Query psy16898
Match_columns 324
No_of_seqs 414 out of 3578
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 16:30:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2078|consensus 100.0 2.3E-47 5E-52 357.2 20.5 316 3-322 90-440 (495)
2 COG2520 Predicted methyltransf 100.0 3.9E-43 8.4E-48 328.9 22.2 243 47-317 69-338 (341)
3 PF02475 Met_10: Met-10+ like- 100.0 8.1E-42 1.8E-46 300.4 20.2 192 62-274 1-195 (200)
4 PRK15128 23S rRNA m(5)C1962 me 100.0 5.5E-31 1.2E-35 254.5 26.3 254 51-324 102-377 (396)
5 COG1092 Predicted SAM-dependen 100.0 1.7E-30 3.7E-35 248.4 22.3 255 51-324 98-374 (393)
6 PF10672 Methyltrans_SAM: S-ad 100.0 9.2E-29 2E-33 228.3 19.1 238 63-324 18-272 (286)
7 PRK11783 rlmL 23S rRNA m(2)G24 99.9 1.4E-25 2.9E-30 231.8 25.4 235 62-324 430-688 (702)
8 COG2265 TrmA SAM-dependent met 99.9 6.9E-22 1.5E-26 192.6 17.6 211 41-291 181-398 (432)
9 TIGR00479 rumA 23S rRNA (uraci 99.9 8.1E-21 1.8E-25 186.6 21.7 209 41-273 172-388 (431)
10 TIGR02085 meth_trns_rumB 23S r 99.9 1.4E-20 2.9E-25 181.6 20.3 214 41-289 112-334 (374)
11 PRK03522 rumB 23S rRNA methylu 99.9 5.6E-20 1.2E-24 173.6 21.2 204 41-271 52-264 (315)
12 KOG1227|consensus 99.9 1.6E-21 3.5E-26 176.6 9.5 208 60-295 90-303 (351)
13 KOG2187|consensus 99.8 2.7E-18 5.8E-23 166.0 16.3 250 42-322 256-529 (534)
14 PRK05031 tRNA (uracil-5-)-meth 99.8 9.6E-17 2.1E-21 154.2 22.4 198 67-291 115-322 (362)
15 PF05958 tRNA_U5-meth_tr: tRNA 99.7 6.4E-17 1.4E-21 154.9 15.7 135 130-269 161-300 (352)
16 PRK13168 rumA 23S rRNA m(5)U19 99.7 6.4E-16 1.4E-20 152.4 17.7 135 131-290 262-401 (443)
17 TIGR02143 trmA_only tRNA (urac 99.7 2E-15 4.4E-20 144.6 16.6 159 116-292 146-314 (353)
18 PRK04338 N(2),N(2)-dimethylgua 99.6 1.4E-14 3.1E-19 139.8 15.4 118 142-288 31-157 (382)
19 TIGR00308 TRM1 tRNA(guanine-26 99.6 9.1E-15 2E-19 140.5 13.3 132 130-289 2-147 (374)
20 TIGR00095 RNA methyltransferas 99.6 1.8E-14 4E-19 126.3 12.9 85 161-261 48-133 (189)
21 PF13659 Methyltransf_26: Meth 99.6 1.1E-14 2.3E-19 117.0 10.0 94 163-274 1-108 (117)
22 PRK10909 rsmD 16S rRNA m(2)G96 99.6 1.5E-14 3.3E-19 127.7 11.1 111 161-294 52-164 (199)
23 COG2263 Predicted RNA methylas 99.6 4.9E-14 1.1E-18 121.1 13.6 86 162-272 45-137 (198)
24 PF03602 Cons_hypoth95: Conser 99.6 1.9E-14 4.1E-19 125.5 10.6 114 161-292 41-156 (183)
25 TIGR03533 L3_gln_methyl protei 99.5 1.3E-13 2.8E-18 128.4 13.8 107 132-261 88-201 (284)
26 TIGR03704 PrmC_rel_meth putati 99.5 3.4E-13 7.4E-18 123.4 15.0 106 132-261 53-165 (251)
27 PF05175 MTS: Methyltransferas 99.5 1.9E-13 4.2E-18 117.8 12.1 77 162-260 31-109 (170)
28 COG4123 Predicted O-methyltran 99.5 1.3E-13 2.8E-18 124.5 10.1 82 162-261 44-127 (248)
29 COG0742 N6-adenine-specific me 99.5 3.8E-13 8.3E-18 116.3 11.7 113 161-293 42-158 (187)
30 PRK11805 N5-glutamine S-adenos 99.5 6.2E-13 1.3E-17 125.1 13.6 107 132-261 100-213 (307)
31 PF12847 Methyltransf_18: Meth 99.5 7.8E-13 1.7E-17 105.2 11.7 93 162-274 1-104 (112)
32 COG2890 HemK Methylase of poly 99.4 3.8E-13 8.3E-18 124.9 9.8 108 131-263 78-190 (280)
33 TIGR00537 hemK_rel_arch HemK-r 99.4 3.4E-12 7.3E-17 110.7 15.1 124 161-317 18-166 (179)
34 PRK14967 putative methyltransf 99.4 8.6E-12 1.9E-16 112.1 16.3 78 160-260 34-112 (223)
35 PRK14966 unknown domain/N5-glu 99.4 1.4E-12 3E-17 126.0 11.5 107 131-260 220-330 (423)
36 TIGR00536 hemK_fam HemK family 99.4 1.6E-12 3.5E-17 121.1 11.4 108 132-262 81-195 (284)
37 COG2226 UbiE Methylase involve 99.4 2.3E-12 5E-17 116.2 11.8 114 161-303 50-170 (238)
38 TIGR00446 nop2p NOL1/NOP2/sun 99.4 5.2E-12 1.1E-16 116.5 14.1 81 160-261 69-152 (264)
39 PF06325 PrmA: Ribosomal prote 99.4 1.8E-12 3.9E-17 120.8 10.5 139 132-302 128-272 (295)
40 PRK15001 SAM-dependent 23S rib 99.4 1E-11 2.2E-16 119.5 14.5 97 143-260 207-309 (378)
41 PF01209 Ubie_methyltran: ubiE 99.4 3.9E-12 8.4E-17 115.1 10.8 118 160-306 45-170 (233)
42 PF09445 Methyltransf_15: RNA 99.3 2.6E-12 5.7E-17 109.3 8.2 86 164-266 1-86 (163)
43 TIGR00406 prmA ribosomal prote 99.3 1.6E-11 3.5E-16 114.6 14.2 137 131-297 125-267 (288)
44 TIGR01177 conserved hypothetic 99.3 6.8E-12 1.5E-16 119.2 11.9 81 159-260 179-259 (329)
45 TIGR00138 gidB 16S rRNA methyl 99.3 2.3E-11 4.9E-16 106.0 13.6 113 162-305 42-157 (181)
46 COG2264 PrmA Ribosomal protein 99.3 1.8E-11 3.8E-16 113.5 13.2 134 132-294 129-268 (300)
47 PRK14903 16S rRNA methyltransf 99.3 2.5E-11 5.4E-16 119.4 15.1 84 159-262 234-320 (431)
48 PRK01544 bifunctional N5-gluta 99.3 7.5E-12 1.6E-16 125.3 11.6 108 131-261 81-218 (506)
49 TIGR03534 RF_mod_PrmC protein- 99.3 2.4E-11 5.3E-16 110.3 13.3 106 132-261 56-166 (251)
50 PF02353 CMAS: Mycolic acid cy 99.3 1.7E-11 3.7E-16 113.4 12.1 120 160-310 60-194 (273)
51 COG2230 Cfa Cyclopropane fatty 99.3 1.4E-11 3E-16 113.3 11.3 120 160-310 70-200 (283)
52 PRK00107 gidB 16S rRNA methylt 99.3 2.1E-11 4.6E-16 106.7 12.0 105 157-291 40-147 (187)
53 PRK00377 cbiT cobalt-precorrin 99.3 6.6E-11 1.4E-15 104.4 15.3 116 160-302 38-158 (198)
54 PRK09489 rsmC 16S ribosomal RN 99.3 5.5E-11 1.2E-15 113.5 15.5 132 129-293 162-307 (342)
55 PRK07402 precorrin-6B methylas 99.3 6.6E-11 1.4E-15 104.2 14.2 105 160-292 38-145 (196)
56 COG2813 RsmC 16S RNA G1207 met 99.3 3.7E-11 7.9E-16 110.9 12.7 105 132-260 127-235 (300)
57 PRK14968 putative methyltransf 99.3 4.7E-11 1E-15 103.5 12.2 79 161-260 22-101 (188)
58 PF13847 Methyltransf_31: Meth 99.3 4.1E-11 9E-16 101.0 11.1 103 161-291 2-112 (152)
59 COG2227 UbiG 2-polyprenyl-3-me 99.3 3.5E-11 7.6E-16 107.4 10.2 100 162-292 59-164 (243)
60 PRK14902 16S rRNA methyltransf 99.3 8.6E-11 1.9E-15 116.1 14.0 81 160-260 248-331 (444)
61 PRK00517 prmA ribosomal protei 99.2 1.6E-10 3.4E-15 105.8 14.7 134 134-303 88-227 (250)
62 PRK00121 trmB tRNA (guanine-N( 99.2 7.4E-11 1.6E-15 104.5 11.9 106 162-293 40-160 (202)
63 PRK11207 tellurite resistance 99.2 8.1E-11 1.8E-15 103.8 11.9 92 161-274 29-127 (197)
64 PRK14904 16S rRNA methyltransf 99.2 9.2E-11 2E-15 115.9 13.4 114 160-295 248-383 (445)
65 PRK12335 tellurite resistance 99.2 1.3E-10 2.8E-15 108.4 13.7 90 162-274 120-216 (287)
66 COG2242 CobL Precorrin-6B meth 99.2 2.8E-10 6.1E-15 98.2 14.2 115 160-303 32-149 (187)
67 PRK08287 cobalt-precorrin-6Y C 99.2 1.4E-10 2.9E-15 101.4 12.5 114 160-304 29-146 (187)
68 PRK10901 16S rRNA methyltransf 99.2 1.4E-10 3E-15 114.0 13.9 82 160-261 242-325 (427)
69 PRK11036 putative S-adenosyl-L 99.2 1.2E-10 2.7E-15 106.6 12.2 101 161-288 43-148 (255)
70 PRK14901 16S rRNA methyltransf 99.2 1.4E-10 3.1E-15 114.2 13.0 85 160-261 250-337 (434)
71 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.2E-10 2.7E-15 102.4 11.3 105 162-292 16-135 (194)
72 PTZ00338 dimethyladenosine tra 99.2 5.7E-11 1.2E-15 111.1 9.5 104 133-260 7-112 (294)
73 PF01170 UPF0020: Putative RNA 99.2 4.3E-11 9.3E-16 104.1 8.0 82 159-260 25-117 (179)
74 TIGR02469 CbiT precorrin-6Y C5 99.2 1.8E-10 3.8E-15 92.8 11.0 95 160-274 17-115 (124)
75 TIGR00477 tehB tellurite resis 99.2 2.9E-10 6.3E-15 100.1 13.3 90 162-274 30-126 (195)
76 PLN02396 hexaprenyldihydroxybe 99.2 1.6E-10 3.5E-15 109.2 12.3 101 162-291 131-237 (322)
77 PRK09328 N5-glutamine S-adenos 99.2 2.6E-10 5.7E-15 105.2 12.9 107 132-262 76-188 (275)
78 smart00650 rADc Ribosomal RNA 99.2 5.7E-11 1.2E-15 102.2 7.9 78 160-260 11-88 (169)
79 TIGR00080 pimt protein-L-isoas 99.2 6.6E-11 1.4E-15 105.8 8.0 79 160-259 75-156 (215)
80 PRK11727 23S rRNA mA1618 methy 99.2 1E-10 2.2E-15 110.3 9.5 84 162-261 114-201 (321)
81 TIGR02752 MenG_heptapren 2-hep 99.2 6.1E-10 1.3E-14 100.2 14.1 112 153-293 34-155 (231)
82 PRK15451 tRNA cmo(5)U34 methyl 99.2 3.7E-10 7.9E-15 103.1 12.5 100 160-289 54-164 (247)
83 TIGR00563 rsmB ribosomal RNA s 99.1 3.4E-10 7.3E-15 111.3 12.3 84 160-261 236-321 (426)
84 COG1041 Predicted DNA modifica 99.1 9.3E-11 2E-15 110.1 7.8 82 158-260 193-275 (347)
85 COG2521 Predicted archaeal met 99.1 9.4E-11 2E-15 103.7 6.7 111 129-262 104-218 (287)
86 PLN02244 tocopherol O-methyltr 99.1 3.4E-10 7.5E-15 108.1 11.1 102 161-291 117-225 (340)
87 COG2519 GCD14 tRNA(1-methylade 99.1 3.8E-10 8.2E-15 101.5 10.3 104 160-293 92-199 (256)
88 PRK13944 protein-L-isoaspartat 99.1 2.5E-10 5.4E-15 101.3 9.1 80 160-259 70-152 (205)
89 PLN02672 methionine S-methyltr 99.1 1.8E-10 3.9E-15 122.7 9.1 110 131-261 84-215 (1082)
90 PLN02781 Probable caffeoyl-CoA 99.1 2.1E-09 4.6E-14 97.4 14.9 111 156-288 62-177 (234)
91 PRK14896 ksgA 16S ribosomal RN 99.1 2.2E-10 4.8E-15 105.3 8.3 76 160-260 27-102 (258)
92 TIGR03840 TMPT_Se_Te thiopurin 99.1 1.4E-09 3.1E-14 97.2 13.2 134 161-319 33-190 (213)
93 COG1867 TRM1 N2,N2-dimethylgua 99.1 6E-10 1.3E-14 104.8 11.1 112 143-274 28-147 (380)
94 KOG1540|consensus 99.1 7.8E-10 1.7E-14 99.2 10.8 118 161-306 99-231 (296)
95 PHA03412 putative methyltransf 99.1 2.1E-10 4.6E-15 103.0 7.1 72 162-260 49-125 (241)
96 PF08704 GCD14: tRNA methyltra 99.1 5.6E-10 1.2E-14 101.6 9.3 118 159-303 37-160 (247)
97 PF03848 TehB: Tellurite resis 99.1 1.4E-09 3.1E-14 95.2 11.3 100 162-292 30-136 (192)
98 KOG2904|consensus 99.1 6.1E-10 1.3E-14 100.7 9.0 101 145-260 124-233 (328)
99 PLN02233 ubiquinone biosynthes 99.1 1.6E-09 3.4E-14 99.8 12.0 107 160-295 71-188 (261)
100 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.5E-09 3.2E-14 104.5 11.8 102 162-290 122-236 (390)
101 PRK13255 thiopurine S-methyltr 99.0 2.1E-09 4.6E-14 96.4 12.1 92 161-274 36-148 (218)
102 COG0116 Predicted N6-adenine-s 99.0 8.6E-10 1.9E-14 105.0 10.0 81 160-260 189-310 (381)
103 PLN02476 O-methyltransferase 99.0 5.7E-09 1.2E-13 96.4 15.1 112 155-288 111-227 (278)
104 KOG3420|consensus 99.0 2.1E-10 4.6E-15 94.4 4.9 87 162-270 48-141 (185)
105 PRK04266 fibrillarin; Provisio 99.0 2.1E-09 4.5E-14 96.9 11.7 100 160-287 70-174 (226)
106 PHA03411 putative methyltransf 99.0 7.2E-10 1.6E-14 101.8 8.7 91 142-261 46-138 (279)
107 TIGR00740 methyltransferase, p 99.0 3.1E-09 6.8E-14 96.3 12.8 104 160-293 51-165 (239)
108 PRK04457 spermidine synthase; 99.0 5.1E-09 1.1E-13 96.5 14.1 105 161-292 65-180 (262)
109 PRK00274 ksgA 16S ribosomal RN 99.0 5.7E-10 1.2E-14 103.3 7.6 86 160-269 40-126 (272)
110 TIGR02021 BchM-ChlM magnesium 99.0 3.1E-09 6.8E-14 95.0 11.8 63 161-225 54-116 (219)
111 KOG1270|consensus 99.0 5.7E-10 1.2E-14 100.5 6.9 85 163-274 90-188 (282)
112 PRK13942 protein-L-isoaspartat 99.0 1E-09 2.3E-14 97.9 8.1 77 160-257 74-153 (212)
113 PTZ00098 phosphoethanolamine N 99.0 2.8E-09 6.1E-14 98.3 11.1 119 144-293 32-160 (263)
114 PRK00312 pcm protein-L-isoaspa 99.0 2.6E-09 5.7E-14 95.0 9.7 100 160-290 76-176 (212)
115 PRK11933 yebU rRNA (cytosine-C 99.0 1.1E-08 2.3E-13 101.4 14.7 82 160-261 111-195 (470)
116 KOG2730|consensus 99.0 1.7E-09 3.6E-14 95.0 7.7 86 162-263 94-179 (263)
117 PRK11783 rlmL 23S rRNA m(2)G24 99.0 2.4E-09 5.3E-14 111.3 10.3 82 161-260 189-314 (702)
118 PF13649 Methyltransf_25: Meth 99.0 4.3E-09 9.3E-14 82.5 9.1 86 166-273 1-99 (101)
119 PRK11873 arsM arsenite S-adeno 98.9 8.4E-09 1.8E-13 95.3 11.8 103 159-291 74-185 (272)
120 PRK00811 spermidine synthase; 98.9 1.8E-08 3.9E-13 93.9 14.0 107 161-292 75-194 (283)
121 PRK10258 biotin biosynthesis p 98.9 7.6E-09 1.6E-13 94.4 11.1 109 156-298 34-149 (251)
122 PF01596 Methyltransf_3: O-met 98.9 2.8E-08 6.2E-13 88.2 14.2 107 160-288 43-154 (205)
123 PRK11188 rrmJ 23S rRNA methylt 98.9 1.6E-08 3.4E-13 90.2 11.9 111 160-303 49-179 (209)
124 PRK10742 putative methyltransf 98.9 1.1E-08 2.4E-13 92.4 10.3 84 160-260 84-175 (250)
125 PRK13943 protein-L-isoaspartat 98.9 9.3E-09 2E-13 97.3 9.9 77 160-257 78-157 (322)
126 PTZ00146 fibrillarin; Provisio 98.9 2.4E-08 5.2E-13 92.6 12.3 115 145-287 110-235 (293)
127 PF02005 TRM: N2,N2-dimethylgu 98.9 1.9E-08 4E-13 97.1 11.3 115 141-274 18-147 (377)
128 PLN02585 magnesium protoporphy 98.8 2.3E-08 4.9E-13 94.4 11.4 61 162-224 144-208 (315)
129 TIGR00755 ksgA dimethyladenosi 98.8 1E-08 2.2E-13 93.9 8.7 90 155-269 20-115 (253)
130 PRK11705 cyclopropane fatty ac 98.8 2.4E-08 5.1E-13 96.9 11.6 99 160-293 165-271 (383)
131 PRK14103 trans-aconitate 2-met 98.8 1.6E-08 3.4E-13 92.7 9.5 92 161-289 28-126 (255)
132 PRK07580 Mg-protoporphyrin IX 98.8 3.7E-08 8E-13 88.3 11.6 60 161-222 62-121 (230)
133 PF08241 Methyltransf_11: Meth 98.8 1E-08 2.2E-13 78.1 6.5 84 167-274 1-90 (95)
134 PRK03612 spermidine synthase; 98.8 4.3E-08 9.4E-13 98.7 12.4 107 161-292 296-418 (521)
135 PRK06922 hypothetical protein; 98.8 7.2E-08 1.6E-12 97.8 13.7 79 161-259 417-497 (677)
136 PLN02336 phosphoethanolamine N 98.8 5.8E-08 1.3E-12 96.7 12.5 102 160-292 264-372 (475)
137 smart00828 PKS_MT Methyltransf 98.8 2.9E-08 6.2E-13 88.8 9.4 98 164-291 1-106 (224)
138 PRK00216 ubiE ubiquinone/menaq 98.8 6.2E-08 1.3E-12 86.9 11.4 103 161-292 50-161 (239)
139 PRK01683 trans-aconitate 2-met 98.8 3.4E-08 7.3E-13 90.4 9.8 95 160-289 29-130 (258)
140 COG0144 Sun tRNA and rRNA cyto 98.8 6.7E-08 1.4E-12 92.8 12.1 86 159-262 153-242 (355)
141 PF01135 PCMT: Protein-L-isoas 98.8 2.7E-08 5.9E-13 88.6 8.6 78 160-258 70-150 (209)
142 COG2518 Pcm Protein-L-isoaspar 98.8 4.5E-08 9.8E-13 86.3 9.6 81 155-256 63-145 (209)
143 PF07021 MetW: Methionine bios 98.8 2E-08 4.4E-13 87.2 7.2 77 154-256 5-82 (193)
144 PRK15068 tRNA mo(5)U34 methylt 98.8 6.2E-08 1.4E-12 91.9 11.1 100 162-290 122-227 (322)
145 TIGR01983 UbiG ubiquinone bios 98.8 1.1E-07 2.4E-12 84.9 12.2 101 162-290 45-150 (224)
146 cd02440 AdoMet_MTases S-adenos 98.8 5.7E-08 1.2E-12 73.9 8.9 86 165-270 1-92 (107)
147 PRK01581 speE spermidine synth 98.8 8.4E-08 1.8E-12 91.4 11.8 106 160-290 148-269 (374)
148 COG0030 KsgA Dimethyladenosine 98.7 3.1E-08 6.7E-13 90.3 8.5 84 155-260 21-106 (259)
149 PF02390 Methyltransf_4: Putat 98.7 8.9E-08 1.9E-12 84.4 10.8 99 164-288 19-132 (195)
150 TIGR03438 probable methyltrans 98.7 1.6E-07 3.4E-12 88.3 13.2 69 156-226 57-128 (301)
151 TIGR00452 methyltransferase, p 98.7 1.1E-07 2.4E-12 89.7 11.7 100 161-290 120-226 (314)
152 TIGR03587 Pse_Me-ase pseudamin 98.7 7E-08 1.5E-12 85.7 9.8 60 157-224 38-99 (204)
153 KOG3191|consensus 98.7 3.2E-07 6.8E-12 78.6 13.0 120 163-305 44-184 (209)
154 PF10294 Methyltransf_16: Puta 98.7 2.1E-07 4.5E-12 80.5 11.8 123 160-304 43-172 (173)
155 TIGR00417 speE spermidine synt 98.7 2.2E-07 4.7E-12 86.0 12.5 106 162-292 72-189 (270)
156 TIGR02716 C20_methyl_CrtF C-20 98.7 1.1E-07 2.4E-12 89.5 10.7 102 160-292 147-257 (306)
157 PRK13256 thiopurine S-methyltr 98.7 1.9E-07 4.1E-12 84.0 11.5 136 161-319 42-200 (226)
158 PLN02366 spermidine synthase 98.7 2.9E-07 6.3E-12 86.7 13.1 98 161-274 90-199 (308)
159 PRK05785 hypothetical protein; 98.7 1.9E-07 4.1E-12 84.2 11.3 68 161-257 50-118 (226)
160 KOG0820|consensus 98.7 3.7E-08 8E-13 89.2 6.4 105 131-259 27-133 (315)
161 PRK05134 bifunctional 3-demeth 98.7 3E-07 6.4E-12 82.8 12.4 93 161-274 47-144 (233)
162 PF02384 N6_Mtase: N-6 DNA Met 98.6 2.9E-08 6.4E-13 93.4 5.2 85 160-262 44-138 (311)
163 TIGR00438 rrmJ cell division p 98.6 3.8E-07 8.2E-12 79.7 11.8 111 158-301 28-158 (188)
164 PLN02336 phosphoethanolamine N 98.6 1.3E-07 2.7E-12 94.3 9.8 87 152-259 25-113 (475)
165 PLN03075 nicotianamine synthas 98.6 1.9E-07 4.1E-12 86.9 10.2 93 162-274 123-226 (296)
166 COG4122 Predicted O-methyltran 98.6 7.5E-07 1.6E-11 79.5 12.9 112 155-292 52-169 (219)
167 PF05401 NodS: Nodulation prot 98.6 1.8E-07 3.8E-12 81.7 8.4 95 164-290 45-147 (201)
168 KOG1499|consensus 98.6 6.4E-08 1.4E-12 90.8 6.0 63 160-225 58-121 (346)
169 PF13489 Methyltransf_23: Meth 98.6 5.1E-07 1.1E-11 75.7 10.9 93 160-292 20-118 (161)
170 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 4.5E-07 9.8E-12 80.4 11.0 100 161-292 38-146 (223)
171 PF05185 PRMT5: PRMT5 arginine 98.6 1.5E-07 3.2E-12 92.9 8.4 91 163-274 187-290 (448)
172 PLN02589 caffeoyl-CoA O-methyl 98.6 1.6E-06 3.4E-11 79.2 14.3 108 160-288 77-189 (247)
173 PF05724 TPMT: Thiopurine S-me 98.6 3.2E-07 6.9E-12 82.3 9.2 136 160-320 35-194 (218)
174 PRK08317 hypothetical protein; 98.6 7.8E-07 1.7E-11 79.5 11.7 100 160-289 17-124 (241)
175 COG4076 Predicted RNA methylas 98.5 4.7E-08 1E-12 84.1 3.3 62 163-227 33-94 (252)
176 PLN02490 MPBQ/MSBQ methyltrans 98.5 3E-07 6.6E-12 87.5 9.1 73 161-257 112-186 (340)
177 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.5 1E-06 2.2E-11 82.1 12.0 83 160-261 83-168 (283)
178 PRK06202 hypothetical protein; 98.5 1.7E-07 3.7E-12 84.5 6.5 72 161-256 59-136 (232)
179 TIGR02072 BioC biotin biosynth 98.5 6.6E-07 1.4E-11 80.1 9.9 99 162-293 34-139 (240)
180 PRK00050 16S rRNA m(4)C1402 me 98.5 8.2E-07 1.8E-11 82.9 10.7 92 160-270 17-111 (296)
181 PF08242 Methyltransf_12: Meth 98.5 1.2E-08 2.6E-13 79.4 -1.4 71 167-256 1-73 (99)
182 PRK11088 rrmA 23S rRNA methylt 98.5 4.8E-07 1E-11 83.7 7.7 95 162-293 85-185 (272)
183 TIGR02081 metW methionine bios 98.4 5.9E-07 1.3E-11 78.8 7.7 78 155-258 6-84 (194)
184 COG0220 Predicted S-adenosylme 98.4 1.8E-06 3.9E-11 77.8 10.6 99 164-288 50-163 (227)
185 PRK04148 hypothetical protein; 98.4 1.4E-06 3.1E-11 71.8 8.5 71 162-259 16-88 (134)
186 KOG1500|consensus 98.4 5.5E-07 1.2E-11 83.8 6.7 108 162-292 177-292 (517)
187 PLN02823 spermine synthase 98.4 3.6E-06 7.8E-11 80.2 11.5 102 162-288 103-219 (336)
188 PF00398 RrnaAD: Ribosomal RNA 98.3 2E-06 4.4E-11 79.2 9.0 96 155-270 21-119 (262)
189 KOG1271|consensus 98.3 7.5E-07 1.6E-11 76.4 5.6 58 165-224 70-129 (227)
190 COG4106 Tam Trans-aconitate me 98.3 1.2E-06 2.7E-11 77.1 7.1 100 161-296 29-136 (257)
191 TIGR02987 met_A_Alw26 type II 98.3 8.2E-07 1.8E-11 89.7 6.7 84 162-261 31-124 (524)
192 PF01564 Spermine_synth: Sperm 98.3 9.5E-06 2.1E-10 74.1 12.4 133 161-317 75-223 (246)
193 smart00138 MeTrc Methyltransfe 98.3 1.7E-06 3.8E-11 79.8 6.8 43 162-204 99-152 (264)
194 KOG1122|consensus 98.2 8.9E-06 1.9E-10 78.0 10.2 83 160-261 239-324 (460)
195 TIGR01444 fkbM_fam methyltrans 98.2 3.1E-06 6.7E-11 70.1 6.3 57 165-224 1-59 (143)
196 PF05971 Methyltransf_10: Prot 98.2 2.9E-06 6.3E-11 79.1 5.7 82 163-260 103-188 (299)
197 KOG2671|consensus 98.1 1.5E-06 3.3E-11 81.2 3.3 103 145-266 188-301 (421)
198 PF08003 Methyltransf_9: Prote 98.1 1.9E-05 4.1E-10 73.4 10.1 92 162-274 115-212 (315)
199 KOG2915|consensus 98.1 2E-05 4.2E-10 71.8 9.8 95 160-273 103-201 (314)
200 PF04816 DUF633: Family of unk 98.1 1.6E-05 3.4E-10 70.7 8.7 61 166-228 1-63 (205)
201 TIGR00478 tly hemolysin TlyA f 98.1 1E-05 2.2E-10 73.0 7.5 54 146-199 56-113 (228)
202 PRK01544 bifunctional N5-gluta 98.1 2.7E-05 5.8E-10 78.3 11.0 99 162-287 347-460 (506)
203 KOG1253|consensus 98.1 3.5E-06 7.5E-11 82.2 4.1 101 158-274 105-209 (525)
204 KOG4300|consensus 98.1 1.9E-05 4.1E-10 69.2 8.2 113 165-305 79-198 (252)
205 COG3897 Predicted methyltransf 97.9 4.7E-06 1E-10 72.4 2.3 59 162-224 79-138 (218)
206 COG3963 Phospholipid N-methylt 97.9 0.00029 6.3E-09 59.9 12.1 109 156-293 40-160 (194)
207 PHA01634 hypothetical protein 97.8 3E-05 6.5E-10 62.8 5.5 47 162-208 28-75 (156)
208 KOG1541|consensus 97.8 3E-05 6.4E-10 68.7 5.5 40 163-202 51-90 (270)
209 COG4262 Predicted spermidine s 97.8 0.0004 8.7E-09 65.8 13.1 98 160-274 287-400 (508)
210 KOG1663|consensus 97.8 0.00012 2.7E-09 65.2 9.3 84 162-259 73-159 (237)
211 PF01728 FtsJ: FtsJ-like methy 97.8 3.5E-05 7.6E-10 66.7 5.5 118 162-304 23-154 (181)
212 PF08123 DOT1: Histone methyla 97.8 0.00015 3.3E-09 64.3 9.3 64 160-225 40-113 (205)
213 COG0293 FtsJ 23S rRNA methylas 97.8 0.00042 9.2E-09 61.2 11.9 124 160-309 43-179 (205)
214 PRK11760 putative 23S rRNA C24 97.7 7.3E-05 1.6E-09 70.7 7.2 83 160-270 209-291 (357)
215 COG0421 SpeE Spermidine syntha 97.7 0.00046 1E-08 64.2 12.2 100 164-288 78-189 (282)
216 cd00315 Cyt_C5_DNA_methylase C 97.7 4.2E-05 9.1E-10 71.0 5.3 72 165-261 2-74 (275)
217 PRK11524 putative methyltransf 97.7 8.8E-05 1.9E-09 69.1 7.0 51 156-206 201-252 (284)
218 KOG3010|consensus 97.7 5.9E-05 1.3E-09 67.6 5.4 104 158-292 28-140 (261)
219 PF01555 N6_N4_Mtase: DNA meth 97.7 9.1E-05 2E-09 65.6 6.7 43 160-202 189-231 (231)
220 TIGR00006 S-adenosyl-methyltra 97.6 0.00038 8.3E-09 65.3 9.2 94 160-270 18-113 (305)
221 COG2384 Predicted SAM-dependen 97.5 0.0002 4.3E-09 63.6 6.3 70 156-227 10-81 (226)
222 PRK13699 putative methylase; P 97.5 0.00028 6E-09 63.7 7.4 52 156-207 156-208 (227)
223 PF03291 Pox_MCEL: mRNA cappin 97.5 0.00025 5.5E-09 67.5 7.4 101 162-274 62-179 (331)
224 KOG1661|consensus 97.5 0.00025 5.5E-09 62.4 6.3 96 159-274 79-186 (237)
225 PF02527 GidB: rRNA small subu 97.5 0.0019 4.1E-08 56.4 11.5 99 160-288 45-147 (184)
226 COG4976 Predicted methyltransf 97.4 8.8E-05 1.9E-09 66.1 2.9 72 164-259 127-200 (287)
227 COG0286 HsdM Type I restrictio 97.4 0.00012 2.6E-09 73.3 4.2 102 144-263 168-278 (489)
228 PF13679 Methyltransf_32: Meth 97.4 0.00043 9.4E-09 57.6 6.9 64 161-224 24-93 (141)
229 PF01269 Fibrillarin: Fibrilla 97.4 0.0032 7E-08 56.2 12.6 110 145-274 51-171 (229)
230 PF01861 DUF43: Protein of unk 97.4 0.0016 3.4E-08 58.8 10.7 79 162-261 44-124 (243)
231 PF00145 DNA_methylase: C-5 cy 97.4 0.00038 8.2E-09 65.3 6.9 70 165-260 2-72 (335)
232 PF04445 SAM_MT: Putative SAM- 97.4 0.00076 1.6E-08 60.9 7.9 81 160-258 71-160 (234)
233 PF00891 Methyltransf_2: O-met 97.3 0.00078 1.7E-08 61.0 7.8 95 160-291 98-201 (241)
234 KOG2361|consensus 97.3 0.0003 6.4E-09 63.2 4.8 92 165-274 74-176 (264)
235 COG1889 NOP1 Fibrillarin-like 97.3 0.013 2.9E-07 51.5 14.4 148 145-321 54-217 (231)
236 KOG2198|consensus 97.3 0.00084 1.8E-08 63.8 7.6 142 159-312 152-322 (375)
237 PF13578 Methyltransf_24: Meth 97.3 0.0009 1.9E-08 52.5 6.6 96 167-289 1-105 (106)
238 KOG2899|consensus 97.2 0.00049 1.1E-08 61.9 5.2 55 152-206 47-104 (288)
239 COG0357 GidB Predicted S-adeno 97.2 0.0046 9.9E-08 55.2 11.4 106 163-296 68-175 (215)
240 KOG1501|consensus 97.1 0.00081 1.7E-08 65.1 5.6 54 165-220 69-123 (636)
241 TIGR00675 dcm DNA-methyltransf 97.1 0.0009 2E-08 63.3 5.8 69 166-260 1-70 (315)
242 COG1189 Predicted rRNA methyla 97.0 0.0028 6E-08 57.0 8.0 89 161-273 78-170 (245)
243 PF06080 DUF938: Protein of un 97.0 0.0028 6.1E-08 56.0 7.7 132 159-310 21-169 (204)
244 PF01795 Methyltransf_5: MraW 97.0 0.0027 5.8E-08 59.7 7.9 106 148-270 7-114 (310)
245 TIGR03439 methyl_EasF probable 97.0 0.012 2.6E-07 55.7 12.4 105 156-274 70-190 (319)
246 PRK00536 speE spermidine synth 96.9 0.011 2.3E-07 54.6 10.9 102 161-292 71-174 (262)
247 KOG1975|consensus 96.9 0.0028 6E-08 59.3 6.7 66 160-226 115-185 (389)
248 COG0270 Dcm Site-specific DNA 96.8 0.0026 5.6E-08 60.6 6.2 75 164-261 4-79 (328)
249 PF11599 AviRa: RRNA methyltra 96.8 0.0028 6.1E-08 56.1 5.6 62 146-207 32-100 (246)
250 PRK10458 DNA cytosine methylas 96.8 0.0021 4.5E-08 64.0 5.4 58 163-225 88-146 (467)
251 PLN02232 ubiquinone biosynthes 96.7 0.0074 1.6E-07 51.3 7.6 81 188-295 1-87 (160)
252 PF05219 DREV: DREV methyltran 96.6 0.012 2.7E-07 53.7 8.9 83 162-274 94-181 (265)
253 PF05891 Methyltransf_PK: AdoM 96.6 0.0088 1.9E-07 53.3 7.6 101 163-292 56-164 (218)
254 KOG4058|consensus 96.4 0.013 2.9E-07 49.0 7.3 68 156-225 64-134 (199)
255 COG0275 Predicted S-adenosylme 96.4 0.025 5.4E-07 52.7 9.7 85 160-261 21-108 (314)
256 COG1568 Predicted methyltransf 96.4 0.016 3.4E-07 53.3 8.2 86 162-268 152-239 (354)
257 PF12147 Methyltransf_20: Puta 96.3 0.019 4.1E-07 53.3 8.4 61 163-225 136-200 (311)
258 PF06962 rRNA_methylase: Putat 96.3 0.038 8.1E-07 46.0 9.4 85 186-296 1-99 (140)
259 KOG4589|consensus 95.8 0.077 1.7E-06 46.2 9.1 119 160-303 67-198 (232)
260 TIGR00497 hsdM type I restrict 95.6 0.024 5.1E-07 57.2 6.0 82 162-261 217-305 (501)
261 PF03059 NAS: Nicotianamine sy 95.5 0.047 1E-06 50.6 7.3 91 164-274 122-223 (276)
262 COG3129 Predicted SAM-dependen 95.5 0.014 3.1E-07 52.3 3.6 83 162-260 78-164 (292)
263 PF02086 MethyltransfD12: D12 95.4 0.021 4.5E-07 52.0 4.5 47 155-201 11-59 (260)
264 PF07091 FmrO: Ribosomal RNA m 95.1 0.061 1.3E-06 49.0 6.6 61 160-224 103-165 (251)
265 COG0863 DNA modification methy 95.1 0.068 1.5E-06 49.6 7.1 49 160-208 220-268 (302)
266 PRK10611 chemotaxis methyltran 94.8 0.038 8.3E-07 51.6 4.7 40 164-203 117-166 (287)
267 COG1064 AdhP Zn-dependent alco 94.8 0.34 7.3E-06 46.3 10.8 44 159-202 163-208 (339)
268 COG1743 Adenine-specific DNA m 94.5 0.032 6.8E-07 57.8 3.3 50 158-207 86-135 (875)
269 PF09243 Rsm22: Mitochondrial 93.8 0.11 2.4E-06 48.2 5.4 44 162-205 33-79 (274)
270 KOG1596|consensus 93.8 0.25 5.5E-06 44.7 7.3 80 160-259 154-236 (317)
271 KOG1269|consensus 93.4 0.083 1.8E-06 51.0 3.9 107 159-293 107-219 (364)
272 COG0500 SmtA SAM-dependent met 93.3 0.26 5.7E-06 38.6 6.1 55 166-224 52-109 (257)
273 KOG1709|consensus 93.1 1.4 2.9E-05 39.5 10.5 94 161-274 100-199 (271)
274 PF05050 Methyltransf_21: Meth 92.9 0.21 4.6E-06 41.5 5.3 50 168-219 1-58 (167)
275 KOG2352|consensus 92.9 0.24 5.3E-06 49.0 6.3 127 162-310 295-439 (482)
276 PF04378 RsmJ: Ribosomal RNA s 92.6 0.2 4.3E-06 45.7 5.0 85 156-260 52-136 (245)
277 KOG2940|consensus 92.0 0.14 3E-06 46.2 3.0 57 162-223 72-129 (325)
278 KOG2912|consensus 92.0 0.16 3.5E-06 47.7 3.6 80 167-262 107-191 (419)
279 KOG2078|consensus 92.0 0.025 5.3E-07 54.9 -1.8 191 12-208 246-458 (495)
280 KOG2651|consensus 91.9 0.42 9.1E-06 46.0 6.2 41 162-202 153-194 (476)
281 PF07279 DUF1442: Protein of u 91.5 2.9 6.4E-05 37.3 10.8 64 163-228 42-112 (218)
282 PF05148 Methyltransf_8: Hypot 91.3 0.3 6.6E-06 43.4 4.5 99 161-304 71-175 (219)
283 PF03141 Methyltransf_29: Puta 91.2 0.45 9.7E-06 47.4 5.9 38 165-202 120-160 (506)
284 COG2961 ComJ Protein involved 91.1 0.44 9.5E-06 43.4 5.3 86 157-262 84-169 (279)
285 KOG1201|consensus 91.1 1.8 4E-05 40.4 9.5 58 162-224 37-97 (300)
286 PF01739 CheR: CheR methyltran 90.7 0.42 9.2E-06 42.1 4.9 39 164-202 33-82 (196)
287 PF07942 N2227: N2227-like pro 90.7 0.5 1.1E-05 43.7 5.5 39 163-201 57-95 (270)
288 PRK11524 putative methyltransf 90.4 0.47 1E-05 44.1 5.1 31 214-260 8-38 (284)
289 COG3392 Adenine-specific DNA m 90.3 0.22 4.8E-06 45.6 2.7 37 159-195 24-60 (330)
290 KOG2920|consensus 89.9 0.27 5.8E-06 45.5 2.9 39 160-198 114-153 (282)
291 KOG1099|consensus 89.6 1.5 3.3E-05 39.5 7.3 113 163-299 42-173 (294)
292 KOG0024|consensus 89.4 0.66 1.4E-05 43.9 5.2 45 158-202 165-212 (354)
293 KOG3924|consensus 89.4 1.7 3.7E-05 42.1 8.0 69 156-224 184-262 (419)
294 KOG2793|consensus 89.3 0.74 1.6E-05 42.0 5.3 46 162-208 86-132 (248)
295 KOG3115|consensus 89.0 0.7 1.5E-05 40.9 4.7 69 162-231 60-135 (249)
296 KOG0822|consensus 88.8 0.48 1E-05 47.5 4.0 61 164-227 369-435 (649)
297 PRK01747 mnmC bifunctional tRN 88.6 2.8 6.1E-05 43.7 9.8 102 164-292 59-209 (662)
298 COG1352 CheR Methylase of chem 88.6 0.9 1.9E-05 42.0 5.5 66 137-202 65-147 (268)
299 KOG3201|consensus 87.5 1.8 4E-05 37.0 6.1 47 162-208 29-78 (201)
300 KOG2360|consensus 86.5 0.65 1.4E-05 44.8 3.3 62 161-225 212-276 (413)
301 PF00107 ADH_zinc_N: Zinc-bind 85.2 2.2 4.9E-05 33.9 5.5 91 172-292 1-92 (130)
302 PRK08945 putative oxoacyl-(acy 83.8 13 0.00028 33.0 10.4 57 162-222 11-71 (247)
303 KOG0919|consensus 83.7 0.81 1.8E-05 41.5 2.4 41 164-204 4-47 (338)
304 PRK13699 putative methylase; P 83.6 2.1 4.5E-05 38.6 5.1 30 215-260 2-31 (227)
305 KOG3987|consensus 83.0 0.26 5.7E-06 43.7 -1.0 41 162-202 112-152 (288)
306 COG1062 AdhC Zn-dependent alco 82.8 2.8 6.1E-05 40.0 5.7 44 159-202 182-228 (366)
307 KOG1098|consensus 82.7 1.1 2.3E-05 45.9 3.0 36 159-194 41-79 (780)
308 PRK06172 short chain dehydroge 82.4 18 0.00039 32.1 10.8 58 162-224 6-67 (253)
309 PRK06124 gluconate 5-dehydroge 82.1 23 0.00051 31.4 11.5 58 162-224 10-71 (256)
310 PRK06194 hypothetical protein; 82.1 13 0.00029 33.7 10.0 57 163-224 6-66 (287)
311 PF10237 N6-adenineMlase: Prob 82.0 4.9 0.00011 34.3 6.5 80 160-268 23-105 (162)
312 PRK06949 short chain dehydroge 81.9 20 0.00043 31.8 10.9 58 162-224 8-69 (258)
313 KOG3045|consensus 81.9 2.5 5.5E-05 38.9 4.8 30 162-194 180-209 (325)
314 PRK07063 short chain dehydroge 81.8 22 0.00048 31.7 11.2 60 162-224 6-69 (260)
315 PF07757 AdoMet_MTase: Predict 81.8 1.2 2.7E-05 35.3 2.5 33 163-195 59-91 (112)
316 PRK05867 short chain dehydroge 81.5 16 0.00034 32.6 10.1 58 162-224 8-69 (253)
317 PRK09424 pntA NAD(P) transhydr 80.6 3.2 7E-05 42.0 5.6 42 161-202 163-206 (509)
318 PRK07890 short chain dehydroge 80.5 17 0.00037 32.2 10.0 58 162-224 4-65 (258)
319 PRK07102 short chain dehydroge 80.4 13 0.00028 32.9 9.1 58 164-225 2-63 (243)
320 PRK08862 short chain dehydroge 80.3 18 0.00039 32.1 9.9 59 162-224 4-65 (227)
321 PRK05854 short chain dehydroge 80.1 24 0.00051 33.0 11.1 61 162-225 13-77 (313)
322 PF02254 TrkA_N: TrkA-N domain 80.1 12 0.00026 29.1 7.8 69 169-263 2-76 (116)
323 PRK06914 short chain dehydroge 79.9 21 0.00046 32.2 10.5 60 163-225 3-66 (280)
324 PF04989 CmcI: Cephalosporin h 79.9 2.4 5.2E-05 37.7 3.9 59 162-224 32-96 (206)
325 PF04672 Methyltransf_19: S-ad 79.5 3.2 6.9E-05 38.4 4.8 59 164-225 70-133 (267)
326 KOG3178|consensus 79.3 5.8 0.00013 37.9 6.6 55 163-224 178-232 (342)
327 COG1063 Tdh Threonine dehydrog 79.3 3.8 8.3E-05 39.2 5.5 42 161-202 167-211 (350)
328 PRK12826 3-ketoacyl-(acyl-carr 79.1 30 0.00064 30.4 11.0 58 162-224 5-66 (251)
329 PRK08213 gluconate 5-dehydroge 79.1 23 0.00049 31.6 10.3 58 162-224 11-72 (259)
330 PRK06197 short chain dehydroge 79.0 23 0.00049 32.8 10.5 61 162-225 15-79 (306)
331 PRK07478 short chain dehydroge 78.7 22 0.00047 31.7 10.0 59 162-225 5-67 (254)
332 PRK07523 gluconate 5-dehydroge 78.4 29 0.00064 30.8 10.8 58 162-224 9-70 (255)
333 PRK07062 short chain dehydroge 78.3 24 0.00052 31.6 10.3 61 162-225 7-71 (265)
334 PRK09242 tropinone reductase; 77.9 25 0.00054 31.3 10.2 60 162-224 8-71 (257)
335 cd08283 FDH_like_1 Glutathione 77.9 4.8 0.0001 38.8 5.8 44 160-203 182-228 (386)
336 PRK07533 enoyl-(acyl carrier p 77.7 29 0.00062 31.2 10.6 58 162-224 9-71 (258)
337 PRK08251 short chain dehydroge 77.4 28 0.00061 30.7 10.3 60 163-225 2-65 (248)
338 PRK07576 short chain dehydroge 77.2 34 0.00074 30.8 11.0 58 162-224 8-69 (264)
339 PRK08217 fabG 3-ketoacyl-(acyl 76.8 41 0.0009 29.5 11.3 58 162-224 4-65 (253)
340 PRK08703 short chain dehydroge 76.4 33 0.00072 30.1 10.5 58 162-223 5-66 (239)
341 PRK07666 fabG 3-ketoacyl-(acyl 76.1 39 0.00085 29.6 10.9 57 163-224 7-67 (239)
342 PRK09291 short chain dehydroge 76.1 25 0.00055 31.1 9.7 57 164-225 3-63 (257)
343 PRK05876 short chain dehydroge 76.0 35 0.00076 31.1 10.8 58 162-224 5-66 (275)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 75.9 3.4 7.3E-05 35.9 3.7 29 172-200 7-39 (185)
345 PRK07814 short chain dehydroge 75.8 44 0.00094 30.0 11.3 59 162-225 9-71 (263)
346 PRK08340 glucose-1-dehydrogena 75.3 36 0.00077 30.4 10.5 54 165-224 2-59 (259)
347 TIGR03451 mycoS_dep_FDH mycoth 75.1 24 0.00052 33.5 9.7 42 159-202 173-219 (358)
348 PRK07677 short chain dehydroge 74.9 39 0.00085 29.9 10.6 57 163-224 1-61 (252)
349 PRK05650 short chain dehydroge 74.2 40 0.00086 30.3 10.6 56 165-225 2-61 (270)
350 PF11899 DUF3419: Protein of u 74.1 6.8 0.00015 38.2 5.7 45 159-204 32-77 (380)
351 COG2933 Predicted SAM-dependen 74.1 9.7 0.00021 35.2 6.2 72 160-259 209-280 (358)
352 PRK06139 short chain dehydroge 74.0 37 0.0008 32.1 10.6 58 162-224 6-67 (330)
353 PRK07097 gluconate 5-dehydroge 73.5 46 0.001 29.8 10.8 59 162-225 9-71 (265)
354 PLN02253 xanthoxin dehydrogena 73.4 27 0.00059 31.5 9.3 58 162-225 17-78 (280)
355 KOG0821|consensus 73.3 10 0.00022 34.2 6.0 90 162-260 50-140 (326)
356 PRK07326 short chain dehydroge 73.0 14 0.00029 32.4 7.0 57 162-224 5-65 (237)
357 COG0604 Qor NADPH:quinone redu 72.6 31 0.00068 32.7 9.7 42 160-201 140-184 (326)
358 KOG0022|consensus 72.4 7.9 0.00017 36.7 5.3 45 158-202 188-235 (375)
359 PRK06125 short chain dehydroge 72.4 41 0.00089 30.0 10.1 59 162-224 6-68 (259)
360 PRK07774 short chain dehydroge 72.4 53 0.0011 28.9 10.8 59 162-225 5-67 (250)
361 PRK07791 short chain dehydroge 72.3 41 0.00089 30.8 10.3 58 162-224 5-75 (286)
362 PRK07904 short chain dehydroge 72.0 11 0.00024 33.9 6.3 62 160-225 5-72 (253)
363 PRK08643 acetoin reductase; Va 71.8 52 0.0011 29.1 10.7 58 163-225 2-63 (256)
364 PRK09186 flagellin modificatio 71.7 60 0.0013 28.6 11.0 60 162-224 3-66 (256)
365 PLN03209 translocon at the inn 71.5 23 0.00049 36.5 8.9 62 161-225 78-150 (576)
366 PF10354 DUF2431: Domain of un 71.2 21 0.00045 30.5 7.4 104 172-294 6-130 (166)
367 KOG2782|consensus 71.0 2.8 6E-05 37.6 2.0 96 161-270 42-139 (303)
368 PRK08303 short chain dehydroge 70.9 35 0.00076 31.8 9.6 59 162-225 7-79 (305)
369 PRK06720 hypothetical protein; 70.9 65 0.0014 27.3 10.9 58 162-224 15-76 (169)
370 KOG1562|consensus 70.7 23 0.00051 33.3 8.0 79 160-256 119-202 (337)
371 PRK08339 short chain dehydroge 70.7 20 0.00043 32.4 7.7 60 162-225 7-70 (263)
372 PRK05786 fabG 3-ketoacyl-(acyl 70.7 19 0.00041 31.5 7.4 57 162-224 4-64 (238)
373 PRK10309 galactitol-1-phosphat 70.6 44 0.00095 31.3 10.3 40 160-201 158-202 (347)
374 PRK08589 short chain dehydroge 70.6 53 0.0012 29.6 10.6 58 162-225 5-66 (272)
375 PRK05866 short chain dehydroge 70.0 60 0.0013 29.9 10.9 58 162-224 39-100 (293)
376 TIGR02822 adh_fam_2 zinc-bindi 69.9 9.9 0.00021 35.8 5.7 44 159-202 162-207 (329)
377 PTZ00357 methyltransferase; Pr 69.8 12 0.00025 39.3 6.3 60 165-226 703-776 (1072)
378 PRK06138 short chain dehydroge 69.8 42 0.00091 29.5 9.5 58 162-225 4-65 (252)
379 PRK12384 sorbitol-6-phosphate 69.7 51 0.0011 29.2 10.1 59 163-224 2-64 (259)
380 PRK05875 short chain dehydroge 69.5 55 0.0012 29.4 10.4 60 162-224 6-69 (276)
381 PRK06505 enoyl-(acyl carrier p 69.4 45 0.00099 30.3 9.9 59 162-225 6-69 (271)
382 PRK07109 short chain dehydroge 69.3 69 0.0015 30.2 11.3 59 162-225 7-69 (334)
383 PRK07035 short chain dehydroge 68.8 56 0.0012 28.8 10.2 59 162-225 7-69 (252)
384 PRK06113 7-alpha-hydroxysteroi 68.8 81 0.0018 27.9 11.2 59 162-225 10-72 (255)
385 PRK08277 D-mannonate oxidoredu 68.5 55 0.0012 29.5 10.2 58 162-224 9-70 (278)
386 TIGR03201 dearomat_had 6-hydro 68.4 11 0.00024 35.6 5.7 43 160-202 164-208 (349)
387 PRK07454 short chain dehydroge 68.3 26 0.00056 30.8 7.8 59 162-225 5-67 (241)
388 cd08237 ribitol-5-phosphate_DH 68.1 9.3 0.0002 36.1 5.1 41 160-202 161-207 (341)
389 PRK12429 3-hydroxybutyrate deh 67.9 21 0.00046 31.5 7.2 57 163-224 4-64 (258)
390 cd08254 hydroxyacyl_CoA_DH 6-h 67.9 12 0.00025 34.7 5.7 43 160-202 163-207 (338)
391 PRK07024 short chain dehydroge 67.8 48 0.001 29.5 9.6 55 164-224 3-61 (257)
392 KOG2798|consensus 67.5 12 0.00025 35.5 5.4 38 163-200 151-188 (369)
393 PRK07231 fabG 3-ketoacyl-(acyl 67.5 35 0.00076 30.0 8.5 58 162-225 4-65 (251)
394 PRK08085 gluconate 5-dehydroge 67.2 61 0.0013 28.7 10.1 58 162-224 8-69 (254)
395 PRK08690 enoyl-(acyl carrier p 67.2 48 0.001 29.8 9.5 58 162-224 5-67 (261)
396 PRK12939 short chain dehydroge 67.1 23 0.00051 31.1 7.3 58 162-224 6-67 (250)
397 PLN02989 cinnamyl-alcohol dehy 66.9 24 0.00052 32.8 7.6 61 162-225 4-68 (325)
398 PRK12481 2-deoxy-D-gluconate 3 66.9 52 0.0011 29.3 9.6 57 162-225 7-67 (251)
399 PRK09880 L-idonate 5-dehydroge 66.8 12 0.00026 35.3 5.6 40 161-202 168-212 (343)
400 PF01234 NNMT_PNMT_TEMT: NNMT/ 66.5 5.5 0.00012 36.6 3.0 44 162-205 56-100 (256)
401 TIGR00571 dam DNA adenine meth 66.2 8.8 0.00019 35.3 4.4 42 155-198 17-59 (266)
402 PRK07453 protochlorophyllide o 65.1 69 0.0015 29.7 10.4 59 162-225 5-67 (322)
403 PRK05872 short chain dehydroge 64.9 51 0.0011 30.3 9.3 57 162-224 8-68 (296)
404 PRK08226 short chain dehydroge 64.9 79 0.0017 28.1 10.4 57 162-224 5-65 (263)
405 PLN03154 putative allyl alcoho 64.8 14 0.00029 35.2 5.5 42 160-201 156-200 (348)
406 COG5379 BtaA S-adenosylmethion 64.3 20 0.00044 33.7 6.2 46 160-205 61-106 (414)
407 PLN02780 ketoreductase/ oxidor 64.3 26 0.00056 33.0 7.3 59 162-223 52-114 (320)
408 COG0677 WecC UDP-N-acetyl-D-ma 63.4 6.5 0.00014 38.4 3.0 50 172-231 16-69 (436)
409 PLN02740 Alcohol dehydrogenase 63.1 14 0.00031 35.5 5.4 42 159-202 195-241 (381)
410 PRK07792 fabG 3-ketoacyl-(acyl 63.1 71 0.0015 29.6 10.0 58 162-224 11-73 (306)
411 TIGR03206 benzo_BadH 2-hydroxy 63.0 33 0.00072 30.1 7.5 57 163-224 3-63 (250)
412 PRK13394 3-hydroxybutyrate deh 62.6 29 0.00063 30.8 7.0 59 162-225 6-68 (262)
413 PRK06181 short chain dehydroge 62.4 30 0.00065 30.9 7.1 57 164-225 2-62 (263)
414 PRK08265 short chain dehydroge 62.3 83 0.0018 28.1 10.1 56 162-225 5-64 (261)
415 PRK12823 benD 1,6-dihydroxycyc 62.1 70 0.0015 28.3 9.5 58 162-225 7-68 (260)
416 TIGR02818 adh_III_F_hyde S-(hy 62.1 17 0.00037 34.7 5.7 44 159-202 182-228 (368)
417 PRK06196 oxidoreductase; Provi 62.0 63 0.0014 29.9 9.5 55 162-225 25-83 (315)
418 PRK09496 trkA potassium transp 61.9 33 0.00071 33.6 7.8 52 163-224 231-286 (453)
419 PF01210 NAD_Gly3P_dh_N: NAD-d 61.7 49 0.0011 27.6 7.8 85 166-273 2-95 (157)
420 PRK05599 hypothetical protein; 61.6 87 0.0019 27.8 10.0 57 165-225 2-61 (246)
421 COG0240 GpsA Glycerol-3-phosph 61.5 83 0.0018 30.0 10.0 115 166-312 4-130 (329)
422 cd05188 MDR Medium chain reduc 61.2 20 0.00043 31.7 5.7 43 160-202 132-176 (271)
423 PRK14106 murD UDP-N-acetylmura 61.0 40 0.00087 33.1 8.3 55 162-224 4-63 (450)
424 PRK07831 short chain dehydroge 60.8 1.2E+02 0.0026 26.9 11.5 60 162-224 16-80 (262)
425 cd00466 DHQase_II Dehydroquina 60.7 45 0.00097 27.8 7.0 73 183-272 16-91 (140)
426 KOG0725|consensus 60.7 1.3E+02 0.0029 27.6 11.1 62 162-225 7-72 (270)
427 PF07015 VirC1: VirC1 protein; 60.3 38 0.00082 30.7 7.1 70 179-262 25-96 (231)
428 KOG2352|consensus 60.2 14 0.0003 37.0 4.7 66 158-228 43-111 (482)
429 PRK08993 2-deoxy-D-gluconate 3 60.1 98 0.0021 27.4 10.1 56 162-224 9-68 (253)
430 TIGR02825 B4_12hDH leukotriene 59.6 20 0.00043 33.3 5.6 43 159-201 135-180 (325)
431 PRK06114 short chain dehydroge 58.9 1.2E+02 0.0027 26.7 10.5 58 162-224 7-69 (254)
432 PLN02668 indole-3-acetate carb 58.9 7 0.00015 38.1 2.4 20 163-182 64-83 (386)
433 PLN02662 cinnamyl-alcohol dehy 58.9 41 0.0009 31.0 7.6 60 162-224 3-66 (322)
434 PRK13849 putative crown gall t 58.7 41 0.00088 30.2 7.2 25 176-200 22-48 (231)
435 cd08281 liver_ADH_like1 Zinc-d 58.6 20 0.00043 34.2 5.5 43 160-202 189-234 (371)
436 PF02636 Methyltransf_28: Puta 58.3 11 0.00025 34.1 3.6 43 164-206 20-72 (252)
437 PRK06200 2,3-dihydroxy-2,3-dih 58.2 92 0.002 27.7 9.6 56 162-225 5-64 (263)
438 PRK05717 oxidoreductase; Valid 58.2 75 0.0016 28.2 9.0 56 162-225 9-68 (255)
439 PRK12743 oxidoreductase; Provi 57.9 1.4E+02 0.0029 26.5 11.0 58 163-225 2-64 (256)
440 PRK08415 enoyl-(acyl carrier p 57.8 1E+02 0.0023 28.0 10.0 59 162-225 4-67 (274)
441 PF02737 3HCDH_N: 3-hydroxyacy 57.8 23 0.0005 30.5 5.2 41 166-206 2-44 (180)
442 PRK06603 enoyl-(acyl carrier p 57.6 1E+02 0.0022 27.6 9.8 58 162-224 7-69 (260)
443 PRK05855 short chain dehydroge 57.5 1.1E+02 0.0023 30.7 10.9 59 162-225 314-376 (582)
444 PRK08416 7-alpha-hydroxysteroi 57.3 1.2E+02 0.0026 27.0 10.2 59 162-225 7-71 (260)
445 PRK06079 enoyl-(acyl carrier p 57.1 96 0.0021 27.6 9.5 56 162-224 6-66 (252)
446 PRK06935 2-deoxy-D-gluconate 3 57.1 1.3E+02 0.0028 26.6 10.4 57 162-224 14-74 (258)
447 PRK08594 enoyl-(acyl carrier p 56.9 1.1E+02 0.0023 27.5 9.8 58 162-225 6-71 (257)
448 PRK09072 short chain dehydroge 56.7 41 0.00088 30.1 7.0 58 162-225 4-65 (263)
449 PRK07819 3-hydroxybutyryl-CoA 56.6 28 0.00061 32.3 6.0 42 165-206 7-50 (286)
450 cd08230 glucose_DH Glucose deh 56.6 24 0.00052 33.4 5.6 42 160-201 170-216 (355)
451 COG1255 Uncharacterized protei 56.6 46 0.00099 26.9 6.2 52 159-225 11-63 (129)
452 PLN02896 cinnamyl-alcohol dehy 56.1 62 0.0013 30.5 8.4 59 161-225 8-70 (353)
453 PRK08628 short chain dehydroge 56.1 1.2E+02 0.0027 26.7 10.0 58 162-225 6-67 (258)
454 PRK08159 enoyl-(acyl carrier p 55.7 1.1E+02 0.0023 27.8 9.7 58 162-224 9-71 (272)
455 TIGR01832 kduD 2-deoxy-D-gluco 55.6 1.4E+02 0.0031 26.1 10.6 57 162-225 4-64 (248)
456 cd08294 leukotriene_B4_DH_like 55.6 23 0.00051 32.6 5.3 43 160-202 141-186 (329)
457 PRK07984 enoyl-(acyl carrier p 55.4 97 0.0021 28.0 9.3 58 162-224 5-67 (262)
458 PRK07832 short chain dehydroge 55.4 1E+02 0.0022 27.7 9.4 51 171-224 7-61 (272)
459 PRK03369 murD UDP-N-acetylmura 55.3 47 0.001 33.4 7.7 40 159-198 8-49 (488)
460 PRK07067 sorbitol dehydrogenas 55.2 1.5E+02 0.0032 26.2 10.7 54 163-224 6-63 (257)
461 COG4301 Uncharacterized conser 54.7 1.8E+02 0.0039 27.0 11.6 97 160-275 76-187 (321)
462 PRK05565 fabG 3-ketoacyl-(acyl 54.6 97 0.0021 26.9 9.0 58 163-225 5-67 (247)
463 PRK08278 short chain dehydroge 54.6 1.1E+02 0.0023 27.7 9.4 59 162-225 5-74 (273)
464 cd08295 double_bond_reductase_ 54.5 25 0.00053 32.9 5.3 44 159-202 148-194 (338)
465 PRK08324 short chain dehydroge 54.5 1.2E+02 0.0025 31.9 10.7 57 162-224 421-481 (681)
466 TIGR03366 HpnZ_proposed putati 54.5 24 0.00052 32.2 5.1 40 161-202 119-163 (280)
467 PHA02518 ParA-like protein; Pr 54.5 27 0.00058 30.1 5.2 18 178-195 23-40 (211)
468 PRK05993 short chain dehydroge 54.3 91 0.002 28.2 8.9 51 163-224 4-58 (277)
469 TIGR01963 PHB_DH 3-hydroxybuty 53.8 53 0.0012 28.8 7.2 55 165-224 3-61 (255)
470 PRK06701 short chain dehydroge 53.7 1.2E+02 0.0027 27.7 9.8 58 162-224 45-107 (290)
471 PRK07889 enoyl-(acyl carrier p 53.5 1.1E+02 0.0023 27.4 9.2 57 162-225 6-69 (256)
472 PRK12935 acetoacetyl-CoA reduc 53.4 1.5E+02 0.0034 25.8 10.2 59 162-225 5-68 (247)
473 KOG1205|consensus 53.1 1.3E+02 0.0028 28.1 9.7 62 162-225 11-75 (282)
474 PRK11730 fadB multifunctional 52.8 31 0.00067 36.6 6.1 43 164-206 314-358 (715)
475 PRK07041 short chain dehydroge 52.6 88 0.0019 27.0 8.3 50 171-225 4-57 (230)
476 TIGR02415 23BDH acetoin reduct 52.5 1.6E+02 0.0035 25.8 10.6 55 165-224 2-60 (254)
477 PRK08762 molybdopterin biosynt 52.1 1.8E+02 0.0039 28.1 10.9 32 162-193 134-168 (376)
478 COG1748 LYS9 Saccharopine dehy 52.1 1.1E+02 0.0024 29.9 9.4 80 164-269 2-89 (389)
479 TIGR02632 RhaD_aldol-ADH rhamn 52.1 1.3E+02 0.0027 31.7 10.5 60 162-224 413-476 (676)
480 PRK12748 3-ketoacyl-(acyl-carr 52.0 1.7E+02 0.0037 25.8 10.2 59 162-225 4-79 (256)
481 PRK10904 DNA adenine methylase 52.0 17 0.00036 33.6 3.6 43 155-199 20-62 (271)
482 PRK07074 short chain dehydroge 51.4 1.5E+02 0.0032 26.1 9.7 55 164-225 3-61 (257)
483 PRK05395 3-dehydroquinate dehy 51.3 80 0.0017 26.5 7.1 70 185-271 20-92 (146)
484 PRK07201 short chain dehydroge 51.2 1.2E+02 0.0026 31.3 10.2 58 163-225 371-432 (657)
485 TIGR03325 BphB_TodD cis-2,3-di 51.2 1.4E+02 0.003 26.5 9.6 55 162-224 4-62 (262)
486 PRK12827 short chain dehydroge 50.8 1.6E+02 0.0036 25.5 9.8 58 163-225 6-71 (249)
487 PRK06035 3-hydroxyacyl-CoA deh 50.8 39 0.00084 31.2 5.9 41 165-205 5-47 (291)
488 PRK07806 short chain dehydroge 50.6 1.7E+02 0.0037 25.5 10.9 59 162-225 5-68 (248)
489 cd08300 alcohol_DH_class_III c 50.3 36 0.00077 32.4 5.7 41 159-201 183-228 (368)
490 KOG1208|consensus 50.0 2.1E+02 0.0046 27.0 10.8 61 162-225 34-98 (314)
491 PF00106 adh_short: short chai 49.9 1.4E+02 0.003 24.2 9.7 52 169-224 5-63 (167)
492 PRK06997 enoyl-(acyl carrier p 49.8 1.4E+02 0.003 26.8 9.3 32 162-193 5-41 (260)
493 cd08245 CAD Cinnamyl alcohol d 49.6 39 0.00084 31.2 5.8 42 160-201 160-203 (330)
494 PRK10538 malonic semialdehyde 49.6 1.3E+02 0.0028 26.5 9.0 49 170-225 6-58 (248)
495 COG1565 Uncharacterized conser 49.5 44 0.00095 32.3 6.0 44 163-206 78-131 (370)
496 PRK06940 short chain dehydroge 49.5 65 0.0014 29.2 7.2 56 164-225 3-61 (275)
497 PF07669 Eco57I: Eco57I restri 49.5 9 0.00019 30.0 1.2 14 249-262 2-15 (106)
498 PRK13015 3-dehydroquinate dehy 49.5 83 0.0018 26.4 6.9 72 183-271 18-92 (146)
499 PRK03659 glutathione-regulated 49.2 21 0.00047 36.8 4.3 44 171-224 406-453 (601)
500 PRK06484 short chain dehydroge 49.1 1.2E+02 0.0025 30.3 9.5 55 162-224 4-62 (520)
No 1
>KOG2078|consensus
Probab=100.00 E-value=2.3e-47 Score=357.17 Aligned_cols=316 Identities=40% Similarity=0.626 Sum_probs=259.4
Q ss_pred ccccccccccCCCChhHHHHHHhcccccCCceeEEEEeeccCCChHHHHHhccCCC-CCCceeEEECCEEEEEeCchhhh
Q psy16898 3 LHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILPDN-VAMSSFTSVGHIVHCNLREELIE 81 (324)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~p~~-~~~~~~d~~G~i~vi~~~~~~~~ 81 (324)
||+++.-.+.+ +|++.+-.+...+....+++.+++.|+|++|+.++++|+++|++ +.+++|.+.|||+|+|+..+..+
T Consensus 90 ls~~rv~~dds-f~~~~ll~~e~lN~~~~~~i~~~~~L~yE~w~~keilRavlpe~e~~~s~ft~~GhIaHLNl~~e~lp 168 (495)
T KOG2078|consen 90 LSPSRVPADDS-FPEEELLVLELLNWPELEIIPHELELTYEYWKAKEILRAVLPEEEDVPSSFTITGHIAHLNLRDEQLP 168 (495)
T ss_pred eeccccccccc-chHHHHHHhhhcCcccceeeccccccchhhhhHHHHHHhhCcccccccccceeeeeeEEeeccchhcc
Confidence 68844444444 99988777777666566799999999999999999999999999 89999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhcc
Q psy16898 82 HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVR 161 (324)
Q Consensus 82 ~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~ 161 (324)
++..|++++.++++.+++++.|.+.+.+.+|.+++++|+|+++..+.++|+|++|++|++++|||+|++.|+.++...++
T Consensus 169 fk~iI~~Vi~DK~n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWnsRL~~Eherlsg~fk 248 (495)
T KOG2078|consen 169 FKRIIGQVIYDKNNLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNSRLSHEHERLSGLFK 248 (495)
T ss_pred HHHHHHHHhhccCCCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeeccchhHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCC-eEEEeccHHHHHHHH-------HHHh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTP-ISATQKDARDFLQTD-------ARAH 233 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~-v~~~~~D~~~~~~~~-------~~~~ 233 (324)
+|+.|.|+|||+|+|++++++++|+|+|+|+||+++++++.|++.|. +... ++++++|+.+|+++. ..+.
