RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1689
(998 letters)
>d1rlra2 c.7.1.2 (A:222-748) R1 subunit of ribonucleotide reductase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 525
Score = 311 bits (796), Expect = 1e-95
Identities = 115/478 (24%), Positives = 188/478 (39%), Gaps = 53/478 (11%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 77 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 136
Query: 151 PNTCRGLSDSWGEKFDDLYKKYE----AEGKFIRQVPARKLWFAILDSQIETGTPYMLYK 206
P+ GL D++ ++ + Y + ++V A +L+ ++ + TG Y+
Sbjct: 137 PSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNV 196
Query: 207 DACNRKSNQ-QNLGTIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYIN-PADKTYNFTK 264
D CN S + ++ SNLC EI T IAL N +
Sbjct: 197 DHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDE 256
Query: 265 LKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESR 324
L ++A + + L+ ++D YP+ A+ M R +GIGV A + + +
Sbjct: 257 LDELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSAN 316
Query: 325 LLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDL------W 378
L + FE I Y L+AS E+A G + + ++GIL D + + +
Sbjct: 317 NLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHY 376
Query: 379 DWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNH 438
DW AL+E I HG+RNS L A MP+ +++QI EP + + G + V
Sbjct: 377 DWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVV- 435
Query: 439 HLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAADR 497
+ L D Y+ +WE+P L +
Sbjct: 436 -------------------------------PDYEHLHDAYELLWEMPGNDGYLQLVGIM 464
Query: 498 GAFIDQSQSLNIYMAEINYA-------KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 548
FIDQS S N + ++ +K G+KT +YY T+ + +
Sbjct: 465 QKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDDIDDLS 521
Score = 140 bits (352), Expect = 2e-35
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 41/179 (22%)
Query: 782 WDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVN 841
+DW AL+E I HG+RNS L A MP+ +++QI EP + + G + V
Sbjct: 376 YDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVV 435
Query: 842 HHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIP-QKTVLDMAAD 900
+ L D Y+ +WE+P L +
Sbjct: 436 --------------------------------PDYEHLHDAYELLWEMPGNDGYLQLVGI 463
Query: 901 RGAFIDQSQSLNIYMAEINYA-------KMSSMHFHGWKLGLKTGMYYLRTKPAANAIQ 952
FIDQS S N + ++ +K G+KT +YY T+ + +
Sbjct: 464 MQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKT-LYYQNTRDDIDDLS 521
Score = 83.4 bits (205), Expect = 4e-17
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA ++ WH ++ L LK N G E R R + YG+ I R+ +L
Sbjct: 77 RGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFS 136
Query: 61 PNACRGLSDSWGEKFDDLYKKYE 83
P+ GL D++ ++ + Y
Sbjct: 137 PSDVPGLYDAFFADQEEFERLYT 159
Score = 29.1 bits (64), Expect = 3.4
Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 3/162 (1%)
Query: 602 FIQMRLPFDCNESRLLNKQIFETIYYGALEASCEIAARDGPYQTYEGSPVSQGILQYDMW 661
+ ++ E + + + + + +
Sbjct: 95 LLVLKNN-RGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEE 153
Query: 662 GVTPTDLWDWAALKVLALVYGLKLWFAILDSQIETGTPYMLYKDACNRKSNQQNLEVIEE 721
++ V ++L+ ++ + TG Y+ D CN S
Sbjct: 154 FERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVR 213
Query: 722 LYNMVNKETGTRTPMIS--DKHYEIIMKNADRLNSAIIYDRD 761
N+ + P+ D++ EI + N I + D
Sbjct: 214 QSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLD 255
>d1peqa2 c.7.1.2 (A:175-699) R1 subunit of ribonucleotide reductase,
