RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16898
(324 letters)
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 190 bits (485), Expect = 1e-58
Identities = 73/285 (25%), Positives = 122/285 (42%), Gaps = 50/285 (17%)
Query: 42 YDNFSAEDILKAILP----DNVAMSSFTSVGHIVHCNLREELIE-HKFIIGRVLLDKVPS 96
S +I+ + + S+ VG +V + +E+ E + IG + +P
Sbjct: 71 IKKPSFREIISKKYRKEIDEGLISLSYDVVGDLVILQISDEVDEKIRKEIGELAYKLIP- 129
Query: 97 CETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERV 156
C+ V + + +R ++E LAG++ +T+HKENG +D +KVY++ RL E R+
Sbjct: 130 CKGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARI 189
Query: 157 TKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
K+V D+V+D+FAGVGPFSI + A D+NP + L+ +I+LN +++ I
Sbjct: 190 MKKVSLNDVVVDMFAGVGPFSIACK-NAKKIYAIDINPHAIELLKKNIKLN--KLEHKII 246
Query: 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEF 276
D R+ RVIMNLP A +++
Sbjct: 247 PILSDVREV---------------------DVKGNRVIMNLPKFAHKFIDKA-------L 278
Query: 277 GKLSRPPVLYLYCFLPKMDLETK-------------KKIKSYDPS 308
+ V++ Y D K + +KSY P
Sbjct: 279 DIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKRIVKSYAPR 323
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 163 bits (414), Expect = 9e-49
Identities = 61/256 (23%), Positives = 108/256 (42%), Gaps = 35/256 (13%)
Query: 46 SAEDILKAILPDNVAM---SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVN 102
+IL LP+ + + +G ++ LR EL +K I V + V +TV+
Sbjct: 9 RIREILSKELPEELVKLLPKRWVRIGDVLLLPLRPELEPYKHRIAEVYAE-VLGVKTVLR 67
Query: 103 KAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE 162
K I R ELL G D + H ENG +K+D +K+ ++ E R+ K +
Sbjct: 68 K-GHIHGETRKPDYELLYGSDTVTV-HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKP 125
Query: 163 GDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKD 221
+LV+D+FAG+G S+P A G V A + +P ++ +L +I LN +V+ +SA D
Sbjct: 126 DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMD 183
Query: 222 ARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSR 281
RDF + ++M E++ +
Sbjct: 184 NRDFPGENIADR-------------------ILMGYVVRTHEFI-------PKALSIAKD 217
Query: 282 PPVLYLYCFLPKMDLE 297
+++ + +P+ +
Sbjct: 218 GAIIHYHNTVPEKLMP 233
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 160 bits (407), Expect = 8e-48
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 39/264 (14%)
Query: 41 TYDNFSAEDILKAILPDNV-AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCET 99
++ + L+ + + + +G +V E + I+ K C+
Sbjct: 4 SHHHHHHSSGLEVLFQGPLHMGIKYQKIGDVVIVKKELSEDEIREIV------KRTKCKA 57
Query: 100 VVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKE 159
++ I +R +++L GK+ HKE GC FK+D +K+ W+ E +R+
Sbjct: 58 ILLYTTQITGEFRTPHVKILYGKETETI-HKEYGCLFKLDVAKIMWSQGNIEERKRMAFI 116
Query: 160 VREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
E ++V+D+FAG+G F+IP A+ + +V A + NP +Y +L +I+LN+ PI
Sbjct: 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPI-- 174
Query: 218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFG 277
D RD D VIM +++ ++
Sbjct: 175 -LADNRDVELKDVADR-------------------VIMGYVHKTHKFLDKTFEFLKDR-- 212
Query: 278 KLSRPPVLYLYCFLPKMDLETKKK 301
V++ + + + + +
Sbjct: 213 -----GVIHYHETVAEKIMYERPI 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 2e-08
Identities = 62/374 (16%), Positives = 107/374 (28%), Gaps = 112/374 (29%)
Query: 16 GEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAILP---DNVAMSS-FTSVGHIV 71
G +L + F A L + F+ ILP + A T+
Sbjct: 14 GSLEHVLL----VPTASFFIASQL--QEQFNK------ILPEPTEGFAADDEPTTP---- 57
Query: 72 HCNLREELIEH--KFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKD---CMV 126
EL+ ++ V KV + V+N F+ L G D
Sbjct: 58 -----AELVGKFLGYVSSLVEPSKVGQFDQVLNLC------LTEFENCYLEGNDIHALAA 106
Query: 127 TMHKENGCTF--KMDFSKVYWNSRLSTEHERVT-------KEVREGD--LVLDVFAGVGP 175
