RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1689
(998 letters)
>3hnc_A Ribonucleoside-diphosphate reductase large subuni; oxidoreductase,
ribonucleotide reductase, allosteric enzyme, binding,
DNA replication; HET: TTP; 2.41A {Homo sapiens} PDB:
3hnd_A* 3hne_A* 3hnf_A*
Length = 792
Score = 768 bits (1984), Expect = 0.0
Identities = 358/502 (71%), Positives = 420/502 (83%), Gaps = 7/502 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 412
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ + TY+F KL +V K
Sbjct: 413 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTK 471
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 472 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 531
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 532 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 591
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 592 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 651
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 652 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 711
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQEE 570
+AE NY K++SMHF+GWK GLKTGMYYLRT+PAAN IQFT++K K+ +
Sbjct: 712 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAANPIQFTLNKEKLKDKEKVSKE----- 766
Query: 571 IQADQEQAMAAMICRRDNKEDC 592
+ ++E+ AAM+C +N+++C
Sbjct: 767 -EEEKERNTAAMVCSLENRDEC 787
Score = 366 bits (941), Expect = e-113
Identities = 156/229 (68%), Positives = 185/229 (80%), Gaps = 6/229 (2%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 566 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 625
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 626 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 685
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+PAA
Sbjct: 686 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRPAA 745
Query: 949 NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMICRRDNKEDCL 997
N IQFT++K K+ + + ++E+ AAM+C +N+++CL
Sbjct: 746 NPIQFTLNKEKLKDKEKVSKE------EEEKERNTAAMVCSLENRDECL 788
Score = 147 bits (372), Expect = 2e-36
Identities = 64/98 (65%), Positives = 76/98 (77%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 293 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
PN C GL + WGE+F+ LY YE +G V A ++
Sbjct: 353 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLW 390
Score = 136 bits (344), Expect = 4e-33
Identities = 67/91 (73%), Positives = 75/91 (82%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A GPY+TYEGSPVS
Sbjct: 503 IGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVS 562
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+GILQYDMW VTPTDLWDW LK YG+
Sbjct: 563 KGILQYDMWNVTPTDLWDWKVLKEKIAKYGI 593
Score = 74.9 bits (184), Expect = 8e-14
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
L+K+ S +V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRD
Sbjct: 86 LHKETKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 140
Query: 762 FNYNFFGFK 770
F+YN+FGFK
Sbjct: 141 FSYNYFGFK 149
Score = 65.7 bits (160), Expect = 5e-11
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
+LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I
Sbjct: 387 QQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 423
>2wgh_A Ribonucleoside-diphosphate reductase large subunit; DNA
replication, allosteric enzyme, nucleotide-binding,
cytoplasm, ATP-binding, polymorphism; HET: DTP; 2.30A
{Homo sapiens}
Length = 676
Score = 745 bits (1924), Expect = 0.0
Identities = 341/454 (75%), Positives = 390/454 (85%), Gaps = 1/454 (0%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
PN C GL + WGE+F+ LY YE +G+ + V A++LW+AI++SQ ETGTPYMLYKD+CN
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLWYAIIESQTETGTPYMLYKDSCN 339
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAK 270
RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLAS+ALNMY+ + TY+F KL +V K
Sbjct: 340 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASLALNMYVTS-EHTYDFKKLAEVTK 398
Query: 271 IVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQI 330
+V +NLNKIID+N+YPV EA SN RHRPIGIGVQGLAD FI MR PF+ E++LLNKQI
Sbjct: 399 VVVRNLNKIIDINYYPVPEACLSNKRHRPIGIGVQGLADAFILMRYPFESAEAQLLNKQI 458
Query: 331 FETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKH 390
FETIYYGALEASC++A GPY+TYEGSPVS+GILQYDMW VTPTDLWDW LKEKIAK+
Sbjct: 459 FETIYYGALEASCDLAKEQGPYETYEGSPVSKGILQYDMWNVTPTDLWDWKVLKEKIAKY 518
Query: 391 GVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLW 450
G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY+RRVLSGEFQ+VN HLL+DL E GLW
Sbjct: 519 GIRNSLLIAPMPTASTAQILGNNESIEPYTSNIYTRRVLSGEFQIVNPHLLKDLTERGLW 578
Query: 451 DDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIY 510
+ MK+Q+I NGSIQ I IP LK LYKTVWEI QKTVL MAA+RGAFIDQSQSLNI+
Sbjct: 579 HEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWEISQKTVLKMAAERGAFIDQSQSLNIH 638
Query: 511 MAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 544
+AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 639 IAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672
Score = 338 bits (868), Expect = e-104
Identities = 138/180 (76%), Positives = 154/180 (85%)
Query: 769 FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIY 828
+YDMW VTPTDLWDW LKEKIAK+G+RNSLLIAPMPTASTAQILGNNES EPYTSNIY
Sbjct: 493 LQYDMWNVTPTDLWDWKVLKEKIAKYGIRNSLLIAPMPTASTAQILGNNESIEPYTSNIY 552