C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 525
Score = 247 bits (632), Expect = 1e-72
Identities = 94/485 (19%), Positives = 171/485 (35%), Gaps = 72/485 (14%)
Query: 91 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 150
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 77 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 136
Query: 151 PNTCRGLSDSWGEKF--DDLYKKYEAEGKFIRQ-VPARKLWFAILDSQIETGTPYMLYKD 207
P + + Y + A+ + + AR + + + Q E+G PY++++D
Sbjct: 137 PYDIQRRYGKPFGDIAISERYDELIADPHVRKTYINARDFFQTLAEIQFESGYPYIMFED 196
Query: 208 ACNRKS-------NQQNLGTIKCSNLCTEI---VEYTSKDEVAVCNLASIALNMYINPAD 257
NR + I N + ++YT CNL S+ + ++ D
Sbjct: 197 TVNRANPIAGRINMSNLCSEILQVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPD 256
Query: 258 KTYNFTKLKDVAKIVTKNLNKIIDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLP 317
V + V N IG+G L + +
Sbjct: 257 IGRTVETAIRGLTAV------SDMSHIRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIA 310
Query: 318 FDCNESRLLNKQIFETIYYGALEASCEIAARDGP-YQTYEGSPVSQGIL----------- 365
+ E+ F TI + A+ S +A G + + S + G
Sbjct: 311 YGSPEALDFTNLYFYTITWHAVHTSMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQP 370
Query: 366 -------QYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEP 418
+ G+T W L++ + ++G+ N L A PT S + I S P
Sbjct: 371 KTAKVRALFARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHP 430
Query: 419 YTSNIYSRRV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKD 477
+ I R+ +G + + D
Sbjct: 431 IVAKIEIRKEGKTGRVYYPAPFM-------------------------------TNENLD 459
Query: 478 LYKTVWEIPQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMY 536
+Y+ ++I + ++D A+ +DQ SL ++ ++ + W+ G+K+ +Y
Sbjct: 460 MYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LY 518
Query: 537 YLRTK 541
Y+R +
Sbjct: 519 YIRLR 523
Score = 132 bits (331), Expect = 9e-33
Identities = 32/177 (18%), Positives = 66/177 (37%), Gaps = 34/177 (19%)
Query: 771 YDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPMPTASTAQILGNNESFEPYTSNIYSR 830
+ G+T W L++ + ++G+ N L A PT S + I S P + I R
Sbjct: 379 FARSGITLPTREMWLKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIR 438
Query: 831 RV-LSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEI 889
+ +G + + D+Y+ ++I
Sbjct: 439 KEGKTGRVYYPAPFM-------------------------------TNENLDMYQDAYDI 467
Query: 890 PQKTVLDMAADRGAFIDQSQSLNIYM-AEINYAKMSSMHFHGWKLGLKTGMYYLRTK 945
+ ++D A+ +DQ SL ++ ++ + W+ G+K+ +YY+R +
Sbjct: 468 GPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKS-LYYIRLR 523
Score = 76.2 bits (186), Expect = 7e-15
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 1 RPGAFAIYLEPWHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMC 60
R GA A+YL H DI FL+ K+ E+ R + L G+ IPD R + +AQ +L
Sbjct: 77 RQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDITFRLAKENAQMALFS 136
Query: 61 PNACRGLSDSWGEKF--DDLYKKYEAEGLVY 89
P + + Y + A+ V
Sbjct: 137 PYDIQRRYGKPFGDIAISERYDELIADPHVR 167
>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
reductase {Lactobacillus leichmannii [TaxId: 28039]}
Length = 721
Score = 120 bits (300), Expect = 2e-28
Identities = 52/416 (12%), Positives = 96/416 (23%), Gaps = 61/416 (14%)
Query: 102 WHGDIFDFLELKKNTGKEEFRARDLFYGLWIPDEFMRRVESDAQWSLMCPNTCRGLSDSW 161
D D L R L D+ Q LM S +
Sbjct: 294 TAVDAADICNLIGKAVVAGNVRRSAELALGSNDDQDFISMKQDQEKLMHHRWASNNSVAV 353
Query: 162 GEKFDDLYKKYEAEGKFIRQVPARKLWFAILDSQIETGTPYMLYKDACNRKS--NQQNLG 219
