EE---------------ECCcchHHHHHHHHH
Confidence 999999988 7899999999999999998887766 44552 21 11 122111111112233
Q ss_pred HHh-cCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcc
Q psy1689 387 IAK-HGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 465 (998)
Q Consensus 387 i~~-~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv 465 (998)
-++ ||+ + -.|+.++ +
T Consensus 486 ~~~~fg~---------~-------------~~~Y~s~-----------------------------------------s- 501 (623)
T PRK08271 486 REDGYGV---------P-------------RQCYNSY-----------------------------------------S- 501 (623)
T ss_pred HHhccCC---------C-------------CCCCccc-----------------------------------------c-
Confidence 344 553 0 0111100 0
Q ss_pred cccCCCChhhhhhcccccCCChHHHHHHHHH-hCCccccccceeEeecCC-CHHHHHHHHHHHHHc
Q psy1689 466 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD-RGAFIDQSQSLNIYMAEI-NYAKMSSMHFHGWKL 529 (998)
Q Consensus 466 ~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~-~Q~~VDqs~S~tl~l~~~-t~~~i~~~~~~Awk~ 529 (998)
+ +|. -.++++.+-|++.+. .|++.+-+--.-|++++. +.+.+.++..++.+.
T Consensus 502 -~---~pv--------~~~~~~~eki~~e~~~~~~~~tGG~I~hi~l~e~~n~eal~~lv~~~~~~ 555 (623)
T PRK08271 502 -Y---VVE--------DANTDALDKFKLHGKELDKYLSGGSALHLNLDERLSEEGYRKLLNIAAKT 555 (623)
T ss_pred -c---cCC--------CCCCCHHHHHHhhcccccceecceEEEEEEcCCCCCHHHHHHHHHHHHHc
Confidence 1 111 234788889999999 999999999999999864 778888888888763
No 75
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=95.88 E-value=0.016 Score=70.47 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=84.6
Q ss_pred eecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCccceeccc---------CCCCcceeeec--cccc
Q psy1689 181 QVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYT---------SKDEVAVCNLA--SIAL 249 (998)
Q Consensus 181 ~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC~EI~l~~---------~~~~~~~CNL~--SINL 249 (998)
.-+-.+||+..+++..+.+.|++.+...-....+. |+-..+.. .....+.+||+ ||||
T Consensus 222 ~~~~~~l~~~a~k~~~~~~~p~~~~~~~~~~~~~M-----------cCR~~l~~~~~~~~~~~~~~~~~~GnigvVTINL 290 (546)
T PF13597_consen 222 GDPNYDLFELAAKCGAKRFYPDFNSDLDPDDVRSM-----------CCRLRLSLNELGNGGGLFGSGDGTGNIGVVTINL 290 (546)
T ss_dssp TSTTHHHHHHHHHHHHHHS--EEEEHHHHHH---B-----------TTTB-----B-TTS-B-----TT-BEEEEEEEEH
T ss_pred CCchHHHHHHHHHHhHHhCCCCeecCCCCcceecc-----------ccccccChhhhccCCcceeccccccceeEEEecH
Confidence 44568999999999999999999766533222111 11111000 00112345655 9999
Q ss_pred ccccCCCCCCC-ChhHHHHHHHHHHH-HHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHHHcCCC-CCCHHHHHH
Q psy1689 250 NMYINPADKTY-NFTKLKDVAKIVTK-NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP-FDCNESRLL 326 (998)
Q Consensus 250 ~~~v~~~~~~f-D~~~l~~~v~~avr-~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~~lgl~-Y~S~ea~~l 326 (998)
++..-+..+.. .|.+|.+. .++.| .+...++.+.+|.-.......+.-..-||+.||++++..+|-. .+++++.+|