Query: 829 SRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+RRVLSGEFQ+VN HLL+DL E GLW + MK+Q+I NGSIQ I IP LK LYKTVWE
Sbjct: 553 TRRVLSGEFQIVNPHLLKDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQLYKTVWE 612
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
I QKTVL MAA+RGAFIDQSQSLNI++AE NY K++SMHF+GWK GLKTGMYYLRT+
Sbjct: 613 ISQKTVLKMAAERGAFIDQSQSLNIHIAEPNYGKLTSMHFYGWKQGLKTGMYYLRTRAHH 672
Score = 158 bits (400), Expect = 3e-40
Identities = 64/98 (65%), Positives = 76/98 (77%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFAIYLEPWH DIF+FL+LKKNTGKEE RARDLF+ LWIPD FM+RVE++ WSLMC
Sbjct: 220 RPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLFFALWIPDLFMKRVETNQDWSLMC 279
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEGLVYFRPGAFAIY 98
PN C GL + WGE+F+ LY YE +G V A ++
Sbjct: 280 PNECPGLDEVWGEEFEKLYASYEKQGRVRKVVKAQQLW 317
Score = 141 bits (356), Expect = 9e-35
Identities = 67/91 (73%), Positives = 75/91 (82%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGVQGLAD FI MR PF+ E++LLNKQIFETIYYGALEASC++A GPY+TYEGSPVS
Sbjct: 430 IGVQGLADAFILMRYPFESAEAQLLNKQIFETIYYGALEASCDLAKEQGPYETYEGSPVS 489
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+GILQYDMW VTPTDLWDW LK YG+
Sbjct: 490 KGILQYDMWNVTPTDLWDWKVLKEKIAKYGI 520
Score = 79.5 bits (196), Expect = 3e-15
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 5/69 (7%)
Query: 702 LYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRD 761
L+K+ S +V+E+LYN +N G +PM++ +I++ N DRLNSAIIYDRD
Sbjct: 13 LHKETKKVFS-----DVMEDLYNYINPHNGKHSPMVAKSTLDIVLANKDRLNSAIIYDRD 67
Query: 762 FNYNFFGFK 770
F+YN+FGFK
Sbjct: 68 FSYNYFGFK 76
Score = 59.8 bits (145), Expect = 3e-09
Identities = 29/40 (72%), Positives = 34/40 (85%)
Query: 680 VYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
V +LW+AI++SQ ETGTPYMLYKD+CNRKSNQQNL I
Sbjct: 311 VKAQQLWYAIIESQTETGTPYMLYKDSCNRKSNQQNLGTI 350
>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic
ribonucleotide reductase, nucleotide analogs, all enzyme
ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A*
3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A*
Length = 888
Score = 751 bits (1941), Expect = 0.0
Identities = 306/495 (61%), Positives = 388/495 (78%), Gaps = 5/495 (1%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 151 PNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN 210
P + GLSD +G++F+ LY +YE EG+ + A+KLW++IL++Q ETGTP+++YKDACN
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEGRGKT-IKAQKLWYSILEAQTETGTPFVVYKDACN 411
Query: 211 RKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPAD----KTYNFTKLK 266
RKSNQ+NLG IK SNLC EIVEY++ DE AVCNLAS+AL +I ++ TYNF KL
Sbjct: 412 RKSNQKNLGVIKSSNLCCEIVEYSAPDETAVCNLASVALPAFIETSEDGKTSTYNFKKLH 471
Query: 267 DVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLL 326
++AK+VT+NLN++ID N+YPVEEAR SNMRHRPI +GVQGLAD F+ +RLPFD E+RLL
Sbjct: 472 EIAKVVTRNLNRVIDRNYYPVEEARKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLL 531
Query: 327 NKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEK 386
N QIFETIY+ ++EASCE+A +DGPY+T++GSP SQGILQ+DMW P +WDW L++
Sbjct: 532 NIQIFETIYHASMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKD 591
Query: 387 IAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVE 446
I KHGVRNSL +APMPTAST+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+
Sbjct: 592 IMKHGVRNSLTMAPMPTASTSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVD 651
Query: 447 LGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
LG+WD+ MK LI NGSIQ + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS S
Sbjct: 652 LGIWDEGMKQYLITQNGSIQGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHS 711
Query: 507 LNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDAR 566
LN+++ K++SMHF+GWK GLKTGMYYLRT+ A+ AIQFTID+ A +
Sbjct: 712 LNLFLRAPTMGKLTSMHFYGWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQATENVADI 771
Query: 567 SQEEIQADQEQAMAA 581
S + + + +
Sbjct: 772 SNLKRPSYMPSSASY 786
Score = 356 bits (915), Expect = e-108
Identities = 138/296 (46%), Positives = 186/296 (62%), Gaps = 24/296 (8%)
Query: 709 RKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAII----------- 757
RKSN ++ + + + + R P S++ + ++ + + A +
Sbjct: 496 RKSNMRHRPIALGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDG 555
Query: 758 -YDRDFNYNFFG-------FKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTAS 809
Y+ F G ++DMW P +WDW L++ I KHGVRNSL +APMPTAS
Sbjct: 556 PYE-----TFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSLTMAPMPTAS 610
Query: 810 TAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSI 869
T+QILG NE FEP TSN+YSRRVLSGEFQVVN +LLRDLV+LG+WD+ MK LI NGSI
Sbjct: 611 TSQILGYNECFEPVTSNMYSRRVLSGEFQVVNPYLLRDLVDLGIWDEGMKQYLITQNGSI 670
Query: 870 QDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFH 929
Q + +PQ+LKDLYKTVWEI QKT+++MAADR +IDQS SLN+++ K++SMHF+
Sbjct: 671 QGLPNVPQELKDLYKTVWEISQKTIINMAADRSVYIDQSHSLNLFLRAPTMGKLTSMHFY 730
Query: 930 GWKLGLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAA 985
GWK GLKTGMYYLRT+ A+ AIQFTID+ A + S + + + +
Sbjct: 731 GWKKGLKTGMYYLRTQAASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASY 786
Score = 143 bits (363), Expect = 3e-35
Identities = 54/86 (62%), Positives = 68/86 (79%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
RPGAFA+YLEPWH DIFDF++++KN GKEE RARDLF LWIPD FM+RVE + W+L
Sbjct: 293 RPGAFALYLEPWHADIFDFIDIRKNHGKEEIRARDLFPALWIPDLFMKRVEENGTWTLFS 352
