Query psy1689
Match_columns 998
No_of_seqs 462 out of 2883
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:43:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hnc_A Ribonucleoside-diphosph 100.0 4E-128 1E-132 1168.0 46.3 521 70-597 270-792 (792)
2 3k8t_A Ribonucleoside-diphosph 100.0 9E-125 3E-129 1141.9 45.3 488 70-558 270-763 (888)
3 2wgh_A Ribonucleoside-diphosph 100.0 1E-119 3E-124 1089.8 44.3 472 70-542 197-670 (676)
4 3o0q_A Ribonucleoside-diphosph 100.0 2E-107 8E-112 973.0 40.0 440 70-548 185-639 (644)
5 2xap_A Ribonucleoside-diphosph 100.0 4E-105 1E-109 974.6 38.3 437 70-546 276-740 (761)
6 1peq_A Ribonucleoside-diphosph 100.0 5E-103 2E-107 949.2 33.8 430 70-544 229-700 (714)
7 3hnc_A Ribonucleoside-diphosph 100.0 1.2E-71 4.2E-76 674.8 25.2 294 586-998 496-789 (792)
8 1l1l_A Ribonucleoside triphosp 100.0 4E-71 1.4E-75 672.8 24.0 372 70-544 272-684 (739)
9 3k8t_A Ribonucleoside-diphosph 100.0 2.3E-68 7.8E-73 648.1 22.2 260 586-958 500-759 (888)
10 2wgh_A Ribonucleoside-diphosph 100.0 3.1E-63 1.1E-67 598.6 21.1 248 587-947 424-671 (676)
11 3o0q_A Ribonucleoside-diphosph 100.0 2E-62 6.9E-67 585.8 22.2 245 587-952 385-639 (644)
12 1peq_A Ribonucleoside-diphosph 100.0 1.1E-53 3.7E-58 518.3 16.4 235 587-948 463-700 (714)
13 2xap_A Ribonucleoside-diphosph 100.0 4.7E-53 1.6E-57 516.3 16.7 225 586-950 508-740 (761)
14 1l1l_A Ribonucleoside triphosp 100.0 8.2E-39 2.8E-43 389.4 2.0 153 782-947 528-683 (739)
15 1h7b_A Anaerobic ribonucleotid 93.2 0.55 1.9E-05 56.4 13.2 241 185-528 251-529 (605)
No 1
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=100.00 E-value=4.2e-128 Score=1168.01 Aligned_cols=521 Identities=69% Similarity=1.154 Sum_probs=446.3
Q ss_pred hhhhhHHHHHHHHhh-hcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689 70 SWGEKFDDLYKKYEA-EGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147 (998)
Q Consensus 70 s~g~~F~~lY~~~E~-~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~ 147 (998)
+....|.++|+.... ..++| +|+||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+
T Consensus 270 sG~vpfmk~~d~~~~~v~QgG~~R~GA~~vyL~~wHpDI~eFl~~K~~~g~e~~r~~~l~~sv~ipD~Fm~~v~~d~~w~ 349 (792)
T 3hnc_A 270 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 349 (792)
T ss_dssp CCSHHHHHHHHHHHHHCCCC------CEEEEECTTBTTHHHHTTSCC---------CCEEEEEEECHHHHHHHHTTCEEE
T ss_pred CCchhHHHHHHHHHHHHHhCCCccccceEEEecCCCccHHHHHHHhhccCcHhHhHhhCchhheeCHHHHHHHHcCCCEE
Confidence 456789999988864 45666 6899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
||+|+++|+|.++||++|+++|++++++|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus 350 Lf~P~~~p~L~~~yg~ef~~~Y~~~e~~g~~~k~v~AreLw~~I~~~~~etG~P~i~f~D~~N~~~~~~~~G~I~~SNlC 429 (792)
T 3hnc_A 350 LMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLC 429 (792)
T ss_dssp EBCTTTSTTGGGCCHHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHHSCSEEEEHHHHHHTCTTGGGCCCCCCCSS
T ss_pred EeCcccCccHHHHhhhHHHHHHHHHHhCCCceeEeeHHHHHHHHHHHHHHhCCCeeeehhhHHhcCCCCcCCeEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchH
Q psy1689 228 TEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307 (998)
Q Consensus 228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GL 307 (998)
+||+||++++++++||||||||++|+++ ++.||++.|+++|+++||+||+|||.+.||+|+++++++++|+||||+|||
T Consensus 430 ~EI~~~~~~~e~~vCNLgSiNL~~~v~~-~~~fD~~~l~~~v~~avr~Ld~vID~~~yP~~~~~~~~~~~R~IGLGvmGl 508 (792)
T 3hnc_A 430 TEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGL 508 (792)
T ss_dssp SCCCCCCBTTBCEEECEEEEEGGGGBCT-TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECH
T ss_pred ccccCCCCCCccceeechhccHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHhchhhhhHHHH
Confidence 9999999999999999999999999974 457999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387 (998)
Q Consensus 308 ad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i 387 (998)
||+|+++|++|+|+||++++++|||.|+++|++||++||+|+|+||.|++|+|++|.|+||.|...|...++|++||++|
T Consensus 509 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i 588 (792)
T 3hnc_A 509 ADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKI 588 (792)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCTTSCHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhccCCchhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467 (998)
Q Consensus 388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~ 467 (998)
++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||+
T Consensus 589 ~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~s~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~ 668 (792)
T 3hnc_A 589 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQS 668 (792)
T ss_dssp HHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCSCSEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTT
T ss_pred HHhccccccccccCCcchHHHHcCCCCccCcchhHHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeecccccccc
Q psy1689 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547 (998)
Q Consensus 468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~~~~ 547 (998)
+|.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++||||+|||||++++++++
T Consensus 669 i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~IDqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~ 748 (792)
T 3hnc_A 669 IPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPI 748 (792)
T ss_dssp CTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC------
T ss_pred CcCCCHHHHHHhhhHHhCCHHHHHHHHHHHcCcchhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHhHhhhhcccccchhhHHHHHhHHHHHHhhhhccCCcCccccccc
Q psy1689 548 QFTIDKTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQG 597 (998)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~g~~G 597 (998)
+||+|+..++...+.+.. . .......++++|+++|++-|+.|+|
T Consensus 749 ~~t~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~c~~c~~ 792 (792)
T 3hnc_A 749 QFTLNKEKLKDKEKVSKE---E---EEKERNTAAMVCSLENRDECLMCGS 792 (792)
T ss_dssp --------------------------------------------------
T ss_pred hhccchhhhccccccccc---c---cccccccccccCCCCCcccccccCC
Confidence 999997665532221100 0 1112234678999999999999875
No 2
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=100.00 E-value=8.7e-125 Score=1141.89 Aligned_cols=488 Identities=62% Similarity=1.084 Sum_probs=447.0
Q ss_pred hhhhhHHHHHHHHhh-hcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689 70 SWGEKFDDLYKKYEA-EGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147 (998)
Q Consensus 70 s~g~~F~~lY~~~E~-~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~ 147 (998)
+....|.++|+.... ..++| +|+||+|+||++|||||++||++|+++|+++.|++++|+||+|||+||++|++|++|+
T Consensus 270 sG~Vpfmkv~d~~~~~v~QgG~~RrGA~~vyL~vwHpDI~eFL~~K~~~g~e~~R~~~l~~sV~IpD~FMe~V~~d~~w~ 349 (888)
T 3k8t_A 270 NGLIPMIRVFNNTARYVDQGGNKRPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWT 349 (888)
T ss_dssp CCHHHHHHHHHHHHHHCCTTC---CCCEEEEECTTBTTHHHHTTTTCSSSCSTTCCTTEEEEEEECHHHHHHHHTTCEEE
T ss_pred CCcccHHHHHHHHHHHHHhCCCccccceeEEecCCCchHHHHHHHhhhcCchhhhhhhCeeeeeeCHHHHHHHhcCCCEE
Confidence 456789999998864 45666 7999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
||+|+++|+|.++||++|+++|++|+++|+. ++|+||+||++|++++|+||+|||+|+|++|++||++++|+|++||||
T Consensus 350 Lf~P~~~p~L~d~yG~eFe~~Y~~ye~~g~~-k~V~AreLw~~I~~~~~etG~P~i~f~D~iNr~n~~~~~G~I~~SNlC 428 (888)
T 3k8t_A 350 LFSPTSAPGLSDCYGDEFEALYTRYEKEGRG-KTIKAQKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVIKSSNLC 428 (888)
T ss_dssp EBCTTTSTTGGGCCHHHHHHHHHHHHHTTCS-EEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTTTTCCCCCCCTT
T ss_pred EeccccCccHhhhhchHHHHHHHHHHhcCCe-eEEEHHHHHHHHHHHHHHhCCCeEEehhHHHhcCCCccCCeEEEeccc
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCcceeeecccccccccCCC----CCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccc
Q psy1689 228 TEIVEYTSKDEVAVCNLASIALNMYINPA----DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIG 303 (998)
Q Consensus 228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~----~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLG 303 (998)
+||+||++++++++|||+||||++|++++ ++.||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||
T Consensus 429 ~EI~~~~~~~e~avCNLgSINL~~fv~~~~~~~~~~fD~~~l~~~v~~avR~LDnVID~n~yP~~~a~~~n~~~R~IGLG 508 (888)
T 3k8t_A 429 CEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLHEIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALG 508 (888)
T ss_dssp SCCCCCCBTTBCEEECEEEEEGGGGBC-----CCCCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEE
T ss_pred ccccCCCCCCCceEEecHHhhHHHHhccccccccccCCHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHccCCcccc
Confidence 99999999999999999999999999752 36799999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHH
Q psy1689 304 VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAAL 383 (998)
Q Consensus 304 v~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~L 383 (998)
+|||||+|+++|++|+|+||++|+++||+.|+++|++||++||+|+|+||.|++|+|++|.|++|.|...|...++|++|
T Consensus 509 vmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p~~~~dW~~L 588 (888)
T 3k8t_A 509 VQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTL 588 (888)
T ss_dssp EECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCCCCSSCHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccchhhccCCchhhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCC
Q psy1689 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNG 463 (998)
Q Consensus 384 r~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~G 463 (998)
|++|++||+|||+++|||||||||+|+|+|+||||+|+++|.|++.+|+|.++|++|+++|+++|+|++++++.|+.++|
T Consensus 589 re~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~fs~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~G 668 (888)
T 3k8t_A 589 RKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNG 668 (888)
T ss_dssp HHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCSCSBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTT
T ss_pred HHHHHhhCcccccccCCCCchhHHHhcCCCcccCcchhhhHhhhhccCceeeeCHHHHHHHHHcCCCcHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeecccc
Q psy1689 464 SIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 543 (998)
Q Consensus 464 sv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~ 543 (998)
+||++|.+|++++++|+|||||+|++||+|+|++|||||||||+|||+++++.++|.++|++||++||||+|||||++++
T Consensus 669 svq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~IDQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a 748 (888)
T 3k8t_A 669 SIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAA 748 (888)
T ss_dssp CCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC--
T ss_pred ceecCCCCCHHHHHHhhhHhhCCHHHHHHHHHHHcCcchhhccceEecCCCCHHHHHHHHHHHHHhCCCeEEEEecCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhHhHhhh
Q psy1689 544 ANAIQFTIDKTKMAN 558 (998)
Q Consensus 544 ~~~~~~~~~~~~~~~ 558 (998)
+++++||+|++.++.
