RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1689
(998 letters)
>gnl|CDD|178056 PLN02437, PLN02437, ribonucleoside--diphosphate reductase large
subunit.
Length = 813
Score = 914 bits (2365), Expect = 0.0
Identities = 334/521 (64%), Positives = 407/521 (78%), Gaps = 22/521 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+S+ WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN GL+D WGE+F+ LY KYE EGK + V A++LWFAIL+SQIETGTPYML+KD+CN
Sbjct: 353 PNEAPGLADCWGEEFERLYTKYEREGKAKKVVQAQQLWFAILESQIETGTPYMLFKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIAL---------NMYINPAD---- 257
RKSNQQNLGTIK SNLCTEI+EYTS E AVCNLASIAL + +P+
Sbjct: 413 RKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRFVREKGVPLESHPSKLVGS 472
Query: 258 -----KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
+ ++F KL +V +VT+NLNKIIDVN+YPVE AR SNMRHRPIGIGVQGLAD FI
Sbjct: 473 LGSKNRYFDFEKLAEVTAVVTRNLNKIIDVNYYPVETARRSNMRHRPIGIGVQGLADAFI 532
Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGV 372
+ +PFD E++ LNK IFETIYY AL+AS E+AAR+GPY+TY GSPVS+GILQ DMWGV
Sbjct: 533 LLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVSKGILQPDMWGV 592
Query: 373 TPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGE 432
TP+ WDWAAL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIYSRRVLSGE
Sbjct: 593 TPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGE 652
Query: 433 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 492
F VVN HLL DL E+GLW +K+++I NGS+Q I IP LK +YKTVWEI Q+T++D
Sbjct: 653 FVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWEIKQRTLVD 712
Query: 493 MAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
MAADRG +IDQSQSLNI+M + N+ K++S+HF+ W GLKTGMYYLR++ AA+AI+FT+D
Sbjct: 713 MAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVD 772
Query: 553 KTKMANAMASKDARSQEEIQADQEQAMAAMICRRDNKEDCI 593
+ + A +E+++ MA M+C DN+E+C+
Sbjct: 773 TASLKPSATGVAAPEEEDVETK----MAQMVCSLDNREECL 809
Score = 394 bits (1013), Expect = e-123
Identities = 140/230 (60%), Positives = 176/230 (76%), Gaps = 4/230 (1%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+ DMWGVTP+ WDWAAL+E I+K+GVRNSLL+APMPTAST+QILGNNE FEPYTSNIY
Sbjct: 585 LQPDMWGVTPSGRWDWAALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIY 644
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
SRRVLSGEF VVN HLL DL E+GLW +K+++I NGS+Q I IP LK +YKTVWE
Sbjct: 645 SRRVLSGEFVVVNKHLLHDLTEMGLWTPTLKNKIIAENGSVQKIPEIPDDLKAIYKTVWE 704
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I Q+T++DMAADRG +IDQSQSLNI+M + N+ K++S+HF+ W GLKTGMYYLR++ AA
Sbjct: 705 IKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAA 764
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCLK 998
+AI+FT+D ++ T + D E MA M+C DN+E+CL
Sbjct: 765 DAIKFTVDTA----SLKPSATGVAAPEEEDVETKMAQMVCSLDNREECLA 810
Score = 176 bits (449), Expect = 1e-45
Identities = 61/86 (70%), Positives = 69/86 (80%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GAFAIYLEPWH DIF+FL+L+KN GKEE RARDLFY LWIPD FM RV+S+ WSL C
Sbjct: 293 RKGAFAIYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWIPDLFMERVQSNGDWSLFC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
PN GL+D WGE+F+ LY KYE EG
Sbjct: 353 PNEAPGLADCWGEEFERLYTKYEREG 378
Score = 162 bits (413), Expect = 3e-41
Identities = 59/83 (71%), Positives = 70/83 (84%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD FI + +PFD E++ LNK IFETIYY AL+AS E+AAR+GPY+TY GSPVS
Sbjct: 522 IGVQGLADAFILLGMPFDSPEAQQLNKDIFETIYYHALKASSELAAREGPYETYAGSPVS 581
Query: 653 QGILQYDMWGVTPTDLWDWAALK 675
+GILQ DMWGVTP+ WDWAAL+
Sbjct: 582 KGILQPDMWGVTPSGRWDWAALR 604
Score = 86.3 bits (214), Expect = 4e-17
Identities = 30/36 (83%), Positives = 34/36 (94%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+LWFAIL+SQIETGTPYML+KD+CNRKSNQQNL I
Sbjct: 388 QLWFAILESQIETGTPYMLFKDSCNRKSNQQNLGTI 423
Score = 83.6 bits (207), Expect = 3e-16
Identities = 31/54 (57%), Positives = 45/54 (83%)
Query: 717 EVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
E ++++YN VN+ +G + P+I+D Y+IIMKNA RL+S IIYDRDF+Y++FGFK
Sbjct: 96 ETVKDMYNHVNERSGLKAPLIADDVYDIIMKNAARLDSEIIYDRDFDYDYFGFK 149
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 681 bits (1760), Expect = 0.0
Identities = 226/449 (50%), Positives = 302/449 (67%), Gaps = 11/449 (2%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YLE WH DI +FL+LKKN G EE RAR+L G+W+PD FM+RVE+D W+L
Sbjct: 78 RRGAVAVYLEVWHPDIEEFLDLKKNNGDEERRARNLNLGVWVPDLFMKRVENDEDWTLFS 137
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P GL D +GE+F++ Y+K EA GK + V AR+LWF I++S ETG PY+L+KDA N
Sbjct: 138 PREAPGLEDLYGEEFEEEYEKLEANGKVKKTVKARELWFKIVESAWETGEPYILFKDAVN 197
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
R + Q++LGTIK SNLCTEIV+ TS E AVCNLASI L ++ D T++F +L++V +
Sbjct: 198 RHNPQKHLGTIKSSNLCTEIVQPTSPGEDAVCNLASINLAKFVEN-DFTFDFEELREVVR 256
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+ + L+ +ID+N YPV EAR SN RHR IG+GV GLAD ++ +P+D E+R L +I
Sbjct: 257 LAVRALDNVIDLNDYPVPEARKSNKRHRSIGLGVMGLADALAKLGIPYDSEEARELADEI 316
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYY AL+AS E+A GP+ +EGS ++G DW L+E I KH
Sbjct: 317 FETIYYYALKASNELAKEKGPFPGFEGSKYAKG------EFHAIPLREDWEELREDIKKH 370
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNS L A PT S +QI G E EP SN+YSRR SGEF VVN +LLRDL E LW
Sbjct: 371 GLRNSQLTAIAPTGSISQIAGTTEGIEPIFSNVYSRRSKSGEFLVVNPYLLRDLRE--LW 428
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK++ + NGS+Q I IP+++K LYKT ++I K +DMAA R F+DQS S ++
Sbjct: 429 SEEMKNE-LAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQPFVDQSISKTLF 487
Query: 511 M-AEINYAKMSSMHFHGWKLGLKTGMYYL 538
+ + + + S++ + WKLGLKTG YY
Sbjct: 488 LPEDATASDLKSLYLYAWKLGLKTGTYYR 516
Score = 243 bits (623), Expect = 1e-70
Identities = 80/161 (49%), Positives = 106/161 (65%), Gaps = 4/161 (2%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW L+E I KHG+RNS L A PT S +QI G E EP SN+YSRR SGEF VVN
Sbjct: 359 DWEELREDIKKHGLRNSQLTAIAPTGSISQIAGTTEGIEPIFSNVYSRRSKSGEFLVVNP 418
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+LLRDL E LW + MK++ + NGS+Q I IP+++K LYKT ++I K +DMAA R
Sbjct: 419 YLLRDLRE--LWSEEMKNE-LAYNGSVQPIPEIPEEIKALYKTAFDIDPKGHIDMAAARQ 475
Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYL 942
F+DQS S +++ + + + S++ + WKLGLKTG YY
Sbjct: 476 PFVDQSISKTLFLPEDATASDLKSLYLYAWKLGLKTGTYYR 516
Score = 157 bits (399), Expect = 1e-40
Identities = 49/89 (55%), Positives = 63/89 (70%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YLE WH DI +FL+LKKN G EE RAR+L G+W+PD FM+RVE+D W+L
Sbjct: 78 RRGAVAVYLEVWHPDIEEFLDLKKNNGDEERRARNLNLGVWVPDLFMKRVENDEDWTLFS 137
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLVY 89
P GL D +GE+F++ Y+K EA G V
Sbjct: 138 PREAPGLEDLYGEEFEEEYEKLEANGKVK 166
Score = 102 bits (256), Expect = 1e-22
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV GLAD ++ +P+D E+R L +IFETIYY AL+AS E+A GP+ +EGS +
Sbjct: 288 LGVMGLADALAKLGIPYDSEEARELADEIFETIYYYALKASNELAKEKGPFPGFEGSKYA 347
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+G DW L+ +GL
Sbjct: 348 KG------EFHAIPLREDWEELREDIKKHGL 372
Score = 68.3 bits (168), Expect = 1e-11
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+LWF I++S ETG PY+L+KDA NR + Q++L I
Sbjct: 173 ELWFKIVESAWETGEPYILFKDAVNRHNPQKHLGTI 208
>gnl|CDD|233902 TIGR02506, NrdE_NrdA, ribonucleoside-diphosphate reductase, alpha
subunit. This model represents the alpha (large) chain
of the class I ribonucleotide reductase (RNR). RNR's are
responsible for the conversion of the ribose sugar of
RNA into the deoxyribose sugar of DNA. This is the
rate-limiting step of DNA biosynthesis. Class I RNR's
generate the required radical (on tyrosine) via a
"non-heme" iron cofactor which resides in the beta
(small) subunit. The alpha subunit contains the
catalytic and allosteric regulatory sites. The mechanism
of this enzyme requires molecular oxygen. E. Coli
contains two versions of this enzyme which are regulated
independently (NrdAB and NrdEF, where NrdA and NrdE are
the large chains ). Most organisms contain only one, but
the application of the gene symbols NrdA and NrdE are
somewhat arbitrary. This model identifies RNR's in
diverse clades of bacteria, eukaryotes as well as
numerous DNA viruses and phage [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 617
Score = 545 bits (1406), Expect = 0.0
Identities = 212/466 (45%), Positives = 296/466 (63%), Gaps = 18/466 (3%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGA A+YLE WH DI +FL+LKKN G E R +LFYGLWIPD FM+RVE D W L
Sbjct: 155 RPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFS 214
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAE---GKFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
P GL +GE+F++ Y++ E + K IR+V AR L IL +++ETG PY+L+KD
Sbjct: 215 PYDVPGLYGLYGEEFEEEYERLEKDVEARKKIRKVSARDLMKDILRTRVETGRPYILFKD 274
Query: 208 ACNRK-SNQQNLGTIKCSNLCTEIVEYTSKD---EVAVCNLASIALNMYINPADKTYNFT 263
A N+ + G IK SNLCTEI + T E AVCNLAS+ L ++ + ++F+
Sbjct: 275 AVNKHNPFKTGGGAIKMSNLCTEITQPTDDSHKGETAVCNLASVNLANFVM--EDKFDFS 332
Query: 264 KLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNES 323
+L+D +I + L+ +ID+ YP A SN R R IGIGV GL D+ ++ LP+D E+
Sbjct: 333 ELEDAVRIAVRFLDNVIDLQNYPTAPAAKSNQRRRSIGIGVMGLHDVLAKLGLPYDSEEA 392
Query: 324 RLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLW----- 378
R LN +IFE IYY A++AS E+A GP+ + GS ++G L D W T
Sbjct: 393 RDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYAKGWLHPDTWEKTIDPKTSMAPT 452
Query: 379 --DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
DW AL+E+I ++G+RNS L A MPTAS++Q+ G ES EP SNI++++ LSGEF +
Sbjct: 453 EEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIEPVFSNIFTKKTLSGEFLIP 512
Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
N +L+++L ELGLWD + + ++ N GS Q I IP+ LK YKT +E+ Q+ ++DMAAD
Sbjct: 513 NKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKYKYKTAYELDQEALIDMAAD 572
Query: 497 RGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTK 541
R F+DQS SLN+++ E + + + WK GLKT MYY R++
Sbjct: 573 RQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MYYCRSR 617
Score = 206 bits (527), Expect = 1e-56
Identities = 81/185 (43%), Positives = 117/185 (63%), Gaps = 9/185 (4%)
Query: 769 FKYDMWGVTPTDLW-------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 821
D W T DW AL+E+I ++G+RNS L A MPTAS++Q+ G ES E
Sbjct: 434 LHPDTWEKTIDPKTSMAPTEEDWEALRERIKEYGLRNSQLTALMPTASSSQLTGVTESIE 493
Query: 822 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 881
P SNI++++ LSGEF + N +L+++L ELGLWD + + ++ N GS Q I IP+ LK
Sbjct: 494 PVFSNIFTKKTLSGEFLIPNKYLMKELEELGLWDADRRGDIVENVGSPQPIAAIPETLKY 553
Query: 882 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMY 940
YKT +E+ Q+ ++DMAADR F+DQS SLN+++ E + + + WK GLKT MY
Sbjct: 554 KYKTAYELDQEALIDMAADRQKFVDQSISLNLFLTEEVTAKDLLKLLLLAWKKGLKT-MY 612
Query: 941 YLRTK 945
Y R++
Sbjct: 613 YCRSR 617
Score = 124 bits (314), Expect = 2e-29
Identities = 46/89 (51%), Positives = 58/89 (65%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGA A+YLE WH DI +FL+LKKN G E R +LFYGLWIPD FM+RVE D W L
Sbjct: 155 RPGAAAVYLEVWHPDIEEFLDLKKNNGDERRRCDNLFYGLWIPDLFMKRVEEDKDWYLFS 214
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLVY 89
P GL +GE+F++ Y++ E +
Sbjct: 215 PYDVPGLYGLYGEEFEEEYERLEKDVEAR 243
Score = 95.1 bits (237), Expect = 5e-20
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV GL D+ ++ LP+D E+R LN +IFE IYY A++AS E+A GP+ + GS +
Sbjct: 371 IGVMGLHDVLAKLGLPYDSEEARDLNDRIFEAIYYYAIKASAELAKEKGPFPGFSGSKYA 430
Query: 653 QGILQYDMWGVTPTDLW-------DWAALKVLALVYGL 683
+G L D W T DW AL+ YGL
Sbjct: 431 KGWLHPDTWEKTIDPKTSMAPTEEDWEALRERIKEYGL 468
Score = 45.8 bits (109), Expect = 9e-05
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 673 ALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSN 712
A K + V L IL +++ETG PY+L+KDA N+ +
Sbjct: 242 ARKKIRKVSARDLMKDILRTRVETGRPYILFKDAVNKHNP 281
>gnl|CDD|153088 cd01679, RNR_I, Class I ribonucleotide reductase. Ribonucleotide
reductase (RNR) catalyzes the reductive synthesis of
deoxyribonucleotides from their corresponding
ribonucleotides. It provides the precursors necessary
for DNA synthesis. RNRs are separated into three classes
based on their metallocofactor usage. Class I RNRs,
found in eukaryotes, bacteria, and many viruses, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in anaerobic bacteria, bacteriophages, and archaea, use
an FeS cluster and S-adenosylmethionine to generate a
glycyl radical. Many organisms have more than one class
of RNR present in their genomes. All three RNRs have a
ten-stranded alpha-beta barrel domain that is
structurally similar to the domain of PFL (pyruvate
formate lyase). Class I RNR is oxygen-dependent and can
be subdivided into classes Ia (eukaryotes, prokaryotes,
viruses and phages) and Ib (which is found in
prokaryotes only). It is a tetrameric enzyme of two
alpha and two beta subunits; this model covers the major
part of the alpha or large subunit, called R1 in class
Ia and R1E in class Ib.