Query: 61 PNACRGLSDSWGEKFDDLYKKYEAEG 86
P + GLSD +G++F+ LY +YE EG
Sbjct: 353 PTSAPGLSDCYGDEFEALYTRYEKEG 378
Score = 135 bits (342), Expect = 1e-32
Identities = 54/91 (59%), Positives = 72/91 (79%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+GVQGLAD F+ +RLPFD E+RLLN QIFETIY+ ++EASCE+A +DGPY+T++GSP S
Sbjct: 507 LGVQGLADTFMLLRLPFDSEEARLLNIQIFETIYHASMEASCELAQKDGPYETFQGSPAS 566
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
QGILQ+DMW P +WDW L+ + +G+
Sbjct: 567 QGILQFDMWDQKPYGMWDWDTLRKDIMKHGV 597
Score = 74.2 bits (182), Expect = 1e-13
Identities = 36/71 (50%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 700 YMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYD 759
L+K Q +V+E+LY VN TG PMISD Y I+M+N D+LNSAI+YD
Sbjct: 84 SNLHKQTTK-----QFSKVVEDLYRYVNAATGKPAPMISDDVYNIVMENKDKLNSAIVYD 138
Query: 760 RDFNYNFFGFK 770
RDF Y++FGFK
Sbjct: 139 RDFQYSYFGFK 149
Score = 65.3 bits (159), Expect = 8e-11
Identities = 26/37 (70%), Positives = 34/37 (91%)
Query: 683 LKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVI 719
KLW++IL++Q ETGTP+++YKDACNRKSNQ+NL VI
Sbjct: 386 QKLWYSILEAQTETGTPFVVYKDACNRKSNQKNLGVI 422
>2xap_A Ribonucleoside-diphosphate reductase 1 subunit alpha;
oxidoreductase, DNA replication, allosteric enzyme,
nucleotide-binding; HET: NIY; 2.10A {Escherichia coli}
PDB: 2xo5_A* 2x0x_A 2r1r_A 3r1r_A* 3uus_A* 1r1r_A
2xav_A* 7r1r_A 2xax_A* 6r1r_A 2xaw_A* 5r1r_A 2xo4_A*
2xak_A* 4r1r_A* 2xaz_A* 2xay_A* 1rlr_A 1qfn_B
Length = 761
Score = 687 bits (1775), Expect = 0.0
Identities = 125/491 (25%), Positives = 200/491 (40%), Gaps = 67/491 (13%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 151 PNTCRGLSDSWG---EKFDDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ E+F+ LY KYE + +Q V A +L+ ++ + TG Y+
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 417
Query: 207 DACNRKSN-QQNLGTIKCSNLCTEIVEYTS--------KDEVAVCNLASIALNMYINPAD 257
D CN S + ++ SNLC EI T E+A+C L++ L
Sbjct: 418 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNL-------G 470
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
N +L+++A + + L+ ++D YP+ A+ M R +GIGV A +
Sbjct: 471 AINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKR 530
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWG------ 371
+ + L + FE I Y L+AS E+A G + + ++GIL D +
Sbjct: 531 YSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTI 590
Query: 372 VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSG 431
+DW AL+E I HG+RNS L A MP+ +++QI EP + + G
Sbjct: 591 ANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDG 650
Query: 432 EFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTV 490
+ V + L D Y+ +WE+P
Sbjct: 651 ILRQVVPDY--------------------------------EHLHDAYELLWEMPGNDGY 678
Query: 491 LDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHFHGWKLGLKTGMYYLRTKPA 543
L + FIDQS S N + ++ +K G+KT +Y T+
Sbjct: 679 LQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYXQNTRDG 737
Query: 544 ANAIQFTIDKT 554
A Q + +
Sbjct: 738 AEDAQDDLVPS 748
Score = 232 bits (595), Expect = 7e-65
Identities = 44/204 (21%), Positives = 69/204 (33%), Gaps = 47/204 (23%)
Query: 769 FKYDMWG------VTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 822
D + +DW AL+E I HG+RNS L A MP+ +++QI EP
Sbjct: 578 LPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEP 637
Query: 823 YTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 882
+ + G + V + L D
Sbjct: 638 PRGYVSIKASKDGILRQVVPDY--------------------------------EHLHDA 665
Query: 883 YKTVWEIP-QKTVLDMAADRGAFIDQSQSLNIYMAEINY-------AKMSSMHFHGWKLG 934
Y+ +WE+P L + FIDQS S N + ++ +K G
Sbjct: 666 YELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFG 725
Query: 935 LKTGMYYLRTKPAANAIQFTIDKT 958
+KT +Y T+ A Q + +
Sbjct: 726 VKT-LYXQNTRDGAEDAQDDLVPS 748
Score = 163 bits (414), Expect = 1e-41
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 298 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 357
Query: 61 PNACRGLSDSWG---EKFDDLYKKYEAEGLVYFR 91
P+ GL D++ E+F+ LY KYE + + +
Sbjct: 358 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQ 391
Score = 131 bits (331), Expect = 2e-31
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
IGV A + + + L + FE I Y L+AS E+A G + + +
Sbjct: 515 IGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYA 574
Query: 653 QGILQYDMWG------VTPTDLWDWAALKVLALVYGL 683
+GIL D + +DW AL+ +GL
Sbjct: 575 KGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGL 611
Score = 66.2 bits (162), Expect = 4e-11
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSN-QQNLEVI 719
+L+ ++ + TG Y+ D CN S + +
Sbjct: 397 ELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPV 433
Score = 55.4 bits (134), Expect = 7e-08
Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 658 YDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLE 717
YD G+ +D+ + L+ + L +++ + L K A +
Sbjct: 50 YD--GIKTSDIHETIIKAAADLISRDAPDYQYLAARLAI---FHLRKKAYGQFE------ 98
Query: 718 VIEELYNMVNK--ETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFGFK 770
LY+ V K E G + + + E + ++++ I +DRD +++ K
Sbjct: 99 -PPALYDHVVKMVEMGKYDNHLLEDYTE---EEFKQMDTFIDHDRDMTFSYAAVK 149
>3o0q_A Ribonucleoside-diphosphate reductase; alpha/beta barrel,
adenosylcobalamin dependent, ribonucle reductase; HET:
TTP GDP ADN; 1.80A {Thermotoga maritima} PDB: 1xjf_A*
1xjg_A* 1xje_A* 1xjk_A* 1xjm_A* 1xjn_A* 3o0n_A* 3o0o_A*
1xjj_A*
Length = 644