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNk--v~~~~iei~Nmda~~Flr~e~~~~~~~I~~~ 326 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNK--VDPSAIEIFNMDAKDFLRQEPLPYKRLIADE 326 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccc--cchhheeeecccHHHHhhcCCchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999 8754 999999999998521 1111
Q ss_pred hhhh----cccCCC---------CCCCCcccEEEECChhhhHHHHHHHhc-cch-hhcCCCCCCCEEEEEEccc---CCC
Q psy16898 234 LVRW----SQSEGN---------STGGTAVARVIMNLPATAVEYVRYLKV-LTR-EEFGKLSRPPVLYLYCFLP---KMD 295 (324)
Q Consensus 234 ~~~~----~~~~~~---------~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~-~~~~~~~~~g~vh~y~f~~---~~~ 295 (324)
..++ .....+ .+...+.+|++||+|+.+++|+.+|++ +.. +.+ .....+++|||||++ ...
T Consensus 327 v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~-d~~~lplvhcy~F~k~~~~~~ 405 (495)
T KOG2078|consen 327 VLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPI-DKTPLPLVHCYCFSKLFCDVS 405 (495)
T ss_pred HhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCcc-ccccceeEEEEEEeecccCCC
Confidence 1110 000100 122345789999999999999999998 654 321 112457899999999 222
Q ss_pred hhHH----hHhhh----cCCCceEEEEeecccCCC
Q psy16898 296 LETK----KKIKS----YDPSYATLIRGIRRLSSD 322 (324)
Q Consensus 296 ~~~~----~~v~~----y~~~~~~~i~~~~~~~~d 322 (324)
..+. ..+.+ ...+.-...+-||.++|.
T Consensus 406 s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~Vapn 440 (495)
T KOG2078|consen 406 STEDLVTARIVAALKVFAEDGALVSLHLVRKVAPN 440 (495)
T ss_pred chHHHHHHHHHhhcceeeccccceeeeeeeccCCC
Confidence 2222 11211 233334577888888874
No 2
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=3.9e-43 Score=328.88 Aligned_cols=243 Identities=37% Similarity=0.614 Sum_probs=216.0
Q ss_pred hHHHHHhccCCC--C--CCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccC
Q psy16898 47 AEDILKAILPDN--V--AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGK 122 (324)
Q Consensus 47 ~~~~l~~~~p~~--~--~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~ 122 (324)
.+++++..++++ . +|++|+++|||++++++++..+++..|++++++.++.+++|+.+...+.|++|.+.+++|+|+
T Consensus 69 l~~~~~~~~~~~~~~~~~p~~~~iiGdIai~~~~~e~~~~~~~i~~ai~~~~~~vk~V~~k~~~v~G~~R~~~le~laGe 148 (341)
T COG2520 69 LKEILSDRLPEEVLRELVPSSFDIIGDIAILSIPDELEPYKREIAEAILRVHGKVKAVLLKEGPVAGEFRVPRLEVLAGE 148 (341)
T ss_pred HHHHhhccchhhhhhhcCCcceEEEccEEEEeCCcccchHHHHHHHHHHhhccCeeEEEEecCccCCeEeccceEEeecC
Confidence 456666666665 3 799999999999999988877789999999999999999999999888999999999999999
Q ss_pred CCeEEEEEeCCeEEEEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHH
Q psy16898 123 DCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQ 201 (324)
Q Consensus 123 ~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~ 201 (324)
..+.|+++|||+.|++|++++|||+++++||.|+++...+|++|+|+|||+|+||+++|+.|+ +|+|+|+||.|+++++
T Consensus 149 ~~teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 149 RRTETIHRENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK 228 (341)
T ss_pred CCceEEEecCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999998 5999999999999999
Q ss_pred HHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCC
Q psy16898 202 ASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLS 280 (324)
Q Consensus 202 ~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~ 280 (324)
+|+++|+ +.+.+..++||++++..+. ..+|+|+||+|.++.+|++.+.. +++
T Consensus 229 eNi~LN~--v~~~v~~i~gD~rev~~~~------------------~~aDrIim~~p~~a~~fl~~A~~~~k~------- 281 (341)
T COG2520 229 ENIRLNK--VEGRVEPILGDAREVAPEL------------------GVADRIIMGLPKSAHEFLPLALELLKD------- 281 (341)
T ss_pred HHHHhcC--ccceeeEEeccHHHhhhcc------------------ccCCEEEeCCCCcchhhHHHHHHHhhc-------
Confidence 9999999 9877999999999998764 23999999999999999999987 555
Q ss_pred CCCEEEEEEcccCCChhH---------------------HhHhhhcCCCceEEEEeec
Q psy16898 281 RPPVLYLYCFLPKMDLET---------------------KKKIKSYDPSYATLIRGIR 317 (324)
Q Consensus 281 ~~g~vh~y~f~~~~~~~~---------------------~~~v~~y~~~~~~~i~~~~ 317 (324)
+|++|+|.|++.++... ...|++|+|+..+.+++++
T Consensus 282 -~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~ 338 (341)
T COG2520 282 -GGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLR 338 (341)
T ss_pred -CcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEE
Confidence 49999999999866311 1114677788887777765
No 3
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=100.00 E-value=8.1e-42 Score=300.36 Aligned_cols=192 Identities=44% Similarity=0.709 Sum_probs=156.8
Q ss_pred ceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEecc
Q psy16898 62 SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFS 141 (324)
Q Consensus 62 ~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~ 141 (324)
+|||++|||++++++++..++++.|+++|+++.|++++|+.+.+.+.+.+|.+++++|+|+++++|+++|+|++|.+|++
T Consensus 1 t~~~~iG~Iaiv~~~~~~~~~~~~I~~~i~~~~~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~ 80 (200)
T PF02475_consen 1 TSFEIIGDIAIVNLPEELEPYKELIAEAILEKNPNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLS 80 (200)
T ss_dssp -EEEEETTEEEEEB-CCCCHHHHHHHHHHHHHC-T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEETT
T ss_pred CceEEEccEEEEeCCcccchHHHHHHHHHHHhccCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccc
Confidence 58999999999999988889999999999999999999999998889999999999999998889999999999999999
Q ss_pred ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe
Q psy16898 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219 (324)
Q Consensus 142 ~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~ 219 (324)
++||++++++||.|+.+.+++|++|+|+|||+|+|++++|+ +++.|+|+|+||.|++++++|+++|+ +.+++.+++
T Consensus 81 kvyfs~rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNk--v~~~i~~~~ 158 (200)
T PF02475_consen 81 KVYFSPRLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNK--VENRIEVIN 158 (200)
T ss_dssp TS---GGGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT---TTTEEEEE
T ss_pred eEEEccccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcC--CCCeEEEEc
Confidence 99999999999999999999999999999999999999999 67799999999999999999999999 998899999
Q ss_pred ccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898 220 KDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 220 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~ 274 (324)
+|+++++.. ..||+|+||+|..+.+||+++.. ++++
T Consensus 159 ~D~~~~~~~-------------------~~~drvim~lp~~~~~fl~~~~~~~~~~ 195 (200)
T PF02475_consen 159 GDAREFLPE-------------------GKFDRVIMNLPESSLEFLDAALSLLKEG 195 (200)
T ss_dssp S-GGG---T-------------------T-EEEEEE--TSSGGGGHHHHHHHEEEE
T ss_pred CCHHHhcCc-------------------cccCEEEECChHHHHHHHHHHHHHhcCC
Confidence 999998872 34999999999999999999988 5543
No 4
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=100.00 E-value=5.5e-31 Score=254.54 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=195.3
Q ss_pred HHhccCCC-CCC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccc--eeeEEccCC-C
Q psy16898 51 LKAILPDN-VAM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNF--QMELLAGKD-C 124 (324)
Q Consensus 51 l~~~~p~~-~~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~--~~~~l~G~~-~ 124 (324)
.|-+-.+. .+| --+|+||+++++|+.+ .+..+++.|.++|.+.++ .++|+.+.+......++. ...+++|+. +
T Consensus 102 yRlv~~e~DglpGliVD~y~d~~vvq~~~~~~~~~~~~i~~aL~~~~~-~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~ 180 (396)
T PRK15128 102 YRLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYP-ECAIYDRSDVAVRKKEGMELTQGPVTGELPP 180 (396)
T ss_pred EEEEeccCCCCCcEEEEEECCEEEEEECcHHHHHhHHHHHHHHHHHcC-CcEEEEcCcchhHHhcCCCccceEEecCCCC
Confidence 34444333 466 4789999999999865 577789999999998876 678998765433333332 356788984 4
Q ss_pred eEEEEEeCCeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHH
Q psy16898 125 MVTMHKENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYA 198 (324)
Q Consensus 125 ~~~~~~e~g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~ 198 (324)
..+.+.|||++|.+|+.. +|+++| +.+..+..+.+|++|||+|||+|.|++.++..|+ +|+++|+|+.+++
T Consensus 181 ~~~~v~E~g~~f~vdl~~g~ktG~flDqr---~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~ 257 (396)
T PRK15128 181 ALLPIEEHGMKLLVDIQGGHKTGYYLDQR---DSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD 257 (396)
T ss_pred ccEEEEECCEEEEEecccccccCcChhhH---HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 456788999999999875 899998 7777777778899999999999999999888777 9999999999999
Q ss_pred HHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH---HHHHHhccch-
Q psy16898 199 WLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE---YVRYLKVLTR- 273 (324)
Q Consensus 199 ~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~---~l~~~~~l~~- 273 (324)
.|++|++.|+ +. ++++++++|+++++...... +..||.||+|||+.+.. ...+.++|..
T Consensus 258 ~a~~N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~--------------~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l 321 (396)
T PRK15128 258 IARQNVELNK--LDLSKAEFVRDDVFKLLRTYRDR--------------GEKFDVIVMDPPKFVENKSQLMGACRGYKDI 321 (396)
T ss_pred HHHHHHHHcC--CCCCcEEEEEccHHHHHHHHHhc--------------CCCCCEEEECCCCCCCChHHHHHHHHHHHHH
Confidence 9999999999 85 47999999999988664321 24599999999986431 2222222222
Q ss_pred --hhcCCCCCCCEEEEEEcccC-CChhHHhHhh--hcCCCceEEEEeecccCCCCC
Q psy16898 274 --EEFGKLSRPPVLYLYCFLPK-MDLETKKKIK--SYDPSYATLIRGIRRLSSDGP 324 (324)
Q Consensus 274 --~~~~~~~~~g~vh~y~f~~~-~~~~~~~~v~--~y~~~~~~~i~~~~~~~~d~~ 324 (324)
...+.++++|++.+++|+.. +.+.+.+.+. ....++..++++.+.|+||||
T Consensus 322 ~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP 377 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHP 377 (396)
T ss_pred HHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCC
Confidence 22345678898887666654 5566777774 577899999999999999999
No 5
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=248.41 Aligned_cols=255 Identities=19% Similarity=0.193 Sum_probs=200.1
Q ss_pred HHhccCCC-CCC-ceeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCC-ccccc-ceeeEEccC-CC
Q psy16898 51 LKAILPDN-VAM-SSFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTID-NTYRN-FQMELLAGK-DC 124 (324)
Q Consensus 51 l~~~~p~~-~~~-~~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~-~~~~~-~~~~~l~G~-~~ 124 (324)
.|.+.-+. .+| --.|+||+++|+|+.+ .++..++.|.+++.+..+.+++|+.+.+... +..+. .....+.|+ .+
T Consensus 98 ~Rl~~~e~dgl~Gl~vD~ygd~~vvq~~s~~~~~~~~~i~~~l~~~~~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~ 177 (393)
T COG1092 98 YRLVNAEGDGLPGLTVDRYGDYLVVQLYSAGIEIFKEAILEALAEAFPAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAP 177 (393)
T ss_pred EEEEeccCCCCCCeEEEecCCEEEEEecccccccchHHHHHHHHHhhcccceeEeccchhhhhhhcccccccccccccCC
Confidence 44444444 455 5689999999999855 6777889999999999988999998864321 11111 133456673 45
Q ss_pred eEEEEEeCCeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHH
Q psy16898 125 MVTMHKENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYA 198 (324)
Q Consensus 125 ~~~~~~e~g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~ 198 (324)
..+.+.|+|++|.+++.. ||.++| +.++.+.....|++|||+||+||+||++||..|| +|++||+|..+++
T Consensus 178 ~~~~i~E~g~kf~v~~~~g~kTGfFlDqR---~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~ 254 (393)
T COG1092 178 EEVVIEENGVKFLVDLVDGLKTGFFLDQR---DNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALE 254 (393)
T ss_pred CcEEEEeCCeEEEEecCCcccceeeHHhH---HHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHH
Confidence 567788999999999874 899999 7777776655699999999999999999999999 9999999999999
Q ss_pred HHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH---HHHHHHhccchh
Q psy16898 199 WLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV---EYVRYLKVLTRE 274 (324)
Q Consensus 199 ~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~l~~~ 274 (324)
+|++|+++|+ ++ .++.++++|+++++...... +.+||+||+|||.++. ...++.+.|.+.
T Consensus 255 ~a~~N~~LNg--~~~~~~~~i~~Dvf~~l~~~~~~--------------g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l 318 (393)
T COG1092 255 WARENAELNG--LDGDRHRFIVGDVFKWLRKAERR--------------GEKFDLIILDPPSFARSKKQEFSAQRDYKDL 318 (393)
T ss_pred HHHHHHHhcC--CCccceeeehhhHHHHHHHHHhc--------------CCcccEEEECCcccccCcccchhHHHHHHHH
Confidence 9999999999 85 47899999999999987653 4679999999999754 234445555544
Q ss_pred h---cCCCCCCCEEEEE-EcccCCChhHHhHhh--hcCCCceEEEEeecccCCCCC
Q psy16898 275 E---FGKLSRPPVLYLY-CFLPKMDLETKKKIK--SYDPSYATLIRGIRRLSSDGP 324 (324)
Q Consensus 275 ~---~~~~~~~g~vh~y-~f~~~~~~~~~~~v~--~y~~~~~~~i~~~~~~~~d~~ 324 (324)
. +..++++|++..+ |....+.+.+.+.+. ....+...++.+...|+||||
T Consensus 319 ~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~p 374 (393)
T COG1092 319 NDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDHP 374 (393)
T ss_pred HHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCcc
Confidence 3 4567788887755 555557777788773 467778899999999999997
No 6
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.96 E-value=9.2e-29 Score=228.28 Aligned_cols=238 Identities=20% Similarity=0.249 Sum_probs=161.2
Q ss_pred eeEEECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCC--CC---CcccccceeeEEccCCCeEEEEEeCCeEE
Q psy16898 63 SFTSVGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAH--TI---DNTYRNFQMELLAGKDCMVTMHKENGCTF 136 (324)
Q Consensus 63 ~~d~~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~--~~---~~~~~~~~~~~l~G~~~~~~~~~e~g~~f 136 (324)
-+|+||+.+++++.. .+..++..|.+.|....+ +.++.... .. .+.......++++|+.+..+++.|+|++|
T Consensus 18 ~VD~y~~~lvvq~~~~~~~~~~~~l~~~L~~l~~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~f 95 (286)
T PF10672_consen 18 TVDRYGDVLVVQLYSEGMERFLDELREALEALIP--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLKF 95 (286)
T ss_dssp EEEEETTEEEEEE-SHHHHCTHHHHHHHHHHHHC--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEEE
T ss_pred EEEEECCEEEEEECCcChHHHHHHHHHHHHHHhh--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEEE
Confidence 689999999999754 577788889988886543 22322211 11 11112335678899976667789999999
Q ss_pred EEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898 137 KMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQ 210 (324)
Q Consensus 137 ~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~ 210 (324)
.+|+.. +|+++| +.++.+....+|++|||+||+||+||+.+++.|+ +|++||.|..+++++++|+++|+
T Consensus 96 ~v~l~~gqktGlFlDqR---~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg-- 170 (286)
T PF10672_consen 96 RVDLTDGQKTGLFLDQR---ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG-- 170 (286)
T ss_dssp EEESSSSSSTSS-GGGH---HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT--
T ss_pred EEEcCCCCcceEcHHHH---hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC--
Confidence 999864 899999 8888888888899999999999999999999998 99999999999999999999999
Q ss_pred CC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH---HHHHHhccchhhcCCCCCCCEEE
Q psy16898 211 VK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE---YVRYLKVLTREEFGKLSRPPVLY 286 (324)
Q Consensus 211 l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~---~l~~~~~l~~~~~~~~~~~g~vh 286 (324)
++ ++++++.+|+++++..... ..+||+||+|||.++.. ....+..+....+..++++|.+.
T Consensus 171 ~~~~~~~~~~~Dvf~~l~~~~~---------------~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 171 LDLDRHRFIQGDVFKFLKRLKK---------------GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp -CCTCEEEEES-HHHHHHHHHH---------------TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCccceEEEecCHHHHHHHHhc---------------CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 86 5899999999999876433 24699999999997532 11111111111233455678877
Q ss_pred EEEcccC-CChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898 287 LYCFLPK-MDLETKKKIKSYDPSYATLIRGIRRLSSDGP 324 (324)
Q Consensus 287 ~y~f~~~-~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~ 324 (324)
+.++++. +.+.+.+.++... ...++++.-.++||||
T Consensus 236 ~~scs~~i~~~~l~~~~~~~a--~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 236 TCSCSHHISPDFLLEAVAEAA--REVEFIERLGQPPDFP 272 (286)
T ss_dssp EEE--TTS-HHHHHHHHHHHH--HHCEEEEEEE------
T ss_pred EEcCCcccCHHHHHHHHHHhC--ccceEeeeeccccccc
Confidence 6666665 4445566665544 4567778889999998
No 7
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.94 E-value=1.4e-25 Score=231.79 Aligned_cols=235 Identities=14% Similarity=0.132 Sum_probs=172.3
Q ss_pred ceeEEECCEEEEEeCc-h-------hhhhHHHHHHHHHhhC-CCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeC
Q psy16898 62 SSFTSVGHIVHCNLRE-E-------LIEHKFIIGRVLLDKV-PSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKEN 132 (324)
Q Consensus 62 ~~~d~~G~i~vi~~~~-~-------~~~~~~~I~~~l~~~~-~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~ 132 (324)
--+|+||+++++|+.. . +...++.|.++|.+.. ...++|+.|.... .. +.......|+.+..+.+.|+
T Consensus 430 l~vD~y~~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~i~~k~~~~--~~-g~~~~~~~g~~~~~~~v~e~ 506 (702)
T PRK11783 430 VAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPNKVVLKTRER--QK-GKNQYQKLAEKGEFLEVTEY 506 (702)
T ss_pred eEEEEECCEEEEEECCCccccCHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeehh--cc-CcchhhhccCCCceEEEEEC
Confidence 5789999999999753 3 6678888999888762 1357899883321 11 22111111554455678899
Q ss_pred CeEEEEeccc-----eeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898 133 GCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 133 g~~f~id~~~-----~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~ 206 (324)
|++|.+|+.. +|+++| +.++++..+.+|++|||+|||+|.|++.+++.|+ +|+++|+|+.|++.|++|++.
T Consensus 507 g~~f~v~~~~~~~tG~flDqr---~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ 583 (702)
T PRK11783 507 GAKLLVNLTDYLDTGLFLDHR---PTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL 583 (702)
T ss_pred CEEEEEEcCCCCcceECHHHH---HHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 9999999765 789998 6677777777899999999999999999999887 799999999999999999999
Q ss_pred hCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-----HHHHHHhccc---hhhcC
Q psy16898 207 NERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-----EYVRYLKVLT---REEFG 277 (324)
Q Consensus 207 n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-----~~l~~~~~l~---~~~~~ 277 (324)
|+ +. ++++++++|+.+++... +..||.||+|||+.+. ...+..+.+. .....
T Consensus 584 ng--~~~~~v~~i~~D~~~~l~~~-----------------~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~ 644 (702)
T PRK11783 584 NG--LSGRQHRLIQADCLAWLKEA-----------------REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKR 644 (702)
T ss_pred hC--CCccceEEEEccHHHHHHHc-----------------CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 99 86 58999999999987542 1359999999998542 1111111111 11233
Q ss_pred CCCCCCEEEEEEcccCCChhHHhHhhhcCCCceEEEEeecccCCCCC
Q psy16898 278 KLSRPPVLYLYCFLPKMDLETKKKIKSYDPSYATLIRGIRRLSSDGP 324 (324)
Q Consensus 278 ~~~~~g~vh~y~f~~~~~~~~~~~v~~y~~~~~~~i~~~~~~~~d~~ 324 (324)
.++++|++.+.++...-... .+. ....+..+++++...|++|||
T Consensus 645 lL~~gG~l~~~~~~~~~~~~-~~~--~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 645 LLRPGGTLYFSNNKRGFKMD-EEG--LAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred HcCCCCEEEEEeCCccCChh-HHH--HHhCCCeEEEEecCCCCCCCC
Confidence 56678998876665543322 111 234678999999999999998
No 8
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.9e-22 Score=192.56 Aligned_cols=211 Identities=20% Similarity=0.300 Sum_probs=162.5
Q ss_pred eccCCChHHHHHhccCCCCCCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCceEEEEcCCCC-CcccccceeeEE
Q psy16898 41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQMELL 119 (324)
Q Consensus 41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~~l 119 (324)
.|+.....+.|+.++ .+.+. +++++.+... .+......+.+++.++.+.+++++.+.. .+...+.+...+
T Consensus 181 ~y~~~~~~g~l~~~~----~~~g~----~~~i~~v~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~i~g~~~~~~ 251 (432)
T COG2265 181 PYNEKKKKGILRLIV----LREGQ----EVMVRLVTKH-LPELEQALRELLEAFPEIKGIVQNINRAKTNVIEGDEEITL 251 (432)
T ss_pred ccchhhccceEEEEE----eccCc----eEEEEEEecc-chhHHHHHHHHHHhhhhcceEEEEecCCCCceEEcceeEEE
Confidence 455555677777766 44443 3555554332 5566777888888899899988887764 445555566666
Q ss_pred ccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898 120 AGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195 (324)
Q Consensus 120 ~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~ 195 (324)
+|.. . .+| |..|.+++..|||.+..++|.+. +++.+. ++++|||+|||+|+||+++|++..+|+|+|++++
T Consensus 252 ~~~~-~---i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~ 326 (432)
T COG2265 252 YGLE-S---IRE-GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPE 326 (432)
T ss_pred eccc-c---ccc-ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHH
Confidence 6654 2 233 99999999999999998888774 344444 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccch
Q psy16898 196 SYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTR 273 (324)
Q Consensus 196 a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~ 273 (324)
|++.|++|++.|+ +. |++|..+|+.++...... +..||.||.|||+.. .++++.+..+++
T Consensus 327 aV~~A~~NA~~n~--i~-N~~f~~~~ae~~~~~~~~---------------~~~~d~VvvDPPR~G~~~~~lk~l~~~~p 388 (432)
T COG2265 327 AVEAAQENAAANG--ID-NVEFIAGDAEEFTPAWWE---------------GYKPDVVVVDPPRAGADREVLKQLAKLKP 388 (432)
T ss_pred HHHHHHHHHHHcC--CC-cEEEEeCCHHHHhhhccc---------------cCCCCEEEECCCCCCCCHHHHHHHHhcCC
Confidence 9999999999999 87 699999999999876431 245999999999964 468988888776
Q ss_pred hhcCCCCCCCEEEEEEcc
Q psy16898 274 EEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 274 ~~~~~~~~~g~vh~y~f~ 291 (324)
. .++++.|--
T Consensus 389 ~--------~IvYVSCNP 398 (432)
T COG2265 389 K--------RIVYVSCNP 398 (432)
T ss_pred C--------cEEEEeCCH
Confidence 5 577777753
No 9
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.87 E-value=8.1e-21 Score=186.55 Aligned_cols=209 Identities=17% Similarity=0.234 Sum_probs=153.6
Q ss_pred eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-CchhhhhHHHHHHHHHhhCCCceEEEEcCCCC-CcccccceeeE
Q psy16898 41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-REELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQMEL 118 (324)
Q Consensus 41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~~ 118 (324)
.|+..+.++.++++. ++.+. .-|+++++.+ .....+..+.+++.+.+.+|.+++|+++.+.. .....+...+.
T Consensus 172 ~~~~~~~~g~lr~i~----ir~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~~~~~~~g~~~~~ 246 (431)
T TIGR00479 172 IYLEHKELGKARHGV----LRIGR-RTGELLLVLRTALEGFPHKEELALELQERYPDVKSICQNINPEKTNVIFGEETEQ 246 (431)
T ss_pred ccccccCcccceEEE----EEEec-cCCCEEEEEEECCCccccHHHHHHHHHHhCCCceEEEEEeCCCCCCeeeCCceEE
Confidence 345455667777766 55543 2477766543 33333455678888888888999998876543 33444556788
Q ss_pred EccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH
Q psy16898 119 LAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194 (324)
Q Consensus 119 l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~ 194 (324)
++|++ . +..+.+|++|.+++..||+.++.+++... +.+. +.++++|||+|||+|.+++.+|+.+.+|+|+|+|+
T Consensus 247 l~G~~-~-~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~ 324 (431)
T TIGR00479 247 IAGEG-P-IYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVP 324 (431)
T ss_pred EeCCC-e-EEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCH
Confidence 89985 2 33446899999999999997776655442 3333 34678999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccc
Q psy16898 195 DSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLT 272 (324)
Q Consensus 195 ~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~ 272 (324)
.|++.|++|++.|+ +. +++++++|+.+++...... ...||.|++|||+.. .++++.+..++
T Consensus 325 ~av~~a~~n~~~~~--~~-nv~~~~~d~~~~l~~~~~~--------------~~~~D~vi~dPPr~G~~~~~l~~l~~l~ 387 (431)
T TIGR00479 325 ESVEKAQQNAELNG--IA-NVEFLAGTLETVLPKQPWA--------------GQIPDVLLLDPPRKGCAAEVLRTIIELK 387 (431)
T ss_pred HHHHHHHHHHHHhC--CC-ceEEEeCCHHHHHHHHHhc--------------CCCCCEEEECcCCCCCCHHHHHHHHhcC
Confidence 99999999999999 86 8999999998876543211 134999999999863 56777766554
Q ss_pred h
Q psy16898 273 R 273 (324)
Q Consensus 273 ~ 273 (324)
+
T Consensus 388 ~ 388 (431)
T TIGR00479 388 P 388 (431)
T ss_pred C
Confidence 4
No 10
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.86 E-value=1.4e-20 Score=181.63 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=152.9
Q ss_pred eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-Cc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCC-Ccccccceee
Q psy16898 41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-RE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQME 117 (324)
Q Consensus 41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~ 117 (324)
.|+..+.++.|+++. ++.+. ..|++++..+ .. ...+..+.+.+.+.+.++++.+|+++.+.. .+...+....
T Consensus 112 ~~~~~~~~g~lr~i~----ir~~~-~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~ 186 (374)
T TIGR02085 112 PYNVAKKKGELKFIL----LTESE-NSGQLMLRFVLRSETKLAQIRRALPWLIEQLPQLEVISVNIQPVHMAILEGEEEI 186 (374)
T ss_pred CccccCCCccceEEE----EEEec-cCCCEEEEEEECCCccchhHHHHHHHHHHHCCCcEEEEEEECCCCCCceECceEE
Confidence 456667778888877 55543 2477766543 22 122344455565666678888887654432 2333344456
Q ss_pred EEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCC
Q psy16898 118 LLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLN 193 (324)
Q Consensus 118 ~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~ 193 (324)
.++|++ + +..+.+|++|.+++..||+.+....|... +...+ .++.+|||+|||+|.+++.+|.++.+|+|+|+|
T Consensus 187 ~l~G~~-~-i~e~~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~ 264 (374)
T TIGR02085 187 FLTEQQ-A-LPERFNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIE 264 (374)
T ss_pred EEcCCC-e-eEEEECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECC
Confidence 678875 3 22335799999999999998887777653 22333 356899999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhcc
Q psy16898 194 PDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVL 271 (324)
Q Consensus 194 ~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l 271 (324)
+.|++.|++|++.|+ ++ +++++++|+.+++... ...||.|++|||+.. ..+++.+..+
T Consensus 265 ~~av~~a~~N~~~~~--~~-~~~~~~~d~~~~~~~~-----------------~~~~D~vi~DPPr~G~~~~~l~~l~~~ 324 (374)
T TIGR02085 265 SEAIACAQQSAQMLG--LD-NLSFAALDSAKFATAQ-----------------MSAPELVLVNPPRRGIGKELCDYLSQM 324 (374)
T ss_pred HHHHHHHHHHHHHcC--CC-cEEEEECCHHHHHHhc-----------------CCCCCEEEECCCCCCCcHHHHHHHHhc
Confidence 999999999999999 86 8999999998876431 123999999999963 3566666554
Q ss_pred chhhcCCCCCCCEEEEEE
Q psy16898 272 TREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 272 ~~~~~~~~~~~g~vh~y~ 289 (324)
++ ..++++.|
T Consensus 325 ~p--------~~ivyvsc 334 (374)
T TIGR02085 325 AP--------KFILYSSC 334 (374)
T ss_pred CC--------CeEEEEEe
Confidence 43 36777776
No 11
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.86 E-value=5.6e-20 Score=173.55 Aligned_cols=204 Identities=17% Similarity=0.209 Sum_probs=143.7
Q ss_pred eccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-Cc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCC-Ccccccceee
Q psy16898 41 TYDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-RE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTI-DNTYRNFQME 117 (324)
Q Consensus 41 ~y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~-~~~~~~~~~~ 117 (324)
.|+..+.++.||++. ++.+. ..|++++..+ .. ...+....+.+.+...++++++|++..+.. .+...+....
T Consensus 52 ~~~~~~~~g~lr~~~----ir~~~-~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~ 126 (315)
T PRK03522 52 PYNVARKRGELKYIL----LTESQ-SDGELMLRFVLRSETKLARLRRALPWLQAQLPQLKVISVNIQPVHMAILEGEEEI 126 (315)
T ss_pred CCcCCCCCceeeEEE----EEeec-CCCCEEEEEEECCCccchhHHHHHHHHHHHCCCCEEEEEEECCCCCCcccCCceE
Confidence 355557778899888 65542 2477766543 32 222333445555666678888886654442 2333344456
Q ss_pred EEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH--HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCC
Q psy16898 118 LLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLN 193 (324)
Q Consensus 118 ~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~ 193 (324)
.++|.+ + ....-+|+.|.+++..||+.+..+++... +.+.+. ++.+|||+|||+|.+++.+|+++++|+|+|+|
T Consensus 127 ~l~g~~-~-~~~~~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s 204 (315)
T PRK03522 127 FLTEQQ-A-LPERFNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEIS 204 (315)
T ss_pred EEeCCC-e-EEEEECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCC
Confidence 678875 2 22234799999999999998886666642 223332 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH--HHHHHHhcc
Q psy16898 194 PDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV--EYVRYLKVL 271 (324)
Q Consensus 194 ~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~--~~l~~~~~l 271 (324)
+.|++.|++|++.|+ +. +++++++|+.++.... ...||.|++|||+... ..++.+..+
T Consensus 205 ~~av~~A~~n~~~~~--l~-~v~~~~~D~~~~~~~~-----------------~~~~D~Vv~dPPr~G~~~~~~~~l~~~ 264 (315)
T PRK03522 205 AEAIACAKQSAAELG--LT-NVQFQALDSTQFATAQ-----------------GEVPDLVLVNPPRRGIGKELCDYLSQM 264 (315)
T ss_pred HHHHHHHHHHHHHcC--CC-ceEEEEcCHHHHHHhc-----------------CCCCeEEEECCCCCCccHHHHHHHHHc
Confidence 999999999999999 85 8999999998875421 1249999999998632 344444333
No 12
>KOG1227|consensus
Probab=99.85 E-value=1.6e-21 Score=176.56 Aligned_cols=208 Identities=22% Similarity=0.210 Sum_probs=162.6
Q ss_pred CCceeEEECCEEEEEeCchhhhhHHHHHHHHHhhCCCce--EEEEcCCCC-CcccccceeeEEccCCCeEEEEEeCCeEE
Q psy16898 60 AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCE--TVVNKAHTI-DNTYRNFQMELLAGKDCMVTMHKENGCTF 136 (324)
Q Consensus 60 ~~~~~d~~G~i~vi~~~~~~~~~~~~I~~~l~~~~~~i~--~V~~k~~~~-~~~~~~~~~~~l~G~~~~~~~~~e~g~~f 136 (324)
+|.+|++||+++++..++-..+.-..|.+.++.....-. ..+.|...+ ....|.+..+.|+|+. -|+.+.+||++|
T Consensus 90 LP~kw~~~g~lvl~~~~sF~~~~W~~~~~e~w~~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~-gWV~~v~NGI~~ 168 (351)
T KOG1227|consen 90 LPLKWEIYGPLVLFPVNSFNHPIWQKIFQELWSVVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDL-GWVKHVQNGITQ 168 (351)
T ss_pred ccccceecCCEEEEeccccCChhHHHHHHHHHHhhhhccchhhhhhccccCccccCCCccccccccc-cceeehhcCeEE
Confidence 899999999999998776544555566666665432111 122233222 3346788999999986 688899999999
Q ss_pred EEeccceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHH-HHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCC
Q psy16898 137 KMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSI-PAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTP 214 (324)
Q Consensus 137 ~id~~~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al-~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~ 214 (324)
.+|+.+.+|+.....|..|+......|+.|+|||+|.|+|++ .+.+.|| .|+|+|.||.+++.+++|++.|+ +.++
T Consensus 169 ~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~--V~~r 246 (351)
T KOG1227|consen 169 IWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANN--VMDR 246 (351)
T ss_pred EechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcc--hHHH
Confidence 999999999999999999999998899999999999999999 6667777 99999999999999999999999 8766
Q ss_pred eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC-hhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898 215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
...+.+|.+.... ....|+|.+.+ |.+...+.-|...|++. .|+++|+|.-.+.
T Consensus 247 ~~i~~gd~R~~~~-------------------~~~AdrVnLGLlPSse~~W~~A~k~Lk~e------ggsilHIHenV~~ 301 (351)
T KOG1227|consen 247 CRITEGDNRNPKP-------------------RLRADRVNLGLLPSSEQGWPTAIKALKPE------GGSILHIHENVKD 301 (351)
T ss_pred HHhhhccccccCc-------------------cccchheeeccccccccchHHHHHHhhhc------CCcEEEEeccccc
Confidence 6667777654322 34589999986 66555566666668875 2459999999987
Q ss_pred CC
Q psy16898 294 MD 295 (324)
Q Consensus 294 ~~ 295 (324)
++
T Consensus 302 s~ 303 (351)
T KOG1227|consen 302 SD 303 (351)
T ss_pred cc
Confidence 76
No 13
>KOG2187|consensus
Probab=99.79 E-value=2.7e-18 Score=166.04 Aligned_cols=250 Identities=16% Similarity=0.232 Sum_probs=166.2
Q ss_pred ccCCChHHHHHhccCCCCCCceeEEECCEEEEEe-----Cc-hhhhhHHHHHHHHHhhCCC----ceEEEEcCCC-CCcc
Q psy16898 42 YDNFSAEDILKAILPDNVAMSSFTSVGHIVHCNL-----RE-ELIEHKFIIGRVLLDKVPS----CETVVNKAHT-IDNT 110 (324)
Q Consensus 42 y~~~~~~~~l~~~~p~~~~~~~~d~~G~i~vi~~-----~~-~~~~~~~~I~~~l~~~~~~----i~~V~~k~~~-~~~~ 110 (324)
|+.+++.|..|.+. +++.+ +-|..+++.+ .. .+...++.|.+.+.+ .|+ ++.+|+-... ++..
T Consensus 256 ~~~~~~~G~wk~Lt----VRt~~-~~~~~~il~i~~~~l~~e~l~e~~~ki~~~f~~-~~~~a~~l~~l~~q~~~~ts~~ 329 (534)
T KOG2187|consen 256 YDDFPKGGFWKQLT----VRTEF-RGGAMAILTIHPCKLATEELTELKKKIEQRFLS-GPGFASGLRVLYLQESGHTSDG 329 (534)
T ss_pred ccccCCCCceeeeE----EEecc-cCceEEEEEEEeecccHHHHHHHHHHHHHHHhc-ccccccceeEEEEecccccccC
Confidence 47788899999988 66433 3233344332 33 344455556665553 232 3444443332 2222
Q ss_pred cccceeeEEccCCCeEEEEEeCCeEEEEeccceeecCcChHHHHH-HHh---hccCCCEEEEEcCCCchhHHHHHhcCCE
Q psy16898 111 YRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHER-VTK---EVREGDLVLDVFAGVGPFSIPAARRGAI 186 (324)
Q Consensus 111 ~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~~f~~~r~~~e~~~-~~~---~~~~g~~VLDl~~G~G~~al~~a~~g~~ 186 (324)
-.+....++.|++ ++ ...-.|++|+|++..|||++..++|... .+. .+..++.++|+|||||.+++.+|++..+
T Consensus 330 ~~~~~~~l~~~~~-~I-~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ 407 (534)
T KOG2187|consen 330 QEGKPLQLVGGDP-YI-TESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKR 407 (534)
T ss_pred CCCCCeEEEcccc-EE-EeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccc
Confidence 3446788898875 32 2235999999999999999998888874 332 2567889999999999999999998889
Q ss_pred EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCccc-EEEECChhhhH--H
Q psy16898 187 VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVA-RVIMNLPATAV--E 263 (324)
Q Consensus 187 V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD-~Vi~npP~~a~--~ 263 (324)
|+|+|++++|++.|++|++.|+ ++ |.+|+++-+.+.+..+.... -..-+ ++|+|||+... .
T Consensus 408 ViGvEi~~~aV~dA~~nA~~Ng--is-Na~Fi~gqaE~~~~sl~~~~-------------~~~~~~v~iiDPpR~Glh~~ 471 (534)
T KOG2187|consen 408 VIGVEISPDAVEDAEKNAQING--IS-NATFIVGQAEDLFPSLLTPC-------------CDSETLVAIIDPPRKGLHMK 471 (534)
T ss_pred eeeeecChhhcchhhhcchhcC--cc-ceeeeecchhhccchhcccC-------------CCCCceEEEECCCcccccHH
Confidence 9999999999999999999999 98 89999998888776654310 01234 78999999755 4
Q ss_pred HHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhh--hcCCCc----eEEEEeecccCCC
Q psy16898 264 YVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK--SYDPSY----ATLIRGIRRLSSD 322 (324)
Q Consensus 264 ~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~--~y~~~~----~~~i~~~~~~~~d 322 (324)
++.+++.++.. .-++++.|.-+.......+... +|.+.. ..+++.|...++.
T Consensus 472 ~ik~l~~~~~~-------~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr~~~~~~VDlfP~T 529 (534)
T KOG2187|consen 472 VIKALRAYKNP-------RRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFRLVKAVGVDLFPHT 529 (534)
T ss_pred HHHHHHhccCc-------cceEEEEcCHHHhhhhHHHhhcCccccccccccceeeeeecccCCCC
Confidence 77777776632 1355666665543333333331 122111 2455666555554
No 14
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.76 E-value=9.6e-17 Score=154.24 Aligned_cols=198 Identities=17% Similarity=0.224 Sum_probs=128.4
Q ss_pred ECCEEEEEeCc-hhhhhHHHHHHHHHhhCCCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEe--CC--eEEEEecc
Q psy16898 67 VGHIVHCNLRE-ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKE--NG--CTFKMDFS 141 (324)
Q Consensus 67 ~G~i~vi~~~~-~~~~~~~~I~~~l~~~~~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e--~g--~~f~id~~ 141 (324)
.|++++..+.. ...+....+++.+.+++|++ ++..+ +....+++|.+ ++. .+- +| +.|++++.
T Consensus 115 ~g~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~-~i~~~---------~~~~~~~~G~~-~i~-e~l~~~~~~~~~~~~~~ 182 (362)
T PRK05031 115 SGEILVSLLYHKKLDEEWEQAAKALRDALFNV-HLIGR---------SRKQKIVLDQD-YVD-ERLPVAGREFIYRQVEN 182 (362)
T ss_pred CCCEEEEEEECCCCChHHHHHHHHHHHHCCCc-EEEec---------CCCcEEEcCCC-EEE-EEEecCCcEEEEEeCCC
Confidence 36665554322 11123345666676677766 55221 11235678875 322 222 56 89999999
Q ss_pred ceeecCcChHHHHH--HHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEE
Q psy16898 142 KVYWNSRLSTEHER--VTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218 (324)
Q Consensus 142 ~~f~~~r~~~e~~~--~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~ 218 (324)
.|||.++.++|... +.+.+. .+.+|||+|||+|.|++++++...+|+|+|+++.|++.|++|++.|+ +. +++++
T Consensus 183 sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~--~~-~v~~~ 259 (362)
T PRK05031 183 SFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANG--ID-NVQII 259 (362)
T ss_pred CeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhC--CC-cEEEE
Confidence 99998887777653 333343 23579999999999999999877799999999999999999999999 86 89999
Q ss_pred eccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhccchhhcCCCCCCCEEEEEEcc
Q psy16898 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKVLTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 219 ~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~ 291 (324)
++|+.+++............ .+.......||.|++|||+.. .+.++.+.. + ..++++.|--
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~--~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~--~--------~~ivyvSC~p 322 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRL--KGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA--Y--------ERILYISCNP 322 (362)
T ss_pred ECCHHHHHHHHhhccccccc--ccccccCCCCCEEEECCCCCCCcHHHHHHHHc--c--------CCEEEEEeCH
Confidence 99999987653211000000 000000124899999999853 234444433 1 3577777654
No 15
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.73 E-value=6.4e-17 Score=154.87 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=87.3
Q ss_pred EeCCeEEEEeccceeecCcChHHHHH--HHhhccC-CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 130 KENGCTFKMDFSKVYWNSRLSTEHER--VTKEVRE-GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 130 ~e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~-g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
.+.++.|++++.+|||.+..+++.+. +++.+.. +..|||+|||+|+||+++|+.+.+|+|||+++.|++.|++|++.
T Consensus 161 ~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 161 QDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp CCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHH
T ss_pred eccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHH
Confidence 45689999999999998888877763 4444442 33899999999999999999999999999999999999999999
Q ss_pred hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH--HHHHHHh
Q psy16898 207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV--EYVRYLK 269 (324)
Q Consensus 207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~--~~l~~~~ 269 (324)
|+ +. |++|+++++.++............. .+-......+|.||+|||+... .+++.+.
T Consensus 241 N~--i~-n~~f~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 241 NG--ID-NVEFIRGDAEDFAKALAKAREFNRL--KGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp TT-----SEEEEE--SHHCCCHHCCS-GGTTG--GGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred cC--CC-cceEEEeeccchhHHHHhhHHHHhh--hhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 99 97 8999999988764432110000000 0000001358999999999643 3555443
No 16
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.69 E-value=6.4e-16 Score=152.42 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=105.0
Q ss_pred eCCeEEEEeccceeecCcChHHHHH--HHhhc--cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEV--REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
.+|+.|++++..||+.++.++|... +++.+ .++.+|||+|||+|.+++.+|+.+++|+|+|+|+.|++.|++|++.
T Consensus 262 ~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~ 341 (443)
T PRK13168 262 EFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR 341 (443)
T ss_pred cCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5799999999999998876666542 34433 4778999999999999999999888999999999999999999999
Q ss_pred hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-HHHHHHhccchhhcCCCCCCCEE
Q psy16898 207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKVLTREEFGKLSRPPVL 285 (324)
Q Consensus 207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~l~~~~~~~~~~~g~v 285 (324)
|+ +. +++++++|+.+.+...... ...||.|++|||+... +.+..+..+++ .+++
T Consensus 342 ~~--~~-~v~~~~~d~~~~l~~~~~~--------------~~~fD~Vi~dPPr~g~~~~~~~l~~~~~--------~~iv 396 (443)
T PRK13168 342 NG--LD-NVTFYHANLEEDFTDQPWA--------------LGGFDKVLLDPPRAGAAEVMQALAKLGP--------KRIV 396 (443)
T ss_pred cC--CC-ceEEEEeChHHhhhhhhhh--------------cCCCCEEEECcCCcChHHHHHHHHhcCC--------CeEE
Confidence 99 86 7999999998865332110 1349999999999632 34444444433 3666
Q ss_pred EEEEc
Q psy16898 286 YLYCF 290 (324)
Q Consensus 286 h~y~f 290 (324)
++.|-
T Consensus 397 yvSCn 401 (443)
T PRK13168 397 YVSCN 401 (443)
T ss_pred EEEeC
Confidence 66663
No 17
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.66 E-value=2e-15 Score=144.56 Aligned_cols=159 Identities=15% Similarity=0.211 Sum_probs=109.4
Q ss_pred eeEEccCCCeEEEEEe--CC--eEEEEeccceeecCcChHHHHH--HHhhcc-CCCEEEEEcCCCchhHHHHHhcCCEEE
Q psy16898 116 MELLAGKDCMVTMHKE--NG--CTFKMDFSKVYWNSRLSTEHER--VTKEVR-EGDLVLDVFAGVGPFSIPAARRGAIVA 188 (324)
Q Consensus 116 ~~~l~G~~~~~~~~~e--~g--~~f~id~~~~f~~~r~~~e~~~--~~~~~~-~g~~VLDl~~G~G~~al~~a~~g~~V~ 188 (324)
..+++|.+ +. .... +| ++|.+++..|||.+..+.+... +.+.+. .+++|||+|||+|.|++.+++...+|+
T Consensus 146 ~~~l~G~~-~~-~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~ 223 (353)
T TIGR02143 146 KKIVLDQD-YV-DETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVL 223 (353)
T ss_pred cEEEcCCC-EE-EEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEE
Confidence 35667775 32 2222 56 8999999999998886666542 334443 245799999999999999998777999
Q ss_pred EEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH-hhhhhcccCCCCCCCCcccEEEECChhhh--HHHH
Q psy16898 189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA-HLVRWSQSEGNSTGGTAVARVIMNLPATA--VEYV 265 (324)
Q Consensus 189 avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l 265 (324)
|+|+++.|++.|++|++.|+ +. +++++++|+.+++...... .+.+ . .+.......||.|++|||+.. ...+
T Consensus 224 ~vE~~~~av~~a~~n~~~~~--~~-~v~~~~~d~~~~~~~~~~~~~~~~-~--~~~~~~~~~~d~v~lDPPR~G~~~~~l 297 (353)
T TIGR02143 224 ATEIAKPSVNAAQYNIAANN--ID-NVQIIRMSAEEFTQAMNGVREFRR-L--KGIDLKSYNCSTIFVDPPRAGLDPDTC 297 (353)
T ss_pred EEECCHHHHHHHHHHHHHcC--CC-cEEEEEcCHHHHHHHHhhcccccc-c--cccccccCCCCEEEECCCCCCCcHHHH
Confidence 99999999999999999999 86 7999999999987542110 0000 0 000000113899999999853 3455
Q ss_pred HHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898 266 RYLKVLTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 266 ~~~~~l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
+.+.. + ..++++.|--.
T Consensus 298 ~~l~~--~--------~~ivYvsC~p~ 314 (353)
T TIGR02143 298 KLVQA--Y--------ERILYISCNPE 314 (353)
T ss_pred HHHHc--C--------CcEEEEEcCHH
Confidence 55543 2 36777776543
No 18
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=139.82 Aligned_cols=118 Identities=22% Similarity=0.345 Sum_probs=94.0
Q ss_pred ceeecCcChHHHHH---HHhhcc---CCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC
Q psy16898 142 KVYWNSRLSTEHER---VTKEVR---EGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQVKT 213 (324)
Q Consensus 142 ~~f~~~r~~~e~~~---~~~~~~---~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~ 213 (324)
.+||++.+...|.. +++.+. ++.+|||+|||+|.+++.+|+. ++ +|+++|+|+.|++.+++|++.|+ +.
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~--~~- 107 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG--LE- 107 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CC-
Confidence 47888887766652 334333 2369999999999999999874 44 99999999999999999999999 87
Q ss_pred CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHH-hccchhhcCCCCCCCEEEEE
Q psy16898 214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYL-KVLTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~-~~l~~~~~~~~~~~g~vh~y 288 (324)
+++++++|+..++.. . ..||+|++|||..+..|++.+ ..++++ +++++.
T Consensus 108 ~~~v~~~Da~~~l~~--~----------------~~fD~V~lDP~Gs~~~~l~~al~~~~~~--------gilyvS 157 (382)
T PRK04338 108 NEKVFNKDANALLHE--E----------------RKFDVVDIDPFGSPAPFLDSAIRSVKRG--------GLLCVT 157 (382)
T ss_pred ceEEEhhhHHHHHhh--c----------------CCCCEEEECCCCCcHHHHHHHHHHhcCC--------CEEEEE
Confidence 688999999887653 1 249999999997777898884 446554 777776
No 19
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.60 E-value=9.1e-15 Score=140.51 Aligned_cols=132 Identities=19% Similarity=0.253 Sum_probs=104.3
Q ss_pred EeCCeEEEEe-ccceeecCcChHHHHHHH---h---hccCC---CEEEEEcCCCchhHHHHHhc--CC-EEEEEeCCHHH
Q psy16898 130 KENGCTFKMD-FSKVYWNSRLSTEHERVT---K---EVREG---DLVLDVFAGVGPFSIPAARR--GA-IVAANDLNPDS 196 (324)
Q Consensus 130 ~e~g~~f~id-~~~~f~~~r~~~e~~~~~---~---~~~~g---~~VLDl~~G~G~~al~~a~~--g~-~V~avD~~~~a 196 (324)
+|+..+|.+. -..+|+||++...|...+ + ...++ -+|||+|||+|.+|+.++++ |+ +|+++|+|+.|
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 4566666663 245899999887776422 2 12233 38999999999999999996 65 99999999999
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhh
Q psy16898 197 YAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREE 275 (324)
Q Consensus 197 ~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~ 275 (324)
++.+++|++.|+ +. +++++++|+..++... ...||+|.+||+..+..|++++.. +++
T Consensus 82 v~~i~~N~~~N~--~~-~~~v~~~Da~~~l~~~-----------------~~~fDvIdlDPfGs~~~fld~al~~~~~-- 139 (374)
T TIGR00308 82 VESIKNNVEYNS--VE-NIEVPNEDAANVLRYR-----------------NRKFHVIDIDPFGTPAPFVDSAIQASAE-- 139 (374)
T ss_pred HHHHHHHHHHhC--CC-cEEEEchhHHHHHHHh-----------------CCCCCEEEeCCCCCcHHHHHHHHHhccc--
Confidence 999999999999 86 7999999999987653 134999999998777789998876 544
Q ss_pred cCCCCCCCEEEEEE
Q psy16898 276 FGKLSRPPVLYLYC 289 (324)
Q Consensus 276 ~~~~~~~g~vh~y~ 289 (324)
+|++++.+
T Consensus 140 ------~glL~vTa 147 (374)
T TIGR00308 140 ------RGLLLVTA 147 (374)
T ss_pred ------CCEEEEEe
Confidence 47888775
No 20
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.59 E-value=1.8e-14 Score=126.31 Aligned_cols=85 Identities=22% Similarity=0.243 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
-+|.+|||+|||+|.+++.++++|+ +|+++|.++.+++.+++|++.|+ +.++++++++|+.+++......
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~--~~~~~~~~~~D~~~~l~~~~~~------- 118 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLK--SGEQAEVVRNSALRALKFLAKK------- 118 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhC--CcccEEEEehhHHHHHHHhhcc-------
Confidence 3688999999999999999999998 99999999999999999999999 8767999999998887543211
Q ss_pred cCCCCCCCCcccEEEECChhhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...||+|++|||+..
T Consensus 119 -------~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 119 -------PTFDNVIYLDPPFFN 133 (189)
T ss_pred -------CCCceEEEECcCCCC
Confidence 123899999999954
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.1e-14 Score=117.02 Aligned_cols=94 Identities=26% Similarity=0.371 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
|.+|||+|||+|.+++.+++.+ .+++|+|+||.+++.++.|+..++ +.++++++++|+.+......
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~----------- 67 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLP----------- 67 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCT-----------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhcc-----------
Confidence 5689999999999999999988 799999999999999999999998 87789999999998863221
Q ss_pred CCCCCCCcccEEEECChhhh------------HHHHHHHhc-cchh
Q psy16898 242 GNSTGGTAVARVIMNLPATA------------VEYVRYLKV-LTRE 274 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~a------------~~~l~~~~~-l~~~ 274 (324)
...||+|++|||+.. ..|++.+.. ++++
T Consensus 68 -----~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 68 -----DGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp -----TT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred -----CceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 245999999999963 245555555 6654
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.57 E-value=1.5e-14 Score=127.67 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=82.5
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.++.+|||+|||+|.+++.++.+++ +|+++|+++.+++.+++|++.++ +. +++++++|+.+++...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~--~~-~v~~~~~D~~~~l~~~---------- 118 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK--AG-NARVVNTNALSFLAQP---------- 118 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC--CC-cEEEEEchHHHHHhhc----------
Confidence 4678999999999999998766655 99999999999999999999999 86 7999999998876421
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHH-hccchhhcCCCCCCCEEEEEEcccCC
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYL-KVLTREEFGKLSRPPVLYLYCFLPKM 294 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~-~~l~~~~~~~~~~~g~vh~y~f~~~~ 294 (324)
...||+|++|||+.. .+.+.. ..+... ..+.+.+++++.+....+
T Consensus 119 -------~~~fDlV~~DPPy~~-g~~~~~l~~l~~~--~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 119 -------GTPHNVVFVDPPFRK-GLLEETINLLEDN--GWLADEALIYVESEVENG 164 (199)
T ss_pred -------CCCceEEEECCCCCC-ChHHHHHHHHHHC--CCcCCCcEEEEEecCCCC
Confidence 124999999999643 222222 223322 122356788887766543
No 23
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.9e-14 Score=121.07 Aligned_cols=86 Identities=30% Similarity=0.341 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.|.+|+|+|||||.+|+.++..|+ +|+|+|++++|++.+++|+..+. +++.|+++|+.++-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~----g~v~f~~~dv~~~~~------------- 107 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL----GDVEFVVADVSDFRG------------- 107 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC----CceEEEEcchhhcCC-------------
Confidence 688999999999999999999987 99999999999999999999854 379999999998633
Q ss_pred CCCCCCCCcccEEEECChhhhH------HHHHHHhccc
Q psy16898 241 EGNSTGGTAVARVIMNLPATAV------EYVRYLKVLT 272 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~l~ 272 (324)
.+|.+|||||-.+. .|++.+....