Length = 460
Score = 514 bits (1326), Expect = e-174
Identities = 198/456 (43%), Positives = 247/456 (54%), Gaps = 126/456 (27%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YLE WH DI +FL+LKKN G E RARDLFYG+WIPD FM RVE
Sbjct: 125 RKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVE--------- 175
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
R LW IL+SQ ETG PY+L+KD CN
Sbjct: 176 ----------------------------------RDLWRKILESQFETGYPYILFKDTCN 201
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSK-----DEVAVCNLASIALNMYINPADKTYNFTKL 265
RK+ Q++LGTIK SNLCTEI++ TS E AVCNLASI L ++ F KL
Sbjct: 202 RKNPQKHLGTIKSSNLCTEILQPTSPSEDEPGEDAVCNLASINLGNFVT-------FEKL 254
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
++V K+ + L+ +ID+N+YPV EA+ SNMRHR IG+GV GL D +R+P++ E+
Sbjct: 255 EEVVKLAVRALDNVIDLNYYPVPEAKRSNMRHRAIGLGVMGLHDYLALLRIPYESEEALD 314
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
LN +IFETI Y AL+ASCE+A G
Sbjct: 315 LNDRIFETINYYALKASCELAKERG----------------------------------- 339
Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLV 445
G+RNSLL+A PTAS +QILG S EP TSNIY RRVLSGEF VVN HL +DL
Sbjct: 340 -----GLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPVVNPHLEKDLW 394
Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
E G LYKT +EI Q+ ++D+AADR IDQ Q
Sbjct: 395 EYG-----------------------------LYKTAYEIDQRWLIDLAADRQKHIDQGQ 425
Query: 506 SLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT 540
SLN+++ ++S++F+ WK GLKT YYLRT
Sbjct: 426 SLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460
Score = 193 bits (494), Expect = 1e-53
Identities = 77/166 (46%), Positives = 97/166 (58%), Gaps = 35/166 (21%)
Query: 784 WAALKE--KIAKH--GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQV 839
+ ALK ++AK G+RNSLL+A PTAS +QILG S EP TSNIY RRVLSGEF V
Sbjct: 325 YYALKASCELAKERGGLRNSLLLAIAPTASISQILGATPSIEPITSNIYVRRVLSGEFPV 384
Query: 840 VNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 899
VN HL +DL E GL YKT +EI Q+ ++D+AA
Sbjct: 385 VNPHLEKDLWEYGL-----------------------------YKTAYEIDQRWLIDLAA 415
Query: 900 DRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRT 944
DR IDQ QSLN+++ ++S++F+ WK GLKT YYLRT
Sbjct: 416 DRQKHIDQGQSLNLFLTPPATTRDLNSLYFYAWKKGLKTL-YYLRT 460
Score = 112 bits (282), Expect = 6e-26
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 59
R GA A+YLE WH DI +FL+LKKN G E RARDLFYG+WIPD FM RVE D W +
Sbjct: 125 RKGAGAVYLEIWHPDIEEFLDLKKNNGDERRRARDLFYGVWIPDLFMERVERD-LWRKI 182
Score = 75.7 bits (187), Expect = 4e-14
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 641
+GV GL D +R+P++ E+ LN +IFETI Y AL+ASCE+A G
Sbjct: 291 LGVMGLHDYLALLRIPYESEEALDLNDRIFETINYYALKASCELAKERG 339
Score = 67.2 bits (165), Expect = 2e-11
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 658 YDM-WGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNL 716
D+ +GV DL+ ++ LW IL+SQ ETG PY+L+KD CNRK+ Q++L
Sbjct: 158 RDLFYGVWIPDLF-MERVER-------DLWRKILESQFETGYPYILFKDTCNRKNPQKHL 209
Query: 717 EVI 719
I
Sbjct: 210 GTI 212
>gnl|CDD|235966 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 965
Score = 450 bits (1160), Expect = e-142
Identities = 208/519 (40%), Positives = 296/519 (57%), Gaps = 21/519 (4%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA YLE WH DI +FLEL+KNTG + R D+ WIPD FM+RV D +W+L
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFS 506
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEA-----EGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
P+ L D +G+ F++ Y YEA E K +++PA LW +L ETG P++ +
Sbjct: 507 PSEVPDLHDLFGKAFEEAYTAYEAKAARGEIKLFKKIPAVDLWRKMLSMLFETGHPWITF 566
Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
KD CN +S QQ++G + SNLCTEI TS DE+AVCNL S+ L +I + KL
Sbjct: 567 KDPCNLRSPQQHVGVVHSSNLCTEITLNTSDDEIAVCNLGSVNLVAHIKD-GAKLDHEKL 625
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
K + L+ +ID+N+Y V +ARNSN+RHRP+G+G+ G D +R+P+ +E+
Sbjct: 626 KRTVSTAMRMLDNVIDINYYAVPKARNSNLRHRPVGLGIMGFQDALYLLRIPYASDEAVE 685
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYD-----------MWGVTP 374
+ E + Y A+ AS E+A G Y +YEGS S+GIL D V
Sbjct: 686 FADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWSRGILPIDSLKLLAEARGGYLEVDR 745
Query: 375 TDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQ 434
+ DW AL+ +I KHG+RNS +A PTA+ + I+G ++S EP N+Y + LSGEF
Sbjct: 746 SSTLDWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFT 805
Query: 435 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 494
VVN +L+RDL GLWD+ M + L +GS+Q I+ IP LK LY T +E+ + +++ A
Sbjct: 806 VVNPYLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAA 865
Query: 495 ADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
+ R +IDQ+QSLN+YMA + K+ + W GLKT YYLRT A + + T++
Sbjct: 866 SRRQKWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTG 924
Query: 555 KMANAMAS-KDARSQEEIQADQEQAMAAMICRRDNKEDC 592
+ NA++S A A C D+ DC
Sbjct: 925 AL-NAVSSGGGGAGGAAAAAAAPPAADPKACSIDDP-DC 961
Score = 186 bits (474), Expect = 3e-48
Identities = 86/215 (40%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW AL+ +I KHG+RNS +A PTA+ + I+G ++S EP N+Y + LSGEF VVN
Sbjct: 750 DWDALRARIKKHGMRNSNCMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSGEFTVVNP 809
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L+RDL GLWD+ M + L +GS+Q I+ IP LK LY T +E+ + +++ A+ R
Sbjct: 810 YLVRDLKARGLWDEVMVNDLKYFDGSLQRIDRIPADLKALYATAFEVDPRWLVEAASRRQ 869
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
+IDQ+QSLN+YMA + K+ + W GLKT YYLRT A + + T++ + N
Sbjct: 870 KWIDQAQSLNLYMAGASGKKLDETYKLAWLRGLKT-TYYLRTLGATHVEKSTVNTGAL-N 927
Query: 963 AMAS-KDTRSQEEIQADQEQAMAAMICRRDNKEDC 996
A++S A A C D+ DC
Sbjct: 928 AVSSGGGGAGGAAAAAAAPPAADPKACSIDDP-DC 961
Score = 100 bits (251), Expect = 2e-21
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA YLE WH DI +FLEL+KNTG + R D+ WIPD FM+RV D +W+L
Sbjct: 447 RKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVMEDGEWTLFS 506
Query: 61 PNACRGLSDSWGEKFDDLYKKYEA 84
P+ L D +G+ F++ Y YEA
Sbjct: 507 PSEVPDLHDLFGKAFEEAYTAYEA 530
Score = 53.8 bits (130), Expect = 4e-07
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+G+ G D +R+P+ +E+ + E + Y A+ AS E+A G Y +YEGS S
Sbjct: 662 LGIMGFQDALYLLRIPYASDEAVEFADRSMEAVSYYAIWASTELAEERGRYSSYEGSLWS 721
Query: 653 QGILQYD 659
+GIL D
Sbjct: 722 RGILPID 728
Score = 38.4 bits (90), Expect = 0.020
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 674 LKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+K+ + + LW +L ETG P++ +KD CN +S QQ++ V+
Sbjct: 537 IKLFKKIPAVDLWRKMLSMLFETGHPWITFKDPCNLRSPQQHVGVV 582
>gnl|CDD|223287 COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide
transport and metabolism].
Length = 651
Score = 425 bits (1094), Expect = e-137
Identities = 160/471 (33%), Positives = 233/471 (49%), Gaps = 48/471 (10%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL+ WH DI +FL+ K+N G E RA D+ G+WIPD FM+R + W+L
Sbjct: 215 RRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P D +G +F++ + G +++ AR+L+ + ++ ETG PY+++ D N
Sbjct: 275 PRDGYEAPDVYGAEFEEYAEYEADPGIRKKRIKARELFDKLAEAAFETGDPYLIFVDTLN 334
Query: 211 RKSNQ-QNLGTIKCSNLCTEIVEYTSKD-------EVAVCNLASIALNMYINPADKTYNF 262
R++ + G I+ SNLC+EI++ T E A CNL SI L ++ D
Sbjct: 335 RRNPNAEGGGAIRASNLCSEILQRTKPLSLEQPLGEDASCNLGSINLAKFVKYGD----- 389
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
L ++ + + L+ +ID+N YPV EA +N R IG+GV GLADL Q+ +P+ E
Sbjct: 390 -GLAELVAVAVRALDNVIDLNPYPVPEAERANAESRAIGLGVMGLADLLAQLGIPYGSEE 448
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
+ N ++FE I Y AL+AS E+A GPY +EGS ++GIL D + DW
Sbjct: 449 ALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWARGILPIDYPRLFGIT-EDWEK 507
Query: 383 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 442
L+E I KHG+RNS L A PT S + I G EP + +Y R G F V L
Sbjct: 508 LREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVVPPLFE 567
Query: 443 DLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFID 502
DL+ +EI +DM A +ID
Sbjct: 568 DLLAYYGL-------------------------------AYEIDPLWHIDMQAAAQRWID 596
Query: 503 QSQSLNIYMAEINYAK-MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 552
Q S + + K ++ + + WKLGLKT YY RT AA + +D
Sbjct: 597 QGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD 646
Score = 148 bits (376), Expect = 4e-37
Identities = 52/176 (29%), Positives = 69/176 (39%), Gaps = 33/176 (18%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
DW L+E I KHG+RNS L A PT S + I G EP + +Y R G F V
Sbjct: 503 EDWEKLREDIKKHGLRNSYLTAIAPTGSISYIAGTTSGIEPIFALVYFRETKGGRFYYVV 562
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADR 901
L DL+ +EI +DM A
Sbjct: 563 PPLFEDLLAYYGL-------------------------------AYEIDPLWHIDMQAAA 591
Query: 902 GAFIDQSQSLNIYMAEINYAK-MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID 956
+IDQ S + + K ++ + + WKLGLKT YY RT AA + +D
Sbjct: 592 QRWIDQGISKTLNLPNTATTKDLNKAYLYAWKLGLKT-TYYRRTSQAAQVLTVVLD 646
Score = 99.0 bits (247), Expect = 4e-21
Identities = 36/95 (37%), Positives = 52/95 (54%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL+ WH DI +FL+ K+N G E RA D+ G+WIPD FM+R + W+L
Sbjct: 215 RRGAQAVYLDIWHPDIEEFLDAKRNNGDEILRAFDISVGVWIPDLFMKRAKEGEDWTLFS 274
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAF 95
P D +G +F++ + G+ R A
Sbjct: 275 PRDGYEAPDVYGAEFEEYAEYEADPGIRKKRIKAR 309
Score = 83.2 bits (206), Expect = 3e-16
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV GLADL Q+ +P+ E+ N ++FE I Y AL+AS E+A GPY +EGS +
Sbjct: 428 LGVMGLADLLAQLGIPYGSEEALKFNDRLFEYIAYYALKASAELAKERGPYPYFEGSRWA 487
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+GIL D + DW L+ +GL
Sbjct: 488 RGILPIDYPRLFGIT-EDWEKLREDIKKHGL 517
Score = 42.4 bits (100), Expect = 0.001
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
+ +L+ + ++ ETG PY+++ D NR++
Sbjct: 301 IRKKRIKARELFDKLAEAAFETGDPYLIFVDTLNRRNPNAEGG 343
>gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 1046
Score = 362 bits (931), Expect = e-109
Identities = 186/496 (37%), Positives = 279/496 (56%), Gaps = 27/496 (5%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA +YLE WH D DFLEL+KNTG E R D+ WIPD F +R++ W+L
Sbjct: 530 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFS 589
Query: 151 PNTCRGLSDSWGEKFDDLYKKYE-----AEGKFIRQVPARKLWFAILDSQIETGTPYMLY 205
P+ GL +++GE+F+ LY++YE E + ++V A LW +L ETG P+M +
Sbjct: 590 PDDVPGLHEAYGEEFEKLYEEYERKVDTGEIRLYKKVEAEDLWRKMLSMLYETGHPWMTF 649
Query: 206 KDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKL 265
KD N +S Q + G ++CSNLCTEI+ S+ E AVCNL SI L +I + KL
Sbjct: 650 KDPSNIRSAQDHKGVVRCSNLCTEILLNCSETETAVCNLGSINLVEHIVNDG--LDEEKL 707
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
+ I + L+ +ID+NFYP +EA+ +N+ HR IG+GV G D ++ + + E+
Sbjct: 708 SETISIAIRILDNVIDINFYPTKEAKEANLAHRAIGLGVMGFQDALYKLNISYASQEAVE 767
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------------VT 373
E I Y A+ AS +A G Y +Y+GS +G L D +
Sbjct: 768 FADYSSELIAYYAILASSLLAKERGTYSSYKGSKWDRGYLPIDTIELLKEYRGEANLLMD 827
Query: 374 PTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 433
+ DW ++ I ++G+RNS L+A PTA+ + I+G +S EP +++ + LSGEF
Sbjct: 828 TSSRKDWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEF 887
Query: 434 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 493
+ N +L+ L +LG+WD +M D L +GS+ +IE IP LK ++ T +EI + +++
Sbjct: 888 TIPNVYLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIEC 947
Query: 494 AADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDK 553
A+ R +ID QSLN+Y+AE + K+S+M+ WK GLKT YYLR+ A + + +D
Sbjct: 948 ASRRQKWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDI 1006
Query: 554 TK-------MANAMAS 562
K M N AS
Sbjct: 1007 NKRGIQPRWMKNKSAS 1022
Score = 146 bits (370), Expect = 1e-35
Identities = 74/191 (38%), Positives = 116/191 (60%), Gaps = 8/191 (4%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW ++ I ++G+RNS L+A PTA+ + I+G +S EP +++ + LSGEF + N
Sbjct: 833 DWEPVRSLIKEYGMRNSQLMAIAPTATISNIIGVTQSIEPTYKHLFVKSNLSGEFTIPNV 892
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L+ L +LG+WD +M D L +GS+ +IE IP LK ++ T +EI + +++ A+ R
Sbjct: 893 YLIEKLKKLGIWDADMLDDLKYFDGSLLEIERIPDHLKKIFLTAFEIEPEWIIECASRRQ 952
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK--- 959
+ID QSLN+Y+AE + K+S+M+ WK GLKT YYLR+ A + + +D K
Sbjct: 953 KWIDMGQSLNLYLAEPDGKKLSNMYLTAWKKGLKT-TYYLRSSAATSVEKSFVDINKRGI 1011
Query: 960 ----MANAMAS 966
M N AS
Sbjct: 1012 QPRWMKNKSAS 1022
Score = 95.8 bits (238), Expect = 6e-20
Identities = 39/83 (46%), Positives = 54/83 (65%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA +YLE WH D DFLEL+KNTG E R D+ WIPD F +R++ W+L
Sbjct: 530 RKGAVCVYLEVWHLDYEDFLELRKNTGDERRRTHDINTASWIPDLFFKRLQQKGTWTLFS 589
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GL +++GE+F+ LY++YE
Sbjct: 590 PDDVPGLHEAYGEEFEKLYEEYE 612
Score = 36.5 bits (84), Expect = 0.080