+ +EN T + K Y +R+ + + V EG+ LV +F G G
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-IFGGQGN 165
Query: 176 -----------FSIPAARRGAIV--AANDLNP----------------DSYAWLQASIR- 205
+ G ++ +A L+ + WL+
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 206 -----LNERQVKTP-ISATQKDARDFLQTDARAHLVRWSQSE--GNSTGGTAVARVIMNL 257
L + P I Q A L+ ++ E G T ++ + +
Sbjct: 226 PDKDYLLSIPISCPLIGVIQ-----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--V 278
Query: 258 PATAVEYVRYLKVLTREEFGKLSRPPVLYLY--------CFLPKMDLETKKKIKSYD--- 306
A A+ + + E F R + L+ + P L S +
Sbjct: 279 TAVAIA-----ETDSWESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSLENNE 332
Query: 307 --PSYATLIRGIRR 318
PS I + +
Sbjct: 333 GVPSPMLSISNLTQ 346
Score = 49.7 bits (118), Expect = 9e-07
Identities = 51/312 (16%), Positives = 91/312 (29%), Gaps = 121/312 (38%)
Query: 29 TAK--DFTHAEVLLTYDNFSA-----EDILKAILPDNVAMS----SFTSVGHIVHCNLRE 77
TAK FT E+ + ++ A+ +A + SF ++R+
Sbjct: 252 TAKLLGFTPGEL---RSYLKGATGHSQGLVTAVA---IAETDSWESF-------FVSVRK 298
Query: 78 ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFK 137
I F IG + Y N + +D + EN
Sbjct: 299 -AITVLFFIG---------VR-----CY---EAYPNTSLPPSILEDSL-----ENNEGVP 335
Query: 138 --MDFSKVYWNSRLSTEHERVTKEVR--------EGDLVLDVFAG----V--GPFSIPAA 181
M S + S L+ E V V + + + G V GP P +
Sbjct: 336 SPM-LS-I---SNLTQEQ--VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP---PQS 385
Query: 182 --------RRGAIVAANDLNPDSYAWLQASIRLNERQVKT-----PISA---TQ--KDAR 223
R+ + D Q+ I +ER++K P+++ + A
Sbjct: 386 LYGLNLTLRKAKAPSGLD---------QSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 224 DFLQTDARAHLVRWSQSE------GNSTG----------GTAVARVIMNLPA--TAVEYV 265
D + D + V ++ + G + I+ LP
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 266 RYLKVLTREEFG 277
+ +L +FG
Sbjct: 497 KATHIL---DFG 505
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 51.5 bits (124), Expect = 1e-07
Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 22/176 (12%)
Query: 57 DNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNF-- 114
V + S G RE + L +V + + V ++
Sbjct: 115 GEVLVLQVRSRGMEAL---REVWLP--------ALLEVVAPKGVYERSDVEARRQEGLPE 163
Query: 115 QMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEH----ERVTKEVREGDLVLDVF 170
++ ++ G+ V +E+G F + + + + VR G+ VLDV+
Sbjct: 164 RVGVVYGEVPEVLEVEEDGLRFPIPLAL-AQKTGYYLDQRENRRLFEAMVRPGERVLDVY 222
Query: 171 AGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL 226
+ VG F++ AAR+GA A D + ++ L + +V +A L
Sbjct: 223 SYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDI----RHGEALPTL 274
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 47.9 bits (114), Expect = 2e-06
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 21/164 (12%)
Query: 82 HKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQME-------LLAGKDCMVTMHKENGC 134
K + +++ P ETV K NT R+ + E +L GK+ T+ +E
Sbjct: 133 FKLDVAEAIMEVEPGIETVFEK-----NTGRSRRREGLPEIERVLLGKEKYRTIIQEGRA 187
Query: 135 TFKMDFSK----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI-VAA 189
F +D + + R + + K V+ GD VLDVF G F+I AA GA V
Sbjct: 188 KFIVDMRGQKTGFFLDQREN--RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIG 245
Query: 190 NDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAH 233
D +P + + + +LN V+ + A + ++ +
Sbjct: 246 IDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKG 287
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 46.0 bits (108), Expect = 9e-06
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 127 TMHKENGCTFKM------DFSKVYWNSRLSTEHERVTKEVR--EGDLVLDVFAGVGPFSI 178
+E + S V++N R++ + V + +VLD + G I
Sbjct: 4 IEVQEGKAKILIPKAESIYDSPVFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGI 63
Query: 179 PAAR--RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
A V ND++ D+Y ++ ++ LN