T Consensus 108 --------~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s 137 (198)
T COG2263 108 --------KFDTVIMNPPFGSQRRHADRPFLLKALEIS 137 (198)
T ss_pred --------ccceEEECCCCccccccCCHHHHHHHHHhh
Confidence 49999999998653 5777776543
No 24
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.56 E-value=1.9e-14 Score=125.53 Aligned_cols=114 Identities=24% Similarity=0.324 Sum_probs=79.8
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
-+|.+|||||||+|.+|++++.+|| +|+.||.|+.+++.+++|++.-+ +.++++++++|+..++.+....
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~--~~~~~~v~~~d~~~~l~~~~~~------- 111 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG--LEDKIRVIKGDAFKFLLKLAKK------- 111 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---GGGEEEEESSHHHHHHHHHHC-------
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC--CCcceeeeccCHHHHHHhhccc-------
Confidence 4789999999999999999999998 99999999999999999999988 8767999999999988765331
Q ss_pred cCCCCCCCCcccEEEECChhhhHHH-HHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEY-VRYLKVLTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~-l~~~~~l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|++|||+..... .+.+..+... ..+.+++++.+-.-.+
T Consensus 112 -------~~~fDiIflDPPY~~~~~~~~~l~~l~~~--~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 112 -------GEKFDIIFLDPPYAKGLYYEELLELLAEN--NLLNEDGLIIIEHSKK 156 (183)
T ss_dssp -------TS-EEEEEE--STTSCHHHHHHHHHHHHT--TSEEEEEEEEEEEETT
T ss_pred -------CCCceEEEECCCcccchHHHHHHHHHHHC--CCCCCCEEEEEEecCC
Confidence 356999999999964332 2222222211 1222346666655555
No 25
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.53 E-value=1.3e-13 Score=128.43 Aligned_cols=107 Identities=22% Similarity=0.236 Sum_probs=83.2
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHh-hc--cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EV--REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~--~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~ 204 (324)
.|+.|.+++..|+ +|..+|... .+. .+ .++.+|||+|||+|.+++.+++. +++|+|+|+|+.|++.|++|+
T Consensus 88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 5788999886554 444444321 222 23 34579999999999999999985 569999999999999999999
Q ss_pred HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+.|+ +.++++++++|+.+.+. ...||.|++|||+..
T Consensus 166 ~~~~--~~~~i~~~~~D~~~~~~-------------------~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 166 ERHG--LEDRVTLIQSDLFAALP-------------------GRKYDLIVSNPPYVD 201 (284)
T ss_pred HHcC--CCCcEEEEECchhhccC-------------------CCCccEEEECCCCCC
Confidence 9999 87689999999865331 124999999999854
No 26
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.51 E-value=3.4e-13 Score=123.42 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHhhcc---CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTKEVR---EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~---~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~ 204 (324)
.|++|.+++..| + |+-.+|... ++..+. .+.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+
T Consensus 53 ~g~~~~v~~~vf-~-pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 53 CGLRIAVDPGVF-V-PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred cCeEEEECCCCc-C-CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 688899998754 4 555665542 223332 2458999999999999999874 569999999999999999999
Q ss_pred HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+.|+ . +++++|+.+.+.... ...||.||+|||+..
T Consensus 131 ~~~~--~----~~~~~D~~~~l~~~~----------------~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 131 ADAG--G----TVHEGDLYDALPTAL----------------RGRVDILAANAPYVP 165 (251)
T ss_pred HHcC--C----EEEEeechhhcchhc----------------CCCEeEEEECCCCCC
Confidence 9887 3 688999877543211 134999999999864
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=1.9e-13 Score=117.79 Aligned_cols=77 Identities=29% Similarity=0.416 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
++.+|||+|||+|.+++.+++++. +|+++|+|+.|++.+++|++.|+ +.+ +++++.|..+...
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~--~~~-v~~~~~d~~~~~~------------ 95 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG--LEN-VEVVQSDLFEALP------------ 95 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT--CTT-EEEEESSTTTTCC------------
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--ccc-ccccccccccccc------------
Confidence 678999999999999999999754 69999999999999999999999 874 9999999876433
Q ss_pred cCCCCCCCCcccEEEECChhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..+||.|++|||..
T Consensus 96 -------~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 96 -------DGKFDLIVSNPPFH 109 (170)
T ss_dssp -------TTCEEEEEE---SB
T ss_pred -------ccceeEEEEccchh
Confidence 14599999999973
No 28
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=124.50 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
...+|||+|||+|.+++.+|++ . ++|++||+.+++++.|++|++.|+ +.++++++++|+.++.+....
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~--l~~ri~v~~~Di~~~~~~~~~-------- 113 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNP--LEERIQVIEADIKEFLKALVF-------- 113 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCc--chhceeEehhhHHHhhhcccc--------
Confidence 4779999999999999999997 4 699999999999999999999999 999999999999998776432
Q ss_pred cCCCCCCCCcccEEEECChhhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a 261 (324)
.+||+||||||+..
T Consensus 114 --------~~fD~Ii~NPPyf~ 127 (248)
T COG4123 114 --------ASFDLIICNPPYFK 127 (248)
T ss_pred --------cccCEEEeCCCCCC
Confidence 35999999999963
No 29
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.48 E-value=3.8e-13 Score=116.33 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=87.1
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
-.|.++||+|||+|.++++++.+|+ +|+.||.|..++..+++|++.-+ +..+++++.+|+..++.....
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~--~~~~~~~~~~da~~~L~~~~~-------- 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALG--LEGEARVLRNDALRALKQLGT-------- 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CccceEEEeecHHHHHHhcCC--------
Confidence 4688999999999999999999998 99999999999999999999888 777899999999977765422
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHHhc---cchhhcCCCCCCCEEEEEEcccC
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV---LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~---l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
...||.|.+|||+. ..+++.... +... +.+++++++.|-.=...
T Consensus 112 -------~~~FDlVflDPPy~-~~l~~~~~~~~~~~~~--~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 112 -------REPFDLVFLDPPYA-KGLLDKELALLLLEEN--GWLKPGALIVVEHDKDV 158 (187)
T ss_pred -------CCcccEEEeCCCCc-cchhhHHHHHHHHHhc--CCcCCCcEEEEEeCCCc
Confidence 12499999999995 444432222 2222 13456677777655543
No 30
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=6.2e-13 Score=125.09 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=83.1
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHh-hccC-C-CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EVRE-G-DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~~~-g-~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~ 204 (324)
.|+.|.+++.. |+ +|..+|... .+. .+.. + .+|||+|||+|.+++.+++. +++|+|+|+|+.|++.|++|+
T Consensus 100 ~g~~f~v~~~v-li-pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 100 CGLEFYVDERV-LV-PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred cCcEEEECCCC-cC-CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 57889998865 44 555444331 222 2332 2 68999999999999999985 569999999999999999999
Q ss_pred HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+.++ +.++++++++|+.+.+.. ..||.|++|||+..
T Consensus 178 ~~~~--l~~~i~~~~~D~~~~l~~-------------------~~fDlIvsNPPyi~ 213 (307)
T PRK11805 178 ERHG--LEDRVTLIESDLFAALPG-------------------RRYDLIVSNPPYVD 213 (307)
T ss_pred HHhC--CCCcEEEEECchhhhCCC-------------------CCccEEEECCCCCC
Confidence 9999 876799999998764321 24999999999964
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.46 E-value=7.8e-13 Score=105.17 Aligned_cols=93 Identities=25% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
||.+|||+|||+|.+++.+++ .+++|+|+|+|+.+++.|++|+...+ ..++++++++|+ ......
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~i~~~~~d~-~~~~~~---------- 67 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEG--LSDRITFVQGDA-EFDPDF---------- 67 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTT--TTTTEEEEESCC-HGGTTT----------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECcc-ccCccc----------
Confidence 578999999999999999999 78899999999999999999997777 777999999999 322211
Q ss_pred cCCCCCCCCcccEEEECC-hh-------hhHHHHHHHhc-cchh
Q psy16898 240 SEGNSTGGTAVARVIMNL-PA-------TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~np-P~-------~a~~~l~~~~~-l~~~ 274 (324)
...||.|+++. .. ....+++.+.. |+++
T Consensus 68 -------~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 68 -------LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp -------SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred -------CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 24599999977 11 12245666665 6665
No 32
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.8e-13 Score=124.87 Aligned_cols=108 Identities=26% Similarity=0.285 Sum_probs=81.9
Q ss_pred eCCeEEEEeccceeecCcChHHHHH--HHhhccCCC-EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHH
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVREGD-LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~g~-~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~ 205 (324)
-.|+.|.++..- +-||..+|... ++....... +|||+|||+|.+++.+|+.+. .|+|+|+|+.|++.|++|++
T Consensus 78 f~gl~~~v~~~v--liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 78 FGGLRFKVDEGV--LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE 155 (280)
T ss_pred ecceeeeeCCCc--eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH
Confidence 367777777654 34666666542 222233333 799999999999999999654 99999999999999999999
Q ss_pred HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH
Q psy16898 206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE 263 (324)
Q Consensus 206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~ 263 (324)
.|+ + .++.++.+|.++-+. .+||.||+|||+...+
T Consensus 156 ~~~--l-~~~~~~~~dlf~~~~--------------------~~fDlIVsNPPYip~~ 190 (280)
T COG2890 156 RNG--L-VRVLVVQSDLFEPLR--------------------GKFDLIVSNPPYIPAE 190 (280)
T ss_pred HcC--C-ccEEEEeeecccccC--------------------CceeEEEeCCCCCCCc
Confidence 999 8 477788777765433 2599999999996543
No 33
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=3.4e-12 Score=110.74 Aligned_cols=124 Identities=20% Similarity=0.216 Sum_probs=89.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++++|||+|||+|.+++.+++.+.+|+++|+|+.+++.+++|++.|+ + +++++++|+.+...
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~--~~~~~~~d~~~~~~------------- 80 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNN--V--GLDVVMTDLFKGVR------------- 80 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEcccccccC-------------
Confidence 366799999999999999999988899999999999999999999988 6 48999999865321
Q ss_pred CCCCCCCCcccEEEECChhhhH-------------------------HHHHHHhccchhhcCCCCCCCEEEEEEcccCCC
Q psy16898 241 EGNSTGGTAVARVIMNLPATAV-------------------------EYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMD 295 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a~-------------------------~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~ 295 (324)
..||.|++|||.... .+++.+.. .++++|.+.+...+....
T Consensus 81 -------~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~Lk~gG~~~~~~~~~~~~ 146 (179)
T TIGR00537 81 -------GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPE-------ILKEGGRVQLIQSSLNGE 146 (179)
T ss_pred -------CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHH-------hhCCCCEEEEEEeccCCh
Confidence 249999999997311 12222222 344568887766665555
Q ss_pred hhHHhHhhhcCCCceEEEEeec
Q psy16898 296 LETKKKIKSYDPSYATLIRGIR 317 (324)
Q Consensus 296 ~~~~~~v~~y~~~~~~~i~~~~ 317 (324)
.+..+..+.. +....+..-.
T Consensus 147 ~~~~~~l~~~--gf~~~~~~~~ 166 (179)
T TIGR00537 147 PDTFDKLDER--GFRYEIVAER 166 (179)
T ss_pred HHHHHHHHhC--CCeEEEEEEe
Confidence 5555555443 3444444433
No 34
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=8.6e-12 Score=112.08 Aligned_cols=78 Identities=24% Similarity=0.292 Sum_probs=67.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
+.++.+|||+|||+|.+++.+++.++ +|+++|+|+.+++.+++|+..++ + +++++++|+.+...
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~--~--~~~~~~~d~~~~~~----------- 98 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG--V--DVDVRRGDWARAVE----------- 98 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC--C--eeEEEECchhhhcc-----------
Confidence 46788999999999999999999776 99999999999999999999998 6 48899999876432
Q ss_pred ccCCCCCCCCcccEEEECChhh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
...||.|++|||+.
T Consensus 99 --------~~~fD~Vi~npPy~ 112 (223)
T PRK14967 99 --------FRPFDVVVSNPPYV 112 (223)
T ss_pred --------CCCeeEEEECCCCC
Confidence 13499999999974
No 35
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=126.02 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=84.5
Q ss_pred eCCeEEEEeccceeecCcChHHHHH--HHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
-.|..|.+++..+. ||..+|... +++.+.++.+|||+|||+|.+++.+++. +++|+|+|+|+.|++.|++|++.
T Consensus 220 F~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~ 297 (423)
T PRK14966 220 FYGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD 297 (423)
T ss_pred ecCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 37889999887543 676666542 3445667789999999999999998863 56999999999999999999998
Q ss_pred hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
++ . +++++++|+.+.... . ...||.|++|||+.
T Consensus 298 ~g--~--rV~fi~gDl~e~~l~--~---------------~~~FDLIVSNPPYI 330 (423)
T PRK14966 298 LG--A--RVEFAHGSWFDTDMP--S---------------EGKWDIIVSNPPYI 330 (423)
T ss_pred cC--C--cEEEEEcchhccccc--c---------------CCCccEEEECCCCC
Confidence 88 5 699999998653110 0 12499999999984
No 36
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.40 E-value=1.6e-12 Score=121.07 Aligned_cols=108 Identities=21% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHhhc--cC-CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTKEV--RE-GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~~--~~-g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~ 204 (324)
.|..|.++... |. ||..+|... ++..+ .. +.+|||+|||+|.+++.+++. +++|+|+|+|+.|++.|++|+
T Consensus 81 ~g~~f~v~~~v-li-Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHV-LI-PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCC-cC-CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 57788888764 33 776666553 22222 22 268999999999999999984 469999999999999999999
Q ss_pred HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
+.++ +.++++++++|+.+.+. ...||.|++|||+...
T Consensus 159 ~~~~--~~~~v~~~~~d~~~~~~-------------------~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 159 EKNQ--LEHRVEFIQSNLFEPLA-------------------GQKIDIIVSNPPYIDE 195 (284)
T ss_pred HHcC--CCCcEEEEECchhccCc-------------------CCCccEEEECCCCCCc
Confidence 9998 86569999999865321 1249999999999643
No 37
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=2.3e-12 Score=116.21 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=91.6
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+|.+|||+|||||.+++.+++.. ++|+++|+|+.|++.|++.+..-+ .. +++++.+||.+++.+.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~--~~-~i~fv~~dAe~LPf~D--------- 117 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG--VQ-NVEFVVGDAENLPFPD--------- 117 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC--cc-ceEEEEechhhCCCCC---------
Confidence 379999999999999999999964 599999999999999999998766 66 4999999999987542
Q ss_pred ccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898 239 QSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK 303 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~ 303 (324)
..||+|.+ |.|+....+-+..|-+||+ |.+.|-.|++...+.......
T Consensus 118 ---------~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg--------G~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 118 ---------NSFDAVTISFGLRNVTDIDKALKEMYRVLKPG--------GRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred ---------CccCEEEeeehhhcCCCHHHHHHHHHHhhcCC--------eEEEEEEcCCCCchhhHHHHH
Confidence 45999988 5665444444444557765 899999999987766655554
No 38
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.40 E-value=5.2e-12 Score=116.46 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=69.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++|||+|||+|..++.+++. ...|+|+|+++.+++.+++|++.++ +. +++++++|+..+...
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g--~~-~v~~~~~D~~~~~~~-------- 137 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCG--VL-NVAVTNFDGRVFGAA-------- 137 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcC--CC-cEEEecCCHHHhhhh--------
Confidence 568899999999999999999873 3489999999999999999999999 86 799999999875332
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...||.|++|||.+.
T Consensus 138 ----------~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 138 ----------VPKFDAILLDAPCSG 152 (264)
T ss_pred ----------ccCCCEEEEcCCCCC
Confidence 124999999999764
No 39
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=1.8e-12 Score=120.79 Aligned_cols=139 Identities=24% Similarity=0.263 Sum_probs=98.1
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n 207 (324)
+.+...+|+...|-.-...+-++- +++ ...+|++|||+|||+|.+|+.+++.|+ +|+|+|++|.|++.|++|++.|
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence 556678888887766555555542 333 456899999999999999999999998 8999999999999999999999
Q ss_pred CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cchhhcCCCCCCCEE
Q psy16898 208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTREEFGKLSRPPVL 285 (324)
Q Consensus 208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~~~~~~~~~~g~v 285 (324)
+ +.+++.+. ...+.. ..+||.|+.|.-...+ .+.+.+.. ++++ |++
T Consensus 208 ~--~~~~~~v~--~~~~~~--------------------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~--------G~l 255 (295)
T PF06325_consen 208 G--VEDRIEVS--LSEDLV--------------------EGKFDLVVANILADVLLELAPDIASLLKPG--------GYL 255 (295)
T ss_dssp T---TTCEEES--CTSCTC--------------------CS-EEEEEEES-HHHHHHHHHHCHHHEEEE--------EEE
T ss_pred C--CCeeEEEE--Eecccc--------------------cccCCEEEECCCHHHHHHHHHHHHHhhCCC--------CEE
Confidence 9 98666542 111111 1359999999866433 45555555 5554 899
Q ss_pred EEEEcccCCChhHHhHh
Q psy16898 286 YLYCFLPKMDLETKKKI 302 (324)
Q Consensus 286 h~y~f~~~~~~~~~~~v 302 (324)
.+..+.....+...+.+
T Consensus 256 IlSGIl~~~~~~v~~a~ 272 (295)
T PF06325_consen 256 ILSGILEEQEDEVIEAY 272 (295)
T ss_dssp EEEEEEGGGHHHHHHHH
T ss_pred EEccccHHHHHHHHHHH
Confidence 99988887555444433
No 40
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.37 E-value=1e-11 Score=119.54 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=74.0
Q ss_pred eeecCcChHHHHHHHhhccC--CCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCC--CCeE
Q psy16898 143 VYWNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVK--TPIS 216 (324)
Q Consensus 143 ~f~~~r~~~e~~~~~~~~~~--g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~--~~v~ 216 (324)
+|--.++..--+.+++.+.. +.+|||+|||+|.+++.++++ +++|+++|+|+.|++.+++|++.|+ .. .+++
T Consensus 207 VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~--~~~~~~v~ 284 (378)
T PRK15001 207 VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM--PEALDRCE 284 (378)
T ss_pred ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--cccCceEE
Confidence 55444444333345565543 469999999999999999986 4699999999999999999999997 54 2689
Q ss_pred EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
++.+|+..... ..+||.|++|||..
T Consensus 285 ~~~~D~l~~~~-------------------~~~fDlIlsNPPfh 309 (378)
T PRK15001 285 FMINNALSGVE-------------------PFRFNAVLCNPPFH 309 (378)
T ss_pred EEEccccccCC-------------------CCCEEEEEECcCcc
Confidence 99998764321 13599999999974
No 41
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.36 E-value=3.9e-12 Score=115.15 Aligned_cols=118 Identities=25% Similarity=0.304 Sum_probs=81.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+|.+|||+|||||.++..++++ .++|+|+|+|+.|++.|++.++..+ .. +++++++|+.++....
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~--~~-~i~~v~~da~~lp~~d------- 114 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG--LQ-NIEFVQGDAEDLPFPD------- 114 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB--S-T-------
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC--CC-CeeEEEcCHHHhcCCC-------
Confidence 568899999999999999999884 3599999999999999999999887 66 8999999999875432
Q ss_pred hcccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898 237 WSQSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD 306 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~ 306 (324)
.+||+|++ |.|+....+-+..+-|+|+ |.+.+-.|++..........+.|.
T Consensus 115 -----------~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG--------G~l~ile~~~p~~~~~~~~~~~y~ 170 (233)
T PF01209_consen 115 -----------NSFDAVTCSFGLRNFPDRERALREMYRVLKPG--------GRLVILEFSKPRNPLLRALYKFYF 170 (233)
T ss_dssp -----------T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE--------EEEEEEEEEB-SSHHHHHHHHH--
T ss_pred -----------CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC--------eEEEEeeccCCCCchhhceeeeee
Confidence 35999988 6666444444444558876 999999999988776666655544
No 42
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.35 E-value=2.6e-12 Score=109.34 Aligned_cols=86 Identities=24% Similarity=0.279 Sum_probs=64.7
Q ss_pred CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
++|+|+|||+|+-++.+|+.+.+|+|+|+++..++.|++|++..| +.++++++++|+.+.+......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~----------- 67 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSN----------- 67 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB--------------
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhcccc-----------
Confidence 379999999999999999998899999999999999999999999 8889999999999977654321
Q ss_pred CCCCCcccEEEECChhhhHHHHH
Q psy16898 244 STGGTAVARVIMNLPATAVEYVR 266 (324)
Q Consensus 244 ~~~~~~fD~Vi~npP~~a~~~l~ 266 (324)
..+|.|+++||=...++..
T Consensus 68 ----~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 68 ----KIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp -------SEEEE---BSSGGGGG
T ss_pred ----ccccEEEECCCCCCccccc
Confidence 1289999999987654443
No 43
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.35 E-value=1.6e-11 Score=114.60 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=97.9
Q ss_pred eCCeEEEEeccceeecCcChHHHH--HHHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHE--RVTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~--~~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~ 206 (324)
.+.....+|+...|-.-...+.+. .++. ...++++|||+|||+|.+++.+++.|+ +|+|+|+++.|++.|++|+..
T Consensus 125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 456778888888775443333332 2232 345789999999999999999999876 999999999999999999999
Q ss_pred hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCE
Q psy16898 207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPV 284 (324)
Q Consensus 207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~ 284 (324)
|+ +.+++.+..+|..... ...||.|++|+.... ..++..+.. ++ ++|+
T Consensus 205 n~--~~~~~~~~~~~~~~~~--------------------~~~fDlVvan~~~~~l~~ll~~~~~~Lk--------pgG~ 254 (288)
T TIGR00406 205 NQ--VSDRLQVKLIYLEQPI--------------------EGKADVIVANILAEVIKELYPQFSRLVK--------PGGW 254 (288)
T ss_pred cC--CCcceEEEeccccccc--------------------CCCceEEEEecCHHHHHHHHHHHHHHcC--------CCcE
Confidence 99 8767777777632211 135999999975432 234444444 44 4599
Q ss_pred EEEEEcccCCChh
Q psy16898 285 LYLYCFLPKMDLE 297 (324)
Q Consensus 285 vh~y~f~~~~~~~ 297 (324)
+.+..+......+
T Consensus 255 li~sgi~~~~~~~ 267 (288)
T TIGR00406 255 LILSGILETQAQS 267 (288)
T ss_pred EEEEeCcHhHHHH
Confidence 9888876554333
No 44
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.35 E-value=6.8e-12 Score=119.24 Aligned_cols=81 Identities=27% Similarity=0.335 Sum_probs=70.8
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+++|++|||+|||+|++++.++..|+.|+|+|+|+.|++.++.|++.++ +. ++.++++|+.++...
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g--~~-~i~~~~~D~~~l~~~---------- 245 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYG--IE-DFFVKRGDATKLPLS---------- 245 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhC--CC-CCeEEecchhcCCcc----------
Confidence 35688999999999999999999999999999999999999999999999 87 489999999875321
Q ss_pred ccCCCCCCCCcccEEEECChhh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
...||.|++|||+.
T Consensus 246 --------~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 246 --------SESVDAIATDPPYG 259 (329)
T ss_pred --------cCCCCEEEECCCCc
Confidence 13599999999984
No 45
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.34 E-value=2.3e-11 Score=106.05 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
++.+|||+|||+|.+++.++.. +++|+|+|.|+.+++.+++|++.++ +. +++++++|+.++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~--~~-~i~~i~~d~~~~~~------------ 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG--LN-NVEIVNGRAEDFQH------------ 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC--CC-CeEEEecchhhccc------------
Confidence 4889999999999999998874 3589999999999999999999998 86 69999999987521
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY 305 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y 305 (324)
...||.|+++.-.....+++.+.. |++ +|.+.++ +......+.....+++
T Consensus 107 -------~~~fD~I~s~~~~~~~~~~~~~~~~Lkp--------gG~lvi~-~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 107 -------EEQFDVITSRALASLNVLLELTLNLLKV--------GGYFLAY-KGKKYLDEIEEAKRKC 157 (181)
T ss_pred -------cCCccEEEehhhhCHHHHHHHHHHhcCC--------CCEEEEE-cCCCcHHHHHHHHHhh
Confidence 135999999851112234444443 444 5777655 3444444444444443
No 46
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.8e-11 Score=113.49 Aligned_cols=134 Identities=23% Similarity=0.255 Sum_probs=92.7
Q ss_pred CCeEEEEeccceeecCcChHHHH--HHHh-hccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHE--RVTK-EVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~--~~~~-~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n 207 (324)
+-+..++|++-.|-.-...+-++ .+++ ...+|.+|||+|||+|.+|+.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence 46778888887664333333332 2333 466899999999999999999999998 7999999999999999999999
Q ss_pred CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEE
Q psy16898 208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVL 285 (324)
Q Consensus 208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~v 285 (324)
+ +...++.-..+..+.+. ...||+||.|.=+.. ..+.+.+.. +++ +|++
T Consensus 209 ~--v~~~~~~~~~~~~~~~~-------------------~~~~DvIVANILA~vl~~La~~~~~~lkp--------gg~l 259 (300)
T COG2264 209 G--VELLVQAKGFLLLEVPE-------------------NGPFDVIVANILAEVLVELAPDIKRLLKP--------GGRL 259 (300)
T ss_pred C--Cchhhhcccccchhhcc-------------------cCcccEEEehhhHHHHHHHHHHHHHHcCC--------CceE
Confidence 9 86312222222222111 246999999974432 235555544 444 5888
Q ss_pred EEEEcccCC
Q psy16898 286 YLYCFLPKM 294 (324)
Q Consensus 286 h~y~f~~~~ 294 (324)
....+....
T Consensus 260 IlSGIl~~q 268 (300)
T COG2264 260 ILSGILEDQ 268 (300)
T ss_pred EEEeehHhH
Confidence 888766654
No 47
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=2.5e-11 Score=119.36 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=71.0
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
.+.+|.+|||+|||+|+.++.++.. +.+|+|+|+++.+++.+++|++..+ +. +++++++|+.++....
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g--~~-~v~~~~~Da~~l~~~~------ 304 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLK--LS-SIEIKIADAERLTEYV------ 304 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-eEEEEECchhhhhhhh------
Confidence 3568999999999999999999884 4599999999999999999999999 86 6999999998764221
Q ss_pred hhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 236 RWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
...||.|++|+|.++.
T Consensus 305 -----------~~~fD~Vl~DaPCsg~ 320 (431)
T PRK14903 305 -----------QDTFDRILVDAPCTSL 320 (431)
T ss_pred -----------hccCCEEEECCCCCCC
Confidence 1349999999999543
No 48
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.33 E-value=7.5e-12 Score=125.27 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=85.3
Q ss_pred eCCeEEEEeccceeecCcChHHHHH--HHhhcc--------------------------CCCEEEEEcCCCchhHHHHHh
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHER--VTKEVR--------------------------EGDLVLDVFAGVGPFSIPAAR 182 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~--~~~~~~--------------------------~g~~VLDl~~G~G~~al~~a~ 182 (324)
-.|+.|.+++.- +.||..+|... +++.+. ++.+|||+|||+|.+++.+++
T Consensus 81 F~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 81 FYSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLC 158 (506)
T ss_pred EcCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHH
Confidence 368888888764 56888777653 222221 346899999999999999887
Q ss_pred c--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 183 R--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 183 ~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
. +++|+|+|+|+.|++.|++|++.++ +.++++++++|+.+.+. ...||.|++|||+.
T Consensus 159 ~~p~~~v~avDis~~al~~A~~N~~~~~--l~~~v~~~~~D~~~~~~-------------------~~~fDlIvsNPPYi 217 (506)
T PRK01544 159 ELPNANVIATDISLDAIEVAKSNAIKYE--VTDRIQIIHSNWFENIE-------------------KQKFDFIVSNPPYI 217 (506)
T ss_pred HCCCCeEEEEECCHHHHHHHHHHHHHcC--CccceeeeecchhhhCc-------------------CCCccEEEECCCCC
Confidence 3 5699999999999999999999998 87789999999865321 13499999999986
Q ss_pred h
Q psy16898 261 A 261 (324)
Q Consensus 261 a 261 (324)
.
T Consensus 218 ~ 218 (506)
T PRK01544 218 S 218 (506)
T ss_pred C
Confidence 4
No 49
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.32 E-value=2.4e-11 Score=110.31 Aligned_cols=106 Identities=23% Similarity=0.257 Sum_probs=78.7
Q ss_pred CCeEEEEeccceeecCcChHHHH--HHHhhcc-CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHE--RVTKEVR-EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~--~~~~~~~-~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
.|..|.++...+ .++..++.. .+++.+. .+.+|||+|||+|.+++.+++. ++.|+|+|+++.+++.+++|+..
T Consensus 56 ~~~~~~~~~~~~--~p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 56 YGLDFKVSPGVL--IPRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eceEEEECCCcc--cCCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 344566554433 233333332 2334443 4459999999999999999985 56999999999999999999999
Q ss_pred hCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 207 NERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 207 n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
++ +. ++.++++|+.+... ...||.|++|||+..
T Consensus 134 ~~--~~-~~~~~~~d~~~~~~-------------------~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 134 LG--LD-NVTFLQSDWFEPLP-------------------GGKFDLIVSNPPYIP 166 (251)
T ss_pred cC--CC-eEEEEECchhccCc-------------------CCceeEEEECCCCCc
Confidence 98 86 79999999876321 135999999999864
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.31 E-value=1.7e-11 Score=113.41 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=82.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
+++|++|||+|||.|.+++.+|++ |++|+|+.+|++..+.+++.++..+ +.+++++..+|.+++..
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~~~~----------- 126 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRDLPG----------- 126 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG--------------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccccCC-----------
Confidence 679999999999999999999997 9999999999999999999999988 98899999999887533
Q ss_pred ccCCCCCCCCcccEEEEC-----C-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHH------hHhhhc
Q psy16898 239 QSEGNSTGGTAVARVIMN-----L-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETK------KKIKSY 305 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~n-----p-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~------~~v~~y 305 (324)
.||.||+= . +..-..|+..+.. |+|+ |.+.++.++........ .++.+|
T Consensus 127 ----------~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg--------G~~~lq~i~~~~~~~~~~~~~~~~~i~ky 188 (273)
T PF02353_consen 127 ----------KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG--------GRLVLQTITHRDPPYHAERRSSSDFIRKY 188 (273)
T ss_dssp ----------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT--------EEEEEEEEEE--HHHHHCTTCCCHHHHHH
T ss_pred ----------CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC--------cEEEEEecccccccchhhcCCCceEEEEe
Confidence 39998872 2 1222356666666 7765 77777766665433222 567666
Q ss_pred -CCCce
Q psy16898 306 -DPSYA 310 (324)
Q Consensus 306 -~~~~~ 310 (324)
.|+..
T Consensus 189 iFPgg~ 194 (273)
T PF02353_consen 189 IFPGGY 194 (273)
T ss_dssp TSTTS-
T ss_pred eCCCCC
Confidence 56655
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.31 E-value=1.4e-11 Score=113.31 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=90.6
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
+++|++|||+|||.|.+++.+|++ |++|+|+++|+++.+.+++.++.-| +.+++++...|-+++..
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~~e----------- 136 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDFEE----------- 136 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEecccccccc-----------
Confidence 679999999999999999999996 8999999999999999999999999 88899999999887643
Q ss_pred ccCCCCCCCCcccEEEECC--hhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh--hHHhHhhhc-CCC
Q psy16898 239 QSEGNSTGGTAVARVIMNL--PAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL--ETKKKIKSY-DPS 308 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~np--P~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~--~~~~~v~~y-~~~ 308 (324)
.||.||+== -.. -..|+..+.. |++ +|.+..+++.....+ ....++.+| .|+
T Consensus 137 ----------~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~--------~G~~llh~I~~~~~~~~~~~~~i~~yiFPg 198 (283)
T COG2230 137 ----------PFDRIVSVGMFEHVGKENYDDFFKKVYALLKP--------GGRMLLHSITGPDQEFRRFPDFIDKYIFPG 198 (283)
T ss_pred ----------ccceeeehhhHHHhCcccHHHHHHHHHhhcCC--------CceEEEEEecCCCcccccchHHHHHhCCCC
Confidence 288887620 001 1125555544 444 588887877765432 455666554 465
Q ss_pred ce
Q psy16898 309 YA 310 (324)
Q Consensus 309 ~~ 310 (324)
..
T Consensus 199 G~ 200 (283)
T COG2230 199 GE 200 (283)
T ss_pred Cc
Confidence 54
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.31 E-value=2.1e-11 Score=106.70 Aligned_cols=105 Identities=21% Similarity=0.111 Sum_probs=81.1
Q ss_pred HhhccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898 157 TKEVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 157 ~~~~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
...++++.+|||+|||+|.+++.+++ .+++|+|+|.|+.+++.|++|++.++ ++ +++++++|+.++..
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--l~-~i~~~~~d~~~~~~------- 109 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--LK-NVTVVHGRAEEFGQ------- 109 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--CC-CEEEEeccHhhCCC-------
Confidence 34466789999999999999999886 46799999999999999999999999 87 59999999987432
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||.|+++-=.....++..+.. +++ +|.+.+..+.
T Consensus 110 ------------~~~fDlV~~~~~~~~~~~l~~~~~~Lkp--------GG~lv~~~~~ 147 (187)
T PRK00107 110 ------------EEKFDVVTSRAVASLSDLVELCLPLLKP--------GGRFLALKGR 147 (187)
T ss_pred ------------CCCccEEEEccccCHHHHHHHHHHhcCC--------CeEEEEEeCC
Confidence 134999999742222346665554 555 4887766544
No 53
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.31 E-value=6.6e-11 Score=104.39 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=84.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.++ +.++++++++|+.+++...
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~------- 108 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTI------- 108 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhc-------
Confidence 558899999999999999999873 3599999999999999999999998 7668999999998765431
Q ss_pred hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKI 302 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v 302 (324)
...||.|+++.... ...+++.+.. +++ +|.+.++...........+..
T Consensus 109 ----------~~~~D~V~~~~~~~~~~~~l~~~~~~Lkp--------gG~lv~~~~~~~~~~~~~~~l 158 (198)
T PRK00377 109 ----------NEKFDRIFIGGGSEKLKEIISASWEIIKK--------GGRIVIDAILLETVNNALSAL 158 (198)
T ss_pred ----------CCCCCEEEECCCcccHHHHHHHHHHHcCC--------CcEEEEEeecHHHHHHHHHHH
Confidence 13499999975321 2345555544 554 588876554333333333333
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.31 E-value=5.5e-11 Score=113.46 Aligned_cols=132 Identities=16% Similarity=0.064 Sum_probs=91.3
Q ss_pred EEeCCeEEEEeccceeecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHH
Q psy16898 129 HKENGCTFKMDFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 129 ~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~ 204 (324)
+...++.+...+.-|+++.--.. -..+++.+. ...+|||+|||+|.+++.+++++ .+|+++|+|+.|++.+++|+
T Consensus 162 y~~~~l~i~~~pgvFs~~~lD~g-t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl 240 (342)
T PRK09489 162 YQVDGLTVKTLPGVFSRDGLDVG-SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL 240 (342)
T ss_pred eecCCEEEEeCCCCCCCCCCCHH-HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 33456677766665555443222 123444333 34589999999999999999863 59999999999999999999
Q ss_pred HHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchh
Q psy16898 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTRE 274 (324)
Q Consensus 205 ~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~ 274 (324)
+.|+ +. .+++.+|+.... ...||.||+|||... ..++..+.. |++
T Consensus 241 ~~n~--l~--~~~~~~D~~~~~--------------------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp- 295 (342)
T PRK09489 241 AANG--LE--GEVFASNVFSDI--------------------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS- 295 (342)
T ss_pred HHcC--CC--CEEEEccccccc--------------------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc-
Confidence 9999 75 577888875421 134999999999632 345544444 554
Q ss_pred hcCCCCCCCEEEEEEcccC
Q psy16898 275 EFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 275 ~~~~~~~~g~vh~y~f~~~ 293 (324)
+|.+.+.....-
T Consensus 296 -------gG~L~iVan~~l 307 (342)
T PRK09489 296 -------GGELRIVANAFL 307 (342)
T ss_pred -------CCEEEEEEeCCC
Confidence 588876654443
No 55
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=6.6e-11 Score=104.16 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=79.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.+++|++.++ +. +++++++|+.+.+...
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~--~~-~v~~~~~d~~~~~~~~-------- 106 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG--VK-NVEVIEGSAPECLAQL-------- 106 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC--CC-CeEEEECchHHHHhhC--------
Confidence 347889999999999999999863 4699999999999999999999998 75 7999999997643321
Q ss_pred cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...+|.++++.......+++.+.. |++ +|.+.++....
T Consensus 107 ---------~~~~d~v~~~~~~~~~~~l~~~~~~Lkp--------gG~li~~~~~~ 145 (196)
T PRK07402 107 ---------APAPDRVCIEGGRPIKEILQAVWQYLKP--------GGRLVATASSL 145 (196)
T ss_pred ---------CCCCCEEEEECCcCHHHHHHHHHHhcCC--------CeEEEEEeecH
Confidence 123688888754322345555544 554 48887776543
No 56
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.7e-11 Score=110.89 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=77.0
Q ss_pred CCeEEEEeccceeecCcChHHHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHh
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n 207 (324)
.+++|.-++. +|--.++..--+.+++.+. .+.+|||+|||.|.+|+.+|+.. .+|+.+|+|..|++.+++|++.|
T Consensus 127 ~~~~~~t~pG-VFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 127 HELTFKTLPG-VFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred CceEEEeCCC-CCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 4455555554 4432333323334555543 35599999999999999999954 59999999999999999999999
Q ss_pred CCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 208 ERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 208 ~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
+ ++ +..++..|..+-.. .+||.||+|||-.
T Consensus 206 ~--~~-~~~v~~s~~~~~v~--------------------~kfd~IisNPPfh 235 (300)
T COG2813 206 G--VE-NTEVWASNLYEPVE--------------------GKFDLIISNPPFH 235 (300)
T ss_pred C--CC-ccEEEEeccccccc--------------------ccccEEEeCCCcc
Confidence 9 87 44677777765332 2499999999984
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=4.7e-11 Score=103.50 Aligned_cols=79 Identities=25% Similarity=0.414 Sum_probs=67.6
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCC-eEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTP-ISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~-v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.++.+|||+|||+|.++..+++.+++|+++|+|+.+++.+++|+..++ +.++ +.++++|..+...+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~~----------- 88 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNN--IRNNGVEVIRSDLFEPFRG----------- 88 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcC--CCCcceEEEeccccccccc-----------
Confidence 578899999999999999999998899999999999999999999988 7533 88999997653211
Q ss_pred cCCCCCCCCcccEEEECChhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..||.|++|||..
T Consensus 89 --------~~~d~vi~n~p~~ 101 (188)
T PRK14968 89 --------DKFDVILFNPPYL 101 (188)
T ss_pred --------cCceEEEECCCcC
Confidence 2499999999974
No 58
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.27 E-value=4.1e-11 Score=101.03 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=79.2
Q ss_pred cCCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+++.+|||+|||+|.++..+++ .+++++|+|+|+.+++.|+++++.++ ++ +++++++|+.+ +....
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~-l~~~~------- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIED-LPQEL------- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTC-GCGCS-------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhc-ccccc-------
Confidence 4678999999999999999994 26799999999999999999999999 87 89999999998 33210
Q ss_pred cccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||+|+++.+.. ...+++.+.. ++++ |.+.+..+.
T Consensus 71 ---------~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~--------G~~i~~~~~ 112 (152)
T PF13847_consen 71 ---------EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPG--------GILIISDPN 112 (152)
T ss_dssp ---------STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEE--------EEEEEEEEE
T ss_pred ---------CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCC--------cEEEEEECC
Confidence 02499999986542 2345666555 6664 776666555
No 59
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.25 E-value=3.5e-11 Score=107.36 Aligned_cols=100 Identities=25% Similarity=0.254 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
+|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.|+..+..++ +. +.+.+..+.++...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g--v~--i~y~~~~~edl~~~------------- 121 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESG--VN--IDYRQATVEDLASA------------- 121 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc--cc--ccchhhhHHHHHhc-------------
Confidence 78899999999999999999999999999999999999999999999 75 77777777776543
Q ss_pred CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
+.+||+|++. .|. +..|+.+... +||+ |++...+.-+
T Consensus 122 -----~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~--------G~lf~STinr 164 (243)
T COG2227 122 -----GGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPG--------GILFLSTINR 164 (243)
T ss_pred -----CCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCC--------cEEEEecccc
Confidence 3569999884 444 3457777766 5554 7766665544
No 60
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.25 E-value=8.6e-11 Score=116.10 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=69.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++|||+|||+|.+++.+++. +++|+|+|+++.+++.+++|++.++ +. +++++++|+.++.....
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g--~~-~v~~~~~D~~~~~~~~~------ 318 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG--LT-NIETKALDARKVHEKFA------ 318 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeCCcccccchhc------
Confidence 457899999999999999999984 3599999999999999999999999 87 69999999987542211
Q ss_pred hcccCCCCCCCCcccEEEECChhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..||.|++|||.+
T Consensus 319 -----------~~fD~Vl~D~Pcs 331 (444)
T PRK14902 319 -----------EKFDKILVDAPCS 331 (444)
T ss_pred -----------ccCCEEEEcCCCC
Confidence 2499999999964
No 61
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.25 E-value=1.6e-10 Score=105.77 Aligned_cols=134 Identities=25% Similarity=0.260 Sum_probs=90.6
Q ss_pred eEEEEeccceeecCcChHHHH---HHHhhccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCC
Q psy16898 134 CTFKMDFSKVYWNSRLSTEHE---RVTKEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNER 209 (324)
Q Consensus 134 ~~f~id~~~~f~~~r~~~e~~---~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~ 209 (324)
....+++...|-.-...+-+. .+.....++.+|||+|||+|.+++.+++.|+ +|+|+|+|+.+++.|++|++.|+
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~- 166 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG- 166 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-
Confidence 345566655444322222221 1222356889999999999999999988887 69999999999999999999999
Q ss_pred CCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898 210 QVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYL 287 (324)
Q Consensus 210 ~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~ 287 (324)
+.+++.+..+|. .||.|++|..... ..+++.+.. ++ ++|.+.+
T Consensus 167 -~~~~~~~~~~~~--------------------------~fD~Vvani~~~~~~~l~~~~~~~Lk--------pgG~lil 211 (250)
T PRK00517 167 -VELNVYLPQGDL--------------------------KADVIVANILANPLLELAPDLARLLK--------PGGRLIL 211 (250)
T ss_pred -CCceEEEccCCC--------------------------CcCEEEEcCcHHHHHHHHHHHHHhcC--------CCcEEEE
Confidence 754566554442 2999999975432 234444443 44 4589888
Q ss_pred EEcccCCChhHHhHhh
Q psy16898 288 YCFLPKMDLETKKKIK 303 (324)
Q Consensus 288 y~f~~~~~~~~~~~v~ 303 (324)
..+.........+..+
T Consensus 212 sgi~~~~~~~v~~~l~ 227 (250)
T PRK00517 212 SGILEEQADEVLEAYE 227 (250)
T ss_pred EECcHhhHHHHHHHHH
Confidence 8777655544444443
No 62
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.24 E-value=7.4e-11 Score=104.53 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|++.++ +. ++.++++|+.+.+.....
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~--~~-~v~~~~~d~~~~l~~~~~-------- 108 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG--LT-NLRLLCGDAVEVLLDMFP-------- 108 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC--CC-CEEEEecCHHHHHHHHcC--------
Confidence 5779999999999999999874 4589999999999999999999998 85 799999999433332111
Q ss_pred cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
...||.|+++.|.. ...++..+.. |++ +|.+.+.+....
T Consensus 109 -------~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp--------gG~l~i~~~~~~ 160 (202)
T PRK00121 109 -------DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP--------GGEIHFATDWEG 160 (202)
T ss_pred -------ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC--------CCEEEEEcCCHH
Confidence 13599999976531 1346666655 555 488887654433
No 63
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=8.1e-11 Score=103.85 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=72.4
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++.+|||+|||+|.+++.+|++|.+|+|+|+|+.|++.+++++..++ +. ++++..+|+.++..
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~--~~-~v~~~~~d~~~~~~------------- 92 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAEN--LD-NLHTAVVDLNNLTF------------- 92 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-cceEEecChhhCCc-------------
Confidence 366899999999999999999999999999999999999999999888 76 68999999765421
Q ss_pred CCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchh
Q psy16898 241 EGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~ 274 (324)
...||.|+++.. .....++..+.. |+++
T Consensus 93 ------~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 93 ------DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred ------CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC
Confidence 124999987632 223456666655 5654
No 64
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=9.2e-11 Score=115.91 Aligned_cols=114 Identities=20% Similarity=0.173 Sum_probs=84.2
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+|++|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++|++.++ +. +++++++|+.++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~~-~v~~~~~Da~~~~~--------- 315 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG--IT-IIETIEGDARSFSP--------- 315 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC--CC-eEEEEeCccccccc---------
Confidence 457899999999999999988873 4599999999999999999999999 86 79999999987532
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHH---------------HHhc----cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVR---------------YLKV----LTREEFGKLSRPPVLYLYCFLPKMD 295 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~---------------~~~~----l~~~~~~~~~~~g~vh~y~f~~~~~ 295 (324)
...||.|++|+|.++...+. .+.. +-......+++||.+.+.+|+-..+
T Consensus 316 ----------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~ 383 (445)
T PRK14904 316 ----------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE 383 (445)
T ss_pred ----------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence 13499999999985432211 0100 0001123456789988887777533
No 65
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.24 E-value=1.3e-10 Score=108.40 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
++.+|||+|||+|.+++.++++|.+|+|+|+|+.|++.++++++.++ + ++++...|+.....
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~--l--~v~~~~~D~~~~~~-------------- 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKEN--L--NIRTGLYDINSASI-------------- 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--C--ceEEEEechhcccc--------------
Confidence 45599999999999999999999999999999999999999999988 7 48888888765311
Q ss_pred CCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchh
Q psy16898 242 GNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~ 274 (324)
...||.|++... .....++..+.. ++++
T Consensus 182 -----~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 182 -----QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred -----cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 135999988632 222345555544 5543
No 66
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.23 E-value=2.8e-10 Score=98.18 Aligned_cols=115 Identities=16% Similarity=0.119 Sum_probs=90.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+|++++|+|||||++++.++. ..++|+|+|-++++++..++|++..+ ++ |++++.+|+.+.+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg--~~-n~~vv~g~Ap~~L~~~-------- 100 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG--VD-NLEVVEGDAPEALPDL-------- 100 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC--CC-cEEEEeccchHhhcCC--------
Confidence 56899999999999999999995 45699999999999999999999999 87 9999999999988753
Q ss_pred cccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIK 303 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~ 303 (324)
.+||+|++.==..-.+.++.+.. |+++ |.+..-...-.......++.+
T Consensus 101 ----------~~~daiFIGGg~~i~~ile~~~~~l~~g--------grlV~naitlE~~~~a~~~~~ 149 (187)
T COG2242 101 ----------PSPDAIFIGGGGNIEEILEAAWERLKPG--------GRLVANAITLETLAKALEALE 149 (187)
T ss_pred ----------CCCCEEEECCCCCHHHHHHHHHHHcCcC--------CeEEEEeecHHHHHHHHHHHH
Confidence 24999999754434456777665 6654 777766655554444444443
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.23 E-value=1.4e-10 Score=101.36 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=81.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.++.+|||+|||+|.+++.++++ +++|+++|+|+.+++.|++|++.++ +. +++++++|+...+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~--~~-~i~~~~~d~~~~~----------- 94 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG--CG-NIDIIPGEAPIEL----------- 94 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC--CC-CeEEEecCchhhc-----------
Confidence 457889999999999999999985 3599999999999999999999998 76 7999999974311
Q ss_pred cccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS 304 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~ 304 (324)
...||.|+++.... ...+++.+.. |++ +|.+.+.........+..+..+.
T Consensus 95 ---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~--------gG~lv~~~~~~~~~~~~~~~l~~ 146 (187)
T PRK08287 95 ---------PGKADAIFIGGSGGNLTAIIDWSLAHLHP--------GGRLVLTFILLENLHSALAHLEK 146 (187)
T ss_pred ---------CcCCCEEEECCCccCHHHHHHHHHHhcCC--------CeEEEEEEecHhhHHHHHHHHHH
Confidence 12499999975421 2234444433 544 58876654444444444444443
No 68
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1.4e-10 Score=114.04 Aligned_cols=82 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+|++|||+|||+|..++.+++.+ .+|+|+|+|+.+++.+++|++.++ +. ++++++|+.+..... .
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g--~~--~~~~~~D~~~~~~~~-~------ 310 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLG--LK--ATVIVGDARDPAQWW-D------ 310 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcC--CC--eEEEEcCcccchhhc-c------
Confidence 4589999999999999999999853 599999999999999999999998 75 789999997642210 0
Q ss_pred cccCCCCCCCCcccEEEECChhhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...||.|++|||.++
T Consensus 311 ---------~~~fD~Vl~D~Pcs~ 325 (427)
T PRK10901 311 ---------GQPFDRILLDAPCSA 325 (427)
T ss_pred ---------cCCCCEEEECCCCCc
Confidence 135999999999863
No 69
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=106.60 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=77.8
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++.+|||+|||+|.+++.+++.|.+|+++|+|+.+++.|++++...+ +.++++++++|+.++....
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~----------- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHL----------- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhc-----------
Confidence 356799999999999999999999999999999999999999999888 7668999999998864321
Q ss_pred CCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 241 EGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
...||.|+++..- ....++..+.. +++ ||.+.+.
T Consensus 110 ------~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkp--------gG~l~i~ 148 (255)
T PRK11036 110 ------ETPVDLILFHAVLEWVADPKSVLQTLWSVLRP--------GGALSLM 148 (255)
T ss_pred ------CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCC--------CeEEEEE
Confidence 1359999986331 12234555544 555 4776543
No 70
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=1.4e-10 Score=114.17 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=69.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++|||+|||+|+.++.+++. ..+|+|+|+++.+++.+++|++.++ +. +++++++|+.++......
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g--~~-~v~~~~~D~~~~~~~~~~----- 321 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLG--LK-SIKILAADSRNLLELKPQ----- 321 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-eEEEEeCChhhccccccc-----
Confidence 457899999999999999999984 2499999999999999999999999 87 699999999876421100
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
....||.|++|+|.++
T Consensus 322 ---------~~~~fD~Vl~DaPCSg 337 (434)
T PRK14901 322 ---------WRGYFDRILLDAPCSG 337 (434)
T ss_pred ---------ccccCCEEEEeCCCCc
Confidence 0135999999999753
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.21 E-value=1.2e-10 Score=102.39 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+.++||+|||+|.+++.+|++ .+.|+|+|+++.+++.|++|+..++ +. +++++++|+.+++.....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--l~-ni~~i~~d~~~~~~~~~~-------- 84 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--LK-NLHVLCGDANELLDKFFP-------- 84 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--CC-CEEEEccCHHHHHHhhCC--------
Confidence 4569999999999999999985 5699999999999999999999988 87 899999999987643221
Q ss_pred cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...+|.|++|+|.- ...++..+.. |++ ||.+++.+-..
T Consensus 85 -------~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp--------gG~l~~~td~~ 135 (194)
T TIGR00091 85 -------DGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK--------GGVIHFKTDNE 135 (194)
T ss_pred -------CCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCC--------CCEEEEEeCCH
Confidence 13599999997652 0246666555 665 48887655433
No 72
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.20 E-value=5.7e-11 Score=111.05 Aligned_cols=104 Identities=17% Similarity=0.269 Sum_probs=79.2
Q ss_pred CeEEEEeccceeecCcChHHHHHHHh--hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Q psy16898 133 GCTFKMDFSKVYWNSRLSTEHERVTK--EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQ 210 (324)
Q Consensus 133 g~~f~id~~~~f~~~r~~~e~~~~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~ 210 (324)
|++.+-.+++-|+.+....+ ++++ .+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++..++
T Consensus 7 ~~~~kk~~GQnFL~d~~i~~--~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~-- 82 (294)
T PTZ00338 7 GMVFNKKFGQHILKNPLVLD--KIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSP-- 82 (294)
T ss_pred CcCcCCCCCccccCCHHHHH--HHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcC--
Confidence 33444444554543332222 3444 35688999999999999999999988899999999999999999998776
Q ss_pred CCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 211 VKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 211 l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..++++++++|+.+... ..||.||.|||+.
T Consensus 83 ~~~~v~ii~~Dal~~~~--------------------~~~d~VvaNlPY~ 112 (294)
T PTZ00338 83 LASKLEVIEGDALKTEF--------------------PYFDVCVANVPYQ 112 (294)
T ss_pred CCCcEEEEECCHhhhcc--------------------cccCEEEecCCcc
Confidence 55689999999987421 1389999999995
No 73
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.20 E-value=4.3e-11 Score=104.13 Aligned_cols=82 Identities=30% Similarity=0.424 Sum_probs=62.6
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhcCC--E---------EEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARRGA--I---------VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~g~--~---------V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~ 227 (324)
...+|+.|||.|||+|++.+++|..+. . ++|.|+++.+++.+++|++..+ +.+.+.+.+.|+.++..
T Consensus 25 ~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 25 GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--VEDYIDFIQWDARELPL 102 (179)
T ss_dssp T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---CGGEEEEE--GGGGGG
T ss_pred CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--cCCceEEEecchhhccc
Confidence 356889999999999999999988432 4 8899999999999999999988 87789999999998762
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
. ...+|.||+|||+.
T Consensus 103 ~------------------~~~~d~IvtnPPyG 117 (179)
T PF01170_consen 103 P------------------DGSVDAIVTNPPYG 117 (179)
T ss_dssp T------------------TSBSCEEEEE--ST
T ss_pred c------------------cCCCCEEEECcchh
Confidence 1 13599999999995
No 74
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.20 E-value=1.8e-10 Score=92.82 Aligned_cols=95 Identities=26% Similarity=0.303 Sum_probs=73.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.++.+|||+|||+|.++..++++ +.+|+++|+|+.+++.+++|++.++ +. +++++.+|+.+.+...
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~-------- 85 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG--VS-NIVIVEGDAPEALEDS-------- 85 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC--CC-ceEEEeccccccChhh--------
Confidence 346789999999999999999985 4699999999999999999999888 76 7999999977543221
Q ss_pred cccCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~ 274 (324)
...||.|+++.+. ...++++.+.. |+++
T Consensus 86 ---------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 86 ---------LPEPDRVFIGGSGGLLQEILEAIWRRLRPG 115 (124)
T ss_pred ---------cCCCCEEEECCcchhHHHHHHHHHHHcCCC
Confidence 1349999997643 23456665555 6654
No 75
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.20 E-value=2.9e-10 Score=100.13 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
++.+|||+|||+|.+++.+|++|++|+|+|+|+.|++.+++++..++ +. +.+..+|+.....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~--~~--v~~~~~d~~~~~~-------------- 91 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKAREN--LP--LRTDAYDINAAAL-------------- 91 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhC--CC--ceeEeccchhccc--------------
Confidence 46799999999999999999999999999999999999999999888 74 7777777653211
Q ss_pred CCCCCCCcccEEEECChh------hhHHHHHHHhc-cchh
Q psy16898 242 GNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~ 274 (324)
...||.|+++.+. ....++..+.. |+++
T Consensus 92 -----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 92 -----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred -----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 1249999887442 22345555544 5554
No 76
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.20 E-value=1.6e-10 Score=109.23 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
+|.+|||+|||+|.++..+++.|++|+|+|+++.+++.|++++..++ ...+++++++|+.++...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~l~~~------------- 195 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEKLADE------------- 195 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHHhhhc-------------
Confidence 57799999999999999999999999999999999999999988776 545799999999876432
Q ss_pred CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||.|++. .+. ...++..+.. |+++ |.+.+.+..
T Consensus 196 -----~~~FD~Vi~~~vLeHv~d-~~~~L~~l~r~LkPG--------G~liist~n 237 (322)
T PLN02396 196 -----GRKFDAVLSLEVIEHVAN-PAEFCKSLSALTIPN--------GATVLSTIN 237 (322)
T ss_pred -----cCCCCEEEEhhHHHhcCC-HHHHHHHHHHHcCCC--------cEEEEEECC
Confidence 1359999873 222 2357777766 6654 666655543
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=2.6e-10 Score=105.18 Aligned_cols=107 Identities=23% Similarity=0.255 Sum_probs=77.9
Q ss_pred CCeEEEEeccceeecCcChHHHHH--HHhh--ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH
Q psy16898 132 NGCTFKMDFSKVYWNSRLSTEHER--VTKE--VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 132 ~g~~f~id~~~~f~~~r~~~e~~~--~~~~--~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~ 205 (324)
.|..|.++... +.+|..+|... ++.. ..++.+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+.
T Consensus 76 ~~~~~~~~~~~--lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 76 WGLDFKVSPGV--LIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCcEEEECCCc--eeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 34566666542 24555555432 2222 3467799999999999999999854 699999999999999999998
Q ss_pred HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 206 ~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
++ ...++.++++|+.+... ...||.|++|||+...
T Consensus 154 -~~--~~~~i~~~~~d~~~~~~-------------------~~~fD~Iv~npPy~~~ 188 (275)
T PRK09328 154 -HG--LGARVEFLQGDWFEPLP-------------------GGRFDLIVSNPPYIPE 188 (275)
T ss_pred -hC--CCCcEEEEEccccCcCC-------------------CCceeEEEECCCcCCc
Confidence 33 33479999999854221 1359999999999644
No 78
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=5.7e-11 Score=102.16 Aligned_cols=78 Identities=26% Similarity=0.342 Sum_probs=66.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.++++|||+|||+|.++..+++++++|+|+|+++.+++.+++|+... ++++++++|+.++...
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~----------- 74 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLP----------- 74 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCcc-----------
Confidence 357789999999999999999999889999999999999999998532 2799999999876432
Q ss_pred cCCCCCCCCcccEEEECChhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~ 260 (324)
...||.|++|||+.
T Consensus 75 -------~~~~d~vi~n~Py~ 88 (169)
T smart00650 75 -------KLQPYKVVGNLPYN 88 (169)
T ss_pred -------ccCCCEEEECCCcc
Confidence 12489999999995
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.17 E-value=6.6e-11 Score=105.76 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=66.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++|++.++ +. +++++++|+.+....
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g--~~-~v~~~~~d~~~~~~~-------- 143 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG--LD-NVIVIVGDGTQGWEP-------- 143 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC--CC-CeEEEECCcccCCcc--------
Confidence 5688999999999999999999853 369999999999999999999999 85 899999998764322
Q ss_pred hcccCCCCCCCCcccEEEECChh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~ 259 (324)
...||.|+++++.
T Consensus 144 ----------~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 144 ----------LAPYDRIYVTAAG 156 (215)
T ss_pred ----------cCCCCEEEEcCCc
Confidence 1349999998754
No 80
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.17 E-value=1e-10 Score=110.25 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEe-ccHHHHHHHHHHHhhhhh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQ-KDARDFLQTDARAHLVRW 237 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~-~D~~~~~~~~~~~~~~~~ 237 (324)
++.++||+|||+|.++..++.+ +++++|+|+++.|++.|++|++.| + +.+++++.. .|..++......
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~------ 185 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIH------ 185 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccc------
Confidence 4579999999999988777763 679999999999999999999999 8 887888864 455444332111
Q ss_pred cccCCCCCCCCcccEEEECChhhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
....||.|++|||+.+
T Consensus 186 --------~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 186 --------KNERFDATLCNPPFHA 201 (321)
T ss_pred --------cCCceEEEEeCCCCcC
Confidence 0246999999999963
No 81
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.17 E-value=6.1e-10 Score=100.17 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=81.3
Q ss_pred HHHHHhh--ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898 153 HERVTKE--VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227 (324)
Q Consensus 153 ~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~ 227 (324)
+..+++. +.++++|||+|||+|.++..+++. +++|+|+|+|+.+++.+++|+..++ ++ +++++++|+.++..
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG--LH-NVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC--CC-ceEEEEechhcCCC
Confidence 3344444 457889999999999999999874 3599999999999999999998887 75 79999999876421
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
. ...||.|+++..-. ...++..+.. |++ ||.+.+..+...
T Consensus 111 ~------------------~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~--------gG~l~~~~~~~~ 155 (231)
T TIGR02752 111 D------------------DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP--------GGKVVCLETSQP 155 (231)
T ss_pred C------------------CCCccEEEEecccccCCCHHHHHHHHHHHcCc--------CeEEEEEECCCC
Confidence 1 13599999864321 2334444433 554 588877665543
No 82
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.16 E-value=3.7e-10 Score=103.12 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=75.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
+.++.+|||+|||+|..++.+++ .+++|+|+|+|+.|++.|++|+..++ ...+++++++|+.+...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~~~-------- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDIAI-------- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhCCC--------
Confidence 46888999999999999988876 35799999999999999999999887 76689999999876421
Q ss_pred hhcccCCCCCCCCcccEEEECChh------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898 236 RWSQSEGNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~ 289 (324)
..+|.|+++..- ....+++.+.. |++ ||.+.+..
T Consensus 124 ------------~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lkp--------GG~l~l~e 164 (247)
T PRK15451 124 ------------ENASMVVLNFTLQFLEPSERQALLDKIYQGLNP--------GGALVLSE 164 (247)
T ss_pred ------------CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCC--------CCEEEEEE
Confidence 238999987432 12234555544 554 47776654
No 83
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.14 E-value=3.4e-10 Score=111.31 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=66.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+|++|||+|||+|+.++.+++. +++|+|+|+++.+++.+++|++.++ +...+.+..+|+....... .
