BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16896
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 59/207 (28%)
Query: 40 RIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFH--A 97
+++ D ++ L E+ + IYTDG K + G G A + TK+ L V H A
Sbjct: 602 QVVHDDWRMKLVEEPTSGITIYTDGGK-QNGEGIAAYVTSNGRTKQKRL---GPVTHQVA 657
Query: 98 ELFSILQSLNHVKELNTRKILIISDSLSSFQAIS---NLHHP-NPLVKKIHEEYSNSQAN 153
E +I +L ++ +++ I++DS ++ I+ L P NP
Sbjct: 658 ERMAIQMALEDTRD---KQVNIVTDSYYCWKNITEGLGLEGPQNPW-------------- 700
Query: 154 IKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERA 213
W P+++ I+E + + F W P H GI GN+ A
Sbjct: 701 ----W---------------------PIIQNIRE-----KEIVYFAWVPGHKGIYGNQLA 730
Query: 214 DVEA--KKATKMEYRMDQYKHKADVEA 238
D A K+ + Y+ Q K K D +A
Sbjct: 731 DEAAKIKEEIMLAYQGTQIKEKRDEDA 757
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 40 RIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFH--A 97
+++ D ++ L E+ + IYTDG K + G G A + TK+ L V H A
Sbjct: 603 QVVHDDWRMKLVEEPTSGITIYTDGGK-QNGEGIAAYVTSNGRTKQKRL---GPVTHQVA 658
Query: 98 ELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFL 157
E +I +L ++ +++ I++DS ++ I+ E +
Sbjct: 659 ERMAIQMALEDTRD---KQVNIVTDSYYCWKNIT--------------EGLGLEGPQSPW 701
Query: 158 WCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEA 217
W P+++ I+E + + F W P H GI GN+ AD A
Sbjct: 702 W---------------------PIIQNIRE-----KEIVYFAWVPGHKGICGNQLADEAA 735
Query: 218 --KKATKMEYRMDQYKHKADVEA 238
K+ + Y+ Q K K D +A
Sbjct: 736 KIKEEIMLAYQGTQIKEKRDEDA 758
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 40 RIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFH--A 97
+++ D ++ L E+ + IYTDG K + G G A + TK+ L V H A
Sbjct: 603 QVVHDDWRMKLVEEPTSGITIYTDGGK-QNGEGIAAYVTSNGRTKQKRL---GPVTHQVA 658
Query: 98 ELFSILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFL 157
E +I +L ++ +++ I++DS ++ I+ E +
Sbjct: 659 ERMAIQMALEDTRD---KQVNIVTDSYYCWKNIT--------------EGLGLEGPQSPW 701
Query: 158 WCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEA 217
W P+++ I+E + + F W P H GI GN+ AD A
Sbjct: 702 W---------------------PIIQNIRE-----KEIVYFAWVPGHKGICGNQLADEAA 735
Query: 218 --KKATKMEYRMDQYKHKADVEA 238
K+ + Y+ Q K K D +A
Sbjct: 736 KIKEEIMLAYQGTQIKEKRDEDA 758
>sp|A1URX4|RNH_BARBK Ribonuclease H OS=Bartonella bacilliformis (strain ATCC 35685 /
KC583) GN=rnhA PE=3 SV=1
Length = 155
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 34/176 (19%)
Query: 58 LKIYTDGS-KDETGVGCALTIPQLNETKR--FALNKHSSVFHAELFSILQSLNHVKELNT 114
++IYTDG+ G+G I + N +R + ++++ EL + + +LN +KE +
Sbjct: 8 IEIYTDGACSGNPGLGGWGAILRWNSHERELYGGKEYTTNNQMELMAAICALNALKE--S 65
Query: 115 RKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISN 174
I + +DS+ IS N + N S V ++ +QA+
Sbjct: 66 CSIDLYTDSVYVRNGISLW-------------LENWKKNNWRTASKSPVKNMELWQALDG 112
Query: 175 LHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQY 230
+ ++ N+++ W H G NERAD A+KA EYR + Y
Sbjct: 113 ---------------ACARHNVRWHWVKGHAGHPDNERADALARKAI-TEYRQNGY 152
