Query psy16896
Match_columns 423
No_of_seqs 254 out of 1595
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:28:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 6.9E-26 2.3E-30 202.1 13.0 143 54-224 4-152 (154)
2 3h08_A RNH (ribonuclease H); R 99.9 9.4E-26 3.2E-30 199.3 11.4 141 55-224 2-145 (146)
3 3qio_A GAG-POL polyprotein; RN 99.9 5.7E-25 1.9E-29 195.9 10.8 138 53-223 8-147 (150)
4 1jl1_A Ribonuclease HI; RNAse 99.9 9.7E-25 3.3E-29 195.1 11.6 139 56-225 3-145 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.9 1.6E-24 5.4E-29 194.4 11.4 137 56-223 5-145 (158)
6 2lsn_A Reverse transcriptase; 99.9 1.1E-23 3.7E-28 190.4 12.6 141 55-223 5-163 (165)
7 3p1g_A Xenotropic murine leuke 99.9 2.3E-23 8E-28 188.3 12.5 130 56-226 22-159 (165)
8 1ril_A Ribonuclease H; hydrola 99.9 4.2E-24 1.4E-28 193.3 7.5 140 56-225 7-150 (166)
9 2kq2_A Ribonuclease H-related 99.9 2.1E-23 7.3E-28 185.0 7.3 130 55-226 4-140 (147)
10 3hst_B Protein RV2228C/MT2287; 99.8 2E-19 7E-24 156.6 14.9 128 57-226 3-136 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 9.4E-20 3.2E-24 158.0 12.4 126 56-224 2-138 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.8 5E-19 1.7E-23 156.3 13.7 125 58-225 2-136 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 7E-19 2.4E-23 186.8 11.5 121 54-221 433-555 (555)
14 2zd1_A Reverse transcriptase/r 99.8 5.6E-19 1.9E-23 187.6 8.9 120 54-220 436-557 (557)
15 1zbf_A Ribonuclease H-related 99.5 1.8E-14 6.1E-19 126.9 4.0 128 54-215 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 3.9E-12 1.3E-16 110.5 7.6 78 55-133 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 86.1 0.11 3.7E-06 53.1 -0.9 74 55-133 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 66.1 19 0.00064 36.2 8.8 71 54-127 321-400 (428)
19 2z3g_A Blasticidin-S deaminase 30.5 63 0.0022 26.9 4.9 53 70-123 28-80 (130)
20 2fr5_A Cytidine deaminase; tet 28.2 85 0.0029 26.8 5.4 54 70-124 37-92 (146)
21 2zd1_A Reverse transcriptase/r 28.0 2E+02 0.0068 29.5 9.3 75 55-132 324-407 (557)
22 2nx8_A TRNA-specific adenosine 24.5 94 0.0032 27.3 5.1 29 94-122 63-91 (179)
23 1uwz_A Cytidine deaminase; CDD 22.6 1.2E+02 0.0041 25.3 5.3 54 70-124 25-80 (136)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=6.9e-26 Score=202.14 Aligned_cols=143 Identities=20% Similarity=0.292 Sum_probs=114.3
Q ss_pred cCCcEEEEEcCCcCCCC-----ceEEEEEecCCe-EEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHH
Q psy16896 54 YEDHLKIYTDGSKDETG-----VGCALTIPQLNE-TKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSF 127 (423)
Q Consensus 54 ~~~~i~IyTDGS~~~~~-----~G~g~vi~~~~~-~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai 127 (423)
..+.++||||||+..++ +|+|+|+..+.. ..+..++..+|++.|||.|++.||+.+.+.+..+|.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 35789999999997432 789998765432 355567667899999999999999999987789999999999999
Q ss_pred HHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCC
Q psy16896 128 QAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGI 207 (423)
Q Consensus 128 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi 207 (423)
+.|..+ +..|..++|+++. +..+.+.+|+++|.+++. +..|.|.|||||+|+
T Consensus 84 ~~i~~~-----~~~w~~~~w~~~~---------------------~~~~~n~~l~~~i~~l~~--~~~v~~~~V~~H~g~ 135 (154)
T 2qkb_A 84 NGITNW-----VQGWKKNGWKTSA---------------------GKEVINKEDFVALERLTQ--GMDIQWMHVPGHSGF 135 (154)
T ss_dssp HHHHTH-----HHHHHTTTSBCTT---------------------SSBCTTHHHHHHHHHHHT--TCEEEEEECCTTSSC
T ss_pred hhhhhh-----HHHHHhccccccC---------------------CCccccHHHHHHHHHHHc--CCceEEEEccCCCCC
Confidence 999875 2356666664321 223456678888887764 467999999999999
Q ss_pred cCCHHHHHHHHHHhhhh
Q psy16896 208 SGNERADVEAKKATKME 224 (423)
Q Consensus 208 ~GNe~AD~lAk~A~~~~ 224 (423)
+|||.||+|||+|+..+
T Consensus 136 ~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 136 IGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HhHHHHHHHHHHHHHhc
Confidence 99999999999998754
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.93 E-value=9.4e-26 Score=199.30 Aligned_cols=141 Identities=21% Similarity=0.230 Sum_probs=109.6
Q ss_pred CCcEEEEEcCCcCCC--CceEEEEEecCCeEEEEe-cCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 55 EDHLKIYTDGSKDET--GVGCALTIPQLNETKRFA-LNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 55 ~~~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~~-l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
