RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16895
(93 letters)
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 164 bits (418), Expect = 1e-55
Identities = 90/93 (96%), Positives = 92/93 (98%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVG
Sbjct: 3 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 62
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 93
LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 63 LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 95
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 49.0 bits (117), Expect = 2e-09
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVG 60
+ + + L + +R+++ R S A+ +
Sbjct: 61 KALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEE 115
Query: 61 LFEDTNLCAIHAKRVTIMPKDIQLA 85
L E A R T+ +D++ A
Sbjct: 116 LGEKAAEYADEDGRKTVQGEDVEKA 140
Score = 28.6 bits (64), Expect = 0.061
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83
+R+ R+ + R A + + + + + T+M + ++
Sbjct: 6 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLK 61
Query: 84 LARRIRGER 92
+
Sbjct: 62 ALADVLMVE 70
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 35.9 bits (83), Expect = 5e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R I + R A L E E Y + + + A HA R T+ +DI
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60
Query: 83 QLA 85
+LA
Sbjct: 61 KLA 63
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 33.6 bits (77), Expect = 3e-04
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 41 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85
R A AL + E + + A HA R TI +DI+LA
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELA 64
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 34.8 bits (80), Expect = 4e-04
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 5 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFED 64
A I + ++ L + L++E+ + + E + +
Sbjct: 85 AQSAIEKRKRRNPLSLPVEKIHPLLKEVLGY-----KIDHQVSVYIVAVLEYISADILKL 139
Query: 65 TNLCAIHAKRVTIMPKDIQLARR 87
+ + I +DI++A
Sbjct: 140 AGNYVRNIRHYEITKQDIKVAMC 162
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 32.9 bits (75), Expect = 0.001
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
LP + R + + A +QE ++ + + + KR TI +DI
Sbjct: 3 LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62
Query: 83 QLA 85
A
Sbjct: 63 LFA 65
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 30.9 bits (70), Expect = 0.006
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 41 RFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 91
R + + +L + D HAKR T+ D+ A + +G
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 76
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 31.0 bits (70), Expect = 0.009
Identities = 8/63 (12%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 23 LPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
+P + ++ ++ ++R + A + ++ + + N +++ TI P+ +
Sbjct: 5 IPRAA-INKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHV 63
Query: 83 QLA 85
A
Sbjct: 64 IQA 66
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 68
Score = 29.3 bits (66), Expect = 0.019
Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 27 RLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 85
+++ I ++ ++ + L E + Y+ + +D + A HA++ TI D++LA
Sbjct: 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLA 62
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 89
Score = 27.9 bits (62), Expect = 0.083
Identities = 12/62 (19%), Positives = 20/62 (32%)
Query: 24 PFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 83
P + R I + A A+ A+ + + + + A TI KDI
Sbjct: 1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDIL 60
Query: 84 LA 85
Sbjct: 61 QT 62
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 27.0 bits (60), Expect = 0.13
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 22 KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 81
+ P R +++I Q + + +A + A E +L L + T+
Sbjct: 2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSH 60
Query: 82 IQLA 85
++
Sbjct: 61 LKQC 64
>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 125
Score = 25.3 bits (55), Expect = 0.87
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 25 FQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIH 71
++ L E+A+ + + F +I A + A + + E L AIH
Sbjct: 34 YKPLFTELAKKNRGLMNF--VSIDARKFGRHAGNLNMKEQFPLFAIH 78
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 70
Score = 23.5 bits (51), Expect = 2.4
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 46 AIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 88
A L E L + +D HAKR + +DI ++ ++
Sbjct: 28 AAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 24.4 bits (51), Expect = 2.6
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 54 SEAYLVGLFEDTNLCAIHAKRVTIMPKDI 82
+ + L + +R +P +I
Sbjct: 185 DLDVVRRIICSAGLSLLAEERQENLPDEI 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.381
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,221
Number of extensions: 12697
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 17
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)