Score = 640 bits (1654), Expect = 0.0
Identities = 98/467 (20%), Positives = 189/467 (40%), Gaps = 39/467 (8%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 148
R GA L H DI +F++ KK NTG+ +L G + E ++ E D + L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 149 MCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDA 208
P ++V R+L+ I + ++G P + +
Sbjct: 267 SHP-----------------------RSTIRKKVKIRELFRKIATNAWKSGDPGLAFLGE 303
Query: 209 CNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDV 268
N+ I +N C EI + CNL SI + + N + + L+++
Sbjct: 304 MNKYYPLYPHRKINSTNPCGEIGLS----DYEACNLGSIDVAKFYN--NGFVDLEALQEL 357
Query: 269 AKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
+I + L+ +IDVN +P+++ + R +G+G+ G ADL ++ +P++ E+R
Sbjct: 358 VQIAVRFLDNVIDVNVFPIDKITKAVKESRRLGLGIMGFADLLYKLEIPYNSQEARDFAA 417
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
+ I A S E+ G + E S + + + ++ D K+
Sbjct: 418 NLMAFIALHAHRTSYELGKEKGNFPLLEISRYRTE-DNFVPFAMGMSNYDDEIREVMKMT 476
Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELG 448
K RN L+ PT S + I + EP Y+R V + + ++
Sbjct: 477 KEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLAYTRFVTKEDGTKEPLLYVNQVLREK 536
Query: 449 LWDDNMKD--QLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQS 506
L + +K + ++ GS++DI +P+K+K ++ +I L M ++D + S
Sbjct: 537 LNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVVALDIDPMDHLLMQDAFQRYVDNNIS 596
Query: 507 LNIYMAE-INYAKMSSMHFHGWKLGLKTGMYY----LRTKPAANAIQ 548
I M + + +++ + ++ Y L+T+ A++
Sbjct: 597 KTINMPQSATVDDVLNVYLEALRTNVRGITVYRDGSLQTQVLTKALK 643
Score = 269 bits (689), Expect = 1e-78
Identities = 35/192 (18%), Positives = 77/192 (40%), Gaps = 7/192 (3%)
Query: 768 GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNI 827
+ + + ++ D K+ K RN L+ PT S + I + EP
Sbjct: 452 EDNFVPFAMGMSNYDDEIREVMKMTKEFRRNVALLTIAPTGSISNIADTSSGLEPNFLLA 511
Query: 828 YSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKD--QLIVNNGSIQDIEGIPQKLKDLYKT 885
Y+R V + + ++ L + +K + ++ GS++DI +P+K+K ++
Sbjct: 512 YTRFVTKEDGTKEPLLYVNQVLREKLNPEILKRIEKELIEKGSLKDIPDVPEKIKKVFVV 571
Query: 886 VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYY--- 941
+I L M ++D + S I M + + +++ + ++ Y
Sbjct: 572 ALDIDPMDHLLMQDAFQRYVDNNISKTINMPQSATVDDVLNVYLEALRTNVRGITVYRDG 631
Query: 942 -LRTKPAANAIQ 952
L+T+ A++
Sbjct: 632 SLQTQVLTKALK 643
Score = 115 bits (289), Expect = 2e-26
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVS 652
+G+ G ADL ++ +P++ E+R + I A S E+ G + E S
Sbjct: 391 LGIMGFADLLYKLEIPYNSQEARDFAANLMAFIALHAHRTSYELGKEKGNFPLLEISRYR 450
Query: 653 QGILQYDMWGVTPTDLWDWAALKVLALVYGL 683
+ + + ++ D +
Sbjct: 451 TE-DNFVPFAMGMSNYDDEIREVMKMTKEFR 480
Score = 103 bits (259), Expect = 7e-23
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKK-NTGKEEFRARDLFYGLWI-PDEFMRRVESDAQWSL 58
R GA L H DI +F++ KK NTG+ +L G + E ++ E D + L
Sbjct: 207 RRGALMGILNINHPDIEEFIDAKKENTGEAVLNFFNLSVGFPMDKKEILKLYEEDGELEL 266
Query: 59 MCPN 62
P
Sbjct: 267 SHPR 270
Score = 70.8 bits (174), Expect = 1e-12
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIE 720
+L+ I + ++G P + + N+ I
Sbjct: 281 ELFRKIATNAWKSGDPGLAFLGEMNKYYPLYPHRKIN 317
Score = 31.1 bits (71), Expect = 2.4
Identities = 3/20 (15%), Positives = 6/20 (30%)
Query: 751 RLNSAIIYDRDFNYNFFGFK 770
+L+ I D +
Sbjct: 2 KLSDLISRWIDVEPSKNAQI 21
>1peq_A Ribonucleoside-diphosphate reductase 2 alpha chain; stranded
alpha/beta barrel, protein-specificity-effector complex,
DTTP; HET: TTP; 2.80A {Salmonella typhimurium} SCOP:
a.98.1.1 c.7.1.2 PDB: 1peo_A* 1pem_A* 1peu_A* 2bq1_E*
Length = 714
Score = 628 bits (1622), Expect = 0.0
Identities = 105/498 (21%), Positives = 188/498 (37%), Gaps = 84/498 (16%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310
Query: 151 PNTCRGLSDSWGEKFDDL-----YKKYEAEGKFI-RQVPARKLWFAILDSQIETGTPYML 204
P + +G+ F D+ Y + A+ + AR + + + Q E+G PY++
Sbjct: 311 PYDIQRR---YGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIM 367
Query: 205 YKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKD------------EVAVCNLASIALNMY 252
++D NR + G I SNLC+EI++ S CNL S+ +
Sbjct: 368 FEDTVNRANPIA--GRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHV 425
Query: 253 INPADKTYNFTKLKDVAKIVTKNLNKIIDVNFY-PVEEARNSNMRHRPIGIGVQGLADLF 311
+ + + + + L + D++ V N IG+G L
Sbjct: 426 M-------DSPDIGRTVETAIRGLTAVSDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYL 478
Query: 312 IQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGIL----Q 366
+ + + E+ F TI + A+ S +A G + + S + G
Sbjct: 479 AREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYL 538
Query: 367 YDMW--------------GVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGN 412
D W G+T W L++ + ++G+ N L A PT S + I
Sbjct: 539 QDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHA 598
Query: 413 NESFEPYTSNIYSRRV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGI 471
S P + I R+ +G +
Sbjct: 599 TSSIHPIVAKIEIRKEGKTGRVYYPAPFM------------------------------- 627
Query: 472 PQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLG 530
+ D+Y+ ++I + ++D A+ +DQ SL ++ + ++ + W+ G
Sbjct: 628 TNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKG 687
Query: 531 LKTGMYYLRTKPAANAIQ 548
+K+ +YY+R + A
Sbjct: 688 IKS-LYYIRLRQLALEGT 704
Score = 231 bits (592), Expect = 9e-65
Identities = 33/184 (17%), Positives = 68/184 (36%), Gaps = 34/184 (18%)
Query: 771 YDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