T Consensus 291 PRiA~~a~~d~~~f~~L~~~-~~~~r~~i~~~~~~~~~P~~~~~~~~~~~~~~tIG~iGL~Ea~~~~g~~~~~~~~~~~f 369 (546)
T PF13597_consen 291 PRIAYEAKGDEDFFEELDKL-MLAKRKVIKKLLEAGLYPFTKQYLWRLKNHFSTIGIIGLNEALQNFGGKHHESPEGREF 369 (546)
T ss_dssp HHHHHTTEE-HHHHHHHHHH-HHHHHHHHHHHHHGGG-HHHHTST-SHTTTTSEEEEE-HHHHHHHH---------TS--
T ss_pred HHHHHHhCCcHHHHHHHHHH-HHHHHHHHHhhccCCcCchhHhhHhhhcCeeEeecHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99764421100 14555433 23333 4666677777886544333345667889999999999988776 478999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q psy1689 327 NKQIFETIYYGALEASCEIAARDG 350 (998)
Q Consensus 327 ~~~I~e~i~~~A~~aS~eLAke~G 350 (998)
+.+|.++|...+.+.+ +|.|
T Consensus 370 ~~~Vl~~m~~~~~~~~----~e~g 389 (546)
T PF13597_consen 370 ALKVLEHMRDKADEFQ----EETG 389 (546)
T ss_dssp HHHHHHHHHHHHHHHH----HHHS
T ss_pred HHHHHHHHHHHHHHHH----HHHC
Confidence 9999999988877655 5666
No 76
>PRK08579 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=95.74 E-value=0.42 Score=59.11 Aligned_cols=202 Identities=13% Similarity=0.092 Sum_probs=115.4
Q ss_pred cceeeecccccccccCCCCCCCC--hhHHHHHHHHHHHHHH-------Hhhhc--CCCcHHHHHHHHh-hcCCCccccch
Q psy1689 239 VAVCNLASIALNMYINPADKTYN--FTKLKDVAKIVTKNLN-------KIIDV--NFYPVEEARNSNM-RHRPIGIGVQG 306 (998)
Q Consensus 239 ~~~CNL~SINL~~~v~~~~~~fD--~~~l~~~v~~avr~LD-------~vId~--~~~p~~e~~~~~~-~~R~IGLGv~G 306 (998)
++++...||||++.--+..+..+ |+.|.+.+.++...|. ..++. ..||.-...-... ..-..-||+.|
T Consensus 333 ~GnigVVTINLPRIa~~a~gd~~~F~~~Ld~~lela~~~L~~kr~~~~~~~~~~~~l~P~~~~~l~~~~~~~~~tIG~iG 412 (625)
T PRK08579 333 TGSVNVTTVNLPRIALEARGDDDKFWELYEERLELVRITLDWFRERYVKLLKTYPEMYSMIKEYLEEFPSSHFNTIGIIG 412 (625)
T ss_pred cCceeeEeccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHhchhhhhCCEEEEEeeh
Confidence 44455559999997542111111 5667777777766665 23333 3455421110111 22347899999
Q ss_pred HHHHHHH-cCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCH
Q psy1689 307 LADLFIQ-MRLP--------FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL 377 (998)
Q Consensus 307 Lad~L~~-lgl~--------Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~ 377 (998)
|+.++.. .|.. -++++|.+++.+|.++|...+.+.+ +|.|--=..+ .+|...
T Consensus 413 l~E~~~~~~G~~~~~~~~~~~~~~~~~~~~~~il~~mr~~~~~~~----~etg~~~nle---------------~TPAEs 473 (625)
T PRK08579 413 LPEAAAIYLGEPKLWTEGSRRDWLEAAELMKKMVEFAVEKAREWM----KETGTPWNVE---------------EVPGES 473 (625)
T ss_pred HHHHHHHHcCCCcccccCChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHCCceEEE---------------Ecccch
Confidence 9998865 6643 3567789999999999988776554 4455311111 122211
Q ss_pred hhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHH
Q psy1689 378 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQ 457 (998)
Q Consensus 378 ~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~ 457 (998)
.--.-.+.|-+++|.- +. ++..+--|+|.|.|. .