T Consensus 749 ~~~~~~t~~~~~~~~ 763 (888)
T 3k8t_A 749 SAAIQFTIDQKIADQ 763 (888)
T ss_dssp ---------------
T ss_pred hhhhhhcccHHHHHh
Confidence 999999999776653
No 3
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-119 Score=1089.81 Aligned_cols=472 Identities=72% Similarity=1.199 Sum_probs=437.2
Q ss_pred hhhhhHHHHHHHHh-hhcccc-ccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCcee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVY-FRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWS 147 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g-~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~ 147 (998)
+....|.++|+... ...++| +||||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+
T Consensus 197 sG~vpfmk~~d~~~~~v~QgG~~RrGA~~~~l~~~HpDI~eFl~~K~~~g~e~~r~~~l~~sv~i~D~Fm~~v~~d~~w~ 276 (676)
T 2wgh_A 197 NGLVPMLRVYNNTARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWS 276 (676)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTSSCCCCEEEEECTTBTTHHHHTTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHTTCEEE
T ss_pred CCchhHHHHHHHHHHHHHhcCCccCCceeEEeCCCChhHHHHHHhhccccchhhhhhhcchhhccCHHHHHHHHcCCCeE
Confidence 45678999998886 445667 8999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeecCCc
Q psy1689 148 LMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLC 227 (998)
Q Consensus 148 Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~sNpC 227 (998)
||+|+++|+|.++||++|+++|.+++++|+..++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++||||
T Consensus 277 L~~P~~~~~l~~~yg~~f~~~Y~~~~~~~~~~k~v~Ar~L~~~I~~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~SNpC 356 (676)
T 2wgh_A 277 LMCPNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTIKCSNLC 356 (676)
T ss_dssp EBCTTTSTTGGGCCTHHHHHHHHHHHHTTCCSEEEEHHHHHHHHHHHHHHHSCCEEEEHHHHHHTCTTGGGCCCCCCCTT
T ss_pred EECcccccchhhhhchHHHHHHHHHHhCCcceeEeeHHHHHHHHHHHHHHHCCCeEEechhhhhcCCCCCCCcEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCccccchH
Q psy1689 228 TEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGL 307 (998)
Q Consensus 228 ~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv~GL 307 (998)
+||+||++++++++|||+||||++|+.. ++.||++.|+++|+++||+||+|||.+.||+|++++.++++|+||||+|||
T Consensus 357 ~EI~~~~~~~e~~~CNL~SiNL~~~v~~-~~~~D~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~~~R~IGlGv~Gl 435 (676)
T 2wgh_A 357 TEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTKVVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGL 435 (676)
T ss_dssp SCCCCCCBTTBCEEECEEEEEGGGGBCT-TSCBCHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCCEEEEECH
T ss_pred ccccccCCCCceeEEecccccHHHHhcc-cCCCCHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCCCceecHHHH
Confidence 9999999999999999999999999963 357999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHH
Q psy1689 308 ADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKI 387 (998)
Q Consensus 308 ad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i 387 (998)
||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.|++|.|...|...++|++||++|
T Consensus 436 ad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~~~~~dW~~Lr~~i 515 (676)
T 2wgh_A 436 ADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKI 515 (676)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCCCSSSCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChhhccCcchhhhhcCCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccc
Q psy1689 388 AKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQD 467 (998)
Q Consensus 388 ~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~ 467 (998)
++||+|||++||||||||||+|+|+|+||||+|+++|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++|+|++
T Consensus 516 ~~~G~RNs~l~aiaPTgTiS~i~g~s~gIeP~~s~~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~ 595 (676)
T 2wgh_A 516 AKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQS 595 (676)
T ss_dssp HHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCCCSBC---------CCBCHHHHHHHHHHTC-------------CCCTT
T ss_pred HHhCCccceeeeccCCcceeeecCCCCccCcccchheeEecccCceeecCHHHHHHHHHcCCChHHHHHHHHhcCCcEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCCCHHHHHHHHHHHHHcCCceEEEEeeccc
Q psy1689 468 IEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKP 542 (998)
Q Consensus 468 ~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~ 542 (998)
+|.+|++++++|+||+||+|++||+|||++|||||||||+|||+|+++.++|.++|++||++||||++||||++.
T Consensus 596 ~p~lp~~~~~~f~tA~ei~~~~~i~~~a~~Q~~iDqsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~ 670 (676)
T 2wgh_A 596 IPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRA 670 (676)
T ss_dssp CSSSCHHHHHHTCCTTSSCHHHHHHHHHHHHTTCSSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC-
T ss_pred CCCCCHHHHHHhCCHhhCCHHHHHHHHHHhCCCCccccceEEecCCCCHHHHHHHHHHHHHhCCCEEEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999975
No 4
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=100.00 E-value=2.2e-107 Score=973.03 Aligned_cols=440 Identities=23% Similarity=0.334 Sum_probs=398.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhc-CCcccccccccceeeecC---HHHHHHHHcCC
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKN-TGKEEFRARDLFYGLWIP---DEFMRRVESDA 144 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~-~g~~~~r~~~l~~sV~I~---D~Fm~~v~~d~ 144 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|++ .|+ .|.+++|+||+|| |+||++|++|+
T Consensus 185 sG~vpfmk~~d~~~~~v~QgG~RrGA~~~yL~~~HpDI~eFl~~K~~n~g~--~~~~~~n~sv~i~~~pD~Fm~~v~~d~ 262 (644)
T 3o0q_A 185 SGPVSFMHVFNSAISVVKQGSRRRGALMGILNINHPDIEEFIDAKKENTGE--AVLNFFNLSVGFPMDKKEILKLYEEDG 262 (644)
T ss_dssp CCHHHHHHHHHHHHTTCEETTTEECCEEEEEETTSTTHHHHHTCC---------CCTTEEEEEECCSCHHHHHHHHHTTC
T ss_pred CCcccHHHHHHHHHHHHHcCCccccceEEEecCCCcCHHHHHHHhccccCc--cceeecceeEEeCCCHHHHHHHHHcCC
Confidence 45689999999886 45677899999999999999999999999996 443 4788999999999 99999999999
Q ss_pred ceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCceeec
Q psy1689 145 QWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCS 224 (998)
Q Consensus 145 ~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~~s 224 (998)
+|+||+| +|+.+++|+||+||++|++++|+||+|||+|+|++|++||+++.|+|++|
T Consensus 263 ~w~L~~P-----------------------~g~~~~~v~Ar~L~~~I~~~~~etG~Pgi~f~D~~N~~~~~~~~g~I~~S 319 (644)
T 3o0q_A 263 ELELSHP-----------------------RSTIRKKVKIRELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKINST 319 (644)
T ss_dssp EEEECCT-----------------------TCCCCEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHTCTTTTTSCEEEE
T ss_pred CeEeECC-----------------------CCceeeeecHHHHHHHHHHHHHHHCCCeEEEhhhHHhcCCCccCCceeec
Confidence 9999999 25678999999999999999999999999999999999999999999999
Q ss_pred CCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHhhcCCCcccc
Q psy1689 225 NLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGV 304 (998)
Q Consensus 225 NpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~~~R~IGLGv 304 (998)
|||+||++++ .++|||+||||++|+.+ +.|||+.|+++|+++||+||+|||.+.||+|++++.++++|+||||+
T Consensus 320 NlC~Ei~l~~----~~~CNLgSiNL~~~v~~--~~fD~~~l~~~v~~avr~LD~VId~~~~P~~~~~~~~~~~R~IGLGv 393 (644)
T 3o0q_A 320 NPCGEIGLSD----YEACNLGSIDVAKFYNN--GFVDLEALQELVQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGI 393 (644)
T ss_dssp CTTSCCEEET----TCEEEEEEEEGGGGEET--TEECHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHCCEEEEE
T ss_pred cCccccccCC----CCceEhHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHhhcCccccch
Confidence 9999999874 36999999999999973 46999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCc--cCcccccccCCCCCCHhhHHH
Q psy1689 305 QGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS--QGILQYDMWGVTPTDLWDWAA 382 (998)
Q Consensus 305 ~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~--~G~l~~d~~~~~p~~~~~W~~ 382 (998)
|||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|+ +|.++++.+. ..+|++
T Consensus 394 ~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~~-----~~~W~~ 468 (644)
T 3o0q_A 394 MGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMGM-----SNYDDE 468 (644)
T ss_dssp ECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGSHHHHSSSCCSSCCCS-----CTTHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccCCcccccccc-----cccHHH
Confidence 999999999999999999999999999999999999999999999999999999994 6777766542 468999
Q ss_pred HHHHHH--hcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc--ccc---eEEeChhHHHHHHHcCCCcHHHH
Q psy1689 383 LKEKIA--KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL--SGE---FQVVNHHLLRDLVELGLWDDNMK 455 (998)
Q Consensus 383 Lr~~i~--~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~--~G~---~~~vn~~l~~~L~~~g~~~~~~~ 455 (998)
||++|+ +||+|||+++|||||||||+|+|+|+||||+|+++|.|++. +|+ |.++|++|.++|+++ |+++++
T Consensus 469 Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~ 546 (644)
T 3o0q_A 469 IREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIE 546 (644)
T ss_dssp HHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCCCSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHhcccCceehheeccCCCcchhhhcCCCCcccccccceEEEEeeccCCCccceeeeCHHHHHHHHHh--ccHHHH
Confidence 999999 99999999999999999999999999999999999999987 776 899999999999988 778888
Q ss_pred HHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecC-CCHHHHHHHHHHHHHcCCceE
Q psy1689 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTG 534 (998)
Q Consensus 456 ~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~-~t~~~i~~~~~~Awk~GlKt~ 534 (998)
+.|. .+|++|++|.+|++++.+|+||+||+|++||+|||++|||||||||+|||+|+ .+.++|.++|++||++||||+
T Consensus 547 ~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~ 625 (644)
T 3o0q_A 547 KELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGI 625 (644)
T ss_dssp HHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHHHHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEE
T ss_pred HHHH-hcCCccccccCCHHHHhHcccHHhCCHHHHHHHHHHHCccccccccceeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 8887 47999999999999999999999999999999999999999999999999984 799999999999999999999
Q ss_pred EEEeeccccccccc
Q psy1689 535 MYYLRTKPAANAIQ 548 (998)
Q Consensus 535 ~yY~R~~~~~~~~~ 548 (998)
|||+..++..++..