>sp|O27456|DP2S_METTH DNA polymerase II small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=polB PE=3 SV=1
Length = 482
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 20/104 (19%)
Query: 116 KILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNS-------QANIKFLWCPSHVDSLSS 168
K L+++ + I L++ IHE+Y + +++IK + P + DS
Sbjct: 266 KYLVVAGDIVDGIGIYPGQEKELLIRDIHEQYEEAARLFGDIRSDIKIVMIPGNHDS--- 322
Query: 169 FQAISNLHHPNPLVKKIQEEYSNSQA---NIKFLWCPSHVGISG 209
S + P P I EEY+ S NI+FL PS V + G
Sbjct: 323 ----SRIAEPQP---AIPEEYAKSLYSIRNIEFLSNPSLVSLDG 359
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 34.3 bits (77), Expect = 1.7, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 47/155 (30%)
Query: 61 YTDGSKD-ETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILI 119
Y DG+ + ET +G A + + + K L++ ++ AEL +IL +L KE + I
Sbjct: 1027 YVDGAANRETKLGKAGYVTEQGKQKIIKLDETTNQ-KAELMAILLALQDSKE----TVNI 1081
Query: 120 ISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPN 179
++DS + IS SQ P+ +S
Sbjct: 1082 VTDSQYALGVIS------------------SQ--------PTQSES-------------- 1101
Query: 180 PLVKKIQEEYSNSQANIKFLWCPSHVGISGNERAD 214
P+V++I EE + + + W P+H GI GNE+ D
Sbjct: 1102 PIVQQIIEELTKKE-QVYLTWVPAHKGIGGNEKID 1135
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 34.3 bits (77), Expect = 2.1, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERAD 214
+P+V++I EE + + + W P+H GI GNE+ D
Sbjct: 1103 SPIVQQIIEELTKKE-RVYLTWVPAHKGIGGNEKID 1137
>sp|Q03W49|ADDA_LEUMM ATP-dependent helicase/nuclease subunit A OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=addA PE=3 SV=1
Length = 1230
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 1 MATQRTRLNTVKPKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYED 56
+ TQ R + + K + +LL PD D+ + IQ +F EIL ++Y+D
Sbjct: 353 LVTQAFRESFRRTKREEKLLDFPDLGTLALAILSDDVTKQTIQGQFDEILVDEYQD 408
>sp|P47431|Y185_MYCGE Uncharacterized lipoprotein MG185 OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=MG185 PE=3 SV=1
Length = 701
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 172 ISNLHHPNPLVKKIQEEYSNSQAN-IKFLWCPSHVGISGNERADVEAKK------ATKME 224
IS L +V K + + ++ I + PS +GI NER D+E KK TK++
Sbjct: 542 ISTLQEKEAIVLKAPQRFESTDPFPIALVQGPSLIGIHANEREDIETKKFVNWYLNTKVQ 601
Query: 225 YRMDQYKHKADVEAKKAT 242
+ + K A+ A KA+
Sbjct: 602 WEENSIKTPAEYVADKAS 619
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 32.0 bits (71), Expect = 9.0, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEA 238
+P+V++I ++ + A I W P+H GI GNE D K + +D EA
Sbjct: 1129 SPIVEQIIQKLTQKTA-IYLAWVPAHKGIGGNEEVDKLVSKNIRKILFLDGIN-----EA 1182
Query: 239 KKATSEPISNHSLLLDE 255
++ + SN L DE
Sbjct: 1183 QEDHDKYHSNWKALADE 1199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,610,530
Number of Sequences: 539616
Number of extensions: 5720868
Number of successful extensions: 16164
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 16155
Number of HSP's gapped (non-prelim): 26
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)