Query psy16895
Match_columns 93
No_of_seqs 109 out of 589
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:27:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yfv_A Histone H3-like centrom 100.0 2E-48 6.8E-53 257.2 6.3 89 1-89 9-100 (100)
2 1tzy_C Histone H3; histone-fol 100.0 6.5E-48 2.2E-52 266.4 6.6 93 1-93 44-136 (136)
3 3nqu_A Histone H3-like centrom 100.0 1.6E-45 5.3E-50 255.4 7.2 90 1-92 45-136 (140)
4 3r45_A Histone H3-like centrom 100.0 2.7E-45 9.3E-50 257.6 6.3 90 1-92 61-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 1.1E-39 3.6E-44 206.8 7.0 77 17-93 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 4.9E-39 1.7E-43 205.8 6.9 75 18-92 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 4.2E-35 1.4E-39 216.8 7.0 79 14-92 6-87 (235)
8 2ly8_A Budding yeast chaperone 100.0 7.5E-29 2.6E-33 168.3 7.4 73 19-91 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.9 1.6E-22 5.4E-27 123.7 5.0 63 20-87 3-65 (68)
10 1ku5_A HPHA, archaeal histon; 99.8 9.1E-21 3.1E-25 116.7 5.2 64 19-87 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.7 7.9E-18 2.7E-22 108.4 6.2 74 14-90 3-76 (93)
12 1id3_B Histone H4; nucleosome 99.5 1.9E-14 6.5E-19 94.6 5.7 77 10-91 19-95 (102)
13 2hue_C Histone H4; mini beta s 99.5 1.1E-14 3.9E-19 92.4 4.2 73 14-91 5-77 (84)
14 2yfw_B Histone H4, H4; cell cy 99.5 4E-14 1.4E-18 93.0 5.2 76 11-91 21-96 (103)
15 1tzy_D Histone H4-VI; histone- 99.5 4.8E-14 1.7E-18 92.5 5.6 76 11-91 21-96 (103)
16 3b0c_T CENP-T, centromere prot 99.4 2.3E-13 8E-18 90.5 6.7 70 17-91 5-74 (111)
17 1f1e_A Histone fold protein; a 99.4 1.7E-13 5.8E-18 96.0 5.7 71 14-89 77-147 (154)
18 1taf_B TFIID TBP associated fa 99.4 5.1E-13 1.7E-17 82.8 5.4 64 19-87 6-69 (70)
19 1f1e_A Histone fold protein; a 99.3 9.9E-13 3.4E-17 92.1 4.9 67 20-90 5-71 (154)
20 1taf_A TFIID TBP associated fa 99.3 3E-12 1E-16 78.9 6.4 62 24-90 6-67 (68)
21 3b0c_W CENP-W, centromere prot 99.3 4.9E-12 1.7E-16 78.7 5.7 66 19-88 4-69 (76)
22 4dra_A Centromere protein S; D 99.2 1.1E-11 3.7E-16 83.0 5.1 62 24-87 32-93 (113)
23 3b0b_B CENP-S, centromere prot 99.2 3.1E-11 1.1E-15 80.1 5.3 63 24-88 24-86 (107)
24 3v9r_A MHF1, uncharacterized p 99.2 4.4E-11 1.5E-15 77.2 5.6 64 24-87 13-78 (90)
25 1jfi_B DR1 protein, transcript 99.1 1.5E-10 5.1E-15 82.7 6.8 74 13-90 9-82 (179)
26 2byk_B Chrac-14; nucleosome sl 99.1 2.7E-10 9.3E-15 77.3 7.3 72 16-90 6-77 (128)
27 3vh5_A CENP-S; histone fold, c 99.0 3.7E-10 1.3E-14 78.0 5.7 62 25-88 25-86 (140)
28 1n1j_B NF-YC; histone-like PAI 98.9 1.2E-09 4E-14 70.7 3.9 79 5-87 3-83 (97)
29 2l5a_A Histone H3-like centrom 98.7 4.8E-09 1.6E-13 77.6 2.5 54 38-91 175-228 (235)
30 4g92_C HAPE; transcription fac 98.7 4.2E-08 1.4E-12 65.6 6.3 67 20-87 39-105 (119)
31 2f8n_G Core histone macro-H2A. 98.6 8.4E-08 2.9E-12 64.5 6.0 68 16-87 19-86 (120)
32 2nqb_C Histone H2A; nucleosome 98.6 1E-07 3.4E-12 64.3 5.5 68 16-87 20-87 (123)
33 1tzy_A Histone H2A-IV; histone 98.5 1.4E-07 4.9E-12 64.0 5.5 68 16-87 22-89 (129)
34 1jfi_A Transcription regulator 98.5 4.2E-08 1.4E-12 63.5 2.3 69 15-87 7-75 (98)
35 2f8n_K Histone H2A type 1; nuc 98.5 1.7E-07 5.7E-12 65.2 5.0 68 16-87 41-108 (149)
36 1id3_C Histone H2A.1; nucleoso 98.4 1.9E-07 6.5E-12 63.6 4.3 68 16-87 22-89 (131)
37 1f66_C Histone H2A.Z; nucleoso 98.4 2.8E-07 9.5E-12 62.5 4.9 67 16-87 24-92 (128)
38 2nqb_D Histone H2B; nucleosome 98.3 1.8E-06 6.1E-11 58.4 7.1 68 22-89 32-99 (123)
39 1tzy_B Histone H2B; histone-fo 98.3 2E-06 7E-11 58.3 7.0 69 21-89 34-102 (126)
40 2jss_A Chimera of histone H2B. 98.3 7.1E-07 2.4E-11 63.8 4.7 67 17-87 103-170 (192)
41 1h3o_B Transcription initiatio 98.3 2.6E-06 9E-11 53.2 6.4 66 18-87 4-69 (76)
42 2byk_A Chrac-16; nucleosome sl 98.1 3.1E-06 1.1E-10 58.1 4.2 64 23-87 20-84 (140)
43 2jss_A Chimera of histone H2B. 98.0 2E-05 6.9E-10 56.2 7.3 67 23-89 3-69 (192)
44 4dra_E Centromere protein X; D 90.7 0.67 2.3E-05 29.0 5.4 65 17-84 10-75 (84)
45 1r4v_A Hypothetical protein AQ 88.0 0.33 1.1E-05 34.1 2.8 75 10-89 15-91 (171)
46 3b0b_C CENP-X, centromere prot 87.8 1.7 5.8E-05 26.8 5.7 64 18-84 7-71 (81)
47 2ly8_A Budding yeast chaperone 85.4 0.71 2.4E-05 30.7 3.1 30 38-67 61-90 (121)
48 3ksy_A SOS-1, SON of sevenless 84.7 1.9 6.6E-05 36.9 6.3 66 17-87 102-167 (1049)
49 1wwi_A Hypothetical protein TT 83.9 0.85 2.9E-05 31.4 3.1 66 19-89 2-67 (148)
50 1h3o_A Transcription initiatio 77.0 3.5 0.00012 25.2 3.9 53 19-72 2-54 (75)
51 3uk6_A RUVB-like 2; hexameric 72.3 20 0.00067 25.6 7.6 51 38-88 275-329 (368)
52 3k1j_A LON protease, ATP-depen 69.8 19 0.00066 28.4 7.6 63 26-88 296-374 (604)
53 1g8p_A Magnesium-chelatase 38 68.9 15 0.00052 25.9 6.3 51 38-88 264-321 (350)
54 3v9r_B MHF2, uncharacterized p 56.8 7.7 0.00026 24.4 2.5 61 20-87 2-74 (88)
55 2v1u_A Cell division control p 49.5 53 0.0018 23.0 6.3 49 39-87 220-274 (387)
56 2eqb_B RAB guanine nucleotide 48.9 18 0.00063 23.0 3.3 32 45-76 47-78 (97)