...++||||||+..+ .+|+|+|+..++....+. ..+.+|++.|||.|++.||+.+.+ ..+|.|+|||++++++|+
T Consensus 2 ~~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 2 EKTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CCEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred CceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 357999999999854 389999988776433222 124689999999999999999976 589999999999999998
Q ss_pred CCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 132 NLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
..+ +..|..++|+++. +.++.+.+|++++.+++.. ..|.|.|||||+|++|||
T Consensus 80 ~~w----~~~W~~~~w~~~~---------------------~~~v~n~~l~~~~~~~~~~--~~v~~~~V~gH~g~~~N~ 132 (146)
T 3h08_A 80 EGW----LKRWVKNGWKTAA---------------------KKPVENIDLWQEILKLTTL--HRVTFHKVKGHSDNPYNS 132 (146)
T ss_dssp SSH----HHHHHHTTCC-------------------------CCCTTHHHHHHHHHHHHH--SEEEEEECCC-CCSHHHH
T ss_pred HHH----HHHHHHCCCccCC---------------------CCCcCCHHHHHHHHHHHhh--CceEEEEcCCcCCcHhHH
Confidence 732 3467777775432 2345667888888887753 579999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy16896 212 RADVEAKKATKME 224 (423)
Q Consensus 212 ~AD~lAk~A~~~~ 224 (423)
.||+|||+|+...
T Consensus 133 ~AD~LA~~a~~~~ 145 (146)
T 3h08_A 133 RADELARLAIKEN 145 (146)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.92 E-value=5.7e-25 Score=195.92 Aligned_cols=138 Identities=19% Similarity=0.276 Sum_probs=103.0
Q ss_pred hcCCcEEEEEcCCcCCC--CceEEEEEecCCeEEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHH
Q psy16896 53 KYEDHLKIYTDGSKDET--GVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAI 130 (423)
Q Consensus 53 ~~~~~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l 130 (423)
+..+.+.||||||+..+ ..|+|+++..+.. ....+ ..+|++.||+.|++.||+.+ ..+|.|+|||++++++|
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 81 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHH
Confidence 45678999999999743 3788888766543 33333 47899999999999999985 47999999999999999
Q ss_pred hCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCC
Q psy16896 131 SNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGN 210 (423)
Q Consensus 131 ~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GN 210 (423)
+.+ +..|..++|+++. +.++.+.+|++++.+++. ....|.|.|||||+|++||
T Consensus 82 ~~w-----~~~W~~~gw~~~~---------------------g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~g~~~N 134 (150)
T 3qio_A 82 TQW-----IHNWKKRGWKTAD---------------------KKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHKGIGGN 134 (150)
T ss_dssp HHH-----HHHHCC---------------------------------CHHHHHHHHHHHT-TCSEEEEEECCTTSCCHHH
T ss_pred HHH-----HHHHhhcCcCcCc---------------------CcccccHHHHHHHHHHHh-hcCceEEEEccCcCCChhH
Confidence 864 2356666664332 234567788888877663 5689999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy16896 211 ERADVEAKKATKM 223 (423)
Q Consensus 211 e~AD~lAk~A~~~ 223 (423)
|.||+||++|+..
T Consensus 135 e~AD~LA~~a~~~ 147 (150)
T 3qio_A 135 EQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.91 E-value=9.7e-25 Score=195.14 Aligned_cols=139 Identities=22% Similarity=0.291 Sum_probs=110.4
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEecCCeEEEE--ecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 56 DHLKIYTDGSKDET--GVGCALTIPQLNETKRF--ALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 56 ~~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~--~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
..+.||||||+..+ .+|+|+|+...+....+ .+ +.+|++.|||.|++.||+.+.+ ..+|.|+|||++++++|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 46899999999853 38999998776543322 23 4678999999999999999876 379999999999999999
Q ss_pred CCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 132 NLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
.+. ..|..++|.++. +.++.+.+|+++|.+++. ...|.|.|||||+|++|||
T Consensus 80 ~w~-----~~W~~n~~~~~~---------------------g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne 131 (155)
T 1jl1_A 80 QWI-----HNWKKRGWKTAD---------------------KKPVKNVDLWQRLDAALG--QHQIKWEWVKGHAGHPENE 131 (155)
T ss_dssp TTH-----HHHHHTTTBCTT---------------------SCBCTTHHHHHHHHHHTT--TCEEEEEECCSSTTCHHHH
T ss_pred HHH-----HHHhhccccccc---------------------CCccCCHHHHHHHHHHHc--cCceEEEEcCCCCCCHHHH
Confidence 853 457766664332 234556778888877763 4689999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy16896 212 RADVEAKKATKMEY 225 (423)
Q Consensus 212 ~AD~lAk~A~~~~~ 225 (423)
.||+|||+|+..+.