Sbjct: 64 RFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKG 104
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 45.8 bits (109), Expect = 1e-05
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE---GDLVLDVFAGVGPFSIPAARRGAI 186
+E+G +D + + R VL+ F+ G F++ A G
Sbjct: 186 EEHGMKLLVDIQH-GHKTGYYLDQRDSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCS 244
Query: 187 -VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232
V + D + ++ + ++ LN+ + + D L+T
Sbjct: 245 QVVSVDTSQEALDIARQNVELNKLDLSK-AEFVRDDVFKLLRTYRDR 290
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 45.2 bits (107), Expect = 1e-05
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 9/109 (8%)
Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE-------GDLVLDVFAGVGPFSIPAAR 182
G F F+ + + + E + ++ VL++F G S+ AA
Sbjct: 115 SLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA 173
Query: 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDAR 231
GA V D + + W + + L + PI +DA F+Q + R
Sbjct: 174 AGAEVTHVDASKKAIGWAKENQVLAGLEQA-PIRWICEDAMKFIQREER 221
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 44.5 bits (106), Expect = 3e-05
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 130 KENGCTFKMDFSK-----VYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRG 184
ENG ++ + + ++ + R + G VL++F+ FS+ AA G
Sbjct: 177 LENGISYNVFLNDGLMTGIFLDQRQV--RNELINGSAAGKTVLNLFSYTAAFSVAAAMGG 234
Query: 185 AI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234
A+ + DL S A A N + D D+ + R HL
Sbjct: 235 AMATTSVDLAKRSRALSLAHFEANHLDMAN-HQLVVMDVFDYFKYARRHHL 284
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 43.0 bits (101), Expect = 5e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 138 MDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
D + + SR+ T + K +++ VLD+ GVG FS G V D++ D
Sbjct: 14 TDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED 71
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 42.7 bits (101), Expect = 9e-05
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARRGAIV 187
+E + +D + + + G+ LDVF+ G F++ A V
Sbjct: 176 QEGRVRYLVDLRA-GQKTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV 234
Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFL 226
A D + ++ + + RLN + + +A D L
Sbjct: 235 VAVDSSAEALRRAEENARLNGLG---NVRVLEANAFDLL 270
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 39.3 bits (92), Expect = 5e-04
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
E + D+ +DV G G ++ A R V A D NP++ + + +++ + + ++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH--GLGDNVTLM 87
Query: 219 QKDARDFLQTDARAHLV 235
+ DA + L +
Sbjct: 88 EGDAPEALCKIPDIDIA 104
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 40.2 bits (93), Expect = 7e-04
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 19/122 (15%)
Query: 126 VTMHKENGCTFKMDFS--------KVYWNSRLSTEH-------ERVTKEVREGDLVLDVF 170
+ + +E + V++N R+ E + K++ V D
Sbjct: 1 MEIVQEGIAKIIVPEIPKTVSSDMPVFYNPRMRVNRDLAVLGLEYLCKKLGRPVKVADPL 60
Query: 171 AGVGPFSIPAARRGAI---VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQ 227
+ G +I + AND++ + ++ + +LN +A FL+
Sbjct: 61 SASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDR-YEIHGMEANFFLR 119
Query: 228 TD 229
+
Sbjct: 120 KE 121
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 39.9 bits (93), Expect = 7e-04
Identities = 17/73 (23%), Positives = 28/73 (38%)
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
E T+ VL++ AG+G + P G V A +L+ A + + V+
Sbjct: 73 REFATRTGPVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVR 132
Query: 213 TPISATQKDARDF 225
+ Q D F
Sbjct: 133 DRCTLVQGDMSAF 145
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 39.8 bits (92), Expect = 8e-04
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
