RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16896
(423 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 1e-10
Identities = 70/370 (18%), Positives = 129/370 (34%), Gaps = 114/370 (30%)
Query: 42 IQDRFQEI--LHEKYEDHL----------------------KIYTDG--------SKDET 69
D F+E+ L++ Y + K++T G + T
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 70 G-----VGCALTIP-----QLNETKRFALNKHSSVFHAELFSILQSL-NHVKELNTRKIL 118
+ ++ P QL A K EL S L+ H + L T +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 119 IISDSLSSF-----QAISNLHHPNPLVKKI----HEEYSNSQANIKFLW--------CPS 161
+DS SF +AI+ L I +E Y N+ L PS
Sbjct: 284 AETDSWESFFVSVRKAITVLFF-------IGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 162 H---VDSLSSFQAISNLHHPN---PLVKKIQEEYSNSQANIKFLWCPSHVGISGNERA-- 213
+ +L+ Q ++ N P K+++ N ++ +SG ++
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---------AKNLVVSGPPQSLY 387
Query: 214 --DVEAKKATKMEYRMDQYKHKADVEAKKATSE--PISN--HSLLLDEMKSIIKKHFYQK 267
++ +KA K +DQ + K ++ P+++ HS LL +I K +
Sbjct: 388 GLNLTLRKA-KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 268 ---WN------TVWTSINPNENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITK 318
+N V+ + + + LR + SI+ R+ + C++R+ + T+
Sbjct: 447 NVSFNAKDIQIPVYDTFD-GSD-LRVLSGSISE--------RIVD-CIIRLPVKWETTTQ 495
Query: 319 WNATRKCLVF 328
+ AT L F
Sbjct: 496 FKATH-ILDF 504
Score = 31.9 bits (72), Expect = 0.45
Identities = 34/238 (14%), Positives = 80/238 (33%), Gaps = 72/238 (30%)
Query: 39 ARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNETKRFALNKHSSVFHAE 98
A +Q++F +IL E E + DE ++ AE
Sbjct: 30 ASQLQEQFNKILPEPTEGF------AADDEP----------------------TTP--AE 59
Query: 99 LFS-ILQSLNHVKELNTRKIL--IISDSLSSFQAI----SNLH---------HPNPLVKK 142
L L ++ + E + +++ L+ F+ +++H + LVK
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 143 --IHEEYSNSQANIKFLWCPSHVDSLSSFQAIS----NLH-------HPNPLVKKIQEEY 189
+ + Y ++ K + +L F+A+ L + + +++++ Y
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 190 SNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEA--KKATSEP 245
+ L S +S R ++A+K + ++ + ++ P
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKV---------FTQGLNILEWLENPSNTP 226
Score = 31.2 bits (70), Expect = 0.76
Identities = 47/320 (14%), Positives = 85/320 (26%), Gaps = 106/320 (33%)
Query: 26 DLTLTVYKKHDICARIIQDRFQEILHEKYE-----------DHLKIYTDGSKDETGVGCA 74
DL YK A+ + +R + Y +L I+ G K G
Sbjct: 1634 DL----YKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GKR 1683
Query: 75 LT---IPQLNETKRFALNKHSSVFHAELFSILQSL--NHVKEL-----NT-RKILIISDS 123
+ + ET K +F E+ S K L T + ++
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEKGLLSATQFTQPALTLME-- 1740
Query: 124 LSSFQAISNLHHPNPLVKKI--HE--EYSNSQANIKFLWCPSHVDSLSSFQAISNLHHPN 179
++F+ + + P H EY+ A L + V S+ S +
Sbjct: 1741 KAAFEDLKS-KGLIPADATFAGHSLGEYA---A----LASLADVMSIES--LVE------ 1784
Query: 180 PLVKK----IQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKAD 235
+V +Q + G + A ++ Q +
Sbjct: 1785 -VVFYRGMTMQVAVPRDEL--------------GRSNYGMIAINPGRVAASFSQEALQYV 1829
Query: 236 VE-AKKATSEP--------------ISNHSLLLDEMKSIIKKHFYQKWNTVWTSINPNEN 280
VE K T + LD + +++ N
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVL-----------------NFI 1872
Query: 281 KLRRIKSSITPWKTSSQKAR 300
KL++I S ++
Sbjct: 1873 KLQKIDIIELQKSLSLEEVE 1892
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 52.7 bits (127), Expect = 1e-08
Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 49/185 (26%)
Query: 55 EDHLKIYTDGSKDET--GVGCALTIPQLNETKRFAL-----NKHSSVFHAELFSILQSLN 107
+YTDGS A + + E+ + L ++
Sbjct: 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVK 63
Query: 108 HVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLS 167
+L KI I+ D I+ +A
Sbjct: 64 KASQLGV-KIRILHDY----AGIAFWATGEW------------KAK-------------- 92
Query: 168 SFQAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRM 227
N + + + + F +H G N+ D++AK A +
Sbjct: 93 -----------NEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLE 141
Query: 228 DQYKH 232
+ H
Sbjct: 142 HHHHH 146