T Consensus 132 ~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 132 RADELARAAAMNPT 145 (155)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998764
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.91 E-value=1.6e-24 Score=194.43 Aligned_cols=137 Identities=24% Similarity=0.302 Sum_probs=108.6
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEecCCeEEEE--ecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 56 DHLKIYTDGSKDET--GVGCALTIPQLNETKRF--ALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 56 ~~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~--~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
..++||||||+..+ .+|+|+|+..++....+ .+ +.+|++.|||.|++.||+.+.+ ..+|.|+|||++|+++|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 56999999999843 38999998766543322 23 3579999999999999999865 389999999999999998
Q ss_pred CCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 132 NLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
.+ +..|..++|.++. +.++.+.+|++.+.+++. ...|.|.|||||+|++|||
T Consensus 82 ~w-----~~~W~~n~~~~~~---------------------g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne 133 (158)
T 2e4l_A 82 TW-----IHGWKKKGWMTSN---------------------RTPVKNVDLWKRLDKAAQ--LHQIDWRWVKGHAGHAENE 133 (158)
T ss_dssp TH-----HHHHHHTTTBCTT---------------------SSBCTTHHHHHHHHHHHT--TSEEEEEECCTTCCCHHHH
T ss_pred HH-----HHHHHHccccccC---------------------CCcccCHHHHHHHHHHHc--cCcEEEEEccCCCCchhHH
Confidence 75 2357766664321 224556678888877774 4689999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy16896 212 RADVEAKKATKM 223 (423)
Q Consensus 212 ~AD~lAk~A~~~ 223 (423)
.||+|||+|+..
T Consensus 134 ~AD~LAk~a~~~ 145 (158)
T 2e4l_A 134 RCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 999999999987
No 6
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.90 E-value=1.1e-23 Score=190.45 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCcCC-CC------ceEEEEEecCCe----EEEEecC-CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcC
Q psy16896 55 EDHLKIYTDGSKDE-TG------VGCALTIPQLNE----TKRFALN-KHSSVFHAELFSILQSLNHVKELNTRKILIISD 122 (423)
Q Consensus 55 ~~~i~IyTDGS~~~-~~------~G~g~vi~~~~~----~~~~~l~-~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sD 122 (423)
...++|||||||.. ++ +|+|+|+...+. ...+..+ ...+++.||+.|+..||+.++.. ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 45689999999983 22 799998765432 2223332 45677888888888888877664 357999999
Q ss_pred CHHHHHHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEcc
Q psy16896 123 SLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCP 202 (423)
Q Consensus 123 S~sai~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVp 202 (423)
|+||+++|+.+ +..|..++|+++ -+.++++.+|++++.+++.. ...|.|.|||
T Consensus 84 S~Yvi~~it~w-----~~~Wk~ngw~~~---------------------~~~pVkN~dL~~~l~~~~~~-~~~v~~~~Vk 136 (165)
T 2lsn_A 84 SFYVAESANKE-----LPYWKSNGFVNN---------------------KKKPLKHISKWKSIAECLSM-KPDITIQHEK 136 (165)
T ss_dssp CHHHHHHHHTH-----HHHHHHTTSCSC---------------------SSSCCSSHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred hHHHHhhhhhh-----hhhheecccccc---------------------CCCcccCHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 99999999875 346777777543 24567888999998887744 4689999999
Q ss_pred CCCCC------cCCHHHHHHHHHHhhh
Q psy16896 203 SHVGI------SGNERADVEAKKATKM 223 (423)
Q Consensus 203 gH~gi------~GNe~AD~lAk~A~~~ 223 (423)
||+|+ +|||+||+||++|+..
T Consensus 137 gH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 137 GHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp SSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 99995 5899999999999854
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.89 E-value=2.3e-23 Score=188.32 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=102.4
Q ss_pred CcEEEEEcCCcC--CCCceEEEEEecCCeEEEE-ecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHhC
Q psy16896 56 DHLKIYTDGSKD--ETGVGCALTIPQLNETKRF-ALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISN 132 (423)
Q Consensus 56 ~~i~IyTDGS~~--~~~~G~g~vi~~~~~~~~~-~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~~ 132 (423)
..+.||||||+. ++.+|+|++++.++..... .+...+||+.||+.|++.||+.+ ....|.|+|||++++++|..
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHS
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhc
Confidence 359999999997 3448899988776654332 45567899999999999999998 26899999999999999821
Q ss_pred CCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCC-----C
Q psy16896 133 LHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVG-----I 207 (423)
Q Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~g-----i 207 (423)
. .. +..+.+.+|++++.+.+. .+..|.|.|||||+| +
T Consensus 99 ~--~~-----------------------------------g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~ 140 (165)
T 3p1g_A 99 H--SE-----------------------------------GREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEA 140 (165)
T ss_dssp C--CC-----------------------------------SCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHH
T ss_pred c--cC-----------------------------------CCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcc
Confidence 1 11 123445667777766553 568999999999999 9
Q ss_pred cCCHHHHHHHHHHhhhhhh
Q psy16896 208 SGNERADVEAKKATKMEYR 226 (423)
Q Consensus 208 ~GNe~AD~lAk~A~~~~~~ 226 (423)
+|||+||+|||+|+.....