T Consensus 626 t~YR~gs~~~qvl~ 639 (644)
T 3o0q_A 626 TVYRDGSLQTQVLT 639 (644)
T ss_dssp EEEETTCC------
T ss_pred EEECCCCccccccc
Confidence 99977777776654
No 5
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=100.00 E-value=4.1e-105 Score=974.58 Aligned_cols=437 Identities=28% Similarity=0.464 Sum_probs=408.8
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++|+... ...++|+||||+|+||++|||||++||++|+++|++++|++++|+||+|||+||++|++|++|+|
T Consensus 276 sG~vpfmk~~d~~~~~v~QgG~RrGA~~vyL~~~HpDI~eFl~~K~~~g~e~~r~~~l~~~v~i~D~Fm~~v~~d~~w~L 355 (761)
T 2xap_A 276 TGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITL 355 (761)
T ss_dssp SCHHHHHHHHHHHHTTTSTTSSSSCEEEEEEETTBTTHHHHHTTTCSSSCGGGCCTTSEEEEEECHHHHHHHHHTCEEEE
T ss_pred CCcHHHHHHHHHHHHHHHccCCcCCceeEEecCCCchHHHHHHHhcccCcchhhhhhcccccccCHHHHHHHHcCCCeEE
Confidence 45678999998886 44677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhh---chhHHHHHHHHHHcCc-ceeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCC-CCCCceee
Q psy1689 149 MCPNTCRGLSDSW---GEKFDDLYKKYEAEGK-FIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ-QNLGTIKC 223 (998)
Q Consensus 149 f~P~~~~~L~~~y---g~~F~~~Y~~~e~~g~-~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~-~~~g~I~~ 223 (998)
|+|+++++|+++| |++|+++|.++++++. .+++|+||+||++|++++|+||+|||+|+|++|++||+ ++.|+|++
T Consensus 356 f~P~~~~~l~~~~~~~~~~f~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~~~~g~I~~ 435 (761)
T 2xap_A 356 FSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQ 435 (761)
T ss_dssp BCGGGSTTHHHHHHHCHHHHHHHHHHHHHCTTSCCEEEEHHHHHHHHHHHHHHHSCEEEEETTHHHHSSSBCTTTSCBCC
T ss_pred ECcccccchhhccchhhHHHHHHHHHHHhCCCceeEEeeHHHHHHHHHHHHHHhCCceEEecHHHHhcCCcccccCeEEe
Confidence 9999999999999 9999999999999987 67899999999999999999999999999999999998 67899999
Q ss_pred cCCccceecccCC--------CCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHh
Q psy1689 224 SNLCTEIVEYTSK--------DEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNM 295 (998)
Q Consensus 224 sNpC~EI~l~~~~--------~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~p~~e~~~~~~ 295 (998)
||||+||+||+.| +++++|||+||||++|+ |++.|+++|+++||+||+|||.+.||+|++++.++
T Consensus 436 SNlC~Ei~l~~~p~~~~~~~~ge~~~CNL~SiNL~~~~-------d~~~l~~~v~~avr~Ld~vid~~~yp~~~~~~~~~ 508 (761)
T 2xap_A 436 SNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAIN-------NLDELEELAILAVRALDALLDYQDYPIPAAKRGAM 508 (761)
T ss_dssp CCTTSCCCCBCBCCSSTTCTTCBCEECEEEEEETTTCS-------SGGGHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred ecccccccccCCcccccccccCceeecccceeeHHHhc-------CHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 9999999999876 78889999999999994 78999999999999999999999999999999999
Q ss_pred hcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCccCcccccccCCC--
Q psy1689 296 RHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVT-- 373 (998)
Q Consensus 296 ~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~~f~~S~~~~G~l~~d~~~~~-- 373 (998)
++|+||||+|||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+|+||.|++|+|++|.++++.|...
T Consensus 509 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~~ 588 (761)
T 2xap_A 509 GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLD 588 (761)
T ss_dssp HHCCEEEEEECHHHHHHHTTCCSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGGG
T ss_pred hcCccccCcccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCcchhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred ----CCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCC
Q psy1689 374 ----PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 449 (998)
Q Consensus 374 ----p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~ 449 (998)
+...++|++||++|++||+|||++||||||||||+|+|+|+||||+|+++|.|++..|.+.++++.+.
T Consensus 589 ~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~s~gIeP~~~~~~~r~~~~G~~~~~~p~~~-------- 660 (761)
T 2xap_A 589 TIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYE-------- 660 (761)
T ss_dssp GTCCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSSSEEEECCTTSCEEEECTTHH--------
T ss_pred hhcCcchhhhHHHHHHHHHHhCcccceeeecCCCcceeeecCCCCeecccccceeeEecccCceeeeCCCHH--------
Confidence 23458999999999999999999999999999999999999999999999999999998877766541
Q ss_pred CcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCC-hHHHHHHHHHhCCccccccceeEeecC-------CCHHHHHH
Q psy1689 450 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADRGAFIDQSQSLNIYMAE-------INYAKMSS 521 (998)
Q Consensus 450 ~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~-~~~~I~m~a~~Q~~VDqs~S~tl~l~~-------~t~~~i~~ 521 (998)
+++.+|+|||||+ |++||+|||++|||||||||+|||+++ .+.++|.+
T Consensus 661 ------------------------~l~~~y~ta~ei~~~~~~i~m~A~~Q~~iDqsiS~tl~~~~~~~~~~~~t~~dl~~ 716 (761)
T 2xap_A 661 ------------------------HLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLK 716 (761)
T ss_dssp ------------------------HHTTTCCCGGGCSCSHHHHHHHHHHHTTCSSCBCCCEEECGGGSGGGCEEHHHHHH
T ss_pred ------------------------HHHHHHhHHHcccCHHHHHHHHHHHcCcccccccceEEECCcccccCCCCHHHHHH
Confidence 3456899999999 999999999999999999999999974 46899999
Q ss_pred HHHHHHHcCCceEEEEeeccccccc
Q psy1689 522 MHFHGWKLGLKTGMYYLRTKPAANA 546 (998)
Q Consensus 522 ~~~~Awk~GlKt~~yY~R~~~~~~~ 546 (998)
+|++||++|||| +||+|++.++..