57 3kw6_A 26S protease regulatory 48.4 16 0.00056 20.9 2.9 31 57-87 41-71 (78)
58 3qb5_K Translin-associated pro 40.0 39 0.0013 24.9 4.4 25 39-63 113-137 (290)
59 2dzn_B 26S protease regulatory 39.7 26 0.0009 20.3 2.9 30 58-87 37-66 (82)
60 3szr_A Interferon-induced GTP- 39.3 46 0.0016 26.5 5.1 52 6-64 405-461 (608)
61 3vlf_B 26S protease regulatory 38.3 28 0.00096 20.6 2.9 31 57-87 39-69 (88)
62 2qby_A CDC6 homolog 1, cell di 37.0 1E+02 0.0036 21.4 7.3 48 39-86 216-269 (386)
63 2e7s_A RAB guanine nucleotide 36.6 30 0.001 23.1 3.1 32 46-77 68-99 (135)
64 3aji_B S6C, proteasome (prosom 36.2 32 0.0011 19.7 2.9 31 57-87 39-69 (83)
65 2c9o_A RUVB-like 1; hexameric 35.7 48 0.0016 25.0 4.4 50 39-88 383-436 (456)
66 3bos_A Putative DNA replicatio 34.3 82 0.0028 20.3 5.0 47 39-86 191-240 (242)
67 2kru_A Light-independent proto 32.8 38 0.0013 19.8 2.7 50 39-89 3-53 (63)
68 2krk_A 26S protease regulatory 32.2 40 0.0014 20.0 2.9 30 58-87 50-79 (86)
69 2ocy_A RAB guanine nucleotide 29.1 42 0.0014 22.9 2.8 33 45-77 79-111 (154)
70 1ixz_A ATP-dependent metallopr 29.0 38 0.0013 22.9 2.6 46 40-85 202-252 (254)
71 2chg_A Replication factor C sm 28.9 1.1E+02 0.0037 19.1 5.3 47 39-87 178-224 (226)
72 3ts9_A Interferon-induced heli 27.4 56 0.0019 21.9 3.2 16 22-37 7-22 (138)
73 3axj_B TRAX, translin associat 27.4 1.1E+02 0.0038 22.5 5.1 31 32-62 101-133 (298)
74 1njg_A DNA polymerase III subu 27.0 89 0.003 19.7 4.1 47 39-86 202-248 (250)
75 2l09_A ASR4154 protein; proto- 25.2 46 0.0016 19.4 2.1 21 68-88 31-51 (62)
76 2dsy_A Hypothetical protein TT 24.4 81 0.0028 18.7 3.3 22 44-65 47-68 (87)
77 2qby_B CDC6 homolog 3, cell di 23.6 1.9E+02 0.0066 20.2 6.5 47 39-87 216-268 (384)
78 1jr3_D DNA polymerase III, del 23.5 1.1E+02 0.0037 21.7 4.4 61 25-87 147-207 (343)
79 3nbx_X ATPase RAVA; AAA+ ATPas 23.5 1.7E+02 0.0058 22.8 5.8 28 58-85 255-282 (500)
80 3axj_A GM27569P, translin; tra 23.0 1.2E+02 0.0043 21.6 4.6 34 29-62 87-122 (249)
81 1lv7_A FTSH; alpha/beta domain 21.8 75 0.0026 21.4 3.1 31 57-87 220-250 (257)
82 1bh9_B TAFII28; histone fold, 21.3 1.5E+02 0.0051 18.1 6.7 63 20-87 17-80 (89)
83 1sxj_D Activator 1 41 kDa subu 20.4 86 0.0029 21.8 3.2 49 38-86 208-260 (353)
No 1
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=2e-48 Score=257.25 Aligned_cols=89 Identities=69% Similarity=1.009 Sum_probs=67.0
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCcccc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 77 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl 77 (93)
|||++|+|||+||+||++||||+||+||||||++++++ ++|||++|+.+|||++|+|||++|||||+||+|||||||
T Consensus 9 pgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi 88 (100)
T 2yfv_A 9 PTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITI 88 (100)
T ss_dssp -------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 89999999999999999999999999999999999976 899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHh
Q psy16895 78 MPKDIQLARRIR 89 (93)
Q Consensus 78 ~~~Di~La~~ir 89 (93)
|++||+||.+||
T Consensus 89 ~~kDiqLa~rir 100 (100)
T 2yfv_A 89 MRKDMQLARRIR 100 (100)
T ss_dssp CHHHHHHHHHCC
T ss_pred CHHHHHHHHHhC
Confidence 999999999986
No 2
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=6.5e-48 Score=266.44 Aligned_cols=93 Identities=97% Similarity=1.338 Sum_probs=91.4
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcc
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 80 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~ 80 (93)
||+++|+|||+||+||++|||++||+||||||++++++++|||++|+.+|||++|+|||+||||+|+||+||||||||++
T Consensus 44 pgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~k 123 (136)
T 1tzy_C 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 123 (136)
T ss_dssp HHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcccC
Q psy16895 81 DIQLARRIRGERA 93 (93)
Q Consensus 81 Di~La~~irg~~~ 93 (93)
||+||.+|||+++
T Consensus 124 DiqLa~rirg~~~ 136 (136)
T 1tzy_C 124 DIQLARRIRGERA 136 (136)
T ss_dssp HHHHHHHHHTCCC
T ss_pred hHHHHHHHhCcCC
Confidence 9999999999864
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=1.6e-45 Score=255.38 Aligned_cols=90 Identities=62% Similarity=0.914 Sum_probs=72.8
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccC
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~ 78 (93)
||+ |+|||+||+||+|||||+||+||||||+++++ .++|||++|+.+|||++|+|||+||||||+||+||||||||
T Consensus 45 pg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm 122 (140)
T 3nqu_A 45 QGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122 (140)
T ss_dssp ----------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred Ccc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 676 99999999999999999999999999999997 58999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhccc
Q psy16895 79 PKDIQLARRIRGER 92 (93)
Q Consensus 79 ~~Di~La~~irg~~ 92 (93)
++||+||.+|||+.