T Consensus 141 ~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 141 RGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCC
Confidence 9999999999999988754
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.89 E-value=4.2e-24 Score=193.25 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=109.2
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEecCCeEEEEec-CCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHhC
Q psy16896 56 DHLKIYTDGSKDET--GVGCALTIPQLNETKRFAL-NKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAISN 132 (423)
Q Consensus 56 ~~i~IyTDGS~~~~--~~G~g~vi~~~~~~~~~~l-~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~~ 132 (423)
..++||||||+..+ .+|+|+|+...+....+.. ...+|++.|||.|++.||+.+.+. ..|.|+|||+++++.|..
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 57899999999853 3899999876554322221 136799999999999999988763 589999999999999987
Q ss_pred -CCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 133 -LHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 133 -~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
+ +..|..++|+++. +..+.+.+|++++.+++. ...|.|.|||||+|++||+
T Consensus 85 ~w-----~~~W~~~~w~~~~---------------------g~~v~n~~l~~~i~~l~~--~~~v~~~wV~gH~g~~~Ne 136 (166)
T 1ril_A 85 GW-----LEGWRKRGWRTAE---------------------GKPVKNRDLWEALLLAMA--PHRVRFHFVKGHTGHPENE 136 (166)
T ss_dssp SH-----HHHHHHTTSBCTT---------------------SSBCTTHHHHHHHHHHHT--TSEEECCCCCGGGSCTHHH
T ss_pred hH-----HHHHHhccccccc---------------------CCccCcHHHHHHHHHHHh--cCeEEEEEeeCCCCchhHH
Confidence 4 2356666665332 223456678888887774 3689999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy16896 212 RADVEAKKATKMEY 225 (423)
Q Consensus 212 ~AD~lAk~A~~~~~ 225 (423)
.||+|||+|+....
T Consensus 137 ~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 137 RVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=2.1e-23 Score=184.96 Aligned_cols=130 Identities=16% Similarity=0.114 Sum_probs=95.7
Q ss_pred CCcEEEEEcCCcCCCCceEEEEEecCCeEE--EE-ec--CC--CccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHH
Q psy16896 55 EDHLKIYTDGSKDETGVGCALTIPQLNETK--RF-AL--NK--HSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSF 127 (423)
Q Consensus 55 ~~~i~IyTDGS~~~~~~G~g~vi~~~~~~~--~~-~l--~~--~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai 127 (423)
++.+.||||||+.++.+|+|+|+..++... +. .. +. .+||+.|||.|++.||+.+.+.+. +|.|+|||+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i~ 82 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGIA 82 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTHH
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHHH
Confidence 567899999999997799999998766533 33 22 22 369999999999999999988777 999999998777
Q ss_pred HHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCC
Q psy16896 128 QAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGI 207 (423)
Q Consensus 128 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi 207 (423)
+.+.+.+..+. ... ..+.++++.....|.|.|||||+|+
T Consensus 83 ~w~~~~w~~~~--~~~---------------------------------------~~~~~l~~~l~~~v~~~wV~gH~g~ 121 (147)
T 2kq2_A 83 FWATGEWKAKN--EFT---------------------------------------QAYAKLMNQYRGIYSFEKVKAHSGN 121 (147)
T ss_dssp HHTTSSSSCCH--HHH---------------------------------------HHHHCGGGGGSTTCCBCCCCCCCCC
T ss_pred HHHhCCCccCC--cch---------------------------------------HHHHHHHHHhcCCeeEEEecCcCCC
Confidence 66655432221 000 0111122211228999999999999
Q ss_pred cCCHHHHHHHHHHhhhhhh
Q psy16896 208 SGNERADVEAKKATKMEYR 226 (423)
Q Consensus 208 ~GNe~AD~lAk~A~~~~~~ 226 (423)
+|||.||+|||+|+.....