T Consensus 717 ~y~~Awk~GlKT-~Yy~rsr~~~~~ 740 (761)
T 2xap_A 717 DLLTAYKFGVKT-LYXQNTRDGAED 740 (761)
T ss_dssp HHHHHHHTTCCE-ECCEEECCC---
T ss_pred HHHHHHHcCCCE-ECCCCCcchhhh
Confidence 999999999998 899999987655
No 6
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=100.00 E-value=5.4e-103 Score=949.20 Aligned_cols=430 Identities=24% Similarity=0.418 Sum_probs=381.5
Q ss_pred hhhhhHHHHHHHHh-hhccccccccceEEEecCCcccHHHHHHhhhcCCcccccccccceeeecCHHHHHHHHcCCceee
Q psy1689 70 SWGEKFDDLYKKYE-AEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 148 (998)
Q Consensus 70 s~g~~F~~lY~~~E-~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~~l~~sV~I~D~Fm~~v~~d~~W~L 148 (998)
+....|.++++... ...++|+||||+|+||++|||||++||++|+++|++..|++++|+||+|||+||++|++|++|+|
T Consensus 229 sG~vpfmk~~d~~~~~v~QgG~RrGA~~vyL~~~HpDI~eFl~~K~~~gde~~r~~~l~~~v~ipD~Fm~~v~~d~~w~L 308 (714)
T 1peq_A 229 SGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMAL 308 (714)
T ss_dssp CCSHHHHHHHHHHHHHC------CCEEEEEEETTSTTHHHHHGGGC--------CCSCEEEEECCSHHHHHHHTTCEEEE
T ss_pred CChhHHHHHHHHHHHHHhccCccCCceeEEecCCCchHHHHHHHcccccchhhhhhhhhhhhccCHHHHHHHHcCCCeee
Confidence 44578999998875 45677899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCcchhhchhH-----HHHHHHHHHcCcc-eeeecHHHHHHHHHHHHHhhCCceeEehhhhhhhCCCCCCCcee
Q psy1689 149 MCPNTCRGLSDSWGEKF-----DDLYKKYEAEGKF-IRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222 (998)
Q Consensus 149 f~P~~~~~L~~~yg~~F-----~~~Y~~~e~~g~~-~k~v~Ar~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~~~~~g~I~ 222 (998)
|+|.++ .++||.+| ++.|+++++++.. +++|+||+||++|++++|+||+|||+|+|++|++||++ |+|+
T Consensus 309 f~P~~~---~~~~G~~~~~~~~~~~Y~~~~~~~~i~~~~v~Ar~L~~~I~~~~~etG~P~i~f~D~~N~~~~~~--g~I~ 383 (714)
T 1peq_A 309 FSPYDI---QRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIA--GRIN 383 (714)
T ss_dssp ECHHHH---HHHHSSCGGGSCHHHHHHHHHHCTTSCEEEEEHHHHHHHHHHHHHHHSCCEEECHHHHHHHCCSS--SCCC
T ss_pred eCCccc---hhhcCccccccchHHHHHHHHhCCCeeeEEeeHHHHHHHHHHHHHHhCCCeEEEhhhhhhcCCCC--Ceee
Confidence 999886 46777654 6789999988764 78999999999999999999999999999999999998 9999
Q ss_pred ecCCccceecccCCCC------------cceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHHhhhcCCC-cHHH
Q psy1689 223 CSNLCTEIVEYTSKDE------------VAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEE 289 (998)
Q Consensus 223 ~sNpC~EI~l~~~~~~------------~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~vId~~~~-p~~e 289 (998)
+||||+||+|+++|++ .++|||+||||++|++ ++.|+++|+++||+||+|||.+.| |+|+
T Consensus 384 ~SNlC~EI~~~~~p~~~~~~~~~~~~G~~~~CNL~SiNL~~~v~-------~~~l~~~v~~avr~Ld~Vid~~~~~~~p~ 456 (714)
T 1peq_A 384 MSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMD-------SPDIGRTVETAIRGLTAVSDMSHIRSVPS 456 (714)
T ss_dssp CCCTTSCCCCCCCCCEECTTSCEEECCCCEECEEEEEEHHHHHT-------CSCHHHHHHHHHHHHHHHHHTCCCTTCHH
T ss_pred ecCcccceeccCCcccccccccccccCCcCcccchhhhHHHhcC-------HHHHHHHHHHHHHHHHHHHhhhccCCCHH
Confidence 9999999999986642 3799999999999985 357999999999999999999776 7999
Q ss_pred HHHHHhhcCCCccccchHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCcCccCccccc
Q psy1689 290 ARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYD 368 (998)
Q Consensus 290 ~~~~~~~~R~IGLGv~GLad~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G-~f~~f~~S~~~~G~l~~d 368 (998)
++++++++|+||||+|||||+|+++|++|+|+||++++++||+.|+++|++||++||+|+| +||.|++|+|++|.+ |+
T Consensus 457 ~~~~~~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~ 535 (714)
T 1peq_A 457 IAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FT 535 (714)
T ss_dssp HHHHHHHHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HH
T ss_pred HHHHHHhcCCeEEeHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccChhhccch-hh
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999987 55
Q ss_pred cc-------------------CCCCCCHhhHHHHHHHHHhcCCCcccccccCCccchhhhcCCcccccccccceEEEEcc
Q psy1689 369 MW-------------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL 429 (998)
Q Consensus 369 ~~-------------------~~~p~~~~~W~~Lr~~i~~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~ 429 (998)
.| ...+...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+++|+|++.
T Consensus 536 ~~~~~~~~p~~~~v~~l~~~~~~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s~~~~r~~~ 615 (714)
T 1peq_A 536 QYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEG 615 (714)
T ss_dssp HHHSSCCSCSSHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSCSEEEECCS
T ss_pred hccccccCcccHHHHHHhhhcCCCCcchhhHHHHHHHHHHhCCchhheeeecCCCcchhhcCCCCcccccccceeEEecc
Confidence 33 12233578999999999999999999999999999999999999999999999999998
Q ss_pred c-cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCCCChhhhhhcccccCCChHHHHHHHHHhCCcccccccee
Q psy1689 430 S-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLN 508 (998)
Q Consensus 430 ~-G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~t 508 (998)
+ |++.++|+ .+|++.+++|+|||||+|++||+|+|++|||||||||+|
T Consensus 616 ~~g~~~~~~p-------------------------------~l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~iDqsiS~t 664 (714)
T 1peq_A 616 KTGRVYYPAP-------------------------------FMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLT 664 (714)
T ss_dssp TTSCEEEECT-------------------------------TCCTTSGGGCCCHHHHCHHHHHHHHHHHHTTCSSCBCCC
T ss_pred cCCcEEEeCC-------------------------------ccchhhHhhhCcHhhCCHHHHHHHHHHHcCcccccccce
Confidence 7 88877764 345667789999999999999999999999999999999
Q ss_pred EeecC-CCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 509 IYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 509 l~l~~-~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
||+|+ .+.++|.++|++||++|||| +||+|+++.+
T Consensus 665 l~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~ 700 (714)
T 1peq_A 665 LFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700 (714)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC-
T ss_pred EEeCCCCCHHHHHHHHHHHHHhCCCE-EEEccccccc
Confidence 99997 59999999999999999999 8999999654
No 7
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase, ribonucleotide reductase, allosteric enzyme, binding, DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB: 3hnd_A* 3hne_A* 3hnf_A*
Probab=100.00 E-value=1.2e-71 Score=674.82 Aligned_cols=294 Identities=71% Similarity=1.150 Sum_probs=239.2
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+|||+|++++
T Consensus 496 ~~~R~IGLGvmGlad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLAkE~G~f~~f~~S~~~~G~~~~d~~~~~~ 575 (792)
T 3hnc_A 496 KRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP 575 (792)
T ss_dssp HHHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCC
T ss_pred HHhchhhhhHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccchhhccCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 576 -------------------------------------------------------------------------------- 575 (792)
T 3hnc_A 576 -------------------------------------------------------------------------------- 575 (792)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 576 ---------------------------------~~~~dW~~Lr~~i~~~GlRNs~l~AiAPTgS~S~i~g~t~gIEP~~s 622 (792)
T 3hnc_A 576 ---------------------------------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTS 622 (792)
T ss_dssp ---------------------------------CTTSCHHHHHHHHHHHCCSCSCCBCCCCCHHHHHHHTCCCTTCCCSC
T ss_pred ---------------------------------hhhhhHHHHHHHHHHhccccccccccCCcchHHHHcCCCCccCcchh
Confidence 13468999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
++|+|++.+|+|.++|++|+++|+++|+|+++++++|+.++||||+++.||++++++|+|||||+|++||+|||++||||
T Consensus 623 ~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~e~~~~~i~~~~Gsvq~i~~lp~~~~~~y~tA~eI~~~~~I~m~A~~Q~~I 702 (792)
T 3hnc_A 623 NIYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFI 702 (792)
T ss_dssp SEEEEEETTEEEEEECHHHHHHHHHTTCCCHHHHHHHHHTTTCCTTCTTSCHHHHHHTCCTTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCceEeeCHHHHHHHHHcCCCcHHHHHHHHhcCCCcccCcCCCHHHHHHhhhHHhCCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhhhhhhcccCCCccchhhhhhhHHHHhhc
Q psy1689 906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985 (998)
Q Consensus 906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 985 (998)
|||||+|||||+++.+||.++|++|||+||||+|||+|+++++++++||+++...... ..... .+. ......++
T Consensus 703 Dqs~S~tl~~~~~t~~~l~~~y~~Awk~GlKt~~YY~Rs~~a~~~~~~t~~~~~~~~~-~~~~~---~~~--~~~~~~~~ 776 (792)
T 3hnc_A 703 DQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDK-EKVSK---EEE--EKERNTAA 776 (792)
T ss_dssp SSCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC----------------------------------------
T ss_pred hhhccceeecCCCCHHHHHHHHHHHHHhCCCeEEEEecccchhhhhhhccchhhhccc-ccccc---ccc--cccccccc
Confidence 9999999999999999999999999999999999999999999999999995543321 11000 000 11223577
Q ss_pred ccccCCCcccccC
Q psy1689 986 MICRRDNKEDCLK 998 (998)
Q Consensus 986 ~~~~~~~~~~~~~ 998 (998)
+.|+++|+|+|+.
