BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16898
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 28/205 (13%)
Query: 63 SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
S+ VG +V + +E+ E + IG + +P C+ V + + +R ++E LAG
Sbjct: 96 SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
++ +T+HKENG +D +KVY++ RL E R+ K+V D+V+D+FAGVGPFSI A
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
+ + A D+NP + L+ +I+LN+ + K PI + VR
Sbjct: 214 KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
+GN RVIMNLP A +++
Sbjct: 258 KGN--------RVIMNLPKFAHKFI 274
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 63 SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
S+ VG +V + +E+ E + IG + +P C+ V + + +R ++E LAG
Sbjct: 96 SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
++ +T+HKENG +D +KVY++ RL E R+ K+V D+V+D+FAGVGPFSI A
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIMKKVSLNDVVVDMFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
+ + A D+NP + L +I+LN+ + K PI + VR
Sbjct: 214 KNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
+GN RVIMNLP A +++
Sbjct: 258 KGN--------RVIMNLPKFAHKFI 274
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 107/205 (52%), Gaps = 28/205 (13%)
Query: 63 SFTSVGHIVHCNLREELIEH-KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
S+ VG +V + +E+ E + IG + +P C+ V + + +R ++E LAG
Sbjct: 96 SYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP-CKGVFRRKSEVKGEFRVRELEHLAG 154
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
++ +T+HKENG +D +KVY++ RL E R+ K+V D+V+D FAGVGPFSI A
Sbjct: 155 ENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIXKKVSLNDVVVDXFAGVGPFSI-AC 213
Query: 182 RRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQS 240
+ + A D+NP + L+ +I+LN+ + K PI + VR
Sbjct: 214 KNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSD----------------VREVDV 257
Query: 241 EGNSTGGTAVARVIMNLPATAVEYV 265
+GN RVI NLP A +++
Sbjct: 258 KGN--------RVIXNLPKFAHKFI 274
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 3/132 (2%)
Query: 93 KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
K C+ ++ I +R +++L GK+ T+HKE GC FK+D +K+ W+ E
Sbjct: 51 KRTKCKAILLYTTQITGEFRTPHVKILYGKETE-TIHKEYGCLFKLDVAKIMWSQGNIEE 109
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQ 210
+R+ E ++V+D+FAG+G F+IP A+ + +V A + NP +Y +L +I+LN+
Sbjct: 110 RKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN 169
Query: 211 VKTPISATQKDA 222
PI A +D
Sbjct: 170 NVIPILADNRDV 181
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 5/134 (3%)
Query: 93 KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
+V +TV+ K H I R ELL G D VT+H ENG +K+D +K+ ++ E
Sbjct: 81 EVLGVKTVLRKGH-IHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIMFSPANVKE 138
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQV 211
R+ K + +LV+D+FAG+G S+P A G A V A + +P ++ +L +I LN +V
Sbjct: 139 RVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KV 196
Query: 212 KTPISATQKDARDF 225
+ +SA D RDF
Sbjct: 197 EDRMSAYNMDNRDF 210
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 93 KVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTE 152
+V +TV+ K H I R ELL G D VT+H ENG +K+D +K+ ++ E
Sbjct: 58 EVLGVKTVLRKGH-IHGETRKPDYELLYGSDT-VTVHVENGIKYKLDVAKIXFSPANVKE 115
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQV 211
R K + +LV+D FAG+G S+P A G A V A + +P ++ +L +I LN +V
Sbjct: 116 RVRXAKVAKPDELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KV 173
Query: 212 KTPISATQKDARDF 225
+ SA D RDF
Sbjct: 174 EDRXSAYNXDNRDF 187
>pdb|4DMG|A Chain A, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
pdb|4DMG|B Chain B, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
Length = 393
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWL-QASIRLNER 209
VR G+ VLDV++ VG F++ AAR+GA A D + ++ L QA++RL R
Sbjct: 212 VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR 262
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 95 PSCETVVNKAHTIDNTYRNFQME-------LLAGKDCMVTMHKENGCTFKMDFSKVYWNS 147
P ETV K NT R+ + E +L GK+ T+ +E F +D
Sbjct: 146 PGIETVFEK-----NTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDXRGQKTGF 200
Query: 148 RLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASI 204
L R+ E V+ GD VLDVF G F+I AA GA V D +P + + +
Sbjct: 201 FLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENA 260
Query: 205 RLN 207
+LN
Sbjct: 261 KLN 263
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 146 NSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205
NS + R E+ EG+ +LD+++GVG F I A+RG V D N + + ++
Sbjct: 274 NSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE 333