T Consensus 122 ~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 122 EFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHHHHHHHHHHHHTCCCT
T ss_pred cchHHHHHHHHHHHhcccc
Confidence 9999999999999987754
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.82 E-value=2e-19 Score=156.56 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=96.8
Q ss_pred cEEEEEcCCcCCC--CceEEEEEecCC--e-EEEEe-cCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHH
Q psy16896 57 HLKIYTDGSKDET--GVGCALTIPQLN--E-TKRFA-LNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAI 130 (423)
Q Consensus 57 ~i~IyTDGS~~~~--~~G~g~vi~~~~--~-~~~~~-l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l 130 (423)
.++||||||+..+ .+|+|+++...+ . ...+. ..+.+|++.||+.|++.||+.+.+.+..+|.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 5899999999853 489999987653 2 22222 1237899999999999999999998889999999999999999
Q ss_pred hCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCC
Q psy16896 131 SNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGN 210 (423)
Q Consensus 131 ~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GN 210 (423)
++.+.... ..+. +++.++..++ +....|.|.|||+ ++|
T Consensus 83 ~~~~~~~~--~~l~-----------------------------------~~~~~i~~l~-~~~~~v~~~~V~~----~~N 120 (141)
T 3hst_B 83 SGRWKVKH--PDLL-----------------------------------KLYVQAQALA-SQFRRINYEWVPR----ARN 120 (141)
T ss_dssp TTSSCCCS--HHHH-----------------------------------HHHHHHHHHH-TTSSEEEEEECCG----GGC
T ss_pred hCCcccCC--HHHH-----------------------------------HHHHHHHHHH-hcCCeEEEEEcCC----ccc
Confidence 87542211 1110 1334445544 4458999999997 699
Q ss_pred HHHHHHHHHHhhhhhh
Q psy16896 211 ERADVEAKKATKMEYR 226 (423)
Q Consensus 211 e~AD~lAk~A~~~~~~ 226 (423)
+.||+|||+|+.....
T Consensus 121 ~~AD~LA~~a~~~~~~ 136 (141)
T 3hst_B 121 TYADRLANDAMDAAAQ 136 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987753
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.81 E-value=9.4e-20 Score=158.01 Aligned_cols=126 Identities=18% Similarity=0.264 Sum_probs=94.7
Q ss_pred CcEEEEEcCCcCCC--CceEEEEEecCC-eE-EE--EecCCCccchhhhHHHHHHHHHHHHhhCCC----cEEEEcCCHH
Q psy16896 56 DHLKIYTDGSKDET--GVGCALTIPQLN-ET-KR--FALNKHSSVFHAELFSILQSLNHVKELNTR----KILIISDSLS 125 (423)
Q Consensus 56 ~~i~IyTDGS~~~~--~~G~g~vi~~~~-~~-~~--~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~----~v~I~sDS~s 125 (423)
..++||||||+..+ .+|+|+++...+ .. .. ..+ +.+|++.||+.|++.||+.+.+.+.. +|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 36899999999853 489999987743 22 12 223 35799999999999999999987777 9999999999
Q ss_pred HHHHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHH-HhcCCCceEEEEccCC
Q psy16896 126 SFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEE-YSNSQANIKFLWCPSH 204 (423)
Q Consensus 126 ai~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~-l~~~~~~V~~~WVpgH 204 (423)
+++.+++.+.... +.+ .+++.++.++ + +....|.|.|||+
T Consensus 81 vi~~i~~~~~~~~--~~l-----------------------------------~~~~~~i~~l~~-~~~~~v~~~~V~~- 121 (140)
T 3u3g_D 81 IVRQMQGVYKVKE--PTL-----------------------------------KEKFAKIAHIKM-ERVPNLVFVHIPR- 121 (140)
T ss_dssp HHHHHTTSSCCCC--GGG-----------------------------------HHHHHHHHHHHH-HHCTTCEEEECCG-
T ss_pred HHHHhCCCcccCC--HHH-----------------------------------HHHHHHHHHHhh-cCCCcEEEEEcCc-
Confidence 9999998653110 111 1134455555 4 3345899999996
Q ss_pred CCCcCCHHHHHHHHHHhhhh
Q psy16896 205 VGISGNERADVEAKKATKME 224 (423)
Q Consensus 205 ~gi~GNe~AD~lAk~A~~~~ 224 (423)
+||+.||+|||+|+...
T Consensus 122 ---~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 122 ---EKNARADELVNEAIDKA 138 (140)
T ss_dssp ---GGGHHHHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHHhc
Confidence 69999999999998765
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.80 E-value=5e-19 Score=156.32 Aligned_cols=125 Identities=21% Similarity=0.236 Sum_probs=96.4
Q ss_pred EEEEEcCCcC--C-CCceE-EEEEecCCeEE-EE--ecC---CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHH
Q psy16896 58 LKIYTDGSKD--E-TGVGC-ALTIPQLNETK-RF--ALN---KHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSF 127 (423)
Q Consensus 58 i~IyTDGS~~--~-~~~G~-g~vi~~~~~~~-~~--~l~---~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai 127 (423)
+.||||||+. + +.+|+ |+++...+... .+ .++ ..+|++.||+.|++.||+.+.+.+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 5799999997 2 45785 99888755432 22 233 37899999999999999999998889999999999999
Q ss_pred HHHhCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCC
Q psy16896 128 QAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGI 207 (423)
Q Consensus 128 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi 207 (423)
+.+++++..+. .. ..+++.++..++... .|.|.|||||
T Consensus 82 ~~i~~~w~~~~--~~-----------------------------------~~~l~~~i~~l~~~~--~v~~~~V~~~--- 119 (149)
T 2ehg_A 82 KQMNGEYKVKA--KR-----------------------------------IIPLYEKAIELKKKL--NATLIWVPRE--- 119 (149)
T ss_dssp HHHTTSSCCCC--TT-----------------------------------HHHHHHHHHHHHHHH--TCEEEECCGG---
T ss_pred HHHhCccccCC--HH-----------------------------------HHHHHHHHHHHHhcC--CEEEEEcCCc---
Confidence 99998743221 00 123556666666443 5999999995
Q ss_pred cCCHHHHHHHHHHhhhhh
Q psy16896 208 SGNERADVEAKKATKMEY 225 (423)
Q Consensus 208 ~GNe~AD~lAk~A~~~~~ 225 (423)
+|+.||+||++|+....