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV G D ++ + + E+ E I Y A+ AS +A G Y +Y+GS
Sbjct: 744 LGVMGFQDALYKLNISYASQEAVEFADYSSELIAYYAILASSLLAKERGTYSSYKGSKWD 803
Query: 653 QGILQYD 659
+G L D
Sbjct: 804 RGYLPID 810
Score = 32.2 bits (73), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 685 LWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
LW +L ETG P+M +KD N +S Q + V+
Sbjct: 631 LWRKMLSMLYETGHPWMTFKDPSNIRSAQDHKGVV 665
>gnl|CDD|180610 PRK06539, PRK06539, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 822
Score = 318 bits (815), Expect = 1e-94
Identities = 168/483 (34%), Positives = 272/483 (56%), Gaps = 21/483 (4%)
Query: 93 GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 152
GA Y+E WH D +FL+L++N+G R R +WI DEFM+RV++D W L P
Sbjct: 302 GALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPL 361
Query: 153 TCRGLSDSWGEKFDDLYKKY--EAEG---KFIRQVPARKLWFAILDSQIETGTPYMLYKD 207
L++ +G+ F Y +Y +AE + +++ AR+ + AIL S T P++ +KD
Sbjct: 362 ETPDLNELYGKAFSKRYAQYVEQAEAGRIRMFKRITAREQFRAILMSLQTTSHPWLTWKD 421
Query: 208 ACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKD 267
N ++ N GTI SNLCTEI +D V+VCNLASI L+ ++ AD ++ +L++
Sbjct: 422 TINNRALNNNTGTIHLSNLCTEICLPQDRDNVSVCNLASINLSRHL--ADGELDWAQLEE 479
Query: 268 VAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLN 327
++ + L+ +ID+ V+EA SN ++R IG+GV G D+ ++ ++ E+ L
Sbjct: 480 STRLAVRQLDNLIDITASSVKEADFSNQQNRAIGLGVMGFTDMVERLGYSYESEEAYDLI 539
Query: 328 KQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTD----------- 376
+I E I Y A++ S ++AA G Y +EGS S+G++ D + D
Sbjct: 540 DRIMEHISYAAIDESADLAAERGAYPNFEGSRWSRGMVPVDSIALLEADRGVPVDVNRTT 599
Query: 377 LWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVV 436
DW AL+ K+ + G+RN+ L+A PTAS + G +P S I+SR SG+F V
Sbjct: 600 RLDWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEV 658
Query: 437 NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 496
N +L+ DL ELGLW + ++++++ + G IQ+I IP ++K LY+T +++ L++AA
Sbjct: 659 NRNLVADLKELGLW-ETVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAAR 717
Query: 497 RGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKM 556
++DQ+ S N+Y+ + M ++ W++G+KT YYL KP A Q T+ K
Sbjct: 718 AQKWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKS 776
Query: 557 ANA 559
A
Sbjct: 777 AER 779
Score = 131 bits (330), Expect = 5e-31
Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 3/181 (1%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW AL+ K+ + G+RN+ L+A PTAS + G +P S I+SR SG+F VN
Sbjct: 602 DWDALRAKV-RGGMRNATLMAIAPTASIGLVAGTTPGLDPQFSQIFSRSTSSGKFLEVNR 660
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+L+ DL ELGLW+ ++++++ + G IQ+I IP ++K LY+T +++ L++AA
Sbjct: 661 NLVADLKELGLWE-TVREEILRSQGDIQEIAAIPDEIKALYRTSFQLSPYAFLEVAARAQ 719
Query: 903 AFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 962
++DQ+ S N+Y+ + M ++ W++G+KT YYL KP A Q T+ K A
Sbjct: 720 KWVDQAISRNMYLESRDIGDMMDIYTAAWEMGVKT-TYYLHMKPRHTAEQSTVKVNKSAE 778
Query: 963 A 963
Sbjct: 779 R 779
Score = 70.3 bits (172), Expect = 3e-12
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 3 GAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPN 62
GA Y+E WH D +FL+L++N+G R R +WI DEFM+RV++D W L P
Sbjct: 302 GALCFYMENWHMDFPEFLDLRQNSGDPYRRTRTANTAVWISDEFMKRVQNDEDWYLFDPL 361
Query: 63 ACRGLSDSWGEKFDDLYKKY--EAEGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGKEE 120
L++ +G+ F Y +Y +AE G I F K+ T +E+
Sbjct: 362 ETPDLNELYGKAFSKRYAQYVEQAEA-----------------GRIRMF---KRITAREQ 401
Query: 121 FRA 123
FRA
Sbjct: 402 FRA 404
Score = 56.1 bits (135), Expect = 8e-08
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
N+ +GV G D+ ++ ++ E+ L +I E I Y A++ S ++AA G Y +E
Sbjct: 509 NRAIGLGVMGFTDMVERLGYSYESEEAYDLIDRIMEHISYAAIDESADLAAERGAYPNFE 568
Query: 648 GSPVSQGILQYDMWGVTPTD 667
GS S+G++ D + D
Sbjct: 569 GSRWSRGMVPVDSIALLEAD 588
>gnl|CDD|236378 PRK09102, PRK09102, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 601
Score = 289 bits (743), Expect = 2e-86
Identities = 159/497 (31%), Positives = 248/497 (49%), Gaps = 70/497 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G+FA+YL+ H +I +FL+++K TG +A +L +G+ + DEFM VE +W L+
Sbjct: 163 RRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLIS 222
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P IR V AR LW IL+++IETG PY+L+ D N
Sbjct: 223 PKD----------------------KSVIRTVKARDLWAKILETRIETGEPYLLFIDNVN 260
Query: 211 RK--SNQQNLG-TIKCSNLCTEI-----VEYTSKDEVAVCNLASIALNMYINPADKTYNF 262
R ++LG +K SNLC+EI +++ +D AVC L+S+ L Y D
Sbjct: 261 RALPEVYKDLGLKVKASNLCSEITLPTGIDHLGEDRTAVCCLSSLNLEYYDEWKD---TD 317
Query: 263 TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNE 322
++D+ + + L ID +E A+ S MR R +G+GV G +PF+
Sbjct: 318 AFIEDLMRFLDNVLQDFIDKAPDEMERAKYSAMRERSVGLGVMGFHSYLQSKMIPFESVM 377
Query: 323 SRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAA 382
++ NK+IF+ I A +AS E+A G D
Sbjct: 378 AKQWNKKIFKHIREQADKASKELAKEKGE----------------------CPDA----- 410
Query: 383 LKEKIAKHGV--RNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHH 439
A +GV R S +A PTAS + ILGN + EP +N Y+ + L G F V N +
Sbjct: 411 -----AGYGVMRRFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKY 465
Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
L + L E G D + ++ N GS+Q ++ + ++ KD++KT +EI Q+ ++++AADR
Sbjct: 466 LEKLLEEKGKDTDEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQK 525
Query: 500 FIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMAN 558
+IDQ+QSLN+++ A + ++ +HF WK G+K+ +YY R+K A + + D K
Sbjct: 526 YIDQAQSLNLFLPANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSHDVLKKRL 584
Query: 559 AMASKDARSQEEIQADQ 575
S R +E A Q
Sbjct: 585 VEKSAFNRDYDECLACQ 601
Score = 140 bits (356), Expect = 1e-34
Identities = 66/185 (35%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 797 RNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWD 855
R S +A PTAS + ILGN + EP +N Y+ + L G F V N +L + L E G
Sbjct: 418 RFSTKMAIAPTASISIILGNTSPGIEPIAANYYTHKTLKGSFTVKNKYLEKLLEEKGKDT 477
Query: 856 DNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM 915
D + ++ N GS+Q ++ + ++ KD++KT +EI Q+ ++++AADR +IDQ+QSLN+++
Sbjct: 478 DEVWSSILTNEGSVQHLDFLSEEEKDVFKTAFEIDQRWIIELAADRQKYIDQAQSLNLFL 537
Query: 916 -AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEE 974
A + ++ +HF WK G+K+ +YY R+K A + + D K S R +E
Sbjct: 538 PANVPKRDLNKLHFEAWKKGVKS-LYYQRSKSVQRADKVSHDVLKKRLVEKSAFNRDYDE 596
Query: 975 IQADQ 979
A Q
Sbjct: 597 CLACQ 601
Score = 68.1 bits (167), Expect = 1e-11
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R G+FA+YL+ H +I +FL+++K TG +A +L +G+ + DEFM VE +W L+
Sbjct: 163 RRGSFAVYLDIEHPEIEEFLDIRKPTGDPNRKALNLHHGVCVTDEFMEAVEDGDEWDLIS 222
Query: 61 P 61
P
Sbjct: 223 P 223
Score = 43.4 bits (103), Expect = 6e-04
Identities = 32/132 (24%), Positives = 53/132 (40%), Gaps = 35/132 (26%)
Query: 519 MSSM---HFHGWK---LGLKTGMYYLRTKPAANAIQFTIDKTK--MANAMASKDARSQEE 570
+SS+ ++ WK ++ M +L N +Q IDK M A S
Sbjct: 302 LSSLNLEYYDEWKDTDAFIEDLMRFLD-----NVLQDFIDKAPDEMERAKYS-------- 348
Query: 571 IQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 630
A +E+++ +GV G +PF+ ++ NK+IF+ I A
Sbjct: 349 --AMRERSVG------------LGVMGFHSYLQSKMIPFESVMAKQWNKKIFKHIREQAD 394
Query: 631 EASCEIAARDGP 642
+AS E+A G
Sbjct: 395 KASKELAKEKGE 406
Score = 38.4 bits (90), Expect = 0.021
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 660 MWGVTPTDLW--------DWAAL-----KVLALVYGLKLWFAILDSQIETGTPYMLYKDA 706
GV TD + +W + V+ V LW IL+++IETG PY+L+ D
Sbjct: 199 HHGVCVTDEFMEAVEDGDEWDLISPKDKSVIRTVKARDLWAKILETRIETGEPYLLFIDN 258
Query: 707 CNR 709
NR
Sbjct: 259 VNR 261
>gnl|CDD|236266 PRK08447, PRK08447, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 789
Score = 283 bits (726), Expect = 2e-82
Identities = 171/539 (31%), Positives = 259/539 (48%), Gaps = 120/539 (22%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YLEPWH DI DF++L+KN+G+E RA DLF LWI D FM+RVE DA W+L
Sbjct: 289 RKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFD 348
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIR-QVPARKLWFAILDSQIETGTPYMLYKDAC 209
P C+ L++ +GE+F+ Y +YE + K I+ + A++LW IL + ETG P++ +KD
Sbjct: 349 PYECKDLTELYGEEFEKRYLEYEKDEKIIKEYINAKELWKKILTNYFETGLPFLCFKDNA 408
Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTS--------------------KDEVAV-------- 241
NR + + G I+ SNLCTEI + T+ ++ V V
Sbjct: 409 NRANPNAHAGIIRSSNLCTEIFQNTAPNHYKIKIEFEDGSIEFFEEEELVTVDSGITKKA 468
Query: 242 ----------------------------CNLASIALNMYINPADKTYNFTKLKDVAKIVT 273
CNLASI L+ K ++ V I
Sbjct: 469 KKITSLDSLKGKKIYIVEKEKKDGKTAVCNLASINLS-------KINTKEDIERVVPIAI 521
Query: 274 KNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFET 333
+ L+ +ID+NFYP + + +N++ R IG+GV G A + + ++ + E +I E
Sbjct: 522 RMLDNVIDLNFYPNRKVKATNLKSRAIGLGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQ 581
Query: 334 IYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------VTPTDLW----DWAAL 383
I Y A++AS +A G Y +EGS S+GI D V L+ DW L
Sbjct: 582 ISYNAIDASSNLALEKGVYPDFEGSNWSKGIFPIDKANEEAKKLVERGGLFDSACDWEGL 641
Query: 384 KEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV----LSGEFQVVNHH 439
+EK+ K G+RN L+A PT+S + ++G ++ EP +Y R+ LSG VV +
Sbjct: 642 REKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEP----VYKRKWFEENLSGLIPVVVPN 697
Query: 440 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 499
L + W Y +++ QK ++ AA R
Sbjct: 698 LSPE-----TW--------------------------QYYTPAYDLDQKDLIKAAAVRQK 726
Query: 500 FIDQSQSLNIYM----AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKT 554
+IDQ QSLNI++ A Y ++ ++ WKLGLK+ YYLR++ + D++
Sbjct: 727 WIDQGQSLNIFLSLDKASGKY--LNEIYTLAWKLGLKS-TYYLRSESPESEEVSVADRS 782
Score = 117 bits (296), Expect = 5e-27
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YLEPWH DI DF++L+KN+G+E RA DLF LWI D FM+RVE DA W+L
Sbjct: 289 RKGAIAVYLEPWHMDISDFIDLRKNSGEERRRAHDLFPALWINDLFMKRVEEDAMWTLFD 348
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P C+ L++ +GE+F+ Y +YE
Sbjct: 349 PYECKDLTELYGEEFEKRYLEYE 371
Score = 74.4 bits (183), Expect = 2e-13
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 46/184 (25%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRV----LSGEFQ 838
DW L+EK+ K G+RN L+A PT+S + ++G ++ EP +Y R+ LSG
Sbjct: 637 DWEGLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEP----VYKRKWFEENLSGLIP 692
Query: 839 VVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMA 898
VV +L + W Y +++ QK ++ A
Sbjct: 693 VVVPNLSPET-----WQ--------------------------YYTPAYDLDQKDLIKAA 721
Query: 899 ADRGAFIDQSQSLNIYM----AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFT 954
A R +IDQ QSLNI++ A Y ++ ++ WKLGLK+ YYLR++ +
Sbjct: 722 AVRQKWIDQGQSLNIFLSLDKASGKY--LNEIYTLAWKLGLKS-TYYLRSESPESEEVSV 778
Query: 955 IDKT 958
D++
Sbjct: 779 ADRS 782
Score = 44.7 bits (106), Expect = 3e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV G A + + ++ + E +I E I Y A++AS +A G Y +EGS S
Sbjct: 550 LGVMGEAQMLAEHKIAWGSKEHLEKIDEIMEQISYNAIDASSNLALEKGVYPDFEGSNWS 609
Query: 653 QGILQYDM 660
+GI D
Sbjct: 610 KGIFPIDK 617
Score = 32.4 bits (74), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 685 LWFAILDSQIETGTPYMLYKDACNR 709
LW IL + ETG P++ +KD NR
Sbjct: 386 LWKKILTNYFETGLPFLCFKDNANR 410
>gnl|CDD|181700 PRK09209, PRK09209, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 761
Score = 251 bits (642), Expect = 5e-71
Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 75/482 (15%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL+ WH DI FL+L+ N G E RA D+F G+ IPD FM VE W L
Sbjct: 310 RKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFD 369
Query: 151 PNTCR-----GLSDSWGEKFDDLY--KKYE---AEGKFIRQ-VPARKLWFAILDSQIETG 199
P+ + L D + EK D +KYE A+ + R+ V A + I+ SQ+ETG
Sbjct: 370 PHEVKKVMGWYLEDFYDEKKGDGSFREKYEECVADERLSRKTVKAIDIMKRIMVSQLETG 429
Query: 200 TPYMLYKDACNRKSNQQNLGTIKCSNLCTEIV----------EYTSKDEV---------A 240
P+M Y+D NR + ++ G I SNLCTEI+ E S ++
Sbjct: 430 NPFMFYRDEVNRMNPNKHEGMIYSSNLCTEIMQNMSPTVMIQEIISGGQIVITKQPGDFV 489
Query: 241 VCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPI 300
VCNL+SI L + AD L+ + I + L+ +ID+N PV +A +N ++R I
Sbjct: 490 VCNLSSINLGRAV-TAD------VLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAI 542
Query: 301 GIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPV 360
G+G G L + ++ E+ +++E I Y ++AS E+A G Y ++GS
Sbjct: 543 GLGTFGWHHLLALKGIAWESEEAVQYADELYERINYLTIQASMELAKEKGAYPVFKGSDW 602
Query: 361 SQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYT 420
G ++ G W L ++A++GVRN+ L+A P STAQI G+ S +P
Sbjct: 603 QTGEY-FERRGYNSP---QWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIY 658
Query: 421 SNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY- 479
S Y V DL Y
Sbjct: 659 SAFYYEEKKDYRRPVT----APDLSLDTWP---------------------------YYE 687