T Consensus 123 ~kDiqLArrirg~~ 136 (140)
T 3nqu_A 123 PKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcccc
Confidence 99999999999974
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.7e-45 Score=257.56 Aligned_cols=90 Identities=62% Similarity=0.914 Sum_probs=74.0
Q ss_pred CccchhhhhhhhhcchhhhcccccHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccC
Q psy16895 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIM 78 (93)
Q Consensus 1 pg~~~lrEIr~~Q~st~llIpk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~ 78 (93)
||+ |+|||+||+||+|||||+||+||||||+++++ .++|||++|+.+|||++|+|||.||||||+||+||||||||
T Consensus 61 pg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm 138 (156)
T 3r45_A 61 QGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 138 (156)
T ss_dssp ----------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEC
T ss_pred Cch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 677 99999999999999999999999999999997 58999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHhccc
Q psy16895 79 PKDIQLARRIRGER 92 (93)
Q Consensus 79 ~~Di~La~~irg~~ 92 (93)
++||+||.+|||+.
T Consensus 139 ~kDIqLArrIrg~~ 152 (156)
T 3r45_A 139 PKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccc
Confidence 99999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=1.1e-39 Score=206.80 Aligned_cols=77 Identities=92% Similarity=1.255 Sum_probs=73.9
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcccC
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~~~ 93 (93)
.++|||+||+||||||++++++++|||++|+.+|||++|+|++++|||+|+||+||||||||++||+||.+|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999864
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=205.81 Aligned_cols=75 Identities=63% Similarity=0.939 Sum_probs=71.4
Q ss_pred hhcccccHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhccc
Q psy16895 18 LLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 92 (93)
Q Consensus 18 llIpk~pF~Rlvrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~~ 92 (93)
+||||+||+||||||.++++ .++|||++|+.+|||++|+|+|++|||||+||+||||||||++||+||++|||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 68999999999999999997 5899999999999999999999999999999999999999999999999999975
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-35 Score=216.84 Aligned_cols=79 Identities=68% Similarity=0.989 Sum_probs=72.2
Q ss_pred cchhhhcccccHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
....+||||+||+||||||++++++ ++|||++|+.|||||+|+|||+||||+|+||+||||||||++||+||++|||
T Consensus 6 ~~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 6 HHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp -----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4457999999999999999999976 8999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy16895 91 ER 92 (93)
Q Consensus 91 ~~ 92 (93)
+.
T Consensus 86 ~~ 87 (235)
T 2l5a_A 86 QF 87 (235)
T ss_dssp SC
T ss_pred cc
Confidence 75
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.5e-29 Score=168.28 Aligned_cols=73 Identities=60% Similarity=0.867 Sum_probs=69.3
Q ss_pred hcccccHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhh------------------------
Q psy16895 19 LIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH------------------------ 71 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H------------------------ 71 (93)
||||+||+||||||++++++ ++|||++|+.+|||++|+|||++|||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999976 899999999999999999999999999999875
Q ss_pred --------------cCccccCcccHHHHHHHhcc
Q psy16895 72 --------------AKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 72 --------------akR~Tl~~~Di~La~~irg~ 91 (93)
|+|+||++.|+.++.+-.|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 58999999999999999885
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.86 E-value=1.6e-22 Score=123.66 Aligned_cols=63 Identities=29% Similarity=0.305 Sum_probs=61.3
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
||++||+|++|++ ++.||+.+|+.+||+++|.|++.+|++|+.||.|+||+||+++||+++.+
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 7999999999999 78999999999999999999999999999999999999999999999975
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.82 E-value=9.1e-21 Score=116.69 Aligned_cols=64 Identities=30% Similarity=0.346 Sum_probs=61.7
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-||++||.||+|+. +..||+++|..+||+++|.|+..+++||+.+|.||||+||+++|++++.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999998 89999999999999999999999999999999999999999999999974
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.72 E-value=7.9e-18 Score=108.44 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=64.9
Q ss_pred cchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+++++.||++|+.|++|+... +..||+.+|..+||+++|.|+..++++|+.+|.|+||+||+++|+..|.+--|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 467889999999999999932 46899999999999999999999999999999999999999999999987443
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.51 E-value=1.9e-14 Score=94.59 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=67.9
Q ss_pred hhhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 10 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 10 r~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
|+-.+....-||++|..||.|.. +..|++++|.++|+++.|.|+..+.++|+.+|.|++|+||+++|+.+|++-.