T Consensus 120 -~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 120 -ENKEADRLSRVAYELVR 136 (149)
T ss_dssp -GCHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHhhc
Confidence 99999999999998774
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.77 E-value=7e-19 Score=186.79 Aligned_cols=121 Identities=23% Similarity=0.309 Sum_probs=94.6
Q ss_pred cCCcEEEEEcCCcCCC-C-ceEEEEEecCCeEEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 54 YEDHLKIYTDGSKDET-G-VGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 54 ~~~~i~IyTDGS~~~~-~-~G~g~vi~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
..+.++||||||+..+ + +|+|+++..++.. ...+ ..+||+.||+.|++.||+. +..+|.|+|||++|+++|+
T Consensus 433 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~ 506 (555)
T 1mu2_A 433 IPGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVA 506 (555)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHH
T ss_pred CCCceEEEEcccccCCCCCceEEEEEEeCCEe-eccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHh
Confidence 3567999999999843 3 7889888765532 3333 4679999999999999997 4689999999999999998
Q ss_pred CCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 132 NLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
++.... +.++++++.+++.. ...|.|.|||||+|++|||
T Consensus 507 ~~~~~~----------------------------------------~~~l~~~~~~~~~~-~~~v~~~wV~~H~g~~~Ne 545 (555)
T 1mu2_A 507 SQPTES----------------------------------------ESKIVNQIIEEMIK-KEAIYVAWVPAHKGIGGNQ 545 (555)
T ss_dssp TCCSEE----------------------------------------SCHHHHHHHHHHHH-CSEEEEEECCSSSCCTTHH
T ss_pred cccccc----------------------------------------cHHHHHHHHHHhcc-CCcEEEEEEECCCCChhHH
Confidence 753211 12345555655533 5789999999999999999
Q ss_pred HHHHHHHHHh
Q psy16896 212 RADVEAKKAT 221 (423)
Q Consensus 212 ~AD~lAk~A~ 221 (423)
.||+||++|+
T Consensus 546 ~AD~LA~~a~ 555 (555)
T 1mu2_A 546 EVDHLVSQGI 555 (555)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.76 E-value=5.6e-19 Score=187.61 Aligned_cols=120 Identities=23% Similarity=0.336 Sum_probs=90.7
Q ss_pred cCCcEEEEEcCCcCC-CC-ceEEEEEecCCeEEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 54 YEDHLKIYTDGSKDE-TG-VGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 54 ~~~~i~IyTDGS~~~-~~-~G~g~vi~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
..+.+.||||||+.. ++ +|+|+++..++. ..... ..+||+.||+.|++.||+.+ ..+|.|+|||++|+++|+
T Consensus 436 ~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~-~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~ 509 (557)
T 2zd1_A 436 IVGAETFYVDGAANRETKLGKAGYVTNKGRQ-KVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQ 509 (557)
T ss_dssp CTTSCEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHT
T ss_pred CCCCEEEEEccCCCCCCCceEEEEEEECCcE-EEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHh
Confidence 356799999999974 33 788888765443 33333 46899999999999999998 578999999999999998
Q ss_pred CCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHhcCCCceEEEEccCCCCCcCCH
Q psy16896 132 NLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNE 211 (423)
Q Consensus 132 ~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~~~~~~V~~~WVpgH~gi~GNe 211 (423)
.+...+ +.++++++.+.+.+ ...|.|.|||||+|++|||
T Consensus 510 ~~~~~~----------------------------------------~~~l~~~~~~~l~~-~~~v~~~wV~~H~g~~~Ne 548 (557)
T 2zd1_A 510 AQPDKS----------------------------------------ESELVNQIIEQLIK-KEKVYLAWVPAHKGIGGNE 548 (557)
T ss_dssp TCCSEE----------------------------------------SSHHHHHHHHHHHH-CSEEEEEECCSSSCCTTCC
T ss_pred cCCccC----------------------------------------CHHHHHHHHHHHhc-CCCEEEEEcCCCCCChhHH
Confidence 854221 12344555555543 4689999999999999999
Q ss_pred HHHHHHHHH
Q psy16896 212 RADVEAKKA 220 (423)
Q Consensus 212 ~AD~lAk~A 220 (423)
.||+||++|
T Consensus 549 ~AD~LA~~a 557 (557)