T Consensus 474 ~~~Rfak~D~~~fg~i--------~~-------~~~~~~~~yYTNS~~-p------------------------------ 507 (625)
T PRK08579 474 AAAKLAIKDLKLFPEL--------RE-------YLSDPENPIYSTSIA-P------------------------------ 507 (625)
T ss_pred HHHHHHHHHHHHcCCC--------cc-------cccCCCCCceeCcee-e------------------------------
Confidence 1112233445566621 10 000011133333221 1
Q ss_pred HhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHH
Q psy1689 458 LIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWK 528 (998)
Q Consensus 458 i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk 528 (998)
+ ..++++.+-|+..+..|++.+-+--.-|++.+ ++.+-+.++..++.+
T Consensus 508 --------------------v---~~~i~~~eki~~e~~~~~~~~GG~i~hi~l~E~pn~~al~~lv~~~~~ 556 (625)
T PRK08579 508 --------------------Y---YGPLELWDRIEIEEKVQQEFTGGVMMHIFLGEEPDPEALAKLTKRIMN 556 (625)
T ss_pred --------------------C---CCCCCHHHHHHhhccccccccCceEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0 13477888899999999999999888899985 567788888888855
No 77
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=93.33 E-value=0.65 Score=56.97 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=76.9
Q ss_pred CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHH----HHHHhhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH
Q psy1689 237 DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTK----NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312 (998)
Q Consensus 237 ~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr----~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~ 312 (998)
.-+|++..-+|||++..-..+ |++++-++++.+.. .|...++.+.+|+-..........-.-||+.||+.++.
T Consensus 319 ~~tGSigVVTINLPRia~~a~---~L~~~l~la~~~L~~kr~~l~~~~~~g~~P~~~~~~~~~~~~f~TIGiiGl~Ea~~ 395 (586)
T TIGR02827 319 VATGSINVITINMNRLVQDSR---DLAHEVEKIHKYQVAYRELMKEYLAAGLLPLYDAGFITLDKQFLTIGINGMVEAAE 395 (586)
T ss_pred CcccccceEEecHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHhhhcccccceEeeeHhhHHHHHH
Confidence 357788888999999764321 34444444432222 35556677778876654444444558899999999999
Q ss_pred HcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy1689 313 QMRLP-FDCNESRLLNKQIFETIYYGALEASCEIAARDGP 351 (998)
Q Consensus 313 ~lgl~-Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~ 351 (998)
.+|.. -+++++.+|+.+|+++|...+.+.+ +|.|-
T Consensus 396 ~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~----~etG~ 431 (586)
T TIGR02827 396 FMGLTVGYNEEYKDFVQNVLKVIYEANQKAY----HEYGF 431 (586)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHCC
Confidence 89987 5789999999999999998887766 55663
No 78
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=89.01 E-value=8.6 Score=45.33 Aligned_cols=263 Identities=14% Similarity=0.146 Sum_probs=162.2
Q ss_pred ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceeecCCccceecccCCCCcceeeecccccccccCCC
Q psy1689 178 FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA 256 (998)
Q Consensus 178 ~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~ 256 (998)
+-..+...++...-++++.+|+.|-+.+.- +.+.... ...|.+. |--.+ |. --++..|.-+||.+....-
T Consensus 171 Yd~~~Tpdd~~~~A~~~~l~csKP~faN~~-~~~~~~~~~~ygIvS----CYN~L-p~---~GGa~TLvRlnL~~vA~~a 241 (487)
T PF11230_consen 171 YDPEITPDDFAEQAIENILECSKPHFANHP-MHRKDFGEGDYGIVS----CYNSL-PL---GGGAYTLVRLNLKEVAKRA 241 (487)
T ss_pred eCCCCCcHHHHHHHHHHHHhcCCchhcCCH-hHHHhcCCCCeeEEE----ecccc-cc---CCcchhhhhhhHHHHHHHc
Confidence 346788999999999999999999986542 2222222 3445444 43332 21 1246789999998876431
Q ss_pred CC--CCChhHHHHHHHHHHHHHHHhhhc-----CCCc----HHHHHHHHhhcCCCc-cccchHHHH----HHHcCC--CC
Q psy1689 257 DK--TYNFTKLKDVAKIVTKNLNKIIDV-----NFYP----VEEARNSNMRHRPIG-IGVQGLADL----FIQMRL--PF 318 (998)
Q Consensus 257 ~~--~fD~~~l~~~v~~avr~LD~vId~-----~~~p----~~e~~~~~~~~R~IG-LGv~GLad~----L~~lgl--~Y 318 (998)
.. .|=-..|-+.+.+...++|.=|.. ++|. +.|- ...+.|=.| .|+.|||+. |.+.|. .|
T Consensus 242 ~~~~dF~~~~LP~~~~~~~~~md~R~~flvEeS~FFessFLvkEG--lI~~~rF~~MFGi~GlAEaVN~Ll~~eg~~~~y 319 (487)
T PF11230_consen 242 KDIEDFLNNVLPYYCDLMLEYMDARIRFLVEESNFFESSFLVKEG--LIERDRFTPMFGIVGLAEAVNILLEKEGKEERY 319 (487)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcc--ccchhhcchHhHHHHHHHHHHHHHhccCCcccc
Confidence 11 122245677888888888765432 2222 2221 123445555 499999984 334444 77
Q ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcccc
Q psy1689 319 D-CNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLL 397 (998)
Q Consensus 319 ~-S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs~l 397 (998)
+ |++|-++..+|++.|.... ..+| .+|..|.= - +-+=+||.