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g--~~~~v~~~~~d~~~~~~~~-~------ 306 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLG--LTIKAETKDGDGRGPSQWA-E------ 306 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccccc-c------
Confidence 457899999999999999999984 3699999999999999999999998 7633455777765432100 0
Q ss_pred cccCCCCCCCCcccEEEECChhhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...||.|++|+|.++
T Consensus 307 ---------~~~fD~VllDaPcSg 321 (426)
T TIGR00563 307 ---------NEQFDRILLDAPCSA 321 (426)
T ss_pred ---------ccccCEEEEcCCCCC
Confidence 135999999999865
No 84
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.3e-11 Score=110.13 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=71.4
Q ss_pred hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHHHHHhhhh
Q psy16898 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTDARAHLVR 236 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~~~~~~~~ 236 (324)
+.+++|+.|||.|||||+|.+.+...|++|+|+|++..|++-|+.|++..+ ++ ...++.+ ||......
T Consensus 193 a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~--i~-~~~~~~~~Da~~lpl~-------- 261 (347)
T COG1041 193 ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYG--IE-DYPVLKVLDATNLPLR-------- 261 (347)
T ss_pred hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhC--cC-ceeEEEecccccCCCC--------
Confidence 357799999999999999999999999999999999999999999999998 87 5666666 98876521
Q ss_pred hcccCCCCCCCCcccEEEECChhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
...+|.|+.|||+.
T Consensus 262 ----------~~~vdaIatDPPYG 275 (347)
T COG1041 262 ----------DNSVDAIATDPPYG 275 (347)
T ss_pred ----------CCccceEEecCCCC
Confidence 13599999999995
No 85
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.13 E-value=9.4e-11 Score=103.69 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=81.9
Q ss_pred EEeCCeEEEEeccceeecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHH
Q psy16898 129 HKENGCTFKMDFSKVYWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 129 ~~e~g~~f~id~~~~f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~ 205 (324)
+..+|+++.=.... ||-..+ .+-++. .++|++|||.|.|-|++|+.++++|+ +|+.+|.+|..++.|+-|-=
T Consensus 104 iEIdGIrMhrt~~t---dP~~Dt--~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPw 178 (287)
T COG2521 104 IEIDGIRMHRTKGT---DPLEDT--LAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPW 178 (287)
T ss_pred EEEccEEEecccCc---CcHHHH--HhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCC
Confidence 45689887632211 222111 112232 45799999999999999999999999 99999999999999877653
Q ss_pred HhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 206 LNERQVK-TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 206 ~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
..+ +. ..++++.||+.++++.... ..||.||-|||+++.
T Consensus 179 Sr~--l~~~~i~iilGD~~e~V~~~~D----------------~sfDaIiHDPPRfS~ 218 (287)
T COG2521 179 SRE--LFEIAIKIILGDAYEVVKDFDD----------------ESFDAIIHDPPRFSL 218 (287)
T ss_pred Ccc--ccccccEEecccHHHHHhcCCc----------------cccceEeeCCCccch
Confidence 333 32 3689999999999887532 459999999999764
No 86
>PLN02244 tocopherol O-methyltransferase
Probab=99.13 E-value=3.4e-10 Score=108.07 Aligned_cols=102 Identities=21% Similarity=0.167 Sum_probs=79.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.++.+|||+|||+|.++..++++ |++|+|+|+|+.+++.++++++.++ +.++++++.+|+.+....
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~~~~~----------- 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALNQPFE----------- 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCcccCCCC-----------
Confidence 46789999999999999999986 7899999999999999999999888 876899999998764221
Q ss_pred cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||.|++. .|. ...++..+.. |++ ||.+.+.++.
T Consensus 184 -------~~~FD~V~s~~~~~h~~d-~~~~l~e~~rvLkp--------GG~lvi~~~~ 225 (340)
T PLN02244 184 -------DGQFDLVWSMESGEHMPD-KRKFVQELARVAAP--------GGRIIIVTWC 225 (340)
T ss_pred -------CCCccEEEECCchhccCC-HHHHHHHHHHHcCC--------CcEEEEEEec
Confidence 1359999885 232 2345555544 665 4877766554
No 87
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.8e-10 Score=101.55 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=89.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++|+|.|.|+|.++..+|+ .. .+|+..|+.++.++.|++|++..+ +.+++++..+|+.+.....
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~~~------- 162 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGIDEE------- 162 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEecccccccccc-------
Confidence 67999999999999999999997 22 499999999999999999999988 8877999999998866542
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
.||+|++|+|+ ++++++.+.. |+++ |.+.||+=+-.
T Consensus 163 ------------~vDav~LDmp~-PW~~le~~~~~Lkpg--------g~~~~y~P~ve 199 (256)
T COG2519 163 ------------DVDAVFLDLPD-PWNVLEHVSDALKPG--------GVVVVYSPTVE 199 (256)
T ss_pred ------------ccCEEEEcCCC-hHHHHHHHHHHhCCC--------cEEEEEcCCHH
Confidence 39999999998 8899998877 7764 88888864433
No 88
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=2.5e-10 Score=101.34 Aligned_cols=80 Identities=16% Similarity=0.131 Sum_probs=67.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++++|||+|||+|.++..+++. +++|+++|+++.+++.|++|++.++ +.++++++++|+.+.+..
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~~-------- 139 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLEK-------- 139 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCcc--------
Confidence 457889999999999999988873 3599999999999999999999988 876799999998764332
Q ss_pred hcccCCCCCCCCcccEEEECChh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~ 259 (324)
...||.|+++-+.
T Consensus 140 ----------~~~fD~Ii~~~~~ 152 (205)
T PRK13944 140 ----------HAPFDAIIVTAAA 152 (205)
T ss_pred ----------CCCccEEEEccCc
Confidence 1349999998653
No 89
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=1.8e-10 Score=122.74 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=82.5
Q ss_pred eCCeEEEEeccceeecCcChHHHHH-HHhhcc----CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHH
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHER-VTKEVR----EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQAS 203 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~-~~~~~~----~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N 203 (324)
-.|+.|.++++- +.||-.+|... .+.... ++.+|||+|||+|.+++.++++. ++|+|+|+|+.|++.|++|
T Consensus 84 F~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 84 RKKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ecCCceeeCCCc--ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 478888888763 45665555432 122211 34689999999999999999853 5999999999999999999
Q ss_pred HHHhCCCCC---------------CCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 204 IRLNERQVK---------------TPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 204 ~~~n~~~l~---------------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
++.|+ ++ ++++++++|..+..... ...||.||.|||+..
T Consensus 162 a~~n~--l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~-----------------~~~fDlIVSNPPYI~ 215 (1082)
T PLN02672 162 LYLNA--LDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDN-----------------NIELDRIVGCIPQIL 215 (1082)
T ss_pred HHHcC--cccccccccccccccccccEEEEECchhhhcccc-----------------CCceEEEEECCCcCC
Confidence 99985 42 47999999998754221 124999999999853
No 90
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=2.1e-09 Score=97.40 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred HHhhccCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 156 VTKEVREGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 156 ~~~~~~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
++....++++|||+|||+|.-++.+++ . +.+|+++|+++++++.|++|++.++ +.++++++.+|+.+.+.....+
T Consensus 62 ~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~~L~~l~~~ 139 (234)
T PLN02781 62 MLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALSALDQLLNN 139 (234)
T ss_pred HHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHHHHHHHHhC
Confidence 344456788999999999998887776 2 3599999999999999999999999 8888999999999988765321
Q ss_pred hhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
. ....||.|++|.+... ..+++.+.. +++ ||++.+.
T Consensus 140 ~------------~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~--------GG~ii~d 177 (234)
T PLN02781 140 D------------PKPEFDFAFVDADKPNYVHFHEQLLKLVKV--------GGIIAFD 177 (234)
T ss_pred C------------CCCCCCEEEECCCHHHHHHHHHHHHHhcCC--------CeEEEEE
Confidence 0 0135999999975421 245555444 554 4776653
No 91
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.10 E-value=2.2e-10 Score=105.28 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=65.2
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.++++|||+|||+|.++..+++++.+|+|+|+++.+++.+++++... ++++++++|+.++..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~~~~~------------ 89 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDALKVDL------------ 89 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccccCCc------------
Confidence 457899999999999999999999889999999999999999887532 279999999986421
Q ss_pred cCCCCCCCCcccEEEECChhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..||.|++|||+.
T Consensus 90 --------~~~d~Vv~NlPy~ 102 (258)
T PRK14896 90 --------PEFNKVVSNLPYQ 102 (258)
T ss_pred --------hhceEEEEcCCcc
Confidence 1289999999995
No 92
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.10 E-value=1.4e-09 Score=97.17 Aligned_cols=134 Identities=16% Similarity=0.061 Sum_probs=83.7
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-C-------CC-CCCCeEEEeccHHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN-E-------RQ-VKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n-~-------~~-l~~~v~~~~~D~~~~~~~~~~ 231 (324)
.++.+|||+|||.|..++.+|++|..|+|+|+|+.|++.+....... . +. -..+++++++|+.++....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-- 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD-- 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc--
Confidence 57789999999999999999999999999999999999864322110 0 00 0125889999998753211
Q ss_pred HhhhhhcccCCCCCCCCcccEEE-----ECC-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC--------h
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVI-----MNL-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD--------L 296 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi-----~np-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~--------~ 296 (324)
...||.|+ +-+ |..-..++..+.. |++ ||.+++.+|..... -
T Consensus 111 ---------------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp--------gG~~ll~~~~~~~~~~~gpp~~~ 167 (213)
T TIGR03840 111 ---------------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP--------GARQLLITLDYDQSEMAGPPFSV 167 (213)
T ss_pred ---------------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC--------CCeEEEEEEEcCCCCCCCcCCCC
Confidence 01255443 233 3333456777766 565 48777777654211 1
Q ss_pred hHHhHhhhcCCCceEEEEeeccc
Q psy16898 297 ETKKKIKSYDPSYATLIRGIRRL 319 (324)
Q Consensus 297 ~~~~~v~~y~~~~~~~i~~~~~~ 319 (324)
...+..+.+.+...+...+....
T Consensus 168 ~~~eL~~~f~~~~~i~~~~~~~~ 190 (213)
T TIGR03840 168 SPAEVEALYGGHYEIELLESRDV 190 (213)
T ss_pred CHHHHHHHhcCCceEEEEeeccc
Confidence 22333445666666655554443
No 93
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=6e-10 Score=104.83 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=91.1
Q ss_pred eeecCcChHHHHHHH---hhcc-C-CCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCe
Q psy16898 143 VYWNSRLSTEHERVT---KEVR-E-GDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPI 215 (324)
Q Consensus 143 ~f~~~r~~~e~~~~~---~~~~-~-g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v 215 (324)
+|+||+++.-|...+ +.+. . ..+|+|.+||||.=|+.+|. .+. +|+.+|+||.|++.+++|++.|. .. +.
T Consensus 28 VFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~--~~-~~ 104 (380)
T COG1867 28 VFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS--GE-DA 104 (380)
T ss_pred ceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC--cc-cc
Confidence 899999876665422 2222 1 67999999999999999998 455 89999999999999999999995 44 57
Q ss_pred EEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898 216 SATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 216 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~ 274 (324)
..++.|+..++.+.. ..||+|=+||=.++..|++++.. .+.+
T Consensus 105 ~v~n~DAN~lm~~~~-----------------~~fd~IDiDPFGSPaPFlDaA~~s~~~~ 147 (380)
T COG1867 105 EVINKDANALLHELH-----------------RAFDVIDIDPFGSPAPFLDAALRSVRRG 147 (380)
T ss_pred eeecchHHHHHHhcC-----------------CCccEEecCCCCCCchHHHHHHHHhhcC
Confidence 888899999888742 34999999998888899999977 5543
No 94
>KOG1540|consensus
Probab=99.09 E-value=7.8e-10 Score=99.15 Aligned_cols=118 Identities=20% Similarity=0.196 Sum_probs=94.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--------CCEEEEEeCCHHHHHHHHHHHHHhCCCCCC--CeEEEeccHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--------GAIVAANDLNPDSYAWLQASIRLNERQVKT--PISATQKDARDFLQTDA 230 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--------g~~V~avD~~~~a~~~a~~N~~~n~~~l~~--~v~~~~~D~~~~~~~~~ 230 (324)
.++.++||++||||.++..+.+. ..+|+.+|+||+|++.+++.++..+ +.. .+.++++||.++..+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~--l~~~~~~~w~~~dAE~LpFdd- 175 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP--LKASSRVEWVEGDAEDLPFDD- 175 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcC--CCcCCceEEEeCCcccCCCCC-
Confidence 36789999999999999999873 2589999999999999999998766 654 4899999999876432
Q ss_pred HHhhhhhcccCCCCCCCCcccEEEE-----CChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898 231 RAHLVRWSQSEGNSTGGTAVARVIM-----NLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY 305 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~fD~Vi~-----npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y 305 (324)
..||..+| |-|......-++++-||++ |.+.|-.|++.+.+........|
T Consensus 176 -----------------~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG--------Grf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 176 -----------------DSFDAYTIAFGIRNVTHIQKALREAYRVLKPG--------GRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred -----------------CcceeEEEecceecCCCHHHHHHHHHHhcCCC--------cEEEEEEccccccHHHHHHHHhh
Confidence 34898877 6666555677777777765 99999999999876666665554
Q ss_pred C
Q psy16898 306 D 306 (324)
Q Consensus 306 ~ 306 (324)
.
T Consensus 231 s 231 (296)
T KOG1540|consen 231 S 231 (296)
T ss_pred h
Confidence 4
No 95
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=2.1e-10 Score=103.00 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchhHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR-----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~-----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
.+.+|||+|||+|.+++.++++ ..+|+|+|+++.|++.|++|.. ++.++++|+.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------~~~~~~~D~~~~~~--------- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------EATWINADALTTEF--------- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------CCEEEEcchhcccc---------
Confidence 4679999999999999999873 3499999999999999997742 36788999875321
Q ss_pred hcccCCCCCCCCcccEEEECChhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..+||+||+|||+.
T Consensus 112 ----------~~~FDlIIsNPPY~ 125 (241)
T PHA03412 112 ----------DTLFDMAISNPPFG 125 (241)
T ss_pred ----------cCCccEEEECCCCC
Confidence 13599999999996
No 96
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.07 E-value=5.6e-10 Score=101.56 Aligned_cols=118 Identities=15% Similarity=0.216 Sum_probs=84.1
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH-HHHHHHHHhh
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD-FLQTDARAHL 234 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~-~~~~~~~~~~ 234 (324)
.+.+|.+||+.|.|+|.++..+++. ..+|+..|.+++.++.|++|++.++ +.+++++.+.|+.+ ...+..
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~---- 110 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEEL---- 110 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-----
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccc----
Confidence 3679999999999999999999983 3499999999999999999999999 98899999999863 221111
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-c-chhhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-L-TREEFGKLSRPPVLYLYCFLPKMDLETKKKIK 303 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l-~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~ 303 (324)
...+|.|++|+|. +++.++.+.. | +++ |.+.||+=+-..-....+.++
T Consensus 111 ------------~~~~DavfLDlp~-Pw~~i~~~~~~L~~~g--------G~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 111 ------------ESDFDAVFLDLPD-PWEAIPHAKRALKKPG--------GRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp ------------TTSEEEEEEESSS-GGGGHHHHHHHE-EEE--------EEEEEEESSHHHHHHHHHHHH
T ss_pred ------------cCcccEEEEeCCC-HHHHHHHHHHHHhcCC--------ceEEEECCCHHHHHHHHHHHH
Confidence 1349999999998 6777777766 7 554 777777544333333333333
No 97
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.06 E-value=1.4e-09 Score=95.18 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
++.++||+|||.|.-|+.+|++|..|+|+|.|+.+++.+++-++..+ ++ ++....|..++..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~--l~--i~~~~~Dl~~~~~-------------- 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG--LD--IRTRVADLNDFDF-------------- 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT---T--EEEEE-BGCCBS---------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC--ce--eEEEEecchhccc--------------
Confidence 56699999999999999999999999999999999999999998888 86 9999999765422
Q ss_pred CCCCCCCcccEEEEC-----C-hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 242 GNSTGGTAVARVIMN-----L-PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~n-----p-P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|++. + |......++.+.. ++++ |++.+.+|..
T Consensus 92 -----~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pG--------G~~li~~~~~ 136 (192)
T PF03848_consen 92 -----PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPG--------GYNLIVTFME 136 (192)
T ss_dssp -----TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEE--------EEEEEEEEB-
T ss_pred -----cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCc--------EEEEEEEecc
Confidence 1349998752 2 3334456677765 5654 7666555543
No 98
>KOG2904|consensus
Probab=99.06 E-value=6.1e-10 Score=100.68 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=73.5
Q ss_pred ecCcChHHHH--HHHhhc-----cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCe
Q psy16898 145 WNSRLSTEHE--RVTKEV-----REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPI 215 (324)
Q Consensus 145 ~~~r~~~e~~--~~~~~~-----~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v 215 (324)
+-||..+|-. .+++.+ .++..+||+|||+|.+|+.++. ..+.|+|+|.|+.|+..|.+|+++++ +.+++
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i 201 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK--LSGRI 201 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh--hcCce
Confidence 3466666643 233332 2566899999999999999988 34699999999999999999999999 98888
Q ss_pred EEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 216 SATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 216 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
.+++-+...-...... ....+.|.+++|||+-
T Consensus 202 ~v~~~~me~d~~~~~~-------------l~~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHP-------------LLEGKIDLLVSNPPYI 233 (328)
T ss_pred EEEecccccccccccc-------------cccCceeEEecCCCcc
Confidence 8886543321100000 0124599999999995
No 99
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.06 E-value=1.6e-09 Score=99.82 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=78.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHH--hCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRL--NERQVKTPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~--n~~~l~~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
+.++.+|||+|||+|.++..++++ + ++|+|+|+|++|++.|+++... .+ ...+++++++|+.++...
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~--~~~~i~~~~~d~~~lp~~------ 142 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS--CYKNIEWIEGDATDLPFD------ 142 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhc--cCCCeEEEEcccccCCCC------
Confidence 457889999999999999999874 3 4999999999999999887642 22 223799999998765321
Q ss_pred hhhcccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD 295 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~ 295 (324)
...||.|+++ .|. ...++..+.. |++ ||.+.+..|.+.+.
T Consensus 143 ------------~~sfD~V~~~~~l~~~~d-~~~~l~ei~rvLkp--------GG~l~i~d~~~~~~ 188 (261)
T PLN02233 143 ------------DCYFDAITMGYGLRNVVD-RLKAMQEMYRVLKP--------GSRVSILDFNKSTQ 188 (261)
T ss_pred ------------CCCEeEEEEecccccCCC-HHHHHHHHHHHcCc--------CcEEEEEECCCCCc
Confidence 1359999884 343 2345555544 665 48888888876543
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=1.5e-09 Score=104.46 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+..+||+|||+|.+++.+|++ ...++|+|+++.+++.|.+++..++ +. |+.++++|+..++....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g--L~-NV~~i~~DA~~ll~~~~--------- 189 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN--LK-NLLIINYDARLLLELLP--------- 189 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEECCHHHhhhhCC---------
Confidence 4669999999999999999985 5699999999999999999999999 87 89999999987654321
Q ss_pred cCCCCCCCCcccEEEECChhh----------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT----------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~----------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
...+|.|+++.|.- ...|+..+.. |+++ |.+++-+-
T Consensus 190 -------~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpG--------G~l~l~TD 236 (390)
T PRK14121 190 -------SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPG--------GTLELRTD 236 (390)
T ss_pred -------CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCC--------cEEEEEEE
Confidence 24599999998752 1356666665 6654 77776443
No 101
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.05 E-value=2.1e-09 Score=96.37 Aligned_cols=92 Identities=21% Similarity=0.119 Sum_probs=66.9
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC--------------CCCeEEEeccHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV--------------KTPISATQKDARDFL 226 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l--------------~~~v~~~~~D~~~~~ 226 (324)
.++.+|||+|||.|.-++.+|++|+.|+|||+|+.|++.+.. .++ + ..++++.++|+.++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~--l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENG--LTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcC--CCccccccccccccccCceEEEECcccCCC
Confidence 467899999999999999999999999999999999998742 222 2 136889999998763
Q ss_pred HHHHHHhhhhhcccCCCCCCCCcccEEE-----EC-ChhhhHHHHHHHhc-cchh
Q psy16898 227 QTDARAHLVRWSQSEGNSTGGTAVARVI-----MN-LPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~fD~Vi-----~n-pP~~a~~~l~~~~~-l~~~ 274 (324)
... ...||.|+ +- ||..-..++..+.. |+++
T Consensus 111 ~~~-----------------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 111 AAD-----------------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred ccc-----------------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 321 12377666 33 34444567777766 6654
No 102
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.05 E-value=8.6e-10 Score=104.98 Aligned_cols=81 Identities=28% Similarity=0.310 Sum_probs=70.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC-----------------------------------------EEEEEeCCHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA-----------------------------------------IVAANDLNPDSYA 198 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~-----------------------------------------~V~avD~~~~a~~ 198 (324)
-.++..++|.+||+|+|.+.+|..+. .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34678999999999999999998653 2779999999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 199 WLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 199 ~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
.|+.|++.-| +.+.|+|..+|+.++.... ..+|+||+|||+.
T Consensus 269 ~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~------------------~~~gvvI~NPPYG 310 (381)
T COG0116 269 GAKANARAAG--VGDLIEFKQADATDLKEPL------------------EEYGVVISNPPYG 310 (381)
T ss_pred HHHHHHHhcC--CCceEEEEEcchhhCCCCC------------------CcCCEEEeCCCcc
Confidence 9999999999 9889999999999865432 2499999999995
No 103
>PLN02476 O-methyltransferase
Probab=99.05 E-value=5.7e-09 Score=96.43 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=86.3
Q ss_pred HHHhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898 155 RVTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
.++....+.++|||+|+|+|..++.+|+. +.+|+++|.++++++.|++|++.+| +.++++++.+|+.+.+.+...
T Consensus 111 ~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~GdA~e~L~~l~~ 188 (278)
T PLN02476 111 AMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGLAAESLKSMIQ 188 (278)
T ss_pred HHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCHHHHHHHHHh
Confidence 34445567889999999999999999982 4589999999999999999999999 988999999999999876532
Q ss_pred HhhhhhcccCCCCCCCCcccEEEECChhhh-HHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA-VEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
+. ....||.|++|.+... ..+++.+.. +++ ||++.+.
T Consensus 189 ~~------------~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~--------GGvIV~D 227 (278)
T PLN02476 189 NG------------EGSSYDFAFVDADKRMYQDYFELLLQLVRV--------GGVIVMD 227 (278)
T ss_pred cc------------cCCCCCEEEECCCHHHHHHHHHHHHHhcCC--------CcEEEEe
Confidence 10 0135999999998742 345555444 444 5766654
No 104
>KOG3420|consensus
Probab=99.04 E-value=2.1e-10 Score=94.40 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
+|++++|||||+|.+++.++-.+. .|+|+|++|+|++.+.+|+.... +. +.++++|..+....
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vq--idlLqcdildle~~------------ 111 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQ--IDLLQCDILDLELK------------ 111 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hh--hheeeeeccchhcc------------
Confidence 789999999999999988887666 99999999999999999999877 64 78999998875443
Q ss_pred CCCCCCCCcccEEEECChhhhH------HHHHHHhc
Q psy16898 241 EGNSTGGTAVARVIMNLPATAV------EYVRYLKV 270 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a~------~~l~~~~~ 270 (324)
+..||.+|+|||.... +|+++...
T Consensus 112 ------~g~fDtaviNppFGTk~~~aDm~fv~~al~ 141 (185)
T KOG3420|consen 112 ------GGIFDTAVINPPFGTKKKGADMEFVSAALK 141 (185)
T ss_pred ------CCeEeeEEecCCCCcccccccHHHHHHHHH
Confidence 3569999999998642 56666654
No 105
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=2.1e-09 Score=96.90 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=71.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+|.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.+.++++... |+.++.+|+.+...... +
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~-----nv~~i~~D~~~~~~~~~---l--- 138 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK-----NIIPILADARKPERYAH---V--- 138 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC-----CcEEEECCCCCcchhhh---c---
Confidence 4589999999999999999999853 489999999999999888876432 68899999864210000 0
Q ss_pred cccCCCCCCCCcccEEEECChhh--hHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPAT--AVEYVRYLKV-LTREEFGKLSRPPVLYL 287 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~--a~~~l~~~~~-l~~~~~~~~~~~g~vh~ 287 (324)
...||+|++|.+.. ...++..+.. |+++ |.+.+
T Consensus 139 ---------~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG--------G~lvI 174 (226)
T PRK04266 139 ---------VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDG--------GYLLL 174 (226)
T ss_pred ---------cccCCEEEECCCChhHHHHHHHHHHHhcCCC--------cEEEE
Confidence 12499999987642 2234555544 6654 77665
No 106
>PHA03411 putative methyltransferase; Provisional
Probab=99.04 E-value=7.2e-10 Score=101.75 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=68.0
Q ss_pred ceeecCcChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe
Q psy16898 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219 (324)
Q Consensus 142 ~~f~~~r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~ 219 (324)
..|+.|+..... ++.....+.+|||+|||+|.+++.++++ +.+|+++|+|+.|++.+++|. + ++++++
T Consensus 46 G~FfTP~~i~~~--f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~-~v~~v~ 115 (279)
T PHA03411 46 GAFFTPEGLAWD--FTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------P-EAEWIT 115 (279)
T ss_pred eeEcCCHHHHHH--HHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------c-CCEEEE
Confidence 456666633322 1222334679999999999999999875 469999999999999998763 1 478999
Q ss_pred ccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 220 KDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 220 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+|++++... .+||.||+|||...
T Consensus 116 ~D~~e~~~~-------------------~kFDlIIsNPPF~~ 138 (279)
T PHA03411 116 SDVFEFESN-------------------EKFDVVISNPPFGK 138 (279)
T ss_pred Cchhhhccc-------------------CCCcEEEEcCCccc
Confidence 999876421 34999999999963
No 107
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.03 E-value=3.1e-09 Score=96.30 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=76.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
+.++.+|||+|||+|.++..++++ +++|+|+|+|+.|++.|+++++..+ ...+++++++|+.++..
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~~~-------- 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHVEI-------- 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhCCC--------
Confidence 457889999999999999999873 5799999999999999999998765 44579999999986532
Q ss_pred hhcccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 236 RWSQSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
..+|.|+++.. .....+++.+.. |++ ||.+.+......
T Consensus 121 ------------~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp--------gG~l~i~d~~~~ 165 (239)
T TIGR00740 121 ------------KNASMVILNFTLQFLPPEDRIALLTKIYEGLNP--------NGVLVLSEKFRF 165 (239)
T ss_pred ------------CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCC--------CeEEEEeecccC
Confidence 12788877532 122345555544 555 477776654433
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.03 E-value=5.1e-09 Score=96.48 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=81.4
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.++.+|||+|||.|.++..+++. +.+|+++|++|.+++.|+++...++ ..++++++.+|+.+++...
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~--~~~rv~v~~~Da~~~l~~~--------- 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE--NGERFEVIEADGAEYIAVH--------- 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC--CCCceEEEECCHHHHHHhC---------
Confidence 45679999999999999988874 5699999999999999999987665 4458999999999987642
Q ss_pred ccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|++|.... ..+|+..... |++ +|++.+..+..
T Consensus 134 --------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~p--------gGvlvin~~~~ 180 (262)
T PRK04457 134 --------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSS--------DGIFVVNLWSR 180 (262)
T ss_pred --------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCC--------CcEEEEEcCCC
Confidence 13599999985321 2467777666 665 48877755544
No 109
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.02 E-value=5.7e-10 Score=103.35 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=67.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.++++|||+|||+|.++..+++++.+|+|+|+++.+++.+++|+.. ++++++++|+.++....
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~------~~v~~i~~D~~~~~~~~---------- 103 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE------DNLTIIEGDALKVDLSE---------- 103 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc------CceEEEEChhhcCCHHH----------
Confidence 45788999999999999999999888999999999999999887642 26999999998753221
Q ss_pred cCCCCCCCCcccEEEECChhhh-HHHHHHHh
Q psy16898 240 SEGNSTGGTAVARVIMNLPATA-VEYVRYLK 269 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a-~~~l~~~~ 269 (324)
..++.||.|||+.. ..++..+.
T Consensus 104 --------~~~~~vv~NlPY~iss~ii~~~l 126 (272)
T PRK00274 104 --------LQPLKVVANLPYNITTPLLFHLL 126 (272)
T ss_pred --------cCcceEEEeCCccchHHHHHHHH
Confidence 01589999999853 33444443
No 110
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.02 E-value=3.1e-09 Score=95.00 Aligned_cols=63 Identities=29% Similarity=0.340 Sum_probs=57.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.++..|++++..++ ..+++.+.++|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC
Confidence 468899999999999999999988899999999999999999998877 655799999998764
No 111
>KOG1270|consensus
Probab=99.02 E-value=5.7e-10 Score=100.52 Aligned_cols=85 Identities=25% Similarity=0.309 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-----CeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKT-----PISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-----~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
|.+|||+|||+|-++.++|+.|+.|+|+|+++.|++.|++..+.+- ..+ ++++.+.|+.+..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP--~~~~~~~y~l~~~~~~~E~~~----------- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDP--VLEGAIAYRLEYEDTDVEGLT----------- 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCc--hhccccceeeehhhcchhhcc-----------
Confidence 5789999999999999999999999999999999999999976654 322 3566666766532
Q ss_pred cccCCCCCCCCcccEEEE--------CChhhhHHHHHHHhc-cchh
Q psy16898 238 SQSEGNSTGGTAVARVIM--------NLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~--------npP~~a~~~l~~~~~-l~~~ 274 (324)
..||.|++ ||+ +|++++.. ++|+
T Consensus 157 ----------~~fDaVvcsevleHV~dp~----~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 157 ----------GKFDAVVCSEVLEHVKDPQ----EFLNCLSALLKPN 188 (282)
T ss_pred ----------cccceeeeHHHHHHHhCHH----HHHHHHHHHhCCC
Confidence 23999988 344 37777766 6665
No 112
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=1e-09 Score=97.91 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++|||+|||+|.++..+++. +++|+++|+++++++.+++|++.++ +. +++++++|+......
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g--~~-~v~~~~gd~~~~~~~-------- 142 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG--YD-NVEVIVGDGTLGYEE-------- 142 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-CeEEEECCcccCCCc--------
Confidence 568999999999999999988874 2599999999999999999999988 75 899999998754321
Q ss_pred hcccCCCCCCCCcccEEEECC
Q psy16898 237 WSQSEGNSTGGTAVARVIMNL 257 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~np 257 (324)
...||.|+++-
T Consensus 143 ----------~~~fD~I~~~~ 153 (212)
T PRK13942 143 ----------NAPYDRIYVTA 153 (212)
T ss_pred ----------CCCcCEEEECC
Confidence 13499999863
No 113
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.00 E-value=2.8e-09 Score=98.26 Aligned_cols=119 Identities=14% Similarity=0.063 Sum_probs=81.0
Q ss_pred eecCcChHHHHHHHhh--ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec
Q psy16898 144 YWNSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220 (324)
Q Consensus 144 f~~~r~~~e~~~~~~~--~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~ 220 (324)
|+.+.-......+++. +.++.+|||+|||+|..+..+++ .+++|+|+|+++.+++.|++++... +++.+.++
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~i~~~~~ 106 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK-----NKIEFEAN 106 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC-----CceEEEEC
Confidence 3444322233345554 46889999999999999999987 4679999999999999999876532 26899999
Q ss_pred cHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC-----h-hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 221 DARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL-----P-ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 221 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np-----P-~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
|+.+.... ...||+|++.. | .....++..+.. |++ ||.+.+..+...
T Consensus 107 D~~~~~~~------------------~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP--------GG~lvi~d~~~~ 160 (263)
T PTZ00098 107 DILKKDFP------------------ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP--------NGILLITDYCAD 160 (263)
T ss_pred CcccCCCC------------------CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC--------CcEEEEEEeccc
Confidence 98642111 13599999842 2 123345555544 555 488776665443
No 114
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.98 E-value=2.6e-09 Score=95.05 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=75.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++|++.++ +. ++++..+|+.+....
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~--~~-~v~~~~~d~~~~~~~----------- 141 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG--LH-NVSVRHGDGWKGWPA----------- 141 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC--CC-ceEEEECCcccCCCc-----------
Confidence 4578899999999999999888876799999999999999999999988 86 699999997543211
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
...||.|+++.+.. .+.+.+.. |+ ++|.+.+...
T Consensus 142 -------~~~fD~I~~~~~~~--~~~~~l~~~L~--------~gG~lv~~~~ 176 (212)
T PRK00312 142 -------YAPFDRILVTAAAP--EIPRALLEQLK--------EGGILVAPVG 176 (212)
T ss_pred -------CCCcCEEEEccCch--hhhHHHHHhcC--------CCcEEEEEEc
Confidence 13499999986542 22333333 44 4577766543
No 115
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.97 E-value=1.1e-08 Score=101.38 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=70.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--C-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--G-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+|++|||+|||.|+-+.++|.. + ..|+|+|+++.-++.+++|+++.| +. ++.+.+.|+..+....
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G--~~-nv~v~~~D~~~~~~~~------- 180 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCG--VS-NVALTHFDGRVFGAAL------- 180 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CC-eEEEEeCchhhhhhhc-------
Confidence 468999999999999999999983 2 489999999999999999999999 87 7999999998754322
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...||.|++|+|.++
T Consensus 181 ----------~~~fD~ILvDaPCSG 195 (470)
T PRK11933 181 ----------PETFDAILLDAPCSG 195 (470)
T ss_pred ----------hhhcCeEEEcCCCCC
Confidence 124999999999863
No 116
>KOG2730|consensus
Probab=98.96 E-value=1.7e-09 Score=94.99 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
..++|+|.|||.|+-++..|.+++.|+++|++|.-+.+|++|++..| ++++|+|++||..+....+..+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYG--I~~rItFI~GD~ld~~~~lq~~--------- 162 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYG--VPDRITFICGDFLDLASKLKAD--------- 162 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeec--CCceeEEEechHHHHHHHHhhh---------
Confidence 56789999999999999999999999999999999999999999999 9999999999999988776543
Q ss_pred CCCCCCCcccEEEECChhhhHH
Q psy16898 242 GNSTGGTAVARVIMNLPATAVE 263 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~a~~ 263 (324)
...+|.|.+-||-+..+
T Consensus 163 -----K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 163 -----KIKYDCVFLSPPWGGPS 179 (263)
T ss_pred -----hheeeeeecCCCCCCcc
Confidence 12366777766654433
No 117
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.96 E-value=2.4e-09 Score=111.31 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=68.7
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--------------------------------------------CCEEEEEeCCHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--------------------------------------------GAIVAANDLNPDS 196 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--------------------------------------------g~~V~avD~~~~a 196 (324)
.++..++|.|||+|+|.+++|.. ..+++|+|+++.|
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 56789999999999999999862 1269999999999
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 197 YAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 197 ~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
++.|++|+..++ +.+.+++.++|+.++..... ...||.||+|||+.
T Consensus 269 v~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~----------------~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAG--VAELITFEVKDVADLKNPLP----------------KGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcC--CCcceEEEeCChhhcccccc----------------cCCCCEEEECCCCc
Confidence 999999999999 98789999999988643211 13499999999994
No 118
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.96 E-value=4.3e-09 Score=82.46 Aligned_cols=86 Identities=22% Similarity=0.253 Sum_probs=64.4
Q ss_pred EEEEcCCCchhHHHHHhcC-----CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 166 VLDVFAGVGPFSIPAARRG-----AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 166 VLDl~~G~G~~al~~a~~g-----~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
|||+|||+|..+..+++.. .+++++|+|+.|++.++++.+..+ . +++++++|+.++...
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~--~--~~~~~~~D~~~l~~~------------ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG--P--KVRFVQADARDLPFS------------ 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT--T--TSEEEESCTTCHHHH------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC--C--ceEEEECCHhHCccc------------
Confidence 7999999999999999863 799999999999999999998877 5 599999999885422
Q ss_pred CCCCCCCCcccEEEE-CC--hhh----hHHHHHHHhc-cch
Q psy16898 241 EGNSTGGTAVARVIM-NL--PAT----AVEYVRYLKV-LTR 273 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~-np--P~~----a~~~l~~~~~-l~~ 273 (324)
..+||+|++ .. ... ...+++.+.. +++
T Consensus 65 ------~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 65 ------DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRP 99 (101)
T ss_dssp ------SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEE
T ss_pred ------CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCC
Confidence 246999999 33 222 3345665555 554
No 119
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.94 E-value=8.4e-09 Score=95.26 Aligned_cols=103 Identities=22% Similarity=0.225 Sum_probs=76.2
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
.+.+|++|||+|||+|..++.+++. + .+|+++|+++.+++.|++|...++ +. +++++.+|+.++...
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g--~~-~v~~~~~d~~~l~~~------- 143 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG--YT-NVEFRLGEIEALPVA------- 143 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC--CC-CEEEEEcchhhCCCC-------
Confidence 3668999999999999998877763 3 389999999999999999999888 76 899999998653211
Q ss_pred hhcccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 236 RWSQSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||.|++|. |. ....+..+.. |++ ||.+.+..+.
T Consensus 144 -----------~~~fD~Vi~~~v~~~~~d-~~~~l~~~~r~Lkp--------GG~l~i~~~~ 185 (272)
T PRK11873 144 -----------DNSVDVIISNCVINLSPD-KERVFKEAFRVLKP--------GGRFAISDVV 185 (272)
T ss_pred -----------CCceeEEEEcCcccCCCC-HHHHHHHHHHHcCC--------CcEEEEEEee
Confidence 13599999873 33 2234444433 665 4887776543
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.93 E-value=1.8e-08 Score=93.86 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=78.5
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCCC--CCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQV--KTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~l--~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
...++||++|||.|.++..+++. +. +|++||+++.+++.|++++...+... +.+++++.+|+++++...
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------- 147 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET------- 147 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-------
Confidence 45679999999999999999885 44 99999999999999999886421002 247999999999987651
Q ss_pred hcccCCCCCCCCcccEEEECChh--h------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA--T------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~--~------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
..+||+|++|++. . ..+|+..++. |++ +|++.+..-++
T Consensus 148 ----------~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~--------gGvlv~~~~~~ 194 (283)
T PRK00811 148 ----------ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKE--------DGIFVAQSGSP 194 (283)
T ss_pred ----------CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCC--------CcEEEEeCCCc
Confidence 2459999999532 1 2355555554 554 47777654433
No 121
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.93 E-value=7.6e-09 Score=94.39 Aligned_cols=109 Identities=19% Similarity=0.064 Sum_probs=76.7
Q ss_pred HHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898 156 VTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 156 ~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~ 233 (324)
+++.+. ++.+|||+|||+|.++..+++.|++|+++|+|+.+++.++++.. ...++++|+.++...
T Consensus 34 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~--------~~~~~~~d~~~~~~~----- 100 (251)
T PRK10258 34 LLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA--------ADHYLAGDIESLPLA----- 100 (251)
T ss_pred HHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC--------CCCEEEcCcccCcCC-----
Confidence 344443 46799999999999999999989999999999999999887532 245778888654211
Q ss_pred hhhhcccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhH
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLET 298 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~ 298 (324)
...||.|+++.+-. ...++..+.. ++ ++|.+.+.+|....-.+.
T Consensus 101 -------------~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk--------~gG~l~~~~~~~~~~~el 149 (251)
T PRK10258 101 -------------TATFDLAWSNLAVQWCGNLSTALRELYRVVR--------PGGVVAFTTLVQGSLPEL 149 (251)
T ss_pred -------------CCcEEEEEECchhhhcCCHHHHHHHHHHHcC--------CCeEEEEEeCCCCchHHH
Confidence 13599999986532 1234444433 44 458888888877554433
No 122
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.92 E-value=2.8e-08 Score=88.18 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=85.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+.++||++|||+|.-++.+|+. +++|+++|.+++..+.|++|++..+ +.++++++.+|+.+++.....+.
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda~~~l~~l~~~~--- 117 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDALEVLPELANDG--- 117 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-HHHHHHHHHHTT---
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEeccHhhHHHHHhcc---
Confidence 446779999999999999999983 6799999999999999999999999 88899999999999998865421
Q ss_pred hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
....||.|++|-... -..+++.+.. ++++ |+|.+.
T Consensus 118 ---------~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g--------gvii~D 154 (205)
T PF01596_consen 118 ---------EEGQFDFVFIDADKRNYLEYFEKALPLLRPG--------GVIIAD 154 (205)
T ss_dssp ---------TTTSEEEEEEESTGGGHHHHHHHHHHHEEEE--------EEEEEE
T ss_pred ---------CCCceeEEEEcccccchhhHHHHHhhhccCC--------eEEEEc
Confidence 013599999997664 3456666655 6654 777766
No 123
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.90 E-value=1.6e-08 Score=90.15 Aligned_cols=111 Identities=22% Similarity=0.206 Sum_probs=74.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH--HHHHHHhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL--QTDARAHL 234 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~--~~~~~~~~ 234 (324)
+.+|.+|||+|||+|.++..++++. ..|+|+|+++ .+. +. +++++++|+.+.. .+.... +
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~--~~-~v~~i~~D~~~~~~~~~i~~~-~ 113 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDP--IV-GVDFLQGDFRDELVLKALLER-V 113 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccC--CC-CcEEEecCCCChHHHHHHHHH-h
Confidence 5788999999999999999998852 4899999998 134 54 5899999988742 221111 0
Q ss_pred hhhcccCCCCCCCCcccEEEECC-hhhh--------------HHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHH
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNL-PATA--------------VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETK 299 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~np-P~~a--------------~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~ 299 (324)
....||+|++|+ |... ...+..+.. .+++||.+.+..|......+..
T Consensus 114 -----------~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~-------~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 114 -----------GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRD-------VLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred -----------CCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHH-------HcCCCCEEEEEEecCcCHHHHH
Confidence 024599999987 3210 112222222 3446799999888887666555
Q ss_pred hHhh
Q psy16898 300 KKIK 303 (324)
Q Consensus 300 ~~v~ 303 (324)
...+
T Consensus 176 ~~l~ 179 (209)
T PRK11188 176 REIR 179 (209)
T ss_pred HHHH
Confidence 5543
No 124
>PRK10742 putative methyltransferase; Provisional
Probab=98.89 E-value=1.1e-08 Score=92.42 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=70.8
Q ss_pred ccCCC--EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh------CCCCCCCeEEEeccHHHHHHHHHH
Q psy16898 160 VREGD--LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN------ERQVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 160 ~~~g~--~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n------~~~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
+++|. +|||+++|+|..|+.+|.+|++|+++|.||.+...+++|++.- +..+..+++++++|+.+++...
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-- 161 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-- 161 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC--
Confidence 45777 9999999999999999999999999999999999999999873 2001137999999999998753
Q ss_pred HhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
...||+|.+|||+-
T Consensus 162 ---------------~~~fDVVYlDPMfp 175 (250)
T PRK10742 162 ---------------TPRPQVVYLDPMFP 175 (250)
T ss_pred ---------------CCCCcEEEECCCCC
Confidence 13499999999983
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.88 E-value=9.3e-09 Score=97.26 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=64.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++++|||+|||+|.+++.+++.. ..|+++|+++.+++.|++|++.++ ++ ++.++++|+.+.....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g--~~-nV~~i~gD~~~~~~~~------- 147 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG--IE-NVIFVCGDGYYGVPEF------- 147 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC--CC-cEEEEeCChhhccccc-------
Confidence 5688999999999999999999842 379999999999999999999998 86 7999999987654321
Q ss_pred hcccCCCCCCCCcccEEEECC
Q psy16898 237 WSQSEGNSTGGTAVARVIMNL 257 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~np 257 (324)
..||.|+++.
T Consensus 148 -----------~~fD~Ii~~~ 157 (322)
T PRK13943 148 -----------APYDVIFVTV 157 (322)
T ss_pred -----------CCccEEEECC
Confidence 2499999963
No 126
>PTZ00146 fibrillarin; Provisional
Probab=98.87 E-value=2.4e-08 Score=92.64 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=74.7
Q ss_pred ecCcChHHHHHHHh-----hccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE
Q psy16898 145 WNSRLSTEHERVTK-----EVREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216 (324)
Q Consensus 145 ~~~r~~~e~~~~~~-----~~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~ 216 (324)
|||.-+.--..++. .++++.+|||+|||+|+++.++|+.. ..|+|+|+++.+.+.+.+-++.. .|+.
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-----~NI~ 184 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-----PNIV 184 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-----CCCE
Confidence 77764432222322 25689999999999999999999852 48999999998887666554421 2688
Q ss_pred EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV-LTREEFGKLSRPPVLYL 287 (324)
Q Consensus 217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~-l~~~~~~~~~~~g~vh~ 287 (324)
++.+|+..-.. ... + ...||+|++|... .+..++..+.. |+++ |.+.+
T Consensus 185 ~I~~Da~~p~~-y~~--~------------~~~vDvV~~Dva~pdq~~il~~na~r~LKpG--------G~~vI 235 (293)
T PTZ00146 185 PIIEDARYPQK-YRM--L------------VPMVDVIFADVAQPDQARIVALNAQYFLKNG--------GHFII 235 (293)
T ss_pred EEECCccChhh-hhc--c------------cCCCCEEEEeCCCcchHHHHHHHHHHhccCC--------CEEEE
Confidence 99999864211 000 0 1249999998642 22334444443 6654 77665
No 127
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.85 E-value=1.9e-08 Score=97.14 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=82.8
Q ss_pred cceeecCcChHHHHHHH------hhc----cCCCEEEEEcCCCchhHHHHHhc--CC-EEEEEeCCHHHHHHHHHHHHHh
Q psy16898 141 SKVYWNSRLSTEHERVT------KEV----REGDLVLDVFAGVGPFSIPAARR--GA-IVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 141 ~~~f~~~r~~~e~~~~~------~~~----~~g~~VLDl~~G~G~~al~~a~~--g~-~V~avD~~~~a~~~a~~N~~~n 207 (324)
..+|+||.+...|...+ +.. ..+-++||..||+|.-|+..++. +. +|+++|+|++|++.+++|++.|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 34899999776665421 111 13448999999999999999985 44 9999999999999999999999
Q ss_pred CCCCCC-CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898 208 ERQVKT-PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 208 ~~~l~~-~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~ 274 (324)
+ +++ ++++.++||..++... ...||+|=+||=.++..|++++.. .+.+
T Consensus 98 ~--~~~~~~~v~~~DAn~ll~~~-----------------~~~fD~IDlDPfGSp~pfldsA~~~v~~g 147 (377)
T PF02005_consen 98 G--LEDERIEVSNMDANVLLYSR-----------------QERFDVIDLDPFGSPAPFLDSALQAVKDG 147 (377)
T ss_dssp T---SGCCEEEEES-HHHHHCHS-----------------TT-EEEEEE--SS--HHHHHHHHHHEEEE
T ss_pred c--ccCceEEEehhhHHHHhhhc-----------------cccCCEEEeCCCCCccHhHHHHHHHhhcC
Confidence 9 886 6999999999988521 245999999998888899999977 6654
No 128
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.85 E-value=2.3e-08 Score=94.42 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC----CCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV----KTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l----~~~v~~~~~D~~~ 224 (324)
++.+|||+|||+|.+++.++++|++|+|+|+|+.|++.+++|++... . ..++++..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~--~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEAL--AALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcc--cccccccceEEEEcchhh
Confidence 57899999999999999999999999999999999999999987642 1 1257888888754
No 129
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.84 E-value=1e-08 Score=93.89 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=69.5
Q ss_pred HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
++++. +.++++|||+|||+|.++..+++++..|+++|+++.+++.+++++... .+++++++|+.++...
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~-----~~v~v~~~D~~~~~~~---- 90 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY-----ERLEVIEGDALKVDLP---- 90 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC-----CcEEEEECchhcCChh----
Confidence 34443 457889999999999999999999889999999999999999877432 2799999999875432
Q ss_pred hhhhhcccCCCCCCCCccc---EEEECChhh-hHHHHHHHh
Q psy16898 233 HLVRWSQSEGNSTGGTAVA---RVIMNLPAT-AVEYVRYLK 269 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD---~Vi~npP~~-a~~~l~~~~ 269 (324)
.+| .|+.|+|+. +..++..+.
T Consensus 91 ----------------~~d~~~~vvsNlPy~i~~~il~~ll 115 (253)
T TIGR00755 91 ----------------DFPKQLKVVSNLPYNISSPLIFKLL 115 (253)
T ss_pred ----------------HcCCcceEEEcCChhhHHHHHHHHh
Confidence 144 999999984 333444443
No 130
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.84 E-value=2.4e-08 Score=96.88 Aligned_cols=99 Identities=19% Similarity=0.244 Sum_probs=72.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
+.+|.+|||+|||+|.+++.+++. |++|+|+|+|+.+++.|++++. + + .+++..+|..+. .
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~--l--~v~~~~~D~~~l-----~------- 226 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--G--L--PVEIRLQDYRDL-----N------- 226 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--c--C--eEEEEECchhhc-----C-------
Confidence 468899999999999999999984 7899999999999999999884 4 4 378888887653 0
Q ss_pred ccCCCCCCCCcccEEEECCh------hhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 239 QSEGNSTGGTAVARVIMNLP------ATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP------~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
..||.|++... .....++..+.. |++ +|.+.+.++...
T Consensus 227 ---------~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp--------GG~lvl~~i~~~ 271 (383)
T PRK11705 227 ---------GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKP--------DGLFLLHTIGSN 271 (383)
T ss_pred ---------CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCC--------CcEEEEEEccCC
Confidence 24999987532 111245555544 555 477766665443
No 131
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.83 E-value=1.6e-08 Score=92.68 Aligned_cols=92 Identities=22% Similarity=0.248 Sum_probs=66.8
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.++.+|||+|||+|.++..++++ +++|+|+|+|+.|++.|++ ++ ++++++|+.++..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----~~------~~~~~~d~~~~~~----------- 86 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----RG------VDARTGDVRDWKP----------- 86 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----cC------CcEEEcChhhCCC-----------
Confidence 47889999999999999999986 6799999999999999864 23 5688899876521
Q ss_pred ccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~ 289 (324)
...||.|+++..-. ...++..+.. |++ ||.+.+..
T Consensus 87 --------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp--------gG~l~~~~ 126 (255)
T PRK14103 87 --------KPDTDVVVSNAALQWVPEHADLLVRWVDELAP--------GSWIAVQV 126 (255)
T ss_pred --------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCC--------CcEEEEEc
Confidence 13499999975321 2334444433 555 47766543
No 132
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.83 E-value=3.7e-08 Score=88.30 Aligned_cols=60 Identities=33% Similarity=0.392 Sum_probs=54.4
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA 222 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~ 222 (324)
.++.+|||+|||+|.++..+++.+..|+++|+|+.+++.|+++....+ +.+++.+..+|.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~ 121 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAG--LAGNITFEVGDL 121 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCc
Confidence 467899999999999999999988899999999999999999998877 655799999993
No 133
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.81 E-value=1e-08 Score=78.12 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=61.2
Q ss_pred EEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCC
Q psy16898 167 LDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNST 245 (324)
Q Consensus 167 LDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 245 (324)
||+|||+|.++..++++ +.+|+++|+++.+++.++++....+ +.+.++|+.++...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~------~~~~~~d~~~l~~~----------------- 57 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG------VSFRQGDAEDLPFP----------------- 57 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST------EEEEESBTTSSSS------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC------chheeehHHhCccc-----------------
Confidence 89999999999999998 7799999999999999999776444 56999998876332
Q ss_pred CCCcccEEEECChh----hhHHHHHHHhc-cchh
Q psy16898 246 GGTAVARVIMNLPA----TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 246 ~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~ 274 (324)
...||+|+++--- ....++..+.. +|++
T Consensus 58 -~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 58 -DNSFDVVFSNSVLHHLEDPEAALREIYRVLKPG 90 (95)
T ss_dssp -TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEE
T ss_pred -cccccccccccceeeccCHHHHHHHHHHHcCcC
Confidence 2459999886211 12345555554 7775
No 134
>PRK03612 spermidine synthase; Provisional
Probab=98.80 E-value=4.3e-08 Score=98.73 Aligned_cols=107 Identities=23% Similarity=0.267 Sum_probs=78.5
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHH---hCCCCC-CCeEEEeccHHHHHHHHHHHhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRL---NERQVK-TPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~---n~~~l~-~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
++.++|||+|||+|..+..+++.+ .+|+++|+++++++.+++|... |+..++ .+++++++|+++++...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-----
Confidence 467899999999999999998864 5999999999999999996432 210022 37999999999987642
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhh---------HHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATA---------VEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a---------~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
..+||+|++|+|... .+|.+.++. |++ +|.+.+...++
T Consensus 371 ------------~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p--------gG~lv~~~~~~ 418 (521)
T PRK03612 371 ------------AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP--------DGLLVVQSTSP 418 (521)
T ss_pred ------------CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCC--------CeEEEEecCCc
Confidence 135999999987531 246666555 555 47776654433
No 135
>PRK06922 hypothetical protein; Provisional
Probab=98.80 E-value=7.2e-08 Score=97.78 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=62.8
Q ss_pred cCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.++.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.|++++..++ . ++.++++|+.++.... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~--~ie~I~gDa~dLp~~f-e------- 484 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--R--SWNVIKGDAINLSSSF-E------- 484 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--C--CeEEEEcchHhCcccc-C-------
Confidence 3688999999999999988887 35699999999999999999887655 3 5889999988743211 1
Q ss_pred ccCCCCCCCCcccEEEECChh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~ 259 (324)
...||.|+++++.
T Consensus 485 --------deSFDvVVsn~vL 497 (677)
T PRK06922 485 --------KESVDTIVYSSIL 497 (677)
T ss_pred --------CCCEEEEEEchHH
Confidence 2359999998643
No 136
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.78 E-value=5.8e-08 Score=96.75 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=74.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
+.++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|+.. ...++++.++|+.+....
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~~~~---------- 329 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKKTYP---------- 329 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccCCCC----------
Confidence 357889999999999999999884 77999999999999999998863 334799999998753211
Q ss_pred ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||+|++. .|. ...++..+.. |++ ||.+.+..+..
T Consensus 330 --------~~~fD~I~s~~~l~h~~d-~~~~l~~~~r~Lkp--------gG~l~i~~~~~ 372 (475)
T PLN02336 330 --------DNSFDVIYSRDTILHIQD-KPALFRSFFKWLKP--------GGKVLISDYCR 372 (475)
T ss_pred --------CCCEEEEEECCcccccCC-HHHHHHHHHHHcCC--------CeEEEEEEecc
Confidence 1359999985 122 2345555554 665 47777665554
No 137
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.78 E-value=2.9e-08 Score=88.85 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=74.0
Q ss_pred CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 164 DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
++|||+|||+|.++..+++. +++|+|+|+|+.+++.+++++...+ +.++++++.+|+.+...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~~~-------------- 64 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKDPF-------------- 64 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccCCC--------------
Confidence 37999999999999999985 4699999999999999999999888 87789999999754311
Q ss_pred CCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 242 GNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
...||+|++. .+. ...++..+.. |++ +|.+.+..+.
T Consensus 65 -----~~~fD~I~~~~~l~~~~~-~~~~l~~~~~~Lkp--------gG~l~i~~~~ 106 (224)
T smart00828 65 -----PDTYDLVFGFEVIHHIKD-KMDLFSNISRHLKD--------GGHLVLADFI 106 (224)
T ss_pred -----CCCCCEeehHHHHHhCCC-HHHHHHHHHHHcCC--------CCEEEEEEcc
Confidence 1249999863 122 2346666655 665 4777766543
No 138
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.78 E-value=6.2e-08 Score=86.92 Aligned_cols=103 Identities=22% Similarity=0.233 Sum_probs=76.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++..++ +..++.++.+|+.+....
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~--------- 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEALPFP--------- 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccCCCC---------
Confidence 367899999999999999999865 699999999999999999998776 655799999998764311
Q ss_pred cccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 238 SQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|+++ .+. ...++..+.. +++ +|.+.+..+..
T Consensus 119 ---------~~~~D~I~~~~~l~~~~~-~~~~l~~~~~~L~~--------gG~li~~~~~~ 161 (239)
T PRK00216 119 ---------DNSFDAVTIAFGLRNVPD-IDKALREMYRVLKP--------GGRLVILEFSK 161 (239)
T ss_pred ---------CCCccEEEEecccccCCC-HHHHHHHHHHhccC--------CcEEEEEEecC
Confidence 1359999874 222 2345555555 554 47766555443
No 139
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.78 E-value=3.4e-08 Score=90.43 Aligned_cols=95 Identities=18% Similarity=0.162 Sum_probs=68.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|+++. + ++.++.+|+.++..
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~-~~~~~~~d~~~~~~---------- 90 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------P-DCQFVEADIASWQP---------- 90 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------C-CCeEEECchhccCC----------
Confidence 357889999999999999999985 579999999999999998653 2 47889999876432
Q ss_pred cccCCCCCCCCcccEEEECChhh----hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPAT----AVEYVRYLKV-LTREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~----a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~ 289 (324)
...||.|+++..-. ...++..+.. |++ ||.+.+.+
T Consensus 91 ---------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp--------gG~~~~~~ 130 (258)
T PRK01683 91 ---------PQALDLIFANASLQWLPDHLELFPRLVSLLAP--------GGVLAVQM 130 (258)
T ss_pred ---------CCCccEEEEccChhhCCCHHHHHHHHHHhcCC--------CcEEEEEC
Confidence 13499999985421 2234444433 454 57776643
No 140
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.7e-08 Score=92.82 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=71.9
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
...+|++|||+|++.|+-+.++|.. |..|+|+|.++.-++.+++|+++-| +. ++..++.|+..+......
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG--~~-nv~~~~~d~~~~~~~~~~--- 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG--VR-NVIVVNKDARRLAELLPG--- 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcC--CC-ceEEEecccccccccccc---
Confidence 3568999999999999999999983 4578999999999999999999999 87 689999998876544221
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
...||.|++|+|.++.
T Consensus 227 ------------~~~fD~iLlDaPCSg~ 242 (355)
T COG0144 227 ------------GEKFDRILLDAPCSGT 242 (355)
T ss_pred ------------cCcCcEEEECCCCCCC
Confidence 1249999999999754
No 141
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.77 E-value=2.7e-08 Score=88.58 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=62.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+++|++|||+|||+|+++..+|.. | .+|+++|.++..++.|++|+...+ +. ++.++++|+.......
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~--~~-nv~~~~gdg~~g~~~~------- 139 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG--ID-NVEVVVGDGSEGWPEE------- 139 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT--TH-SEEEEES-GGGTTGGG-------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc--cC-ceeEEEcchhhccccC-------
Confidence 679999999999999999999983 3 379999999999999999999998 76 8999999987654432
Q ss_pred hcccCCCCCCCCcccEEEECCh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLP 258 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP 258 (324)
..||.|+++..
T Consensus 140 -----------apfD~I~v~~a 150 (209)
T PF01135_consen 140 -----------APFDRIIVTAA 150 (209)
T ss_dssp ------------SEEEEEESSB
T ss_pred -----------CCcCEEEEeec
Confidence 23999999743
No 142
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.5e-08 Score=86.28 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=69.9
Q ss_pred HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
++++. +++|++||++|||+|+.+..+|+...+|+++|..+...+.|++|++..+ +. |+.+.++|........
T Consensus 63 ~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg--~~-nV~v~~gDG~~G~~~~--- 136 (209)
T COG2518 63 RMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG--YE-NVTVRHGDGSKGWPEE--- 136 (209)
T ss_pred HHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC--CC-ceEEEECCcccCCCCC---
Confidence 44443 6799999999999999999999987799999999999999999999999 87 6999999988754432
Q ss_pred hhhhhcccCCCCCCCCcccEEEEC
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMN 256 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~n 256 (324)
..||.|+..
T Consensus 137 ---------------aPyD~I~Vt 145 (209)
T COG2518 137 ---------------APYDRIIVT 145 (209)
T ss_pred ---------------CCcCEEEEe
Confidence 349999886
No 143
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.76 E-value=2e-08 Score=87.22 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=62.6
Q ss_pred HHHHhhccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 154 ERVTKEVREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 154 ~~~~~~~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
..+.+.+.+|.+|||||||.|.+...+.. +++.++|+|++++.+..+. .+| +.++++|+.+.+....
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG------v~Viq~Dld~gL~~f~-- 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG------VSVIQGDLDEGLADFP-- 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC------CCEEECCHHHhHhhCC--
Confidence 34677899999999999999999988887 7889999999999876653 345 5689999998766532
Q ss_pred hhhhhcccCCCCCCCCcccEEEEC
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMN 256 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~n 256 (324)
...||.|||+
T Consensus 73 --------------d~sFD~VIls 82 (193)
T PF07021_consen 73 --------------DQSFDYVILS 82 (193)
T ss_pred --------------CCCccEEehH
Confidence 2469999996
No 144
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.75 E-value=6.2e-08 Score=91.88 Aligned_cols=100 Identities=20% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
+|++|||+|||+|.++..++..|+ .|+|+|.|+.++..++...+..+ ...++.++.+|+.++..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp~------------- 186 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLPA------------- 186 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCCC-------------
Confidence 688999999999999999999876 79999999998876554433322 23379999999876532
Q ss_pred CCCCCCCCcccEEEECC-h-h--hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 241 EGNSTGGTAVARVIMNL-P-A--TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~np-P-~--~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
...||.|++.- - . ....++..+.. |++ ||.+.+.++
T Consensus 187 ------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lkp--------GG~lvl~~~ 227 (322)
T PRK15068 187 ------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVP--------GGELVLETL 227 (322)
T ss_pred ------cCCcCEEEECChhhccCCHHHHHHHHHHhcCC--------CcEEEEEEE
Confidence 13499998841 1 0 12345555544 555 476665543
No 145
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.75 E-value=1.1e-07 Score=84.90 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
.+.+|||+|||+|.++..+++.++.|+++|+++.+++.+++++..++ +. ++.+..+|+.++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~-~~~~~~~d~~~~~~~~------------ 109 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDP--LL-KIEYRCTSVEDLAEKG------------ 109 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC--CC-ceEEEeCCHHHhhcCC------------
Confidence 47899999999999999999988899999999999999999999887 64 5889999988765431
Q ss_pred CCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 242 GNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
...||.|+++-.- ....++..+.. +++ +|.+.+...