T Consensus 19 ~k~~r~~i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 19 RKILRDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -----CCGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34445556669999999999998 8899999999999999999999999999999999999999999999999987
Q ss_pred cc
Q psy16895 90 GE 91 (93)
Q Consensus 90 g~ 91 (93)
|+
T Consensus 94 g~ 95 (102)
T 1id3_B 94 GR 95 (102)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.50 E-value=1.1e-14 Score=92.42 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=67.3
Q ss_pred cchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
+....-||++|..||.|.. +..|++++|.++|++..|.|+..+.++|+.+|.|+||+||+++|+.+|.+-.|+
T Consensus 5 r~~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 5 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp GGGCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred cccCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3444559999999999988 889999999999999999999999999999999999999999999999987775
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.48 E-value=4e-14 Score=92.95 Aligned_cols=76 Identities=21% Similarity=0.248 Sum_probs=63.9
Q ss_pred hhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 11 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 11 ~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+-.++..--||+.+..||.|.. +..|++.+|.++|+++.|.|+.++.++|+.+|.|++|+||+++|+.+|.+-.|
T Consensus 21 ~~~r~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 21 KILRDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp ---------CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhhhhhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 3335556669999999999987 77899999999999999999999999999999999999999999999999877
Q ss_pred c
Q psy16895 91 E 91 (93)
Q Consensus 91 ~ 91 (93)
+
T Consensus 96 ~ 96 (103)
T 2yfw_B 96 R 96 (103)
T ss_dssp -
T ss_pred C
Confidence 5
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.48 E-value=4.8e-14 Score=92.48 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=69.6
Q ss_pred hhhcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 11 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 11 ~~Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+-.++..--||+.+..||.|.. +..|++.+|.++|++..|.|+.++.++|+.+|.|++|+||+++|+.+|.+-.|
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cchhhhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 3345666679999999999988 77899999999999999999999999999999999999999999999999877
Q ss_pred c
Q psy16895 91 E 91 (93)
Q Consensus 91 ~ 91 (93)
+
T Consensus 96 ~ 96 (103)
T 1tzy_D 96 R 96 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 16
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.43 E-value=2.3e-13 Score=90.53 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=62.4
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
++-||++...||+|.. +..|+++++.++|+++++.|+..+..||+..|.||||+||+++|+.++.+-.|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4679999999999998 889999999999999999999999999999999999999999999999987764
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.42 E-value=1.7e-13 Score=95.96 Aligned_cols=71 Identities=17% Similarity=0.073 Sum_probs=66.5
Q ss_pred cchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 14 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 14 ~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
..-++.||++|..|++|+. +..|++.+|.++|+++.|.|+..+.++|+..|.|+||+||+++||.++.+..
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3456789999999999999 8999999999999999999999999999999999999999999999998754
No 18
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.38 E-value=5.1e-13 Score=82.81 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=61.8
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+|..|+.++.+.+ |..+++++|...|-+-.|.++-++.++|..++.|+||+||+.+||++|.+
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 48999999999999 99999999999999999999999999999999999999999999999975
No 19
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.33 E-value=9.9e-13 Score=92.07 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=63.4
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
+|++|+.||+|+.+ +..|++.+|.++|++++|.|+..+..+|+..|.|+||+||+++|+..+..-+|
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg 71 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLM 71 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHT
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcc
Confidence 89999999999984 56999999999999999999999999999999999999999999999987765
No 20
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.33 E-value=3e-12 Score=78.87 Aligned_cols=62 Identities=21% Similarity=0.386 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 24 pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
++.|++++. |..++++++...|-+.+|.|..++.++|..+|.||||+||+.+|++||.+.|-
T Consensus 6 ~i~~iLk~~-----G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~~ 67 (68)
T 1taf_A 6 VIMSILKEL-----NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVTL 67 (68)
T ss_dssp HHHHHHHHT-----TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred HHHHHHHHC-----CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcc
Confidence 456666666 88999999999999999999999999999999999999999999999998764
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.29 E-value=4.9e-12 Score=78.70 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=61.8
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
.+|++++.|++|++. ++.+++.+|..++++++|.|+..+..+|+..|.|.+|+||+.+|++.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999884 368999999999999999999999999999999999999999999998764
No 22
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=99.22 E-value=1.1e-11 Score=83.04 Aligned_cols=62 Identities=31% Similarity=0.404 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 24 pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
...|++++...+. +..++++++.+|-+.+|.|+..+.+|+...|.||||+||+++|++|+.|
T Consensus 32 ~V~rIvke~gaer--~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALDK--EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHH--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 4677888774322 3559999999999999999999999999999999999999999999975
No 23
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=99.17 E-value=3.1e-11 Score=80.09 Aligned_cols=63 Identities=27% Similarity=0.368 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 24 pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
.+.|++++...+ ...+++++++.+|-+.++.|...+..|+...|.||||+||+.+|++|+.+-
T Consensus 24 ~V~rI~~~~g~~--~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAED--KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 456777766432 247999999999999999999999999999999999999999999999753
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.4e-11 Score=77.19 Aligned_cols=64 Identities=25% Similarity=0.208 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 24 PFQRLVREIAQDF--KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 24 pF~Rlvrei~~~~--~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+.--|-+|+.+. +.+..++++++.+|-+.+|.|+..+.+|+...|.||||+||+++|++|+.|
T Consensus 13 al~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 13 RLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3334444444443 124789999999999999999999999999999999999999999999964
No 25
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.10 E-value=1.5e-10 Score=82.70 Aligned_cols=74 Identities=15% Similarity=0.262 Sum_probs=65.8
Q ss_pred hcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 13 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 13 Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
....++.+|+++..||+|++.. +.+++.+|.++|+++++.|+.-+...|+..+.|.+|+||+++||..+..--|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 4556788999999999999932 6999999999999999999999999999999999999999999999987544
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.09 E-value=2.7e-10 Score=77.31 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=62.0
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhc
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 90 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg 90 (93)
.++.+|.++..|++|+.. +...+++.+|..+|++++|.|+..|...|+..|.|.+|+||+.+|+..|..--|
T Consensus 6 ~d~~LP~A~I~rImK~~~---pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEAL---PESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhC---cccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 467899999999999883 357899999999999999999999999999999999999999999999886544
No 27
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=99.02 E-value=3.7e-10 Score=77.98 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
.++++.+... ..+..++++++.+|-+.+|.|+..+..|+...|.||||+||+++|++|+.+-
T Consensus 25 VgkIvee~~~--~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 25 TGALAQDVAE--DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHHHHH--HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHH--hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3455555433 2367899999999999999999999999999999999999999999999753
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.89 E-value=1.2e-09 Score=70.72 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=55.2
Q ss_pred hhhhhhhh--hcchhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccH
Q psy16895 5 ALREIRRY--QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82 (93)
Q Consensus 5 ~lrEIr~~--Q~st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di 82 (93)
.+.||+.. ....++-+|.++..|++|.- ...-+++.+|...+..++|.|+..+.+.|+..|.|.||+||+++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~lP~arIkrImK~~----~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di 78 (97)
T 1n1j_B 3 HMEEIRNLTVKDFRVQELPLARIKKIMKLD----EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78 (97)
T ss_dssp -----------------CCHHHHHHHHTTS----TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHhcccCCcCCCcCCHHHHHHHHccC----ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH
Confidence 35677664 33444556666666665543 3346999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy16895 83 QLARR 87 (93)
Q Consensus 83 ~La~~ 87 (93)
+++.+
T Consensus 79 ~~Av~ 83 (97)
T 1n1j_B 79 AMAIT 83 (97)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99874
No 29
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=4.8e-09 Score=77.59 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=52.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHhcc
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~irg~ 91 (93)
|..|++.++.+.+.++.|.|+..+..+|+.+|.||+|+||++.|+.+|.+-.|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 789999999999999999999999999999999999999999999999998774
No 30
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.68 E-value=4.2e-08 Score=65.60 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+.+|..| |+.|+..-....+++.+|..++..++|.|+..+.+.|+..|...||+||+++|+..|..