T Consensus 320 G~~~~An~Lg~~I~~~l~~~V-----------~~~~----~~y~~~~~------g-----------------r~lLHAQv 361 (487)
T PF11230_consen 320 GHDEEANELGVRIMEKLAEIV-----------KSHP----VKYCEGTG------G-----------------RFLLHAQV 361 (487)
T ss_pred CCChHHHHHHHHHHHHHHHHH-----------hcCC----CccccccC------C-----------------EEEEEecc
Confidence 6 6789999999988764321 1111 12222210 0 00112221
Q ss_pred cccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhh
Q psy1689 398 IAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477 (998)
Q Consensus 398 taiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~ 477 (998)
.+|.=.|+|+|..= |
T Consensus 362 -------Gi~~D~~~TPG~RI-----------------------------------------------------p----- 376 (487)
T PF11230_consen 362 -------GISSDKGVTPGVRI-----------------------------------------------------P----- 376 (487)
T ss_pred -------CccccCCCCCCCcC-----------------------------------------------------c-----
Confidence 13444455554321 1
Q ss_pred hcccccCCChHHHHHHHHHhCCccccccceeEeecC---CCHHHHHHHHHHHHHcCCceEEEEeeccccccccchhhhHh
Q psy1689 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE---INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554 (998)
Q Consensus 478 ~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~---~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~~~~~~~~ 554 (998)
...|.++-+||...|..-+|-..+||=-+-+.+ .+++-+.++..=|.++|++-.+.|.-++.-...-.+-|.++
T Consensus 377 ---~G~EP~~~~hl~~~A~~H~yfpsGi~DIf~~d~T~k~NP~A~ldi~kGAf~~G~Ryfs~y~~~sDlVRVTGYlVK~S 453 (487)
T PF11230_consen 377 ---YGEEPDLVDHLQASAPFHKYFPSGIGDIFTFDETVKNNPEALLDICKGAFSLGMRYFSAYVSDSDLVRVTGYLVKRS 453 (487)
T ss_pred ---CCCCCCHHHHHHHhcccccCCCCCcccccccchhhHhCHHHHHHHHHHHHhcCCeEEEEecCCCceEEEeeeeehhh
Confidence 122345677999999999999999997776664 46788999999999999999999988887777777777765
Q ss_pred Hhh
Q psy1689 555 KMA 557 (998)
Q Consensus 555 ~~~ 557 (998)
.+.