+REG V+D+ G+G I + + + N ++ + +I L + K ++
Sbjct: 91 IREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-DVNILT 149
Query: 220 KDARDFLQTDARAH 233
D +++L H
Sbjct: 150 GDFKEYLPLIKTFH 163
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 1.80A
{Neisseria gonorrhoeae}
Length = 258
Score = 39.4 bits (91), Expect = 0.001
Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 8/130 (6%)
Query: 112 RNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRL-STEHERVTKEV--REGDLVLD 168
LLA D + +DF+ R E + K V V D
Sbjct: 30 PEQGSYLLAEHDTVSLRLVGEKSNVIVDFTSGAAQYRRTKGGGELIAKAVNHTAHPTVWD 89
Query: 169 VFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRL-----NERQVKTPISATQKDAR 223
AG+G S A G V A + +P L IR + I+ +A
Sbjct: 90 ATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAA 149
Query: 224 DFLQTDARAH 233
+ + +
Sbjct: 150 EQMPALVKTQ 159
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 38.9 bits (91), Expect = 0.001
Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 139 DFSKVY-----WNSRLSTEHERVTKEVRE----GDLVLDVFAGVGPFSIPAARRGAIVAA 189
F+ +Y + + + ++ E D LD+ G G + + A
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWA 64
Query: 190 NDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
DL+ + + +A + + +K +D +
Sbjct: 65 VDLSQEMLS--EAENKFRSQGLK--PRLACQDISNL 96
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 39.1 bits (91), Expect = 0.001
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNER-QVKTPIS 216
+ D+ AG G + A R A V + + + + + S+ L + I
Sbjct: 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 217 ATQKDARDFLQTDARAHL 234
+ D + A L
Sbjct: 94 VLEADVTLRAKARVEAGL 111
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 39.0 bits (91), Expect = 0.001
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 15/98 (15%)
Query: 139 DFSKVY------WNSRLSTEHERVTKEVRE-----GDLVLDVFAGVGPFSIPAARRGAIV 187
++ Y R+ E + V + +E VLD+ G G ++ A RG V
Sbjct: 7 LLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEV 66
Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
DL+ + A + ER +K I Q D +
Sbjct: 67 VGLDLHEEMLR--VARRKAKERNLK--IEFLQGDVLEI 100
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 38.8 bits (90), Expect = 0.001
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
+ + D+V+D F GVG +I A G V A D++P A + + + + I
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY--GIADKIEF 131
Query: 218 TQKDARDFLQ 227
D
Sbjct: 132 ICGDFLLLAS 141
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 25/101 (24%)
Query: 140 FSKVY--WNSRLS--TEHERVT----KEVREGDLVLDVFAGVGPFSIPAARRGAIVAAND 191
++ Y H + + ++ VLD+ G G +S+ RG V D
Sbjct: 24 IARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVD 83
Query: 192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARA 232
+ + L A +K ++ ++ A
Sbjct: 84 PSKEM---------LEV--------AREKGVKNVVEAKAED 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 30/265 (11%), Positives = 70/265 (26%), Gaps = 87/265 (32%)
Query: 12 FEDFGEFNVKVLENA-KLTAKDFTHAEVLLTYDNFSAEDILKAILPDNVAMSSFTSVGHI 70
++++ N L + + AE +D ++ P + + T + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-------SVFPPSAHIP--TILLSL 394
Query: 71 VHCNLRE---ELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYR--NFQMELLAGKDCM 125
+ ++ + ++ +K L++K ++T + +EL +
Sbjct: 395 IWFDVIKSDVMVVVNKLH-KYSLVEK-----------QPKESTISIPSIYLELKVKLENE 442
Query: 126 VTMHKE-------NGCTFKMDFSKV----YWNSRLSTEHERVTKEVREGDLVLDVFAGVG 174
+H+ D Y+ S + H + + L VF
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVF---- 497
Query: 175 PFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ--------------- 219
L+ + +L+ IR + S
Sbjct: 498 -----------------LD---FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 220 --------KDARDFLQTDARAHLVR 236
DFL +L+
Sbjct: 538 DPKYERLVNAILDFLPK-IEENLIC 561