T Consensus 39 ~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 39 IHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred cCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 56678887 56676655667899999999999999999999999999999999999999999999874
No 31
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.60 E-value=8.4e-08 Score=64.46 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=62.6
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..+-+|-.++.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|++|.||+++|+++|.+
T Consensus 19 agLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp HTCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 46889999999999987 126799999999999999999999999999999999999999999999975
No 32
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.56 E-value=1e-07 Score=64.31 Aligned_cols=68 Identities=25% Similarity=0.227 Sum_probs=62.4
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++-+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|++|.||+++|+++|.+
T Consensus 20 agL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 46788999999999875 246799999999999999999999999999999999999999999999975
No 33
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.52 E-value=1.4e-07 Score=64.05 Aligned_cols=68 Identities=25% Similarity=0.224 Sum_probs=62.5
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++-+|-.++.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|.+|.||+++|+++|.+
T Consensus 22 agLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp HTCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46789999999999875 256799999999999999999999999999999999999999999999975
No 34
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.49 E-value=4.2e-08 Score=63.53 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=51.8
Q ss_pred chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 15 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 15 st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..++-+|-++..|++|. -....|++.+|...+-.++|.|+..+.+.|+.+|.|.||+||+++|++++.+
T Consensus 7 k~~~~fPvaRIkrimK~----~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQT----DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp ---CCCCHHHHHHHHTT----STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred ccCCCCChHHHHHHHHc----CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 33344555555555543 3344699999999999999999999999999999999999999999998753
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.47 E-value=1.7e-07 Score=65.23 Aligned_cols=68 Identities=25% Similarity=0.228 Sum_probs=62.4
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..+.+|-.+|.|++|+- ....|++.+|-..|-.+.|.+..+++|.|...|.|++|.||+++||++|.+
T Consensus 41 agLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 46788999999998875 256799999999999999999999999999999999999999999999976
No 36
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.43 E-value=1.9e-07 Score=63.57 Aligned_cols=68 Identities=26% Similarity=0.238 Sum_probs=62.0
Q ss_pred hhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
..+-+|-.++.|++|+- ....|++.+|-..|-.+.|.+..+++|.|...|.|.+|.||+++||++|.+
T Consensus 22 agLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp GTCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 46788999999998774 256799999999999999999999999999999999999999999999975
No 37
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.42 E-value=2.8e-07 Score=62.53 Aligned_cols=67 Identities=21% Similarity=0.125 Sum_probs=61.9
Q ss_pred hhhhcccccHHHHHHHHHHhccc--cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 16 TELLIRKLPFQRLVREIAQDFKT--DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 16 t~llIpk~pF~Rlvrei~~~~~~--~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.++-+|-.++.|++++- . ..|++.+|-..|-.+.|.+..+++|.|...|.|.+|.+|+++|+++|.+
T Consensus 24 agLqfPV~ri~R~Lk~~-----~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSR-----TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp HTCSSCHHHHHHHHHHT-----SCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHc-----ccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 46889999999999887 4 3599999999999999999999999999999999999999999999975
No 38
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.33 E-value=1.8e-06 Score=58.39 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 22 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 22 k~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
+..|..-|..++.+...+..++..|+..+-...+++...+..+|..++.|.+|.||+.+||+.|.++-
T Consensus 32 ~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 32 KESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 34555556666555567889999999999999999999999999999999999999999999999874
No 39
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.31 E-value=2e-06 Score=58.32 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=60.2
Q ss_pred ccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 21 RKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 21 pk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
++..|..-|..++.+...+..++..|+..+-...+++...+..+|..++.|.+|.||+.+||+.|.++-
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 445566666666666667889999999999999999999999999999999999999999999999874
No 40
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.29 E-value=7.1e-07 Score=63.75 Aligned_cols=67 Identities=25% Similarity=0.181 Sum_probs=61.5
Q ss_pred hhhcccccHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKT-DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~-~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++.+|-.++.|++|+- .. ..|++.+|...|-.+.|.+..+++|.|...|.|+||.||+++|+++|.+
T Consensus 103 gl~fPv~ri~R~lk~~----~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRH----ATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHT----TCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhc----CccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 7889999999999885 12 3799999999999999999999999999999999999999999999975
No 41
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=2.6e-06 Score=53.20 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=60.6
Q ss_pred hhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 18 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 18 llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-+++|--.+.||++| .+...+.+++-+.|.+.+++|+.+..+.|..+|.|.|=.||.++|++|..+
T Consensus 4 ~vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 4 MVLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CSSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 356788888999998 467899999999999999999999999999999999999999999999875
No 42
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.08 E-value=3.1e-06 Score=58.10 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHh-hhcCccccCcccHHHHHH
Q psy16895 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 23 ~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a-~HakR~Tl~~~Di~La~~ 87 (93)
+|..|+ +.|+..-...-+++.+|..++..|+|.|+..|.+.|+.+| ...||+||+.+|+..|..