T Consensus 454 die 456 (487)
T PF11230_consen 454 DIE 456 (487)
T ss_pred hHH
Confidence 544
No 79
>PRK14704 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=85.37 E-value=11 Score=46.92 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=45.9
Q ss_pred CCCChHhHHHHHHHhCCcccccccceeecC-C--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTGMYY 941 (998)
Q Consensus 887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~--~~~~~i~~~y~~Aw~~GlK~~~yY 941 (998)
.++++.++|+.++.+|++...|...-++++ + .+++-+.++-..|.+.|+-=.+++
T Consensus 499 ~~~~~~eki~~e~~fh~~~~GG~I~hv~l~~~~~~n~~Al~~lvk~~~~~~i~Y~sin 556 (618)
T PRK14704 499 YNIQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAEHGVGYGSIN 556 (618)
T ss_pred CCCCHHHHHHhhcccccccCCeEEEEEEECCccCCCHHHHHHHHHHHHhcCCceEEeC
Confidence 457899999999999999999999999995 4 488999999888888776654443
No 80
>cd01675 RNR_III Class III ribonucleotide reductase. Ribonucleotide reductase (RNR) catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs are separated into three classes based on their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, and bacteriophage, use a diiron-tyrosyl radical. Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in strict or facultative anaerobic bacteria, bacteriophage, and archaea, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. All three RNRs have a ten-stranded alpha-beta barrel domain that is structurally similar to the domain of PFL (pyruvate formate lyase). The class III enzyme from phage T4 consists of two subunits, this model covers the larger subunit w
Probab=80.49 E-value=26 Score=43.18 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCCChHhHHHHHHHhCCcccccccceeecCC--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKTGMYY 941 (998)
Q Consensus 887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~~--~~~~~i~~~y~~Aw~~GlK~~~yY 941 (998)
.++++.++|+..+.+|++.+.|...-+++++ .+++.+.++-..|.+.|+.-...|
T Consensus 459 ~~~~~~eki~~e~~f~~~~~GG~i~hv~l~e~~~n~~al~~lv~~a~~~~~~y~~~~ 515 (555)
T cd01675 459 EDIDPFEKIDIEAKLHPLTTGGHILHIELGEAKPNPEALEALVKKAAKRGVIYFGIN 515 (555)
T ss_pred CCCCHHHHHHhhcccccccCCceEEEEECCCCCCCHHHHHHHHHHHHHcCCceEEEe
Confidence 4578899999999999999999999999993 489999999999999886653333
No 81
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=79.94 E-value=17 Score=46.17 Aligned_cols=55 Identities=7% Similarity=0.027 Sum_probs=45.6
Q ss_pred CCCChHhHHHHHHHhCCcccccccceeecC-C--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMA-E--INYAKMSSMHFHGWKLGLKTGMYY 941 (998)
Q Consensus 887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~-~--~~~~~i~~~y~~Aw~~GlK~~~yY 941 (998)
.++++.++|+.++.+|++...|...-++++ + .+++-+.++-..|.+.|+-=++++
T Consensus 620 ~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~e~~~n~eal~~lvk~~~~~~i~Y~sin 677 (735)
T PRK07111 620 YPISIFEKIEIEAPYHKLTNGGHISYVELDGDPSKNVEAFEIIVKAMKNTNIGYGSIN 677 (735)
T ss_pred CCCCHHHHHHhhcccccccCCeEEEEEEeCCccCCCHHHHHHHHHHHHhCCCceEEeC
Confidence 457889999999999999999999999998 4 378888888888888776654444
No 82
>PRK08271 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=53.57 E-value=20 Score=44.69 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=44.2
Q ss_pred ccCCcCcccccccHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 585 RRDNKEDCIGVQGLADLFIQMRLP-FDCNESRLLNKQIFETIYYGALEASCE 635 (998)
Q Consensus 585 ~~~~~~~g~g~~Glad~l~~lgi~-Y~S~ea~~l~~~i~e~i~~~a~~aS~e 635 (998)
.+++--.-||+-||+.++..+|.. .+|+|+.+|+.+|+++|...+-+.+.+
T Consensus 411 ~l~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~f~~~il~~mr~~~~~~~~e 462 (623)
T PRK08271 411 SLDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQEVLKVIYEANEKASKE 462 (623)
T ss_pred ccccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555789999999999999988 789999999999999999998877743
No 83
>PRK08270 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=46.81 E-value=30 Score=43.53 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCcCcccccccHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 587 DNKEDCIGVQGLADLFI-QMRLPFDCNESRLLNKQIFETIYYGALEASCE 635 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~-~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~e 635 (998)
.|...-||+.||++++. .+|...+|+||.+|+.+|+++|...+-+.+.|
T Consensus 466 ~~~~~TIG~iGl~E~~~~~~G~~~~~~e~~~f~~~vl~~m~~~~~~~~~e 515 (656)
T PRK08270 466 RNHFSTIGLNGMNEACLNFLGKDITTEEGRAFALRVLDHMRERLVEFQEE 515 (656)
T ss_pred cCCeeeeehhhHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444689999999986 88988889999999999999999998877743
No 84
>TIGR02827 RNR_anaer_Bdell anaerobic ribonucleoside-triphosphate reductase. Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons.
