RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16896
(423 letters)
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
transcriptase) {Human immunodeficiency virus type 2
[TaxId: 11709]}
Length = 126
Score = 40.7 bits (94), Expect = 5e-05
Identities = 29/162 (17%), Positives = 44/162 (27%), Gaps = 47/162 (29%)
Query: 60 IYTDGS-KDETGVGCALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELNTRKIL 118
YTDGS ++ G A + + K L + ++ AEL + +L
Sbjct: 10 FYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTDSGPKVN---- 64
Query: 119 IISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAISNLHHP 178
II DS ++ + E S I
Sbjct: 65 IIVDSQYVMGIVA---------SQPTESESKIVNQIIEEMIKKE---------------- 99
Query: 179 NPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKA 220
I W P+H GI GN+ D +
Sbjct: 100 ----------------AIYVAWVPAHKGIGGNQEVDHLVSQG 125
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
[TaxId: 274]}
Length = 147
Score = 39.9 bits (92), Expect = 1e-04
Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 32/171 (18%)
Query: 57 HLKIYTDGS-KDETGVG--CALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELN 113
+ ++TDG+ G G AL +E ++ EL + ++ L +K
Sbjct: 3 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALK--E 60
Query: 114 TRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAIS 173
++ + +DS +A + + N
Sbjct: 61 PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLA---------- 110
Query: 174 NLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKME 224
+ ++F + H G NER D EA++ + +
Sbjct: 111 -----------------MAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ 144
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
562]}
Length = 152
Score = 36.5 bits (83), Expect = 0.002
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 33/175 (18%)
Query: 57 HLKIYTDGS-KDETGVG--CALTIPQLNETKRFALNKHSSVFHAELFSILQSLNHVKELN 113
++I+T GS G G A+ + E A ++ EL + + +L +KE
Sbjct: 2 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-- 59
Query: 114 TRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWCPSHVDSLSSFQAIS 173
+ + + I + N + V ++ +Q +
Sbjct: 60 -------------HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLD 106
Query: 174 NLHHPNPLVKKIQEEYSNSQANIKFLWCPSHVGISGNERADVEAKKATKMEYRMD 228
+ IK+ W H G NERAD A+ A D
Sbjct: 107 AALGQH---------------QIKWEWVKGHAGHPENERADELARAAAMNPTLED 146
>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
mansoni) [TaxId: 6183]}
Length = 237
Score = 33.3 bits (76), Expect = 0.038
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 30 TVYKKHDICARIIQDRFQEILHEKYEDHLKIYTDGSKDETGVGCAL 75
++YK H + D ++ + L++ DGS G G A
Sbjct: 191 SLYKFHPKFCERMTDMVDKLKPKNTRFCLRLSEDGS----GKGAAA 232
>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase
MetH, N-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 300
Score = 30.4 bits (67), Expect = 0.42
Identities = 25/243 (10%), Positives = 71/243 (29%), Gaps = 21/243 (8%)
Query: 109 VKELNTRKILII---------SDSLSSFQAISNLHHPNPLVKKIHEEYSNSQANIKFLWC 159
V +L + ++L++ N+ P+ +V K+H Y S +++
Sbjct: 7 VSKLLSERVLLLDGAYGTEFMKYGYDDLPEELNIKAPD-VVLKVHRSYIESGSDVILTNT 65
Query: 160 PSHVDSLSSFQAISNLHHPNPLVKKIQEEYSNS-QANIKFLWCPSHVGISGNERADVEAK 218
F A + L K+ N+ + + G G
Sbjct: 66 ---------FGATRMKLRKHGLEDKLDPIVRNAVRIARRAAGEKLVFGDIGPTGELPYPL 116
Query: 219 KATKMEYRMDQYKHKADVEAKKATSEPISNHSLLLDEMKSIIKKHF-YQKWNTVWTSINP 277
+T E + ++ ++ ++ I + E+K+ + + + +
Sbjct: 117 GSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTF 176
Query: 278 NENKLRRIKSSITPWKTSSQKARLDEVCLMRMRIGHTKITKWNATRKCLVFKIFQINSFC 337
+E + + + + +D + + + + + + +
Sbjct: 177 DEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAG 236
Query: 338 VPW 340
P
Sbjct: 237 KPI 239
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 27.9 bits (62), Expect = 2.3
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 16 QRRLLKEPDCDLTLTVYKKHDICARIIQDRFQEILHEK--YEDHLKIYTDGSKDETGVGC 73
Q+R K +VY ++ + ++I D I ++D +G G
Sbjct: 181 QKRGYKTGHIAADGSVYNRYPGFKEKAANALKDIYGWTQTSLDDYPIKIVPAEDGSGAGA 240
Query: 74 AL 75
A+
Sbjct: 241 AV 242
>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 297
Score = 25.9 bits (56), Expect = 9.1
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 101 SILQSLNHVKELNTRKILIISDSLSSFQAISNLHHPNPLVKKIHEEYS 148
S ++++K+ ++ + L F S PL++ + +E S
Sbjct: 250 SFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELS 297
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.400
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,549,727
Number of extensions: 71070
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 25
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)