Query: 480 KTVWEIPQKTVLDMAADRGAFIDQSQSLNIY-MAEINYAKMSSMHFHGWKLGLKTGMYYL 538
K +++ Q + A R +DQS S N Y + I +++ +H WK GLKT YY+
Sbjct: 688 KGAYKVDQFWSIRQNAARQRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYV 746
Query: 539 RT 540
R+
Sbjct: 747 RS 748
Score = 86.3 bits (214), Expect = 4e-17
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL+ WH DI FL+L+ N G E RA D+F G+ IPD FM VE W L
Sbjct: 310 RKGAIAVYLDVWHKDIESFLDLRLNNGDERLRAHDVFTGVCIPDLFMEAVERRGDWYLFD 369
Query: 61 PNACR-----GLSDSWGEKFDDLY--KKYEA 84
P+ + L D + EK D +KYE
Sbjct: 370 PHEVKKVMGWYLEDFYDEKKGDGSFREKYEE 400
Score = 73.2 bits (180), Expect = 4e-13
Identities = 45/164 (27%), Positives = 65/164 (39%), Gaps = 34/164 (20%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
W L ++A++GVRN+ L+A P STAQI G+ S +P S Y V
Sbjct: 617 QWDELAAQVAENGVRNAYLMAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVT-- 674
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLY-KTVWEIPQKTVLDMAADR 901
DL Y K +++ Q + A R
Sbjct: 675 --APDLSLDTWP---------------------------YYEKGAYKVDQFWSIRQNAAR 705
Query: 902 GAFIDQSQSLNIY-MAEINYAKMSSMHFHGWKLGLKTGMYYLRT 944
+DQS S N Y + I +++ +H WK GLKT YY+R+
Sbjct: 706 QRHVDQSISFNFYVPSTIRASELLDLHMTAWKEGLKT-TYYVRS 748
Score = 41.3 bits (97), Expect = 0.003
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 689 ILDSQIETGTPYMLYKDACNRK 710
I+ SQ+ETG P+M Y+D NR
Sbjct: 421 IMVSQLETGNPFMFYRDEVNRM 442
Score = 31.6 bits (72), Expect = 2.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 613 ESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
E+ +++E I Y ++AS E+A G Y ++GS
Sbjct: 564 EAVQYADELYERINYLTIQASMELAKEKGAYPVFKGS 600
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 842
Score = 240 bits (614), Expect = 9e-67
Identities = 150/486 (30%), Positives = 236/486 (48%), Gaps = 79/486 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 148
R GA A+YL+ WH DI +FL+L+ N G + +A D+F + PD F + V D W L
Sbjct: 389 RQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSWYL 448
Query: 149 MCPN---TCRG--LSDSWGEKFDDLYKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPY 202
CP+ T +G L D +GE+++ Y + + R +P + L IL S +ETGTP+
Sbjct: 449 FCPHEILTVKGYALEDYYGEEWEKRYLDCVNDARISKRSIPIKDLVRLILKSAVETGTPF 508
Query: 203 MLYKDACNRKSNQQNLGTIKCSNLCTEI-----------------------VEYTSKDEV 239
+D NR + ++ G I CSNLCTEI V T +
Sbjct: 509 TFNRDTVNRANPNKHKGMIYCSNLCTEIAQNMSAIETVSTEIETEDGDTVVVTTTRPGDF 568
Query: 240 AVCNLASIAL-NMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHR 298
VCNLAS++L N+ + + +L++V + V + L+ +ID+NFYPV A+ +N R+R
Sbjct: 569 VVCNLASLSLGNIDLE------DEEELEEVVRTVVRALDNVIDLNFYPVPYAQITNKRYR 622
Query: 299 PIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 358
IG+GV G + + ++ E ++FE I Y A++AS EIA G Y +EGS
Sbjct: 623 SIGLGVSGYHHALAKNGIRWESEEHLEFADRVFERINYAAIKASMEIAKEKGAYGYFEGS 682
Query: 359 PVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 418
G + G T +W L ++A++G+RN+ L+A PT+ST+ I G +P
Sbjct: 683 DWQTGAY-FRKRGYTSE---EWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDP 738
Query: 419 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLK 476
V+ + L + G++ + + K
Sbjct: 739 ----------------VMKRYFLEE-----------------KKGALMPRVAPELSDKTF 765
Query: 477 DLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGM 535
LYK I QK + A R IDQ+QS+N+Y+ E ++ ++ W+ G+KT +
Sbjct: 766 WLYKNAHLIDQKWSIRAAGVRQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-I 824
Query: 536 YYLRTK 541
YY+R+K
Sbjct: 825 YYVRSK 830
Score = 73.6 bits (181), Expect = 3e-13
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESD--AQWSL 58
R GA A+YL+ WH DI +FL+L+ N G + +A D+F + PD F + V D W L
Sbjct: 389 RQGAVAVYLDVWHKDIPEFLQLRTNNGDDRMKAHDVFPAVCYPDLFWKMVRDDINQSWYL 448
Query: 59 MCPNAC-----RGLSDSWGEKFDDLYKK 81
CP+ L D +GE+++ Y
Sbjct: 449 FCPHEILTVKGYALEDYYGEEWEKRYLD 476
Score = 66.3 bits (162), Expect = 6e-11
Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 37/166 (22%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
+W L ++A++G+RN+ L+A PT+ST+ I G +P V+
Sbjct: 699 EWQRLAREVAENGMRNAYLLAVAPTSSTSIIAGTTAGVDP----------------VMKR 742
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSI--QDIEGIPQKLKDLYKTVWEIPQKTVLDMAAD 900
+ L + G++ + + K LYK I QK + A
Sbjct: 743 YFLEE-----------------KKGALMPRVAPELSDKTFWLYKNAHLIDQKWSIRAAGV 785
Query: 901 RGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
R IDQ+QS+N+Y+ E ++ ++ W+ G+KT +YY+R+K
Sbjct: 786 RQRHIDQAQSVNLYITNEFTMRQVLDLYLLAWEEGVKT-IYYVRSK 830
Score = 40.1 bits (94), Expect = 0.007
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 620 QIFETIYYGALEASCEIAARDGPYQTYEGS 649
++FE I Y A++AS EIA G Y +EGS
Sbjct: 653 RVFERINYAAIKASMEIAKEKGAYGYFEGS 682
Score = 31.3 bits (71), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 689 ILDSQIETGTPYMLYKDACNR 709
IL S +ETGTP+ +D NR
Sbjct: 497 ILKSAVETGTPFTFNRDTVNR 517
>gnl|CDD|233900 TIGR02504, NrdJ_Z, ribonucleoside-diphosphate reductase,
adenosylcobalamin-dependent. This model represents a
group of adenosylcobalamin(B12)-dependent ribonucleotide
reductases (Class II RNRs) related to the characterized
species from Pyrococcus , Thermoplasma , Corynebacterium
and Deinococcus. RNR's are responsible for the
conversion of the ribose sugar of RNA into the
deoxyribose sugar of DNA. This is the rate-limiting step
of DNA biosynthesis. This model identifies genes in a
wide range of deeply branching bacteria. All are
structurally related to the class I (non-heme iron
dependent) RNRs. In most species this gene is known as
NrdJ, while in mycobacteria it is called NrdZ [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 589
Score = 218 bits (558), Expect = 5e-61
Identities = 138/453 (30%), Positives = 225/453 (49%), Gaps = 41/453 (9%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA L+ WH DI +F+E KK GK ++ G+ D FM VE+D ++ L
Sbjct: 152 RRGAQMGILDVWHPDIEEFIEAKKKEGK--LTNFNISVGVT--DAFMEAVEADEEYKLRN 207
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P T GE+ ++L +K E + ++VPAR+LW I+++ ++ P +L+ D N
Sbjct: 208 PRT--------GEEIEELAEKREPKLVVYKEVPARELWDKIVEAAWKSAEPGLLFIDTIN 259
Query: 211 RKSNQQNLGTIKCSNLCTEI--VEYTSKDEVAVCNLASIAL-NMYINPA-DKTYNFTKLK 266
+ +N LG I +N C E + Y S CNL SI L N +++F +L+
Sbjct: 260 KWNNLPYLGRINATNPCGEQPLLPYES------CNLGSINLAKFVKNDFGGASFDFERLR 313
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
+V ++ T+ L+ +ID+N +P+ E + + R IG+G+ GLADL I++ +P+D E+R
Sbjct: 314 EVVRLATRFLDNVIDLNRFPLPEIAEATKKTRRIGLGIMGLADLLIKLGIPYDSEEARAF 373
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
+++ I A AS E+A G + +E S +Y M V A L+E
Sbjct: 374 AEELMRFIADAAYRASAELAKERGAFPLFEAS-------KYLMGKVARIPSALPAELREA 426
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-SGEFQVVNHHLLRDLV 445
IAK+G+RN+ L PT + + I G + EP + +Y R V GE VN + L
Sbjct: 427 IAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPLVELALR 486
Query: 446 ELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQ 505
ELG + D + + G+++ +P++L ++ T +I + + M A ++D S
Sbjct: 487 ELGYYSDEIVKIEVAEKGTVEGAPDLPEELPKVFVTANDISPEDHVLMQAAIQPWVDSSI 546
Query: 506 SLNIYM------AEINYAKMSSMHFHGWKLGLK 532
S I M ++ + WKLGLK
Sbjct: 547 SKTINMPSDATVEDVKAV-----YLEAWKLGLK 574
Score = 73.9 bits (182), Expect = 2e-13
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 12/159 (7%)
Query: 785 AALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVL-SGEFQVVNHH 843
A L+E IAK+G+RN+ L PT + + I G + EP + +Y R V GE VN
Sbjct: 421 AELREAIAKYGIRNAQLTTIAPTGTISLIAGTSSGIEPVFALVYFRNVTVGGELLEVNPL 480
Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
+ L ELG + D + + G+++ +P++L ++ T +I + + M A
Sbjct: 481 VELALRELGYYSDEIVKIEVAEKGTVEGAPDLPEELPKVFVTANDISPEDHVLMQAAIQP 540
Query: 904 FIDQSQSLNIYM------AEINYAKMSSMHFHGWKLGLK 936
++D S S I M ++ + WKLGLK
Sbjct: 541 WVDSSISKTINMPSDATVEDVKAV-----YLEAWKLGLK 574
Score = 55.8 bits (135), Expect = 1e-07
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+G+ GLADL I++ +P+D E+R +++ I A AS E+A G + +E S
Sbjct: 349 LGIMGLADLLIKLGIPYDSEEARAFAEELMRFIADAAYRASAELAKERGAFPLFEAS--- 405
Query: 653 QGILQYDMWGVT------PTDLWDWAA 673
+Y M V P +L + A
Sbjct: 406 ----KYLMGKVARIPSALPAELREAIA 428
Score = 38.8 bits (91), Expect = 0.014
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 58
R GA L+ WH DI +F+E KK GK ++ G+ D FM VE+D ++ L
Sbjct: 152 RRGAQMGILDVWHPDIEEFIEAKKKEGK--LTNFNISVGVT--DAFMEAVEADEEYKL 205
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 220 bits (562), Expect = 2e-60
Identities = 137/485 (28%), Positives = 219/485 (45%), Gaps = 78/485 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R G AI L+ WH DI +FL+LK N G + +A D+F G+ PD FM+R+E WSL
Sbjct: 312 RKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFD 371
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFI----------RQVPARKLWFAILDSQIETGT 200
P+ + + E + D + E K++ R VP + I+ S +ETGT
Sbjct: 372 PHEIKKVKGYSLEDYYDEEDRKEFTKKYLECEEDTNIPRRTVPVLDIMKKIMKSAVETGT 431
Query: 201 PYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA-------------------- 240
P++ ++D N+ + ++ G I SNLC EI + S+ E+
Sbjct: 432 PFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEIIDENGYYEVVQKIKAG 491
Query: 241 ---VCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRH 297
CNL SI L N D+ +L++V + L+ +I +N+YPV EA ++ ++
Sbjct: 492 DMVTCNLNSIVLG---NVDDE-----ELEEVIPTQIRMLDNVISLNYYPVPEAEITSDKY 543
Query: 298 RPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 357
R IG+G G + ++ ++ +E +I+E I Y A++AS E+A G Y ++G
Sbjct: 544 RAIGLGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKG 603
Query: 358 SPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 417
S G ++ G W LKE+I K+G+RN + A PT ST+ I +
Sbjct: 604 SEWETGKY-FERRGYNSE---RWKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGID 659
Query: 418 PYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
P ++ R + + DL E W
Sbjct: 660 P----VFKRFFMEEKKGSFTPKTAPDLNEENFW--------------------------- 688
Query: 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMY 536
YK I Q+ + R IDQ+QS N+Y+ E ++ +++ WK G+KT +Y
Sbjct: 689 YYKEAHTIDQQWSIKACGVRQRHIDQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IY 747
Query: 537 YLRTK 541
Y+R K
Sbjct: 748 YVRNK 752
Score = 79.9 bits (197), Expect = 4e-15
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R G AI L+ WH DI +FL+LK N G + +A D+F G+ PD FM+R+E WSL
Sbjct: 312 RKGGAAITLDIWHKDIPEFLDLKTNNGDDRRKAHDIFPGVSYPDLFMKRLEKRENWSLFD 371
Query: 61 P---NACRG--LSDSWGEKFDDLY-KKY 82
P +G L D + E+ + KKY
Sbjct: 372 PHEIKKVKGYSLEDYYDEEDRKEFTKKY 399
Score = 67.9 bits (166), Expect = 2e-11
Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 33/163 (20%)
Query: 784 WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHH 843
W LKE+I K+G+RN + A PT ST+ I +P ++ R + +
Sbjct: 622 WKKLKEEIKKYGMRNGYITAVAPTGSTSNIANTTAGIDP----VFKRFFMEEKKGSFTPK 677
Query: 844 LLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGA 903
DL E W YK I Q+ + R
Sbjct: 678 TAPDLNEENFW---------------------------YYKEAHTIDQQWSIKACGVRQR 710
Query: 904 FIDQSQSLNIYMA-EINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
IDQ+QS N+Y+ E ++ +++ WK G+KT +YY+R K
Sbjct: 711 HIDQAQSFNLYITPEYKAKQILNLYIEAWKQGVKT-IYYVRNK 752
Score = 32.5 bits (74), Expect = 1.2
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+G G + ++ ++ +E +I+E I Y A++AS E+A G Y ++GS
Sbjct: 548 LGTSGYHHMLANNKIRWESDEHIKFADKIYEEIAYYAIKASMELAKEKGSYPAFKGSEWE 607
Query: 653 QG 654
G
Sbjct: 608 TG 609
Score = 31.3 bits (71), Expect = 2.9
Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 689 ILDSQIETGTPYMLYKDACNR-----------KSN-----QQNLEVIEELYNMVNKETGT 732
I+ S +ETGTP++ ++D N+ SN QN+ E L + E G
Sbjct: 422 IMKSAVETGTPFIFFRDTVNKANPNKHKGMIYSSNLCHEIAQNMSESELLEEEIIDENGY 481
Query: 733 RTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
+ K +++ N + + + D +
Sbjct: 482 YEVVQKIKAGDMVTCNLNSIVLGNVDDEELEEV 514
>gnl|CDD|153089 cd02888, RNR_II_dimer, Class II ribonucleotide reductase, dimeric
form. Ribonucleotide reductase (RNR) catalyzes the
reductive synthesis of deoxyribonucleotides from their
corresponding ribonucleotides. It provides the
precursors necessary for DNA synthesis. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs, found in
eukaryotes, bacteria, and bacteriophage, use a
diiron-tyrosyl radical. Class II RNRs, found in
bacteria, bacteriophage, algae and archaea, use coenzyme
B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found
in anaerobic bacteria, bacteriophage, and archaea, use
an FeS cluster and S-adenosylmethionine to generate a
glycyl radical. Many organisms have more than one class
of RNR present in their genomes. All three RNRs have a
ten-stranded alpha-beta barrel domain that is
structurally similar to the domain of PFL (pyruvate
formate lyase). Class II RNRs are found in bacteria that
can live under both aerobic and anaerobic conditions.