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 43.7 bits (103), Expect = 2e-05
Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 49/173 (28%)
Query: 60 IYTDGS-KDETGVGCA--LTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRK 116
YTDGS + G A + AL +S AEL ++ Q+L K +K
Sbjct: 26 WYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQAL---KMAEGKK 82
Query: 117 ILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLH 176
+ + +DS Y+ S + I N
Sbjct: 83 LNVYTDS----------------------RYA-----FATAH------VHSEGREIKN-- 107
Query: 177 HPNPLVKKIQEEYSNSQANIKFLWCPSHVG-----ISGNERADVEAKKATKME 224
+ + + + + + CP H GN AD A++A
Sbjct: 108 --KNEILALLKALFLPK-RLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 40/298 (13%), Positives = 75/298 (25%), Gaps = 67/298 (22%)
Query: 134 HHPNPLVKKIHEEYS-----NSQANIKFLWCPSHVDSLSSFQAISNLHHPNPLVKKIQEE 188
HH + + +Y A + C D S +S + I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEE-----IDHIIMS 57
Query: 189 YSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKATSEPISN 248
++ W ++ VE ++ M + T I
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQ 115
Query: 249 HSLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKTSSQKARLDE-VCLM 307
L ++ + K + V +++ ++ + R + V +
Sbjct: 116 RDRLYNDNQVFAKYN-------V-----SRLQPYLKLRQAL-------LELRPAKNVLID 156
Query: 308 RMR-IGHTKITKWNATRKCLVFKIFQINSFCVPWKTSSQKARLDEVCLM----------- 355
+ G T W A CL +K+ F + W + V M
Sbjct: 157 GVLGSGKT----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 356 -----------RLRIGHTKITHSHLFKREERPEC-----DTCHEPVTVEHLLLHCNKL 397
+LRI + L K + C + + L C L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKIL 269
Score = 34.8 bits (79), Expect = 0.063
Identities = 72/513 (14%), Positives = 133/513 (25%), Gaps = 149/513 (29%)
Query: 1 MATQRTRLNTVKPKNQRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEKYEDHLKI 60
+ + + + + DC K +QD + IL ++ DH I
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDC--------KD------VQDMPKSILSKEEIDH--I 54
Query: 61 YTDGSKDETG---VGCALTIPQLNETKRF---ALNKH----SSVFHAELFSILQSLNHVK 110
L+ + ++F L + S E S+
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRM 111
Query: 111 ELNTRKIL------IISDSLSSFQAISNLHH------PNPLVKKIH------------EE 146
+ R L ++S Q L P V I +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDV 170
Query: 147 YSNSQANIKF----LW-----CPSHVDSLSSFQAI-----SNLHHPNPLVKKIQEEYSNS 192
+ + K W C S L Q + N + I+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 QANIKFLWC-PSHVGISGNERA-----DVEAKKATKMEYRMD---------QYKHKADVE 237
QA ++ L + E +V+ KA + ++K D
Sbjct: 231 QAELRRLLKSKPY------ENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFL 281
Query: 238 AKKATSEPISNH---SLLLDEMKSIIKKHFYQKWNTVWTSINPNENKLRRIKSSITPWKT 294
+ T+ +H +L DE+KS++ K + P + L R + P +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLK---------YLDCRPQD--LPREVLTTNPRRL 330
Query: 295 SSQKARLDEVCLMRMRIG---HTKITKWNAT-------------RKCLV-FKIFQINS-- 335
S + + H K RK +F ++
Sbjct: 331 SIIAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 336 ----FCVPW---KTSSQKARLDEVCLMRLRIGHTK-ITHS-HLFKREERPECDTCHEPVT 386
+ W S ++++ L K T S E + + +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE------- 440
Query: 387 VEHLLLHCNKL--RFRPP-SFLGNSLSNILSDN 416
LH + + P +F + L D
Sbjct: 441 -NEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQ 471
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 11/37 (29%)
Query: 47 QEILHEKYEDHLKIYTDGSKDETGVGCALTIPQLNET 83
Q + +K + LK+Y D S AL I T
Sbjct: 20 QAL--KKLQASLKLYADDSAP------ALAI---KAT 45
Score = 29.9 bits (66), Expect = 0.82
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 216 EAKKATKMEYRMDQYK-HKADVEAKKATSE 244
E + K++ + Y A A KAT E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 27.6 bits (60), Expect = 5.0
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 279 ENKLRRIKSSITPWKTSSQKA 299
+ L+++++S+ + S A
Sbjct: 19 KQALKKLQASLKLYADDSAPA 39
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 37.6 bits (88), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 191 NSQANIKFLWCPSHVGISGNERADVEAKKATKM 223
+I+++ P H G GNE AD A++ K