T Consensus 777 ~~~~~~~~~~c~~ 789 (792)
T 3hnc_A 777 MVCSLENRDECLM 789 (792)
T ss_dssp -------------
T ss_pred ccCCCCCcccccc
Confidence 9999999999974
No 8
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=100.00 E-value=4e-71 Score=672.75 Aligned_cols=372 Identities=16% Similarity=0.152 Sum_probs=302.8
Q ss_pred hhhhhHHHHHHHH-------------------------hhhccccccccceEEEecCCcccHHHHHHhhhcCCccccccc
Q psy1689 70 SWGEKFDDLYKKY-------------------------EAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRAR 124 (998)
Q Consensus 70 s~g~~F~~lY~~~-------------------------E~~~~~g~RrgA~~~~l~~wHpDI~~Fi~~K~~~g~~~~r~~ 124 (998)
+....|.++|+.. ....++|+||||.|+|| ||||++||++|+++|+....-+
T Consensus 272 sG~vpf~k~~~~~~~i~~~~~g~~l~~~d~~di~~~i~~~V~QGG~RrGA~m~~l---~pDi~eFi~~K~~~g~~~~~~~ 348 (739)
T 1l1l_A 272 SGPMPLISMLLDVNEVLNNKAGGRLTAVDAADICNLIGKAVVAGNVRRSAELALG---SNDDQDFISMKQDQEKLMHHRW 348 (739)
T ss_dssp CCSHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHTTC----CEEEEE---ETTCHHHHHGGGCHHHHHHTGG
T ss_pred CCcHHHHHHHHHHHHHhhhhcccccccchhhhhhHHHHHHHhcCCccccceEEEE---CccHHHHHHhCcccchhhcccc
Confidence 4567788888664 23456789999999996 6999999999998875432222
Q ss_pred ccceeeecCHHHHHHHHcCCceeeeCCCCCCCcchhhchhHHHHHHHHHHcCcceeeecHHHHHHHHHHHHHhhCCceeE
Q psy1689 125 DLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204 (998)
Q Consensus 125 ~l~~sV~I~D~Fm~~v~~d~~W~Lf~P~~~~~L~~~yg~~F~~~Y~~~e~~g~~~k~v~Ar~Lw~~I~~~a~~tG~Pgl~ 204 (998)
.+|+||+|||+|| +|++|++++|+||+|||+
T Consensus 349 ~~n~Sv~v~D~Fm-------------------------------------------------~~~~I~~~~~etGePgi~ 379 (739)
T 1l1l_A 349 ASNNSVAVDSAFS-------------------------------------------------GYQPIAAGIRENGEPGIV 379 (739)
T ss_dssp GEEEEEEECTTCC-------------------------------------------------CHHHHHHHHHHHSCCEEE
T ss_pred ccCceeeeCHHHH-------------------------------------------------HHHHHHHHHHHcCCCeeE
Confidence 3799999999998 188999999999999999
Q ss_pred ehhhhhhh------CCCCCCCceeecCCccceecccCCCCcceeeecccccccccCCCCCCCChhHHHHHHHHHHHHHHH
Q psy1689 205 YKDACNRK------SNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNK 278 (998)
Q Consensus 205 f~D~~Nr~------~~~~~~g~I~~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~~~~~fD~~~l~~~v~~avr~LD~ 278 (998)
|+|++|++ +|+++.|+|++||||+||+|++. ++|||+||| .|+. +.||++ |+++|+++||+||+
T Consensus 380 f~D~~N~~~~~~~~~~~~~~g~I~~SNpC~EI~l~~~----~~CNL~Sin--~~v~---~~~d~~-l~~~v~~avr~Ldn 449 (739)
T 1l1l_A 380 NLDLSKNYGRIVDGYQAGIDGDVEGTNPCGEISLANG----EPCNLFEVF--PLIA---EEQGWD-LQEVFALAARYAKR 449 (739)
T ss_dssp EHHHHHHCSSGGGCCCTTTTTTEEEECTTCCSEEETT----CBCCEEEEC--HHHH---HHTTCC-HHHHHHHHHHHHHH
T ss_pred echhhhccccccccCCcccCccEEecCcceeeecccC----Cccchhhhh--hhcc---ccccHH-HHHHHHHHHHHHHh
Confidence 99999997 46678999999999999999853 689999999 5653 247887 99999999999999
Q ss_pred hhhcCCCcHHHHHHHHhhcCCCccccchHHHHHH-HcCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1689 279 IIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI-QMRLPF----DCNESRLLNKQIFETIYYGALEASCEIAARDGPYQ 353 (998)
Q Consensus 279 vId~~~~p~~e~~~~~~~~R~IGLGv~GLad~L~-~lgl~Y----~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~f~ 353 (998)
| |++.||+|++++.++++|+||||+|||||+|+ ++|++| +|.+|. +| +|+|+++
T Consensus 450 V-d~~~yp~~~~~~~~~~~R~IGlGv~Glad~L~~~~gi~Y~~~y~s~~a~-------------------el-~e~g~~~ 508 (739)
T 1l1l_A 450 V-TFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDP-------------------ET-HEAIKVP 508 (739)
T ss_dssp H-TTSCCSCHHHHHHHHHHCCCEEEECSHHHHHHHHHSSCSEEEEEEEECT-------------------TT-CCEEEEE
T ss_pred h-hhccCCcHHHHHHHHhCCccccccccHHHHHHHHhCCCccccccCHHHH-------------------HH-hhhcCcc
Confidence 9 99999999999999999999999999999999 899997 333222 12 2445555
Q ss_pred CCCCCc--CccCcccccccCCCCCCHhhHHHHHHHHHhcCCCcc-cccccCCccchhhhcCCcccccccccceEEEEccc
Q psy1689 354 TYEGSP--VSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNS-LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLS 430 (998)
Q Consensus 354 ~f~~S~--~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~~~G~RNs-~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~ 430 (998)
.|+++. +.++.+.. ....+|+. +++||+||+ ++||||||||||+|+|+|+||||+|+++|.|++
T Consensus 509 ~~~~~~~~~~~~~~~~-------~~~~~w~~----~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~-- 575 (739)
T 1l1l_A 509 VYDKRAIKMVDQLYKA-------VVKADQDY----SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI-- 575 (739)
T ss_dssp EECHHHHHHHHHHHHH-------HHHHHHHH----HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE--
T ss_pred ccCHHHHHHHHHHHHH-------HHHHHHHH----HHHhCCCChhheEEECCCccHHHhcCCCCcccccceeeEEEEe--
Confidence 444210 01111100 01235654 778999998 999999999999999999999999999999987
Q ss_pred cceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCcccccCC-CChhhhhhcccccCCChHHHHHHHHHhCC-cccccccee
Q psy1689 431 GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEG-IPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLN 508 (998)
Q Consensus 431 G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~~~-lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~VDqs~S~t 508 (998)
+|.++|++ +++|+++|||+++ .+..++|+|+++|. .|++.+.+|+||+||+|++||+|||++|+ |||||||+|
T Consensus 576 -~~~~~n~~-~~~l~~~g~~~~~---~i~~~~g~v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~T 650 (739)
T 1l1l_A 576 -RFQDSDPL-LPALKACGYRTEA---DIYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCT 650 (739)
T ss_dssp -EEETTCTH-HHHHHHTTCEEEE---CSSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCE
T ss_pred -eecccchH-HHHHHHcCCCchH---HHhhcCCceeeccccCchhhhhhcccHHhCCHHHHHHHHHHhccccccccccee
Confidence 47788886 5999999999875 44567899999886 57788899999999999999999999999 699999999
Q ss_pred EeecCCCHHHHHHHHHHHHHcCCceEEEEeeccccc
Q psy1689 509 IYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544 (998)
Q Consensus 509 l~l~~~t~~~i~~~~~~Awk~GlKt~~yY~R~~~~~ 544 (998)
||+++...++|.++ ++||+.|||| +||+|...++
T Consensus 651 i~~~~~~~~~l~~l-~~awk~GlK~-~yylR~~~~t 684 (739)
T 1l1l_A 651 ITFQDSEGDQVESL-LRQYRFITKS-TSLLPYFGGS 684 (739)
T ss_dssp EEECGGGGGGHHHH-HHHTTTTCSE-EEEEECCCCC
T ss_pred EEeCCchHHHHHHH-HHHHHhCCcE-EEEecCCCcc
Confidence 99997667899998 6799999998 7888877654
No 9
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3rsr_A* 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Probab=100.00 E-value=2.3e-68 Score=648.11 Aligned_cols=260 Identities=65% Similarity=1.107 Sum_probs=229.9
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
...|+||||+|||||+|++|||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.||||+|+.++
T Consensus 500 ~~~R~IGLGvmGlad~L~~lgi~Y~S~eA~~l~~~i~e~I~~~A~~AS~eLAkErG~fp~F~~S~~~~G~l~~d~~~~~p 579 (888)
T 3k8t_A 500 MRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKP 579 (888)
T ss_dssp HHHCCCEEEEECHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSGGGGTCCHHHHTTCCC
T ss_pred HccCCccccHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhccccchhhccCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
T Consensus 580 -------------------------------------------------------------------------------- 579 (888)
T 3k8t_A 580 -------------------------------------------------------------------------------- 579 (888)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
...++|++||++|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 580 ---------------------------------~~~~dW~~Lre~I~k~GlRNs~llAiAPTgSiS~I~g~s~sIEP~fs 626 (888)
T 3k8t_A 580 ---------------------------------YGMWDWDTLRKDIMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTS 626 (888)
T ss_dssp ---------------------------------CCSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCSC
T ss_pred ---------------------------------hhhccHHHHHHHHHhhCcccccccCCCCchhHHHhcCCCcccCcchh
Confidence 12468999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCcc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFI 905 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~i 905 (998)
|+|+|++.+|+|.++|++|+++|+++|+|++++++.|+.++||||+++.+|++++++|+|||||+|++||+|||++||||
T Consensus 627 ~~y~R~~~~G~~~vvN~~l~~~L~~~g~~~~~~~~~i~~~~Gsvq~ip~lp~~~k~~f~tA~eI~~~~~I~m~A~~Q~~I 706 (888)
T 3k8t_A 627 NMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYI 706 (888)
T ss_dssp SBC---------CCBCHHHHHHHHHTTCCSHHHHHHHHTTTTCCTTCTTSCHHHHHHTCCGGGSCHHHHHHHHHHHHTTC
T ss_pred hhHhhhhccCceeeeCHHHHHHHHHcCCCcHHHHHHHHhcCCceecCCCCCHHHHHHhhhHhhCCHHHHHHHHHHHcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchhhhhhhh
Q psy1689 906 DQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 958 (998)
Q Consensus 906 DqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~~~~~~~ 958 (998)
|||||+|||+|+++.+||.++|++|||+||||+|||+|+++++++++||+++.