+ G+T W L++ + ++G+ N L A PT S + I S P + I R
Sbjct: 553 FARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIR 612
Query: 831 RV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
+ +G + + D+Y+ ++I
Sbjct: 613 KEGKTGRVYYPAPFM-------------------------------TNENLDMYQDAYDI 641
Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYMAE-INYAKMSSMHFHGWKLGLKTGMYYLRTKPAA 948
+ ++D A+ +DQ SL ++ + ++ + W+ G+K+ +YY+R + A
Sbjct: 642 GPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLRQLA 700
Query: 949 NAIQ 952
Sbjct: 701 LEGT 704
Score = 146 bits (370), Expect = 3e-36
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 251 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 310
Query: 61 PNACRGLSDSWGEKFDDL-----YKKYEAEGLVYFR 91
P + +G+ F D+ Y + A+ V
Sbjct: 311 PYDIQRR---YGKPFGDIAISERYDELIADPHVRKT 343
Score = 110 bits (276), Expect = 9e-25
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 19/110 (17%)
Query: 593 IGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPV 651
+G L + + + E+ F TI + A+ S +A G + + S
Sbjct: 469 LGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRY 528
Query: 652 SQGIL----QYDMW--------------GVTPTDLWDWAALKVLALVYGL 683
+ G D W G+T W L+ + YG+
Sbjct: 529 ASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRYGI 578
Score = 63.5 bits (155), Expect = 2e-10
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 684 KLWFAILDSQIETGTPYMLYKDACNRKSNQQ 714
+ + + Q E+G PY++++D NR +
Sbjct: 349 DFFQTLAEIQFESGYPYIMFEDTVNRANPIA 379
Score = 33.4 bits (77), Expect = 0.42
Identities = 10/83 (12%), Positives = 22/83 (26%), Gaps = 13/83 (15%)
Query: 701 MLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTP-------MISDKHYEIIM------K 747
LY A + + ++ + V + T ++ + +Y+ +
Sbjct: 24 NLYDKAGHIQFDKDQQAIDAFFATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRA 83
Query: 748 NADRLNSAIIYDRDFNYNFFGFK 770
RL F G
Sbjct: 84 FVLRLFEHAHASGFRFQTFLGAW 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.9 bits (196), Expect = 3e-15
Identities = 85/680 (12%), Positives = 195/680 (28%), Gaps = 215/680 (31%)
Query: 270 KIVTKNLNKII-DVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNK 328
I++ + + + + V++ S + I + D F LL+K
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWT----LLSK 74
Query: 329 QIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIA 388
Q E + +E +L+ + + + L I
Sbjct: 75 Q--EEMVQKFVE----------------------EVLRIN---------YKF--LMSPIK 99
Query: 389 KHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRD----- 443
R ++ M ++ +N+ F Y N+ + + + LL
Sbjct: 100 TE-QRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQ----PYLKLRQALLELRPAKN 152
Query: 444 -------------LVELGLWDDNMKDQL---I--VNNGSIQDIEGIPQKLKDLYKTVWEI 485
+ ++ ++ I +N + E + + L+ L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL------ 206
Query: 486 PQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKLGLKTGMYYLRTKPAAN 545
+ + + D S ++ + H + L+ L++KP N
Sbjct: 207 -----YQIDPNWTSRSDHSSNI-------------KLRIHSIQAELR---RLLKSKPYEN 245
Query: 546 AIQFTIDKTKMANAMASKDARSQEEIQA-DQEQAMAAMICR-----RDNK-EDCIGVQGL 598
+ + + ++ + A + C+ R + D +
Sbjct: 246 CL-LVLL-----------NVQNAKAWNAFNLS-------CKILLTTRFKQVTDFLSAATT 286
Query: 599 ADLFI-QMRLPFDCNESRLLNKQIFETIYYGALEASC-EIAARDGPYQTYEGSPVSQGI- 655
+ + + +E K + + +D P + +P I
Sbjct: 287 THISLDHHSMTLTPDEV----KSLL---------LKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 656 --LQYDMWGVTPTDLWD-W-------------AALKVL--ALVYGLKLWFAIL--DSQIE 695
D WD W ++L VL A + ++ + I
Sbjct: 334 AESIRDG-----LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 696 TGTPYMLYKDACNRKSNQQNLEVIEELYN--MVNKETGTRTPMISDKHYEIIMKNADR-- 751
T +++ D + V+ +L+ +V K+ T I + E+ +K +
Sbjct: 389 TILLSLIWFD----VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 752 LNSAII--Y-------------DRDFNYNFFGFKYDMWGVTPTDLWD----------WAA 786
L+ +I+ Y Y + + + + + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-- 502
Query: 787 LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPY---TSNIYSRRVLS-GEF-QVVN 841
L++KI A + S L + ++PY Y R V + +F +
Sbjct: 503 LEQKIRHDS------TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Query: 842 HHLLR----DLVELGLWDDN 857
+L+ DL+ + L ++
Sbjct: 557 ENLICSKYTDLLRIALMAED 576
Score = 61.0 bits (147), Expect = 2e-09
Identities = 93/611 (15%), Positives = 174/611 (28%), Gaps = 182/611 (29%)
Query: 430 SGEFQVVNHHLLRDLVELGLWDDNMKD-----QLIVNNGSIQDIEGIPQKLKDLYKTVWE 484
+GE Q +L + + + + KD + I++ I I + + W
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 485 IPQK----------TVLD------MAADRGAFIDQSQSLNIYMAEIN--------YAKMS 520
+ K VL M+ + S +Y+ + + +AK +
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 521 SMHFHGWKLGLKTGMYYLRTKPAANAIQFTID------KTKMANAMASKDARSQEEIQAD 574
L L+ + LR PA N + ID KT +A ++Q
Sbjct: 131 VSRLQP-YLKLRQALLELR--PAKNVL---IDGVLGSGKTWVA-LDVCLS----YKVQCK 179
Query: 575 QEQAMAAMICRRDNKEDCIGVQGLADLFIQM------------RLPFDCNE-----SRLL 617
+ + + + N + + ++ L L Q+ + + RLL
Sbjct: 180 MDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 618 ----------------NKQIFETIYYGALEASCEI--AARDGPYQTYEGSPVSQGI-LQY 658
N + + A SC+I R + + + I L +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 659 DMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYML------YKDACNRKSN 712
+TP + +L + L ++ T P L +D N
Sbjct: 294 HSMTLTPDE-----VKSLLLKYLDCR--PQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 713 QQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFFG-FKY 771