Many, but not all members of this class are found to be
homodimers. Adenosylcobalamin interacts directly with an
active site cysteine to form the reactive cysteine
radical.
Length = 464
Score = 185 bits (473), Expect = 8e-51
Identities = 101/334 (30%), Positives = 154/334 (46%), Gaps = 39/334 (11%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149
R GA L+ H DI +F++ K K + ++ + D FM VE+D W L
Sbjct: 108 RRGANMGVLDVDHPDIEEFIDAKMKEEKTVVLQNFNISVAVT--DAFMEAVENDEPWELR 165
Query: 150 CPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
P GK R VPAR+LW I+++ ++ P +L+ D
Sbjct: 166 NPRE-------------------PDTGKVYRTVPARELWDKIVEAAWDSADPGVLFIDTI 206
Query: 210 NRKSNQQNLGTIKCSNLCTEIV--EYTSKDEVAVCNLASIAL-NMYINP-ADKTYNFTKL 265
NR + LG I +N C E Y S CNL SI L NP +++F +L
Sbjct: 207 NRWNPLPGLGRINATNPCGEQPLLPYES------CNLGSINLSKFVKNPFGGASFDFERL 260
Query: 266 KDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRL 325
++ ++ + L+ +IDVN YP+ E R IG+GV GLAD+ I++ +P+D E+R
Sbjct: 261 REAVRLAVRFLDNVIDVNRYPLPEIAEETKATRRIGLGVMGLADMLIKLGIPYDSEEARE 320
Query: 326 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKE 385
L ++I I A AS E+A GP+ ++ S +Y M V + E
Sbjct: 321 LAERIMSFIRDAAYRASAELAKERGPFPLFDAS-------RYLMLKVIVNAKELPDDVLE 373
Query: 386 KIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 419
+I K+G+RN+ L PT + + I G + EP
Sbjct: 374 EIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPI 407
Score = 59.2 bits (144), Expect = 7e-09
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV GLAD+ I++ +P+D E+R L ++I I A AS E+A GP+ ++ S
Sbjct: 297 LGVMGLADMLIKLGIPYDSEEARELAERIMSFIRDAAYRASAELAKERGPFPLFDAS--- 353
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+Y M V + YG+
Sbjct: 354 ----RYLMLKVIVNAKELPDDVLEEIEKYGI 380
Score = 38.4 bits (90), Expect = 0.019
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSL 58
R GA L+ H DI +F++ K K + ++ + D FM VE+D W L
Sbjct: 108 RRGANMGVLDVDHPDIEEFIDAKMKEEKTVVLQNFNISVAVT--DAFMEAVENDEPWEL 164
Score = 36.8 bits (86), Expect = 0.058
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 770 KYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY 823
+Y M V + E+I K+G+RN+ L PT + + I G + EP
Sbjct: 354 RYLMLKVIVNAKELPDDVLEEIEKYGIRNAHLTTIAPTGTISLIAGTSSGIEPI 407
>gnl|CDD|222883 PHA02572, nrdA, ribonucleoside-diphosphate reductase subunit alpha;
Provisional.
Length = 753
Score = 178 bits (453), Expect = 2e-46
Identities = 142/496 (28%), Positives = 225/496 (45%), Gaps = 78/496 (15%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA Y WH ++ D L LK N G EE R R L YG+ I D R + +L
Sbjct: 296 RGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFS 355
Query: 151 PNTCRG-LSDSWG---EKFDDLYKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYML 204
P+ G L D++ ++F +LY+ E + +R+ + A++L+ +L + ETG Y++
Sbjct: 356 PHDVGGELYDAYFADQDRFRELYEALEKDPS-VRKKRIKAQELFLLLLKERSETGRIYIM 414
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTS-------KDEVAVCNLASIALNMYINPAD 257
+ D CN S I+ SNLC EI T + E+A+C L++I L
Sbjct: 415 FIDHCNNHSP--FKDPIRQSNLCCEIALPTKPLNHIDGEGEIALCTLSAIVL-------G 465
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
+ +++++A++ + L+ ++D YPV A + R R +G+GV A +
Sbjct: 466 NFEDQDEIEELAEVAVRALDNLLDYQDYPVPAALKAKKR-RSLGVGVTNYAHYLAKNFAS 524
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------ 371
++ + L+++ +FE + Y ++AS ++A G + + + S+G L D +
Sbjct: 525 YEDANADLVHE-LFERLQYYLIKASNKLAKEKGACEYFSDTKYSRGELPIDWYKKKVDEL 583
Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRRV 428
V P DW +L+E + K+G+RNS L A MP S++Q+ + EP S S+
Sbjct: 584 VAPKYNCDWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKE- 642
Query: 429 LSGEF-QVV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP 486
G F QVV N L+DL +L LWD K N G Y T I
Sbjct: 643 --GPFNQVVPNVETLKDLYDL-LWDLAKKG----NKG---------------YLTQVAIM 680
Query: 487 QKTVLDMAADRGAFIDQSQSLNIYMAEINYAK----MSSMH---FHGWKLGLKTGMYYLR 539
QK F+DQ+ S N NY MS M + + G KT +YY
Sbjct: 681 QK-----------FVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHN 728
Query: 540 TKPAANAIQFTIDKTK 555
T+ + I+ K
Sbjct: 729 TRDGKGTEDYEIETPK 744
Score = 62.8 bits (153), Expect = 6e-10
Identities = 58/189 (30%), Positives = 78/189 (41%), Gaps = 47/189 (24%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRRVLSGEF-Q 838
DW +L+E + K+G+RNS L A MP S++Q+ + EP S S+ G F Q
Sbjct: 591 DWESLREDLKKYGIRNSTLSALMPCESSSQVSNSTNGIEPPRGPVSIKKSKE---GPFNQ 647
Query: 839 VV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897
VV N L+DL +L LWD K N G Y T I QK
Sbjct: 648 VVPNVETLKDLYDL-LWDLAKKG----NKG---------------YLTQVAIMQK----- 682
Query: 898 AADRGAFIDQSQSLNIYMAEINYAK----MSSMH---FHGWKLGLKTGMYYLRTKPAANA 950
F+DQ+ S N NY MS M + + G KT +YY T+
Sbjct: 683 ------FVDQAISANTSYDPENYPNGKVPMSVMLDDLLYFYYYGGKT-LYYHNTRDGKGT 735
Query: 951 IQFTIDKTK 959
+ I+ K
Sbjct: 736 EDYEIETPK 744
Score = 56.7 bits (137), Expect = 6e-08
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA Y WH ++ D L LK N G EE R R L YG+ I D R + +L
Sbjct: 296 RGGAATAYYPIWHLEVEDLLVLKNNKGVEENRIRHLDYGVQINDLMYERFIKNDYITLFS 355
Query: 61 PNACRG-LSDSWG---EKFDDLYKKYEAE 85
P+ G L D++ ++F +LY+ E +
Sbjct: 356 PHDVGGELYDAYFADQDRFRELYEALEKD 384
Score = 31.6 bits (72), Expect = 2.3
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GV A + ++ + L+++ +FE + Y ++AS ++A G + + + S
Sbjct: 509 VGVTNYAHYLAKNFASYEDANADLVHE-LFERLQYYLIKASNKLAKEKGACEYFSDTKYS 567
Query: 653 QGILQYDMWG------VTPTDLWDWAALKVLALVYGLK 684
+G L D + V P DW +L+ YG++
Sbjct: 568 RGELPIDWYKKKVDELVAPKYNCDWESLREDLKKYGIR 605
>gnl|CDD|188230 TIGR02510, NrdE-prime, ribonucleoside-diphosphate reductase, alpha
chain. This model represents a small clade of
ribonucleoside-diphosphate reductase, alpha chains which
are sufficiently divergent from the usual Class I RNR
alpha chains (NrdE or NrdA, TIGR02506) as to warrant
their own model. The genes from Thermus thermophilus,
Dichelobacter and Salinibacter are adjacent to the usual
RNR beta chain [Purines, pyrimidines, nucleosides, and
nucleotides, 2'-Deoxyribonucleotide metabolism].