T Consensus 707 DQs~S~tl~~~~~t~~dl~~~y~~Awk~GLKt~~YY~Rt~~a~~~~~~t~~~~ 759 (888)
T 3k8t_A 707 DQSHSLNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQK 759 (888)
T ss_dssp SSCCCCCEECSSCCHHHHHHHHHHHHHHTCSEEESCEECC-------------
T ss_pred hhhccceEecCCCCHHHHHHHHHHHHHhCCCeEEEEecCcchhhhhhhcccHH
Confidence 99999999999999999999999999999999999999999999999999964
No 10
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA replication, allosteric enzyme, nucleotide-binding, cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-63 Score=598.56 Aligned_cols=248 Identities=76% Similarity=1.211 Sum_probs=215.9
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCCc
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPT 666 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~~ 666 (998)
.+|+||||+|||||+|+++|+||+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|++|.||||+|.+++
T Consensus 424 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~G~~~~d~~~~~~- 502 (676)
T 2wgh_A 424 RHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTP- 502 (676)
T ss_dssp HHCCCEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCTTSSGGGTCCHHHHTTCCC-
T ss_pred cCCCceecHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccChhhccCcchhhhhcCC-
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999875422
Q ss_pred cchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHHH
Q psy1689 667 DLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIM 746 (998)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 746 (998)
T Consensus 503 -------------------------------------------------------------------------------- 502 (676)
T 2wgh_A 503 -------------------------------------------------------------------------------- 502 (676)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCccccccccc
Q psy1689 747 KNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSN 826 (998)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a~ 826 (998)
.+.++|++||++|++||+|||+++|||||||||+|+|+|+||||+|++
T Consensus 503 --------------------------------~~~~dW~~Lr~~i~~~G~RNs~l~aiaPTgTiS~i~g~s~gIeP~~s~ 550 (676)
T 2wgh_A 503 --------------------------------TDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSN 550 (676)
T ss_dssp --------------------------------CSSSCHHHHHHHHHHHCCSCSCCBCCCCCTTHHHHHTCCCTTCCCCCS
T ss_pred --------------------------------CchhhHHHHHHHHHHhCCccceeeeccCCcceeeecCCCCccCcccch
Confidence 134689999999999999999999999999999999999999999999
Q ss_pred eEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCccc
Q psy1689 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 906 (998)
Q Consensus 827 ~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~iD 906 (998)
+|+|++.+|+|+++|++|+++|+++|+|+++++++|+.++||||+++.+|++++++|+|||||+|++||+|||++|||||
T Consensus 551 ~y~R~~~~g~~~~vn~~l~~~L~~~G~~~e~~~~~i~~~~Gsv~~~p~lp~~~~~~f~tA~ei~~~~~i~~~a~~Q~~iD 630 (676)
T 2wgh_A 551 IYTRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFID 630 (676)
T ss_dssp BC---------CCBCHHHHHHHHHHTC-------------CCCTTCSSSCHHHHHHTCCTTSSCHHHHHHHHHHHHTTCS
T ss_pred heeEecccCceeecCHHHHHHHHHcCCChHHHHHHHHhcCCcEecCCCCCHHHHHHhCCHhhCCHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCCHHHHHHHHHHHHHcCCcEEEEEecCCcc
Q psy1689 907 QSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPA 947 (998)
Q Consensus 907 qsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~ 947 (998)
||||+|||+|+.+.+||.++|++|||+||||++||||++.-
T Consensus 631 qsiS~tl~~~~~t~~~l~~~y~~Awk~GlKt~~yy~r~~~~ 671 (676)
T 2wgh_A 631 QSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAH 671 (676)
T ss_dssp SCCCCCEECSSCCHHHHHHHHHHHHHTTCSEEESCEECC--
T ss_pred cccceEEecCCCCHHHHHHHHHHHHHhCCCEEEEEEEEecc
Confidence 99999999999999999999999999999999999998753
No 11
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel, adenosylcobalamin dependent, ribonucle reductase; HET: TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A* 1xjg_A* 1xje_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A* 1xjj_A* 1xjk_A*
Probab=100.00 E-value=2e-62 Score=585.83 Aligned_cols=245 Identities=21% Similarity=0.313 Sum_probs=221.4
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccC--cCcccccccCCC
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS--QGILQYDMWGVT 664 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~--~g~l~~d~~~~~ 664 (998)
.+|+||||+|||||+|++|||||+|+||++|+++|||+|+++|+++|++||+|+|+||.|++|+|+ +|.+|+|.|
T Consensus 385 ~~R~IGLGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~e~G~f~~f~~s~~~~~~g~~~~~~~--- 461 (644)
T 3o0q_A 385 ESRRLGLGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTEDNFVPFAMG--- 461 (644)
T ss_dssp HHCCEEEEEECHHHHHHHHTCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGSHHHHSSSCCSSCCC---
T ss_pred hcCccccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCchhccCCccccccc---
Confidence 578999999999999999999999999999999999999999999999999999999999999995 455554321
Q ss_pred CccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHH
Q psy1689 665 PTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEI 744 (998)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 744 (998)
T Consensus 462 -------------------------------------------------------------------------------- 461 (644)
T 3o0q_A 462 -------------------------------------------------------------------------------- 461 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHH--hhcccccceecCCCCcchhhhcCCCccccc
Q psy1689 745 IMKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIA--KHGVRNSLLIAPMPTASTAQILGNNESFEP 822 (998)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~--~~G~RNs~~~aiAPTgSiS~i~g~s~giEP 822 (998)
...+|++||+.|+ +||+|||+++|||||||||+|+|||+||||
T Consensus 462 -----------------------------------~~~~W~~Lr~~i~~~~~G~RNs~l~aiAPTgSiS~i~g~s~gIEP 506 (644)
T 3o0q_A 462 -----------------------------------MSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEP 506 (644)
T ss_dssp -----------------------------------SCTTHHHHHHHHHHTTTCCSCSCCBCBCCCTTHHHHTTSCCTTCC
T ss_pred -----------------------------------ccccHHHHHHHHHhcccCceehheeccCCCcchhhhcCCCCcccc
Confidence 1357999999999 999999999999999999999999999999
Q ss_pred cccceEEEEcc--ccc---eEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHH
Q psy1689 823 YTSNIYSRRVL--SGE---FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897 (998)
Q Consensus 823 ~~a~~~~r~~~--~G~---~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m 897 (998)
+|+++|+|+++ +|+ |.++|++|+++|+++ |++++++.|+ .+||||+++.||++++++|+||+||+|++||+|
T Consensus 507 ~~s~~y~R~~~~~~G~~~~~~~vn~~l~~~l~~~--~~~~~~~~i~-~~Gsv~~~~~lp~~~~~~f~tA~ei~~~~~I~m 583 (644)
T 3o0q_A 507 NFLLAYTRFVTKEDGTKEPLLYVNQVLREKLNPE--ILKRIEKELI-EKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLM 583 (644)
T ss_dssp CSCSEEEEC---------CEEEECHHHHHHSCHH--HHHHHHHHHH-HHSSSTTCTTSCHHHHHHSCCGGGSCHHHHHHH
T ss_pred cccceEEEEeeccCCCccceeeeCHHHHHHHHHh--ccHHHHHHHH-hcCCccccccCCHHHHhHcccHHhCCHHHHHHH
Confidence 99999999998 776 999999999999988 8889998887 579999999999999999999999999999999
Q ss_pred HHHhCCcccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccccchh
Q psy1689 898 AADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952 (998)
Q Consensus 898 ~a~~Q~~iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~~~ 952 (998)
||++|||||||||+|||+| ++|++||.++|++||++||||+||||++++..|++.