T Consensus 110 -----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~--------gG~l~i~~~ 150 (224)
T TIGR01983 110 -----AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKP--------GGILFFSTI 150 (224)
T ss_pred -----CCCccEEEehhHHHhCCCHHHHHHHHHHhcCC--------CcEEEEEec
Confidence 1359999886211 12345555554 444 476665543
No 146
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.75 E-value=5.7e-08 Score=73.90 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=65.7
Q ss_pred EEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 165 LVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
+++|+|||+|.++..+++ .+.+++++|+++.++..++++...+. .. +++++.+|+.+.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~-------------- 63 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL--AD-NVEVLKGDAEELPPEA-------------- 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc--cc-ceEEEEcChhhhcccc--------------
Confidence 489999999999999998 55699999999999999987555444 33 7999999998865410
Q ss_pred CCCCCcccEEEECChhhh-----HHHHHHHhc
Q psy16898 244 STGGTAVARVIMNLPATA-----VEYVRYLKV 270 (324)
Q Consensus 244 ~~~~~~fD~Vi~npP~~a-----~~~l~~~~~ 270 (324)
...+|.|++++|... ..++..+..
T Consensus 64 ---~~~~d~i~~~~~~~~~~~~~~~~l~~~~~ 92 (107)
T cd02440 64 ---DESFDVIISDPPLHHLVEDLARFLEEARR 92 (107)
T ss_pred ---CCceEEEEEccceeehhhHHHHHHHHHHH
Confidence 235999999998754 344544444
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=98.75 E-value=8.4e-08 Score=91.43 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=77.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH---HhCCCC-CCCeEEEeccHHHHHHHHHHHh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIR---LNERQV-KTPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~---~n~~~l-~~~v~~~~~D~~~~~~~~~~~~ 233 (324)
....++||++|||.|..+..+++.. .+|++||+++++++.|++.-. .|+..+ +.+++++.+|+.+++...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~---- 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP---- 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc----
Confidence 3456799999999999988888854 599999999999999996311 121002 248999999999988652
Q ss_pred hhhhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
...||+|++|+|.. ..+|+..++. |++ +|++.+-.-
T Consensus 224 -------------~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP--------gGV~V~Qs~ 269 (374)
T PRK01581 224 -------------SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTE--------DGAFVCQSN 269 (374)
T ss_pred -------------CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC--------CcEEEEecC
Confidence 23599999998652 1356666655 665 477766543
No 148
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3.1e-08 Score=90.34 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=68.8
Q ss_pred HHHh--hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 155 RVTK--EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 155 ~~~~--~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
++++ .+.+++.||++|+|.|.++..+++++++|+|+|+++..++.+++.... . ++++++++|+..+-.....
T Consensus 21 kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~----~-~n~~vi~~DaLk~d~~~l~- 94 (259)
T COG0030 21 KIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP----Y-DNLTVINGDALKFDFPSLA- 94 (259)
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc----c-cceEEEeCchhcCcchhhc-
Confidence 4544 356789999999999999999999999999999999999999887652 2 3899999999876433110
Q ss_pred hhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
.++.||.|+|+.
T Consensus 95 ----------------~~~~vVaNlPY~ 106 (259)
T COG0030 95 ----------------QPYKVVANLPYN 106 (259)
T ss_pred ----------------CCCEEEEcCCCc
Confidence 389999999995
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.74 E-value=8.9e-08 Score=84.43 Aligned_cols=99 Identities=22% Similarity=0.298 Sum_probs=77.5
Q ss_pred CEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 164 DLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
..+||+|||.|.+.+.+|+ ....++|+|+....+..+...+...+ ++ |+.++++|+..++.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~--l~-Nv~~~~~da~~~l~~~~~---------- 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG--LK-NVRFLRGDARELLRRLFP---------- 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT--TS-SEEEEES-CTTHHHHHST----------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc--cc-ceEEEEccHHHHHhhccc----------
Confidence 3899999999999999998 46799999999999999999999998 87 999999999998776533
Q ss_pred CCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 242 GNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
...+|.|.++-|+- ..+|++.+.. |+++ |.|++-
T Consensus 86 -----~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~g--------G~l~~~ 132 (195)
T PF02390_consen 86 -----PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPG--------GELYFA 132 (195)
T ss_dssp -----TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEE--------EEEEEE
T ss_pred -----CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCC--------CEEEEE
Confidence 24599999987761 2368888877 7775 777543
No 150
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.74 E-value=1.6e-07 Score=88.30 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=56.2
Q ss_pred HHhhccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH
Q psy16898 156 VTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL 226 (324)
Q Consensus 156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~ 226 (324)
+++.+.++.+|||+|||+|.++..+++. +.+|+++|+|++|++.+++++.... -.-++.++++|..+..
T Consensus 57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQLEVHGICADFTQPL 128 (301)
T ss_pred HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCceEEEEEEcccchh
Confidence 4455667889999999999999999986 5799999999999999999987532 1124788999987653
No 151
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.72 E-value=1.1e-07 Score=89.69 Aligned_cols=100 Identities=19% Similarity=0.106 Sum_probs=69.7
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+|++|||+|||+|.++..++..|+ .|+|+|.|+.++..++...+.-+ ...++.+..+++.++...
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp~~----------- 186 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLHEL----------- 186 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCCCC-----------
Confidence 4688999999999999999999887 89999999999887644333222 223688888887664321
Q ss_pred cCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 240 SEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
..||.|+++- +. ...++..+.. |+++ |.+.+.++
T Consensus 187 --------~~FD~V~s~gvL~H~~d-p~~~L~el~r~LkpG--------G~Lvletl 226 (314)
T TIGR00452 187 --------YAFDTVFSMGVLYHRKS-PLEHLKQLKHQLVIK--------GELVLETL 226 (314)
T ss_pred --------CCcCEEEEcchhhccCC-HHHHHHHHHHhcCCC--------CEEEEEEE
Confidence 2499998762 22 3345665555 6654 77665544
No 152
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.72 E-value=7e-08 Score=85.70 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=49.4
Q ss_pred HhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 157 TKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 157 ~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+..+.++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++.. ++.+.++|+.+
T Consensus 38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------~~~~~~~d~~~ 99 (204)
T TIGR03587 38 LNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------NINIIQGSLFD 99 (204)
T ss_pred HHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------CCcEEEeeccC
Confidence 344567889999999999999999885 5799999999999999987531 35677888765
No 153
>KOG3191|consensus
Probab=98.71 E-value=3.2e-07 Score=78.64 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=88.5
Q ss_pred CCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 163 GDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+.++++|||+|..+-.+++. ++...|.|+||.|++..++.++.|+ . ++..++.|....+..
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~--~~~~V~tdl~~~l~~----------- 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--V--HIDVVRTDLLSGLRN----------- 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--C--ccceeehhHHhhhcc-----------
Confidence 678999999999999999983 3578999999999999999999999 6 488999998887665
Q ss_pred cCCCCCCCCcccEEEECChhhhH-------HHHH-HHhc-cchhh-----c----CCCCCCCEEEEEEcccCCChhHHhH
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAV-------EYVR-YLKV-LTREE-----F----GKLSRPPVLYLYCFLPKMDLETKKK 301 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~-------~~l~-~~~~-l~~~~-----~----~~~~~~g~vh~y~f~~~~~~~~~~~ 301 (324)
.+.|+++.|||+-.. +.+. +..+ ..+.. + ..+++.|+++.-....+...+..+.
T Consensus 109 --------~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~ 180 (209)
T KOG3191|consen 109 --------ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKI 180 (209)
T ss_pred --------CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHH
Confidence 349999999999421 1111 1111 11110 1 1245678988888888877777776
Q ss_pred hhhc
Q psy16898 302 IKSY 305 (324)
Q Consensus 302 v~~y 305 (324)
++++
T Consensus 181 l~~~ 184 (209)
T KOG3191|consen 181 LEKK 184 (209)
T ss_pred Hhhc
Confidence 6554
No 154
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.70 E-value=2.1e-07 Score=80.51 Aligned_cols=123 Identities=27% Similarity=0.259 Sum_probs=73.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
..++.+||+||||+|..|+.+|+. +++|++-|.++ +++.++.|++.|+.....++++...|..+-......+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~----- 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLE----- 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-----
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccc-----
Confidence 457889999999999999999997 55999999999 9999999999986212346777777754422111110
Q ss_pred cccCCCCCCCCcccEEEE-CC---hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898 238 SQSEGNSTGGTAVARVIM-NL---PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS 304 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~-np---P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~ 304 (324)
...||+|+. |. +.....++..+.. +++. +.++.+|..+...+..+-+.+++
T Consensus 117 ---------~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~-------~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 117 ---------PHSFDVILASDVLYDEELFEPLVRTLKRLLKPN-------GKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp ----------SSBSEEEEES--S-GGGHHHHHHHHHHHBTT--------TTEEEEEE-S-TGGCHHHHHH--
T ss_pred ---------cccCCEEEEecccchHHHHHHHHHHHHHHhCCC-------CEEEEEeCEecHHHHHHHHHhhh
Confidence 235998876 43 3334557777766 5543 34677777776666666666543
No 155
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.69 E-value=2.2e-07 Score=86.01 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+++||++|||+|.++..+++.. .+|+++|+++.+++.+++++...+..+. .+++++.+|+++++...
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--------- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--------- 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC---------
Confidence 45699999999999999888864 4899999999999999998754320021 37899999999988653
Q ss_pred ccCCCCCCCCcccEEEECChhh--------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT--------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~--------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||+||+|++.. ..+|++.+.. |++ +|++.+...++
T Consensus 143 --------~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~p--------gG~lv~~~~~~ 189 (270)
T TIGR00417 143 --------ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNE--------DGIFVAQSESP 189 (270)
T ss_pred --------CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCC--------CcEEEEcCCCc
Confidence 13599999998731 2456666655 555 47777654333
No 156
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.69 E-value=1.1e-07 Score=89.45 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=76.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.++.+|||+|||+|.+++.++++ +.+++++|. |.+++.+++|+...+ +.++++++.+|+.+...
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~~---------- 213 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKESY---------- 213 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCCC----------
Confidence 457789999999999999999985 469999997 899999999999988 87789999999874211
Q ss_pred cccCCCCCCCCcccEEEE-C-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 238 SQSEGNSTGGTAVARVIM-N-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~-n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
..+|.|++ + .+.....++..+.. |++ ||.+.++.+..
T Consensus 214 ----------~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p--------gG~l~i~d~~~ 257 (306)
T TIGR02716 214 ----------PEADAVLFCRILYSANEQLSTIMCKKAFDAMRS--------GGRLLILDMVI 257 (306)
T ss_pred ----------CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC--------CCEEEEEEecc
Confidence 12687654 2 12223445555544 665 48888887644
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.69 E-value=1.9e-07 Score=83.98 Aligned_cols=136 Identities=9% Similarity=0.036 Sum_probs=90.5
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH-------hC-CC-CCCCeEEEeccHHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL-------NE-RQ-VKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~-------n~-~~-l~~~v~~~~~D~~~~~~~~~~ 231 (324)
.++.+||+.+||.|.-++.+|.+|.+|+|+|+|+.|++.+.+.... +. .. -..+++++++|++++.....
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~- 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN- 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc-
Confidence 3578999999999999999999999999999999999998652110 00 00 01368999999998632100
Q ss_pred HhhhhhcccCCCCCCCCcccEEEE------CChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC---h----h
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVIM------NLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD---L----E 297 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi~------npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~---~----~ 297 (324)
....||.|+- =||.....+.+.+.. +++ +|.+++.+|..... + .
T Consensus 121 --------------~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p--------gg~llll~~~~~~~~~GPPf~v~ 178 (226)
T PRK13256 121 --------------NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN--------NTQILLLVMEHDKKSQTPPYSVT 178 (226)
T ss_pred --------------ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC--------CcEEEEEEEecCCCCCCCCCcCC
Confidence 0124776532 266666677777776 555 47787777754321 1 2
Q ss_pred HHhHhhhcCCCceEEEEeeccc
Q psy16898 298 TKKKIKSYDPSYATLIRGIRRL 319 (324)
Q Consensus 298 ~~~~v~~y~~~~~~~i~~~~~~ 319 (324)
..+..+.|.+...+..+..+..
T Consensus 179 ~~e~~~lf~~~~~i~~l~~~~~ 200 (226)
T PRK13256 179 QAELIKNFSAKIKFELIDSKQR 200 (226)
T ss_pred HHHHHHhccCCceEEEeeeccc
Confidence 2344456888888777765543
No 158
>PLN02366 spermidine synthase
Probab=98.68 E-value=2.9e-07 Score=86.66 Aligned_cols=98 Identities=12% Similarity=0.070 Sum_probs=74.7
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
.+.++||++|||.|..+..+++. + .+|+.+|+++.+++.+++.....+..++ .+++++.+|+++++.+..
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~------- 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP------- 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc-------
Confidence 46789999999999999999985 3 4899999999999999998754210032 389999999999987531
Q ss_pred cccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~ 274 (324)
...||+|++|.+. ...+|++.+.. |+++
T Consensus 163 ---------~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 163 ---------EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred ---------CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 1359999999654 13467766665 6654
No 159
>PRK05785 hypothetical protein; Provisional
Probab=98.68 E-value=1.9e-07 Score=84.20 Aligned_cols=68 Identities=18% Similarity=0.119 Sum_probs=53.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.++.+|||+|||||.++..+++. +.+|+|+|+|++|++.|++. . .++++|+.++...
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~----~-------~~~~~d~~~lp~~----------- 107 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA----D-------DKVVGSFEALPFR----------- 107 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc----c-------ceEEechhhCCCC-----------
Confidence 46789999999999999999987 57999999999999998652 1 2356777654221
Q ss_pred cCCCCCCCCcccEEEECC
Q psy16898 240 SEGNSTGGTAVARVIMNL 257 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~np 257 (324)
..+||.|++..
T Consensus 108 -------d~sfD~v~~~~ 118 (226)
T PRK05785 108 -------DKSFDVVMSSF 118 (226)
T ss_pred -------CCCEEEEEecC
Confidence 24599999864
No 160
>KOG0820|consensus
Probab=98.67 E-value=3.7e-08 Score=89.22 Aligned_cols=105 Identities=20% Similarity=0.307 Sum_probs=82.7
Q ss_pred eCCeEEEEeccceeecCcChHHHHHHH--hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 131 ENGCTFKMDFSKVYWNSRLSTEHERVT--KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 131 e~g~~f~id~~~~f~~~r~~~e~~~~~--~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
..|..|..|+.+-+..+.... ..++ +.+++++.||++|.|||.++..+...|++|+|+|++|.++.-+.+..+...
T Consensus 27 ~~~~kfnkd~GQHilkNp~v~--~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp 104 (315)
T KOG0820|consen 27 SGGSKFNKDFGQHILKNPLVI--DQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP 104 (315)
T ss_pred ccCcccccccchhhhcCHHHH--HHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC
Confidence 467788888888665443221 1233 347799999999999999999999999999999999999999988776444
Q ss_pred CCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChh
Q psy16898 209 RQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 209 ~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~ 259 (324)
.+++.+++.+|+...- ...||.+|.|+|+
T Consensus 105 --~~~kLqV~~gD~lK~d--------------------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 105 --KSGKLQVLHGDFLKTD--------------------LPRFDGCVSNLPY 133 (315)
T ss_pred --ccceeeEEecccccCC--------------------CcccceeeccCCc
Confidence 4578999999976521 1349999999998
No 161
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.67 E-value=3e-07 Score=82.84 Aligned_cols=93 Identities=22% Similarity=0.132 Sum_probs=70.6
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++.+|||+|||+|.++..+++.+++|+++|+++.+++.+++|+..++ . ++.+..+|+.++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~~~~~----------- 111 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESG--L--KIDYRQTTAEELAAEH----------- 111 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcC--C--ceEEEecCHHHhhhhc-----------
Confidence 367899999999999999999998999999999999999999998777 5 4788888887765321
Q ss_pred CCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchh
Q psy16898 241 EGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~ 274 (324)
...||+|++...- ....++..+.. ++++
T Consensus 112 ------~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 112 ------PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred ------CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 2359999885221 12345555554 5543
No 162
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.64 E-value=2.9e-08 Score=93.41 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=59.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh---------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR---------RGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTD 229 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~---------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~ 229 (324)
..++.+|+|.+||+|.|.+.+.+ ....++|+|+++.++..++.|+..++ +.. +..+.++|...-....
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~--~~~~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG--IDNSNINIIQGDSLENDKFI 121 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT--HHCBGCEEEES-TTTSHSCT
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc--cccccccccccccccccccc
Confidence 44677999999999999998886 34599999999999999999998877 552 3468888865432211
Q ss_pred HHHhhhhhcccCCCCCCCCcccEEEECChhhhH
Q psy16898 230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
....||.|++|||....
T Consensus 122 ----------------~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 122 ----------------KNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp ----------------ST--EEEEEEE--CTCE
T ss_pred ----------------cccccccccCCCCcccc
Confidence 02459999999999654
No 163
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.64 E-value=3.8e-07 Score=79.67 Aligned_cols=111 Identities=22% Similarity=0.165 Sum_probs=69.3
Q ss_pred hhccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH--HHHHHH
Q psy16898 158 KEVREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL--QTDARA 232 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~--~~~~~~ 232 (324)
..+.+|++|||+|||+|.++..++++. ++|+++|+|+.+ + .. +++++++|+.+.. ......
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~--~~-~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------P--IE-NVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------c--CC-CceEEEeeCCChhHHHHHHHH
Confidence 346789999999999999999888742 379999999964 2 33 5788888876531 111110
Q ss_pred hhhhhcccCCCCCCCCcccEEEECCh-h-hh-------------HHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChh
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMNLP-A-TA-------------VEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLE 297 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~npP-~-~a-------------~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~ 297 (324)
. +...||.|++|++ . .. ..++..+.. .++++|.+.+.++....-.+
T Consensus 94 -~-----------~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~-------~LkpgG~lvi~~~~~~~~~~ 154 (188)
T TIGR00438 94 -V-----------GDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKE-------VLKPKGNFVVKVFQGEEIDE 154 (188)
T ss_pred -h-----------CCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHH-------HccCCCEEEEEEccCccHHH
Confidence 0 0235999999852 1 11 122333322 23456888887776654444
Q ss_pred HHhH
Q psy16898 298 TKKK 301 (324)
Q Consensus 298 ~~~~ 301 (324)
....
T Consensus 155 ~l~~ 158 (188)
T TIGR00438 155 YLNE 158 (188)
T ss_pred HHHH
Confidence 4443
No 164
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=1.3e-07 Score=94.33 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=63.7
Q ss_pred HHHHHHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHH
Q psy16898 152 EHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD 229 (324)
Q Consensus 152 e~~~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~ 229 (324)
++..+++.+. ++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++ .++ ...+++++++|+.+.....
T Consensus 25 ~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~--~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 25 ERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---ING--HYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred hhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhc--cCCceEEEEecccccccCC
Confidence 3344555543 56799999999999999999988899999999999987644 333 3347999999986421110
Q ss_pred HHHhhhhhcccCCCCCCCCcccEEEECChh
Q psy16898 230 ARAHLVRWSQSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~ 259 (324)
+...||.|+++.+-
T Consensus 100 ----------------~~~~fD~I~~~~~l 113 (475)
T PLN02336 100 ----------------SDGSVDLIFSNWLL 113 (475)
T ss_pred ----------------CCCCEEEEehhhhH
Confidence 02359999998654
No 165
>PLN03075 nicotianamine synthase; Provisional
Probab=98.63 E-value=1.9e-07 Score=86.94 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCchhH-HHHHh---cCCEEEEEeCCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 162 EGDLVLDVFAGVGPFS-IPAAR---RGAIVAANDLNPDSYAWLQASIRL-NERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~a-l~~a~---~g~~V~avD~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
++++|+|+|||.|+++ +.+++ .+.+++++|+++++++.|+++++. .+ +.++++|..+|+.+....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g--L~~rV~F~~~Da~~~~~~-------- 192 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD--LSKRMFFHTADVMDVTES-------- 192 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC--ccCCcEEEECchhhcccc--------
Confidence 6789999999988664 44443 356899999999999999999964 66 777899999999874322
Q ss_pred hcccCCCCCCCCcccEEEECC-----hhhhHHHHHHHhc-cchh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNL-----PATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~np-----P~~a~~~l~~~~~-l~~~ 274 (324)
...||+|+++- +......++.+.. ++++
T Consensus 193 ----------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 193 ----------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred ----------cCCcCEEEEecccccccccHHHHHHHHHHhcCCC
Confidence 13499999982 1223456666666 6665
No 166
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.61 E-value=7.5e-07 Score=79.50 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=87.2
Q ss_pred HHHhhccCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEe-ccHHHHHHHHH
Q psy16898 155 RVTKEVREGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ-KDARDFLQTDA 230 (324)
Q Consensus 155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~-~D~~~~~~~~~ 230 (324)
+++....+.++||++|+++|.-++.+|. . ..+++++|.+++..+.|++|.+.-+ +.++++++. +|+.+.+....
T Consensus 52 ~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gdal~~l~~~~ 129 (219)
T COG4122 52 RLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGDALDVLSRLL 129 (219)
T ss_pred HHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCcHHHHHHhcc
Confidence 3444556888999999999999999998 2 3599999999999999999999999 987899999 69999887621
Q ss_pred HHhhhhhcccCCCCCCCCcccEEEECChh-hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 231 RAHLVRWSQSEGNSTGGTAVARVIMNLPA-TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~-~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|++|--. .-..|++.+.. +++ ||++.++-...
T Consensus 130 ----------------~~~fDliFIDadK~~yp~~le~~~~lLr~--------GGliv~DNvl~ 169 (219)
T COG4122 130 ----------------DGSFDLVFIDADKADYPEYLERALPLLRP--------GGLIVADNVLF 169 (219)
T ss_pred ----------------CCCccEEEEeCChhhCHHHHHHHHHHhCC--------CcEEEEeeccc
Confidence 1459999998432 23457776665 555 58888775444
No 167
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.60 E-value=1.8e-07 Score=81.66 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=66.0
Q ss_pred CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
.++||+|||.|.|+..+|.++.+++++|+++.|++.|++.+. + .+ +|++..+|+.++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~--~~-~V~~~~~dvp~~~P~--------------- 104 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--G--LP-HVEWIQADVPEFWPE--------------- 104 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T---S-SEEEEES-TTT---S---------------
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--C--CC-CeEEEECcCCCCCCC---------------
Confidence 589999999999999999997799999999999999998876 3 44 799999999876432
Q ss_pred CCCCCcccEEEEC-------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEc
Q psy16898 244 STGGTAVARVIMN-------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCF 290 (324)
Q Consensus 244 ~~~~~~fD~Vi~n-------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f 290 (324)
..||.||+- +...-..+++.+.. |.++ |.+.+-.+
T Consensus 105 ----~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pg--------G~LV~g~~ 147 (201)
T PF05401_consen 105 ----GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPG--------GHLVFGHA 147 (201)
T ss_dssp ----S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEE--------EEEEEEEE
T ss_pred ----CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCC--------CEEEEEEe
Confidence 469999873 22222345555555 6665 66654444
No 168
>KOG1499|consensus
Probab=98.60 E-value=6.4e-08 Score=90.77 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=58.6
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+-++++|||+|||+|.+++.+|+.|+ +|+|||.|.-| +.|++.++.|+ +.+.++++.+.+.+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEE
Confidence 45899999999999999999999998 99999999877 99999999999 988899999999886
No 169
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.59 E-value=5.1e-07 Score=75.72 Aligned_cols=93 Identities=27% Similarity=0.309 Sum_probs=66.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++. .+ +.....+.......
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-------~~~~~~~~~~~~~~----------- 75 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-------VVFDNFDAQDPPFP----------- 75 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-------SEEEEEECHTHHCH-----------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-------hhhhhhhhhhhhcc-----------
Confidence 5678999999999999999999999999999999999988 11 12222222221111
Q ss_pred cCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 240 SEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|+++ .|. ...+++.+.. ++++ |++.+.....
T Consensus 76 -------~~~fD~i~~~~~l~~~~d-~~~~l~~l~~~Lkpg--------G~l~~~~~~~ 118 (161)
T PF13489_consen 76 -------DGSFDLIICNDVLEHLPD-PEEFLKELSRLLKPG--------GYLVISDPNR 118 (161)
T ss_dssp -------SSSEEEEEEESSGGGSSH-HHHHHHHHHHCEEEE--------EEEEEEEEBT
T ss_pred -------ccchhhHhhHHHHhhccc-HHHHHHHHHHhcCCC--------CEEEEEEcCC
Confidence 2469999986 443 4567777776 7765 8887776654
No 170
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.59 E-value=4.5e-07 Score=80.43 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=73.1
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
.++.+|||+|||+|.++..+++.+ ++++++|+++.+++.++++.. . . .++.++.+|+.+....
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~--~-~~i~~~~~d~~~~~~~--------- 103 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L--P-LNIEFIQADAEALPFE--------- 103 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c--C-CCceEEecchhcCCCC---------
Confidence 368899999999999999999854 389999999999999998876 2 2 2688999998764311
Q ss_pred cccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 238 SQSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||.|+++ .+. ...+++.+.. |++ +|.+.+..+..
T Consensus 104 ---------~~~~D~i~~~~~~~~~~~-~~~~l~~~~~~L~~--------gG~l~~~~~~~ 146 (223)
T TIGR01934 104 ---------DNSFDAVTIAFGLRNVTD-IQKALREMYRVLKP--------GGRLVILEFSK 146 (223)
T ss_pred ---------CCcEEEEEEeeeeCCccc-HHHHHHHHHHHcCC--------CcEEEEEEecC
Confidence 1349999874 232 3456666655 554 47777655543
No 171
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.58 E-value=1.5e-07 Score=92.92 Aligned_cols=91 Identities=27% Similarity=0.324 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchhHHHHHhcC-----C-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRG-----A-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g-----~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|+|+|||+|.++..+++.| + +|+|||.|+.|+..+++.++.|+ ..++|+++++|++++-..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp-------- 256 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP-------- 256 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS--------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC--------
Confidence 5789999999999998887754 3 99999999999999988888999 988999999999986432
Q ss_pred hcccCCCCCCCCcccEEEECChh------hhHHHHHHHhc-cchh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA------TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~------~a~~~l~~~~~-l~~~ 274 (324)
.++|+||+-+=. ...+.|++... |+++
T Consensus 257 -----------ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 257 -----------EKVDIIVSELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp -----------S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred -----------CceeEEEEeccCCccccccCHHHHHHHHhhcCCC
Confidence 359999996543 34567888877 7776
No 172
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.57 E-value=1.6e-06 Score=79.15 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=81.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+.++||++|+++|.-++.+|+. +.+|+++|.+++..+.|++|++..+ +.++|+++.+|+.+.+.+.....
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~a~e~L~~l~~~~--- 151 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGPALPVLDQMIEDG--- 151 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeccHHHHHHHHHhcc---
Confidence 345679999999999999999873 5699999999999999999999999 88899999999999988764310
Q ss_pred hcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
.....||.|++|--.. -..+++.+.. ++ +||+|.+.
T Consensus 152 --------~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~--------~GGviv~D 189 (247)
T PLN02589 152 --------KYHGTFDFIFVDADKDNYINYHKRLIDLVK--------VGGVIGYD 189 (247)
T ss_pred --------ccCCcccEEEecCCHHHhHHHHHHHHHhcC--------CCeEEEEc
Confidence 0013599999995432 2345554444 44 45666544
No 173
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.56 E-value=3.2e-07 Score=82.30 Aligned_cols=136 Identities=15% Similarity=0.053 Sum_probs=88.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHHhC-CC---C----CCCeEEEeccHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA-SIRLNE-RQ---V----KTPISATQKDARDFLQTDA 230 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~-N~~~n~-~~---l----~~~v~~~~~D~~~~~~~~~ 230 (324)
..++.+||+.|||.|.-.+.+|.+|.+|+|+|+|+.|++.+.+ |..... .. . .++|+++++|.+++.....
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 4577799999999999999999999999999999999999833 222110 00 1 1368999999998654322
Q ss_pred HHhhhhhcccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCE--EEEEEcccCCC--h---
Q psy16898 231 RAHLVRWSQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPV--LYLYCFLPKMD--L--- 296 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~--vh~y~f~~~~~--~--- 296 (324)
.+||.|.== ||.....+.+.+.. ++++ |. +.+..+..... +
T Consensus 115 -----------------g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~--------g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 115 -----------------GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG--------GRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp -----------------HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE--------EEEEEEEEES-CSCSSSSS--
T ss_pred -----------------CCceEEEEecccccCCHHHHHHHHHHHHHHhCCC--------CcEEEEEEEcCCcCCCCcCCC
Confidence 238877542 66667788888887 6765 55 33444433221 1
Q ss_pred -hHHhHhhhcCCCceEEEEeecccC
Q psy16898 297 -ETKKKIKSYDPSYATLIRGIRRLS 320 (324)
Q Consensus 297 -~~~~~v~~y~~~~~~~i~~~~~~~ 320 (324)
...+..+.|.++..++.++.....
T Consensus 170 v~~~ev~~l~~~~f~i~~l~~~~~~ 194 (218)
T PF05724_consen 170 VTEEEVRELFGPGFEIEELEEEDSI 194 (218)
T ss_dssp --HHHHHHHHTTTEEEEEEEEEE-T
T ss_pred CCHHHHHHHhcCCcEEEEEeccccc
Confidence 233444567888787777765443
No 174
>PRK08317 hypothetical protein; Provisional
Probab=98.55 E-value=7.8e-07 Score=79.48 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=70.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++.+|||+|||+|.++..+++. +++|+|+|+++.+++.++++.... ..++.+..+|+.+....
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~-------- 84 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP-------- 84 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC--------
Confidence 557889999999999999999884 359999999999999999984322 23789999998653211
Q ss_pred hcccCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~ 289 (324)
...||.|+++..- ....++..+.. |++ +|.+.+..
T Consensus 85 ----------~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~--------gG~l~~~~ 124 (241)
T PRK08317 85 ----------DGSFDAVRSDRVLQHLEDPARALAEIARVLRP--------GGRVVVLD 124 (241)
T ss_pred ----------CCCceEEEEechhhccCCHHHHHHHHHHHhcC--------CcEEEEEe
Confidence 1359999886321 12335555544 555 47665443
No 175
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.55 E-value=4.7e-08 Score=84.06 Aligned_cols=62 Identities=24% Similarity=0.232 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~ 227 (324)
.+++.|||+|+|.+|+.+|....+|+|+|.+|.-..+|++|++.+| +. |++++++|++++-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g--~~-n~evv~gDA~~y~f 94 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG--DV-NWEVVVGDARDYDF 94 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC--Cc-ceEEEecccccccc
Confidence 3689999999999999999986799999999999999999999998 75 89999999998643
No 176
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.54 E-value=3e-07 Score=87.51 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=58.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.++.+|||+|||+|.+++.+++. +.+|+++|.|+.+++.|+++...+ +++++.+|+.+....
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~------~i~~i~gD~e~lp~~---------- 175 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK------ECKIIEGDAEDLPFP---------- 175 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc------CCeEEeccHHhCCCC----------
Confidence 36789999999999999998874 469999999999999999886533 477899998764221
Q ss_pred ccCCCCCCCCcccEEEECC
Q psy16898 239 QSEGNSTGGTAVARVIMNL 257 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~np 257 (324)
...||+|+++.
T Consensus 176 --------~~sFDvVIs~~ 186 (340)
T PLN02490 176 --------TDYADRYVSAG 186 (340)
T ss_pred --------CCceeEEEEcC
Confidence 13599999863
No 177
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.53 E-value=1e-06 Score=82.11 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=70.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
..+|+.|||+||+.|+-+..+|.. ...|+|+|+++.-+..++.|+++.| +. ++...+.|+.........
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g--~~-~v~~~~~D~~~~~~~~~~----- 154 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG--VF-NVIVINADARKLDPKKPE----- 154 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---S-SEEEEESHHHHHHHHHHT-----
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC--Cc-eEEEEeeccccccccccc-----
Confidence 568999999999999999999983 2499999999999999999999999 87 788888999987654322
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
..||.|++|+|.++
T Consensus 155 -----------~~fd~VlvDaPCSg 168 (283)
T PF01189_consen 155 -----------SKFDRVLVDAPCSG 168 (283)
T ss_dssp -----------TTEEEEEEECSCCC
T ss_pred -----------cccchhhcCCCccc
Confidence 24999999999864
No 178
>PRK06202 hypothetical protein; Provisional
Probab=98.52 E-value=1.7e-07 Score=84.54 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=53.2
Q ss_pred cCCCEEEEEcCCCchhHHHHHh----cC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR----RG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~----~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
.++.+|||+|||+|.++..+++ .| .+|+|+|+|+.|++.|+++...++ +.+..+++..+...
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~------~~~~~~~~~~l~~~------ 126 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG------VTFRQAVSDELVAE------ 126 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC------CeEEEEeccccccc------
Confidence 4667999999999999988875 23 499999999999999998876444 34444544332211
Q ss_pred hhhcccCCCCCCCCcccEEEEC
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMN 256 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~n 256 (324)
...||.|+++
T Consensus 127 ------------~~~fD~V~~~ 136 (232)
T PRK06202 127 ------------GERFDVVTSN 136 (232)
T ss_pred ------------CCCccEEEEC
Confidence 1359999997
No 179
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.51 E-value=6.6e-07 Score=80.08 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.++++.. .++.++.+|+.+....
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~----------- 95 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLE----------- 95 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCC-----------
Confidence 45699999999999999999865 478999999999998876543 2578899998764321
Q ss_pred cCCCCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 240 SEGNSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
...||.|+++-.- ....++..+.. +++ +|.+.+-++...
T Consensus 96 -------~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~--------~G~l~~~~~~~~ 139 (240)
T TIGR02072 96 -------DSSFDLIVSNLALQWCDDLSQALSELARVLKP--------GGLLAFSTFGPG 139 (240)
T ss_pred -------CCceeEEEEhhhhhhccCHHHHHHHHHHHcCC--------CcEEEEEeCCcc
Confidence 2359999997432 12345555544 554 587777665554
No 180
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.50 E-value=8.2e-07 Score=82.93 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=71.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|++++|++||.|+++..+++.. ++|+|+|.++.|++.+++++.. . ++++++++|..++...... .
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~----~ri~~i~~~f~~l~~~l~~-~--- 87 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F----GRFTLVHGNFSNLKEVLAE-G--- 87 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C----CcEEEEeCCHHHHHHHHHc-C---
Confidence 3578899999999999999999863 6999999999999999988754 3 3799999999998654321 0
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV 270 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~ 270 (324)
...+|.|++|+=.++.++-+.-++
T Consensus 88 ----------~~~vDgIl~DLGvSs~Qld~~~RG 111 (296)
T PRK00050 88 ----------LGKVDGILLDLGVSSPQLDDAERG 111 (296)
T ss_pred ----------CCccCEEEECCCccccccCCCcCC
Confidence 124899999876665555555555
No 181
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.50 E-value=1.2e-08 Score=79.41 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=45.9
Q ss_pred EEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCC
Q psy16898 167 LDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244 (324)
Q Consensus 167 LDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
||+|||+|.++..++.. +.+++++|+|+.|++.+++++.... .. +...+..+..+......
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~~-------------- 63 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG--ND-NFERLRFDVLDLFDYDP-------------- 63 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC--------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--Cc-ceeEEEeecCChhhccc--------------
Confidence 79999999999999886 6799999999999999988888766 33 44455544444322210
Q ss_pred CCCCcccEEEEC
Q psy16898 245 TGGTAVARVIMN 256 (324)
Q Consensus 245 ~~~~~fD~Vi~n 256 (324)
...||.|++.
T Consensus 64 --~~~fD~V~~~ 73 (99)
T PF08242_consen 64 --PESFDLVVAS 73 (99)
T ss_dssp ------SEEEEE
T ss_pred --ccccceehhh
Confidence 1359999885
No 182
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.45 E-value=4.8e-07 Score=83.73 Aligned_cols=95 Identities=9% Similarity=0.078 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhc-----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR-----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~-----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
++.+|||+|||+|.++..+++. ++.|+|+|+|+.|++.|+++. + ++.+..+|+.++...
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-------~-~~~~~~~d~~~lp~~-------- 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-------P-QVTFCVASSHRLPFA-------- 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-------C-CCeEEEeecccCCCc--------
Confidence 4578999999999999988863 247999999999999987532 2 578888998764321
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
...||.|+...-. .++..+.. |++ +|.+.+.+....
T Consensus 149 ----------~~sfD~I~~~~~~---~~~~e~~rvLkp--------gG~li~~~p~~~ 185 (272)
T PRK11088 149 ----------DQSLDAIIRIYAP---CKAEELARVVKP--------GGIVITVTPGPR 185 (272)
T ss_pred ----------CCceeEEEEecCC---CCHHHHHhhccC--------CCEEEEEeCCCc
Confidence 1359999875421 23333433 554 488776655443
No 183
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.44 E-value=5.9e-07 Score=78.85 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=58.3
Q ss_pred HHHhhccCCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898 155 RVTKEVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~ 233 (324)
.+.+.++++.+|||+|||+|.++..+++. +..++|+|+++.+++.+++ ++ ++++++|+.+.+....
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~~------~~~~~~d~~~~l~~~~--- 72 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----RG------VNVIQGDLDEGLEAFP--- 72 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----cC------CeEEEEEhhhcccccC---
Confidence 45556778899999999999999988864 5589999999999988753 23 5678888765322110
Q ss_pred hhhhcccCCCCCCCCcccEEEECCh
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIMNLP 258 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~npP 258 (324)
...||.|+++.+
T Consensus 73 -------------~~sfD~Vi~~~~ 84 (194)
T TIGR02081 73 -------------DKSFDYVILSQT 84 (194)
T ss_pred -------------CCCcCEEEEhhH
Confidence 135999999854
No 184
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.43 E-value=1.8e-06 Score=77.79 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=82.5
Q ss_pred CEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 164 DLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
..+||+|||.|.+.+.+|++ -..++|||+....+..|.+-+...+ +. |+.+++.||.+++.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~--l~-Nlri~~~DA~~~l~~~~~---------- 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG--LK-NLRLLCGDAVEVLDYLIP---------- 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC--CC-cEEEEcCCHHHHHHhcCC----------
Confidence 48999999999999999995 3589999999999999999999988 87 899999999999887543
Q ss_pred CCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 242 GNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
..+.|.|.+|-|+- ...|++.+.. |+++ |.||+-
T Consensus 117 -----~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g--------G~l~~a 163 (227)
T COG0220 117 -----DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPG--------GVLHFA 163 (227)
T ss_pred -----CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCC--------CEEEEE
Confidence 23689999998871 2368888876 7765 888853
No 185
>PRK04148 hypothetical protein; Provisional
Probab=98.41 E-value=1.4e-06 Score=71.82 Aligned_cols=71 Identities=11% Similarity=0.009 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCch-hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGP-FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~-~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
++.+++|+|||.|. ++..+++.|..|+|+|+|+.+++.++++ + +.++.+|.++--.+...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------~~~v~dDlf~p~~~~y~--------- 76 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------LNAFVDDLFNPNLEIYK--------- 76 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------CeEEECcCCCCCHHHHh---------
Confidence 46789999999996 9999999999999999999988877543 4 46888898865444332
Q ss_pred CCCCCCCCcccEEEE-CChh
Q psy16898 241 EGNSTGGTAVARVIM-NLPA 259 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~-npP~ 259 (324)
.+|.|.. .||.
T Consensus 77 --------~a~liysirpp~ 88 (134)
T PRK04148 77 --------NAKLIYSIRPPR 88 (134)
T ss_pred --------cCCEEEEeCCCH
Confidence 3898854 6665
No 186
>KOG1500|consensus
Probab=98.40 E-value=5.5e-07 Score=83.81 Aligned_cols=108 Identities=20% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++.|||+|||+|.++..+|+.|+ +|+|||.|. |.++|++-++.|+ +.++++++.|.+.+.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~--~~~rItVI~GKiEdieL------------- 240 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNN--LADRITVIPGKIEDIEL------------- 240 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCC--ccceEEEccCccccccC-------------
Confidence 688999999999999999999988 999999875 7899999999999 98999999999887522
Q ss_pred CCCCCCCCcccEEEECChhhh---HHHHHHH---hc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 241 EGNSTGGTAVARVIMNLPATA---VEYVRYL---KV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a---~~~l~~~---~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
+++.|+||..|-... ...|+.. +. |+|.. +.-..-|-+|.--|+.
T Consensus 241 ------PEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~G-kMfPT~gdiHlAPFsD 292 (517)
T KOG1500|consen 241 ------PEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNG-KMFPTVGDIHLAPFSD 292 (517)
T ss_pred ------chhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCC-cccCcccceeecccch
Confidence 245899999886532 1234333 23 56542 1111236677666654
No 187
>PLN02823 spermine synthase
Probab=98.36 E-value=3.6e-06 Score=80.17 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhc-C-CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR-G-AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~-g-~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
..++||.+|+|.|..+..+++. + .+|++||+++..++.+++....++..+ +.+++++.+|++.++...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~--------- 173 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR--------- 173 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC---------
Confidence 4579999999999999998884 3 489999999999999999986542112 248999999999998542
Q ss_pred ccCCCCCCCCcccEEEECChhh----------hHHHHH-HHhc-cchhhcCCCCCCCEEEEE
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT----------AVEYVR-YLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~----------a~~~l~-~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
..+||+|++|+++. ..+|++ .++. |+++ |++.+-
T Consensus 174 --------~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~--------Gvlv~q 219 (336)
T PLN02823 174 --------DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG--------GIFVTQ 219 (336)
T ss_pred --------CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCC--------cEEEEe
Confidence 24599999996431 346776 5555 6654 776554
No 188
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.34 E-value=2e-06 Score=79.22 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=72.0
Q ss_pred HHHhh--ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 155 RVTKE--VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 155 ~~~~~--~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
++++. +.++..|+|+|+|.|.++..+++.+.+|+++|+++..++.+++....+ ++++++++|+.++-.....
T Consensus 21 ~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~-----~~~~vi~~D~l~~~~~~~~- 94 (262)
T PF00398_consen 21 KIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN-----PNVEVINGDFLKWDLYDLL- 94 (262)
T ss_dssp HHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC-----SSEEEEES-TTTSCGGGHC-
T ss_pred HHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc-----ccceeeecchhccccHHhh-
Confidence 45554 447899999999999999999999999999999999999999876633 3899999999875433210
Q ss_pred hhhhhcccCCCCCCCCcccEEEECChhh-hHHHHHHHhc
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMNLPAT-AVEYVRYLKV 270 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~-a~~~l~~~~~ 270 (324)
......|+.|+|+. +..++..+..
T Consensus 95 --------------~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 95 --------------KNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp --------------SSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred --------------cCCceEEEEEecccchHHHHHHHhh
Confidence 12367899999984 3345555544
No 189
>KOG1271|consensus
Probab=98.34 E-value=7.5e-07 Score=76.44 Aligned_cols=58 Identities=22% Similarity=0.224 Sum_probs=54.0
Q ss_pred EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 165 LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|||||||.|.+-..+++.|. ..+|+|-|+.|++.|+.-++.++ +++.|+|.+.|+.+
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQQLDITD 129 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC--CCcceeEEEeeccC
Confidence 999999999999999999876 59999999999999999999999 98779999999876
No 190
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=77.07 Aligned_cols=100 Identities=21% Similarity=0.170 Sum_probs=72.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
..-.+|.|||||+|.-+-.++++ ++.|+|+|.|++|++.|+. . +. +++|..+|++++..+
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----r--lp-~~~f~~aDl~~w~p~---------- 90 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----R--LP-DATFEEADLRTWKPE---------- 90 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----h--CC-CCceecccHhhcCCC----------
Confidence 35679999999999999999985 7899999999999999853 2 44 689999999987553
Q ss_pred ccCCCCCCCCcccEEEEC-----ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898 239 QSEGNSTGGTAVARVIMN-----LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL 296 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~n-----pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~ 296 (324)
..+|+++.| +|+. .+.+..+.. |.+ ||++-+..=...+++
T Consensus 91 ---------~~~dllfaNAvlqWlpdH-~~ll~rL~~~L~P--------gg~LAVQmPdN~dep 136 (257)
T COG4106 91 ---------QPTDLLFANAVLQWLPDH-PELLPRLVSQLAP--------GGVLAVQMPDNLDEP 136 (257)
T ss_pred ---------Cccchhhhhhhhhhcccc-HHHHHHHHHhhCC--------CceEEEECCCccCch
Confidence 237888877 5553 233333333 444 577777654444443
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.33 E-value=8.2e-07 Score=89.67 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC----------CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG----------AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g----------~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
.+.+|||+|||+|.|.+.++.+. ..++|+|+++.++..++.|+...+ .. .+.+.+.|..........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~--~~-~~~i~~~d~l~~~~~~~~ 107 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA--LL-EINVINFNSLSYVLLNIE 107 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC--CC-Cceeeecccccccccccc
Confidence 34589999999999999988631 378999999999999999998664 22 355566664432110000
Q ss_pred HhhhhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+ ....||+||.|||+..
T Consensus 108 ~-------------~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 108 S-------------YLDLFDIVITNPPYGR 124 (524)
T ss_pred c-------------ccCcccEEEeCCCccc
Confidence 0 0235999999999974
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.31 E-value=9.5e-06 Score=74.13 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=93.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
.+.++||=+|.|.|..+..+.+.. .+|++||+++..++.+++-........ +.+++++.+|++.++.+...
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~------ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQE------ 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSS------
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccC------
Confidence 467899999999999999999854 599999999999999998766532001 24899999999999987421
Q ss_pred cccCCCCCCCCcccEEEECChh--------hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHH----hHhhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPA--------TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETK----KKIKS 304 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~--------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~----~~v~~ 304 (324)
.+||+|++|++. .+.+|.+.++. |+++ |++.+..-+........ +.++.
T Consensus 149 ----------~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~--------Gv~v~~~~~~~~~~~~~~~i~~tl~~ 210 (246)
T PF01564_consen 149 ----------EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD--------GVLVLQAGSPFLHPELFKSILKTLRS 210 (246)
T ss_dssp ----------T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE--------EEEEEEEEETTTTHHHHHHHHHHHHT
T ss_pred ----------CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC--------cEEEEEccCcccchHHHHHHHHHHHH
Confidence 159999998765 24688888877 8876 88877765554443332 23455
Q ss_pred cCCCceEEEEeec
Q psy16898 305 YDPSYATLIRGIR 317 (324)
Q Consensus 305 y~~~~~~~i~~~~ 317 (324)
..+....-...+.
T Consensus 211 ~F~~v~~~~~~vP 223 (246)
T PF01564_consen 211 VFPQVKPYTAYVP 223 (246)
T ss_dssp TSSEEEEEEEECT
T ss_pred hCCceEEEEEEcC
Confidence 5555444444433
No 193
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.27 E-value=1.7e-06 Score=79.78 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCch----hHHHHHhc-------CCEEEEEeCCHHHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGP----FSIPAARR-------GAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 162 ~g~~VLDl~~G~G~----~al~~a~~-------g~~V~avD~~~~a~~~a~~N~ 204 (324)
++.+|||+|||+|. +++.+++. +.+|+|+|+|+.|++.|++++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45699999999995 66666652 358999999999999999864
No 194
>KOG1122|consensus
Probab=98.21 E-value=8.9e-06 Score=78.01 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh--cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR--RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~--~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
.++|++|||+||..|+-+.++|. ++. .|+|+|.|..-++.++.|+.+-| +. +..+.+.|..+|.....
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlG--v~-ntiv~n~D~~ef~~~~~------ 309 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLG--VT-NTIVSNYDGREFPEKEF------ 309 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhC--CC-ceEEEccCccccccccc------
Confidence 56899999999999999998887 444 89999999999999999999999 87 78899999987754321
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
+..||.|++|-|.++
T Consensus 310 ----------~~~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 310 ----------PGSFDRVLLDAPCSG 324 (460)
T ss_pred ----------CcccceeeecCCCCC
Confidence 236999999999876
No 195
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.20 E-value=3.1e-06 Score=70.13 Aligned_cols=57 Identities=33% Similarity=0.469 Sum_probs=50.4
Q ss_pred EEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 165 LVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++|+|||+|.+++.+++.+. +|+++|.+|.+++.+++|++.|+ +. ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~--~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN--LP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC--CC-cEEEEEeeeeC
Confidence 489999999999999998654 79999999999999999999998 76 68888877654
No 196
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.16 E-value=2.9e-06 Score=79.05 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=50.4
Q ss_pred CCEEEEEcCCCchh-HHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHH-HHHHHHHHhhhhhc
Q psy16898 163 GDLVLDVFAGVGPF-SIPAAR-RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARD-FLQTDARAHLVRWS 238 (324)
Q Consensus 163 g~~VLDl~~G~G~~-al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~-~~~~~~~~~~~~~~ 238 (324)
.-++||+|+|.-.+ .+..++ .|.+++|.|+++.+++.|++|++.| + +.++|+++...-.. ++....
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~-------- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPN--LESRIELRKQKNPDNIFDGII-------- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T---TTTEEEEE--ST-SSTTTST--------
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccc--cccceEEEEcCCccccchhhh--------
Confidence 45899999998866 566665 5889999999999999999999999 8 98899988664222 111110
Q ss_pred ccCCCCCCCCcccEEEECChhh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
.....||..++|||..
T Consensus 173 ------~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 173 ------QPNERFDFTMCNPPFY 188 (299)
T ss_dssp ------T--S-EEEEEE-----
T ss_pred ------cccceeeEEecCCccc
Confidence 0124699999999985
No 197
>KOG2671|consensus
Probab=98.14 E-value=1.5e-06 Score=81.19 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=71.9
Q ss_pred ecCcChHHHHHHHh---hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHH-------HHHHHHHHhCCCCC-C
Q psy16898 145 WNSRLSTEHERVTK---EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYA-------WLQASIRLNERQVK-T 213 (324)
Q Consensus 145 ~~~r~~~e~~~~~~---~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~-------~a~~N~~~n~~~l~-~ 213 (324)
-+..+.+|.-.+.+ .+++|+.|+|.|.|||++-+.+|.-|+.|+|-||+-.++. ..+.|.+..| .. .
T Consensus 188 GnTSmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg--~~~~ 265 (421)
T KOG2671|consen 188 GNTSMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYG--SSSQ 265 (421)
T ss_pred CCcccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhC--Ccch
Confidence 34455555444433 4679999999999999999999999999999999999887 2355666555 32 2
Q ss_pred CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHH
Q psy16898 214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVR 266 (324)
Q Consensus 214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~ 266 (324)
-+.++.+|...-.-.. ...||.||+|||+.-.+-..
T Consensus 266 fldvl~~D~sn~~~rs-----------------n~~fDaIvcDPPYGVRe~~r 301 (421)
T KOG2671|consen 266 FLDVLTADFSNPPLRS-----------------NLKFDAIVCDPPYGVREGAR 301 (421)
T ss_pred hhheeeecccCcchhh-----------------cceeeEEEeCCCcchhhhhh
Confidence 3455666654322111 24599999999997554333
No 198
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.12 E-value=1.9e-05 Score=73.37 Aligned_cols=92 Identities=23% Similarity=0.232 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.|++|||+|||.|+++..++.+|+ .|+|+|.++..+...+--.+.-+ .+..+..+..-+.+...
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~------------- 179 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPN------------- 179 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccc-------------
Confidence 799999999999999999999998 89999999987665443223223 22123333233333222
Q ss_pred CCCCCCCCcccEEEE-CChh---hhHHHHHHHhc-cchh
Q psy16898 241 EGNSTGGTAVARVIM-NLPA---TAVEYVRYLKV-LTRE 274 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~-npP~---~a~~~l~~~~~-l~~~ 274 (324)
...||.|++ -.=+ .....|..++. |+++
T Consensus 180 ------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 180 ------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred ------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 135999976 2222 24456777766 6654
No 199
>KOG2915|consensus
Probab=98.11 E-value=2e-05 Score=71.78 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=75.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.+|.+||+.|+|+|.++.++++.- .+++..|....-.+.|.+-.+..+ +.+++++.+.|+-..-....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF~~k------ 174 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGFLIK------ 174 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCcccc------
Confidence 5699999999999999999999953 499999999999999999999999 99999999999754211110
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cch
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTR 273 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~ 273 (324)
...+|.|.+|+|. .++.++.+.. ++.
T Consensus 175 ----------s~~aDaVFLDlPa-Pw~AiPha~~~lk~ 201 (314)
T KOG2915|consen 175 ----------SLKADAVFLDLPA-PWEAIPHAAKILKD 201 (314)
T ss_pred ----------ccccceEEEcCCC-hhhhhhhhHHHhhh
Confidence 1349999999998 5555555544 554
No 200
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.08 E-value=1.6e-05 Score=70.66 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=52.8
Q ss_pred EEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHH
Q psy16898 166 VLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQT 228 (324)
Q Consensus 166 VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~ 228 (324)
|+|+||--|.+++.++++|. +|+|+|+++..++.|++|++.++ +.+++++..+|..+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~ 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC
Confidence 68999999999999999886 89999999999999999999999 988999999999876654
No 201
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.08 E-value=1e-05 Score=72.95 Aligned_cols=54 Identities=28% Similarity=0.261 Sum_probs=41.4
Q ss_pred cCcChHHHHHHHhhc---cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHH
Q psy16898 146 NSRLSTEHERVTKEV---REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAW 199 (324)
Q Consensus 146 ~~r~~~e~~~~~~~~---~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~ 199 (324)
.+|-......+++.+ .+|.+|||+|||+|.|+..++++|+ +|+|+|+++.++..
T Consensus 56 vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 56 VSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 344333223345543 3788999999999999999999987 99999999987765
No 202
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.07 E-value=2.7e-05 Score=78.35 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+..+||+|||.|.|.+.+|+. ...++|+|+....+..+.+.+...+ +. |+.+++.|+..+.....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~--l~-N~~~~~~~~~~~~~~~~--------- 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN--IT-NFLLFPNNLDLILNDLP--------- 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC--CC-eEEEEcCCHHHHHHhcC---------
Confidence 4669999999999999999985 4599999999999999988888888 86 89999998765543321
Q ss_pred cCCCCCCCCcccEEEECChhh------------hHHHHHHHhc-cchhhcCCCCCCCEEEE
Q psy16898 240 SEGNSTGGTAVARVIMNLPAT------------AVEYVRYLKV-LTREEFGKLSRPPVLYL 287 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~------------a~~~l~~~~~-l~~~~~~~~~~~g~vh~ 287 (324)
...+|.|.+|-|+- ..+|++.+.. |++ ||.+|+
T Consensus 415 -------~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~--------gG~i~~ 460 (506)
T PRK01544 415 -------NNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKD--------NGNLVF 460 (506)
T ss_pred -------cccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCC--------CCEEEE
Confidence 13599999998871 2367777766 665 488884
No 203
>KOG1253|consensus
Probab=98.05 E-value=3.5e-06 Score=82.23 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=84.4
Q ss_pred hhccCCCEEEEEcCCCchhHHHHHh--cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhh
Q psy16898 158 KEVREGDLVLDVFAGVGPFSIPAAR--RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~G~~al~~a~--~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
..-.++-+|||..|++|.-++..|+ .|. +|+|+|.++.+++..++|++.|+ +.+.++...+|+...+.....-
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~-- 180 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMV-- 180 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhcccc--
Confidence 3345677999999999999999998 355 99999999999999999999999 8888999999999887653210
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~ 274 (324)
...||+|=+||=..+-.||+++.+ ...+
T Consensus 181 ------------~~~FDvIDLDPyGs~s~FLDsAvqav~~g 209 (525)
T KOG1253|consen 181 ------------AKFFDVIDLDPYGSPSPFLDSAVQAVRDG 209 (525)
T ss_pred ------------ccccceEecCCCCCccHHHHHHHHHhhcC
Confidence 145999999998888899999977 5543
No 204
>KOG4300|consensus
Probab=98.05 E-value=1.9e-05 Score=69.24 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=83.7
Q ss_pred EEEEEcCCCchhHHHHH-hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE-EEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898 165 LVLDVFAGVGPFSIPAA-RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS-ATQKDARDFLQTDARAHLVRWSQSEG 242 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a-~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~-~~~~D~~~~~~~~~~~~~~~~~~~~~ 242 (324)
.||++|||||+-=-..- +++++|+++|.|+.|-++|.+.++.+. -. ++. |+.+++++...- .
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k--~~-~~~~fvva~ge~l~~l-~------------ 142 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK--PL-QVERFVVADGENLPQL-A------------ 142 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc--Cc-ceEEEEeechhcCccc-c------------
Confidence 57999999998655544 478899999999999999999999886 54 566 999998876421 1
Q ss_pred CCCCCCcccEEEECChh----hhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCChhHHhHhhhc
Q psy16898 243 NSTGGTAVARVIMNLPA----TAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKSY 305 (324)
Q Consensus 243 ~~~~~~~fD~Vi~npP~----~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y 305 (324)
..++|.||.-+-- .+...|..++. |++ ||.+..-...+++..-+......+
T Consensus 143 ----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRp--------gG~iifiEHva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 143 ----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRP--------GGRIIFIEHVAGEYGFWNRILQQV 198 (252)
T ss_pred ----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCC--------CcEEEEEecccccchHHHHHHHHH
Confidence 2459999875422 24557777766 555 488888888888777666665443
No 205
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.93 E-value=4.7e-06 Score=72.37 Aligned_cols=59 Identities=37% Similarity=0.386 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|++|||+|+|+|-.++.+++.|+ .|++.|+.|.....++.|++.|+ +. +.+...|...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~--i~~~~~d~~g 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VS--ILFTHADLIG 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ce--eEEeeccccC
Confidence 799999999999999999999998 99999999999999999999999 75 8888888654
No 206
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.88 E-value=0.00029 Score=59.91 Aligned_cols=109 Identities=22% Similarity=0.261 Sum_probs=76.5
Q ss_pred HHhhc--cCCCEEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHH
Q psy16898 156 VTKEV--REGDLVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDA 230 (324)
Q Consensus 156 ~~~~~--~~g~~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~ 230 (324)
+++.+ ..|.-||++|.|||.|+-.+.++|. .++++|.|++.+..+.+. .+ .+.+++||+.+.-....
T Consensus 40 M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-------~p-~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 40 MASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-------YP-GVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-------CC-CccccccchhhHHHHHh
Confidence 44443 4677999999999999999999764 899999999999886431 22 57799999998754332
Q ss_pred HHhhhhhcccCCCCCCCCcccEEEECChhh------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC
Q psy16898 231 RAHLVRWSQSEGNSTGGTAVARVIMNLPAT------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
.. .+..||.||+-+|-. ..+.++.+.. +.. ||-+.-..+++.
T Consensus 112 e~-------------~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~--------gg~lvqftYgp~ 160 (194)
T COG3963 112 EH-------------KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA--------GGPLVQFTYGPL 160 (194)
T ss_pred hc-------------CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC--------CCeEEEEEecCC
Confidence 21 256799999986653 4566766655 333 355555555543
No 207
>PHA01634 hypothetical protein
Probab=97.85 E-value=3e-05 Score=62.84 Aligned_cols=47 Identities=15% Similarity=-0.006 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
.+++|+|+|+++|.-++.++-+|| +|+++|.++...+..++|++.|+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 789999999999999999999998 99999999999999999999987
No 208
>KOG1541|consensus
Probab=97.83 E-value=3e-05 Score=68.67 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~ 202 (324)
..-|||+|||+|.-+-.+...|...+|+|+||.|++.|.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH
Confidence 5689999999999999999999999999999999999987
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.82 E-value=0.0004 Score=65.81 Aligned_cols=98 Identities=26% Similarity=0.314 Sum_probs=74.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHH---hCCCCC-CCeEEEeccHHHHHHHHHHHh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRL---NERQVK-TPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~---n~~~l~-~~v~~~~~D~~~~~~~~~~~~ 233 (324)
++.-++||-+|.|-|--...+.|. +. +|+-||++|+|++.+++|..+ |+..+. .++++++.|+..|++...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~--- 363 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA--- 363 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc---
Confidence 455679999999999999999884 34 999999999999999977643 321133 389999999999998743
Q ss_pred hhhhcccCCCCCCCCcccEEEECChhh---------hHHHHHHHhc-cchh
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIMNLPAT---------AVEYVRYLKV-LTRE 274 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~npP~~---------a~~~l~~~~~-l~~~ 274 (324)
..||.||.|+|+- +.+|-..++. +++.
T Consensus 364 --------------~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~ 400 (508)
T COG4262 364 --------------DMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAET 400 (508)
T ss_pred --------------ccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcC
Confidence 3599999998872 2356555554 6554
No 210
>KOG1663|consensus
Probab=97.82 E-value=0.00012 Score=65.20 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
..+++||+|..||+-++..|. .+.+|+++|+|+++++++.+=.+.-+ +.++++++.+++.+.+.++..+.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a~esLd~l~~~~----- 145 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPALESLDELLADG----- 145 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecchhhhHHHHHhcC-----
Confidence 567999999999999888887 46799999999999999999888888 88899999999999999877642
Q ss_pred ccCCCCCCCCcccEEEECChh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~ 259 (324)
....||.+++|-=.