Score = 39.1 bits (90), Expect = 0.002
Identities = 57/367 (15%), Positives = 99/367 (26%), Gaps = 114/367 (31%)
Query: 1 MTLHFYKVIQKFEDFGEFNVKVLENAKLTAKDFTHAEVLLTYDNFSAE-DILKAILPDNV 59
YKV K DF F + + + VL + D D+
Sbjct: 169 DVCLSYKVQCKM-DFKIFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDH- 219
Query: 60 AMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKV----------PSCETVVNKAHTIDN 109
S+ H + LR L + ++L V SC+ ++
Sbjct: 220 -SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL-------- 270
Query: 110 TYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDV 169
T R Q VT DF + +S +H +T E +L
Sbjct: 271 TTRFKQ----------VT-----------DFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 170 FAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD 229
+ P +P NP + SI I+ + +D
Sbjct: 310 YLDCRPQDLPR-------EVLTTNP-----RRLSI----------IAESIRDGLATWD-- 345
Query: 230 ARAHLVRWSQSEGNSTGGTAVARVIMNL-PATAVEYVRYL-----------KVLTR---- 273
W + T + + L PA + L +L+
Sbjct: 346 ------NWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 274 ----------EEFGKLS---RPPVLYLYCFLPKMDLETKKKIKSYDPSYATLI---RGIR 317
+ K S + P +P + LE K K+++ + +++ +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 318 RLSSDGP 324
SD
Sbjct: 458 TFDSDDL 464
Score = 37.5 bits (86), Expect = 0.006
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 39/152 (25%)
Query: 192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTD----ARAHLVRWSQSEGNSTGG 247
L + Y +L + I+ +RQ + ++ + RD L D A+ ++ R
Sbjct: 87 LRIN-YKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY------- 137
Query: 248 TAVARVIMNL-PAT---------------AVEYVRYLKVLTREEFGKLSRPPVLYL---Y 288
+ + ++ L PA A++ KV + +F + +L
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK------IFWLNLKN 191
Query: 289 CFLPKMDLETKKKIKS-YDPSYATLIRGIRRL 319
C P+ LE +K+ DP++ + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 38.6 bits (90), Expect = 0.002
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 121 GKDCMVTMHKENGCTF----KMDFSKVYWNS----RLSTEHERVTKEV------REGDLV 166
G D + H F + +K +W++ + + +++ + G+ +
Sbjct: 2 GSDKIHHHHHHENLYFQGMTNLGTAKNFWDATLYQDKHSFVWQYGEDLLQLLNPQPGEFI 61
Query: 167 LDVFAGVGPFSIPAARRGAIVAANDLNPD 195
LD+ G G + A+ GA V D
Sbjct: 62 LDLGCGTGQLTEKIAQSGAEVLGTDNAAT 90
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 38.4 bits (89), Expect = 0.002
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+++T E + L++ G G ++P RG A D +
Sbjct: 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAA 72
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 37.5 bits (87), Expect = 0.002
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 7/86 (8%)
Query: 144 YWNSR--LSTEHERVTKEVR--EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
Y+ + L+ H V + V+ + LD+ G G S+ A G V A D N S A
Sbjct: 10 YFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIAN 69
Query: 200 LQASIRLNERQVKTPISATQKDARDF 225
++ R+ + + D +
Sbjct: 70 VE---RIKSIENLDNLHTRVVDLNNL 92
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.1 bits (86), Expect = 0.003
Identities = 5/49 (10%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAAR--RGAIVAANDLNPDSYAWLQASIR 205
+ + + D+ G G +I R +++ + + ++
Sbjct: 22 APKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAI 70
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 37.4 bits (87), Expect = 0.003
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 136 FKMDFSKVYW----NSRLSTEHERVTKE--VREGDLVLDVFAGVGPFSIPAARR----GA 185
K D SK+ + + E+V KE ++EG VLDV G G + ++ G
Sbjct: 5 HKFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGK 64
Query: 186 IVAANDLNPD 195
+ A D+ +
Sbjct: 65 VYAI-DVQEE 73
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 37.1 bits (86), Expect = 0.004
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