T Consensus 20 LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 20 LPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 444443 4454443455799999999999999999999999999999 999999999999999875
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.00 E-value=2e-05 Score=56.16 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=59.1
Q ss_pred ccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 23 ~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
-.|.-.+..+..+..++..++.+|+..|-....+.+..+..+|..++.|.+|.|++++||+.+.++-
T Consensus 3 ~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp STTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 4566666666666666899999999999999999999999999999999999999999999998763
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=90.69 E-value=0.67 Score=28.99 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=49.8
Q ss_pred hhhcccccHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 84 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~L 84 (93)
+.-||+--..||.+. .|+ ...|++++|+....+..+-|...-..-|+.-|.--+-.+|.++|++=
T Consensus 10 ~~~i~~~li~ril~~---~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 10 GSGFRKELVSRLLHL---HFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp -CCCCHHHHHHHHHT---TCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCCCHHHHHHHHHH---HhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 445776666666662 243 68999999999999999999998888888777655666888888764
No 45
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=88.05 E-value=0.33 Score=34.13 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=61.9
Q ss_pred hhhhcchhh--hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 10 RRYQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 10 r~~Q~st~l--lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
.+|.+-.++ +++-.-|.|+.|+. ..+-+..+=+.-+-+..|.-+-.||.-|...|.--+|-.|.+.|+.+...
T Consensus 15 ~~~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 15 KNYSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ------CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred ccHHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 466666777 89999999999999 66888899999999999999999999999999999999999999876554
Q ss_pred Hh
Q psy16895 88 IR 89 (93)
Q Consensus 88 ir 89 (93)
+.
T Consensus 90 lq 91 (171)
T 1r4v_A 90 LE 91 (171)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 46
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=87.84 E-value=1.7 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=49.4
Q ss_pred hhcccccHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHH
Q psy16895 18 LLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 84 (93)
Q Consensus 18 llIpk~pF~Rlvrei~~~~~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~L 84 (93)
.-||+.-..||.+.. |+ ...|++++|+.+..+..+-|...-+.-|..-|.--+-..|.++|++=
T Consensus 7 ~~~~~~lI~ril~~~---f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 7 GGFRKETVERLLRLH---FRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp CCCCHHHHHHHHHHH---CCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCCCHHHHHHHHHHH---hccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 346666677777664 43 57899999999999999999998888888876555666788887763
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=85.37 E-value=0.71 Score=30.67 Aligned_cols=30 Identities=10% Similarity=0.193 Sum_probs=28.0
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHH
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNL 67 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~ 67 (93)
|..|++.++-+.+.++.|.|+..+..||+.
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~ 90 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVT 90 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999864
No 48
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=84.73 E-value=1.9 Score=36.86 Aligned_cols=66 Identities=12% Similarity=0.116 Sum_probs=55.0
Q ss_pred hhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 17 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 17 ~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
++.+|-.-+.|+++.. .+.|+...|-.-|--+.|.....++|-|...|...++..|+++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 4555555555555333 45799999999999999999999999999999999999999999999874
No 49
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=83.88 E-value=0.85 Score=31.37 Aligned_cols=66 Identities=20% Similarity=0.289 Sum_probs=57.0
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
+|+-.-|.|+.|+. ..+-+.++=+.-+-+..|.-+-.||.-|...|.--+|-.|.+.|+.+...+.
T Consensus 2 vm~~~~~e~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGlq 67 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGLQ 67 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHHH
T ss_pred cCCHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHHH
Confidence 46677899999999 5677778888889999999999999999999999999999999987655443
No 50
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=77.03 E-value=3.5 Score=25.19 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=40.7
Q ss_pred hcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhc
Q psy16895 19 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHA 72 (93)
Q Consensus 19 lIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Ha 72 (93)
++.+.|.++=+.+|+.++ |=.-+++++...+--|+|+.|-.++|.-...|.|.
T Consensus 2 fL~~~~Lqkri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 2 FLLQAPLQRRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp CSCHHHHHHHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccccHHHHHHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 466788899999998764 34467889999999999999999999988888774
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.27 E-value=20 Score=25.60 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred ccccchHHHHHHHHHHHHH----HHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 38 TDLRFQSAAIGALQEASEA----YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~----~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
....++++++..|.+.+.. ++..+.+.|...|.-.++.+|+.+|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3567999999999999983 88899999999998899999999999988764
No 52
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=69.81 E-value=19 Score=28.41 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcc---ccccchHHHHHHHHHHH-------------HHHHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 26 QRLVREIAQDFK---TDLRFQSAAIGALQEAS-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 26 ~Rlvrei~~~~~---~~~r~~~~Al~aLqea~-------------E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
..+++.+...+. ....++++|+..|.+.+ ...+..+.+.|...|...++..|+.+|++-|...
T Consensus 296 ~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 296 RKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 334444444333 34689999999988755 5678889999999999899999999999988754
No 53
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.93 E-value=15 Score=25.88 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=42.2
Q ss_pred ccccchHHHHHHHHHHHHH-------HHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 38 TDLRFQSAAIGALQEASEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~-------~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
....++++++..|...+.. .+..+.+.|...|.-.+|.+|+.+|++-+...
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3568999999999888764 56788888888888889999999999877654
No 54
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=56.81 E-value=7.7 Score=24.39 Aligned_cols=61 Identities=8% Similarity=0.243 Sum_probs=39.9
Q ss_pred cccccHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCc-----------cccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDF-KTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR-----------VTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~-~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR-----------~Tl~~~Di~La~~ 87 (93)
||+.-..||.. ..| +.+.|++.+|+.+.++..+-|...-.--| ++-|+ .++..+|.+=+..
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs----~e~ke~~~~~~~~~~d~~LeveDLEkiaG 74 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRS----LQSHKDINGERGDKSPLELSHQDLERIVG 74 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHH----HHHHHCC-----------CCHHHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhcccccCCCCCeeehHHHHHHHH
Confidence 67777777776 224 46899999999999988777765544333 33333 4677777764443
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.55 E-value=53 Score=23.03 Aligned_cols=49 Identities=8% Similarity=0.016 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHHHH------HHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 39 DLRFQSAAIGALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
...++++++..+.+.+. -++..+.+.+...|...++.+|+.+|++-+..