T Consensus 146 -------~~~tfDfaFvDadK 159 (237)
T KOG1663|consen 146 -------ESGTFDFAFVDADK 159 (237)
T ss_pred -------CCCceeEEEEccch
Confidence 13569999998533
No 211
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.79 E-value=3.5e-05 Score=66.69 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
++.+|||+||++|+|+-.+++++ ++|+|+|+.+. .. .. ++.++++|..+..... .+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~--~~-~~~~i~~d~~~~~~~~---~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP--LQ-NVSFIQGDITNPENIK---DIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS---T-TEEBTTGGGEEEEHSH---HGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc--cc-ceeeeecccchhhHHH---hhhhhc
Confidence 34899999999999999999987 59999999986 22 33 5777778875421110 111110
Q ss_pred ccCCCCCCCCcccEEEECC-----------hhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCChhHHhHhhh
Q psy16898 239 QSEGNSTGGTAVARVIMNL-----------PATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETKKKIKS 304 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~np-----------P~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~ 304 (324)
. .....+|.|++|. .............+ .+..+++||.+.+-.|...+.......++.
T Consensus 86 ~-----~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~---a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 86 P-----ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLL---ALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp G-----TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHH---HHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred c-----ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHH---HHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 0 0124699999998 22222211111110 011234569888888887655555555443
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.77 E-value=0.00015 Score=64.33 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=43.4
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh-cCC-EEEEEeCCHHHHHHHHHHHHH-------hCCCC-CCCeEEEeccHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR-RGA-IVAANDLNPDSYAWLQASIRL-------NERQV-KTPISATQKDARDF 225 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N~~~-------n~~~l-~~~v~~~~~D~~~~ 225 (324)
+.++++++|||||+|...+.+|. .++ +++|||+.+...+.|+.+.+. .+ . ..++++.++|..+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g--~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG--KRPGKVELIHGDFLDP 113 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT--B---EEEEECS-TTTH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh--cccccceeeccCcccc
Confidence 56889999999999999988876 466 799999999999888765542 23 2 23688899997653
No 213
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00042 Score=61.16 Aligned_cols=124 Identities=20% Similarity=0.160 Sum_probs=79.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHL 234 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~ 234 (324)
+.+|.+|+||||-.|+++..++++.. .|+|+|+.|- -. +. ++.++.+|+.+- ....... +
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~--~~-~V~~iq~d~~~~~~~~~l~~~-l 107 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KP--IP-GVIFLQGDITDEDTLEKLLEA-L 107 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------cc--CC-CceEEeeeccCccHHHHHHHH-c
Confidence 56899999999999999999998532 5999999983 12 33 689999998653 2221111 1
Q ss_pred hhhcccCCCCCCCCcccEEEECChh--hhHHHHHHHhc--cch----hhcCCCCCCCEEEEEEcccCCChhHHhHhhhcC
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPA--TAVEYVRYLKV--LTR----EEFGKLSRPPVLYLYCFLPKMDLETKKKIKSYD 306 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~--~a~~~l~~~~~--l~~----~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~~y~ 306 (324)
. ...+|+|++|+-. ....-.+.++. |.. .....++++|.+.+-.|...........++.+.
T Consensus 108 ~-----------~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 108 G-----------GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred C-----------CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 0 1236999988633 11111111111 000 001235567999999999998888888876554
Q ss_pred CCc
Q psy16898 307 PSY 309 (324)
Q Consensus 307 ~~~ 309 (324)
..+
T Consensus 177 ~~v 179 (205)
T COG0293 177 RKV 179 (205)
T ss_pred cee
Confidence 333
No 214
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.75 E-value=7.3e-05 Score=70.75 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=59.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.+|.++||+||++|+|+-.++++|++|+|||..+- ..++..+ .+|+.+.+|...+.+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-----~~~L~~~-----~~V~h~~~d~fr~~p~----------- 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-----AQSLMDT-----GQVEHLRADGFKFRPP----------- 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-----CHhhhCC-----CCEEEEeccCcccCCC-----------
Confidence 358999999999999999999999999999996652 2223222 3799999998876542
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV 270 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~ 270 (324)
...+|.+++|.-..+......+..
T Consensus 268 -------~~~vDwvVcDmve~P~rva~lm~~ 291 (357)
T PRK11760 268 -------RKNVDWLVCDMVEKPARVAELMAQ 291 (357)
T ss_pred -------CCCCCEEEEecccCHHHHHHHHHH
Confidence 134999999964443334444433
No 215
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00046 Score=64.21 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=78.1
Q ss_pred CEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCC-CCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 164 DLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQ-VKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~-l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
++||-+|.|.|+.+-.+++.. .+++.||+++..++.+++-+..-... .+.+++++.+|+.+++.+..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~---------- 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE---------- 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC----------
Confidence 599999999999999999965 49999999999999999876543210 22589999999999998742
Q ss_pred CCCCCCCCcccEEEECC--hh------hhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 241 EGNSTGGTAVARVIMNL--PA------TAVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~np--P~------~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
..||+||+|. |. ...+|.+..+. |++. |++..-
T Consensus 148 -------~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~--------Gi~v~q 189 (282)
T COG0421 148 -------EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKED--------GIFVAQ 189 (282)
T ss_pred -------CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCC--------cEEEEe
Confidence 2599999984 32 14678888876 7765 776655
No 216
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.73 E-value=4.2e-05 Score=71.00 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=55.5
Q ss_pred EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
+|+|||||.|++++.+.+.|. .|.++|+++.|++..+.|.. + .++++|+.++.....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~--~-------~~~~~Di~~~~~~~~------------- 59 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP--N-------KLIEGDITKIDEKDF------------- 59 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC--C-------CCccCccccCchhhc-------------
Confidence 689999999999999988888 68999999999998887653 1 155677776543211
Q ss_pred CCCCCcccEEEECChhhh
Q psy16898 244 STGGTAVARVIMNLPATA 261 (324)
Q Consensus 244 ~~~~~~fD~Vi~npP~~a 261 (324)
...+|.++..||...
T Consensus 60 ---~~~~D~l~~gpPCq~ 74 (275)
T cd00315 60 ---IPDIDLLTGGFPCQP 74 (275)
T ss_pred ---CCCCCEEEeCCCChh
Confidence 124999999999853
No 217
>PRK11524 putative methyltransferase; Provisional
Probab=97.70 E-value=8.8e-05 Score=69.15 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=45.2
Q ss_pred HHhhc-cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 156 VTKEV-REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 156 ~~~~~-~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
++... .+|+.|||.|||+|+.++.+.+.|.+.+|+|++++.++.|++.+..
T Consensus 201 lI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 201 IILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 44433 4899999999999999999999999999999999999999998753
No 218
>KOG3010|consensus
Probab=97.69 E-value=5.9e-05 Score=67.65 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=65.4
Q ss_pred hhccCCC-EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 158 KEVREGD-LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 158 ~~~~~g~-~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
....++. .++|+|||+|.-++.+|..-.+|+|+|+|+.|++.|++.-...- .....++...+..+++..
T Consensus 28 a~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~g~-------- 97 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLLGG-------- 97 (261)
T ss_pred HhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCccc--ccCCccccccccccccCC--------
Confidence 3344554 89999999996667777766699999999999998876433221 111233333444433321
Q ss_pred hcccCCCCCCCCcccEEEE-------CChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 237 WSQSEGNSTGGTAVARVIM-------NLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~-------npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
..+.|.|++ |++. |...+.. |++ +||++.+.++..
T Consensus 98 ----------e~SVDlI~~Aqa~HWFdle~----fy~~~~rvLRk-------~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 98 ----------EESVDLITAAQAVHWFDLER----FYKEAYRVLRK-------DGGLIAVWNYND 140 (261)
T ss_pred ----------CcceeeehhhhhHHhhchHH----HHHHHHHHcCC-------CCCEEEEEEccC
Confidence 245888876 3443 4444444 554 477988888874
No 219
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.69 E-value=9.1e-05 Score=65.60 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=36.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~ 202 (324)
-.+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 4589999999999999999999999999999999999999875
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.57 E-value=0.00038 Score=65.31 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=74.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+|+.++|.-+|-|+.+..+++. .++|+|+|.++.|++.++++++..+ +++++++++..++........
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~----~R~~~i~~nF~~l~~~l~~~~---- 89 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE----GRVVLIHDNFANFFEHLDELL---- 89 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC----CcEEEEeCCHHHHHHHHHhcC----
Confidence 357889999999999999999985 3699999999999999999886433 479999999988765432210
Q ss_pred cccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV 270 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~ 270 (324)
...+|.|++|+=-++.++-+.-++
T Consensus 90 ---------~~~vDgIl~DLGvSS~Qld~~~RG 113 (305)
T TIGR00006 90 ---------VTKIDGILVDLGVSSPQLDDPERG 113 (305)
T ss_pred ---------CCcccEEEEeccCCHhhcCCCCCC
Confidence 134999999987777666666666
No 221
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.53 E-value=0.0002 Score=63.58 Aligned_cols=70 Identities=16% Similarity=0.226 Sum_probs=62.4
Q ss_pred HHhhccCCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898 156 VTKEVREGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227 (324)
Q Consensus 156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~ 227 (324)
+++.++.+..++|+||--|++++.+.+.+. .+++.|+++..++.|.+|+..++ +.+++++..+|....+.
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~ 81 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLE 81 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccC
Confidence 556778888899999999999999999653 99999999999999999999999 88899999999866544
No 222
>PRK13699 putative methylase; Provisional
Probab=97.53 E-value=0.00028 Score=63.71 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=45.2
Q ss_pred HHhh-ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898 156 VTKE-VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 156 ~~~~-~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n 207 (324)
++.. -.+|+.|||.|||+|+.++.+.+.|.+.+|+|+++..++.+.+.++.-
T Consensus 156 ~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 156 LIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4443 458999999999999999999999999999999999999998877643
No 223
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.52 E-value=0.00025 Score=67.51 Aligned_cols=101 Identities=14% Similarity=0.085 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCC-------CCCCeEEEeccHHHHHHHHHHHh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQ-------VKTPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~-------l~~~v~~~~~D~~~~~~~~~~~~ 233 (324)
++.+|||||||-|+=..-..+.+ ..++|+|++..+++.|++..+..+++ ..=...++.+|+..-. ..+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~---l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSES---LREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSH---HHCT
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccch---hhhh
Confidence 68899999999888666666554 49999999999999999988321100 1114678888886421 1110
Q ss_pred hhhhcccCCCCCCCCcccEEEECC--------hhhhHHHHHHHhc-cchh
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIMNL--------PATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~np--------P~~a~~~l~~~~~-l~~~ 274 (324)
+. .....||+|-|-. ...+..++..+.. |+++
T Consensus 139 ~~---------~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 139 LP---------PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp SS---------STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cc---------ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 00 0124699998742 2345668888776 7775
No 224
>KOG1661|consensus
Probab=97.48 E-value=0.00025 Score=62.39 Aligned_cols=96 Identities=21% Similarity=0.220 Sum_probs=68.9
Q ss_pred hccCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCC------CCC-CCeEEEeccHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNER------QVK-TPISATQKDARDFLQ 227 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~------~l~-~~v~~~~~D~~~~~~ 227 (324)
.+.+|...||+|+|+|+++..+++ .|..++|||.-++.++++++|+...-. .++ .++.++.+|.+....
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~ 158 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA 158 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence 478999999999999999998886 244569999999999999999975320 011 367888999887544
Q ss_pred HHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchh
Q psy16898 228 TDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~ 274 (324)
+. ..||.|-+- +.+.+..+.+.. |+++
T Consensus 159 e~------------------a~YDaIhvG--Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 159 EQ------------------APYDAIHVG--AAASELPQELLDQLKPG 186 (237)
T ss_pred cc------------------CCcceEEEc--cCccccHHHHHHhhccC
Confidence 42 349999886 223344444444 5544
No 225
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.46 E-value=0.0019 Score=56.43 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=71.1
Q ss_pred ccCCC-EEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGD-LVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~-~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.... +++|+|+|-|-=|+++|- ...+|+.+|.+..-+..+++-+..-+ ++ |++++++.+.+ ...
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~--L~-nv~v~~~R~E~--~~~------- 112 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG--LS-NVEVINGRAEE--PEY------- 112 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT---S-SEEEEES-HHH--TTT-------
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC--CC-CEEEEEeeecc--ccc-------
Confidence 44444 899999999998888875 45699999999999999999888888 87 89999999998 110
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEE
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLY 288 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y 288 (324)
...||.|++=-=.....+++.... ++++ |.+.+|
T Consensus 113 ----------~~~fd~v~aRAv~~l~~l~~~~~~~l~~~--------G~~l~~ 147 (184)
T PF02527_consen 113 ----------RESFDVVTARAVAPLDKLLELARPLLKPG--------GRLLAY 147 (184)
T ss_dssp ----------TT-EEEEEEESSSSHHHHHHHHGGGEEEE--------EEEEEE
T ss_pred ----------CCCccEEEeehhcCHHHHHHHHHHhcCCC--------CEEEEE
Confidence 245999998533222346666665 5543 666555
No 226
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.44 E-value=8.8e-05 Score=66.11 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 164 DLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
.++||||||||-++..+-....+.+|+|+|..|++.|.+. + +- =+...+|+..|+....
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g--~Y--D~L~~Aea~~Fl~~~~------------- 185 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----G--LY--DTLYVAEAVLFLEDLT------------- 185 (287)
T ss_pred ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----c--ch--HHHHHHHHHHHhhhcc-------------
Confidence 6999999999999999988888999999999999998652 2 22 2455677777665321
Q ss_pred CCCCCcccEEEEC--Chh
Q psy16898 244 STGGTAVARVIMN--LPA 259 (324)
Q Consensus 244 ~~~~~~fD~Vi~n--pP~ 259 (324)
..+||.|+.- +|+
T Consensus 186 ---~er~DLi~AaDVl~Y 200 (287)
T COG4976 186 ---QERFDLIVAADVLPY 200 (287)
T ss_pred ---CCcccchhhhhHHHh
Confidence 3569988763 455
No 227
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.43 E-value=0.00012 Score=73.35 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred eecCcChHHHHH-HHhhc--cCCCEEEEEcCCCchhHHHHHhc----C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCC
Q psy16898 144 YWNSRLSTEHER-VTKEV--REGDLVLDVFAGVGPFSIPAARR----G--AIVAANDLNPDSYAWLQASIRLNERQVKTP 214 (324)
Q Consensus 144 f~~~r~~~e~~~-~~~~~--~~g~~VLDl~~G~G~~al~~a~~----g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~ 214 (324)
|+.|+ +.-+ +++.+ .+..+|+|.+||+|++-+.+++. . ...+|.|+++..+..++.|+-.++ +..+
T Consensus 168 fyTP~---~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg--i~~~ 242 (489)
T COG0286 168 FYTPR---EVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG--IEGD 242 (489)
T ss_pred cCChH---HHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC--CCcc
Confidence 45566 4333 33333 36779999999999999888762 1 579999999999999999999999 7533
Q ss_pred eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHH
Q psy16898 215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVE 263 (324)
Q Consensus 215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~ 263 (324)
+....+|...-+..... .....||.|++|||.+...
T Consensus 243 ~~i~~~dtl~~~~~~~~-------------~~~~~~D~viaNPPf~~~~ 278 (489)
T COG0286 243 ANIRHGDTLSNPKHDDK-------------DDKGKFDFVIANPPFSGKG 278 (489)
T ss_pred ccccccccccCCccccc-------------CCccceeEEEeCCCCCccc
Confidence 44555554322111000 0124599999999996443
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.43 E-value=0.00043 Score=57.63 Aligned_cols=64 Identities=22% Similarity=0.119 Sum_probs=49.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+...|+|+|||-|.++..++. .+.+|+|+|.++..++.+.+..+..+..+..+.++..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 4577999999999999999998 366999999999999999888876551122345555555443
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.43 E-value=0.0032 Score=56.19 Aligned_cols=110 Identities=21% Similarity=0.169 Sum_probs=71.9
Q ss_pred ecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeE
Q psy16898 145 WNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216 (324)
Q Consensus 145 ~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~ 216 (324)
|||.-+.--..++.. +++|.+||-||+.+|+...+++.- ...|+|||.|+.+.+.+-.=++.-. |+-
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-----NIi 125 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-----NII 125 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-----TEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-----cee
Confidence 777644432233322 558999999999999999999982 3499999999999888875554332 799
Q ss_pred EEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhhhHHHHHHHhc-cchh
Q psy16898 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 217 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~a~~~l~~~~~-l~~~ 274 (324)
.+-+||+.-..-. .+ -...|+|+.|. |..+.-++..+.. ||++
T Consensus 126 PIl~DAr~P~~Y~---~l------------v~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 126 PILEDARHPEKYR---ML------------VEMVDVIFQDVAQPDQARIAALNARHFLKPG 171 (229)
T ss_dssp EEES-TTSGGGGT---TT------------S--EEEEEEE-SSTTHHHHHHHHHHHHEEEE
T ss_pred eeeccCCChHHhh---cc------------cccccEEEecCCChHHHHHHHHHHHhhccCC
Confidence 9999998522210 01 23599999996 5555567777766 7765
No 230
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.42 E-value=0.0016 Score=58.81 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.|++||=+|=+ -..|+++|. ..++|+-+|+++..+++.++.++..+ ++ ++.+..|+++-+++..
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~g--l~--i~~~~~DlR~~LP~~~--------- 109 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEG--LP--IEAVHYDLRDPLPEEL--------- 109 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT------EEEE---TTS---TTT---------
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcC--Cc--eEEEEecccccCCHHH---------
Confidence 68899877733 344555554 45699999999999999999999999 86 9999999998766532
Q ss_pred cCCCCCCCCcccEEEECChhhh
Q psy16898 240 SEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a 261 (324)
..+||.++.|||+..
T Consensus 110 -------~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 110 -------RGKFDVFFTDPPYTP 124 (243)
T ss_dssp -------SS-BSEEEE---SSH
T ss_pred -------hcCCCEEEeCCCCCH
Confidence 245999999999953
No 231
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.40 E-value=0.00038 Score=65.29 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=52.1
Q ss_pred EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
+++|||||.|++++.+.+.|. -|.|+|+++.|.+..+.|.. ....+|+.++-......
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~----------- 60 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPK----------- 60 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHH-----------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccc-----------
Confidence 689999999999999999887 78999999999888877664 45677888765553321
Q ss_pred CCCCCcccEEEECChhh
Q psy16898 244 STGGTAVARVIMNLPAT 260 (324)
Q Consensus 244 ~~~~~~fD~Vi~npP~~ 260 (324)
.+|+++.-||..
T Consensus 61 -----~~D~l~ggpPCQ 72 (335)
T PF00145_consen 61 -----DVDLLIGGPPCQ 72 (335)
T ss_dssp -----T-SEEEEE---T
T ss_pred -----cceEEEeccCCc
Confidence 289999999973
No 232
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.36 E-value=0.00076 Score=60.85 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=51.3
Q ss_pred ccCCC--EEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHH---HHHhCCCC----CCCeEEEeccHHHHHHHHH
Q psy16898 160 VREGD--LVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQAS---IRLNERQV----KTPISATQKDARDFLQTDA 230 (324)
Q Consensus 160 ~~~g~--~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N---~~~n~~~l----~~~v~~~~~D~~~~~~~~~ 230 (324)
+++|. +|||+-||-|.=|+.+|..|++|+++|-||-....++.- +..+.. . ..+++++++|+.+++.. .
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~-~~~~~~~ri~l~~~d~~~~L~~-~ 148 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPE-LLAEAMRRIQLIHGDALEYLRQ-P 148 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTT-THHHHHHHEEEEES-CCCHCCC-H
T ss_pred CCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcH-hHHHHHhCCEEEcCCHHHHHhh-c
Confidence 34553 899999999999999998899999999999876665543 333220 1 13799999999998872 1
Q ss_pred HHhhhhhcccCCCCCCCCcccEEEECCh
Q psy16898 231 RAHLVRWSQSEGNSTGGTAVARVIMNLP 258 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~fD~Vi~npP 258 (324)
...||+|.+||=
T Consensus 149 ----------------~~s~DVVY~DPM 160 (234)
T PF04445_consen 149 ----------------DNSFDVVYFDPM 160 (234)
T ss_dssp ----------------SS--SEEEE--S
T ss_pred ----------------CCCCCEEEECCC
Confidence 245999999983
No 233
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.32 E-value=0.00078 Score=60.97 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=67.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
+.+..+|+|+|+|.|.++..+++ .+.+++..|+ |..++.+++ . ++++++.+|.++-+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~----~rv~~~~gd~f~~~----------- 156 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----A----DRVEFVPGDFFDPL----------- 156 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----T----TTEEEEES-TTTCC-----------
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----c----cccccccccHHhhh-----------
Confidence 34667999999999999999998 4679999999 888888877 3 37999999987311
Q ss_pred cccCCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEcc
Q psy16898 238 SQSEGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFL 291 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~ 291 (324)
+. +|+|++. ++..+...|..+.. ++++ +.|.|.+..+.
T Consensus 157 ---------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg------~~g~llI~e~~ 201 (241)
T PF00891_consen 157 ---------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG------KDGRLLIIEMV 201 (241)
T ss_dssp ---------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC------TTEEEEEEEEE
T ss_pred ---------cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCC------CCCeEEEEeec
Confidence 23 8988873 45557778888877 7753 11666666554
No 234
>KOG2361|consensus
Probab=97.31 E-value=0.0003 Score=63.23 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=61.7
Q ss_pred EEEEEcCCCchhHHHHHhc----CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 165 LVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~----g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
++|++|||+|....++.+- +-+|+|+|.||.|++..++|...+- .++.....|+..-- ...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e----~~~~afv~Dlt~~~---~~~-------- 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE----SRVEAFVWDLTSPS---LKE-------- 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch----hhhcccceeccchh---ccC--------
Confidence 7999999999999999982 3589999999999999999887654 23444444433211 000
Q ss_pred CCCCCCCCcccEEEEC------ChhhhHHHHHHHhc-cchh
Q psy16898 241 EGNSTGGTAVARVIMN------LPATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~n------pP~~a~~~l~~~~~-l~~~ 274 (324)
......+|.|+|= +|......++.+.. +||+
T Consensus 139 ---~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 139 ---PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred ---CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 1113458877662 56555556666665 6665
No 235
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.013 Score=51.49 Aligned_cols=148 Identities=19% Similarity=0.177 Sum_probs=93.9
Q ss_pred ecCcChHHHHHHHhh-----ccCCCEEEEEcCCCchhHHHHHh-cC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEE
Q psy16898 145 WNSRLSTEHERVTKE-----VREGDLVLDVFAGVGPFSIPAAR-RG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217 (324)
Q Consensus 145 ~~~r~~~e~~~~~~~-----~~~g~~VLDl~~G~G~~al~~a~-~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~ 217 (324)
||++-+.--..++.- +++|++||=||+.+|+..-+.+. -| ..|+|||.++.....+-.-++.-. |+-.
T Consensus 54 Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-----Ni~P 128 (231)
T COG1889 54 WNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-----NIIP 128 (231)
T ss_pred eCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC-----Ccee
Confidence 777644322234332 45899999999999999999998 34 489999999999888766665432 7889
Q ss_pred EeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhhhHHHHHHHhc-cchhhcCCCCCCCE--EEEEEcc-
Q psy16898 218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PATAVEYVRYLKV-LTREEFGKLSRPPV--LYLYCFL- 291 (324)
Q Consensus 218 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~a~~~l~~~~~-l~~~~~~~~~~~g~--vh~y~f~- 291 (324)
+.+||+.-..-. .+ -...|+|..|- |..+.-+...+.. |+++ |. +.+-.-|
T Consensus 129 IL~DA~~P~~Y~---~~------------Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~--------G~~~i~iKArSI 185 (231)
T COG1889 129 ILEDARKPEKYR---HL------------VEKVDVIYQDVAQPNQAEILADNAEFFLKKG--------GYVVIAIKARSI 185 (231)
T ss_pred eecccCCcHHhh---hh------------cccccEEEEecCCchHHHHHHHHHHHhcccC--------CeEEEEEEeecc
Confidence 999997532211 11 13489999996 5555557777666 5554 53 3333222
Q ss_pred ---cCCChhHHhHhhhcCCCceEEEEeecccCC
Q psy16898 292 ---PKMDLETKKKIKSYDPSYATLIRGIRRLSS 321 (324)
Q Consensus 292 ---~~~~~~~~~~v~~y~~~~~~~i~~~~~~~~ 321 (324)
...+..+.+.+++...+. +.|+++.++.|
T Consensus 186 dvT~dp~~vf~~ev~kL~~~~-f~i~e~~~LeP 217 (231)
T COG1889 186 DVTADPEEVFKDEVEKLEEGG-FEILEVVDLEP 217 (231)
T ss_pred cccCCHHHHHHHHHHHHHhcC-ceeeEEeccCC
Confidence 223344555665544433 45555555544
No 236
>KOG2198|consensus
Probab=97.27 E-value=0.00084 Score=63.85 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=88.2
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhcCC------EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARRGA------IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~g~------~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~ 232 (324)
.+++|++|||+|+..|+-++.+....+ .|+|+|.++.-+..+++-++.-. - .++.+.+.|+..+......+
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~--~-~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP--S-PNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC--C-cceeeecccceecccccccc
Confidence 367999999999999999988777432 89999999999999988775433 2 36677777776654432100
Q ss_pred hhhhhcccCCCCCCCCcccEEEECChhhhH-------HHHHH----Hh--ccchhh-------cCCCCCCCEEEEEEccc
Q psy16898 233 HLVRWSQSEGNSTGGTAVARVIMNLPATAV-------EYVRY----LK--VLTREE-------FGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~-------~~l~~----~~--~l~~~~-------~~~~~~~g~vh~y~f~~ 292 (324)
++......||.|++|-|.+.- .++.. -+ +|...+ +..++.||.+...+|+-
T Consensus 229 ---------~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 229 ---------GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred ---------CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 000123469999999998532 22222 11 122221 34577889888777766
Q ss_pred C--CCh-hHHhHhhhcCCCceEE
Q psy16898 293 K--MDL-ETKKKIKSYDPSYATL 312 (324)
Q Consensus 293 ~--~~~-~~~~~v~~y~~~~~~~ 312 (324)
. +++ -..+.+++.....++.
T Consensus 300 npieNEaVV~~~L~~~~~~~~lv 322 (375)
T KOG2198|consen 300 NPIENEAVVQEALQKVGGAVELV 322 (375)
T ss_pred CchhhHHHHHHHHHHhcCcccce
Confidence 4 222 2233344555444443
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.26 E-value=0.0009 Score=52.51 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=39.5
Q ss_pred EEEcCCCchhHHHHHh---cC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 167 LDVFAGVGPFSIPAAR---RG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 167 LDl~~G~G~~al~~a~---~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
|++|+..|..++.+++ .+ .+++++|..+. .+.++++++..+ +.++++++.+|..+.+.....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~--~~~~~~~~~g~s~~~l~~~~~---------- 67 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG--LSDRVEFIQGDSPDFLPSLPD---------- 67 (106)
T ss_dssp --------------------------EEEESS-------------GG--G-BTEEEEES-THHHHHHHHH----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC--CCCeEEEEEcCcHHHHHHcCC----------
Confidence 5789999998888776 22 27999999996 444555555555 666899999999998776541
Q ss_pred CCCCCCCcccEEEECChhh---hHHHHHHHhc-cchhhcCCCCCCCEEEEEE
Q psy16898 242 GNSTGGTAVARVIMNLPAT---AVEYVRYLKV-LTREEFGKLSRPPVLYLYC 289 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~---a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~ 289 (324)
..+|.+++|-+.. ....+..+.. +++ +|++.++.
T Consensus 68 ------~~~dli~iDg~H~~~~~~~dl~~~~~~l~~--------ggviv~dD 105 (106)
T PF13578_consen 68 ------GPIDLIFIDGDHSYEAVLRDLENALPRLAP--------GGVIVFDD 105 (106)
T ss_dssp --------EEEEEEES---HHHHHHHHHHHGGGEEE--------EEEEEEE-
T ss_pred ------CCEEEEEECCCCCHHHHHHHHHHHHHHcCC--------CeEEEEeC
Confidence 3499999997643 2333333333 554 37776653
No 238
>KOG2899|consensus
Probab=97.23 E-value=0.00049 Score=61.87 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=45.4
Q ss_pred HHHHHHh-hccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHH
Q psy16898 152 EHERVTK-EVREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 152 e~~~~~~-~~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~ 206 (324)
.|.+.++ ....+..+||+||..|.+++.+|+. |+ .|+|+||++..++.|++|++.
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 4444443 2346778999999999999999994 55 899999999999999999874
No 239
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.22 E-value=0.0046 Score=55.22 Aligned_cols=106 Identities=19% Similarity=0.086 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
+.+++|+|+|.|-=|+++|- ...+|+-+|.+..-+..+++-.+.-+ ++ |++++++.+.++..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~--L~-nv~i~~~RaE~~~~~~----------- 133 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG--LE-NVEIVHGRAEEFGQEK----------- 133 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC--CC-CeEEehhhHhhccccc-----------
Confidence 68999999999999999774 45579999999999999999888888 87 8999999999875531
Q ss_pred CCCCCCCCcccEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898 241 EGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDL 296 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~~~ 296 (324)
..||+|++--=+.--.+.+-... .++.+|.+..|-+....+.
T Consensus 134 -------~~~D~vtsRAva~L~~l~e~~~p-------llk~~g~~~~~k~~~~~~e 175 (215)
T COG0357 134 -------KQYDVVTSRAVASLNVLLELCLP-------LLKVGGGFLAYKGLAGKDE 175 (215)
T ss_pred -------ccCcEEEeehccchHHHHHHHHH-------hcccCCcchhhhHHhhhhh
Confidence 11899987322211122222222 2334577777777665443
No 240
>KOG1501|consensus
Probab=97.10 E-value=0.00081 Score=65.08 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=50.2
Q ss_pred EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec
Q psy16898 165 LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~ 220 (324)
.|||+|+|||.+++.+++.|+ .|+|+|.-..|...|++-...|+ .+++|.+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng--~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNG--MSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCC--Cccceeeecc
Confidence 589999999999999999988 99999999999999999999999 8888887764
No 241
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.08 E-value=0.0009 Score=63.35 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=52.5
Q ss_pred EEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCC
Q psy16898 166 VLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNS 244 (324)
Q Consensus 166 VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
|+|||||.|++++-+.+.|. -|.++|+++.|.+..+.|.. . .++++|+.++.....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~--------~-~~~~~Di~~~~~~~~-------------- 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG--------N-KVPFGDITKISPSDI-------------- 57 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC--------C-CCCccChhhhhhhhC--------------
Confidence 68999999999999988888 46789999999998887642 1 345678887643211
Q ss_pred CCCCcccEEEECChhh
Q psy16898 245 TGGTAVARVIMNLPAT 260 (324)
Q Consensus 245 ~~~~~fD~Vi~npP~~ 260 (324)
..+|+++.-||..
T Consensus 58 ---~~~dvl~gg~PCq 70 (315)
T TIGR00675 58 ---PDFDILLGGFPCQ 70 (315)
T ss_pred ---CCcCEEEecCCCc
Confidence 2378898888863
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0028 Score=57.03 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=62.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCe-EEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPI-SATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v-~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+|.++||+|+-||+|+..+.++|| +|+|+|.....+.+-- + +. .++ .+-..|++.+-.+...
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kL---R-~d----~rV~~~E~tN~r~l~~~~~~------- 142 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKL---R-ND----PRVIVLERTNVRYLTPEDFT------- 142 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhH---h-cC----CcEEEEecCChhhCCHHHcc-------
Confidence 3899999999999999999999988 9999999887666532 1 12 134 3444566655444321
Q ss_pred ccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cch
Q psy16898 239 QSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTR 273 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~ 273 (324)
...|.+++|.-..+. ..++.+.. +++
T Consensus 143 ---------~~~d~~v~DvSFISL~~iLp~l~~l~~~ 170 (245)
T COG1189 143 ---------EKPDLIVIDVSFISLKLILPALLLLLKD 170 (245)
T ss_pred ---------cCCCeEEEEeehhhHHHHHHHHHHhcCC
Confidence 248999999876543 35666665 444
No 243
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.00 E-value=0.0028 Score=56.01 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=82.7
Q ss_pred hccCCCE-EEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 159 EVREGDL-VLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 159 ~~~~g~~-VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
.+.+... ||+++||||..+.++|+. ...-.--|.++......+..+...+ +++-...+..|+.+-.-....
T Consensus 21 ~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~--~~Nv~~P~~lDv~~~~w~~~~---- 94 (204)
T PF06080_consen 21 YLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG--LPNVRPPLALDVSAPPWPWEL---- 94 (204)
T ss_pred HhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC--CcccCCCeEeecCCCCCcccc----
Confidence 3555554 999999999999999984 4577788999999888888777766 653233455565432111000
Q ss_pred hhcccCCCCCCCCcccEEEE-CC-----hhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEE-------cccCCChhHHhH
Q psy16898 236 RWSQSEGNSTGGTAVARVIM-NL-----PATAVEYVRYLKV-LTREEFGKLSRPPVLYLYC-------FLPKMDLETKKK 301 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~-np-----P~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~-------f~~~~~~~~~~~ 301 (324)
. .......||.|++ |. ...+..++..+.. |++ +|.+.+|. |+..++..++..
T Consensus 95 ----~--~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~--------gG~L~~YGPF~~~G~~ts~SN~~FD~s 160 (204)
T PF06080_consen 95 ----P--APLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKP--------GGLLFLYGPFNRDGKFTSESNAAFDAS 160 (204)
T ss_pred ----c--cccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCC--------CCEEEEeCCcccCCEeCCcHHHHHHHH
Confidence 0 0001245998866 43 2223334444433 544 58999883 344566778888
Q ss_pred hhhcCCCce
Q psy16898 302 IKSYDPSYA 310 (324)
Q Consensus 302 v~~y~~~~~ 310 (324)
.+.-+|++.
T Consensus 161 Lr~rdp~~G 169 (204)
T PF06080_consen 161 LRSRDPEWG 169 (204)
T ss_pred HhcCCCCcC
Confidence 888888765
No 244
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.99 E-value=0.0027 Score=59.73 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=71.8
Q ss_pred cChHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 148 r~~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
-+..|....+. ..++..++|.--|.|+.+..++++ +++|+|+|.++.|++.|++++... .+++.+++++..++
T Consensus 7 Vll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 7 VLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNL 81 (310)
T ss_dssp TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGH
T ss_pred ccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHH
Confidence 34444433333 457889999999999999999974 579999999999999998877633 35899999998877
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898 226 LQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKV 270 (324)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~ 270 (324)
........ ....+|.|++|+=-++.++-+.-++
T Consensus 82 ~~~l~~~~------------~~~~~dgiL~DLGvSS~Qld~~~RG 114 (310)
T PF01795_consen 82 DEYLKELN------------GINKVDGILFDLGVSSMQLDDPERG 114 (310)
T ss_dssp HHHHHHTT------------TTS-EEEEEEE-S--HHHHHTGGGS
T ss_pred HHHHHHcc------------CCCccCEEEEccccCHHHhCCCCCC
Confidence 65543320 1245999999998877777777777
No 245
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.99 E-value=0.012 Score=55.74 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=70.1
Q ss_pred HHhhccCCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHH
Q psy16898 156 VTKEVREGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQT 228 (324)
Q Consensus 156 ~~~~~~~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~ 228 (324)
+++.+.++..++|+|||.|.-+..+.+ +....+++|+|.++++.+..++.... ++. .+.-+++|..+.+..
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~--~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN--FSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--CCCeEEEEEEecHHHHHhh
Confidence 555677888999999999998655443 24589999999999999999998433 441 245589998776543
Q ss_pred HHHHhhhhhcccCCCCCCCCcccEEEE------C-ChhhhHHHHHHHhc--cchh
Q psy16898 229 DARAHLVRWSQSEGNSTGGTAVARVIM------N-LPATAVEYVRYLKV--LTRE 274 (324)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~fD~Vi~------n-pP~~a~~~l~~~~~--l~~~ 274 (324)
..... .......++. | .|..+..||..++. +.++
T Consensus 148 l~~~~------------~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 148 LKRPE------------NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred ccccc------------ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 21100 0112333332 4 46668889998865 5554
No 246
>PRK00536 speE spermidine synthase; Provisional
Probab=96.90 E-value=0.011 Score=54.58 Aligned_cols=102 Identities=12% Similarity=-0.063 Sum_probs=69.5
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCC-CCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK-TPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+..++||=+|.|-|+.+.+++|...+|+.||+++..++.+++-+-.....++ .+++++. +..+..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-----~~~~~~--------- 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-----QLLDLD--------- 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-----hhhhcc---------
Confidence 4568999999999999999999756999999999999999983322110032 3777775 111110
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
...||+||+|... ..+|.+.++. |+++ |++.+-+=++
T Consensus 137 -------~~~fDVIIvDs~~-~~~fy~~~~~~L~~~--------Gi~v~Qs~sp 174 (262)
T PRK00536 137 -------IKKYDLIICLQEP-DIHKIDGLKRMLKED--------GVFISVAKHP 174 (262)
T ss_pred -------CCcCCEEEEcCCC-ChHHHHHHHHhcCCC--------cEEEECCCCc
Confidence 1359999999432 2567766665 7765 6665544333
No 247
>KOG1975|consensus
Probab=96.86 E-value=0.0028 Score=59.34 Aligned_cols=66 Identities=18% Similarity=0.050 Sum_probs=53.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCC----CeEEEeccHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKT----PISATQKDARDFL 226 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~----~v~~~~~D~~~~~ 226 (324)
.++++.++|||||-|+=.+-.-+.|. .++|+||.+-+++.|++..+.-.. ... .+.|+++|.....
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~-r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKN-RFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHh-hhhcccceeEEEEeccchhH
Confidence 46889999999999999998888777 999999999999999987764321 111 3789999987653
No 248
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0026 Score=60.60 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=57.8
Q ss_pred CEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCC
Q psy16898 164 DLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEG 242 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~ 242 (324)
-+++|||||.|++.+-+...|. -+.++|+++.|++..+.|... -.+...|+.++..+....
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~---------- 65 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRK---------- 65 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccc----------
Confidence 4799999999999999999887 788999999999988766542 345667877765543221
Q ss_pred CCCCCCcccEEEECChhhh
Q psy16898 243 NSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 243 ~~~~~~~fD~Vi~npP~~a 261 (324)
..+|+++.-||.-+
T Consensus 66 -----~~~DvligGpPCQ~ 79 (328)
T COG0270 66 -----SDVDVLIGGPPCQD 79 (328)
T ss_pred -----cCCCEEEeCCCCcc
Confidence 14899999999843
No 249
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.75 E-value=0.0028 Score=56.10 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=41.0
Q ss_pred cCcChHHHH-HHHhhcc--CCCEEEEEcCCCchhHHHHHh--cC--CEEEEEeCCHHHHHHHHHHHHHh
Q psy16898 146 NSRLSTEHE-RVTKEVR--EGDLVLDVFAGVGPFSIPAAR--RG--AIVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 146 ~~r~~~e~~-~~~~~~~--~g~~VLDl~~G~G~~al~~a~--~g--~~V~avD~~~~a~~~a~~N~~~n 207 (324)
--|+..|-. |.+..+. ..-++.|.|||.|++.--++- +. ..|+|-|+++++++.|++|+.+-
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhc
Confidence 335555543 2333332 233899999999998655543 32 38999999999999999999753
No 250
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.75 E-value=0.0021 Score=63.99 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=45.2
Q ss_pred CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.-+++|||||.|++++.+-..|. -|.++|+++.|.+..+.|.... + ....+++|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~----p-~~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD----P-ATHRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC----C-ccceeccChhhC
Confidence 34899999999999999988887 7789999999999888875311 1 244566777765
No 251
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.67 E-value=0.0074 Score=51.29 Aligned_cols=81 Identities=15% Similarity=0.099 Sum_probs=53.6
Q ss_pred EEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEEC-----ChhhhH
Q psy16898 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMN-----LPATAV 262 (324)
Q Consensus 188 ~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n-----pP~~a~ 262 (324)
+|+|+|+.|++.|+++.+..+.....+++++.+|+.++... ...||.|++. .|+ ..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~------------------~~~fD~v~~~~~l~~~~d-~~ 61 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD------------------DCEFDAVTMGYGLRNVVD-RL 61 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC------------------CCCeeEEEecchhhcCCC-HH
Confidence 48999999999998776532200123799999999875322 2359999885 232 22
Q ss_pred HHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCC
Q psy16898 263 EYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMD 295 (324)
Q Consensus 263 ~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~ 295 (324)
.++..+.. |++ ||.+.+..|.+...
T Consensus 62 ~~l~ei~rvLkp--------GG~l~i~d~~~~~~ 87 (160)
T PLN02232 62 RAMKEMYRVLKP--------GSRVSILDFNKSNQ 87 (160)
T ss_pred HHHHHHHHHcCc--------CeEEEEEECCCCCh
Confidence 34444443 555 59999988887543
No 252
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.61 E-value=0.012 Score=53.69 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
...++||+|+|-|..+..++..-.+|+|-|.|+.|...+++ -| .+++ |+.++...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg------~~vl--~~~~w~~~------------- 148 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG------FTVL--DIDDWQQT------------- 148 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC------CeEE--ehhhhhcc-------------
Confidence 45689999999999999999877799999999998666543 33 3333 33333211
Q ss_pred CCCCCCCcccEEEE-CC---hhhhHHHHHHHhc-cchh
Q psy16898 242 GNSTGGTAVARVIM-NL---PATAVEYVRYLKV-LTRE 274 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~-np---P~~a~~~l~~~~~-l~~~ 274 (324)
+.+||+|.+ |+ .+.+..+|..++. +++.
T Consensus 149 -----~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 149 -----DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred -----CCceEEEeehhhhhccCCHHHHHHHHHHHhCCC
Confidence 235999965 44 3346678888877 7775
No 253
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.58 E-value=0.0088 Score=53.30 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=66.7
Q ss_pred CCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccC
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSE 241 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 241 (324)
..+.||+|||+|.++-.+..+-+ +|-.||.++..++.|++.+...+ ....++++.-..+|.+..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~---~~v~~~~~~gLQ~f~P~~------------ 120 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN---PRVGEFYCVGLQDFTPEE------------ 120 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG---CCEEEEEES-GGG----T------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC---CCcceEEecCHhhccCCC------------
Confidence 45899999999999987766545 99999999999999998765422 124678888888886541
Q ss_pred CCCCCCCcccEEEEC-----Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEccc
Q psy16898 242 GNSTGGTAVARVIMN-----LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~n-----pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
.+||+|-+- +.+. -++||...+. |+++ |+|.+-.-..
T Consensus 121 ------~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~--------G~IvvKEN~~ 164 (218)
T PF05891_consen 121 ------GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPN--------GVIVVKENVS 164 (218)
T ss_dssp ------T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEE--------EEEEEEEEEE
T ss_pred ------CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCC--------cEEEEEecCC
Confidence 359999874 4442 3467777766 7775 7777664433
No 254
>KOG4058|consensus
Probab=96.44 E-value=0.013 Score=48.98 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=56.0
Q ss_pred HHhhcc--CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 156 VTKEVR--EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 156 ~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++.+. +..+.+|+|+|-|.+-+.+++.|. ..+|+|+||..+.+++-.+-+.+ +.....|...|...+
T Consensus 64 VLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 64 VLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhhc
Confidence 444443 445899999999999999999986 89999999999999999988888 776777777776654
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.42 E-value=0.025 Score=52.73 Aligned_cols=85 Identities=11% Similarity=0.145 Sum_probs=66.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+.++...+|.--|-|+.|-.+..+. ++++|+|.+|.|++.|++.+..++ ++++++++...++........
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~----~r~~~v~~~F~~l~~~l~~~~--- 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD----GRVTLVHGNFANLAEALKELG--- 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC----CcEEEEeCcHHHHHHHHHhcC---
Confidence 4577899999999999999999853 589999999999999999998765 589999999887765543211
Q ss_pred hcccCCCCCCCCcccEEEECChhhh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
...+|-|++|+=-++
T Consensus 94 ----------i~~vDGiL~DLGVSS 108 (314)
T COG0275 94 ----------IGKVDGILLDLGVSS 108 (314)
T ss_pred ----------CCceeEEEEeccCCc
Confidence 234788887754433
No 256
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.41 E-value=0.016 Score=53.34 Aligned_cols=86 Identities=21% Similarity=0.208 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.|+.|+-+| ---.+|+++|-.| .+|.-+|+++..++...+-++.-+ +. |++.+.-|.++-+++...
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g--~~-~ie~~~~Dlr~plpe~~~-------- 219 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG--YN-NIEAFVFDLRNPLPEDLK-------- 219 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC--cc-chhheeehhcccChHHHH--------
Confidence 467788888 6667778877754 499999999999999999999888 76 799999999987776554
Q ss_pred cCCCCCCCCcccEEEECChhhhHHHHHHH
Q psy16898 240 SEGNSTGGTAVARVIMNLPATAVEYVRYL 268 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~~a~~~l~~~ 268 (324)
.+||+++.|||.. ..-+.+|
T Consensus 220 --------~kFDvfiTDPpeT-i~alk~F 239 (354)
T COG1568 220 --------RKFDVFITDPPET-IKALKLF 239 (354)
T ss_pred --------hhCCeeecCchhh-HHHHHHH
Confidence 3599999999993 3334444
No 257
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.33 E-value=0.019 Score=53.29 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCchhHHHHHhc--C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARR--G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~--g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.-+|||+.||.|..-+-+... . ..|.-.|.|+..++..++-++.+| +.+-++|.++||++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDR 200 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCH
Confidence 348999999999998888763 2 489999999999999999999999 986669999999985
No 258
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.32 E-value=0.038 Score=46.02 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC---hhh--
Q psy16898 186 IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL---PAT-- 260 (324)
Q Consensus 186 ~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np---P~~-- 260 (324)
+|+|+|+.++|++..++.++.++ +.+++++++..-..+...... ..+|.++.|+ |.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~----------------~~v~~~iFNLGYLPggDk 62 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPE----------------GPVDAAIFNLGYLPGGDK 62 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S------------------EEEEEEEESB-CTS-T
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCcc----------------CCcCEEEEECCcCCCCCC
Confidence 69999999999999999999998 877899998876654332210 2489999993 543
Q ss_pred --------hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccCCCh
Q psy16898 261 --------AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPKMDL 296 (324)
Q Consensus 261 --------a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~~~~ 296 (324)
.+..++++.. |+++ |++-+-++...+..
T Consensus 63 ~i~T~~~TTl~Al~~al~lL~~g--------G~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 63 SITTKPETTLKALEAALELLKPG--------GIITIVVYPGHPGG 99 (140)
T ss_dssp TSB--HHHHHHHHHHHHHHEEEE--------EEEEEEE--STCHH
T ss_pred CCCcCcHHHHHHHHHHHHhhccC--------CEEEEEEeCCCCCC
Confidence 2344444444 5554 88777777665543
No 259
>KOG4589|consensus
Probab=95.80 E-value=0.077 Score=46.24 Aligned_cols=119 Identities=19% Similarity=0.136 Sum_probs=73.3
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEec-cHHHHHHHH-HHHhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK-DARDFLQTD-ARAHL 234 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~-D~~~~~~~~-~~~~~ 234 (324)
+.++++|||+||..|.++.-+.++ ...|.|||+-+- .. +. .+.++++ |+.+-.... ..+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p--~~-Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EP--PE-GATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cC--CC-CcccccccccCCHHHHHHHHHhC
Confidence 568999999999999999998885 348999998651 11 22 4666666 665532211 11111
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhh--HHHHHHHhc--cch----hhcCCCCCCCEEEEEEcccCCChhHHhHhh
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATA--VEYVRYLKV--LTR----EEFGKLSRPPVLYLYCFLPKMDLETKKKIK 303 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a--~~~l~~~~~--l~~----~~~~~~~~~g~vh~y~f~~~~~~~~~~~v~ 303 (324)
+....|+|++|.-..+ ...++..+- |=. -.+....++|.+.|-.....++..++....
T Consensus 133 -----------p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~ 198 (232)
T KOG4589|consen 133 -----------PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQ 198 (232)
T ss_pred -----------CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHH
Confidence 1356999999964322 112222211 000 001223477999999999998887776653
No 260
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.56 E-value=0.024 Score=57.17 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCCchhHHHHHh---cC---CEEEEEeCCHHHHHHHHHHHHHhCCCCCC-CeEEEeccHHHHHHHHHHHhh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR---RG---AIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~---~g---~~V~avD~~~~a~~~a~~N~~~n~~~l~~-~v~~~~~D~~~~~~~~~~~~~ 234 (324)
++..+.|++||+|.+-+...+ .| ..+++.|.++.++..++.|+..++ +.+ ......+|...-....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~--~~~~t~~~~~~dtl~~~d~~----- 289 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN--IDYANFNIINADTLTTKEWE----- 289 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC--CCccccCcccCCcCCCcccc-----
Confidence 567899999999999887654 12 269999999999999999998877 532 2233334432110000
Q ss_pred hhhcccCCCCCCCCcccEEEECChhhh
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMNLPATA 261 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~npP~~a 261 (324)
....||.|++|||...
T Consensus 290 -----------~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 290 -----------NENGFEVVVSNPPYSI 305 (501)
T ss_pred -----------ccccCCEEeecCCccc
Confidence 0134999999999853
No 261
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.49 E-value=0.047 Score=50.62 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchhHHHH-Hhc---CCEEEEEeCCHHHHHHHHHHHH-HhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 164 DLVLDVFAGVGPFSIPA-ARR---GAIVAANDLNPDSYAWLQASIR-LNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~-a~~---g~~V~avD~~~~a~~~a~~N~~-~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+|+=+|||.=+++... ++. ++.|+++|+++.|++.+++=++ ..+ +..+++|+++|+.+...+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~~~m~f~~~d~~~~~~dl--------- 190 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LSKRMSFITADVLDVTYDL--------- 190 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H-SSEEEEES-GGGG-GG----------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--ccCCeEEEecchhcccccc---------
Confidence 59999999988887544 442 4689999999999999988766 445 6668999999998765442
Q ss_pred ccCCCCCCCCcccEEEECChhh-----hHHHHHHHhc-cchh
Q psy16898 239 QSEGNSTGGTAVARVIMNLPAT-----AVEYVRYLKV-LTRE 274 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~-----a~~~l~~~~~-l~~~ 274 (324)
..||+|++----. -.+.+..+.. ++++
T Consensus 191 ---------~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 191 ---------KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp ------------SEEEE-TT-S----SHHHHHHHHHHHS-TT
T ss_pred ---------ccCCEEEEhhhcccccchHHHHHHHHHhhCCCC
Confidence 2399997753222 2346666655 5554
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.48 E-value=0.014 Score=52.33 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHHHH-HHHHHHhhhhh
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARDFL-QTDARAHLVRW 237 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~~~-~~~~~~~~~~~ 237 (324)
++-+.||+|.|.-.+==.+.. .|.+.+|-|+++.+++.|+.++..| + +...+++....-.+.+ .....
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~--l~~~I~lr~qk~~~~if~giig------ 149 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPG--LERAIRLRRQKDSDAIFNGIIG------ 149 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcc--hhhheeEEeccCcccccccccc------
Confidence 556889998775544222222 4779999999999999999999999 5 7655666544322221 11110
Q ss_pred cccCCCCCCCCcccEEEECChhh
Q psy16898 238 SQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..++||..++|||..
T Consensus 150 --------~nE~yd~tlCNPPFh 164 (292)
T COG3129 150 --------KNERYDATLCNPPFH 164 (292)
T ss_pred --------ccceeeeEecCCCcc
Confidence 136799999999984
No 263
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=95.37 E-value=0.021 Score=51.97 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=34.1
Q ss_pred HHHhhcc--CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHH
Q psy16898 155 RVTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 155 ~~~~~~~--~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~ 201 (324)
.+.+.++ +..+++|+|||+|.+++.+...+..|+.+|+++..+...+
T Consensus 11 ~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 11 WIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp HHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 3555666 5889999999999999999888889999999998877665
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.14 E-value=0.061 Score=48.96 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=44.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+....+|+|+|||.=+++++.... ++.++|.|++..+++.+..=+..-+ .. .++...|...
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~--~~~~v~Dl~~ 165 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VP--HDARVRDLLS 165 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---C--EEEEEE-TTT
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CC--cceeEeeeec
Confidence 445789999999999999988763 5699999999999999998887776 54 5555556543
No 265
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.08 E-value=0.068 Score=49.55 Aligned_cols=49 Identities=29% Similarity=0.371 Sum_probs=44.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
-.+|+.|||.|+|+|+.++.+.+.|...+++|+++..++.+.+.+....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 4589999999999999999999999999999999999999998887654
No 266
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=94.84 E-value=0.038 Score=51.62 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=32.1
Q ss_pred CEEEEEcCCCc----hhHHHHHhc------CCEEEEEeCCHHHHHHHHHH
Q psy16898 164 DLVLDVFAGVG----PFSIPAARR------GAIVAANDLNPDSYAWLQAS 203 (324)
Q Consensus 164 ~~VLDl~~G~G----~~al~~a~~------g~~V~avD~~~~a~~~a~~N 203 (324)
-+|+..||.|| ++|+.+... ..+|+|.|+|+.+++.|++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 49999999999 455555542 24899999999999999875
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.76 E-value=0.34 Score=46.28 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=36.8
Q ss_pred hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
.+.+|++|+=.|+| .|.+++.+|+ .|++|+++|.|++-.+.|++
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 36689998888776 6677888888 78999999999999988865
No 268
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=94.45 E-value=0.032 Score=57.83 Aligned_cols=50 Identities=38% Similarity=0.543 Sum_probs=44.4
Q ss_pred hhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh
Q psy16898 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n 207 (324)
+....+..++|.|+|-|++.+.+++.|+.|+|+|+||.|+-.+|+-+..-
T Consensus 86 ~~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyP 135 (875)
T COG1743 86 ETPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYP 135 (875)
T ss_pred cCcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcc
Confidence 33446779999999999999999999999999999999999999887654
No 269
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=93.84 E-value=0.11 Score=48.19 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh--cC-CEEEEEeCCHHHHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR--RG-AIVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~--~g-~~V~avD~~~~a~~~a~~N~~ 205 (324)
...+|||+|||+|+-...+.. +. .+++++|.|+.|++.++.=+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 346899999999986665554 33 389999999999998877544
No 270
>KOG1596|consensus
Probab=93.79 E-value=0.25 Score=44.75 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=56.5
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhc-C--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARR-G--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~-g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+++|.+||=||++.|+---+.+.- | .-|+|||.|+.+=..+..-++ + ..|+-.+..||+.--+.-. +
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--k---RtNiiPIiEDArhP~KYRm---l-- 223 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--K---RTNIIPIIEDARHPAKYRM---L-- 223 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--c---cCCceeeeccCCCchheee---e--
Confidence 679999999999999998888872 2 379999999987666543332 1 2378888889875322110 0
Q ss_pred hcccCCCCCCCCcccEEEECChh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~ 259 (324)
-...|+|+.|.|.
T Consensus 224 ----------VgmVDvIFaDvaq 236 (317)
T KOG1596|consen 224 ----------VGMVDVIFADVAQ 236 (317)
T ss_pred ----------eeeEEEEeccCCC
Confidence 1248999998654
No 271
>KOG1269|consensus
Probab=93.41 E-value=0.083 Score=51.00 Aligned_cols=107 Identities=20% Similarity=0.127 Sum_probs=70.2
Q ss_pred hccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhh
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRW 237 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 237 (324)
...++..++|++||.|..+..++. +++.+++++.|+.-+..+..-..... ++++..++.+|...-+.+.
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~--l~~k~~~~~~~~~~~~fed-------- 176 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY--LDNKCNFVVADFGKMPFED-------- 176 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH--hhhhcceehhhhhcCCCCc--------
Confidence 456788999999999999999998 56799999999987777665554444 5544444555554432221
Q ss_pred cccCCCCCCCCcccEE-----EECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEcccC
Q psy16898 238 SQSEGNSTGGTAVARV-----IMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPK 293 (324)
Q Consensus 238 ~~~~~~~~~~~~fD~V-----i~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~ 293 (324)
..||.+ +.-.|....-+-+.++.+++ ||.+-+|.+.+.
T Consensus 177 ----------n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kp--------GG~~i~~e~i~~ 219 (364)
T KOG1269|consen 177 ----------NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKP--------GGLFIVKEWIKT 219 (364)
T ss_pred ----------cccCcEEEEeecccCCcHHHHHHHHhcccCC--------CceEEeHHHHHh
Confidence 236655 23355544445555554555 477777777664
No 272
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.26 E-value=0.26 Score=38.61 Aligned_cols=55 Identities=33% Similarity=0.389 Sum_probs=38.3
Q ss_pred EEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 166 VLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 166 VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++|++||+|... .++. .+..++++|.++.++..++....... .. .+.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAG--LG-LVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcC--CC-ceEEEEecccc
Confidence 999999999976 3333 23589999999999998655544322 21 15777777665
No 273
>KOG1709|consensus
Probab=93.06 E-value=1.4 Score=39.54 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=70.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+|.+||.+|-|.|.+.-.+-.+. .+=+-+|.+|+.++.++++.=... +||.++.+--.+.+..+..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek----~nViil~g~WeDvl~~L~d-------- 167 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK----ENVIILEGRWEDVLNTLPD-------- 167 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc----cceEEEecchHhhhccccc--------
Confidence 589999999999999988776643 366679999999999988775544 5899999988887776543
Q ss_pred cCCCCCCCCcccEEEECCh--hh--hHHHHHHHhc-cchh
Q psy16898 240 SEGNSTGGTAVARVIMNLP--AT--AVEYVRYLKV-LTRE 274 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP--~~--a~~~l~~~~~-l~~~ 274 (324)
..||-|.-|-= .. ..+|-+.+.+ |||+
T Consensus 168 --------~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 168 --------KHFDGIYYDTYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred --------cCcceeEeechhhHHHHHHHHHHHHhhhcCCC
Confidence 35999999853 21 2345565555 5654
No 274
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.92 E-value=0.21 Score=41.52 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=32.6
Q ss_pred EEcCCCc--hhHHHHH--h--cCCEEEEEeCCHHHHHHHHHH--HHHhCCCCCCCeEEEe
Q psy16898 168 DVFAGVG--PFSIPAA--R--RGAIVAANDLNPDSYAWLQAS--IRLNERQVKTPISATQ 219 (324)
Q Consensus 168 Dl~~G~G--~~al~~a--~--~g~~V~avD~~~~a~~~a~~N--~~~n~~~l~~~v~~~~ 219 (324)
|+||+.| .....++ . .+.+|+++|.+|..++.+++| +..|. ..+.++++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~--~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALND--KDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTT--TSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcC--CCceEEEEE
Confidence 8999999 6655553 2 356999999999999999999 88875 333344443
No 275
>KOG2352|consensus
Probab=92.91 E-value=0.24 Score=49.02 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCchhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
.+..+|-+|=|.|.+...+.. ....++|||+.|.+++.|..+...-. - .+..+.-.|+.+++.+..+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q--~-~r~~V~i~dGl~~~~~~~k~------- 364 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ--S-DRNKVHIADGLDFLQRTAKS------- 364 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh--h-hhhhhhHhhchHHHHHHhhc-------
Confidence 355677777777888766654 34699999999999999999886544 1 14566677888888776541
Q ss_pred cCCCCCCCCcccEEEEC------------Chhh-hHHHHHHHhc-cchhhcCCCCCCCEEEEEEcccC--CChhHHhHhh
Q psy16898 240 SEGNSTGGTAVARVIMN------------LPAT-AVEYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK--MDLETKKKIK 303 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~n------------pP~~-a~~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~--~~~~~~~~v~ 303 (324)
.....+||+++.| ||.+ +..++...+. +.+. |++-+....+. -.++...-++
T Consensus 365 ----~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~--------g~f~inlv~r~~~~~~~~~~~l~ 432 (482)
T KOG2352|consen 365 ----QQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPR--------GMFIINLVTRNSSFKDEVLMNLA 432 (482)
T ss_pred ----cccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCcc--------ceEEEEEecCCcchhHHHHHhhh
Confidence 1124679999886 2332 4456766666 5554 55555544444 3455555566
Q ss_pred hcCCCce
Q psy16898 304 SYDPSYA 310 (324)
Q Consensus 304 ~y~~~~~ 310 (324)
.+.|...
T Consensus 433 ~vf~~l~ 439 (482)
T KOG2352|consen 433 KVFPQLY 439 (482)
T ss_pred hhhHHHh
Confidence 6665544
No 276
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=92.65 E-value=0.2 Score=45.70 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=50.9
Q ss_pred HHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhh
Q psy16898 156 VTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLV 235 (324)
Q Consensus 156 ~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~ 235 (324)
+++.+.++.. +..|.|+=.++..+.+..-+.+.+|+.|...+.+++|+.... ++.+.+.|+.+.+......