+ VN DK II + + L A ++ F
Sbjct: 347 ----------WKHVNC----------DKLTTIIESSLNVLEPAEYRKM---FDRLSVFPP 383
Query: 772 DMWGVTPTDLWD--WAALK----EKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTS 825
PT L W + + + SL+ + + T
Sbjct: 384 SAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---------------EKQPKESTI 426
Query: 826 NIYS-----RRVLSGEFQVVNHHLLRDLVELGL---WDDNMKDQL-----------IVNN 866
+I S + L E+ + H + D + DD + L + N
Sbjct: 427 SIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 867 GSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA--DRGAFIDQSQSLNIYMAEI-----N 919
+ + D + + QK D A G+ ++ Q L Y I
Sbjct: 485 EHPERMTLFRMVFLDFR---F-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 920 YAKMSS--MHF 928
Y ++ + + F
Sbjct: 541 YERLVNAILDF 551
Score = 56.8 bits (136), Expect = 3e-08
Identities = 74/568 (13%), Positives = 161/568 (28%), Gaps = 142/568 (25%)
Query: 16 IFDFLELKKNTGKEEF--RARDLFYGLWIPDEFMRRVESDAQWSLMCPNACRGLSDSWGE 73
+F L K+ ++F + Y ++ + + R + +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 74 KFDDLY----KKYEA--EGLVYFRPGAFAIYLEPWHGDIFDFLELKKNTGK--------E 119
F + Y + L+ RP + + G +GK
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKN-VLI---DGV--------LGSGKTWVALDVCL 172
Query: 120 EFRARDLFYG--LWIPDEFMRRVESDAQWSLMCPNTCRGLSDSWGEKFDDL----YKKYE 173
++ + W+ ++ S M + +W + D + +
Sbjct: 173 SYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 174 AEGKFIRQVPARKLWFA--ILDSQIETGTPYMLYKDACNRKSNQQNLGTIKCSNL-CTEI 230
+ + R + ++ +L + N K NL C +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLL-------------NVQNAK-------AWNAFNLSCKIL 269
Query: 231 VEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEA 290
+ T++ V + S A +I+ + T +V ++ K L+ P E
Sbjct: 270 L--TTRF-KQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLD--CRPQDLP-REV 322
Query: 291 RNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDG 350
+N P + + +A+ +D N + ++ I E+S +
Sbjct: 323 LTTN----PRRLSI--IAESIRDGLATWD-NWKHVNCDKLTTII-----ESSLNVLEPAE 370
Query: 351 PYQTYEGSPVSQGILQYDMWGVTPTDLWD--WAALK----EKIAKHGVRNSLLIAPMPTA 404
+ ++ + PT L W + + + SL+
Sbjct: 371 YRKMFD----RLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV------- 417
Query: 405 STAQILGNNESFEPYTSNIYS-----RRVLSGEFQVVNHHLLRDLVELGL---WDDNMKD 456
+ + T +I S + L E+ + H + D + DD +
Sbjct: 418 --------EKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPP 467
Query: 457 QL-----------IVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA--DRGAFIDQ 503
L + N + + D + + QK D A G+ ++
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---F-LEQKIRHDSTAWNASGSILNT 523
Query: 504 SQSLNIYMAEI-----NYAKMSS--MHF 524
Q L Y I Y ++ + + F
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 33.7 bits (76), Expect = 0.35
Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 59/195 (30%)
Query: 834 SGEFQVVNHHLLRDLVELGLWDDNMKD-----QLIVNNGSIQDIEGIPQKLKDLYKTVWE 888
+GE Q +L + + + + KD + I++ I I + + W
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 889 IPQKTVLDMAADRGAFIDQSQSLNIYMAEI---NYAKMSSMHFHGWKLGLKTGMYYLRTK 945
+ K Q + + ++ E+ NY + L + + + +
Sbjct: 71 LLSK--------------QEEMVQKFVEEVLRINY---------KF---LMSPIKTEQRQ 104
Query: 946 PAANAIQF--TIDKTKMANAMASKDTRSQEE-----IQADQE-----------------Q 981
P+ + D+ N + +K S+ + QA E
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 982 AMAAMICRRDNKEDC 996
+A +C K C
Sbjct: 165 WVALDVC-LSYKVQC 178
Score = 32.5 bits (73), Expect = 0.95
Identities = 35/309 (11%), Positives = 88/309 (28%), Gaps = 77/309 (24%)
Query: 695 ETGTPYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNS 754
ETG YKD + + ++ + + + ++S + + I+ + D ++
Sbjct: 10 ETGEHQYQYKDIL-----SVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSG 63
Query: 755 A-IIYDRDFNYNFFGFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQI 813
++ + + + V + + + L I R ++ M ++
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRIN-YKF--LMSPIKTE-QRQPSMMTRMYIEQRDRL 119
Query: 814 LGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIE 873
+N+ F Y N+ + + + LL + D + GS
Sbjct: 120 YNDNQVFAKY--NVSRLQ----PYLKLRQALLELRPAKNVLIDGVL-------GS----- 161
Query: 874 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 933
G KT + + + I+ W
Sbjct: 162 G-----------------KTWVALDVCLSYKVQCKMDFKIF----------------W-- 186
Query: 934 GLKTGMYYLRTKPAA-----NAIQFTIDKTKMANAMASKDTRSQEEIQADQEQAMAAMIC 988
L P + + ID + + S + + + + + ++
Sbjct: 187 -LNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLK 239
Query: 989 RRDNKEDCL 997
+ + +CL
Sbjct: 240 SKPYE-NCL 247
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.9 bits (142), Expect = 7e-09
Identities = 71/399 (17%), Positives = 121/399 (30%), Gaps = 136/399 (34%)
Query: 66 GLSDSWGEKFD---DLYKKYEA-------------EGLVYFRPGAFAIYLEPWHG-DIFD 108
G +D + F+ DLY+ Y L+ A ++ G +I +
Sbjct: 164 GNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILE 217
Query: 109 FLELKKNTGKEEFRARDLF----YGL--------------WIPDEFMRRVESDAQWSLMC 150
+LE NT +++ G+ + P E + + +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGH 273
Query: 151 PNTCRGL--------SDSWGEKFDDLYKKYEAEGKFI-----RQVPARKLWFAILDSQIE 197
+GL +DSW E F +K FI P L +IL+ +E
Sbjct: 274 ---SQGLVTAVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 198 T--GTP-YMLYKDACNRKSNQQNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN 254
G P ML + + + +Q + +N + + I+L +N