Length = 548
Score = 165 bits (419), Expect = 4e-43
Identities = 118/395 (29%), Positives = 183/395 (46%), Gaps = 51/395 (12%)
Query: 161 WG-EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQ--QN 217
WG E DD Y+K A R W ++ S+ TG PYM ++ N + Q +N
Sbjct: 183 WGVEVGDDWYEKMIA-----GDPEKRARWAKLMYSRARTGIPYMWFRWNANELAPQVIKN 237
Query: 218 LG-TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMY--INPADKTYNFTKLKDVAKIVTK 274
G I+ SNLCTEI + E VC L+S+ + Y D + D + ++
Sbjct: 238 SGIPIRASNLCTEIALPSDDMESFVCCLSSLNVLHYDEWKDTDAVETLVRFLD--SVCSE 295
Query: 275 NLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETI 334
+ K +++ + A R R IG+G G R+PF+ E+ +LN +I++TI
Sbjct: 296 FIAKAKGLSY--MHRAVRFAERARAIGLGTLGWHSYLQSNRIPFESGEAHILNAEIYKTI 353
Query: 335 YYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRN 394
A EAS E+A R G + EG+ G RN
Sbjct: 354 KERAEEASRELAERYGEPEVCEGT--------------------------------GRRN 381
Query: 395 SLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDN 453
+ LIA PT S+A ILG + S EP SN + + G+ N L + L E G +
Sbjct: 382 ATLIAIAPTKSSAFILGQVSPSIEPLVSNYFIQDSNKGDVVRKNPVLAKVLKEKGTDQEL 441
Query: 454 MKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-- 511
+ D + +NGS+Q ++ + + K ++KT +EI Q ++ +AA R IDQ+QSLN+++
Sbjct: 442 VWDIITYHNGSVQHLDFLTDEEKSVFKTFYEISQMAIIRLAAARQKHIDQAQSLNLFISP 501
Query: 512 AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 546
E + + W GLK+ +YY R++ A A
Sbjct: 502 DEKPSVDANVLRAFAWDPGLKS-LYYQRSERGAQA 535
Score = 99.6 bits (248), Expect = 1e-21
Identities = 55/159 (34%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Query: 795 GVRNSLLIAPMPTASTAQILGN-NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGL 853
G RN+ LIA PT S+A ILG + S EP SN + + G+ N L + L E G
Sbjct: 378 GRRNATLIAIAPTKSSAFILGQVSPSIEPLVSNYFIQDSNKGDVVRKNPVLAKVLKEKGT 437
Query: 854 WDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNI 913
+ + D + +NGS+Q ++ + + K ++KT +EI Q ++ +AA R IDQ+QSLN+
Sbjct: 438 DQELVWDIITYHNGSVQHLDFLTDEEKSVFKTFYEISQMAIIRLAAARQKHIDQAQSLNL 497
Query: 914 YM--AEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANA 950
++ E + + W GLK+ +YY R++ A A
Sbjct: 498 FISPDEKPSVDANVLRAFAWDPGLKS-LYYQRSERGAQA 535
Score = 35.3 bits (81), Expect = 0.16
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEG 648
+G G R+PF+ E+ +LN +I++TI A EAS E+A R G + EG
Sbjct: 321 LGTLGWHSYLQSNRIPFESGEAHILNAEIYKTIKERAEEASRELAERYGEPEVCEG 376
Score = 33.0 bits (75), Expect = 1.0
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 8/71 (11%)
Query: 643 YQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYML 702
Q E Q+ WGV D W + + W ++ S+ TG PYM
Sbjct: 171 IQL-ENPAS-----QHVGWGVEVGDDW-YEKMIAGDPEK-RARWAKLMYSRARTGIPYMW 222
Query: 703 YKDACNRKSNQ 713
++ N + Q
Sbjct: 223 FRWNANELAPQ 233
>gnl|CDD|181649 PRK09103, PRK09103, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 758
Score = 153 bits (389), Expect = 3e-38
Identities = 142/509 (27%), Positives = 224/509 (44%), Gaps = 87/509 (17%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G EE R R + YG+ I +R+ +L
Sbjct: 295 RGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFS 354
Query: 151 PNTCRGLSDSW---GEKFDDLYKKYEAEGKFIR--QVPARKLWFAILDSQIETGTPYMLY 205
P+ GL D++ ++F+ LY KYE + IR +V A +L+ ++ + TG Y+
Sbjct: 355 PSDVPGLYDAFFADQDEFERLYTKYEQD-DSIRKKRVKAVELFSLMMQERASTGRIYIQN 413
Query: 206 KDACNRKSN-QQNLGTIKCSNLCTEIVEYT--------SKDEVAVCNLASIALNMYINPA 256
D CN S + ++ SNLC EI T E+A+C L+ A N+
Sbjct: 414 VDHCNTHSPFDPKVAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLS--AFNL----- 466
Query: 257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRL 316
+ +L+++A + + L+ ++D YP+ A+ M R +GIGV A + +
Sbjct: 467 GAINSLDELEELADLAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKNGV 526
Query: 317 PFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----G 371
+ + L + FE I Y L+AS E+A G + + +QGIL D +
Sbjct: 527 RYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDA 586
Query: 372 VTPTDL-WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRR 427
+ L +DW L+E+I HG+RNS L A MP+ +++QI EP Y S S+
Sbjct: 587 ICNEPLHYDWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKD 646
Query: 428 -VLSGEFQVV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 485
+L QVV ++ L+D EL LW+ M + N+G +Q + GI QK
Sbjct: 647 GILK---QVVPDYERLKDAYEL-LWE--MPN----NDGYLQ-LVGIMQK----------- 684
Query: 486 PQKTVLDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHF-----HGWKLGLKT 533
F+DQS S N NY K+ +K G+KT
Sbjct: 685 --------------FVDQSISAN-----TNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT 725
Query: 534 GMYYLRTKPAANAIQFTIDKTKMANAMAS 562
+YY T+ A Q + + +
Sbjct: 726 -LYYHNTRDGAEDAQDDLQPSIQDDGCEG 753
Score = 56.5 bits (137), Expect = 6e-08
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 59/201 (29%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP---YTSNIYSRR-VLSGEFQ 838
DW L+E+I HG+RNS L A MP+ +++QI EP Y S S+ +L Q
Sbjct: 595 DWETLREEIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILK---Q 651
Query: 839 VV-NHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDM 897
VV ++ L+D EL LW+ M + N+G +Q + GI QK
Sbjct: 652 VVPDYERLKDAYEL-LWE--MPN----NDGYLQ-LVGIMQK------------------- 684
Query: 898 AADRGAFIDQSQSLNIYMAEINY-------AKMSSMHF-----HGWKLGLKTGMYYLRTK 945
F+DQS S N NY K+ +K G+KT +YY T+
Sbjct: 685 ------FVDQSISAN-----TNYDPSRFPSGKVPMKQLLKDLLTAYKFGVKT-LYYHNTR 732
Query: 946 PAANAIQFTIDKTKMANAMAS 966
A Q + + +
Sbjct: 733 DGAEDAQDDLQPSIQDDGCEG 753
Score = 50.8 bits (122), Expect = 4e-06
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G EE R R + YG+ I +R+ +L
Sbjct: 295 RGGAATLFYPIWHLEVESLLVLKNNRGVEENRVRHMDYGVQINKLMYQRLIKGGDITLFS 354
Query: 61 PNACRGLSDSW---GEKFDDLYKKYEAE 85
P+ GL D++ ++F+ LY KYE +
Sbjct: 355 PSDVPGLYDAFFADQDEFERLYTKYEQD 382
Score = 32.7 bits (75), Expect = 1.3
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 617 LNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW-----GVTPTDL-WD 670
L + FE I Y L+AS E+A G + + +QGIL D + + L +D
Sbjct: 536 LTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAQGILPIDTYKKDLDAICNEPLHYD 595
Query: 671 WAALKVLALVYGLK 684
W L+ +GL+
Sbjct: 596 WETLREEIKTHGLR 609
>gnl|CDD|235796 PRK06406, PRK06406, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 771
Score = 148 bits (374), Expect = 2e-36
Identities = 110/425 (25%), Positives = 197/425 (46%), Gaps = 65/425 (15%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA L H DI +F+ K + K + + + DEF ++++D + L
Sbjct: 325 RRGANMGILSYHHPDIMEFITSKDSENKV---LSNFNISVAVTDEFFDKLDNDDYYPLRN 381
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P GK ++++ AR++W I+ +TG P +++ D N
Sbjct: 382 PRN----------------------GKEVKRIKARQVWDLIITQAWKTGDPGVIFLDEIN 419
Query: 211 RKSNQQNLGTIKCSNLCTE--IVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
RK+ +NLG I+ +N C E ++ Y S CNL SI L+ ++ + ++ +L++
Sbjct: 420 RKNPVKNLGEIESTNPCGEQPLLPYES------CNLGSINLSKFV--ENGKIDWDRLRET 471
Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
I T+ L+ +ID N +PV + + R IG+GV G AD+ I++ +P++ E+ + +
Sbjct: 472 VHIATRFLDNVIDANKFPVPQIKEMTRMTRKIGLGVMGFADMLIKLGIPYNSEEALEIAE 531
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
++ + I + AS ++A G + + GS +W K+ I
Sbjct: 532 KVMKFINEESHRASQKLAEERGVFPAWYGS--------------------EWE--KKGIK 569
Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVEL 447
+RNS PT + + I G + S EP + + R VL+G E VN +
Sbjct: 570 ---MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKR 626
Query: 448 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQS 506
GL+ + + + + G++Q+I+ +P+ +K ++ T EI PQ VL M A + D S
Sbjct: 627 GLYSEELMRK-VAETGNLQNID-VPEDIKRIFVTAHEIDPQWHVL-MQATFQRYCDSGVS 683
Query: 507 LNIYM 511
I +
Sbjct: 684 KTINL 688
Score = 50.2 bits (120), Expect = 5e-06
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 796 VRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG-EFQVVNHHLLRDLVELGLW 854
+RNS PT + + I G + S EP + + R VL+G E VN + GL+
Sbjct: 570 MRNSTTTTIAPTGTISIIAGCSSSIEPLFAIAFVRHVLNGQELLEVNPLFEEITRKRGLY 629
Query: 855 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI-PQKTVLDMAADRGAFIDQSQSLNI 913
+ + + + G++Q+I+ +P+ +K ++ T EI PQ VL M A + D S I
Sbjct: 630 SEELMRK-VAETGNLQNID-VPEDIKRIFVTAHEIDPQWHVL-MQATFQRYCDSGVSKTI 686
Query: 914 YM 915
+
Sbjct: 687 NL 688
Score = 34.8 bits (80), Expect = 0.30
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
+GV G AD+ I++ +P++ E+ + +++ + I + AS ++A G + + GS
Sbjct: 505 LGVMGFADMLIKLGIPYNSEEALEIAEKVMKFINEESHRASQKLAEERGVFPAWYGS 561
Score = 30.6 bits (69), Expect = 5.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 675 KVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
K + + ++W I+ +TG P +++ D NRK+ +NL IE
Sbjct: 386 KEVKRIKARQVWDLIITQAWKTGDPGVIFLDEINRKNPVKNLGEIE 431
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 752
Score = 143 bits (364), Expect = 3e-35
Identities = 111/390 (28%), Positives = 185/390 (47%), Gaps = 70/390 (17%)
Query: 103 HGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWG 162
H DI +F+ K++ G E ++ I + FM VE+D ++ L+ P T
Sbjct: 182 HPDIMEFITCKEDNG--ELTNFNISVA--ITEAFMEAVEADEEYDLINPRT--------- 228
Query: 163 EKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLGTIK 222
G+ + ++ AR+++ I++ E G P +++ D NR + +LG I+
Sbjct: 229 -------------GEVVGRLNAREVFDLIVEMAWENGEPGIVFIDRINRDNPTPHLGEIE 275
Query: 223 CSNLCTE--IVEYTSKDEVAVCNLASIAL-NMYINPADKTYNFTKLKDVAKIVTKNLNKI 279
+N C E ++ Y S CNL SI L M N ++ KL++V + + L+ +
Sbjct: 276 STNPCGEQPLLPYES------CNLGSINLSKMVKN---GDVDWEKLREVVHLAVRFLDNV 326
Query: 280 IDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 339
ID N YP+ + +R IG+GV G AD+ IQ+ +P+D E+ L +++ + I A
Sbjct: 327 IDANKYPLPQIEEMTKGNRKIGLGVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAH 386
Query: 340 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLL-- 397
AS E+A GP+ YEGS YD G+ P +RN+ +
Sbjct: 387 AASRELAEERGPFPNYEGS-------IYDKDGLGP-----------------MRNATVTT 422
Query: 398 IAPMPTASTAQILGNNES-FEPYTSNIYSRRVLSGEFQV-VNHHLLRDLVELGLWDDNMK 455
IAP T S I+ S EP + ++R V+ GE V VN E G + + +
Sbjct: 423 IAPTGTIS---IIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEEGFYSEELM 479
Query: 456 DQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 485
++ I GSIQDI+ +P+ ++ ++ T +I
Sbjct: 480 EK-IAEKGSIQDIDEVPEDVRRVFVTAHDI 508
Score = 44.2 bits (105), Expect = 4e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 594 GVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
GV G AD+ IQ+ +P+D E+ L +++ + I A AS E+A GP+ YEGS
Sbjct: 350 GVMGWADMLIQLGIPYDSEEAVELAEKVMKFIQDEAHAASRELAEERGPFPNYEGS 405
Score = 41.1 bits (97), Expect = 0.003
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 796 VRNSLL--IAPMPTASTAQILGNNES-FEPYTSNIYSRRVLSGEFQV-VNHHLLRDLVEL 851
+RN+ + IAP T S I+ S EP + ++R V+ GE V VN E
Sbjct: 415 MRNATVTTIAPTGTIS---IIAGCSSGIEPLFALSFTRNVMDGERLVEVNPVFEAAAKEE 471
Query: 852 GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
G + + + ++ I GSIQDI+ +P+ ++ ++ T +I
Sbjct: 472 GFYSEELMEK-IAEKGSIQDIDEVPEDVRRVFVTAHDI 508
Score = 33.4 bits (77), Expect = 0.68
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 13 HGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCP 61
H DI +F+ K++ G E ++ I + FM VE+D ++ L+ P
Sbjct: 182 HPDIMEFITCKEDNG--ELTNFNISVA--ITEAFMEAVEADEEYDLINP 226
>gnl|CDD|236069 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 136 bits (343), Expect = 7e-33
Identities = 117/489 (23%), Positives = 206/489 (42%), Gaps = 81/489 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGA A+YL +H D+ +FL+ KK E+ R + GL +P +F + + +
Sbjct: 242 RPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFA 301
Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYML 204
P+T + +G DD+ Y A ++ AR++ I +Q+++G PY++
Sbjct: 302 PHT---VYKEYGVTLDDIDLEEMYDDLVANPNVKKKKKNAREMLNKIAQTQLQSGYPYLM 358
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE---------YTSKDEVAV---CNLASI-ALNM 251
+KD N+ N+G IK SNLCTEI + Y +DE+ CNL S+ +N+
Sbjct: 359 FKDNANKVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNV 418
Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADL 310
+ K +D L + DV N R +N +G+GV L
Sbjct: 419 MES--------KKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGY 470
Query: 311 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQG--ILQY 367
+ ++ ++ E++ F + + ++E S EIA G YQ +E S + G +Y
Sbjct: 471 LAKNKIGYESEEAKDFANTFFMMMNFYSIERSMEIAKERGETYQDFEKSDYANGKYFEKY 530
Query: 368 DMWGVTP-----TDLW---------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNN 413
P +L+ DW L++ + ++G+ ++ +A PT S + +
Sbjct: 531 TTQDFEPKFEKVRELFEGMHIPTKEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNAT 590
Query: 414 ESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQ 473
S P I R + E + + L +W
Sbjct: 591 SSVMPIVDQIERRTYGNAE----TFYPMPFLSPQTMW----------------------- 623
Query: 474 KLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLK 532
YK+ + Q ++D+ A IDQ S +Y+ +EI+ +++ ++ + GLK
Sbjct: 624 ----YYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHHKGLK 679
Query: 533 TGMYYLRTK 541
+ +YY R K
Sbjct: 680 S-LYYTRNK 687
Score = 49.0 bits (117), Expect = 1e-05
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGA A+YL +H D+ +FL+ KK E+ R + GL +P +F + + +
Sbjct: 242 RPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFELAKEGKDFYMFA 301
Query: 61 PNACRGLSDSWGEKFDDL 78
P+ + +G DD+
Sbjct: 302 PHT---VYKEYGVTLDDI 316
Score = 41.7 bits (98), Expect = 0.002
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 33/164 (20%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DW L++ + ++G+ ++ +A PT S + + S P I R + E
Sbjct: 556 DWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAE----TF 611
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
+ + L +W YK+ + Q ++D+ A
Sbjct: 612 YPMPFLSPQTMW---------------------------YYKSAFNTDQMKLIDLIATIQ 644
Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
IDQ S +Y+ +EI+ +++ ++ + GLK+ +YY R K
Sbjct: 645 THIDQGISTILYVNSEISTRELARLYVYAHHKGLKS-LYYTRNK 687
>gnl|CDD|211905 TIGR04170, RNR_1b_NrdE, ribonucleoside-diphosphate reductase, class
1b, alpha subunit. Members of this family are NrdE, the
alpha subunit of class 1b ribonucleotide reductase. This
form uses a dimanganese moiety associated with a
tyrosine radical to reduce the cellular requirement for
iron.