Probab=46.35 E-value=32 Score=42.66 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=42.2
Q ss_pred cCCcCcccccccHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLP-FDCNESRLLNKQIFETIYYGALEASC 634 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~-Y~S~ea~~l~~~i~e~i~~~a~~aS~ 634 (998)
++|--.-||+-||+.++..+|.. -+|+|+.+|+.+|+++|...+.+.+.
T Consensus 378 ~~~~f~TIGiiGl~Ea~~~~G~~~~~~~e~~~fa~~vl~~mr~~~~~~~~ 427 (586)
T TIGR02827 378 LDKQFLTIGINGMVEAAEFMGLTVGYNEEYKDFVQNVLKVIYEANQKAYH 427 (586)
T ss_pred cccceEeeeHhhHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555689999999999999988 57999999999999999998887763
No 85
>PRK09263 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=45.24 E-value=29 Score=44.04 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=38.3
Q ss_pred cccccccHHHHHH-HcCCCCC-CHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 591 DCIGVQGLADLFI-QMRLPFD-CNESRLLNKQIFETIYYGALEAS 633 (998)
Q Consensus 591 ~g~g~~Glad~l~-~lgi~Y~-S~ea~~l~~~i~e~i~~~a~~aS 633 (998)
+-||+.||++++. .+|-... |+||.+|+.+|+++|...+-+.+
T Consensus 488 ~siG~iGl~E~~~~~~G~~~~e~~e~~~fa~~vl~~m~~~~~~~~ 532 (711)
T PRK09263 488 ISLGYIGLYETINALYGGSWEVNPEAKAFALAIVKRMKDACDQWK 532 (711)
T ss_pred EeeeHhHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999985 8888877 99999999999999998887766
No 86
>TIGR02487 NrdD anaerobic ribonucleoside-triphosphate reductase. This model represents the oxygen-sensitive (anaerobic, class III) ribonucleotide reductase. The mechanism of the enzyme involves a glycine-centered radical, a C-terminal zinc binding site, and a set of conserved active site cysteines and asparagines. This enzyme requires an activating component, NrdG, a radical-SAM domain containing enzyme (TIGR02491). Together the two form an alpha-2/beta-2 heterodimer.
Probab=42.03 E-value=39 Score=41.95 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=46.8
Q ss_pred CCCChHhHHHHHHHhCCcccccccceeecCC--CCHHHHHHHHHHHHHcCCcEEEEE
Q psy1689 887 WEIPQKTVLDMAADRGAFIDQSQSLNIYMAE--INYAKMSSMHFHGWKLGLKTGMYY 941 (998)
Q Consensus 887 ~ei~~~~~I~m~a~~Q~~iDqsiS~tl~~~~--~~~~~i~~~y~~Aw~~GlK~~~yY 941 (998)
.++++.+.|+.++.+|++...|...-+++++ .+++.+.++-..|.+.|+-=.+++
T Consensus 465 ~~~~~~eki~~e~~f~~~~~GG~i~~v~l~e~~~n~eal~~lv~~a~~~~i~Y~~~n 521 (579)
T TIGR02487 465 EDVNLGEKIDIEAPFHPLTNGGHITYIELDEAIPDPEALKDITKKAMKNGIGYFGIN 521 (579)
T ss_pred CCCCHHHHHHhhcchhcccCCceEEEEEcCCCCCCHHHHHHHHHHHHhcCCceEEec
Confidence 3678999999999999999999999999983 478999999999999885544443
No 87
>COG1328 NrdD Oxygen-sensitive ribonucleoside-triphosphate reductase [Nucleotide transport and metabolism]
Probab=38.40 E-value=69 Score=40.51 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=63.2
Q ss_pred Ccceeeec--ccccccccCCCCCCCC--hhHHHHHHHHHHHHHHHh-------hhcCC-Cc----------HH-HHHHHH
Q psy1689 238 EVAVCNLA--SIALNMYINPADKTYN--FTKLKDVAKIVTKNLNKI-------IDVNF-YP----------VE-EARNSN 294 (998)
Q Consensus 238 ~~~~CNL~--SINL~~~v~~~~~~fD--~~~l~~~v~~avr~LD~v-------Id~~~-~p----------~~-e~~~~~ 294 (998)
..+.+||+ +|||++.--...+.-| |+.|.+.+.++...|..- +..+. |+ -+ -.....