F + I E G P ++ D
Sbjct: 354 DSAFSG--------------------YQPIAAGIRENGEPGIVNLDLSKNYGRIVDGYQA 393
Query: 220 TIKCSNLCTEIVEYTSKDEVAVCNLASIALNMYINPADKTYNFTKLKDVAKIVTKNLNKI 279
I T S CNL + + + K
Sbjct: 394 GIDGDVEGTNPCGEISLANGEPCNLFEVFPLIA-------EEQGWDLQEVFALAARYAKR 446
Query: 280 IDVNFYPVEEARNSNMRHRPIGIGVQGLADLFIQMRLPFDCNESRLLNKQIFETIYYGAL 339
+ + Y E +R ++R IGI + G+ D + +
Sbjct: 447 VTFSPYDWEISREIIQKNRRIGISMSGIQDWLLTRLGNRVVTG-------FKDDFDPETH 499
Query: 340 EASCEIAARDGPYQTYEGSPVSQGILQYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIA 399
EA + + ++ D++ G S+
Sbjct: 500 EAIKVPVYDKRAIKMVD-----------QLYKAVVKADQDYSK------TLGCNESIKHT 542
Query: 400 PM-PTASTAQILGNNESFEPYTSNIYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQL 458
+ P+ + A++ G +E + +R+ + + LL L G + D
Sbjct: 543 TVKPSGTVAKLAGASEGMHFHYGAYLIQRIRFQD----SDPLLPALKACGYRTE--ADIY 596
Query: 459 IVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAADRGAF-IDQSQSLNIYMAE 513
N ++ + + + A + D + S I +
Sbjct: 597 TENTTCVEFPIKAVGADNPNFASAGTVSIAEQFATQAFLQTYWSDNAVSCTITFQD 652
Score = 72.3 bits (176), Expect = 2e-13
Identities = 23/212 (10%), Positives = 57/212 (26%), Gaps = 18/212 (8%)
Query: 708 NRKSNQQNLEVIEELYNMVNKETGTRTPMISDKHYEIIMKNADRLNSAIIYDRDFNYNFF 767
+R+ Q+N + + + + + + +YD+
Sbjct: 457 SREIIQKNRRIGISMSGIQDWLLTRLGNRVVTGFKDDFDPETHEAIKVPVYDKRAIKMVD 516
Query: 768 GFKYDMWGVTPTDLWDWAALKEKIAKHGVRNSLLIAPM-PTASTAQILGNNESFEPYTSN 826
A ++ G S+ + P+ + A++ G +E +
Sbjct: 517 QLYK----------AVVKADQDYSKTLGCNESIKHTTVKPSGTVAKLAGASEGMHFHYGA 566
Query: 827 IYSRRVLSGEFQVVNHHLLRDLVELGLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTV 886
+R+ + + LL L G + D N ++ + +
Sbjct: 567 YLIQRIRFQD----SDPLLPALKACGYRTE--ADIYTENTTCVEFPIKAVGADNPNFASA 620
Query: 887 WEIPQKTVLDMAADRGAF-IDQSQSLNIYMAE 917
+ A + D + S I +
Sbjct: 621 GTVSIAEQFATQAFLQTYWSDNAVSCTITFQD 652
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 27.9 bits (62), Expect = 2.7
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 254 NPADKTYNFTKLKDVAKIVTKNLNKIIDVN---------FYPVEEARNSNMRHRPIGIGV 304
+P ++ KLK + K V K +++ ++N F P + + + V
Sbjct: 3 SPQEEV-ELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEA---LCKLDRRV 58
Query: 305 QGLADLFIQ-------MRLPFDCNESRLLNKQIFETI 334
+ + F++ + LP + +SRL K + + +
Sbjct: 59 KATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKV 95
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Length = 91
Score = 26.3 bits (58), Expect = 6.8
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 438 HHLLRDLVEL--GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 495
+ D+V L W + + N S+ E + +DL + P D
Sbjct: 5 SEFMGDIVALVDKRWAGIHDIEHLANAFSLPTPEIKVRFYQDLKRMFRLFPLGVFSDE-E 63
Query: 496 DRGAFIDQSQ 505
R + Q
Sbjct: 64 QRQNLLQMCQ 73
Score = 26.3 bits (58), Expect = 6.8
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 842 HHLLRDLVEL--GLWDDNMKDQLIVNNGSIQDIEGIPQKLKDLYKTVWEIPQKTVLDMAA 899
+ D+V L W + + N S+ E + +DL + P D
Sbjct: 5 SEFMGDIVALVDKRWAGIHDIEHLANAFSLPTPEIKVRFYQDLKRMFRLFPLGVFSDE-E 63
Query: 900 DRGAFIDQSQ 909
R + Q
Sbjct: 64 QRQNLLQMCQ 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,848,056
Number of extensions: 185600
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 28
Length of query: 998
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 904
Effective length of database: 1,116,976
Effective search space: 1009746304
Effective search space used: 1009746304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)