Length = 698
Score = 136 bits (343), Expect = 8e-33
Identities = 119/490 (24%), Positives = 201/490 (41%), Gaps = 84/490 (17%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL +H DI FL+ KK E+ R + L G+ IPD+F + + L
Sbjct: 237 RQGAGAVYLNAFHPDILRFLDTKKENADEKIRIKTLSLGVVIPDKFFELAKENKDMYLFS 296
Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFIRQ--VPARKLWFAILDSQIETGTPYM 203
P + +G FDD+ Y + A + IR+ + AR + + + Q E+G PY+
Sbjct: 297 PYD---VEREYGVPFDDIDITEKYDEMVANPR-IRKKKINARDFFQTLAEIQFESGYPYI 352
Query: 204 LYKDACNRKSNQQNLGTIKCSNLCTEIV---------EYTSKDEVAV---CNLASI-ALN 250
+++D NR +G IK SNLC+EI+ +Y DE+ CNL S+ N
Sbjct: 353 MFEDTVNRA--NPIIGRIKMSNLCSEILQVSEASLYNDYLEYDEIGHDISCNLGSLNIAN 410
Query: 251 MYINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLAD 309
+ +P + + L + D+ + V R N IG+G L
Sbjct: 411 VMDSP--------DFGRTVETAIRALTAVSDMSHIRNVPSIRKGNAASHAIGLGQMNLHG 462
Query: 310 LFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG-PYQTYEGSPVSQGIL--Q 366
+ + + E+ F T+ Y +L S EIA G + +E S + G +
Sbjct: 463 YLAREGIAYGSPEALDFTNIYFMTVNYYSLRRSMEIARERGETFAGFEQSDYASGEYFDK 522
Query: 367 YDMWGVTPT-----DLW---------DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
Y P +L+ DWA LK+ + ++G+ + +A PT S + I +
Sbjct: 523 YVSQEFAPKTEKVRELFEGIHIPTREDWAELKDDVMEYGLYHQNRLAVAPTGSISYINHS 582
Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
S P S I R+ G+ V + L ++N+
Sbjct: 583 TSSIHPIVSKIEIRK--EGKIGRVYYPA------PFLTNENL------------------ 616
Query: 473 QKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGL 531
+ Y+ ++I + ++D A +DQ SL ++ ++ + W G+
Sbjct: 617 ----EYYQDAYDIDMEKIIDTYATATQHVDQGLSLTLFFKDTATTRDLNRAQIYAWHKGI 672
Query: 532 KTGMYYLRTK 541
KT +YY+R +
Sbjct: 673 KT-LYYIRLR 681
Score = 51.3 bits (123), Expect = 2e-06
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 32/164 (19%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 842
DWA LK+ + ++G+ + +A PT S + I + S P S I R+ G+ V +
Sbjct: 549 DWAELKDDVMEYGLYHQNRLAVAPTGSISYINHSTSSIHPIVSKIEIRK--EGKIGRVYY 606
Query: 843 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRG 902
L ++N+ + Y+ ++I + ++D A
Sbjct: 607 PAP------FLTNENL----------------------EYYQDAYDIDMEKIIDTYATAT 638
Query: 903 AFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
+DQ SL ++ ++ + W G+KT +YY+R +
Sbjct: 639 QHVDQGLSLTLFFKDTATTRDLNRAQIYAWHKGIKT-LYYIRLR 681
Score = 50.1 bits (120), Expect = 6e-06
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL +H DI FL+ KK E+ R + L G+ IPD+F + + L
Sbjct: 237 RQGAGAVYLNAFHPDILRFLDTKKENADEKIRIKTLSLGVVIPDKFFELAKENKDMYLFS 296
Query: 61 PNACRGLSDSWGEKFDDL 78
P + +G FDD+
Sbjct: 297 PYD---VEREYGVPFDDI 311
>gnl|CDD|180772 PRK06948, PRK06948, ribonucleotide reductase-like protein;
Provisional.
Length = 595
Score = 130 bits (328), Expect = 3e-31
Identities = 114/465 (24%), Positives = 186/465 (40%), Gaps = 75/465 (16%)
Query: 103 HGDIFDFLELKKNTGKEEFRARDLFYGL--WIPDEFMRRVESDAQWSLMCPNTCRGLSDS 160
H D+ F+ K+ RAR + L + D FM+ V D W+L R +
Sbjct: 179 HPDLLAFVAAKRG------RARWTTFNLSVAVTDAFMQAVAQDLPWALRHRAPPRRAAGG 232
Query: 161 WGEKFDDLYKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG 219
D G + VPAR LW I+ + ++ P +L+ D + + +
Sbjct: 233 ALRGAD---------GAWTYATVPARHLWREIVSAARDSAEPGLLFVDTIDAANPLREHE 283
Query: 220 TIKCSNLCTE--IVEYTSKDEVAVCNLASIALNMYI-NP----ADKTYNFTKLKDVAKIV 272
I +N C E + Y S C L I L+ ++ +P + ++F L +I
Sbjct: 284 RIDATNPCGEQPLPPYGS------CVLGPIDLSRFVRHPFGVGGEPRFDFAALATAVRIQ 337
Query: 273 TKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFE 332
+ L+ +D+ +P+ + R IG+GV GLAD MRL +D +R + + I
Sbjct: 338 VRMLDNALDLTRWPLAAHAREARQKRRIGVGVTGLADALTMMRLRYDSPAAREMARYIAS 397
Query: 333 TIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGV 392
+ + A AS +AA G Y + + L+ P A+ IA+HG+
Sbjct: 398 DLRHHAYAASAALAAERGAYPLCDPAAHLDA-LRA----GPPLPH----AVCHAIARHGL 448
Query: 393 RNSLLIAPMPTASTAQILGNNES--FEPYTSNIYSRRVLSGE-----FQVVNH--HLLRD 443
RNS L++ P S + G+N S EP + I R V +G + NH L R
Sbjct: 449 RNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARGMRAENHAYRLFRS 508
Query: 444 LVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQ 503
L G L D + T ++ L M A ++D
Sbjct: 509 L------------------------RGERAALPDYFVTAADVAPADHLAMRAALQPYVDA 544
Query: 504 SQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 547
S + + + A++ ++ F W+ GLK G+ R PA +A+
Sbjct: 545 GISKTVTLPNHYSLAEVDALLFQAWRAGLK-GITIFRPDPALDAV 588
Score = 52.1 bits (125), Expect = 1e-06
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 35/176 (19%)
Query: 786 ALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES--FEPYTSNIYSRRVLSGE-----FQ 838
A+ IA+HG+RNS L++ P S + G+N S EP + I R V +G +
Sbjct: 438 AVCHAIARHGLRNSHLLSFAPVGSVSLAFGDNCSPGIEPARAWIEHRPVRAGAGGARGMR 497
Query: 839 VVNH--HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 896
NH L R L G L D + T ++ L
Sbjct: 498 AENHAYRLFRSL------------------------RGERAALPDYFVTAADVAPADHLA 533
Query: 897 MAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAI 951
M A ++D S + + + A++ ++ F W+ GLK G+ R PA +A+
Sbjct: 534 MRAALQPYVDAGISKTVTLPNHYSLAEVDALLFQAWRAGLK-GITIFRPDPALDAV 588
Score = 48.3 bits (115), Expect = 2e-05
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 647
+GV GLAD MRL +D +R + + I + + A AS +AA G Y +
Sbjct: 367 VGVTGLADALTMMRLRYDSPAAREMARYIASDLRHHAYAASAALAAERGAYPLCD 421
>gnl|CDD|181392 PRK08332, PRK08332, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1740
Score = 122 bits (306), Expect = 6e-28
Identities = 73/253 (28%), Positives = 132/253 (52%), Gaps = 7/253 (2%)
Query: 238 EVAVCNLASIALNMYINPADKT---YNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSN 294
E CNLASI L ++ + +++ + V + V K L+ IDVN +P+ E +
Sbjct: 1304 EYESCNLASINLAKFVKYDENGKPYFDWDEYAYVIQKVAKYLDNAIDVNKFPLPEIDYNT 1363
Query: 295 MRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQT 354
R IG+G+ GLAD ++ +P++ E +++ E + + A + S E A + G +
Sbjct: 1364 KLTRRIGVGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPL 1423
Query: 355 YEGSPVSQGILQYDMWGVTPTDLWD--WAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
YE + +G L + G ++W+ W L E+I K+GVRN+++ PT S + I
Sbjct: 1424 YEKTEYPKGELPVE--GFYHPEIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADT 1481
Query: 413 NESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIP 472
+ EP + +Y + V GEF V+ +L + GL+ + + ++ N GS+Q +E IP
Sbjct: 1482 SSGIEPIFALVYKKSVTVGEFYYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIP 1541
Query: 473 QKLKDLYKTVWEI 485
+ ++ ++ T +I
Sbjct: 1542 EDMQRVFVTALDI 1554
Score = 67.9 bits (165), Expect = 2e-11
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 780 DLWD--WAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEF 837
++W+ W L E+I K+GVRN+++ PT S + I + EP + +Y + V GEF
Sbjct: 1443 EIWNLPWDKLVEEIKKYGVRNAMVTTCPPTGSVSMIADTSSGIEPIFALVYKKSVTVGEF 1502
Query: 838 QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
V+ +L + GL+ + + ++ N GS+Q +E IP+ ++ ++ T +I
Sbjct: 1503 YYVDPVFEAELKKRGLYSEELLKKISDNYGSVQGLEEIPEDMQRVFVTALDI 1554
Score = 37.1 bits (85), Expect = 0.054
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+G+ GLAD ++ +P++ E +++ E + + A + S E A + G + YE +
Sbjct: 1371 VGMMGLADALFKLGIPYNSEEGFKFMRKVTEYLTFYAYKYSVEAAKKRGTFPLYEKTEYP 1430
Query: 653 QGILQYDMWGVTPTDLWD--WAALKVLALVYGLK 684
+G L + G ++W+ W L YG++
Sbjct: 1431 KGELPVE--GFYHPEIWNLPWDKLVEEIKKYGVR 1462
Score = 32.8 bits (74), Expect = 1.3
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 27/140 (19%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 149
R GA LE WH DI F+ K KN G ++ G+W ++F ++ ++ L+
Sbjct: 800 RRGANMGILEIWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLI 857
Query: 150 CPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDAC 209
P T G+ ++++ + L+ + P +++ D
Sbjct: 858 NPRT----------------------GEVVKEIDPKSLFEELAYMAWAKADPGVIFFDVI 895
Query: 210 NRKS--NQQNLGTIKCSNLC 227
NR++ + G I+ +N C
Sbjct: 896 NRRNVLKEAKGGPIRATNPC 915
Score = 30.9 bits (69), Expect = 5.1
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELK-KNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLM 59
R GA LE WH DI F+ K KN G ++ G+W ++F ++ ++ L+
Sbjct: 800 RRGANMGILEIWHPDIEKFIHAKEKNIGTNVLSNFNISVGIW--EDFWEALKEGKKYPLI 857
Query: 60 CPNACRGLSDSWGEKFDDLYKKYEAEGLVY 89
P GE ++ K E L Y
Sbjct: 858 NPRT--------GEVVKEIDPKSLFEELAY 879
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 118 bits (298), Expect = 3e-27
Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 33/328 (10%)
Query: 135 EFMRRVESDAQWSLMCPNT-------CRGLSDSWGEKFDDLYKKYEAEG---KFIRQVPA 184
EFM VE+D ++ L P+ ++ W E D +++E G + R++ A
Sbjct: 378 EFMEAVENDEEYELRFPDVENYTEEEMEIYNEEWHEVGD--VREWEKMGYPVRTYRKIKA 435
Query: 185 RKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLG-TIKCSNLCTE--IVEYTSKDEVAV 241
++LW I + P + + D N +N + G + +N C E + Y+ V
Sbjct: 436 KELWNLINICATYSAEPGIFFIDNANEMTNAKAYGQKVVATNPCGEQPLAPYS------V 489
Query: 242 CNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIG 301
CNLA+I L + KT ++ KLK ++ + + +ID Y +EE + + R +G
Sbjct: 490 CNLAAINLANMADKETKTVDYEKLKRTVEVGVRMQDNVIDATPYFLEENKKQALGERRVG 549
Query: 302 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSP-- 359
+GV GL DL I + E L QIFETI A S E+A G + G
Sbjct: 550 LGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQTEE 609
Query: 360 ----VSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNES 415
+ + + P D ++E I K+G+RNS L+ PT ST ++G +
Sbjct: 610 ETAKLREAFINTGYMKKMPED------IREDILKYGIRNSHLLTVAPTGSTGTMVGVSTG 663
Query: 416 FEPYTSNIYSRRVLSGEFQVVNHHLLRD 443
EPY S Y R G+F V ++++
Sbjct: 664 LEPYFSFSYYRSGRLGKFIEVKADIVQE 691
Score = 41.0 bits (96), Expect = 0.004
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 787 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLR 846
++E I K+G+RNS L+ PT ST ++G + EPY S Y R G+F V +++
Sbjct: 631 IREDILKYGIRNSHLLTVAPTGSTGTMVGVSTGLEPYFSFSYYRSGRLGKFIEVKADIVQ 690
Query: 847 D 847
+
Sbjct: 691 E 691
Score = 40.2 bits (94), Expect = 0.006
Identities = 21/57 (36%), Positives = 25/57 (43%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGS 649
+GV GL DL I + E L QIFETI A S E+A G + G
Sbjct: 550 LGVMGLHDLLIYCETVYGSEEGNQLVDQIFETIATTAYRTSIELAKEKGSFPFLVGQ 606
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 109 bits (273), Expect = 3e-24
Identities = 95/376 (25%), Positives = 155/376 (41%), Gaps = 47/376 (12%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL H D+ FL+ K+ E+ R + L GL IPD + + +L
Sbjct: 243 RQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMALFS 302
Query: 151 PNTC-----RGLSD-SWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
P + +SD S E++ +L + +I ARKL+ I + E+G PY+L
Sbjct: 303 PYDIKREYGKPMSDISITEEYYNLLANPAIKKTYIS---ARKLFQTIAELHFESGYPYLL 359
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVE------------YTSKDEVAVCNLASIALNMY 252
+ D N+++ G I SNLC+EI + + E CNL S+ +
Sbjct: 360 FDDTVNKRNPHAKKGRIVMSNLCSEIAQVSTPSTFNEDLSFKKIGEDICCNLGSLNIAKA 419
Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFI 312
+ + F +L + ++++ D++ P E N + +G+G L
Sbjct: 420 MESGPE---FEQLIYTSIRALDRVSRVSDLSCAPSIE--KGNAANHAVGLGAMNLHGFLA 474
Query: 313 QMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQG-------IL 365
+ +D E+ F T+ Y A +AS ++A G + +E S + G
Sbjct: 475 TNHIYYDSKEAVDFTDLFFYTMAYYAFKASNQLAKEKGAFAGFELSKYADGSYFDKYTKE 534
Query: 366 QYDMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILG 411
W GVT DW L E I K G+ NS L+A PT S + +
Sbjct: 535 DAKKWTPKTAKVKELLQKYGVTIPTQADWQELVEDIKKTGLANSHLLAVAPTGSISYLSS 594
Query: 412 NNESFEPYTSNIYSRR 427
S +P + + R+
Sbjct: 595 CTPSLQPVVAPVEVRK 610
Score = 40.9 bits (96), Expect = 0.004
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPD 44
R GA A+YL H D+ FL+ K+ E+ R + L GL IPD
Sbjct: 243 RQGAGAVYLHAHHPDVLTFLDTKRENADEKIRIKSLSLGLVIPD 286
Score = 33.9 bits (78), Expect = 0.51
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRR 831
DW L E I K G+ NS L+A PT S + + S +P + + R+
Sbjct: 562 DWQELVEDIKKTGLANSHLLAVAPTGSISYLSSCTPSLQPVVAPVEVRK 610
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 102 bits (256), Expect = 5e-22
Identities = 124/496 (25%), Positives = 197/496 (39%), Gaps = 106/496 (21%)
Query: 99 LEPWHGDIFDFLELKKNTGKEEFRARDL-----------------FY-----GLWIPDEF 136
L+ H DI +F+E K KEE + R L Y + + DEF