T Consensus 52 ~v~~~n~~~~-l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~~-----~v~v~~~DG~~~l~allPP--- 122 (245)
T PF04378_consen 52 AVRALNPDGE-LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRDR-----RVRVHHRDGYEGLKALLPP--- 122 (245)
T ss_dssp HHHHHSSSSS---EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TTS------EEEE-S-HHHHHHHH-S----
T ss_pred HHHHhccCCC-cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccCC-----ccEEEeCchhhhhhhhCCC---
Confidence 3344444333 788999988998888887799999999999999998887433 7999999999988775431
Q ss_pred hhcccCCCCCCCCcccEEEECChhh
Q psy16898 236 RWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 236 ~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
..+--.|++|||+-
T Consensus 123 -----------~~rRglVLIDPpYE 136 (245)
T PF04378_consen 123 -----------PERRGLVLIDPPYE 136 (245)
T ss_dssp -----------TTS-EEEEE-----
T ss_pred -----------CCCCeEEEECCCCC
Confidence 23467999999984
No 277
>KOG2940|consensus
Probab=92.02 E-value=0.14 Score=46.16 Aligned_cols=57 Identities=12% Similarity=0.026 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDAR 223 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~ 223 (324)
....++|+|||.|.++-++...|. +++-+|.|-.|++.++. ++.++ +. +....+|-.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~-~qdp~--i~--~~~~v~DEE 129 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRD-AQDPS--IE--TSYFVGDEE 129 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhc-cCCCc--eE--EEEEecchh
Confidence 456899999999999999998877 99999999999998764 22244 43 556666643
No 278
>KOG2912|consensus
Probab=92.01 E-value=0.16 Score=47.72 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=56.0
Q ss_pred EEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHH-HHHHHHhhhhhcccC
Q psy16898 167 LDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL-QTDARAHLVRWSQSE 241 (324)
Q Consensus 167 LDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~-~~~~~~~~~~~~~~~ 241 (324)
+|+|.|+-. ++.+. .+...+|.|++...+..|+.|+..|+ +.+.+.++.......+ .+...+
T Consensus 107 iDIgtgasc--i~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~--lss~ikvV~~~~~ktll~d~~~~--------- 173 (419)
T KOG2912|consen 107 IDIGTGASC--IYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN--LSSLIKVVKVEPQKTLLMDALKE--------- 173 (419)
T ss_pred eeccCchhh--hHHhhhchhccceeeeeeccccccchhhccccccc--cccceeeEEecchhhcchhhhcc---------
Confidence 677666544 44433 35689999999999999999999999 8888888887654332 221111
Q ss_pred CCCCCCCcccEEEECChhhhH
Q psy16898 242 GNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 242 ~~~~~~~~fD~Vi~npP~~a~ 262 (324)
.....||...+|||.+..
T Consensus 174 ---~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 174 ---ESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred ---CccceeeEEecCCchhhc
Confidence 012349999999998643
No 279
>KOG2078|consensus
Probab=91.99 E-value=0.025 Score=54.91 Aligned_cols=191 Identities=25% Similarity=0.189 Sum_probs=117.5
Q ss_pred cCCCChhHHHHHHhcccc--cCCceeEEEEeeccCCChHHHHHhccCCC-CCCceeEEECCEEEEEeCchhhhhHHHHHH
Q psy16898 12 FEDFGEFNVKVLENAKLT--AKDFTHAEVLLTYDNFSAEDILKAILPDN-VAMSSFTSVGHIVHCNLREELIEHKFIIGR 88 (324)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~y~~~~~~~~l~~~~p~~-~~~~~~d~~G~i~vi~~~~~~~~~~~~I~~ 88 (324)
.=+.++-+.+...+.|-- ...+.-..+...|.+|..-+.|+..++-+ -.+++++.+|..+...++.+..+++++|++
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~e~~~~~~~I~~ 325 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQEPLPYKRLIAD 325 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhcCCchhhhHHHH
Confidence 334455555555443321 01122355788999999999999999888 567779999999999999888899999999
Q ss_pred HHHhhC-CCceEEEEcCCCCCcccccceeeEEccCCCeEEEEEeCCeEEEEeccc-------------ee-ecC----cC
Q psy16898 89 VLLDKV-PSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSK-------------VY-WNS----RL 149 (324)
Q Consensus 89 ~l~~~~-~~i~~V~~k~~~~~~~~~~~~~~~l~G~~~~~~~~~e~g~~f~id~~~-------------~f-~~~----r~ 149 (324)
...+++ +.+.++.++++.+...+++...+++++.-+..+...+++..|+.+++. .| |.. -.
T Consensus 326 ~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~~~ 405 (495)
T KOG2078|consen 326 EVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCDVS 405 (495)
T ss_pred HHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccCCC
Confidence 988743 557788888877777676666666555432222222444444444333 01 111 00
Q ss_pred hHHHHHHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 150 STEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 150 ~~e~~~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
.+|- ++.+.+ ...++++.+.| ++..+..-.+|...+...-+...+-.|...|+
T Consensus 406 s~e~-~V~ar~---~~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~ 458 (495)
T KOG2078|consen 406 STED-LVTARI---VAALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQLPANVLVNE 458 (495)
T ss_pred chHH-HHHHHH---Hhhcceeeccc--cceeeeeeeccCCCcccchhhhhcHHHHhhhh
Confidence 1121 111111 12456667777 33333334478888888877777777777666
No 280
>KOG2651|consensus
Probab=91.85 E-value=0.42 Score=46.05 Aligned_cols=41 Identities=29% Similarity=0.114 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
+-+.|+|+|+|.|.++..++- .|..|.|||.|..+.+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 456899999999999999887 46699999999887766643
No 281
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.47 E-value=2.9 Score=37.28 Aligned_cols=64 Identities=11% Similarity=0.188 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCc----hhHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH-HHHHHH
Q psy16898 163 GDLVLDVFAGVG----PFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA-RDFLQT 228 (324)
Q Consensus 163 g~~VLDl~~G~G----~~al~~a~--~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~-~~~~~~ 228 (324)
-+.+++.+|+-| +++|.+|. -|.++++|-.++......++.+...+ +.+.++|+.++. .+.+..
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~--~~~~vEfvvg~~~e~~~~~ 112 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG--LSDVVEFVVGEAPEEVMPG 112 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc--ccccceEEecCCHHHHHhh
Confidence 357888876654 44555554 36799999999998888888887667 765679999985 455554
No 282
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=91.33 E-value=0.3 Score=43.38 Aligned_cols=99 Identities=16% Similarity=0.131 Sum_probs=51.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
.++-+|.|+|||-+.+|..+ ..+..|...|+... |. . ++.+|+...+.+.
T Consensus 71 ~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n~-----~--Vtacdia~vPL~~----------- 120 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------NP-----R--VTACDIANVPLED----------- 120 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------ST-----T--EEES-TTS-S--T-----------
T ss_pred CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------CC-----C--EEEecCccCcCCC-----------
Confidence 35679999999999999543 34568999998752 22 2 4567877665432
Q ss_pred CCCCCCCCcccEEEECChhhhH---HHHHHHhc-cchhhcCCCCCCCEEEEEEcccC--CChhHHhHhhh
Q psy16898 241 EGNSTGGTAVARVIMNLPATAV---EYVRYLKV-LTREEFGKLSRPPVLYLYCFLPK--MDLETKKKIKS 304 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~a~---~~l~~~~~-l~~~~~~~~~~~g~vh~y~f~~~--~~~~~~~~v~~ 304 (324)
...|++|.-+--.+. +|+..+.. |+++ |.+.+..-... ....+.+.+++
T Consensus 121 -------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~--------G~L~IAEV~SRf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 121 -------ESVDVAVFCLSLMGTNWPDFIREANRVLKPG--------GILKIAEVKSRFENVKQFIKALKK 175 (219)
T ss_dssp -------T-EEEEEEES---SS-HHHHHHHHHHHEEEE--------EEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred -------CceeEEEEEhhhhCCCcHHHHHHHHheeccC--------cEEEEEEecccCcCHHHHHHHHHH
Confidence 358999887655433 35544444 7775 77777655443 22344444443
No 283
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=91.18 E-value=0.45 Score=47.43 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=28.8
Q ss_pred EEEEEcCCCchhHHHHHhcCCEEEEE---eCCHHHHHHHHH
Q psy16898 165 LVLDVFAGVGPFSIPAARRGAIVAAN---DLNPDSYAWLQA 202 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~~g~~V~av---D~~~~a~~~a~~ 202 (324)
++||+|||+|+||..+..++..+..+ |..+..++.|.+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 78999999999999999998755443 445555666543
No 284
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=91.07 E-value=0.44 Score=43.35 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=67.6
Q ss_pred HhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhh
Q psy16898 157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 157 ~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
+..+.+|.. |..+||+=-++..+.+..-++.++|+.|.-...++.|.... .++.+..+|.+..+.....
T Consensus 84 i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~d-----~~vrv~~~DG~~~l~a~LP----- 152 (279)
T COG2961 84 VRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAGD-----RRVRVLRGDGFLALKAHLP----- 152 (279)
T ss_pred HHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCCC-----cceEEEecCcHHHHhhhCC-----
Confidence 445566665 89999999998888887779999999999999999988732 2799999999887665322
Q ss_pred hcccCCCCCCCCcccEEEECChhhhH
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAV 262 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~ 262 (324)
++.+--.|++|||+-..
T Consensus 153 ---------P~erRglVLIDPPfE~~ 169 (279)
T COG2961 153 ---------PKERRGLVLIDPPFELK 169 (279)
T ss_pred ---------CCCcceEEEeCCCcccc
Confidence 13457799999999643
No 285
>KOG1201|consensus
Probab=91.07 E-value=1.8 Score=40.40 Aligned_cols=58 Identities=28% Similarity=0.279 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+.||=-|+|.| .+++.+|++|++++..|+|+...+...+.++.+| ++..+..|+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g-----~~~~y~cdis~ 97 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG-----EAKAYTCDISD 97 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC-----ceeEEEecCCC
Confidence 6889999999988 5788999999999999999999888888887666 57777777644
No 286
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.72 E-value=0.42 Score=42.10 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=29.2
Q ss_pred CEEEEEcCCCc----hhHHHHHh-----cC--CEEEEEeCCHHHHHHHHH
Q psy16898 164 DLVLDVFAGVG----PFSIPAAR-----RG--AIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 164 ~~VLDl~~G~G----~~al~~a~-----~g--~~V~avD~~~~a~~~a~~ 202 (324)
-+|+.+||++| ++|+.+.. .+ .+|+|.|+|+.+++.|++
T Consensus 33 lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 33 LRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 48999999999 45555555 12 399999999999999875
No 287
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=90.67 E-value=0.5 Score=43.74 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~ 201 (324)
..+||-.|||.|.++..+|++|..|.|+|.|--|+-...
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN 95 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH
Confidence 468999999999999999999999999999999865543
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=90.41 E-value=0.47 Score=44.15 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=24.8
Q ss_pred CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 214 PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 214 ~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
+.+++++|+.+++.... ..+||.|++|||+.
T Consensus 8 ~~~i~~gD~~~~l~~l~----------------~~siDlIitDPPY~ 38 (284)
T PRK11524 8 AKTIIHGDALTELKKIP----------------SESVDLIFADPPYN 38 (284)
T ss_pred CCEEEeccHHHHHHhcc----------------cCcccEEEECCCcc
Confidence 56899999999886542 24599999999984
No 289
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.25 E-value=0.22 Score=45.57 Aligned_cols=37 Identities=32% Similarity=0.415 Sum_probs=32.3
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~ 195 (324)
...+|+.++|+|+|||..|-.+-+.|..|+++|+--.
T Consensus 24 ~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~y 60 (330)
T COG3392 24 EDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYY 60 (330)
T ss_pred cccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHH
Confidence 3557889999999999999999999999999998543
No 290
>KOG2920|consensus
Probab=89.85 E-value=0.27 Score=45.51 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=35.0
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcC-CEEEEEeCCHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRG-AIVAANDLNPDSYA 198 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g-~~V~avD~~~~a~~ 198 (324)
.-.|++|||+|||.|--++.+..+| +.|...|.|.+.++
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 4478999999999999999999988 49999999998883
No 291
>KOG1099|consensus
Probab=89.57 E-value=1.5 Score=39.53 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCchhHHHHHhc--------CC---EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARR--------GA---IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~--------g~---~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
=++|+|||+..|.++..++++ +. +++|||+.+- -. ++ .|..+++|+...-..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aP--I~-GV~qlq~DIT~~sta--- 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------AP--IE-GVIQLQGDITSASTA--- 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Cc--cC-ceEEeecccCCHhHH---
Confidence 358999999999999999873 22 3999999873 23 44 577888888653211
Q ss_pred HhhhhhcccCCCCCCCCcccEEEECC-hhh-hH----HHHHHHhccchhh--cCCCCCCCEEEEEEcccCCChhHH
Q psy16898 232 AHLVRWSQSEGNSTGGTAVARVIMNL-PAT-AV----EYVRYLKVLTREE--FGKLSRPPVLYLYCFLPKMDLETK 299 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~fD~Vi~np-P~~-a~----~~l~~~~~l~~~~--~~~~~~~g~vh~y~f~~~~~~~~~ 299 (324)
+.+.+.+ ++...|.||+|= |+. .+ +|+++=.-+...+ .-.+++||.|..--|........-
T Consensus 105 e~Ii~hf-------ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLy 173 (294)
T KOG1099|consen 105 EAIIEHF-------GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLY 173 (294)
T ss_pred HHHHHHh-------CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHH
Confidence 1111111 135689999984 552 22 2332221122211 123567888888888777655443
No 292
>KOG0024|consensus
Probab=89.44 E-value=0.66 Score=43.87 Aligned_cols=45 Identities=29% Similarity=0.300 Sum_probs=37.9
Q ss_pred hhccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 158 KEVREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
..++.|.+||-+|||. |-.++..|+ -|+ +|+.+|+++..++.|++
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3477899999999994 666677777 477 99999999999999987
No 293
>KOG3924|consensus
Probab=89.38 E-value=1.7 Score=42.09 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=50.2
Q ss_pred HHhh--ccCCCEEEEEcCCCchhHHHHHhc-CC-EEEEEeCCHHHHHHHHHHHHHhCCC-----C-CCCeEEEeccHHH
Q psy16898 156 VTKE--VREGDLVLDVFAGVGPFSIPAARR-GA-IVAANDLNPDSYAWLQASIRLNERQ-----V-KTPISATQKDARD 224 (324)
Q Consensus 156 ~~~~--~~~g~~VLDl~~G~G~~al~~a~~-g~-~V~avD~~~~a~~~a~~N~~~n~~~-----l-~~~v~~~~~D~~~ 224 (324)
++++ +.+++...|||+|+|.....+|.. ++ .-+|+|+....-+++..|...+++. - .+.+..++++..+
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~ 262 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD 262 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence 4444 568899999999999999888773 44 7889999888888887776655210 1 2357788887654
No 294
>KOG2793|consensus
Probab=89.32 E-value=0.74 Score=42.05 Aligned_cols=46 Identities=33% Similarity=0.262 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchhHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~-g~~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
....||++|+|||-.++.+|.. ++.|..-|. +..+..++.|...|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~-~~~~~~L~~~~~~~~ 132 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDL-PKVVENLKFNRDKNN 132 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCc-hhhHHHHHHhhhhhh
Confidence 4557999999999999999984 557766664 556666666655554
No 295
>KOG3115|consensus
Probab=88.99 E-value=0.7 Score=40.92 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchhHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhCC-----CCCCCeEEEeccHHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNER-----QVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~~-----~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
+.-.+.|+|||-|++.+.++-. ..-++|.||--...++.++.+..-.. .+ .|+.+...++..++.+...
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~-~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQY-PNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccc-ccceeeeccchhhccchhh
Confidence 4457899999999999999874 44899999999888888887765321 02 2788999999998887654
No 296
>KOG0822|consensus
Probab=88.81 E-value=0.48 Score=47.48 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=46.9
Q ss_pred CEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~ 227 (324)
.+++-+|+|-|+++-...+ +..+++|||.||.|+-.++. .+... -+++|+++..|.+.+..
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~--W~~~Vtii~~DMR~w~a 435 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFEC--WDNRVTIISSDMRKWNA 435 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhh--hcCeeEEEeccccccCC
Confidence 3688999999999754443 33489999999999998865 33333 45689999999998864
No 297
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=88.64 E-value=2.8 Score=43.73 Aligned_cols=102 Identities=12% Similarity=-0.008 Sum_probs=62.0
Q ss_pred CEEEEEcCCCchhHHHHHh---------c---C-C-EEEEEeCCHHHHHHHHHHH--------------HH-----hCCC
Q psy16898 164 DLVLDVFAGVGPFSIPAAR---------R---G-A-IVAANDLNPDSYAWLQASI--------------RL-----NERQ 210 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~---------~---g-~-~V~avD~~~~a~~~a~~N~--------------~~-----n~~~ 210 (324)
-+|+|+|-|+|...+.+.+ . . . +++++|..|-..+.+.+-. .. .+
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g-- 136 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG-- 136 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC--
Confidence 4899999999997766652 1 1 2 8999997653322222211 11 12
Q ss_pred C-----C-C--CeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECC--hhh-----hHHHHHHHhc-cchh
Q psy16898 211 V-----K-T--PISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNL--PAT-----AVEYVRYLKV-LTRE 274 (324)
Q Consensus 211 l-----~-~--~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~np--P~~-----a~~~l~~~~~-l~~~ 274 (324)
+ . + +++++.+|+++.+.+.. ..||++..|+ |.. ..+++..+.. +++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~-----------------~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~- 198 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLD-----------------ARADAWFLDGFAPAKNPDMWSPNLFNALARLARP- 198 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhcc-----------------ccccEEEeCCCCCccChhhccHHHHHHHHHHhCC-
Confidence 1 1 1 35678899999887642 2399999995 543 2356666655 443
Q ss_pred hcCCCCCCCEEEEEEccc
Q psy16898 275 EFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 275 ~~~~~~~~g~vh~y~f~~ 292 (324)
++.+-.||...
T Consensus 199 -------~~~~~t~t~a~ 209 (662)
T PRK01747 199 -------GATLATFTSAG 209 (662)
T ss_pred -------CCEEEEeehHH
Confidence 46777776443
No 298
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=88.61 E-value=0.9 Score=42.05 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=43.1
Q ss_pred EEeccceeecCcChHHHHH-HHhhc----c-CCCEEEEEcCCCc----hhHHHHHhc-------CCEEEEEeCCHHHHHH
Q psy16898 137 KMDFSKVYWNSRLSTEHER-VTKEV----R-EGDLVLDVFAGVG----PFSIPAARR-------GAIVAANDLNPDSYAW 199 (324)
Q Consensus 137 ~id~~~~f~~~r~~~e~~~-~~~~~----~-~g~~VLDl~~G~G----~~al~~a~~-------g~~V~avD~~~~a~~~ 199 (324)
.++.+.||.++..-.+-.. ++..+ . ..-+|+-++|+|| ++|+.+.+. ..+|+|.|+|..+++.
T Consensus 65 tin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 65 TINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred hhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 3455667887764333222 22211 1 2348999999999 455555552 2489999999999999
Q ss_pred HHH
Q psy16898 200 LQA 202 (324)
Q Consensus 200 a~~ 202 (324)
|+.
T Consensus 145 A~~ 147 (268)
T COG1352 145 ARA 147 (268)
T ss_pred Hhc
Confidence 975
No 299
>KOG3201|consensus
Probab=87.50 E-value=1.8 Score=37.01 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCchh-HHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhC
Q psy16898 162 EGDLVLDVFAGVGPF-SIPAARR--GAIVAANDLNPDSYAWLQASIRLNE 208 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~-al~~a~~--g~~V~avD~~~~a~~~a~~N~~~n~ 208 (324)
.|.+||+||.|--.+ ++.+|.+ ...|.--|-|+.+++..++-...|.
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~ 78 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM 78 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc
Confidence 578999999995444 5666654 3489999999999999998887774
No 300
>KOG2360|consensus
Probab=86.46 E-value=0.65 Score=44.78 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=52.7
Q ss_pred cCCCEEEEEcCCCchhHHHHHh--c-CCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR--R-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~--~-g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+|..|+|.||-.|.-+.++|. + -.+++|.|.++.-.+..++-++.-| .+ .++...+|+...
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag--~~-~~~~~~~df~~t 276 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG--VS-IVESVEGDFLNT 276 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC--CC-ccccccccccCC
Confidence 3688999999999999999887 3 3489999999999999999998888 76 677778887664
No 301
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=85.23 E-value=2.2 Score=33.91 Aligned_cols=91 Identities=22% Similarity=0.243 Sum_probs=54.3
Q ss_pred CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcc
Q psy16898 172 GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAV 250 (324)
Q Consensus 172 G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 250 (324)
|+|.+++.+|+ .|++|+++|.++.-.+.+++ .+ .. .++..+-.++..+...- .++..+
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~G--a~---~~~~~~~~~~~~~i~~~------------~~~~~~ 59 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LG--AD---HVIDYSDDDFVEQIREL------------TGGRGV 59 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT--ES---EEEETTTSSHHHHHHHH------------TTTSSE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hc--cc---ccccccccccccccccc------------cccccc
Confidence 57889999998 68899999999998888764 34 32 23333222232222110 012358
Q ss_pred cEEEECChhhhHHHHHHHhccchhhcCCCCCCCEEEEEEccc
Q psy16898 251 ARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLP 292 (324)
Q Consensus 251 D~Vi~npP~~a~~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~ 292 (324)
|+|+--... ...+-.++..++++ |.+.++.+..
T Consensus 60 d~vid~~g~-~~~~~~~~~~l~~~--------G~~v~vg~~~ 92 (130)
T PF00107_consen 60 DVVIDCVGS-GDTLQEAIKLLRPG--------GRIVVVGVYG 92 (130)
T ss_dssp EEEEESSSS-HHHHHHHHHHEEEE--------EEEEEESSTS
T ss_pred eEEEEecCc-HHHHHHHHHHhccC--------CEEEEEEccC
Confidence 988876652 22233333335554 7788777766
No 302
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=83.80 E-value=13 Score=32.97 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA 222 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~ 222 (324)
++++||=.| |+|.++..+++ .|++|++++.++...+.+.+.++..+ .. ++.++.+|+
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~-~~~~~~~d~ 71 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG--GP-QPAIIPLDL 71 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC--CC-CceEEEecc
Confidence 677788777 57777776665 68899999999987776666555433 22 466666665
No 303
>KOG0919|consensus
Probab=83.69 E-value=0.81 Score=41.53 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=31.8
Q ss_pred CEEEEEcCCCchhH--HHHHhcCC-EEEEEeCCHHHHHHHHHHH
Q psy16898 164 DLVLDVFAGVGPFS--IPAARRGA-IVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 164 ~~VLDl~~G~G~~a--l~~a~~g~-~V~avD~~~~a~~~a~~N~ 204 (324)
-+||++++|.|++- +..|.-.+ -|-|+|+|+.|-+.-..|.
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~ 47 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY 47 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc
Confidence 47999999999874 44454334 7889999999888877774
No 304
>PRK13699 putative methylase; Provisional
Probab=83.60 E-value=2.1 Score=38.58 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=24.5
Q ss_pred eEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh
Q psy16898 215 ISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 215 v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~ 260 (324)
.+++++|+.+.+..... .++|.||.|||+.
T Consensus 2 ~~l~~gD~le~l~~lpd----------------~SVDLIiTDPPY~ 31 (227)
T PRK13699 2 SRFILGNCIDVMARFPD----------------NAVDFILTDPPYL 31 (227)
T ss_pred CeEEechHHHHHHhCCc----------------cccceEEeCCCcc
Confidence 46889999999887533 4599999999995
No 305
>KOG3987|consensus
Probab=82.98 E-value=0.26 Score=43.71 Aligned_cols=41 Identities=27% Similarity=0.172 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~ 202 (324)
...++||+|+|-|.++..++-.-.+|+|-|+|..|...+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 44699999999999999998765689999999999887754
No 306
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.76 E-value=2.8 Score=40.04 Aligned_cols=44 Identities=34% Similarity=0.451 Sum_probs=34.5
Q ss_pred hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+++|++|.-.||| +|.-++.-|+ .|+ +++|+|+|++-+++|++
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~ 228 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK 228 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh
Confidence 36689999888886 5555566666 566 99999999999999864
No 307
>KOG1098|consensus
Probab=82.68 E-value=1.1 Score=45.86 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=31.9
Q ss_pred hccCCCEEEEEcCCCchhHHHHHhc---CCEEEEEeCCH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNP 194 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~~---g~~V~avD~~~ 194 (324)
.+.++..||||||..|++..-+++. |.-|+|||+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 4678999999999999999999883 56899999988
No 308
>PRK06172 short chain dehydrogenase; Provisional
Probab=82.40 E-value=18 Score=32.13 Aligned_cols=58 Identities=19% Similarity=0.054 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.|+ +|.++..+++ .|++|+.++.++..++.+.+.++..+ .++.++.+|+.+
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 67 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG----GEALFVACDVTR 67 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCC
Confidence 4667887775 5666655554 68899999999988777666665444 358888888865
No 309
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.12 E-value=23 Score=31.43 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.| |+|.++..+++ +|++|+.++.+++.++.+.+.++..+ .++.++.+|+.+
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG----GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCC
Confidence 577888777 46666666554 68999999999887777666665544 257788888754
No 310
>PRK06194 hypothetical protein; Provisional
Probab=82.06 E-value=13 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=39.3
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++| +-.|+|.++..+++ +|++|+.+|.++..++.....+...+ . ++.++.+|+.+
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--A--EVLGVRTDVSD 66 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--C--eEEEEECCCCC
Confidence 56777 44456777766654 68999999999877666555444333 2 57888999865
No 311
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=81.95 E-value=4.9 Score=34.29 Aligned_cols=80 Identities=6% Similarity=-0.076 Sum_probs=49.9
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH--HHHHHHHHhhhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD--FLQTDARAHLVR 236 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~--~~~~~~~~~~~~ 236 (324)
...+.+|+=++|=+-..++.-.. .+..++-.|.+...-.. + ++ .|+.-|... -+.+..
T Consensus 23 ~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~----~~-~F~fyD~~~p~~~~~~l------ 83 (162)
T PF10237_consen 23 ALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G----GD-EFVFYDYNEPEELPEEL------ 83 (162)
T ss_pred cCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C----Cc-ceEECCCCChhhhhhhc------
Confidence 34577999999998888776622 34589999998753322 1 12 233334332 121111
Q ss_pred hcccCCCCCCCCcccEEEECChhhhHHHHHHH
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAVEYVRYL 268 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~ 268 (324)
...||+||+|||-...+.+...
T Consensus 84 ----------~~~~d~vv~DPPFl~~ec~~k~ 105 (162)
T PF10237_consen 84 ----------KGKFDVVVIDPPFLSEECLTKT 105 (162)
T ss_pred ----------CCCceEEEECCCCCCHHHHHHH
Confidence 1359999999999877766433
No 312
>PRK06949 short chain dehydrogenase; Provisional
Probab=81.88 E-value=20 Score=31.83 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+++||-.| |+|.++..+++ .|++|++++.+++.++.+...+...+ .++.++.+|+.+
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG----GAAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCC
Confidence 467777777 66777766665 58899999999988877766654333 257788888754
No 313
>KOG3045|consensus
Probab=81.86 E-value=2.5 Score=38.88 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~ 194 (324)
...+|.|+|||-+-++. +.-..|++.|+.+
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a 209 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA 209 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec
Confidence 56689999999998876 3334788888764
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.82 E-value=22 Score=31.70 Aligned_cols=60 Identities=27% Similarity=0.248 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|-.|+ +|.++..+++ +|++|+.++.++..++.+.+.+...+ ...++.++.+|+.+
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV--AGARVLAVPADVTD 69 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc--CCceEEEEEccCCC
Confidence 4667887775 4566655554 78999999999988877776665422 12357888888754
No 315
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=81.75 E-value=1.2 Score=35.29 Aligned_cols=33 Identities=15% Similarity=-0.045 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~ 195 (324)
-...+|+|||.|-+.-.+.+-|..=.|+|.-..
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 457999999999999999998999999997653
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.50 E-value=16 Score=32.56 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+++|-.|++ |.++..++ +.|++|+.++.+++.++.+.+.++..+ .++.++.+|+.+
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~ 69 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG----GKVVPVCCDVSQ 69 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC----CeEEEEEccCCC
Confidence 46788877764 55555555 468999999999988877766665433 257778888754
No 317
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.55 E-value=3.2 Score=41.97 Aligned_cols=42 Identities=38% Similarity=0.344 Sum_probs=34.7
Q ss_pred cCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 161 ~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
.++++|+=+|||+ |..++.+|+ .|+.|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3688999999995 556666676 58899999999999988765
No 318
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.51 E-value=17 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.033 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.| |+|.++..+++ +|++|+.++.++...+.+.+.+...+ .++.++..|+.+
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 65 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG----RRALAVPTDITD 65 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC----CceEEEecCCCC
Confidence 456777555 56777766554 78999999999987766665554333 257888888854
No 319
>PRK07102 short chain dehydrogenase; Provisional
Probab=80.44 E-value=13 Score=32.88 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=40.3
Q ss_pred CEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++-.| |+|.++..+++ +|++|++++.++...+...+++.... - .++.++.+|+.+.
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~-~~~~~~~~Dl~~~ 63 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG--A-VAVSTHELDILDT 63 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc--C-CeEEEEecCCCCh
Confidence 3566444 66777776655 68899999999987766555554433 2 3688999988764
No 320
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.26 E-value=18 Score=32.06 Aligned_cols=59 Identities=17% Similarity=0.030 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCch---hHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGP---FSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~---~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+++|=.|++.|. ++..++++|++|+.++.++..++.+.+.++..+ . .+..+..|..+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~--~~~~~~~D~~~ 65 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--D--NVYSFQLKDFS 65 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--C--CeEEEEccCCC
Confidence 46678877777653 445555689999999999998887766665544 2 35666666544
No 321
>PRK05854 short chain dehydrogenase; Provisional
Probab=80.14 E-value=24 Score=32.97 Aligned_cols=61 Identities=21% Similarity=0.091 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|++++=.|+ +|++|..+++ .|++|+.+..+++..+.+.+.+.... -..++.++..|+.+.
T Consensus 13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~--~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV--PDAKLSLRALDLSSL 77 (313)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEEecCCCH
Confidence 4667776665 4666666554 68999999999887776666664432 122588888888654
No 322
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=80.06 E-value=12 Score=29.14 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=45.8
Q ss_pred EcCCCchhHHHHHh---cCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhhhcccCC
Q psy16898 169 VFAGVGPFSIPAAR---RGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVRWSQSEG 242 (324)
Q Consensus 169 l~~G~G~~al~~a~---~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~~~~~~~ 242 (324)
+-||.|.++..+++ ++. .|+.+|.+++.++.+++ . .+.++.+|+.+. +.+..
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~------~~~~i~gd~~~~~~l~~a~------------ 59 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----E------GVEVIYGDATDPEVLERAG------------ 59 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----T------TSEEEES-TTSHHHHHHTT------------
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----c------ccccccccchhhhHHhhcC------------
Confidence 34788999988887 344 99999999998777642 2 267899998764 22211
Q ss_pred CCCCCCcccEEEECChhhhHH
Q psy16898 243 NSTGGTAVARVIMNLPATAVE 263 (324)
Q Consensus 243 ~~~~~~~fD~Vi~npP~~a~~ 263 (324)
..+.+.|++-.+.....
T Consensus 60 ----i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 60 ----IEKADAVVILTDDDEEN 76 (116)
T ss_dssp ----GGCESEEEEESSSHHHH
T ss_pred ----ccccCEEEEccCCHHHH
Confidence 13488888877665443
No 323
>PRK06914 short chain dehydrogenase; Provisional
Probab=79.90 E-value=21 Score=32.21 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|-.| |+|.++..++ ++|++|++++.+++..+...+.+...+ ...++.++.+|+.+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN--LQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCceeEEecCCCCH
Confidence 44566555 5556666654 468999999999887776655554434 334688889988663
No 324
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=79.89 E-value=2.4 Score=37.67 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh------cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR------RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~------~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+.++|+++|.-.|+-++..|. ..++|+++|++........ .+... +.++|+++.||..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp--~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHP--MSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG------TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcc--ccCceEEEECCCCC
Confidence 456999999999999988875 2359999999654332211 11123 34589999999865
No 325
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=79.52 E-value=3.2 Score=38.36 Aligned_cols=59 Identities=25% Similarity=0.142 Sum_probs=37.2
Q ss_pred CEEEEEcCCCchh--HHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPF--SIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~--al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
...||+|||.=+- .=..|+ ..++|+-||.+|-.+..++.-+..+. - +...++.+|+++-
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~--~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP--R-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T--T-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC--C-ccEEEEeCCCCCH
Confidence 3799999996533 233443 47899999999999999988776554 1 2488999999874
No 326
>KOG3178|consensus
Probab=79.34 E-value=5.8 Score=37.88 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=43.7
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
-...+|+|+|+|..+-.+...--+|-+++.+...+-.+..++. -+ |+.+-+|.+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g------V~~v~gdmfq 232 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG------VEHVAGDMFQ 232 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC------cceecccccc
Confidence 3789999999999999988854479999999988887777665 34 5667777665
No 327
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.33 E-value=3.8 Score=39.22 Aligned_cols=42 Identities=33% Similarity=0.449 Sum_probs=33.7
Q ss_pred cCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 161 ~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.++.+|+=+|||. |.+++.+|+ .|+ +|+++|.+++-++.|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3455999999984 666666777 566 99999999999999876
No 328
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.08 E-value=30 Score=30.39 Aligned_cols=58 Identities=26% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.| |+|.++..+++ +|++|++++-++.....+...+...+ .++.++.+|..+
T Consensus 5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~ 66 (251)
T PRK12826 5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG----GKARARQVDVRD 66 (251)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECCCCC
Confidence 356777555 56777776654 68899999999877766666555443 258888888765
No 329
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=79.05 E-value=23 Score=31.64 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=43.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.| |+|.++..+++ +|++|+.++.++...+.+...+...+ .++.++.+|+.+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~----~~~~~~~~Dl~d 72 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG----IDALWIAADVAD 72 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEccCCC
Confidence 467788777 67788877765 58899999999887777766665444 257788888865
No 330
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.97 E-value=23 Score=32.75 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+++||=.| |+|.+|..+++ +|++|+.+..++...+.+.+.+.... -..++.++.+|+.+.
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT--PGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCH
Confidence 466777555 56777776665 68899999998877666555554321 112578888888654
No 331
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.70 E-value=22 Score=31.67 Aligned_cols=59 Identities=24% Similarity=0.194 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.| |+|.++..+++ .|++|+.++.++..++.+.+.++..+ .++.++.+|+.+.
T Consensus 5 ~~k~~lItG-as~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 67 (254)
T PRK07478 5 NGKVAIITG-ASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG----GEAVALAGDVRDE 67 (254)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence 355677554 45666666554 68999999999988877766665444 2577888887553
No 332
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=78.43 E-value=29 Score=30.79 Aligned_cols=58 Identities=22% Similarity=0.154 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+++||=.| |+|.++..+++ +|++|+..+.++..++.+.+.++..+ . ++.++..|+.+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~--~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--L--SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--c--eEEEEEccCCC
Confidence 467888777 57777777665 68899999999988777666665444 2 47778888765
No 333
>PRK07062 short chain dehydrogenase; Provisional
Probab=78.27 E-value=24 Score=31.58 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|+++|=.|++ |.++..++ +.|++|+.++.+++.++.+.+.+.... -..++.++..|+.+.
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF--PGARLLAARCDVLDE 71 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEEecCCCH
Confidence 46778777754 55555544 478999999999988777666554332 112577788887654
No 334
>PRK09242 tropinone reductase; Provisional
Probab=77.93 E-value=25 Score=31.31 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|-.|+ +|.++..++ ++|++|+.++.+++..+....++.... -..++.++.+|+.+
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEF--PEREVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC--CCCeEEEEECCCCC
Confidence 4677877776 455555544 468999999999988877777665441 11357888888765
No 335
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.90 E-value=4.8 Score=38.84 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=35.9
Q ss_pred ccCCCEEEEEcCCC-chhHHHHHh-cCC-EEEEEeCCHHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGV-GPFSIPAAR-RGA-IVAANDLNPDSYAWLQAS 203 (324)
Q Consensus 160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~-~V~avD~~~~a~~~a~~N 203 (324)
+.+|++||..|||. |.+++.+|+ .|. +|++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 56789999998876 777777777 576 699999999988887753
No 336
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.68 E-value=29 Score=31.18 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCc-hhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVG-PFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G-~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|+++|-.|++.| +++..+|+ .|++|+.++.++...+.+++-.+. +. .+.++..|+.+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~~-~~~~~~~D~~~ 71 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE----LD-APIFLPLDVRE 71 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh----hc-cceEEecCcCC
Confidence 5788999998763 66665554 689999999887654433332222 22 24567777654
No 337
>PRK08251 short chain dehydrogenase; Provisional
Probab=77.40 E-value=28 Score=30.68 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|-.| |+|.++..+++ .|++|+.++.++...+.+...+.... -..++.++.+|+.+.
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY--PGIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC--CCceEEEEEcCCCCH
Confidence 35666555 57888877665 58899999999988877666554432 122588888888654
No 338
>PRK07576 short chain dehydrogenase; Provisional
Probab=77.24 E-value=34 Score=30.78 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.| |+|.++..+++ +|++|++++.+++.++.....+...+ .++.++..|+.+
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG----PEGLGVSADVRD 69 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CceEEEECCCCC
Confidence 466787776 46666665544 78999999999887665544444323 246778888754
No 339
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.80 E-value=41 Score=29.47 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.|+ +|.++..+++ +|++|+.++.++..++.+.+.+...+ .++.++..|+.+
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG----TEVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCC
Confidence 4667886664 5667766654 68899999999877766665554433 257788888754
No 340
>PRK08703 short chain dehydrogenase; Provisional
Probab=76.42 E-value=33 Score=30.11 Aligned_cols=58 Identities=14% Similarity=-0.026 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDAR 223 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~ 223 (324)
++++++-.| |+|.++..+++ +|++|+.++.++...+.+...+...+ -. .+.++..|..
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~-~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG--HP-EPFAIRFDLM 66 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC--CC-CcceEEeeec
Confidence 456888887 46777766665 68899999999987776666554333 21 3555666653
No 341
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.14 E-value=39 Score=29.57 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=40.8
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+.++|-.| |+|.++..+++ +|++|+.++.++...+.....+...+ .++.++..|..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 67 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG----VKVVIATADVSD 67 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CeEEEEECCCCC
Confidence 46777777 47888877655 68899999999887766655554333 358888888754
No 342
>PRK09291 short chain dehydrogenase; Provisional
Probab=76.10 E-value=25 Score=31.10 Aligned_cols=57 Identities=19% Similarity=0.080 Sum_probs=38.7
Q ss_pred CEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++|-.|+ +|.++..+++ +|++|++...++...+.+.......+ . ++.++.+|+.+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~ 63 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--L--ALRVEKLDLTDA 63 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--cceEEEeeCCCH
Confidence 45665554 6667666654 68999999998877666655554434 2 478888888664
No 343
>PRK05876 short chain dehydrogenase; Provisional
Probab=75.98 E-value=35 Score=31.08 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|+ +|.++..+++ +|++|+.++.++..++.+.+.++..+ . ++.++..|+.+
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~--~~~~~~~Dv~d 66 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--F--DVHGVMCDVRH 66 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--eEEEEeCCCCC
Confidence 4567776665 4666665554 68999999999887776655554434 2 47788888765
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.92 E-value=3.4 Score=35.94 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=18.5
Q ss_pred CCchhHHHH----HhcCCEEEEEeCCHHHHHHH
Q psy16898 172 GVGPFSIPA----ARRGAIVAANDLNPDSYAWL 200 (324)
Q Consensus 172 G~G~~al~~----a~~g~~V~avD~~~~a~~~a 200 (324)
|.|..|+.+ |+.|.+|+|+|+|++-++.+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l 39 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEAL 39 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHH
Confidence 566665554 45789999999999877664
No 345
>PRK07814 short chain dehydrogenase; Provisional
Probab=75.84 E-value=44 Score=29.96 Aligned_cols=59 Identities=14% Similarity=0.011 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|+ +|.++..+++ +|++|+.++.+++.++.+.+.+...+ .++.++..|..+.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG----RRAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence 4677887774 6777766554 68999999999887776665554323 2577888887653
No 346
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.33 E-value=36 Score=30.42 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=36.5
Q ss_pred EEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 165 LVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++|=.|+ +|.++..++ ++|++|+.++.++..++.+.+.++..+ ++.++..|+.+
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG-----EVYAVKADLSD 59 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-----CceEEEcCCCC
Confidence 3555554 455665554 478999999999988777766654322 57788888754
No 347
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=75.05 E-value=24 Score=33.45 Aligned_cols=42 Identities=29% Similarity=0.452 Sum_probs=30.8
Q ss_pred hccCCCEEEEEcCCCchhH---HHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFS---IPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~a---l~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+.+|++||=.|| |.++ +.+|+ .|+ +|+++|.++.-.+.+++
T Consensus 173 ~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3568999998865 5555 44555 577 59999999998888753
No 348
>PRK07677 short chain dehydrogenase; Provisional
Probab=74.88 E-value=39 Score=29.95 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
|+++|-.|+ +|.++..++ ++|++|+.++.++...+.+...+...+ .++.++.+|+.+
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP----GQVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEecCCC
Confidence 356675555 455555544 478999999999887766655554333 357888888754
No 349
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.23 E-value=40 Score=30.31 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=38.6
Q ss_pred EEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 165 LVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+||-.| |+|.++..+++ +|.+|+.++.++...+.+...++..+ .++.++.+|+.+.
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~ 61 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG----GDGFYQRCDVRDY 61 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEEccCCCH
Confidence 455444 46677666654 68899999999887777666665444 2577888887653
No 350
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.14 E-value=6.8 Score=38.17 Aligned_cols=45 Identities=24% Similarity=0.282 Sum_probs=32.2
Q ss_pred hccCCCEEEEEcCCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQASI 204 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~N~ 204 (324)
.+.++++||-+.+| |.-++.++. ..++|+|||+||.....++-.+
T Consensus 32 ~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 32 NIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 36788999988765 444444444 4469999999998877765443
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=74.06 E-value=9.7 Score=35.24 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=54.8
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcc
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQ 239 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~ 239 (324)
+.+|....|||+-.|+++-.+.+++..|++||--+-+-. +-.. +.|+-...|.+.|-+.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~s-----L~dt-----g~v~h~r~DGfk~~P~----------- 267 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQS-----LMDT-----GQVTHLREDGFKFRPT----------- 267 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcceEEEEeccchhhhh-----hhcc-----cceeeeeccCcccccC-----------
Confidence 568999999999999999999999999999997764322 2222 3678888888877542
Q ss_pred cCCCCCCCCcccEEEECChh
Q psy16898 240 SEGNSTGGTAVARVIMNLPA 259 (324)
Q Consensus 240 ~~~~~~~~~~fD~Vi~npP~ 259 (324)
+...|-.|+|.-.
T Consensus 268 -------r~~idWmVCDmVE 280 (358)
T COG2933 268 -------RSNIDWMVCDMVE 280 (358)
T ss_pred -------CCCCceEEeehhc
Confidence 2348888888633
No 352
>PRK06139 short chain dehydrogenase; Provisional
Probab=73.99 E-value=37 Score=32.11 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++||=.|+ +|.++..+++ +|++|+.++.+++.++.+.+.++..+ . ++.++..|+.+
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~--~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--A--EVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--C--cEEEEEeeCCC
Confidence 4566776655 5666665554 78999999999999888877776555 3 47777788754
No 353
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.50 E-value=46 Score=29.78 Aligned_cols=59 Identities=22% Similarity=0.136 Sum_probs=41.4
Q ss_pred CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|-.|++. .++.. +++.|++|+.++.+++.++.+..+++..+ .++.++.+|+.+.
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 71 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG----IEAHGYVCDVTDE 71 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence 466777777654 44444 45578999999999988877777766444 2578888888653
No 354
>PLN02253 xanthoxin dehydrogenase
Probab=73.36 E-value=27 Score=31.54 Aligned_cols=58 Identities=22% Similarity=0.103 Sum_probs=38.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|=.| |+|.++..+++ .|++|+.++.++...+.+.+.+.. + .++.++.+|+.+.
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~Dl~d~ 78 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-E----PNVCFFHCDVTVE 78 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-C----CceEEEEeecCCH
Confidence 466777776 55677766554 689999999988766554443321 1 2578888888654
No 355
>KOG0821|consensus
Probab=73.34 E-value=10 Score=34.21 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhccc
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 240 (324)
..+-|.++|.|.|+++..+...|+ +...||+++..+.-++.-.+... .+..+.++|+..+--+... ......
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~----~~~~IHh~D~LR~~I~~~~---~~~~~R 122 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP----GKLRIHHGDVLRFKIEKAF---SESLKR 122 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC----cceEEeccccceehHHhhc---chhhcC
Confidence 567899999999999999998876 89999999998887776555333 3678889998766332211 111111
Q ss_pred CCCCCCCCcccEEEECChhh
Q psy16898 241 EGNSTGGTAVARVIMNLPAT 260 (324)
Q Consensus 241 ~~~~~~~~~fD~Vi~npP~~ 260 (324)
++..+ ...-|||-|+|..
T Consensus 123 pw~d~--~p~~H~IGNLPf~ 140 (326)
T KOG0821|consen 123 PWEDD--PPNVHIIGNLPFS 140 (326)
T ss_pred CcccC--CCceEEeccCCcc
Confidence 11111 1145899999983
No 356
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.96 E-value=14 Score=32.44 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+.++|-.| |+|.+|..+++ +|++|++++.++.....+.+.+... .++.++.+|+.+
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~~~D~~~ 65 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-----GNVLGLAADVRD 65 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-----CcEEEEEccCCC
Confidence 356777777 57888777765 6889999999997776665544321 257778888654
No 357
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.58 E-value=31 Score=32.66 Aligned_cols=42 Identities=31% Similarity=0.375 Sum_probs=32.2
Q ss_pred ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898 160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~ 201 (324)
+++|++||=.| .|+|.+++.+|+ .|+.++++-.+++-.+.++
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~ 184 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK 184 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH
Confidence 66899998887 578999999999 5667777777776555443
No 358
>KOG0022|consensus
Probab=72.44 E-value=7.9 Score=36.75 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=33.3
Q ss_pred hhccCCCEEEEEcCCCchhHHH-HHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 158 KEVREGDLVLDVFAGVGPFSIP-AAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 158 ~~~~~g~~VLDl~~G~G~~al~-~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
+.+.+|.++.-.|+|.=+++.. -|+ +|+ +++|||+|++-++.|++
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3467899998888765444433 334 577 99999999999998864
No 359
>PRK06125 short chain dehydrogenase; Provisional
Probab=72.36 E-value=41 Score=29.97 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|+ +|.++..++ +.|++|++++.+++..+.+...+.... ..++.++..|+.+
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH---GVDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCC
Confidence 4567777775 555666554 468999999999987777666655432 1257788888754
No 360
>PRK07774 short chain dehydrogenase; Provisional
Probab=72.36 E-value=53 Score=28.87 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|=.| |+|.++..+++ +|++|+.++.++...+.+...+...+ .++.++..|+.+.
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 67 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG----GTAIAVQVDVSDP 67 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCCH
Confidence 456677555 66777777665 68899999999877766655444222 2467778887654
No 361
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.26 E-value=41 Score=30.79 Aligned_cols=58 Identities=24% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCH---------HHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNP---------DSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~---------~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.|++. .++..+ ++.|++|+.++.+. +.++.+.+.+...+ .++.++..|+.+
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG----GEAVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC----CceEEEeCCCCC
Confidence 567788877654 455444 45789999888765 55555444444333 257778888755
No 362
>PRK07904 short chain dehydrogenase; Provisional
Probab=72.00 E-value=11 Score=33.87 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=42.7
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh----cC-CEEEEEeCCHHH-HHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR----RG-AIVAANDLNPDS-YAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~----~g-~~V~avD~~~~a-~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+..+++||-.|| +|.+|..+++ +| ++|+.++.++.. ++.+.+.++..+ -. +++++.+|+.+.
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~--~~-~v~~~~~D~~~~ 72 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG--AS-SVEVIDFDALDT 72 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC--CC-ceEEEEecCCCh
Confidence 456678887777 5677776665 44 799999988774 665555555444 22 688898988653
No 363
>PRK08643 acetoin reductase; Validated
Probab=71.83 E-value=52 Score=29.12 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=39.8
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|=.| |+|.++..+++ +|++|+.++.++...+.+...+...+ .++.++.+|+.+.
T Consensus 2 ~k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 63 (256)
T PRK08643 2 SKVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG----GKAIAVKADVSDR 63 (256)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECCCCCH
Confidence 34556454 55667766554 68899999999888777766665433 2577888887653
No 364
>PRK09186 flagellin modification protein A; Provisional
Probab=71.67 E-value=60 Score=28.62 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++||=.|+ +|.++..+++ .|++|+.++.+++.++.+...+.... -...+.++.+|+.+
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~d 66 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEF--KSKKLSLVELDITD 66 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhc--CCCceeEEEecCCC
Confidence 4567776665 4667666654 68899999999888777766664331 11246677788755
No 365
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.48 E-value=23 Score=36.48 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=42.0
Q ss_pred cCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCC-------CCCeEEEeccHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQV-------KTPISATQKDARDF 225 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l-------~~~v~~~~~D~~~~ 225 (324)
+.|++||-.| |+|.+|..+++ .|++|++++.++..+..+..++...+ + ..++.++.+|+.+.
T Consensus 78 ~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~--L~~~Ga~~~~~v~iV~gDLtD~ 150 (576)
T PLN03209 78 KDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMK--LDVEGTQPVEKLEIVECDLEKP 150 (576)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhc--cccccccccCceEEEEecCCCH
Confidence 3666666544 56778777654 68899999999887766655544322 1 12588899998763
No 366
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=71.16 E-value=21 Score=30.48 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCchhHHHHHhc---CCEEEE--EeCCHHHHHH---HHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCC
Q psy16898 172 GVGPFSIPAARR---GAIVAA--NDLNPDSYAW---LQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGN 243 (324)
Q Consensus 172 G~G~~al~~a~~---g~~V~a--vD~~~~a~~~---a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
|-=+||+.+++. +..++| .|...+..+. +..|++.-. -.+-......||.++-.....
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~--~~g~~V~~~VDat~l~~~~~~------------ 71 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR--ELGVTVLHGVDATKLHKHFRL------------ 71 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh--hcCCccccCCCCCcccccccc------------
Confidence 344555666663 335554 4555544433 345655432 111223455677665443211
Q ss_pred CCCCCcccEEEECChhhh------H-------HHHHHHhccchhhcCCCCCCCEEEEEEcccCC
Q psy16898 244 STGGTAVARVIMNLPATA------V-------EYVRYLKVLTREEFGKLSRPPVLYLYCFLPKM 294 (324)
Q Consensus 244 ~~~~~~fD~Vi~npP~~a------~-------~~l~~~~~l~~~~~~~~~~~g~vh~y~f~~~~ 294 (324)
....||+||.|-|... . .++..|-. .....+..+|.||+-.+....
T Consensus 72 --~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~---Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 --KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFK---SASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred --cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHH---HHHHhcCCCCEEEEEeCCCCC
Confidence 1356999999999865 1 12222211 011234457999988877765
No 367
>KOG2782|consensus
Probab=71.02 E-value=2.8 Score=37.65 Aligned_cols=96 Identities=11% Similarity=0.058 Sum_probs=63.8
Q ss_pred cCCCEEEEEcCCCchhHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 161 REGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
.+|...+|+--|.|+.+-.+.++. .++++.|.+|-|.+.|..-.... ....+..+.+..... +....+.
T Consensus 42 v~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~-~~l~~~~----- 112 (303)
T KOG2782|consen 42 VRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYI-KSLIADT----- 112 (303)
T ss_pred CCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHH-HHHHHHh-----
Confidence 378899999999999999998864 48999999999999988766321 111232222322221 2221111
Q ss_pred ccCCCCCCCCcccEEEECChhhhHHHHHHHhc
Q psy16898 239 QSEGNSTGGTAVARVIMNLPATAVEYVRYLKV 270 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~a~~~l~~~~~ 270 (324)
+-....+|-|+||+-.++.++-..-++
T Consensus 113 -----gl~~~~vDGiLmDlGcSSMQ~d~peRG 139 (303)
T KOG2782|consen 113 -----GLLDVGVDGILMDLGCSSMQVDNPERG 139 (303)
T ss_pred -----CCCcCCcceEEeecCccccccCCcccc
Confidence 111345999999998887777666666
No 368
>PRK08303 short chain dehydrogenase; Provisional
Probab=70.89 E-value=35 Score=31.81 Aligned_cols=59 Identities=17% Similarity=-0.039 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCH----------HHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNP----------DSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~----------~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|+++|-.|++ ++++..+++ .|++|+.++.+. +.++.+.+.+...+ .++.++.+|+.+.
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG----GRGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence 46788888855 446666554 689999998873 33444444443333 2467788887653
No 369
>PRK06720 hypothetical protein; Provisional
Probab=70.87 E-value=65 Score=27.34 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCCEEEEEcCCCchhHH----HHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSI----PAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++++-.|++. +++. .+++.|++|+.+|.++...+.+.+.+...+ ....++..|..+
T Consensus 15 ~gk~~lVTGa~~-GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~ 76 (169)
T PRK06720 15 AGKVAIVTGGGI-GIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG----GEALFVSYDMEK 76 (169)
T ss_pred CCCEEEEecCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCC
Confidence 466777777654 3443 344578999999999887766555554323 246677788754
No 370
>KOG1562|consensus
Probab=70.73 E-value=23 Score=33.31 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=61.1
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHH--hCCCCC-CCeEEEeccHHHHHHHHHHHhh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGA--IVAANDLNPDSYAWLQASIRL--NERQVK-TPISATQKDARDFLQTDARAHL 234 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~--~V~avD~~~~a~~~a~~N~~~--n~~~l~-~~v~~~~~D~~~~~~~~~~~~~ 234 (324)
+...++||-+|.|-|++....++... .+.-+|++...++..++=... .+ .. .++.+.-||...|++....
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~--- 193 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKE--- 193 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhcc---
Confidence 44667999999999999988888643 788999999888877664432 23 33 3799999999999987533
Q ss_pred hhhcccCCCCCCCCcccEEEEC
Q psy16898 235 VRWSQSEGNSTGGTAVARVIMN 256 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~fD~Vi~n 256 (324)
..||+||.|
T Consensus 194 -------------~~~dVii~d 202 (337)
T KOG1562|consen 194 -------------NPFDVIITD 202 (337)
T ss_pred -------------CCceEEEEe
Confidence 359999986
No 371
>PRK08339 short chain dehydrogenase; Provisional
Probab=70.71 E-value=20 Score=32.39 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCchhHHHH----HhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPA----ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~----a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+|+++|-.|++ |.++..+ ++.|++|+.++.++..++.+.+.+.... ..++.++.+|+.+.
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES---NVDVSYIVADLTKR 70 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc---CCceEEEEecCCCH
Confidence 46777766654 4555544 4479999999999988777766654321 12578888887654
No 372
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.67 E-value=19 Score=31.53 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++||-.|++ |.++..+++ .|++|++++.++.....+.+.+...+ ++.++.+|..+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG-----NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CeEEEECCCCC
Confidence 45688888874 666666664 68899999999887766544443322 57788888764
No 373
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=70.56 E-value=44 Score=31.34 Aligned_cols=40 Identities=33% Similarity=0.328 Sum_probs=28.7
Q ss_pred ccCCCEEEEEcCCCchhHHH---HHh-cCCE-EEEEeCCHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIP---AAR-RGAI-VAANDLNPDSYAWLQ 201 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~---~a~-~g~~-V~avD~~~~a~~~a~ 201 (324)
+.+|++||=.|| |++++. +|+ .|++ |++++.+++..+.++
T Consensus 158 ~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 158 GCEGKNVIIIGA--GTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 457889988865 555544 444 5774 899999998877764
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=70.56 E-value=53 Score=29.63 Aligned_cols=58 Identities=22% Similarity=0.158 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|+ +|.++..++ ++|++|+.++.+ ..++.+.+.++..+ .++.++..|+.+.
T Consensus 5 ~~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 66 (272)
T PRK08589 5 ENKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG----GKAKAYHVDISDE 66 (272)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC----CeEEEEEeecCCH
Confidence 3567776665 455565554 479999999999 44444444444333 2577888887543
No 375
>PRK05866 short chain dehydrogenase; Provisional
Probab=69.99 E-value=60 Score=29.89 Aligned_cols=58 Identities=28% Similarity=0.170 Sum_probs=40.3
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|+ +|.+|..++ +.|++|++++.+++.++.+.+.+...+ ..+.++.+|+.+
T Consensus 39 ~~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~----~~~~~~~~Dl~d 100 (293)
T PRK05866 39 TGKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG----GDAMAVPCDLSD 100 (293)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEccCCC
Confidence 3567776665 566666655 468899999999988777666654333 247788888765
No 376
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=69.95 E-value=9.9 Score=35.78 Aligned_cols=44 Identities=16% Similarity=0.032 Sum_probs=31.9
Q ss_pred hccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
.+++|++||=.|+| +|.+++.+|+ .|++|++++.+++..+.+++
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 35689999988863 3444455555 58899999999988776654
No 377
>PTZ00357 methyltransferase; Provisional
Probab=69.81 E-value=12 Score=39.28 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=42.7
Q ss_pred EEEEEcCCCchhHHH---HHh-cC--CEEEEEeCCHHHHHHHHHHHHHh-CCCC-------CCCeEEEeccHHHHH
Q psy16898 165 LVLDVFAGVGPFSIP---AAR-RG--AIVAANDLNPDSYAWLQASIRLN-ERQV-------KTPISATQKDARDFL 226 (324)
Q Consensus 165 ~VLDl~~G~G~~al~---~a~-~g--~~V~avD~~~~a~~~a~~N~~~n-~~~l-------~~~v~~~~~D~~~~~ 226 (324)
.|+-+|||-|++--. +++ .| .+|+|||.|+.++.....+...+ . - .+.|+++..|.+.+-
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~ee--W~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPE--WTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccc--cccccccCCCeEEEEeCcccccc
Confidence 689999999999644 444 23 38999999987666665554221 1 2 235999999999984
No 378
>PRK06138 short chain dehydrogenase; Provisional
Probab=69.80 E-value=42 Score=29.52 Aligned_cols=58 Identities=21% Similarity=0.167 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|| +|.++..+++ +|++|++++.++.........+. .+ .++.++.+|+.+.
T Consensus 4 ~~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~----~~~~~~~~D~~~~ 65 (252)
T PRK06138 4 AGRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG----GRAFARQGDVGSA 65 (252)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC----CeEEEEEcCCCCH
Confidence 3556776666 5666666554 68899999999877766555554 23 2578888887653
No 379
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=69.68 E-value=51 Score=29.25 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=38.2
Q ss_pred CCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++|-.| |+|.++..++ ++|++|+.++.++...+.....++... -..++.++.+|..+
T Consensus 2 ~k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~ 64 (259)
T PRK12384 2 NQVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY--GEGMAYGFGADATS 64 (259)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc--CCceeEEEEccCCC
Confidence 34677777 4566665555 478999999999877766554443211 11257888888765
No 380
>PRK05875 short chain dehydrogenase; Provisional
Probab=69.52 E-value=55 Score=29.38 Aligned_cols=60 Identities=20% Similarity=0.090 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.|+ +|.++..+++ +|++|++++.++...+.....+.... ...++.++.+|+.+
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK--GAGAVRYEPADVTD 69 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc--CCCceEEEEcCCCC
Confidence 3567887764 4666766654 68899999998876665554443221 11367888888755
No 381
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.45 E-value=45 Score=30.27 Aligned_cols=59 Identities=14% Similarity=-0.050 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCC-chh----HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGV-GPF----SIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~----al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|-.|++. +++ +..+++.|++|+.++.+....+.+++-.+..+ ...++..|+.+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g-----~~~~~~~Dv~d~ 69 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG-----SDFVLPCDVEDI 69 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC-----CceEEeCCCCCH
Confidence 567889888865 244 44555679999998877644333333222222 234567787553
No 382
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.30 E-value=69 Score=30.21 Aligned_cols=59 Identities=24% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+++||=.| |+|.++..++ ++|++|+.++.+++.++.+.+.++..+ .++.++.+|+.+.
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g----~~~~~v~~Dv~d~ 69 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG----GEALAVVADVADA 69 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC----CcEEEEEecCCCH
Confidence 345666665 5566666665 478999999999988887777666444 2578888887553
No 383
>PRK07035 short chain dehydrogenase; Provisional
Probab=68.80 E-value=56 Score=28.82 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|++ |.++..++ +.|++|+.++.++...+.+.+.+...+ .++.++..|..+.
T Consensus 7 ~~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 69 (252)
T PRK07035 7 TGKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG----GKAEALACHIGEM 69 (252)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCCH
Confidence 34567766655 55555544 468899999999887776666554333 2467777777543
No 384
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=68.78 E-value=81 Score=27.94 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=40.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+++||-.| |+|.++..+++ +|++|+.++.++...+.+...++.-+ .++.++..|+.+.
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~ 72 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG----GQAFACRCDITSE 72 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence 467888888 45666665554 68899999998887776655544323 2577888887654
No 385
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=68.49 E-value=55 Score=29.46 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.|+ +|.++..+++ .|++|+.++.+++..+.+.+.+...+ .++.++.+|+.+
T Consensus 9 ~~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 70 (278)
T PRK08277 9 KGKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG----GEALAVKADVLD 70 (278)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEECCCCC
Confidence 3566665554 4556655554 68899999999887776665554433 257888888754
No 386
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=68.36 E-value=11 Score=35.58 Aligned_cols=43 Identities=33% Similarity=0.611 Sum_probs=31.6
Q ss_pred ccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
+.+|++||=.|||. |..++.+|+ .|++|++++.+++-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 56789999998732 444444555 57799999999998887753
No 387
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.29 E-value=26 Score=30.82 Aligned_cols=59 Identities=17% Similarity=-0.004 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|-.| |+|.++..+++ +|++|++++.++...+.+.+.++..+ .++.++.+|+.+.