Sbjct: 330 NNEGVPSPML---SISNLTQEQVQDYVNKTN------SHLPAGKQ-----VEISL---VN 372
Query: 255 PADKTYNF-------------TKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHR--P 299
A N L+ + ++I P E R +R P
Sbjct: 373 GAK---NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI------PFSE-RKLKFSNRFLP 422
Query: 300 IGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARD--GP-YQTYE 356
+ PF S LL + I ++ + A+D P Y T++
Sbjct: 423 VA--------------SPF---HSHLL-VPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 357 GS---PVSQGILQ--YDMWGVTPTDLWDWAALKEKIAKH 390
GS +S I + D P W + A H
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPV---KWETTTQFKATH 500
Score = 55.8 bits (134), Expect = 8e-08
Identities = 108/656 (16%), Positives = 186/656 (28%), Gaps = 280/656 (42%)
Query: 360 VSQGILQYDMWGVTPTDLWDWAA--LKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFE 417
+S G L++ V PT + + A L+E+ K I P PT A E
Sbjct: 11 LSHGSLEHV-LLV-PTASF-FIASQLQEQFNK--------ILPEPTEGFAA------DDE 53
Query: 418 PYTSNIYSRRVLSGEF-QVVNHHL-------LRDLVELGLWDDNMKDQLIVNNGSIQDIE 469
P T+ L G+F V+ + ++ L L + + + N DI
Sbjct: 54 P-TTPA----ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE--NCYLEGN----DIH 102
Query: 470 GIPQKLKDLYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEINYAKMSSMHFHGWKL 529
+ + + + +++ L
Sbjct: 103 AL------------------AAKLLQENDTTLVKTKEL---------------------- 122
Query: 530 GLKTGMYYLRTKPAANAIQFTIDKTKMANAMASKDARSQ--EEIQADQEQAMAAMICRRD 587
+K Y A + A K + S + Q +A
Sbjct: 123 -IKN--YI-----TARIM---------AKRPFDKKSNSALFRAVGEGNAQLVAIF----- 160
Query: 588 NKEDCIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAAR-------- 639
G QG D + F+ E R +++T Y+ + + +A
Sbjct: 161 ------GGQGNTDDY------FE--ELR----DLYQT-YHVLVGDLIKFSAETLSELIRT 201
Query: 640 ----------------------DGPYQTYEGS-PVSQ---GILQ---Y----DMWGVTPT 666
+ P + Y S P+S G++Q Y + G TP
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 667 DLWD-----------------------WAALKVLALVYGLKLWFAI-LDSQIETG----T 698
+L W + V + + F I +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITVLFFIGVRCYEAYPNTSLP 320
Query: 699 PYMLYKDACNRKSNQQNLEVIEELYNMVNKETGTRTPM--ISDKHYEIIMKNADRLNSAI 756
P +L + +LE E G +PM IS+ E + ++ NS +
Sbjct: 321 PSIL----------EDSLENNE----------GVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 757 IYDRD-----FN--YNFFGFKYDMWGVT--PTDLWDWAALKEKIAKHGVRNSLLIAPMPT 807
+ N N V+ P L +G+ +L A P+
Sbjct: 361 PAGKQVEISLVNGAKNLV--------VSGPPQSL------------YGLNLTLRKAKAPS 400
Query: 808 ASTAQILGNNESFEPYTSNIYSRR--VLSGEFQVVN---H-HLLRDLVELGLWDDNMKDQ 861
G ++S P +S R S F V H HLL +L D +
Sbjct: 401 -------GLDQSRIP-----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 862 LI-----------VNNGS-IQDIEG-IPQKLKD--LYKTV-WEIPQKT----VLDM 897
+GS ++ + G I +++ D + V WE + +LD
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 52.7 bits (126), Expect = 7e-07
Identities = 46/304 (15%), Positives = 82/304 (26%), Gaps = 134/304 (44%)
Query: 646 YEGSPVSQGILQYDMWGVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKD 705
Y+ S +Q D+W+ A YG F+ILD I P L
Sbjct: 1636 YKTSKAAQ-------------DVWN-RADNHFKDTYG----FSILD--IVINNPVNLTIH 1675
Query: 706 ACNRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYN 765
K + I E Y+ + ET + ++K I K + +++
Sbjct: 1676 FGGEKGKR-----IRENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYT-------- 1718
Query: 766 FFGFKYDMWGVTPTDLWD----------------WAALKEK--------IAKHGVRNSL- 800
F L + LK K A H SL
Sbjct: 1719 FRS---------EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH----SLG 1765
Query: 801 ----LIAP---MPTASTAQIL----------------------------------GNNES 819
L + M S +++ + E+
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 820 FEPYTSNIYSRRVLSGEF-QVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQK 878
+ + R +G ++VN N+++Q V G ++ ++ +
Sbjct: 1826 LQYVVERVGKR---TGWLVEIVN--------------YNVENQQYVAAGDLRALDTVTNV 1868
Query: 879 LKDL 882
L +
Sbjct: 1869 LNFI 1872
Score = 50.8 bits (121), Expect = 2e-06
Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 115/281 (40%)
Query: 256 ADK----TYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLF 311
AD TY F+ + IV N + ++F G + + + +
Sbjct: 1649 ADNHFKDTYGFS----ILDIVINNPVNLT-IHFG---------------GEKGKRIRENY 1688
Query: 312 IQMRLPFD-CNESRLLNKQIFETIYYGALEASCEIAARDGP----YQTYEGSP----VSQ 362
M F+ + +L ++IF+ I E S R T P + +
Sbjct: 1689 SAMI--FETIVDGKLKTEKIFKEIN----EHSTSYTFR-SEKGLLSATQFTQPALTLMEK 1741
Query: 363 GILQYDM--WGVTPTDLWDWAALKEKIAKHGVRNSL-----LIAP---MPTASTAQIL-- 410
+ D+ G+ P D A A H SL L + M S +++
Sbjct: 1742 AAFE-DLKSKGLIPAD----ATF----AGH----SLGEYAALASLADVMSIESLVEVVFY 1788
Query: 411 --------------------------------GNNESFEPYTSNIYSRRVLSGEF-QVVN 437
+ E+ + + R +G ++VN
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR---TGWLVEIVN 1845
Query: 438 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDL 478
N+++Q V G ++ ++ + L +
Sbjct: 1846 --------------YNVENQQYVAAGDLRALDTVTNVLNFI 1872
Score = 47.7 bits (113), Expect = 2e-05
Identities = 71/416 (17%), Positives = 115/416 (27%), Gaps = 153/416 (36%)
Query: 156 GLSDSWGEKFD---DLYKKYEAE-GKFIRQVPARKLWFAILDSQIETGTPYMLYKDACN- 210
G +D + F+ DLY+ Y G I+ A L L + N
Sbjct: 164 GNTDDY---FEELRDLYQTYHVLVGDLIKFS-AETLSE--LIRTTLDAEKV--FTQGLNI 215
Query: 211 --------RKSNQQNLGTIKCSNLC-----TEIVEYTSKDEVAVCNLASIALNMYINPAD 257
++ L +I S C ++ Y V L P +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPIS--CPLIGVIQLAHY-----VVTAKLLG------FTPGE 262