Sbjct: 233 LDVDHPDIEEFIETK---AKEEDKIRALRDAGYDMDLGGEAYSSVQYQNANNSVRVSDEF 289
Query: 137 MRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQI 196
MR VE+D ++ L R +D G+ I V A++L+ I ++
Sbjct: 290 MRAVENDGEFGL------RARTD----------------GEVIETVDAKELFRKIAEAAW 327
Query: 197 ETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPA 256
E P + Y D N G I SN C+E Y D + CNLAS+ L ++
Sbjct: 328 ECADPGIQYDDTINDWHTCPESGRINASNPCSE---YMFLDNSS-CNLASLNLMKFLRD- 382
Query: 257 DKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEE-ARNSNMRHRPIGIGVQGLADLFIQMR 315
D T++ + ++V + I +P E+ ARN+ R +G+G L L +
Sbjct: 383 DGTFDVESFRHAVELVITAMEISICFADFPTEKIARNTRA-FRQLGLGYANLGALLMATG 441
Query: 316 LPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE-GSPVSQGILQ-------- 366
LP+D + R L I + A S E+A GP++ Y + +++
Sbjct: 442 LPYDSDGGRALAAAITSLMTGEAYRRSAELAGVVGPFEGYARNAEPHLRVMRKHAAANDA 501
Query: 367 YDMWGVTPTDLWD-----WAALKEKIAKHGVRNS--LLIAP-------MPTASTAQILGN 412
G L + W E K+G RN+ ++AP M +T
Sbjct: 502 IRPLGEVDAALLEAAKEAWDDALELGEKNGYRNAQASVLAPTGTIGFMMDCDTT------ 555
Query: 413 NESFEPYTSNI-YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD--QLIVNNGSIQDIE 469
EP + + Y + V G ++VN + R L +LG ++ ++ + I +G IE
Sbjct: 556 --GIEPDFALVKYKKLVGGGSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGH---IE 610
Query: 470 GIPQKLKDLYKTVWEIPQKT------------VLDMAADRGAFIDQSQSLNIYMAE-INY 516
G P LK + V++ K V MAA + F+ + S + M E
Sbjct: 611 GAPG-LKPEHYAVFDCAMKPASGERSISPMGHVRMMAAVQ-PFLSGAISKTVNMPEDATV 668
Query: 517 AKMSSMHFHGWKLGLK 532
+ ++ GWKLGLK
Sbjct: 669 EDIEEVYLEGWKLGLK 684
>gnl|CDD|180921 PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 720
Score = 95.9 bits (239), Expect = 4e-20
Identities = 102/376 (27%), Positives = 151/376 (40%), Gaps = 56/376 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA +YL +H DI FL KK E+ R + L G+ +PD+F + L
Sbjct: 245 RQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYLFS 304
Query: 151 PNTCRGLSDSWGEKFD--DLYKKYE---AEGKFIRQ-VPARKLWFAILDSQIETGTPYML 204
P + +G F+ D+ K+Y+ A + + AR L I Q E+G PY++
Sbjct: 305 P---YSVEKEYGVPFNYVDITKEYDELVANPNIRKTKIKARDLETEISKLQQESGYPYII 361
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIV------------EYTSKDEVAVCNLASI-ALNM 251
D NR +N + G I SNLC+EI+ EY CNL S +NM
Sbjct: 362 NIDTANR-ANPID-GKIIMSNLCSEILQVQTPSLINDAQEYVKMGTDISCNLGSTNIVNM 419
Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADL 310
+P +F + + + L + D N V ++ N + IG+G GL
Sbjct: 420 MTSP-----DFGRSIETM---VRALTFVTDSSNIDAVPSIKHGNSQAHTIGLGAMGLHSY 471
Query: 311 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR--------------DGP----Y 352
Q + + ES F + Y L AS IA DG Y
Sbjct: 472 LAQNHIEYGSPESLEFTSIYFMLLNYWTLVASNNIARERGETFHNFEKSKYADGSYFDKY 531
Query: 353 QTYEGSPVSQGI--LQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQIL 410
T + P S + L ++ T DWAAL++ + K G+ + +A P S + I
Sbjct: 532 VTGDFVPKSDKVKELFKGIFIPTAA---DWAALRDAVMKDGLYHQNRLAVAPNGSISYIN 588
Query: 411 GNNESFEPYTSNIYSR 426
+ S P T I R
Sbjct: 589 DTSASIHPITQRIEER 604
Score = 47.4 bits (113), Expect = 4e-05
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA +YL +H DI FL KK E+ R + L G+ +PD+F + L
Sbjct: 245 RQGAGVVYLNVFHPDIIAFLSTKKENADEKVRVKTLSLGVTVPDKFYELARKNEDMYLFS 304
Query: 61 P 61
P
Sbjct: 305 P 305
Score = 33.9 bits (78), Expect = 0.45
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
DWAAL++ + K G+ + +A P S + I + S P T I R
Sbjct: 557 DWAALRDAVMKDGLYHQNRLAVAPNGSISYINDTSASIHPITQRIEER 604
>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 714
Score = 93.2 bits (232), Expect = 2e-19
Identities = 123/504 (24%), Positives = 196/504 (38%), Gaps = 104/504 (20%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD + + L
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKENEDMYLFS 310
Query: 151 PNTC-----RGLSD-SWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYML 204
P + +D S EK+D++ K I AR+ + + + Q E+G PY++
Sbjct: 311 PYDVERVYGKPFADISVTEKYDEMVADERIRKKKIN---AREFFQTLAEIQFESGYPYIM 367
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVA------------VCNLASIALNMY 252
++D NR + G I SNLC+EI++ S E CNL S +
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASEYNEDLSYAHIGKDISCNLGS----LN 421
Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDV-NFYPVEEARNSNMRHRPIGIGVQGLADLF 311
I + +F + + A + L + D+ + V N IG+G L
Sbjct: 422 IAHTMDSPDFGRTVETA---IRALTAVSDMSHIRSVPSIEKGNAASHAIGLGQMNLHGYL 478
Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPY-QTYEGSPVSQGIL--QYD 368
+ + + E+ F T+ Y AL AS +A G +E S + G +Y
Sbjct: 479 AREGIFYGSEEALDFTNIYFYTVTYHALRASNLLARERGETFAGFEQSKYASGEYFDKYT 538
Query: 369 --MW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
W G+T DWA L++ + +HG+ N L A PT S + I +
Sbjct: 539 QQDWQPKTAKVRELFARAGITIPTQEDWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHS 598
Query: 413 NESFEPYTSNIYSR------RVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQ 466
S P S I R RV + N DN+
Sbjct: 599 TSSIHPIVSKIEIRKEGKIGRVYYPAPYMTN--------------DNL------------ 632
Query: 467 DIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMA------EINYAKMS 520
+ Y+ +EI + ++D A +DQ SL ++ +IN A++
Sbjct: 633 ----------EYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFPDTATTRDINKAQI- 681
Query: 521 SMHFHGWKLGLKTGMYYLRTKPAA 544
+ W+ G+KT +YY+R + A
Sbjct: 682 ----YAWRKGIKT-LYYIRLRQMA 700
Score = 43.9 bits (104), Expect = 4e-04
Identities = 43/178 (24%), Positives = 70/178 (39%), Gaps = 54/178 (30%)
Query: 783 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR------RVLSGE 836
DWA L++ + +HG+ N L A PT S + I + S P S I R RV
Sbjct: 565 DWAQLRDDVMRHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPA 624
Query: 837 FQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLD 896
+ N DN+ + Y+ +EI + ++D
Sbjct: 625 PYMTN--------------DNL----------------------EYYQDAYEIGPEKIID 648
Query: 897 MAADRGAFIDQSQSLNIYMA------EINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
A +DQ SL ++ +IN A++ + W+ G+KT +YY+R + A
Sbjct: 649 TYAAATQHVDQGLSLTLFFPDTATTRDINKAQI-----YAWRKGIKT-LYYIRLRQMA 700
Score = 39.7 bits (93), Expect = 0.009
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPD 44
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPD 294
>gnl|CDD|236049 PRK07562, PRK07562, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 1220
Score = 56.9 bits (138), Expect = 5e-08
Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 32/228 (14%)
Query: 132 IPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAI 191
+ DEF+R VE+D W+L +GK + + AR LW I
Sbjct: 403 VTDEFLRAVENDGDWNL----------------------TARTDGKVAKTLKARDLWEKI 440
Query: 192 LDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNM 251
+ + P + + N G I+ SN C+ EY D+ A CNLAS+ L
Sbjct: 441 GYAAWASADPGLQFNTTINDWHTCPASGPIRASNPCS---EYMFLDDTA-CNLASLNLLT 496
Query: 252 YINPADKTYNFTKLKDVAKIVTKNLNKIIDV---NFYPVEEARNSNMRHRPIGIGVQGLA 308
+ + K ++ + ++ T L I V F E A S R +G+G +
Sbjct: 497 FRDEDTKRFDVEAYEHACRLWTVVLE--ISVLMAQFPSKEIAELS-YEFRTLGLGYANIG 553
Query: 309 DLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYE 356
L + M +P+D +E R + + + A S E+A GP+ YE
Sbjct: 554 GLLMTMGIPYDSDEGRAICGALSAIMTGVAYATSAEMAKELGPFPGYE 601
Score = 29.9 bits (68), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 42 IPDEFMRRVESDAQWSL 58
+ DEF+R VE+D W+L
Sbjct: 403 VTDEFLRAVENDGDWNL 419
>gnl|CDD|153083 cd00576, RNR_PFL, Ribonucleotide reductase and Pyruvate formate
lyase. Ribonucleotide reductase (RNR) and pyruvate
formate lyase (PFL) are believed to have diverged from a
common ancestor. They have a structurally similar
ten-stranded alpha-beta barrel domain that hosts the
active site, and are radical enzymes. RNRs are found in
all organisms and provide the only mechanism by which
nucleotides are converted to deoxynucleotides. RNRs are
separated into three classes based on their
metallocofactor usage. Class I RNRs use a diiron-tyrosyl
radical while Class II RNRs use coenzyme B12
(adenosylcobalamin, AdoCbl). Class III RNRs use an FeS
cluster and S-adenosylmethionine to generate a glycyl
radical. PFL, an essential enzyme in anaerobic bacteria,
catalyzes the conversion of pyruvate and CoA to
acteylCoA and formate in a mechanism that uses a glycyl
radical.
Length = 401
Score = 41.7 bits (98), Expect = 0.002
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 243 NLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGI 302
NLA I D L+++A + + L+ +ID + + R +G+
Sbjct: 206 NLARIMEKAINGSMDVVLEE--LEELAFLAVRALDCVIDSHDERIPTIELGGDERRTVGL 263
Query: 303 GVQGLADLFIQMRLPFDCN-ESRLLNKQIFETIYYGALEAS 342
G+ G+ADL I++ L + E+ L ++ + + ++A+
Sbjct: 264 GIAGVADLLIKLGLEKVGDPEADDLAAELVDQLKKHLVKAT 304
>gnl|CDD|233901 TIGR02505, RTPR, ribonucleoside-triphosphate reductase,
adenosylcobalamin-dependent. This model represents a
group of adenosylcobalamin(B12)-dependent ribonucleotide
reductases (RNR) related to the characterized species
from Lactococcus leichmannii. RNR's are responsible for
the conversion of the ribose sugar of RNA into the
deoxyribose sugar of DNA. This is the rate-limiting step
of DNA biosynthesis. Thus model identifies NrdJ enzymes
only in cyanobacteria, lactococcus and certain
bacteriophage. A separate model (TIGR02504) identifies a
larger group of divergent B12-dependent RNR's [Purines,
pyrimidines, nucleosides, and nucleotides,
2'-Deoxyribonucleotide metabolism].
Length = 713
Score = 32.6 bits (74), Expect = 1.3
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 210 NRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVA 269
N + G ++ +N C EI CNL + L + L+
Sbjct: 352 NGRYQAGEDGDVEGTNPCGEI----LLANGEPCNLFEVNLLAFEEDGWG------LQRAF 401
Query: 270 KIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLF 311
+ + ++ Y E +R ++R IG+ + G+ D
Sbjct: 402 ALAARYAKRVTFSP-YDDEISREIIQKNRRIGVSMSGIQDFL 442
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 31.6 bits (72), Expect = 1.8
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 17/67 (25%)
Query: 563 KDARSQEEIQADQEQAMAAMICRRDNKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIF 622
K+A +QEE A Q + MAA +R+N +G G L IQM PF F
Sbjct: 108 KNATTQEEKMAAQTELMAA---QRENGISMLGGIGCLPLLIQM--PF------------F 150
Query: 623 ETIYYGA 629
+Y+ A
Sbjct: 151 SALYFAA 157
>gnl|CDD|238545 cd01125, repA, Hexameric Replicative Helicase RepA. RepA is
encoded by a plasmid, which is found in most Gram
negative bacteria. RepA is a 5'-3' DNA helicase which
can utilize ATP, GTP and CTP to a lesser extent.
Length = 239
Score = 30.1 bits (68), Expect = 4.6
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 440 LLRDLVELGLW--DDNMKDQLIVNNGSIQDIEGIPQKLKDLY 479
+ R L + D+ D+L +++G IQ I + +
Sbjct: 56 IHRRLEAILQHLEPDDAGDRLFIDSGRIQPISIAREGRIIVV 97
Score = 30.1 bits (68), Expect = 4.6
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 844 LLRDLVELGLW--DDNMKDQLIVNNGSIQDIEGIPQKLKDLY 883
+ R L + D+ D+L +++G IQ I + +
Sbjct: 56 IHRRLEAILQHLEPDDAGDRLFIDSGRIQPISIAREGRIIVV 97
>gnl|CDD|233877 TIGR02466, TIGR02466, conserved hypothetical protein. This family
consists of uncharacterized proteins in Caulobacter
crescentus CB15, Bdellovibrio bacteriovorus HD100,
Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi
DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The
context of nearby genes differs substantially between
members and does point to any specific biological role
[Hypothetical proteins, Conserved].
Length = 201
Score = 29.8 bits (67), Expect = 5.4
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 519 MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTK--MANAMASKDAR 566
S H H + +G YY++T AI+F + MA M +A+
Sbjct: 108 THSPHLH--PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAK 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 51,125,782
Number of extensions: 5059790
Number of successful extensions: 4294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4141
Number of HSP's successfully gapped: 153
Length of query: 998
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 892
Effective length of database: 6,236,078
Effective search space: 5562581576
Effective search space used: 5562581576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.5 bits)