Sbjct: 119 TQGMDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 36.4 bits (85), Expect = 0.006
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 181 LVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKA 220
LV +I E+ + + W P+H GI GNE+ D
Sbjct: 106 LVNQIIEQLIKKE-KVYLAWVPAHKGIGGNEQVDKLVSAG 144
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded
RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus
tokodaii} PDB: 3aly_A
Length = 149
Score = 34.3 bits (79), Expect = 0.030
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 12/78 (15%)
Query: 58 LKIYTDGSKDET------GVGCALTIPQLNETKRFALNKHSSVFH-----AELFSILQSL 106
+ Y DG + G + + + + + L + + AE ++ +
Sbjct: 2 IIGYFDGLCEPKNPGGIATFGFVIYLDN-RKIEGYGLAEKPFSINSTNNVAEYSGLICLM 60
Query: 107 NHVKELNTRKILIISDSL 124
+ L +I DS
Sbjct: 61 ETMLRLGISSPIIKGDSQ 78
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 34.4 bits (79), Expect = 0.078
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERAD 214
+ LV +I E+ + + W P+H GI GNE+ D
Sbjct: 517 SELVNQIIEQLIKKEK-VYLAWVPAHKGIGGNEQVD 551
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 32.9 bits (76), Expect = 0.083
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 195 NIKFLWCPSHVGISGNERADVEAKKATK 222
IK+ W H G NERAD A+ A
Sbjct: 115 QIKWEWVKGHAGHPENERADELARAAAM 142
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 32.8 bits (76), Expect = 0.086
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 195 NIKFLWCPSHVGISGNERADVEAKKATK 222
+ F H N RAD A+ A K
Sbjct: 116 RVTFHKVKGHSDNPYNSRADELARLAIK 143
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 32.6 bits (75), Expect = 0.11
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 195 NIKFLWCPSHVGISGNERADVEAKKATKMEYRMDQYKHKADVEAKKA 241
++F + H G NER D EA++ + + + + ++A
Sbjct: 120 RVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHEEA 166
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 32.5 bits (75), Expect = 0.11
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 195 NIKFLWCPSHVGISGNERADVEAKKATK 222
I + W H G + NER D A+ A +
Sbjct: 117 QIDWRWVKGHAGHAENERCDQLARAAAE 144
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 32.4 bits (74), Expect = 0.30
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERAD 214
+ +V +I EE +A I W P+H GI GN+ D
Sbjct: 514 SKIVNQIIEEMIKKEA-IYVAWVPAHKGIGGNQEVD 548
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 29.2 bits (66), Expect = 1.3
Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 48/171 (28%)
Query: 56 DHLKIYTDGSKD----ETGVGCALTIPQLNETKRFALNKHSSVFH--AELFSILQSLNHV 109
+ I DG G G + + + + AE ++ L+
Sbjct: 2 VKVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDA 61
Query: 110 KELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSF 169
+L + ++ D S L +V+++ + ++
Sbjct: 62 VKLGATEAAVLMD--------SKL-----VVEQMSGRWKVKHPDLL-------------- 94
Query: 170 QAISNLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKA 220
L + + ++ I + W P N AD A A
Sbjct: 95 ----------KLYVQA-QALASQFRRINYEWVPRA----RNTYADRLANDA 130
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma
mansoni} SCOP: c.55.1.3 c.55.1.3
Length = 451
Score = 30.3 bits (68), Expect = 1.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 30 TVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCAL 75
++YK H + D ++ + L++ DGS G G A
Sbjct: 401 SLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGS----GKGAAA 442
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK,
transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB:
2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Length = 307
Score = 27.1 bits (61), Expect = 9.7
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 109 VKELNTRKILIISDSLSSFQA----ISNLHHPNPLVK 141
VK+L + + F ++ H N LV+
Sbjct: 59 VKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN-LVE 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.400
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,182,466
Number of extensions: 346509
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 46
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)