Query: 258 KTYNFTKLKDVAK-IVT--------------KNLNKIIDVNF---------YPVEEARNS 293
++ +VT ++ K I V F YP S
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 294 NMRH-RPIGIG-------VQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGALEASCEI 345
+ G + L +Q + N KQ+ EI
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLPAGKQV-------------EI 368
Query: 346 AARDGPYQTYEGSPVSQGILQYDMWGVT--PTDLWDWAALKEKIAKHGVRNSLLIAPMPT 403
+ +G V V+ P L +G+ +L A P+
Sbjct: 369 SLVNGAKNL-----V-----------VSGPPQSL------------YGLNLTLRKAKAPS 400
Query: 404 ASTAQILGNNESFEPYTSNIYSRR--VLSGEFQVVN---H-HLLRDLVELGLWDDNMKDQ 457
G ++S P +S R S F V H HLL +L D +
Sbjct: 401 -------GLDQSRIP-----FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 458 LI-----------VNNGS-IQDIEG-IPQKLKD--LYKTV-WEIPQKT----VLDM 493
+GS ++ + G I +++ D + V WE + +LD
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 40.4 bits (94), Expect = 0.003
Identities = 56/315 (17%), Positives = 91/315 (28%), Gaps = 124/315 (39%)
Query: 470 GIPQKL---KDLYKT------VWEIPQKTVLDMAADRGAFIDQSQSLNIYMAEI--NYAK 518
G Q+ DLYKT VW AD + +I +I N
Sbjct: 1625 GS-QEQGMGMDLYKTSKAAQDVWN---------RADN--HFKDTYGFSI--LDIVINNPV 1670
Query: 519 MSSMHFHGWKLGLKTGMYYLRTKPAANAIQFTID---KTKMANAMASKDARSQEEI-QAD 574
++HF G K G + Y A+ F K K + S +++
Sbjct: 1671 NLTIHFGGEK-GKRIRENYS-------AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 575 QE--------Q-AMAAMICRRDNKEDCIGVQGLADLFIQMR----LPFDCNESRLLNKQI 621
+ Q A+ M A F ++ +P D
Sbjct: 1723 KGLLSATQFTQPALTLM--------------EKA-AFEDLKSKGLIPADA---------T 1758
Query: 622 F------ETIYYGAL---------EASCEI-AARDGPYQTYEGSPVSQGILQYDMWGVTP 665
F E Y AL E+ E+ R G G Y M + P
Sbjct: 1759 FAGHSLGE---YAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 666 TDL---WDWAALKVLALVYGLKLWFAILDSQIETGTPYML----YKDACNRKSNQQ---- 714
+ + AL+ + ++ T +++ Y N NQQ
Sbjct: 1815 GRVAASFSQEALQYVV-------------ERVGKRTGWLVEIVNY----N-VENQQYVAA 1856
Query: 715 -NLEVIEELYNMVNK 728
+L ++ + N++N
Sbjct: 1857 GDLRALDTVTNVLNF 1871
Score = 37.7 bits (87), Expect = 0.023
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 58/215 (26%)
Query: 561 ASKDARSQEEI--QADQ--EQAMAAMI--CRRDN-KEDCI---GVQG--LADLFIQMRLP 608
SK A+ ++ +AD + I +N I G +G + + + M
Sbjct: 1638 TSKAAQ---DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI-- 1692
Query: 609 FD-CNESRLLNKQIFETIYYGALEASCEIAARDGP----YQTYEGSP----VSQGILQYD 659
F+ + +L ++IF+ I E S R T P + + + D
Sbjct: 1693 FETIVDGKLKTEKIFKEIN----EHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFE-D 1746
Query: 660 M--WGVTPTD-------LWDWAALKVLA----------LVY--GLKLWFAILDSQIETGT 698
+ G+ P D L ++AAL LA +V+ G+ + A+ ++
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 699 PYMLYKDACN--RKSNQQNLEVIEELYNMVNKETG 731
M+ A N R + + E ++ + V K TG
Sbjct: 1807 YGMI---AINPGRVAASFSQEALQYVVERVGKRTG 1838
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 33.7 bits (76), Expect = 0.32
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 31/162 (19%)
Query: 52 SDAQWSLMCPNACR--GLSDSWGEKFDDL---YKKYEAEGLVYFRPGAFAIYLEPWHGDI 106
SD W+ CP+ CR GL D + F + K E + + ++
Sbjct: 37 SDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNK-DSHSLTTNIMEILR 95
Query: 107 FDFLELKKNTGK-----EEFRARDLFYGLWIPDEF----------------MRRVESDAQ 145
DF E+ R+R + ++ M+R+E D
Sbjct: 96 GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155
Query: 146 WSLMCPNTCRGLSDSWGEKFDDLYKKYEAEGKFIRQVPARKL 187
+ +CRG + DL K YE + K + QV A+ L
Sbjct: 156 IKI---RSCRGSCSRALAREVDL-KDYEDQQKQLEQVIAKDL 193
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.8 bits (71), Expect = 1.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 52 SDAQWSLMCPNACR--GLSDSWGEKFDDLYKK 81
SD W+ CP+ CR GL D + F K
Sbjct: 40 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINK 71
Score = 31.4 bits (70), Expect = 1.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 142 SDAQWSLMCPNTCR--GLSDSWGEKFDDLYKK 171
SD W+ CP+ CR GL D + F K
Sbjct: 40 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINK 71
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry,
coiled- coil, beta-sheet, blood clotting; 1.40A {Bos
taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Length = 53
Score = 28.5 bits (63), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 52 SDAQWSLMCPNACR--GLSDSWGEKFDDLYKK 81
SD W+ CP+ CR GL D + F K
Sbjct: 12 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINK 43
Score = 28.1 bits (62), Expect = 1.8
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 142 SDAQWSLMCPNTCR--GLSDSWGEKFDDLYKK 171
SD W+ CP+ CR GL D + F K
Sbjct: 12 SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINK 43
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 28.6 bits (63), Expect = 9.9
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 199 GTPYMLYKDACNRKSNQQ----NLGTIKCSNLCTEIVEYT--SKDEVAVCN 243
G L+ N NQ GTI+ + C YT + CN
Sbjct: 32 GNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYTAGVYVMIFDCN 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,669,794
Number of extensions: 960100
Number of successful extensions: 1786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1719
Number of HSP's successfully gapped: 61
Length of query: 998
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 895
Effective length of database: 3,825,930
Effective search space: 3424207350
Effective search space used: 3424207350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)