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG----VKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC----CcEEEEEccCCCH
Confidence 345677776 46777766665 68899999999887666555444322 3588888988653
No 388
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.06 E-value=9.3 Score=36.12 Aligned_cols=41 Identities=2% Similarity=-0.014 Sum_probs=29.6
Q ss_pred ccCCCEEEEEcCCCchhH---HHHHhc--C-CEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFS---IPAARR--G-AIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~a---l~~a~~--g-~~V~avD~~~~a~~~a~~ 202 (324)
+.+|++||=.|| |+++ +.++++ | ++|+++|.+++-++.+++
T Consensus 161 ~~~g~~VlV~G~--G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGD--GNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 467899998886 4454 444542 4 489999999988887764
No 389
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=67.92 E-value=21 Score=31.51 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=41.6
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++|| +..|+|.++..+++ +|.+|++++.++...+.+...++..+ .++.++.+|..+
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG----GKAIGVAMDVTD 64 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEcCCCC
Confidence 45566 44567888888776 58899999999988777666665444 257888888754
No 390
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=67.88 E-value=12 Score=34.72 Aligned_cols=43 Identities=28% Similarity=0.406 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
+.++++||..+|| +|..++.+|+ .|++|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 5678889888765 4677777777 68899999999988877643
No 391
>PRK07024 short chain dehydrogenase; Provisional
Probab=67.83 E-value=48 Score=29.52 Aligned_cols=55 Identities=22% Similarity=0.171 Sum_probs=36.6
Q ss_pred CEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++||=.|+ +|.+|..+++ +|++|+.++.+++.++.+.+.+. . .. ++.++.+|+.+
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~--~~-~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--K--AA-RVSVYAADVRD 61 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--c--CC-eeEEEEcCCCC
Confidence 45655554 6677766554 68899999999887665544332 1 11 57888888865
No 392
>KOG2798|consensus
Probab=67.54 E-value=12 Score=35.54 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWL 200 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a 200 (324)
.-++|-.|||.|.++..+|..|..+-|+|.|--|+-.-
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S 188 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICS 188 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHH
Confidence 45899999999999999999999999999888776543
No 393
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.48 E-value=35 Score=29.97 Aligned_cols=58 Identities=24% Similarity=0.189 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.| |+|.++..+++ +|++|++++.++...+.+..++.. + .++.++.+|+.+.
T Consensus 4 ~~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~----~~~~~~~~D~~~~ 65 (251)
T PRK07231 4 EGKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G----GRAIAVAADVSDE 65 (251)
T ss_pred CCcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C----CeEEEEECCCCCH
Confidence 345666665 44566665554 688999999999877766555543 3 1478888887653
No 394
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=67.24 E-value=61 Score=28.68 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.| |+|.++..+++ .|++|+..+.++..+..+...++..+ .++.++.+|+.+
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~ 69 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG----IKAHAAPFNVTH 69 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC----CeEEEEecCCCC
Confidence 456777666 55667666654 68899999999887776665555333 246777788755
No 395
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.15 E-value=48 Score=29.81 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=35.3
Q ss_pred CCCEEEEEcC-CCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFA-GVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~-G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.|+ ++++++..+|+ .|++|+....+....+.+++-.+..+ ....+.+|+.+
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~ 67 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD-----SELVFRCDVAS 67 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC-----CceEEECCCCC
Confidence 4678888887 46777777665 68999887665443333333222222 23467777755
No 396
>PRK12939 short chain dehydrogenase; Provisional
Probab=67.10 E-value=23 Score=31.09 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++| +-.|+|.++..+++ +|++|++++.+++.+....+.++.-+ .++.++.+|+.+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 67 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG----GRAHAIAADLAD 67 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCC
Confidence 456777 44567888887765 68899999999887776655554322 258888888865
No 397
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=66.91 E-value=24 Score=32.77 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+++||-.| |+|.+|..+++ .|++|+++..++.............+ ...+++++.+|+.+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG--AKERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC--CCCceEEEeCCCCCc
Confidence 466777766 67888777665 58899887766654333222111122 223688899998764
No 398
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.89 E-value=52 Score=29.29 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+|+++|-.|+ +|.++..+++ .|++|+.++.++. +.+.+.++..+ .++.++..|+.+.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~----~~~~~~~~Dl~~~ 67 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG----RKFHFITADLIQQ 67 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC----CeEEEEEeCCCCH
Confidence 4678887775 5666666554 6899998876542 22233333223 3578888887653
No 399
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=66.78 E-value=12 Score=35.28 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.5
Q ss_pred cCCCEEEEEcCCCchhHH---HHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSI---PAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al---~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+|++||=.|| |++++ .+|+ .|+ +|+++|.+++.++.+++
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 36888888765 45554 4455 577 79999999998888764
No 400
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=66.45 E-value=5.5 Score=36.62 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~N~~ 205 (324)
+|.++||+|||.-...+..|..-+ +++..|..+...+.+++=++
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC
Confidence 577999999999777666665555 89999999999988776554
No 401
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=66.24 E-value=8.8 Score=35.31 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHhhccC-CCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHH
Q psy16898 155 RVTKEVRE-GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYA 198 (324)
Q Consensus 155 ~~~~~~~~-g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~ 198 (324)
.+...+.+ ..+.+|+|||.|.+++.+.. ..++.+|+|+..+.
T Consensus 17 ~i~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~ 59 (266)
T TIGR00571 17 EIKKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLIN 59 (266)
T ss_pred HHHHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHH
Confidence 35555654 46899999999999986643 35888999998764
No 402
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=65.06 E-value=69 Score=29.74 Aligned_cols=59 Identities=15% Similarity=0.052 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|-.| |+|.++..+++ +|++|+.++.++...+.+.+.+...+ .++.++..|+.+.
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~ 67 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP----DSYTIIHIDLGDL 67 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC----CceEEEEecCCCH
Confidence 356677666 45667766655 68899999998877665555443222 2578888887653
No 403
>PRK05872 short chain dehydrogenase; Provisional
Probab=64.92 E-value=51 Score=30.29 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|+++|-.| |+|.++..+++ +|++|+.++.++..++.+.+.+.. + ..+..+..|+.+
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-~----~~~~~~~~Dv~d 68 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-D----DRVLTVVADVTD 68 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-C----CcEEEEEecCCC
Confidence 467777666 45666666554 689999999999877665544421 2 135555677654
No 404
>PRK08226 short chain dehydrogenase; Provisional
Probab=64.88 E-value=79 Score=28.07 Aligned_cols=57 Identities=23% Similarity=0.188 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|-.|+ +|.++..+++ +|++|+.++.++...+.+++ +...+ .++.++.+|+.+
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~----~~~~~~~~Dl~~ 65 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG----HRCTAVVADVRD 65 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC----CceEEEECCCCC
Confidence 3567775554 6777766665 68899999998764443332 22223 257788888765
No 405
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=64.83 E-value=14 Score=35.17 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898 160 VREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 160 ~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~ 201 (324)
+.+|++||=.|+ |+|.+++.+|+ .|++|++++.+++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 568999988886 48888888888 6889999999998777664
No 406
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=64.26 E-value=20 Score=33.68 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=37.2
Q ss_pred ccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~ 205 (324)
+..|.+|+-+|+|-..+--.+++.-++|.+||+|+.-+..-+-.+.
T Consensus 61 ~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 5678899999999887777788878899999999987766544433
No 407
>PLN02780 ketoreductase/ oxidoreductase
Probab=64.26 E-value=26 Score=32.96 Aligned_cols=59 Identities=24% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCCEEEEEcCCCchhH----HHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHH
Q psy16898 162 EGDLVLDVFAGVGPFS----IPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDAR 223 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~a----l~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~ 223 (324)
.|.++|=.||+ |++| ..++++|++|+.++.+++.++.+.+.++... -..++..+..|..
T Consensus 52 ~g~~~lITGAs-~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~--~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPT-DGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY--SKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCC-cHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC--CCcEEEEEEEECC
Confidence 47788888864 4444 4455579999999999998888777765432 1124566666654
No 408
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=63.39 E-value=6.5 Score=38.37 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHH
Q psy16898 172 GVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231 (324)
Q Consensus 172 G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~ 231 (324)
|-|++++++| ++|.+|+|+|+|+..++.+ |. +......-+..+.+.+...
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l------n~----G~~~i~e~~~~~~v~~~v~ 69 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL------NR----GESYIEEPDLDEVVKEAVE 69 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHH------hC----CcceeecCcHHHHHHHHHh
Confidence 5666666655 4789999999999988864 33 1345556666665555443
No 409
>PLN02740 Alcohol dehydrogenase-like
Probab=63.12 E-value=14 Score=35.47 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=31.3
Q ss_pred hccCCCEEEEEcCCCchhHHHH---Hh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPA---AR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~---a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+.+|++||=.|| |++++.+ |+ .|+ +|+++|.+++-++.+++
T Consensus 195 ~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3668999988865 5665544 44 577 79999999988887754
No 410
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.10 E-value=71 Score=29.56 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCH-HHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNP-DSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~-~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|+++|=.|++ |.++.. ++++|++|+.+|.+. ...+.+.+.++..+ .++.++.+|+.+
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g----~~~~~~~~Dv~d 73 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG----AKAVAVAGDISQ 73 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC----CeEEEEeCCCCC
Confidence 56778866665 445544 445799999998753 34444444444333 257888888865
No 411
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=62.96 E-value=33 Score=30.14 Aligned_cols=57 Identities=28% Similarity=0.237 Sum_probs=40.8
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++|-.| |+|.++..+++ .|++|+.++.++.....+...+...+ .++.++.+|+.+
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~d~~~ 63 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG----GNAQAFACDITD 63 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC----CcEEEEEcCCCC
Confidence 55676666 45777766655 68899999999988777766665433 258888888764
No 412
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=62.65 E-value=29 Score=30.78 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=40.3
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++| +-.|+|.++..+++ +|++|+.++.++...+.+.+.+...+ .++.++.+|+.+.
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 68 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG----GKAIGVAMDVTNE 68 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC----ceEEEEECCCCCH
Confidence 356777 44555677666554 68899999999987776666554433 2577888887553
No 413
>PRK06181 short chain dehydrogenase; Provisional
Probab=62.38 E-value=30 Score=30.87 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=39.1
Q ss_pred CEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+||-.| |+|.++..+++ +|++|++++.++...+.+.+.+...+ .++.++.+|+.+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG----GEALVVPTDVSDA 62 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence 3566444 56677776654 68899999999887776665555433 3578888887653
No 414
>PRK08265 short chain dehydrogenase; Provisional
Probab=62.33 E-value=83 Score=28.10 Aligned_cols=56 Identities=27% Similarity=0.248 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|-.| |+|.++..+++ .|++|+.++.++...+.+.+.+ + .++.++.+|+.+.
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G----ERARFIATDITDD 64 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CeeEEEEecCCCH
Confidence 356777666 45666666554 6899999999987554433221 2 2577888887653
No 415
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=62.07 E-value=70 Score=28.35 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|+ +|.++..++ ++|++|+.++.++. ...+.+.+...+ .++.++.+|+.+.
T Consensus 7 ~~k~vlVtGa-s~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~----~~~~~~~~D~~~~ 68 (260)
T PRK12823 7 AGKVVVVTGA-AQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAG----GEALALTADLETY 68 (260)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcC----CeEEEEEEeCCCH
Confidence 3567777774 455555554 47899999998864 333333333323 2477788887653
No 416
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.06 E-value=17 Score=34.75 Aligned_cols=44 Identities=34% Similarity=0.428 Sum_probs=31.4
Q ss_pred hccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+.+|++||=.||| +|.+++.+|+ .|+ +|+++|.+++..+.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 35688999888763 2334444555 577 89999999998887754
No 417
>PRK06196 oxidoreductase; Provisional
Probab=61.99 E-value=63 Score=29.93 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+++||=.| |+|.+|..+++ +|++|++++.++...+.+...+ . ++.++.+|+.+.
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-------~-~v~~~~~Dl~d~ 83 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-------D-GVEVVMLDLADL 83 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------h-hCeEEEccCCCH
Confidence 467788777 45777777665 6889999999987655443322 1 256777887654
No 418
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=61.90 E-value=33 Score=33.64 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=36.6
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
..+++=+ |.|.+|..+++ .|..|+.+|.+++.++.+++. + . .+.++.+|+.+
T Consensus 231 ~~~iiIi--G~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~----~---~-~~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIV--GGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEE----L---P-NTLVLHGDGTD 286 (453)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH----C---C-CCeEEECCCCC
Confidence 3456554 55788877776 477999999999988776542 1 1 36678888864
No 419
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.73 E-value=49 Score=27.58 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=51.9
Q ss_pred EEEEcCCCchhHHHH--HhcCCEEEEEeCCHHHHHHHHHHHHHhCCC-----CCCCeEEEeccHHHHHHHHHHHhhhhhc
Q psy16898 166 VLDVFAGVGPFSIPA--ARRGAIVAANDLNPDSYAWLQASIRLNERQ-----VKTPISATQKDARDFLQTDARAHLVRWS 238 (324)
Q Consensus 166 VLDl~~G~G~~al~~--a~~g~~V~avD~~~~a~~~a~~N~~~n~~~-----l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 238 (324)
|.=+|+|.++.++.. +.+|.+|+-...+++.++..+++-. |... ++.++.+ ..|..+.+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~-n~~~~~~~~l~~~i~~-t~dl~~a~~~---------- 69 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQ-NPKYLPGIKLPENIKA-TTDLEEALED---------- 69 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTS-ETTTSTTSBEETTEEE-ESSHHHHHTT----------
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCC-CCCCCCCcccCccccc-ccCHHHHhCc----------
Confidence 455667666655443 4478899999999988888776543 3211 1234543 4566554432
Q ss_pred ccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cch
Q psy16898 239 QSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTR 273 (324)
Q Consensus 239 ~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~ 273 (324)
.|.|++-.|..+. ++++.+.. +++
T Consensus 70 -----------ad~IiiavPs~~~~~~~~~l~~~l~~ 95 (157)
T PF01210_consen 70 -----------ADIIIIAVPSQAHREVLEQLAPYLKK 95 (157)
T ss_dssp ------------SEEEE-S-GGGHHHHHHHHTTTSHT
T ss_pred -----------ccEEEecccHHHHHHHHHHHhhccCC
Confidence 7999999888765 47777776 443
No 420
>PRK05599 hypothetical protein; Provisional
Probab=61.60 E-value=87 Score=27.77 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=38.7
Q ss_pred EEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 165 LVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++|-.|+ +++++..+|+ +|++|+.++.+++.++.+.+.++..+ - +.+.++..|+.+.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~--~-~~~~~~~~Dv~d~ 61 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG--A-TSVHVLSFDAQDL 61 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc--C-CceEEEEcccCCH
Confidence 3554555 4566666654 58899999999988887776666544 2 2477888887654
No 421
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.53 E-value=83 Score=30.04 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=59.8
Q ss_pred EEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCC-----CeEEEeccHHHHHHHHHHHhhhh
Q psy16898 166 VLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKT-----PISATQKDARDFLQTDARAHLVR 236 (324)
Q Consensus 166 VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~-----~v~~~~~D~~~~~~~~~~~~~~~ 236 (324)
|.-+|+ |.|+-.+| +.|..|.-.-.+++.++...++ +.|.+.+++ ++ ....|..+.+.
T Consensus 4 I~ViGa--GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~-~~N~~yLp~i~lp~~l-~at~Dl~~a~~--------- 70 (329)
T COG0240 4 IAVIGA--GSWGTALAKVLARNGHEVRLWGRDEEIVAEINET-RENPKYLPGILLPPNL-KATTDLAEALD--------- 70 (329)
T ss_pred EEEEcC--ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc-CcCccccCCccCCccc-ccccCHHHHHh---------
Confidence 444444 44544444 4677999999999988887665 445432331 11 12233333322
Q ss_pred hcccCCCCCCCCcccEEEECChhhhH-HHHHHHhc-cchhhcCCCCCCCEEEE-EEcccCCChhHHhHhhhcCCCceEE
Q psy16898 237 WSQSEGNSTGGTAVARVIMNLPATAV-EYVRYLKV-LTREEFGKLSRPPVLYL-YCFLPKMDLETKKKIKSYDPSYATL 312 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~npP~~a~-~~l~~~~~-l~~~~~~~~~~~g~vh~-y~f~~~~~~~~~~~v~~y~~~~~~~ 312 (324)
..|.|++-.|..+. +.++.+.. +++ +-.+++| -.|-+.......+.++...+...+.
T Consensus 71 ------------~ad~iv~avPs~~~r~v~~~l~~~l~~-------~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~ 130 (329)
T COG0240 71 ------------GADIIVIAVPSQALREVLRQLKPLLLK-------DAIIVSATKGLEPETGRLLSEIIEEELPDNPIA 130 (329)
T ss_pred ------------cCCEEEEECChHHHHHHHHHHhhhccC-------CCeEEEEeccccCCCcchHHHHHHHHcCCCeEE
Confidence 28999999998542 23433332 222 2234443 2454444445555555444433333
No 422
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.21 E-value=20 Score=31.68 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcCCC-chhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAGV-GPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G~-G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
+.++++||..|+|. |...+.+++ .|.+|++++.++...+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 46789999999885 555666666 57899999999987777643
No 423
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.00 E-value=40 Score=33.09 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCH-HHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNP-DSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~-~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+++|+=+|+|. .|+.+|+ .|+.|+++|.++ ..++...+.+...+ ++++.+|..+
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~------~~~~~~~~~~ 63 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELG------IELVLGEYPE 63 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC------CEEEeCCcch
Confidence 467787777666 5544444 699999999985 33333223333333 4566666554
No 424
>PRK07831 short chain dehydrogenase; Provisional
Probab=60.80 E-value=1.2e+02 Score=26.89 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCchhHHH----HHhcCCEEEEEeCCHHHHHHHHHHHHHh-CCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIP----AARRGAIVAANDLNPDSYAWLQASIRLN-ERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~----~a~~g~~V~avD~~~~a~~~a~~N~~~n-~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.|+...+++.. ++++|++|+.++.++..++.+.+.++.. + - .++.++.+|+.+
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~Dl~~ 80 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG--L-GRVEAVVCDVTS 80 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC--C-ceEEEEEccCCC
Confidence 467788777531134444 4457899999999998887776666542 2 1 257788888765
No 425
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=60.69 E-value=45 Score=27.76 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=49.5
Q ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh--
Q psy16898 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT-- 260 (324)
Q Consensus 183 ~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~-- 260 (324)
+--.++|-..-.+..+.+++.+...+ +. +++++.+...-+-+...+. ...+|.||+||-..
T Consensus 16 Rep~iYG~~tl~~i~~~l~~~a~~~g--~~--v~~~QSN~Egelid~I~~a-------------~~~~dgiIINpga~TH 78 (140)
T cd00466 16 REPEIYGTTTLADIEALLRELAAELG--VE--VEFFQSNHEGELIDWIHEA-------------RDGADGIIINPGAYTH 78 (140)
T ss_pred CCCCcCCcCCHHHHHHHHHHHHHHcC--CE--EEEEeeCcHHHHHHHHHHh-------------hccCcEEEEcchHHHH
Confidence 33467777776777777777777777 65 8898888765544433321 13489999999875
Q ss_pred -hHHHHHHHhccc
Q psy16898 261 -AVEYVRYLKVLT 272 (324)
Q Consensus 261 -a~~~l~~~~~l~ 272 (324)
+....+++..+.
T Consensus 79 tSvAi~DAl~~~~ 91 (140)
T cd00466 79 TSIALRDALAAVS 91 (140)
T ss_pred HHHHHHHHHHcCC
Confidence 456777776643
No 426
>KOG0725|consensus
Probab=60.69 E-value=1.3e+02 Score=27.64 Aligned_cols=62 Identities=15% Similarity=0.067 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCC-CCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQV-KTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l-~~~v~~~~~D~~~~ 225 (324)
.|+++|--|+..| .++..+++.|++|+-.+.+++.++..+.-....+ . ..++..+.+|+.+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLG--YTGGKVLAIVCDVSKE 72 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCCeeEEEECcCCCH
Confidence 5667777776555 6678888899999999999999888877766555 3 24688888888643
No 427
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=60.28 E-value=38 Score=30.67 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=39.5
Q ss_pred HHHhcCCEEEEEeCCH--HHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEEC
Q psy16898 179 PAARRGAIVAANDLNP--DSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMN 256 (324)
Q Consensus 179 ~~a~~g~~V~avD~~~--~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~n 256 (324)
.++++|.+|.-+|-+| ...+|. +|+...+. .++++.+...+-...+.....+. . ...||+|++|
T Consensus 25 ~la~~G~~V~lIDaDpn~pl~~W~-~~a~~~~~-~~~~~~V~~~~e~~~l~~~~e~a-----~-------~~~~d~VlvD 90 (231)
T PF07015_consen 25 ELAARGARVALIDADPNQPLAKWA-ENAQRPGA-WPDRIEVYEADELTILEDAYEAA-----E-------ASGFDFVLVD 90 (231)
T ss_pred HHHHCCCeEEEEeCCCCCcHHHHH-HhccccCC-CCCCeeEEeccchhhHHHHHHHH-----H-------hcCCCEEEEe
Confidence 3445789998888766 466774 44443331 55567776655443333322210 0 1238999999
Q ss_pred ChhhhH
Q psy16898 257 LPATAV 262 (324)
Q Consensus 257 pP~~a~ 262 (324)
++..+-
T Consensus 91 leG~as 96 (231)
T PF07015_consen 91 LEGGAS 96 (231)
T ss_pred CCCCCc
Confidence 876443
No 428
>KOG2352|consensus
Probab=60.23 E-value=14 Score=36.96 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=50.7
Q ss_pred hhccCCC-EEEEEcCCCchhHHHHHhcCC-EEEEEeCCHHHHHHHHH-HHHHhCCCCCCCeEEEeccHHHHHHH
Q psy16898 158 KEVREGD-LVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQA-SIRLNERQVKTPISATQKDARDFLQT 228 (324)
Q Consensus 158 ~~~~~g~-~VLDl~~G~G~~al~~a~~g~-~V~avD~~~~a~~~a~~-N~~~n~~~l~~~v~~~~~D~~~~~~~ 228 (324)
..+.+.. +++-+|||--.++..+-+.|. .|+.+|+|+-+++.+.. |++.+ .-..+..+|+.....+
T Consensus 43 ~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-----~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 43 KYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-----PEMQMVEMDMDQLVFE 111 (482)
T ss_pred HhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-----cceEEEEecchhccCC
Confidence 3455666 999999999999999999887 89999999999988764 33222 2477888887765443
No 429
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=60.14 E-value=98 Score=27.43 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+++|-.|+ +|.++..+++ .|++|++++.++. +...+.+...+ .++.++..|+.+
T Consensus 9 ~~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~----~~~~~~~~Dl~~ 68 (253)
T PRK08993 9 EGKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG----RRFLSLTADLRK 68 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC----CeEEEEECCCCC
Confidence 4667777775 5666666655 6899999987643 22223333223 257778888754
No 430
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=59.60 E-value=20 Score=33.29 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=34.1
Q ss_pred hccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898 159 EVREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 159 ~~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~ 201 (324)
.+.+|++||=.| .|+|.+++.+|+ .|++|++++.+++-.+.++
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 366899998777 357777888887 6889999999998777764
No 431
>PRK06114 short chain dehydrogenase; Provisional
Probab=58.95 E-value=1.2e+02 Score=26.74 Aligned_cols=58 Identities=21% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPD-SYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~-a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.| |+|.++..+++ .|++|+.++.+.. .++.+.+.+...+ .++.++..|+.+
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~ 69 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAG----RRAIQIAADVTS 69 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CceEEEEcCCCC
Confidence 466777665 66677777665 6889999998653 3444444444323 257778888754
No 432
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=58.88 E-value=7 Score=38.14 Aligned_cols=20 Identities=15% Similarity=0.037 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCchhHHHHHh
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR 182 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~ 182 (324)
.-+|+|+|||+|..++.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 44899999999999987754
No 433
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=58.86 E-value=41 Score=30.96 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.+++||=.| |+|.+|..+++ +|.+|++++.++.............+ ...+++++.+|+.+
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG--AKERLHLFKANLLE 66 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC--CCCceEEEeccccC
Confidence 356676655 47888877765 58899988876543322222111112 22368899999875
No 434
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=58.75 E-value=41 Score=30.24 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=17.1
Q ss_pred hHHHHHhcCCEEEEEeCCHHH--HHHH
Q psy16898 176 FSIPAARRGAIVAANDLNPDS--YAWL 200 (324)
Q Consensus 176 ~al~~a~~g~~V~avD~~~~a--~~~a 200 (324)
++..++++|.+|..+|.+|.. ..++
T Consensus 22 LA~~la~~G~~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 22 LCAALASDGKRVALFEADENRPLTRWK 48 (231)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHH
Confidence 345556688899999997753 4444
No 435
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=58.58 E-value=20 Score=34.25 Aligned_cols=43 Identities=42% Similarity=0.407 Sum_probs=30.5
Q ss_pred ccCCCEEEEEcCC-CchhHHHHHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVFAG-VGPFSIPAAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
+.+|++||=.|+| +|.+++.+|+ .|+ +|+++|.+++-.+.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 5678888887753 2333444455 587 79999999998887753
No 436
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=58.29 E-value=11 Score=34.10 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=33.5
Q ss_pred CEEEEEcCCCchhHHHHHh--c--------CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR--R--------GAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~--~--------g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
-+|+++|+|.|.++.-+++ + ..+++-||.||...+.-++.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4999999999999988776 1 24899999999988887777654
No 437
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=58.23 E-value=92 Score=27.72 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|+ +|.++..++ +.|++|+.++.++..++.+.+.. + .++.++.+|+.+.
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~~ 64 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G----DHVLVVEGDVTSY 64 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CcceEEEccCCCH
Confidence 4667777775 455565544 46899999999987665543321 2 2467788887553
No 438
>PRK05717 oxidoreductase; Validated
Probab=58.18 E-value=75 Score=28.15 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|+++|-.|+ +|.++..+++ .|++|+.++.++.......+. +..++.++.+|+.+.
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~~~ 68 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA-------LGENAWFIAMDVADE 68 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH-------cCCceEEEEccCCCH
Confidence 4677886664 5666666554 688999999887644332221 112577888887653
No 439
>PRK12743 oxidoreductase; Provisional
Probab=57.91 E-value=1.4e+02 Score=26.52 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEe-CCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAAND-LNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD-~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++||=.|+ +|.++..+++ .|++|+.+. .++...+.+.+.++.++ .++.++..|..+.
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 64 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG----VRAEIRQLDLSDL 64 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC----CceEEEEccCCCH
Confidence 356777775 5667777765 688888774 46666666655555544 3588888887653
No 440
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.83 E-value=1e+02 Score=28.00 Aligned_cols=59 Identities=17% Similarity=0.020 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCC-chhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGV-GPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|=.|++. ++++..+| +.|++|+..+.+....+.+++-....+ .. .++..|+.+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~----~~-~~~~~Dv~d~ 67 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG----SD-YVYELDVSKP 67 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC----Cc-eEEEecCCCH
Confidence 467888888753 45555554 479999999988643333333222222 12 4677787654
No 441
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=57.80 E-value=23 Score=30.48 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=28.5
Q ss_pred EEEEcCCCc--hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 166 VLDVFAGVG--PFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 166 VLDl~~G~G--~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
|.=+|+|+= .++..+|..|..|+.+|.|+++++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 445666542 34455566899999999999999988887764
No 442
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.56 E-value=1e+02 Score=27.62 Aligned_cols=58 Identities=10% Similarity=-0.095 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCc-hh----HHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVG-PF----SIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G-~~----al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+++|=.|++.| ++ +..+++.|++|+..+.++..-+.+++-....+ ...++..|+.+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g-----~~~~~~~Dv~~ 69 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG-----CNFVSELDVTN 69 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC-----CceEEEccCCC
Confidence 4678888888653 34 44456679999888877533233333222212 12345677755
No 443
>PRK05855 short chain dehydrogenase; Validated
Probab=57.49 E-value=1.1e+02 Score=30.67 Aligned_cols=59 Identities=24% Similarity=0.176 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.+.++|=.| |+|.++..+++ +|++|+.++.++...+.+.+.++..+ . ++.++.+|+.+.
T Consensus 314 ~~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~Dv~~~ 376 (582)
T PRK05855 314 SGKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--A--VAHAYRVDVSDA 376 (582)
T ss_pred CCCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--C--eEEEEEcCCCCH
Confidence 345666555 47777766554 68899999999988777666665444 2 588888888654
No 444
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=57.33 E-value=1.2e+02 Score=26.98 Aligned_cols=59 Identities=8% Similarity=-0.019 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEe-CCHHHHHHHHHHHHH-hCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAAND-LNPDSYAWLQASIRL-NERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD-~~~~a~~~a~~N~~~-n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|=.|++ |.++..++ +.|++|+.+. .+++.++...+.++. .+ .++.++..|+.+.
T Consensus 7 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 71 (260)
T PRK08416 7 KGKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYG----IKAKAYPLNILEP 71 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence 46677766644 55555544 4789888774 456655554444432 23 2578888888653
No 445
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.10 E-value=96 Score=27.61 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCC-chhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGV-GPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+++|-.|++. ++++..+| +.|++|+.++.+....+.+++ ..+ .++.++..|+.+
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~---~~~----~~~~~~~~Dl~~ 66 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK---LVD----EEDLLVECDVAS 66 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh---hcc----CceeEEeCCCCC
Confidence 467888888764 56665555 478999998887543322222 112 246778888854
No 446
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=57.07 E-value=1.3e+02 Score=26.62 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|++ |.++..++ +.|++|+.++.+ ...+.+.+.+...+ .++.++.+|+.+
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~D~~~ 74 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEG----RKVTFVQVDLTK 74 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcC----CceEEEEcCCCC
Confidence 46778777764 45555554 478999999887 33333433333222 257888888765
No 447
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.93 E-value=1.1e+02 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.014 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCC-chhHHHHHh----cCCEEEEEeCCH---HHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGV-GPFSIPAAR----RGAIVAANDLNP---DSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~al~~a~----~g~~V~avD~~~---~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|+++|-.|++. ++++..+|+ .|++|+.++.+. ..++.+.+.+ .+ .++.++..|+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~--~~----~~~~~~~~Dv~d~ 71 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL--EG----QESLLLPCDVTSD 71 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc--CC----CceEEEecCCCCH
Confidence 467899999873 777766665 688998886543 3333332211 12 2577788887553
No 448
>PRK09072 short chain dehydrogenase; Provisional
Probab=56.75 E-value=41 Score=30.07 Aligned_cols=58 Identities=19% Similarity=0.039 Sum_probs=38.5
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++.++|=.|++ |.++..++ ++|++|++++.++..++.+..-+. .+ .++.++..|..+.
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~----~~~~~~~~D~~d~ 65 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-YP----GRHRWVVADLTSE 65 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh-cC----CceEEEEccCCCH
Confidence 35566666644 55555544 478999999999887776654442 12 3678888887653
No 449
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.64 E-value=28 Score=32.32 Aligned_cols=42 Identities=21% Similarity=0.010 Sum_probs=32.5
Q ss_pred EEEEEcCCC--chhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 165 LVLDVFAGV--GPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 165 ~VLDl~~G~--G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
+|.=+|+|+ +.++..+++.|..|+..|.++++++.+++.+..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~ 50 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEK 50 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH
Confidence 677788873 455566677899999999999999987766543
No 450
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=56.63 E-value=24 Score=33.37 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=28.4
Q ss_pred ccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeC---CHHHHHHHH
Q psy16898 160 VREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDL---NPDSYAWLQ 201 (324)
Q Consensus 160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~---~~~a~~~a~ 201 (324)
..+|++||=.||| +|.+++.+|+ .|++|++++. ++.-.+.++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 3578899888764 2444455555 5779999987 676666654
No 451
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.57 E-value=46 Score=26.91 Aligned_cols=52 Identities=25% Similarity=0.211 Sum_probs=36.0
Q ss_pred hccCCCEEEEEcCCCc-hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 159 EVREGDLVLDVFAGVG-PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G-~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
....| +|+++|-|-= ..+-.++++|+.|+++|+++. ++. ..+.++..|+++-
T Consensus 11 e~~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-------~g~~~v~DDitnP 63 (129)
T COG1255 11 ENARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-------EGLRFVVDDITNP 63 (129)
T ss_pred HhcCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-------ccceEEEccCCCc
Confidence 34455 8999976643 235566778999999999986 222 2467888888763
No 452
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=56.13 E-value=62 Score=30.53 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=38.3
Q ss_pred cCCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
..+++||=.| |+|.+|..+++ +|.+|++++.++........... . . .+++++.+|+.+.
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~--~-~~~~~~~~Dl~~~ 70 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--E--G-DRLRLFRADLQEE 70 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--c--C-CeEEEEECCCCCH
Confidence 3567888776 47888877766 68899998877654333222221 1 1 2588899998653
No 453
>PRK08628 short chain dehydrogenase; Provisional
Probab=56.10 E-value=1.2e+02 Score=26.72 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+|+++|=.|+ +|.++..+++ +|++|+.++.++...+. .+.+...+ .++.++..|+.+.
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~-~~~~~~~~----~~~~~~~~D~~~~ 67 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDDEF-AEELRALQ----PRAEFVQVDLTDD 67 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhHHH-HHHHHhcC----CceEEEEccCCCH
Confidence 4567776665 5667666654 68899999988876633 33333333 2578888888553
No 454
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.70 E-value=1.1e+02 Score=27.77 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=34.5
Q ss_pred CCCEEEEEcCC-CchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAG-VGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G-~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|++ +++++..+|+ .|++|+.+..+....+.+++..+. +. ...++..|+.+
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~----~~-~~~~~~~Dl~~ 71 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE----LG-AFVAGHCDVTD 71 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh----cC-CceEEecCCCC
Confidence 46788888886 4667666664 689998876654333333332221 22 24567778754
No 455
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=55.65 E-value=1.4e+02 Score=26.06 Aligned_cols=57 Identities=18% Similarity=0.120 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+|+++|=.|++ |.++..+++ +|++|+.++.++. ..+.+.+.. ...++.++..|+.+.
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~----~~~~~~~~~~D~~~~ 64 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEA----LGRRFLSLTADLSDI 64 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHh----cCCceEEEECCCCCH
Confidence 46778877774 556666554 6889999987652 223333332 223578888887653
No 456
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=55.60 E-value=23 Score=32.61 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=33.8
Q ss_pred ccCCCEEEEEc--CCCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 160 VREGDLVLDVF--AGVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 160 ~~~g~~VLDl~--~G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
+.+|++||=.| .|+|.+++.+|+ .|++|++++.+++-.+.+++
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888888776 467777777777 68899999999987777754
No 457
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.38 E-value=97 Score=27.98 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCC-chhH----HHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGV-GPFS----IPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~a----l~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|+++|=.|++. ++++ ..+++.|++|+.++.+...-+.++ .+... .. .+.++..|+.+
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~-~~~~~---~~-~~~~~~~Dl~~ 67 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE-EFAAQ---LG-SDIVLPCDVAE 67 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHH-HHHhc---cC-CceEeecCCCC
Confidence 467888888865 2544 455557899988887743222222 22211 11 35567778755
No 458
>PRK07832 short chain dehydrogenase; Provisional
Probab=55.35 E-value=1e+02 Score=27.73 Aligned_cols=51 Identities=20% Similarity=0.088 Sum_probs=32.5
Q ss_pred CCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 171 AGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 171 ~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.|+|.++..+++ +|+.|+.++.+++.++.+.+.+...+ -. .+.++.+|+.+
T Consensus 7 Gas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~--~~-~~~~~~~D~~~ 61 (272)
T PRK07832 7 GAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG--GT-VPEHRALDISD 61 (272)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CC-cceEEEeeCCC
Confidence 456677766554 68899999999887766655554333 11 24456667654
No 459
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.32 E-value=47 Score=33.35 Aligned_cols=40 Identities=30% Similarity=0.257 Sum_probs=28.6
Q ss_pred hccCCCEEEEEcCCCchhHHH--HHhcCCEEEEEeCCHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIP--AARRGAIVAANDLNPDSYA 198 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~--~a~~g~~V~avD~~~~a~~ 198 (324)
.+.+|++|+=+|.|.-+.+.. +.+.|+.|++.|.++...+
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~ 49 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALR 49 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 345788998888776555544 3457899999998876543
No 460
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=55.15 E-value=1.5e+02 Score=26.17 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++++|=.| |+|.++..+++ +|++|+.++.++...+.+.+.. + .++.++.+|+.+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~ 63 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---G----PAAIAVSLDVTR 63 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---C----CceEEEEccCCC
Confidence 55677666 66777777665 6889999999987765543322 2 247788888754
No 461
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=54.72 E-value=1.8e+02 Score=26.95 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=62.2
Q ss_pred ccCCCEEEEEcCCCchhHHHHHh----cC--CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHh
Q psy16898 160 VREGDLVLDVFAGVGPFSIPAAR----RG--AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH 233 (324)
Q Consensus 160 ~~~g~~VLDl~~G~G~~al~~a~----~g--~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~ 233 (324)
+..+...+|+|+|+..-+..+.. +| .+-+.+|++...++...+.+...-..++ +.-+++|...-+.....
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~--v~~l~~~~~~~La~~~~-- 151 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE--VNALCGDYELALAELPR-- 151 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe--EeehhhhHHHHHhcccC--
Confidence 44678999999999998877655 34 3889999999887765555544331143 66777776655444321
Q ss_pred hhhhcccCCCCCCCCcccEEEE-------CC-hhhhHHHHHHHhc-cchhh
Q psy16898 234 LVRWSQSEGNSTGGTAVARVIM-------NL-PATAVEYVRYLKV-LTREE 275 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~fD~Vi~-------np-P~~a~~~l~~~~~-l~~~~ 275 (324)
.-..+++ |+ |.-...|+..+++ +.++.
T Consensus 152 ---------------~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 152 ---------------GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGD 187 (321)
T ss_pred ---------------CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcc
Confidence 0111111 33 4445678888888 77764
No 462
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.65 E-value=97 Score=26.92 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEE-eCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAAN-DLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~av-D~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|=.| |+|.++..+++ +|++|+.+ +.++...+.+...+...+ .++.++..|+.+.
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~ 67 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG----GDAIAVKADVSSE 67 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC----CeEEEEECCCCCH
Confidence 34566555 56777776654 68899888 998887776666555433 2588888988653
No 463
>PRK08278 short chain dehydrogenase; Provisional
Probab=54.57 E-value=1.1e+02 Score=27.68 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHH-------HHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDS-------YAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a-------~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|=.|| +|.++..+++ +|++|+.++.+... ++.+.+.+..++ .++.++.+|+.+.
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~D~~~~ 74 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG----GQALPLVGDVRDE 74 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcC----CceEEEEecCCCH
Confidence 4567776665 5666666554 68999999887542 333333333333 2578888887553
No 464
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=54.54 E-value=25 Score=32.93 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=34.7
Q ss_pred hccCCCEEEEEcC--CCchhHHHHHh-cCCEEEEEeCCHHHHHHHHH
Q psy16898 159 EVREGDLVLDVFA--GVGPFSIPAAR-RGAIVAANDLNPDSYAWLQA 202 (324)
Q Consensus 159 ~~~~g~~VLDl~~--G~G~~al~~a~-~g~~V~avD~~~~a~~~a~~ 202 (324)
.+.+|++||=.|+ |+|.+++.+|+ .|++|+++..+++-.+.+++
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 3668999998775 57777777777 68899999999887777654
No 465
>PRK08324 short chain dehydrogenase; Validated
Probab=54.50 E-value=1.2e+02 Score=31.93 Aligned_cols=57 Identities=23% Similarity=0.235 Sum_probs=38.4
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+|++||-.|+ +|.++..+++ .|++|+.+|.++...+.+...+. . . .++.++.+|+.+
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~--~--~-~~v~~v~~Dvtd 481 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG--G--P-DRALGVACDVTD 481 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh--c--c-CcEEEEEecCCC
Confidence 4677776654 5666666554 68899999999987766554332 1 1 257788888754
No 466
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=54.46 E-value=24 Score=32.17 Aligned_cols=40 Identities=38% Similarity=0.374 Sum_probs=28.5
Q ss_pred cCCCEEEEEcCCCchhHHH---HHh-cCC-EEEEEeCCHHHHHHHHH
Q psy16898 161 REGDLVLDVFAGVGPFSIP---AAR-RGA-IVAANDLNPDSYAWLQA 202 (324)
Q Consensus 161 ~~g~~VLDl~~G~G~~al~---~a~-~g~-~V~avD~~~~a~~~a~~ 202 (324)
.+|++||=.|+ |++++. +|+ .|+ .|+++|.++.-.+.+++
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 47888888865 556544 444 577 49999999987777654
No 467
>PHA02518 ParA-like protein; Provisional
Probab=54.45 E-value=27 Score=30.08 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHhcCCEEEEEeCCHH
Q psy16898 178 IPAARRGAIVAANDLNPD 195 (324)
Q Consensus 178 l~~a~~g~~V~avD~~~~ 195 (324)
..++++|.+|..+|.++.
T Consensus 23 ~~la~~g~~vlliD~D~q 40 (211)
T PHA02518 23 SWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred HHHHhCCCeEEEEeCCCC
Confidence 345557899999999885
No 468
>PRK05993 short chain dehydrogenase; Provisional
Probab=54.27 E-value=91 Score=28.17 Aligned_cols=51 Identities=24% Similarity=0.098 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++||-.|| +|.+|..+++ +|++|++++.+++.++.++. .+ ++++.+|+.+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~------~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG------LEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC------ceEEEccCCC
Confidence 557776665 5777766654 68899999999876654321 23 5567777755
No 469
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=53.82 E-value=53 Score=28.84 Aligned_cols=55 Identities=16% Similarity=0.035 Sum_probs=38.3
Q ss_pred EEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 165 LVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++|=.| |+|.++..+++ +|.+|++++.++...+.+...+...+ .++.++.+|..+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG----GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CceEEEECCCCC
Confidence 444444 66888877765 58899999999877766655544333 257888888765
No 470
>PRK06701 short chain dehydrogenase; Provisional
Probab=53.73 E-value=1.2e+02 Score=27.71 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPD-SYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~-a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|-.|+ +|.++..++ ++|++|+.++.++. ..+.....++..+ .++.++.+|+.+
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~ 107 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG----VKCLLIPGDVSD 107 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC----CeEEEEEccCCC
Confidence 4667877775 555555544 47899999988753 3333333333333 257788888754
No 471
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.55 E-value=1.1e+02 Score=27.44 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=36.4
Q ss_pred CCCEEEEEcCC-CchhHHHHHh----cCCEEEEEeCCH--HHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAG-VGPFSIPAAR----RGAIVAANDLNP--DSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G-~G~~al~~a~----~g~~V~avD~~~--~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.++++|-.|+| +++++..+|+ .|++|+..+.+. +.++.+.+.+ + .++.++..|+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~----~~~~~~~~Dv~~~ 69 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P----EPAPVLELDVTNE 69 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C----CCCcEEeCCCCCH
Confidence 46789999985 6777777665 689999988664 3333332211 2 2456777887553
No 472
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=53.38 E-value=1.5e+02 Score=25.80 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEe-CCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAAND-LNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD-~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|-.| |+|.++..+++ +|+.|+.+. .++...+...+.+...+ .++.++..|+.+.
T Consensus 5 ~~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~ 68 (247)
T PRK12935 5 NGKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG----HDVYAVQADVSKV 68 (247)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC----CeEEEEECCCCCH
Confidence 367888888 57888887665 688887654 34555444333333333 2588888888654
No 473
>KOG1205|consensus
Probab=53.11 E-value=1.3e+02 Score=28.07 Aligned_cols=62 Identities=21% Similarity=0.181 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCc---hhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVG---PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G---~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|++|+=-||-.| ..+..++++|++++-+-...+.++...+-++..+ -.+++..+.+|+.+.
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~--~~~~v~~~~~Dvs~~ 75 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLG--SLEKVLVLQLDVSDE 75 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhC--CcCccEEEeCccCCH
Confidence 5788999998777 4566777789988888888888888877776665 222589999998664
No 474
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.77 E-value=31 Score=36.55 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=35.6
Q ss_pred CEEEEEcCCC--chhHHHHHhcCCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 164 DLVLDVFAGV--GPFSIPAARRGAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 164 ~~VLDl~~G~--G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
.+|.-+|+|+ ..++..+|..|..|+.+|.++++++.+...+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4789999998 566777788899999999999999887766543
No 475
>PRK07041 short chain dehydrogenase; Provisional
Probab=52.60 E-value=88 Score=27.05 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=33.6
Q ss_pred CCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 171 AGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 171 ~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|+|.++..+++ +|++|++++.++..++.....++. + .+++++.+|+.+.
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~----~~~~~~~~Dl~~~ 57 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G----APVRTAALDITDE 57 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C----CceEEEEccCCCH
Confidence 356666666554 689999999998776655544432 2 2577888887654
No 476
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=52.47 E-value=1.6e+02 Score=25.75 Aligned_cols=55 Identities=24% Similarity=0.155 Sum_probs=36.9
Q ss_pred EEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 165 LVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 165 ~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
++|=.| |+|.++..+++ .|++|+.++.++...+.+.+.+...+ .++.++.+|+.+
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~Dl~~ 60 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG----GKAVAYKLDVSD 60 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC----CeEEEEEcCCCC
Confidence 344455 46777766554 68899999999877666555554334 257888888754
No 477
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=52.14 E-value=1.8e+02 Score=28.08 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCCEEEEEcCC-Cch-hHHHHHhcCC-EEEEEeCC
Q psy16898 162 EGDLVLDVFAG-VGP-FSIPAARRGA-IVAANDLN 193 (324)
Q Consensus 162 ~g~~VLDl~~G-~G~-~al~~a~~g~-~V~avD~~ 193 (324)
.+.+|+=+||| .|. ++..+++.|. +++-+|-+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45678888886 454 3444555676 88888876
No 478
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.10 E-value=1.1e+02 Score=29.89 Aligned_cols=80 Identities=23% Similarity=0.185 Sum_probs=50.7
Q ss_pred CEEEEEcCCCchhHHHHH----hcC-CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH--HHHHHHHhhhh
Q psy16898 164 DLVLDVFAGVGPFSIPAA----RRG-AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF--LQTDARAHLVR 236 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a----~~g-~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~--~~~~~~~~~~~ 236 (324)
.+||=+|| |..|..+| +.+ .+|+..|.+++..+.+..+.. .++++...|+.+. +.+...
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------~~v~~~~vD~~d~~al~~li~----- 67 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------GKVEALQVDAADVDALVALIK----- 67 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------ccceeEEecccChHHHHHHHh-----
Confidence 46788888 55554444 456 599999999988877755432 2577788887664 333332
Q ss_pred hcccCCCCCCCCcccEEEECC-hhhhHHHHHHHh
Q psy16898 237 WSQSEGNSTGGTAVARVIMNL-PATAVEYVRYLK 269 (324)
Q Consensus 237 ~~~~~~~~~~~~~fD~Vi~np-P~~a~~~l~~~~ 269 (324)
.+|.||.=. |.....++++..
T Consensus 68 ------------~~d~VIn~~p~~~~~~i~ka~i 89 (389)
T COG1748 68 ------------DFDLVINAAPPFVDLTILKACI 89 (389)
T ss_pred ------------cCCEEEEeCCchhhHHHHHHHH
Confidence 268776654 444555665553
No 479
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=52.05 E-value=1.3e+02 Score=31.73 Aligned_cols=60 Identities=23% Similarity=0.155 Sum_probs=40.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|+ +|.++..+++ +|++|++++.++...+.+...+.... -.+++.++.+|+.+
T Consensus 413 ~gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~--~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 413 ARRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQF--GAGRAVALKMDVTD 476 (676)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhc--CCCcEEEEECCCCC
Confidence 4667776654 5777766654 68999999999987776655544221 11256778888765
No 480
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.96 E-value=1.7e+02 Score=25.84 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCC-chhHHHHH----hcCCEEEEEeCC------------HHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGV-GPFSIPAA----RRGAIVAANDLN------------PDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~-G~~al~~a----~~g~~V~avD~~------------~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
.++++|=.|++. |.++..++ ++|++|+.++.+ +.... +...+...+ .++.++..|+.+
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~D~~~ 78 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYG----VRCEHMEIDLSQ 78 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcC----CeEEEEECCCCC
Confidence 356788888753 56665555 468899999876 33333 333333223 358888999865
Q ss_pred H
Q psy16898 225 F 225 (324)
Q Consensus 225 ~ 225 (324)
.
T Consensus 79 ~ 79 (256)
T PRK12748 79 P 79 (256)
T ss_pred H
Confidence 3
No 481
>PRK10904 DNA adenine methylase; Provisional
Probab=51.96 E-value=17 Score=33.59 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=32.9
Q ss_pred HHHhhccCCCEEEEEcCCCchhHHHHHhcCCEEEEEeCCHHHHHH
Q psy16898 155 RVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199 (324)
Q Consensus 155 ~~~~~~~~g~~VLDl~~G~G~~al~~a~~g~~V~avD~~~~a~~~ 199 (324)
.++..++...+.+|.|||.|.+.+... ..+++.+|+|++.+..
T Consensus 20 ~i~~~~P~~~~yvEPF~GggaV~l~~~--~~~~ilND~n~~Lin~ 62 (271)
T PRK10904 20 DIKRHLPKGECLIEPFVGAGSVFLNTD--FSRYILADINSDLISL 62 (271)
T ss_pred HHHHhCCCCCcEEeccCCcceeeEecC--CCeEEEEeCCHHHHHH
Confidence 455666666789999999999998652 2467889999987653
No 482
>PRK07074 short chain dehydrogenase; Provisional
Probab=51.45 E-value=1.5e+02 Score=26.15 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=35.3
Q ss_pred CEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++|=.|+ +|.++..++ ++|++|++++.++...+.+.+.+ ++ .++.++..|+.+.
T Consensus 3 k~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~--~~----~~~~~~~~D~~~~ 61 (257)
T PRK07074 3 RTALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL--GD----ARFVPVACDLTDA 61 (257)
T ss_pred CEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cC----CceEEEEecCCCH
Confidence 45555554 445666655 46889999999987665554433 22 1477888887654
No 483
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=51.28 E-value=80 Score=26.46 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=46.7
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh---h
Q psy16898 185 AIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT---A 261 (324)
Q Consensus 185 ~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~---a 261 (324)
-.++|-..-.+..+.+++-++..+ +. +.|++.+...-+-+...+. ...+|.||+||-.. +
T Consensus 20 p~iYG~~tl~~i~~~~~~~a~~~g--~~--v~~~QSN~EGelId~I~~a-------------~~~~dgiiINpga~THtS 82 (146)
T PRK05395 20 PEIYGSTTLADIEALLEEEAAELG--VE--LEFFQSNHEGELIDRIHEA-------------RDGADGIIINPGAYTHTS 82 (146)
T ss_pred CCcCCCCCHHHHHHHHHHHHHHcC--CE--EEEEeeCcHHHHHHHHHhc-------------ccCCcEEEECchHHHHHH
Confidence 356666666666667777777667 64 8898888765544433321 13489999999875 4
Q ss_pred HHHHHHHhcc
Q psy16898 262 VEYVRYLKVL 271 (324)
Q Consensus 262 ~~~l~~~~~l 271 (324)
....+++...
T Consensus 83 iAl~DAl~~~ 92 (146)
T PRK05395 83 VALRDALAAV 92 (146)
T ss_pred HHHHHHHHcC
Confidence 5677777664
No 484
>PRK07201 short chain dehydrogenase; Provisional
Probab=51.21 E-value=1.2e+02 Score=31.26 Aligned_cols=58 Identities=26% Similarity=0.137 Sum_probs=40.5
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|=.| |+|.+|..+++ +|++|++++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus 371 ~k~vlItG-as~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~ 432 (657)
T PRK07201 371 GKVVLITG-ASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKG----GTAHAYTCDLTDS 432 (657)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC----CcEEEEEecCCCH
Confidence 55666544 56777777665 68899999999988776665554433 2578888887653
No 485
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=51.15 E-value=1.4e+02 Score=26.53 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.|+ +|.++..+++ .|++|+.++.++..++.+.. .++ .++.++.+|+.+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~---~~~----~~~~~~~~D~~~ 62 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEA---AHG----DAVVGVEGDVRS 62 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hcC----CceEEEEeccCC
Confidence 3566776665 4666666554 68999999998876655432 122 247777888755
No 486
>PRK12827 short chain dehydrogenase; Provisional
Probab=50.80 E-value=1.6e+02 Score=25.47 Aligned_cols=58 Identities=26% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCchhHHHHHh----cCCEEEEEeC----CHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAAR----RGAIVAANDL----NPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~----~g~~V~avD~----~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
++++|=.| |+|.++..+++ +|++|+.++. ++...+.+.......+ .++.++.+|+.+.
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~ 71 (249)
T PRK12827 6 SRRVLITG-GSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAG----GKALGLAFDVRDF 71 (249)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcC----CcEEEEEccCCCH
Confidence 45676444 56777766654 6889988764 3444444444444333 3588888987653
No 487
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=50.75 E-value=39 Score=31.25 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=29.6
Q ss_pred EEEEEcCCC--chhHHHHHhcCCEEEEEeCCHHHHHHHHHHHH
Q psy16898 165 LVLDVFAGV--GPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205 (324)
Q Consensus 165 ~VLDl~~G~--G~~al~~a~~g~~V~avD~~~~a~~~a~~N~~ 205 (324)
+|.=+|||. +.++..+++.|..|+.+|.+++.++.+++.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 566666663 23455556678899999999999988766544
No 488
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.58 E-value=1.7e+02 Score=25.51 Aligned_cols=59 Identities=22% Similarity=0.093 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCchhHHHHHh----cCCEEEEEeCCHH-HHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAAR----RGAIVAANDLNPD-SYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a~----~g~~V~avD~~~~-a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++++|-.|+ +|.++..+++ .|.+|+++..+.. ..+.+...++..+ .++.++.+|+.+.
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~----~~~~~~~~D~~~~ 68 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG----GRASAVGADLTDE 68 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC----CceEEEEcCCCCH
Confidence 3567887664 5566666654 6889998877643 3343333333223 2577888887653
No 489
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=50.32 E-value=36 Score=32.43 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=30.4
Q ss_pred hccCCCEEEEEcCCCchhHHHH---Hh-cCC-EEEEEeCCHHHHHHHH
Q psy16898 159 EVREGDLVLDVFAGVGPFSIPA---AR-RGA-IVAANDLNPDSYAWLQ 201 (324)
Q Consensus 159 ~~~~g~~VLDl~~G~G~~al~~---a~-~g~-~V~avD~~~~a~~~a~ 201 (324)
.+++|++||=.|+ |.+++.+ |+ .|+ .|+++|.+++-.+.++
T Consensus 183 ~~~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 183 KVEPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3568999988865 5555554 44 588 7999999999877764
No 490
>KOG1208|consensus
Probab=49.99 E-value=2.1e+02 Score=27.03 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCchhHH----HHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 162 EGDLVLDVFAGVGPFSI----PAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al----~~a~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
.|.+++=.|+-. +++. .+|.+|++|+-.--|.+..+.+++-+.... -..++.++..|..+.
T Consensus 34 ~~~~~vVTGans-GIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~--~~~~i~~~~lDLssl 98 (314)
T KOG1208|consen 34 SGKVALVTGATS-GIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGK--ANQKIRVIQLDLSSL 98 (314)
T ss_pred CCcEEEEECCCC-chHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CCCceEEEECCCCCH
Confidence 344555555444 4444 445589999999889877777777776533 334788999997654
No 491
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=49.95 E-value=1.4e+02 Score=24.22 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=35.6
Q ss_pred EcCCCchhHHHHHh----cCC-EEEEEeCC--HHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 169 VFAGVGPFSIPAAR----RGA-IVAANDLN--PDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 169 l~~G~G~~al~~a~----~g~-~V~avD~~--~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+..|+|++|..+++ +|+ .|+.+..+ ....+.....++..+ .++.++..|+.+
T Consensus 5 ItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~----~~~~~~~~D~~~ 63 (167)
T PF00106_consen 5 ITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG----AKITFIECDLSD 63 (167)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT----SEEEEEESETTS
T ss_pred EECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc----cccccccccccc
Confidence 34456777777665 556 88888888 566666666666444 368999988754
No 492
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.85 E-value=1.4e+02 Score=26.82 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=22.9
Q ss_pred CCCEEEEEcC-CCchhHHHHH----hcCCEEEEEeCC
Q psy16898 162 EGDLVLDVFA-GVGPFSIPAA----RRGAIVAANDLN 193 (324)
Q Consensus 162 ~g~~VLDl~~-G~G~~al~~a----~~g~~V~avD~~ 193 (324)
.++++|=.|+ |++.++..+| +.|++|+.++..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc
Confidence 4678888887 4677766665 468898887643
No 493
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=49.63 E-value=39 Score=31.24 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=32.1
Q ss_pred ccCCCEEEEEcCC-CchhHHHHHh-cCCEEEEEeCCHHHHHHHH
Q psy16898 160 VREGDLVLDVFAG-VGPFSIPAAR-RGAIVAANDLNPDSYAWLQ 201 (324)
Q Consensus 160 ~~~g~~VLDl~~G-~G~~al~~a~-~g~~V~avD~~~~a~~~a~ 201 (324)
+.++++||-.+|| +|..++.+|+ .|.+|++++.+++..+.++
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5678888888775 6666666666 5889999999998877763
No 494
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=49.59 E-value=1.3e+02 Score=26.52 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=32.8
Q ss_pred cCCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 170 FAGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 170 ~~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
-.|+|.+|..+++ .|++|++++.++..++.+...+ + .++.++.+|+.+.
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~Dl~~~ 58 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---G----DNLYIAQLDVRNR 58 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c----cceEEEEecCCCH
Confidence 3566777766664 6889999999987655443322 2 1477788887654
No 495
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=49.52 E-value=44 Score=32.33 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCchhHHHHHhc----------CCEEEEEeCCHHHHHHHHHHHHH
Q psy16898 163 GDLVLDVFAGVGPFSIPAARR----------GAIVAANDLNPDSYAWLQASIRL 206 (324)
Q Consensus 163 g~~VLDl~~G~G~~al~~a~~----------g~~V~avD~~~~a~~~a~~N~~~ 206 (324)
.-.++++|+|.|.++.-+++. .+++.-||.|++..+.=+++++.
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 347999999999999776651 45999999999988776666653
No 496
>PRK06940 short chain dehydrogenase; Provisional
Probab=49.47 E-value=65 Score=29.22 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=37.8
Q ss_pred CEEEEEcCCCchhHHHHHh---cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHH
Q psy16898 164 DLVLDVFAGVGPFSIPAAR---RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225 (324)
Q Consensus 164 ~~VLDl~~G~G~~al~~a~---~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~ 225 (324)
+++|=-|+ |.++..+++ .|++|+.++.++..++.+.+.++..+ . ++.++..|+.+.
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~--~~~~~~~Dv~d~ 61 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--F--DVSTQEVDVSSR 61 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--C--eEEEEEeecCCH
Confidence 34555554 578877776 58899999999877766555554333 2 577888887653
No 497
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=49.46 E-value=9 Score=30.01 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.8
Q ss_pred cccEEEECChhhhH
Q psy16898 249 AVARVIMNLPATAV 262 (324)
Q Consensus 249 ~fD~Vi~npP~~a~ 262 (324)
.||+||-|||+...
T Consensus 2 kFD~VIGNPPY~~~ 15 (106)
T PF07669_consen 2 KFDVVIGNPPYIKI 15 (106)
T ss_pred CcCEEEECCCChhh
Confidence 39999999999644
No 498
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=49.45 E-value=83 Score=26.38 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=46.6
Q ss_pred cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHHHHHHHHHHhhhhhcccCCCCCCCCcccEEEECChhh--
Q psy16898 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPAT-- 260 (324)
Q Consensus 183 ~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Vi~npP~~-- 260 (324)
+--.++|-..-.+.-+.+++.++..+ +. +++++.+....+-+...+. ...+|.||+||-..
T Consensus 18 REp~iYG~~tl~~i~~~~~~~a~~~g--~~--~~~~QSN~EGelId~i~~a-------------~~~~dgiIINpga~TH 80 (146)
T PRK13015 18 REPAIYGHETLADVEALCRAAAEALG--LE--VEFRQSNHEGELIDWIHEA-------------RGDVAGIVINPGAYTH 80 (146)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHHcC--CE--EEEEeeCcHHHHHHHHHHh-------------hhcCCEEEEcchHHhh
Confidence 33356766666666666777777667 64 8888887765444333321 12389999999875
Q ss_pred -hHHHHHHHhcc
Q psy16898 261 -AVEYVRYLKVL 271 (324)
Q Consensus 261 -a~~~l~~~~~l 271 (324)
+....+++...
T Consensus 81 tSiAl~DAl~~~ 92 (146)
T PRK13015 81 TSVAIRDALAAL 92 (146)
T ss_pred hHHHHHHHHHcC
Confidence 45677777664
No 499
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=49.17 E-value=21 Score=36.85 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=34.6
Q ss_pred CCCchhHHHHHh----cCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 171 AGVGPFSIPAAR----RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 171 ~G~G~~al~~a~----~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
||.|.++..+++ .|..++.+|.|++.++.+++ .+ ..++.||+.+
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g------~~v~~GDat~ 453 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG------YKVYYGDATQ 453 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC------CeEEEeeCCC
Confidence 788888887776 47799999999999887753 23 4678888865
No 500
>PRK06484 short chain dehydrogenase; Validated
Probab=49.14 E-value=1.2e+02 Score=30.34 Aligned_cols=55 Identities=24% Similarity=0.136 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCchhHHHHH----hcCCEEEEEeCCHHHHHHHHHHHHHhCCCCCCCeEEEeccHHH
Q psy16898 162 EGDLVLDVFAGVGPFSIPAA----RRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224 (324)
Q Consensus 162 ~g~~VLDl~~G~G~~al~~a----~~g~~V~avD~~~~a~~~a~~N~~~n~~~l~~~v~~~~~D~~~ 224 (324)
+++++|=.|++. .++..+| +.|++|+.++.++..++.+.+.+ + .++.++..|+.+
T Consensus 4 ~~k~~lITGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~----~~~~~~~~D~~~ 62 (520)
T PRK06484 4 QSRVVLVTGAAG-GIGRAACQRFARAGDQVVVADRNVERARERADSL---G----PDHHALAMDVSD 62 (520)
T ss_pred CCeEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C----CceeEEEeccCC
Confidence 466777666654 4555555 47999999999988766544322 2 246677777654
Done!