BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16895
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 189 bits (481), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 189 bits (480), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 184 bits (468), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 184 bits (467), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 184 bits (467), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 182 bits (462), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 182 bits (462), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 182 bits (461), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 182 bits (461), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 103
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 104 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 182 bits (461), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDI+LARRIRGERA
Sbjct: 61 LFEDTNLCAIHAKRVTIMPKDIELARRIRGERA 93
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 181 bits (460), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 181 bits (459), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/93 (95%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 24 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 83
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 84 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 116
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 180 bits (457), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAK VTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKHVTIMPKDIQLARRIRGERA 135
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMP+DIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPQDIQLARRIRGERA 139
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHA+RVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAQRVTIMPKDIQLARRIRGERA 139
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF+TDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIR+LPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA EAYLVG
Sbjct: 47 PGTVALREIRRYQQSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVAIMPKDIQLARRIRGERA 135
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 180 bits (457), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVIIMPKDIQLARRIRGERA 135
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVHIMPKDIQLARRIRGERA 135
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAK VTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKAVTIMPKDIQLARRIRGERA 135
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 179 bits (455), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRV IMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCAIHAKRVHIMPKDIQLARRIRGERA 135
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 179 bits (455), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEA+EA+LV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLC IHAKRVTI PKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCTIHAKRVTIFPKDIQLARRIRGERA 135
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 179 bits (453), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/93 (94%), Positives = 91/93 (97%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV
Sbjct: 6 PGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVA 65
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 66 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 98
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 178 bits (451), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 90/93 (96%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFKTDLRFQS+A+ ALQEA E+YLVG
Sbjct: 47 PGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVG 106
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLC IHAKRVTIMPKDIQLARRIRGERA
Sbjct: 107 LFEDTNLCVIHAKRVTIMPKDIQLARRIRGERA 139
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 176 bits (447), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/93 (93%), Positives = 89/93 (95%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF TDLRFQS+A+ ALQEASEAYLV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNL AIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 103 LFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA 135
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/93 (92%), Positives = 89/93 (95%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREI QDFKTDLR+QSAAIGALQEA+EA+LV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLC IHAKRVTI PKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCTIHAKRVTIFPKDIQLARRIRGERA 135
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/93 (93%), Positives = 89/93 (95%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAI ALQEA+EA+LV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLC IHAKRVTI PKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCTIHAKRVTIFPKDIQLARRIRGERA 135
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 166 bits (421), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/93 (87%), Positives = 88/93 (94%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRR+QKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQE+ EAYLV
Sbjct: 43 PGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVS 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNL AIHAKRVTI K+I+LARR+RGER+
Sbjct: 103 LFEDTNLAAIHAKRVTIQKKEIKLARRLRGERS 135
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/93 (93%), Positives = 89/93 (95%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAI ALQEA+EA+LV
Sbjct: 43 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVA 102
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLC IHAKRVTI PKDIQLARRIRGERA
Sbjct: 103 LFEDTNLCTIHAKRVTIFPKDIQLARRIRGERA 135
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones
H3 And H4
Length = 77
Score = 146 bits (368), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/75 (94%), Positives = 73/75 (97%)
Query: 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 79 PKDIQLARRIRGERA 93
PKDIQLARRIRGERA
Sbjct: 63 PKDIQLARRIRGERA 77
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 145 bits (367), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/75 (94%), Positives = 73/75 (97%)
Query: 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 79 PKDIQLARRIRGERA 93
PKDIQLARRIRGERA
Sbjct: 62 PKDIQLARRIRGERA 76
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 74/90 (82%), Gaps = 3/90 (3%)
Query: 5 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSAAIGALQEASEAYLVGL 61
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS AI ALQEASEAYLVGL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 62 FEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91
E TNL A+HAKR+TIM KD+QLARRIRG+
Sbjct: 61 LEHTNLLALHAKRITIMRKDMQLARRIRGQ 90
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 74/92 (80%), Gaps = 3/92 (3%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSAAIGALQEASEAY 57
P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS AI ALQEASEAY
Sbjct: 9 PTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAY 68
Query: 58 LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89
LVGL E TNL A+HAKR+TIM KD+QLARRIR
Sbjct: 69 LVGLLEHTNLLALHAKRITIMRKDMQLARRIR 100
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%), Gaps = 3/78 (3%)
Query: 17 ELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAK 73
+LLI K+PF RLV+E+ +F T DLR+QS AI ALQEASEAYLVGL E TNL A+HAK
Sbjct: 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAK 68
Query: 74 RVTIMPKDIQLARRIRGE 91
R+TIM KD+QLARRIRG+
Sbjct: 69 RITIMKKDMQLARRIRGQ 86
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 6 LREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFE 63
L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFE
Sbjct: 51 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 110
Query: 64 DTNLCAIHAKRVTIMPKDIQLARRIRG 90
D L +HA RVT+ PKD+QLARRIRG
Sbjct: 111 DAYLLTLHAGRVTLFPKDVQLARRIRG 137
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 105 bits (263), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 6 LREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFE 63
L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFE
Sbjct: 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 107
Query: 64 DTNLCAIHAKRVTIMPKDIQLARRIRG 90
D L +HA RVT+ PKD+QLARRIRG
Sbjct: 108 DAYLLTLHAGRVTLFPKDVQLARRIRG 134
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 65/87 (74%), Gaps = 2/87 (2%)
Query: 6 LREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFE 63
L+EIR+ QKST LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFE
Sbjct: 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFE 123
Query: 64 DTNLCAIHAKRVTIMPKDIQLARRIRG 90
D L +HA RVT+ PKD+QLARRIRG
Sbjct: 124 DAYLLTLHAGRVTLFPKDVQLARRIRG 150
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 55/75 (73%), Gaps = 2/75 (2%)
Query: 18 LLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 75
LLIRKLPF RL REI F D +Q+ A+ ALQEA+EA+LV LFED L +HA RV
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 76 TIMPKDIQLARRIRG 90
T+ PKD+QLARRIRG
Sbjct: 62 TLFPKDVQLARRIRG 76
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The
Partially Unfolded Dimer Of The Centromere-specific
Cse4/h4 Histone Variant
Length = 121
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 52/75 (69%), Gaps = 11/75 (14%)
Query: 19 LIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 75
LI K+PF RLV+E+ +F T DLR+QS AI ALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH---- 56
Query: 76 TIMPKDIQLARRIRG 90
++P+ ++RI G
Sbjct: 57 -LVPRG---SKRISG 67
>pdb|2IIJ|B Chain B, Structure Of Human Asf1a In Complex With Histone H3
Length = 18
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 78 MPKDIQLARRIRGERA 93
M KDIQLARRIRGERA
Sbjct: 3 MGKDIQLARRIRGERA 18
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 8 EIRRYQKSTELLIRKLPFQRLVREIAQDFKT 38
++ + Q ++++L+R +PFQ REI + F T
Sbjct: 8 QVPKKQTTSKILVRNIPFQANQREIRELFST 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,172,067
Number of Sequences: 62578
Number of extensions: 64668
Number of successful extensions: 243
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 50
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)