T Consensus 220 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 220 PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 46788999999999988 46778888888888777888899999876653
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.89 E-value=18 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Q psy16895 45 AAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 76 (93)
Q Consensus 45 ~Al~aLqea~E~~lv~lfe~a~~~a~HakR~T 76 (93)
.....+..-.|+.-.+||+.||.+-.-++|.+
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~ 78 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMVADARKEK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556888899999999999999998887654
No 57
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=48.41 E-value=16 Score=20.89 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=26.1
Q ss_pred HHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 57 ~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-+..+..+|...|...++..|+.+|+.-+..
T Consensus 41 Di~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 41 EVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4777888888888999999999999987764
No 58
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=39.97 E-value=39 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=19.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH
Q psy16895 39 DLRFQSAAIGALQEASEAYLVGLFE 63 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E~~lv~lfe 63 (93)
.++|...--.+|||.+|++...-|-
T Consensus 113 ~yry~~~~s~~lQEyVEA~sf~~yL 137 (290)
T 3qb5_K 113 MHQFHRAITTGLQEYVEAVSFQHFI 137 (290)
T ss_dssp STTTGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788877778999999997665544
No 59
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=39.74 E-value=26 Score=20.30 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 58 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 58 lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
+..+..+|.+.|.+.++..|+.+|+.-+..
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 455566677777888888999999887754
No 60
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=39.29 E-value=46 Score=26.49 Aligned_cols=52 Identities=15% Similarity=0.339 Sum_probs=37.2
Q ss_pred hhhhhhhhc-----chhhhcccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHH
Q psy16895 6 LREIRRYQK-----STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 64 (93)
Q Consensus 6 lrEIr~~Q~-----st~llIpk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~ 64 (93)
..||+.|.+ +...++|..+|..||++-. -+|...|+.+++.+.| ++...+..
T Consensus 405 ~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi------~~l~~Pa~~~v~~V~~-~v~~~~~~ 461 (608)
T 3szr_A 405 SRKIQKFENQAAAAELPGFVNYRTFETIVKQQI------KALEEPAVDMLHTVTD-MVRLAFTD 461 (608)
T ss_dssp HHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHH------GGGHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCccHHHHHHHHHHHH------HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 467776653 3356889999999999985 4677788888877776 55555543
No 61
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=38.32 E-value=28 Score=20.59 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 57 ~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-+..+..+|.+.|.+.++..|+.+|+.-|.+
T Consensus 39 Dl~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 39 ELRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 3667777788888888999999999988765
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.04 E-value=1e+02 Score=21.40 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=37.0
Q ss_pred cccchHHHHHHHHHHHH------HHHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 39 DLRFQSAAIGALQEASE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
...++++++..+.+.+. ..+..+++.+...+...++.+|+.+|++-+.
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 216 PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 46789999999988887 2466677878777776677788888887554
No 63
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.61 E-value=30 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhcCcccc
Q psy16895 46 AIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 77 (93)
Q Consensus 46 Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl 77 (93)
....+..-.|+.-.+||+.||.+-.-|+|.+-
T Consensus 68 ~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~ 99 (135)
T 2e7s_A 68 EADKLNKEVEDLTASLFDEANNLVADARMEKY 99 (135)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558888999999999999999999887753
No 64
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=36.23 E-value=32 Score=19.73 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=24.8
Q ss_pred HHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 57 ~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-+..+..+|.+.|...++..|+.+|+.-+..
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 4556677788888888889999999987754
No 65
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=35.68 E-value=48 Score=25.05 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=42.0
Q ss_pred cccchHHHHHHHHHHH-HH---HHHHHHHHhHHHhhhcCccccCcccHHHHHHH
Q psy16895 39 DLRFQSAAIGALQEAS-EA---YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~-E~---~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~i 88 (93)
...++++++..+-..+ +- ....+++.|...|.-.++-+|+.+|++-+..+
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 4568999999888887 42 77888899988998889999999999988765
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=34.29 E-value=82 Score=20.29 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHHHHHH---HHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 39 DLRFQSAAIGALQEASEA---YLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E~---~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
...++++++..|.+.++- .+..+.+.+...|...++ +|+.+|++-+.
T Consensus 191 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 191 GLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 467899999998888773 566666666666655554 58888887664
No 67
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=32.81 E-value=38 Score=19.79 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=26.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHH-HHhHHHhhhcCccccCcccHHHHHHHh
Q psy16895 39 DLRFQSAAIGALQEASEAYLVGLF-EDTNLCAIHAKRVTIMPKDIQLARRIR 89 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E~~lv~lf-e~a~~~a~HakR~Tl~~~Di~La~~ir 89 (93)
++.|+++|...|+.+= -|+-... ...-..|...|..+|+++.+.-|..--
T Consensus 3 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 53 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHL 53 (63)
T ss_dssp CCEECHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHh
Confidence 4556777766655431 1111111 122234566777777777777665433
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.22 E-value=40 Score=19.95 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 58 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 58 lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
|..+-.+|.+.|+...+..|+.+|+.-|..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455566677777777788999999988764
No 69
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.10 E-value=42 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhcCcccc
Q psy16895 45 AAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 77 (93)
Q Consensus 45 ~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl 77 (93)
.....+..-.|+.-.+||+.||.+-.-|+|.+-
T Consensus 79 ~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~ 111 (154)
T 2ocy_A 79 EEADKLNKEVEDLTASLFDEANNMVADARKEKY 111 (154)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668888999999999999999988877643
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=28.96 E-value=38 Score=22.92 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred ccchHHH-HHHHHHHHH----HHHHHHHHHhHHHhhhcCccccCcccHHHH
Q psy16895 40 LRFQSAA-IGALQEASE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85 (93)
Q Consensus 40 ~r~~~~A-l~aLqea~E----~~lv~lfe~a~~~a~HakR~Tl~~~Di~La 85 (93)
..+..++ +..|-+.++ .-+..+.+.|...|...++.+|+.+|++-+
T Consensus 202 ~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a 252 (254)
T 1ixz_A 202 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEA 252 (254)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 3444443 444444444 346778888888888888888999998765
No 71
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=28.87 E-value=1.1e+02 Score=19.12 Aligned_cols=47 Identities=11% Similarity=0.009 Sum_probs=30.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 39 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
...++++++..|.+.+.-.+-.+......++..+ .+|+.+|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568889988888777654444444444444444 4788888887654
No 72
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=27.40 E-value=56 Score=21.94 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHhcc
Q psy16895 22 KLPFQRLVREIAQDFK 37 (93)
Q Consensus 22 k~pF~Rlvrei~~~~~ 37 (93)
.=||+.++++|+.+..