T 2zd1_A 549 QVDKLVSAG 557 (557)
T ss_dssp GGGGCC---
T ss_pred HHHHHHhcC
Confidence 999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.47 E-value=1.8e-14 Score=126.88 Aligned_cols=128 Identities=13% Similarity=0.012 Sum_probs=90.6
Q ss_pred cCCcEEEEEcCCcCC--CCceEEEEEecCCeEEEEecC-CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHH
Q psy16896 54 YEDHLKIYTDGSKDE--TGVGCALTIPQLNETKRFALN-KHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAI 130 (423)
Q Consensus 54 ~~~~i~IyTDGS~~~--~~~G~g~vi~~~~~~~~~~l~-~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l 130 (423)
....+.||||||+.. +.+|+|+|+...+.......+ ..+|++.||+.|++.||+.+.+.+. +|.|+|||++|++.+
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 356788999999974 348999998754443333222 2579999999999999999998766 999999999999977
Q ss_pred hCCCCCChhhHHHHhhhhccccccccccCCCCCCcchhhhhhccCCCCcHHHHHHHHHHh-cCCCceEEEEccCCCCCcC
Q psy16896 131 SNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEEYS-NSQANIKFLWCPSHVGISG 209 (423)
Q Consensus 131 ~~~~~~~~~~~~i~~~~~~~~~~~~~~W~~~~~~~~~~~~~i~~~~~~~~l~~~i~~~l~-~~~~~V~~~WVpgH~gi~G 209 (423)
++....+ +....+.+.+|++.+..+.. -+...+....|..|++.-|
T Consensus 87 ~~~~~k~---------------------------------~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~g 133 (142)
T 1zbf_A 87 KDKKAKS---------------------------------TLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWG 133 (142)
T ss_dssp HHTCCCC---------------------------------CCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHC
T ss_pred HcCCccC---------------------------------CCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccC
Confidence 6543111 01233456677776655421 1234455666888999999
Q ss_pred CHHHHH
Q psy16896 210 NERADV 215 (423)
Q Consensus 210 Ne~AD~ 215 (423)
|..||.
T Consensus 134 e~pad~ 139 (142)
T 1zbf_A 134 EIKADY 139 (142)
T ss_dssp SCTTCC
T ss_pred cCcccc
Confidence 999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.29 E-value=3.9e-12 Score=110.53 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCcCC-CC-ceEEEEEecCCeEEEEecC-CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCHHHHHHHh
Q psy16896 55 EDHLKIYTDGSKDE-TG-VGCALTIPQLNETKRFALN-KHSSVFHAELFSILQSLNHVKELNTRKILIISDSLSSFQAIS 131 (423)
Q Consensus 55 ~~~i~IyTDGS~~~-~~-~G~g~vi~~~~~~~~~~l~-~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~sai~~l~ 131 (423)
+..+.|||||||.. .| +|+|+|+...+.......+ ..+||+.||+.|++.||+.+.+.+.. |.|+|||++|++.|.
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 45678999999984 33 8887766665543322211 36899999999999999999886544 899999999998776
Q ss_pred CC
Q psy16896 132 NL 133 (423)
Q Consensus 132 ~~ 133 (423)
+.
T Consensus 82 ~~ 83 (134)
T 4htu_A 82 DK 83 (134)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=86.07 E-value=0.11 Score=53.09 Aligned_cols=74 Identities=7% Similarity=-0.016 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCcCCCCceEEEEEecCC----e---EEEEecC---CCccchhhhHHHHHHHHHHHHh-hCCCcEEEEcCC
Q psy16896 55 EDHLKIYTDGSKDETGVGCALTIPQLN----E---TKRFALN---KHSSVFHAELFSILQSLNHVKE-LNTRKILIISDS 123 (423)
Q Consensus 55 ~~~i~IyTDGS~~~~~~G~g~vi~~~~----~---~~~~~l~---~~~sv~~AEl~AI~~AL~~a~~-~~~~~v~I~sDS 123 (423)
...+.+|||+|.. ++| | |+.+.. . ..+..+. ...+++..|++||..|++.... .....++|+||+
T Consensus 344 ~~~~~l~~DAS~~--~~g-a-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh 419 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-G-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPH 419 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-B-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSS
T ss_pred CCcEEEEEeccCC--cce-e-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecC
Confidence 4457899999853 222 2 333321 1 1122232 3457889999999999998865 346799999999
Q ss_pred HHHHHHHhCC
Q psy16896 124 LSSFQAISNL 133 (423)
Q Consensus 124 ~sai~~l~~~ 133 (423)
. ++..+.+.