Query: 206 LN 207
+N
Sbjct: 334 IN 335
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 146 NSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205
NS + R E+ EG+ +LD+++GVG F I A+RG V D N + + ++
Sbjct: 274 NSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVE 333
Query: 206 LN 207
+N
Sbjct: 334 IN 335
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 102 NKAHTIDNTYRNFQMELLAGKDCMVTMHKENGC--TFKMDFSKVYWNSRLSTEHERVTKE 159
+A + + +R F +L + T H G K+D + + L ER+ E
Sbjct: 177 KEAPPLPSLWRAFSARILGAE---YTFHHLPGVFSAGKVDPASLLL---LEALQERLGPE 230
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
G VLD+ AG G ++P AR GA V + + S LQ + N + + A
Sbjct: 231 GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQ----ALH 286
Query: 220 KDARDFLQTDAR 231
D + L +AR
Sbjct: 287 SDVDEALTEEAR 298
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 102 NKAHTIDNTYRNFQMELLAGKDCMVTMHKENGC--TFKMDFSKVYWNSRLSTEHERVTKE 159
+A + + +R F +L + T H G K+D + + L ER+ E
Sbjct: 177 KEAPPLPSLWRAFSARILGAE---YTFHHLPGVFSAGKVDPASLLL---LEALQERLGPE 230
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
G VLD+ AG G ++P AR GA V + + S LQ + N + + A
Sbjct: 231 GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQ----ALH 286
Query: 220 KDARDFLQTDAR 231
D + L +AR
Sbjct: 287 SDVDEALTEEAR 298
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ 210
+V+ D VLD+F G+G F++P A + A V + P Q + RLN Q
Sbjct: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ 210
+V+ D VLD+F G G F++P A + A V + P Q + RLN Q
Sbjct: 283 DVQPEDRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ 334
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQA---SIRLNERQVKTP 214
++ GD+VLD+ A G ++ + G +AANDL+P A LQ S E +
Sbjct: 147 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQ 206
Query: 215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260
+ T D R +W + EG++ RV++++P T
Sbjct: 207 VRVTSWDGR------------KWGELEGDTYD-----RVLVDVPCT 235
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 22/106 (20%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQA---SIRLNERQVKTP 214
++ GD+VLD+ A G ++ + G +AANDL+P A LQ S E +
Sbjct: 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQ 205
Query: 215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260
+ T D R +W + EG++ RV++++P T
Sbjct: 206 VRVTSWDGR------------KWGELEGDTYD-----RVLVDVPCT 234
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTP 214
++E D +LD+ G G S+ A +G V D+N + +IRL E ++P
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSE-------AIRLAETAARSP 75
>pdb|2ZIF|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIF|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8- Complexed With
S- Adenosyl-L-Methionine
pdb|2ZIG|A Chain A, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
pdb|2ZIG|B Chain B, Crystal Structure Of Ttha0409, Putative Dna Modification
Methylase From Thermus Thermophilus Hb8
Length = 297
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWL 200
GD+VLD FAG G I AAR G +L P YA L
Sbjct: 236 GDVVLDPFAGTGTTLIAAARWGRRALGVELVP-RYAQL 272
>pdb|2ZIE|A Chain A, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
pdb|2ZIE|B Chain B, Crystal Structure Of Ttha0409, Putatative Dna Modification
Methylase From Thermus Thermophilus Hb8-
Selenomethionine Derivative
Length = 297
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWL 200
GD+VLD FAG G I AAR G +L P YA L
Sbjct: 236 GDVVLDPFAGTGTTLIAAARWGRRALGVELVP-RYAQL 272
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 12 FEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSV 67
F DFGEF +K+L++ EV L +N ++++ I P++V +SFT +
Sbjct: 260 FLDFGEFKLKLLQD---------QFEV-LEEENXVGKEVIFGIRPEDVHDASFTHI 305
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna
Binding Response Regulator Protein (Merr) From
Colwellia Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna
Binding Response Regulator Protein (Merr) From
Colwellia Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna
Binding Response Regulator Protein (Merr) From
Colwellia Psychrerythraea 34h
Length = 143
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 8 VIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSV 67
+I+ ++F + + LEN F +A++ + Y+ F A D+L + PD V M V
Sbjct: 13 IIEDDKEFADMLTQFLENL------FPYAKIKIAYNPFDAGDLLHTVKPD-VVMLDLMMV 65
Query: 68 G 68
G
Sbjct: 66 G 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,399,768
Number of Sequences: 62578
Number of extensions: 372111
Number of successful extensions: 1006
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 26
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)