T Consensus 7 ~DPF~d~l~~iM~~Ie 22 (138)
T 3ts9_A 7 ENPFKEKLLEIMASIQ 22 (138)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 4599999999998763
No 73
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=27.38 E-value=1.1e+02 Score=22.48 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=21.4
Q ss_pred HHHhcc--ccccchHHHHHHHHHHHHHHHHHHH
Q psy16895 32 IAQDFK--TDLRFQSAAIGALQEASEAYLVGLF 62 (93)
Q Consensus 32 i~~~~~--~~~r~~~~Al~aLqea~E~~lv~lf 62 (93)
++.++. ..+++...--.+|||.+|++.-.-|
T Consensus 101 la~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~y 133 (298)
T 3axj_B 101 VALELRDQDVYQFRSSYSPGLQEFIQAYTYMEY 133 (298)
T ss_dssp HHHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccCHHHHHhccCHHHHHHHHHHHHHHH
Confidence 444444 3467866666899999999766555
No 74
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=27.01 E-value=89 Score=19.72 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=28.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHH
Q psy16895 39 DLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 86 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~ 86 (93)
...++++++..|.+.+.-..-.+......++..++. +|+.+|++-+.
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~~ 248 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAML 248 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHHh
Confidence 467888999888888875433333333333333433 78888887653
No 75
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=25.16 E-value=46 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=13.5
Q ss_pred HhhhcCccccCcccHHHHHHH
Q psy16895 68 CAIHAKRVTIMPKDIQLARRI 88 (93)
Q Consensus 68 ~a~HakR~Tl~~~Di~La~~i 88 (93)
.|...|...|+++.+.-|..-
T Consensus 31 ~Are~G~~~IT~ev~~~AK~~ 51 (62)
T 2l09_A 31 LARQAEQDIVTPELVEQARLE 51 (62)
T ss_dssp HHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHcCCCeEcHHHHHHHHHH
Confidence 456667777777777666543
No 76
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=24.36 E-value=81 Score=18.73 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy16895 44 SAAIGALQEASEAYLVGLFEDT 65 (93)
Q Consensus 44 ~~Al~aLqea~E~~lv~lfe~a 65 (93)
.+|+..++++.+.++..+.++-
T Consensus 47 eEA~~~a~eAl~~~le~~~e~g 68 (87)
T 2dsy_A 47 KECEANLQAALEDWLLFLLSRG 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 6899999999999998887754
No 77
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.60 E-value=1.9e+02 Score=20.22 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHH---H---HHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 39 DLRFQSAAIGALQEASE---A---YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 39 ~~r~~~~Al~aLqea~E---~---~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
...++++++..+.+.+. - .+..+++.+...|. +..+|+.+|++-+..
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 45788999999888887 2 46677777777766 566788888876643
No 78
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.53 E-value=1.1e+02 Score=21.66 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 25 F~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
....++++..+ ....++++|+..|-+.++.-+-.+...-..++..++..+|+.+|++-+..
T Consensus 147 l~~~l~~~~~~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 147 LPRWVAARAKQ--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp HHHHHHHHHHH--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 44445555432 45789999999999888865555555445555544444788888876543
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=23.51 E-value=1.7e+02 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhhhcCccccCcccHHHH
Q psy16895 58 LVGLFEDTNLCAIHAKRVTIMPKDIQLA 85 (93)
Q Consensus 58 lv~lfe~a~~~a~HakR~Tl~~~Di~La 85 (93)
+..+...|...|...+|-.|+++|++++
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~~a 282 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLILL 282 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGGGG
T ss_pred HHHHHHHHHHHHhhcCCccccchHHHHH
Confidence 4456667788899999999999999854
No 80
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=23.02 E-value=1.2e+02 Score=21.58 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=20.4
Q ss_pred HHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH
Q psy16895 29 VREIAQDFK--TDLRFQSAAIGALQEASEAYLVGLF 62 (93)
Q Consensus 29 vrei~~~~~--~~~r~~~~Al~aLqea~E~~lv~lf 62 (93)
++++..... ..+|+...--.++||.+|+....-|
T Consensus 87 ~~~L~~~l~~~~~yrY~~~~s~~lQE~VEA~~f~~y 122 (249)
T 3axj_A 87 YQKLAELVPAGQYYRYSDHWTFITQRLIFIIALVIY 122 (249)
T ss_dssp HHHHHHHSCTTCHHHHGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHhhhccHHHHHHHHHHHHHHH
Confidence 344444333 3456766666788888888655544
No 81
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.84 E-value=75 Score=21.41 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHhhhcCccccCcccHHHHHH
Q psy16895 57 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 87 (93)
Q Consensus 57 ~lv~lfe~a~~~a~HakR~Tl~~~Di~La~~ 87 (93)
-+..+.+.|...|...++.+|+.+|++-|..
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 5667888888889888899999999987764
No 82
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=21.27 E-value=1.5e+02 Score=18.05 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=50.9
Q ss_pred cccccHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcC-ccccCcccHHHHHH
Q psy16895 20 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAK-RVTIMPKDIQLARR 87 (93)
Q Consensus 20 Ipk~pF~Rlvrei~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Hak-R~Tl~~~Di~La~~ 87 (93)
+||....|++..+ .+..++++.+.++.-.+=.|+.+|-|.|..+...-+ +-=|.|+-+.-|.+
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 7888888888777 356788999999999999999999999998887654 33677777777744
No 83
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.43 E-value=86 Score=21.82 Aligned_cols=49 Identities=8% Similarity=0.074 Sum_probs=28.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCcc----ccCcccHHHHH
Q psy16895 38 TDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV----TIMPKDIQLAR 86 (93)
Q Consensus 38 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakR~----Tl~~~Di~La~ 86 (93)
....++++++..|-+.+.-.+-.+......++..+++- +|+.+|++-+.
T Consensus 208 ~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~ 260 (353)
T 1sxj_D 208 ENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELA 260 (353)
T ss_dssp TTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHh
Confidence 35678899988888777643333322222233334443 78888887543
Done!