T Consensus 420 ~-~~~~l~~~ 428 (455)
T 1rw3_A 420 A-VEALVKQP 428 (455)
T ss_dssp C-TTTTSSST
T ss_pred h-HHHHhCCC
Confidence 6 66555544
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=66.10 E-value=19 Score=36.21 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=44.7
Q ss_pred cCCcEEEEEcCCcCCCCceEEEEEecCC-e-EEEEecC--CCccchhhhHHH-HHHHHHHHHhh--C--CCcEEEEcCCH
Q psy16896 54 YEDHLKIYTDGSKDETGVGCALTIPQLN-E-TKRFALN--KHSSVFHAELFS-ILQSLNHVKEL--N--TRKILIISDSL 124 (423)
Q Consensus 54 ~~~~i~IyTDGS~~~~~~G~g~vi~~~~-~-~~~~~l~--~~~sv~~AEl~A-I~~AL~~a~~~--~--~~~v~I~sDS~ 124 (423)
....+.++||+|.. .++|+++.+.+ . ..+.++. .....+.-|++| |+.||+..... | ...+.++||.+
T Consensus 321 ~~~~~~l~~das~~---g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 321 PSKDLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp TTSCCEEEEEEEET---TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCCCEEEEEecCCC---CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 35568999999942 24566666654 2 2233332 234555677777 99999876542 3 35678889997
Q ss_pred HHH
Q psy16896 125 SSF 127 (423)
Q Consensus 125 sai 127 (423)
...
T Consensus 398 ~~~ 400 (428)
T 2zd1_B 398 WET 400 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 19
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=30.46 E-value=63 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=32.5
Q ss_pred CceEEEEEecCCeEEEEecCCCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCC
Q psy16896 70 GVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKILIISDS 123 (423)
Q Consensus 70 ~~G~g~vi~~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS 123 (423)
.+|++++..++................||..||..|...- ......+.|++|.
T Consensus 28 ~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~G-~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 28 SVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAA-AGNLTCIVAIGNE 80 (130)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTT-CCCEEEEEEEETT
T ss_pred CEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHcC-CCceEEEEEEECC
Confidence 4777765444433333333333346789999999998742 2245678888875
No 20
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=28.23 E-value=85 Score=26.76 Aligned_cols=54 Identities=22% Similarity=0.102 Sum_probs=33.6
Q ss_pred CceEEEEEecCCeEEEEecCC--CccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCH
Q psy16896 70 GVGCALTIPQLNETKRFALNK--HSSVFHAELFSILQSLNHVKELNTRKILIISDSL 124 (423)
Q Consensus 70 ~~G~g~vi~~~~~~~~~~l~~--~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~ 124 (423)
.+|++++..++.......... ......||..||..|... -......+.|++|..
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 477776544444443333332 224568999999999975 223457889998863
No 21
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=27.98 E-value=2e+02 Score=29.53 Aligned_cols=75 Identities=11% Similarity=-0.012 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCcCCCCceEEEEEecCCe--EE--EEecCCCccchhhhHHH-HHHHHHHHHh--hCC-CcEEE-EcCCHH
Q psy16896 55 EDHLKIYTDGSKDETGVGCALTIPQLNE--TK--RFALNKHSSVFHAELFS-ILQSLNHVKE--LNT-RKILI-ISDSLS 125 (423)
Q Consensus 55 ~~~i~IyTDGS~~~~~~G~g~vi~~~~~--~~--~~~l~~~~sv~~AEl~A-I~~AL~~a~~--~~~-~~v~I-~sDS~s 125 (423)
...+.+|||+|.. +.+|+++.+.+. .. .+.-......++-|++| ++.+|+.... .+. ..+.| ++|++.
T Consensus 324 ~~~~~l~~das~~---g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 324 SKDLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp TSCCEEEEEEEET---TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CCCEEEEEecCCC---CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 4568899999853 224666666432 21 22323345667789999 9999887543 122 24555 788875
Q ss_pred HHHHHhC
Q psy16896 126 SFQAISN 132 (423)
Q Consensus 126 ai~~l~~ 132 (423)
.......
T Consensus 401 ~~~~~~~ 407 (557)
T 2zd1_A 401 ETWWTEY 407 (557)
T ss_dssp HHHHHHC
T ss_pred HHHhhhc
Confidence 5444433
No 22
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=24.48 E-value=94 Score=27.31 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=20.7
Q ss_pred chhhhHHHHHHHHHHHHhhCCCcEEEEcC
Q psy16896 94 VFHAELFSILQSLNHVKELNTRKILIISD 122 (423)
Q Consensus 94 v~~AEl~AI~~AL~~a~~~~~~~v~I~sD 122 (423)
...||..||..|.+..........++|+-
T Consensus 63 t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 63 IMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp TCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred ccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 56799999999987654434456777763
No 23
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=22.61 E-value=1.2e+02 Score=25.31 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=32.2
Q ss_pred CceEEEEEecCCeEEEEecC--CCccchhhhHHHHHHHHHHHHhhCCCcEEEEcCCH
Q psy16896 70 GVGCALTIPQLNETKRFALN--KHSSVFHAELFSILQSLNHVKELNTRKILIISDSL 124 (423)
Q Consensus 70 ~~G~g~vi~~~~~~~~~~l~--~~~sv~~AEl~AI~~AL~~a~~~~~~~v~I~sDS~ 124 (423)
.+|++++..++......... .......||..||..|... -......+.|++|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCCC
Confidence 35655543334333333333 2234578999999999976 233457888988753
Done!