T Consensus 584 ~A~~Q~~iDqs~S~tln~p~~~t~~d~~~~y~~Awk~GlK~~t~YR~gs~~~qvl~ 639 (644)
T 3o0q_A 584 QDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQVLT 639 (644)
T ss_dssp HHHHHTTCSSCBCCEEEECTTCCHHHHHHHHHHHHHSSCSEEEEEETTCC------
T ss_pred HHHHCccccccccceeecCCCCCHHHHHHHHHHHHHhCCCEEEEECCCCccccccc
Confidence 9999999999999999999 899999999999999999999999999999999986
No 12
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded alpha/beta barrel, protein-specificity-effector complex, DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP: a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Probab=100.00 E-value=1.1e-53 Score=518.26 Aligned_cols=235 Identities=21% Similarity=0.387 Sum_probs=202.5
Q ss_pred CCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCccCcCcccccccCCCC
Q psy1689 587 DNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 587 ~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G-~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
.+|+||||+|||||+|+++|+||+|+||++|+++|||+|+|+|+++|++||+|+| +||.|++|+|++|.+ ||+|...
T Consensus 463 ~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~A~~aS~eLA~E~G~~f~~f~~s~~~~G~~-f~~~~~~- 540 (714)
T 1peq_A 463 ASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDY-FTQYLQD- 540 (714)
T ss_dssp HHCCEEEEEECHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTGGGSHHHHSHH-HHHHHSS-
T ss_pred hcCCeEEeHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccChhhccch-hhhcccc-
Confidence 5789999999999999999999999999999999999999999999999999999 999999999999998 7764210
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
+|. |. .+.+.++++. .|
T Consensus 541 ----~~~--------------------------p~---------------~~~v~~l~~~----~~-------------- 557 (714)
T 1peq_A 541 ----DWQ--------------------------PK---------------TAKVRALFAR----SG-------------- 557 (714)
T ss_dssp ----CCS--------------------------CS---------------SHHHHHHHHH----HT--------------
T ss_pred ----ccC--------------------------cc---------------cHHHHHHhhh----cC--------------
Confidence 010 10 0111122110 00
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
+.....++|++||++|++||+|||+++|||||||||+|+|||+||||+|+
T Consensus 558 ------------------------------~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~S~gIeP~~s 607 (714)
T 1peq_A 558 ------------------------------ITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVA 607 (714)
T ss_dssp ------------------------------CCCCCHHHHHHHHHHHHHHCCSCSCCBCBCCCCTHHHHHTCCSSSSCCSC
T ss_pred ------------------------------CCCcchhhHHHHHHHHHHhCCchhheeeecCCCcchhhcCCCCccccccc
Confidence 11125789999999999999999999999999999999999999999999
Q ss_pred ceEEEEccc-cceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCChHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLS-GEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~-G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~~ 904 (998)
++|+|++.. |+|.++||+ +|++++++|+|||||+|++||+|||++|||
T Consensus 608 ~~~~r~~~~~g~~~~~~p~-------------------------------l~~~~~~~y~tA~ei~~~~~i~m~A~~Q~~ 656 (714)
T 1peq_A 608 KIEIRKEGKTGRVYYPAPF-------------------------------MTNENLDMYQDAYDIGPEKIIDTYAEATRH 656 (714)
T ss_dssp SEEEECCSTTSCEEEECTT-------------------------------CCTTSGGGCCCHHHHCHHHHHHHHHHHHTT
T ss_pred ceeEEecccCCcEEEeCCc-------------------------------cchhhHhhhCcHhhCCHHHHHHHHHHHcCc
Confidence 999999998 998877665 455678999999999999999999999999
Q ss_pred ccccccceeecC-CCCHHHHHHHHHHHHHcCCcEEEEEecCCccc
Q psy1689 905 IDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948 (998)
Q Consensus 905 iDqsiS~tl~~~-~~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~ 948 (998)
||||||+|||+| +++.+||.++|++||++|||| +||+|+++.+
T Consensus 657 iDqsiS~tl~~~~~~t~~dl~~~y~~Awk~GlKt-iYY~rs~~~~ 700 (714)
T 1peq_A 657 VDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700 (714)
T ss_dssp CSSCBCCCEEECTTCCHHHHHHHHHHHHHHTCCE-ECCEEECCC-
T ss_pred ccccccceEEeCCCCCHHHHHHHHHHHHHhCCCE-EEEccccccc
Confidence 999999999999 679999999999999999999 7999988654
No 13
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha; oxidoreductase, DNA replication, allosteric enzyme, nucleotide-binding; HET: NIY; 2.10A {Escherichia coli} PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A 2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A* 2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Probab=100.00 E-value=4.7e-53 Score=516.27 Aligned_cols=225 Identities=27% Similarity=0.419 Sum_probs=201.4
Q ss_pred cCCcCcccccccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccCcCcccccccCCCC
Q psy1689 586 RDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTP 665 (998)
Q Consensus 586 ~~~~~~g~g~~Glad~l~~lgi~Y~S~ea~~l~~~i~e~i~~~a~~aS~eLA~e~G~fp~f~~s~~~~g~l~~d~~~~~~ 665 (998)
..+|+||||+|||||+|+++||||+|+||++|+++|||+|+|+|+++|++||+|+|+||.|++|+|++|.+|+|.|....
T Consensus 508 ~~~R~IGlGv~Glad~L~~~gi~Y~S~ea~~~~~~i~e~i~~~a~~aS~eLA~E~G~~~~f~~s~~~~G~~~~d~~~~~~ 587 (761)
T 2xap_A 508 MGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDL 587 (761)
T ss_dssp HHHCCEEEEEECHHHHHHHTTCCSTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTGGGBSGGGTCCHHHHSCGGG
T ss_pred HhcCccccCcccHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhcCCcchhhhhhhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred ccchhhHHHHHHHHHhhhhhHHHhhhhccccCCcccchhhhhccccccchhHHHHHHHhhhccccCCccccccchhHHHH
Q psy1689 666 TDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEII 745 (998)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 745 (998)
..
T Consensus 588 ~~------------------------------------------------------------------------------ 589 (761)
T 2xap_A 588 DT------------------------------------------------------------------------------ 589 (761)
T ss_dssp GG------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHhhhhhhhhhhhccccccccccccccccCCCCCchhhHHHHHHHHHhhcccccceecCCCCcchhhhcCCCcccccccc
Q psy1689 746 MKNADRLNSAIIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825 (998)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~W~~L~~~i~~~G~RNs~~~aiAPTgSiS~i~g~s~giEP~~a 825 (998)
+ .++...++|++||+.|++||+|||+++|||||||||+|+|+|+||||+|+
T Consensus 590 ------~-----------------------~~~~~~~dW~~Lr~~i~~~G~RNs~l~aiAPTgTiS~i~g~s~gIeP~~~ 640 (761)
T 2xap_A 590 ------I-----------------------ANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRG 640 (761)
T ss_dssp ------T-----------------------CCCCCCSCHHHHHHHHHHHCCSCSCCBCBCCCSHHHHHTTCCCTTCCCSS
T ss_pred ------h-----------------------cCcchhhhHHHHHHHHHHhCcccceeeecCCCcceeeecCCCCeeccccc
Confidence 0 00113479999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccceEEechhHHHHHHHcCCChHHHHHHHHhcCCccccCCCCChhhHhhhcccCCCC-hHhHHHHHHHhCCc
Q psy1689 826 NIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADRGAF 904 (998)
Q Consensus 826 ~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~~i~~~~Gsv~~i~~l~~~~k~~f~tA~ei~-~~~~I~m~a~~Q~~ 904 (998)
++|+|+...|++..++|.+. +++++|+|||||+ |++||+|||++|||
T Consensus 641 ~~~~r~~~~G~~~~~~p~~~--------------------------------~l~~~y~ta~ei~~~~~~i~m~A~~Q~~ 688 (761)
T 2xap_A 641 YVSIKASKDGILRQVVPDYE--------------------------------HLHDAYELLWEMPGNDGYLQLVGIMQKF 688 (761)
T ss_dssp SEEEECCTTSCEEEECTTHH--------------------------------HHTTTCCCGGGCSCSHHHHHHHHHHHTT
T ss_pred ceeeEecccCceeeeCCCHH--------------------------------HHHHHHhHHHcccCHHHHHHHHHHHcCc
Confidence 99999999999988887752 2467899999999 99999999999999
Q ss_pred ccccccceeecCC-------CCHHHHHHHHHHHHHcCCcEEEEEecCCccccc
Q psy1689 905 IDQSQSLNIYMAE-------INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950 (998)
Q Consensus 905 iDqsiS~tl~~~~-------~~~~~i~~~y~~Aw~~GlK~~~yY~r~~~~~~~ 950 (998)
||||||+|||+|+ +|.+||.++|++|||+|||| +||+|+++++..