T Consensus 399 ~~~~gn~~vvTlNLPRiA~~a~gD~~kf~e~l~~~lei~keaL~~r~~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 478 (700)
T COG1328 399 TLGTGNLGVVTLNLPRIALEAKGDDDKFFEILHERLEIAKEALLIRRERLKELIAKNALYMVGALGGRLNQEFDGSTIFR 478 (700)
T ss_pred cccccceeeEEEeccHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccccccccchhhhhc
Confidence 34567777 8999986533111011 566666666666655332 22220 11 00 011122
Q ss_pred hhcCCCccccchHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHH
Q psy1689 295 MRHRPIGIGVQGLADLFIQMRL--PFDCNESRLLNKQIFETIYYGALE 340 (998)
Q Consensus 295 ~~~R~IGLGv~GLad~L~~lgl--~Y~S~ea~~l~~~I~e~i~~~A~~ 340 (998)
...-.+.+|+.|++.++..+.- -++++||..+..+|.+.|+.++.+
T Consensus 479 ~~~~t~s~g~igl~E~l~~~~g~~~~~~~ea~~~~~~iv~~~~~~~~~ 526 (700)
T COG1328 479 NGRATISLGFIGLNEMLKYLTGEHLHESEEAKKFGIKIVEYIREYADK 526 (700)
T ss_pred cccceEEEeecchHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 2345689999999999987754 236999999999999999887764
No 88
>PF13597 NRDD: Anaerobic ribonucleoside-triphosphate reductase; PDB: 1HK8_A 1H78_A 1H7A_A 1H79_A 1H7B_A.
Probab=33.36 E-value=36 Score=41.94 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=32.2
Q ss_pred cCCcCcccccccHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPF-DCNESRLLNKQIFETIYYGALEAS 633 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y-~S~ea~~l~~~i~e~i~~~a~~aS 633 (998)
+++-..-||+.||++++..+|-.- .++|+.+|+.+|+++|...+-+.+
T Consensus 337 ~~~~~~tIG~iGL~Ea~~~~g~~~~~~~~~~~f~~~Vl~~m~~~~~~~~ 385 (546)
T PF13597_consen 337 LKNHFSTIGIIGLNEALQNFGGKHHESPEGREFALKVLEHMRDKADEFQ 385 (546)
T ss_dssp HTTTTSEEEEE-HHHHHHHH---------TS--HHHHHHHHHHHHHHHH
T ss_pred hcCeeEeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667899999999999888874 799999999999999998887665
No 89
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=24.21 E-value=69 Score=35.54 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=56.5
Q ss_pred cccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCcccccccCCCCCCHhhH
Q psy1689 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTPTDLWDW 380 (998)
Q Consensus 302 LGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W 380 (998)
+|.-||+.+|..+++..==+...-++.+|.+ ..++.|+|.| ||-.|++-.|... .|.|.. -.+|
T Consensus 53 l~~e~l~~~l~e~~i~llIDATHPyAa~iS~--------Na~~aake~gipy~r~eRP~~~~~---gd~~~~----V~d~ 117 (257)
T COG2099 53 LGAEGLAAFLREEGIDLLIDATHPYAARISQ--------NAARAAKETGIPYLRLERPPWAPN---GDNWIE----VADI 117 (257)
T ss_pred CCHHHHHHHHHHcCCCEEEECCChHHHHHHH--------HHHHHHHHhCCcEEEEECCccccC---CCceEE----ecCH
Confidence 7888999999999997654555556666654 3467899999 7888888887763 233321 2378
Q ss_pred HHHHHHHHhcCCCccccc
Q psy1689 381 AALKEKIAKHGVRNSLLI 398 (998)
Q Consensus 381 ~~Lr~~i~~~G~RNs~lt 398 (998)
+++-+.+++.| |+..+|
T Consensus 118 ~ea~~~~~~~~-~rVflt 134 (257)
T COG2099 118 EEAAEAAKQLG-RRVFLT 134 (257)
T ss_pred HHHHHHHhccC-CcEEEe
Confidence 88888888777 444444
Done!