T Consensus 689 iDqsiS~tl~~~~~~~~~~~~t~~dl~~~y~~Awk~GlKT-~Yy~rsr~~~~~ 740 (761)
T 2xap_A 689 IDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDGAED 740 (761)
T ss_dssp CSSCBCCCEEECGGGSGGGCEEHHHHHHHHHHHHHTTCCE-ECCEEECCC---
T ss_pred ccccccceEEECCcccccCCCCHHHHHHHHHHHHHcCCCE-ECCCCCcchhhh
Confidence 9999999999962 68999999999999999998 899998877644
No 14
>1l1l_A Ribonucleoside triphosphate reductase; 10-stranded alpha-beta barrel, central finger loop, oxidoreductase; 1.75A {Lactobacillus leichmannii} SCOP: c.7.1.4
Probab=100.00 E-value=8.2e-39 Score=389.40 Aligned_cols=153 Identities=14% Similarity=0.116 Sum_probs=134.9
Q ss_pred hhHHHHHHHHHhhccccc-ceecCCCCcchhhhcCCCccccccccceEEEEccccceEEechhHHHHHHHcCCChHHHHH
Q psy1689 782 WDWAALKEKIAKHGVRNS-LLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD 860 (998)
Q Consensus 782 ~~W~~L~~~i~~~G~RNs-~~~aiAPTgSiS~i~g~s~giEP~~a~~~~r~~~~G~~~~~n~~l~~~l~~~G~~~~~~~~ 860 (998)
++|+. +++||+||+ +++|||||||||+|+|||+||||+|+++|+|++ +|..+|+++ +.|+++|+|.++
T Consensus 528 ~~w~~----~~~~G~rns~~ltaIAPTgTiS~i~g~S~GIEP~~a~~~~rr~---~~~~~n~~~-~~l~~~g~~~~~--- 596 (739)
T 1l1l_A 528 ADQDY----SKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGAYLIQRI---RFQDSDPLL-PALKACGYRTEA--- 596 (739)
T ss_dssp HHHHH----HHHHTCCCCSCCEEBCCCHHHHHHHTCCCTTCCBSCSEEEEEE---EEETTCTHH-HHHHHTTCEEEE---
T ss_pred HHHHH----HHHhCCCChhheEEECCCccHHHhcCCCCcccccceeeEEEEe---eecccchHH-HHHHHcCCCchH---
Confidence 46764 778999998 999999999999999999999999999999998 488899975 899999999765
Q ss_pred HHHhcCCccccCCC-CChhhHhhhcccCCCChHhHHHHHHHhCC-cccccccceeecCCCCHHHHHHHHHHHHHcCCcEE
Q psy1689 861 QLIVNNGSIQDIEG-IPQKLKDLYKTVWEIPQKTVLDMAADRGA-FIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTG 938 (998)
Q Consensus 861 ~i~~~~Gsv~~i~~-l~~~~k~~f~tA~ei~~~~~I~m~a~~Q~-~iDqsiS~tl~~~~~~~~~i~~~y~~Aw~~GlK~~ 938 (998)
.++..+|+||+++. .|++++++|+||+||+|++||+|||++|| |||||||+|||+|+..+++|.++ ++||++||||
T Consensus 597 ~i~~~~g~v~~ip~~~~~~~~~~f~tA~eI~~~~~i~~~A~~Q~~wiDqsiS~Ti~~~~~~~~~l~~l-~~awk~GlK~- 674 (739)
T 1l1l_A 597 DIYTENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQDSEGDQVESL-LRQYRFITKS- 674 (739)
T ss_dssp CSSSTTEEEEEEEEECTTTTCTTCCBTTTSCHHHHHHHHHHHHHHTCSSCBCCEEEECGGGGGGHHHH-HHHTTTTCSE-
T ss_pred HHhhcCCceeeccccCchhhhhhcccHHhCCHHHHHHHHHHhcccccccccceeEEeCCchHHHHHHH-HHHHHhCCcE-
Confidence 45578899999987 57788999999999999999999999999 59999999999994447999999 6799999999
Q ss_pred EEEecCCcc
Q psy1689 939 MYYLRTKPA 947 (998)
Q Consensus 939 ~yY~r~~~~ 947 (998)
+||+|...+
T Consensus 675 ~yylR~~~~ 683 (739)
T 1l1l_A 675 TSLLPYFGG 683 (739)
T ss_dssp EEEEECCCC
T ss_pred EEEecCCCc
Confidence 566675554
No 15
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=93.23 E-value=0.55 Score=56.36 Aligned_cols=241 Identities=11% Similarity=0.101 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHhhCCceeEehhhhhhhCC-C---CCCC-cee---ecCCccceecccCCCCcceeeecccccccccCC-
Q psy1689 185 RKLWFAILDSQIETGTPYMLYKDACNRKSN-Q---QNLG-TIK---CSNLCTEIVEYTSKDEVAVCNLASIALNMYINP- 255 (998)
Q Consensus 185 r~Lw~~I~~~a~~tG~Pgl~f~D~~Nr~~~-~---~~~g-~I~---~sNpC~EI~l~~~~~~~~~CNL~SINL~~~v~~- 255 (998)
-+|++..+++..+..-|..++.|..-...+ . ...| +-. -.|-.++-. ..-+++-.+.+|||++.--.
T Consensus 251 ~dl~~~a~~~~ak~~fpn~~~~d~~~~~~g~~~~~~~MgCR~~l~~~~~~~g~~~----~~g~Gn~gvvTINLpRia~~~ 326 (605)
T 1h7b_A 251 YDIKQLALECASKRMYPDIISAKNNKAITGSSVPVSPMGCRSFLSVWKDSTGNEI----LDGRNNLGVVTLNLPRIALDS 326 (605)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEHHHHHHHHCCSSCCCCBTTTBCCCCCBCTTSCBC----CTTCBEEEEEEEEHHHHHHTT
T ss_pred HHHHHHHHHHhCCcccCchhhcccccccCCcccceeeecchhcchhhhhccCCcC----ccccceeeeEEeeHHHHHHHh
Confidence 478999999999999999999886522211 0 0000 000 011112210 11244555669999997532
Q ss_pred ---CCCCCC--hhHHHHHHHHHHHHHHHhhhcCC------CcH--------------HHHHHHHhhcC-CCccccchHHH
Q psy1689 256 ---ADKTYN--FTKLKDVAKIVTKNLNKIIDVNF------YPV--------------EEARNSNMRHR-PIGIGVQGLAD 309 (998)
Q Consensus 256 ---~~~~fD--~~~l~~~v~~avr~LD~vId~~~------~p~--------------~e~~~~~~~~R-~IGLGv~GLad 309 (998)
..+..+ |+.|.+.+.++.+.|+.=.+.-. +|. .++....+..| ++.||+.||+.
T Consensus 327 ~~~a~gd~~~F~~~Ld~~l~l~~~~L~~r~~~l~~~~~~~~p~L~~~G~~~~~l~~~d~i~~~~~~~~~t~tiG~iGL~E 406 (605)
T 1h7b_A 327 YIGTQFNEQKFVELFNERMDLCFEALMCRISSLKGVKATVAPILYQEGAFGVRLKPDDDIIELFKNGRSSVSLGYIGIHE 406 (605)
T ss_dssp EETTEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBGGGCHHHHTSSTTSSCCCTTSBSHHHHTTTTSEEEEEEECHHH
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhCcccccccCCcccHHHHhccCCcceeeeHHHHHH
Confidence 111112 56788888888887754222110 110 01111222122 37999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCcCccCcccccccCCCCCCHhhHHHHHHHHH
Q psy1689 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388 (998)
Q Consensus 310 ~L~~lgl~Y~S~ea~~l~~~I~e~i~~~A~~aS~eLAke~G~-f~~f~~S~~~~G~l~~d~~~~~p~~~~~W~~Lr~~i~ 388 (998)
++. +. |.+|+.+|+++|...+.+.+ +|.|- |. . ..+|....--.-++.+-+
T Consensus 407 ~~~-l~-------a~~f~~~Il~~m~~~~~~~~----~e~g~~~~---------------l-~aTPAEs~~~Rfa~~D~k 458 (605)
T 1h7b_A 407 LNI-LV-------GRDIGREILTKMNAHLKQWT----ERTGFAFS---------------L-YSTPAENLCYRFCKLDTE 458 (605)
T ss_dssp HHH-HH-------TSCCHHHHHHHHHHHHHHHH----HHHCCEEE---------------E-ECCCCTTHHHHHHHHHHH
T ss_pred HHH-HH-------HHHHHHHHHHHHHHHHHHHH----HHHCCcee---------------E-EecccccHHHHHHHHHHH
Confidence 999 75 77899999999977766554 33452 11 0 112221111122334445
Q ss_pred hcCCCcccccccCCccchhhhcCCcccccccccceEEEEccccceEEeChhHHHHHHHcCCCcHHHHHHHhhcCCccccc
Q psy1689 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDI 468 (998)
Q Consensus 389 ~~G~RNs~ltaiaPTgs~S~i~G~S~gieP~~a~~y~R~~~~G~~~~vn~~l~~~L~~~g~~~~~~~~~i~~~~Gsv~~~ 468 (998)
++|+ |.|.|. .|+|.|.|
T Consensus 459 ~fG~----------------i~g~td--~~YYTNS~-------------------------------------------- 476 (605)
T 1h7b_A 459 KYGS----------------VKDVTD--KGWYTNSF-------------------------------------------- 476 (605)
T ss_dssp HHCC----------------CTTTTS--SSSCCCTT--------------------------------------------
T ss_pred HcCC----------------cCCCCC--CCCCCCCE--------------------------------------------
Confidence 5551 112111 22222211
Q ss_pred CCCChhhhhhcccccCCChHHHHHHHHHhCCccccccceeEeecCC--CHHHHHHHHHHHHH
Q psy1689 469 EGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI--NYAKMSSMHFHGWK 528 (998)
Q Consensus 469 ~~lp~~~k~~f~tA~ei~~~~~I~m~a~~Q~~VDqs~S~tl~l~~~--t~~~i~~~~~~Awk 528 (998)
.+| ...++++.+.|+..+..|++...+...-+++++. +++.+.++...|.+
T Consensus 477 -hip--------V~~~~~~~eki~~e~~~~~~~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~ 529 (605)
T 1h7b_A 477 -HVS--------VEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQ 529 (605)
T ss_dssp -CCC--------TTSCCCHHHHHHHHGGGGGTCTTBCCEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred -Eec--------CCCCCCHHHHHHhhcccccccCCeeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 122 1345889999999999999999999999999963 67888888888887
Done!