++E D +LD+ G G S+ A +G V D+N ++ ++ + ++
Sbjct: 28 LQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEA---IRLA---ETAARSPGLNQKT 81
Query: 220 KDARDFLQTDARA 232
+F +A +
Sbjct: 82 GGKAEFKVENASS 94
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification,
iron-sulfur cluster, RNA processing; 1.95A {Escherichia
coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Length = 433
Score = 37.5 bits (88), Expect = 0.005
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 51 LKAILPDNVAMSSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNT 110
++A L ++ + +GH+ + +I R + + + +
Sbjct: 176 VRACLG---SLQAMRHLGHVELVQATSGTL----MILRHTAPLSSADREKLERFSHSEGL 228
Query: 111 YRNFQ-----MELLAGKDCMVTMHKENGCTFK---MDFSKVYWNSRLSTEH--ERVTK-- 158
+E ++G+ + NG DF +V N+ + + R +
Sbjct: 229 DLYLAPDSEILETVSGEM---PWYDSNGLRLTFSPRDFIQV--NAGV-NQKMVARALEWL 282
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIV 187
+V+ D VLD+F G+G F++P A + A V
Sbjct: 283 DVQPEDRVLDLFCGMGNFTLPLATQAASV 311
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 36.6 bits (85), Expect = 0.006
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 139 DFSKVY----WNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
F+ VY + V ++V G + D+ G G ++ A V DL+
Sbjct: 6 QFAYVYDELMQDVPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSE 64
Query: 195 DSYAWLQASIRLNERQVKTPISATQKDARDF 225
+ Q + + +D R+
Sbjct: 65 EMLEIAQE----KAMETNRHVDFWVQDMREL 91
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 36.4 bits (85), Expect = 0.006
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASI-RLNERQVKTPISATQ 219
LD FAG G A R A V +L+ L+ ++ L + +
Sbjct: 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEV--IN 110
Query: 220 KDARDFLQTDAR 231
+ + DFL+
Sbjct: 111 QSSLDFLKQPQN 122
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 36.4 bits (84), Expect = 0.006
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 140 FSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
+++ + ST + V++ VLDV G G + +R G D++
Sbjct: 31 SQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISE 85
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 36.6 bits (84), Expect = 0.006
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 154 ERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+++ + VL+ G GP + + A AA D +P+
Sbjct: 40 LWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE 81
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 35.8 bits (83), Expect = 0.007
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+ +++D G G + + D+N
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVI 50
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 35.9 bits (83), Expect = 0.010
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
E R VLD+ AG G ++ + D +
Sbjct: 18 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE 54
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 36.0 bits (83), Expect = 0.011
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+ +G ++ D+ AG G +S+ A +G V A + +
Sbjct: 31 NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIV 67
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 35.6 bits (82), Expect = 0.012
Identities = 10/90 (11%), Positives = 30/90 (33%), Gaps = 4/90 (4%)
Query: 148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQASIR 205
+LS E+V + + + + D+ + A + A ++ + Q +R
Sbjct: 7 QLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR 66
Query: 206 LNERQVKTPISATQKDARDFLQTDARAHLV 235
+ + I + + ++ +
Sbjct: 67 SSGLTEQ--IDVRKGNGLAVIEKKDAIDTI 94
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 35.8 bits (82), Expect = 0.013
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 10/103 (9%)
Query: 140 FSKVY------WNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARRGAIVAAND 191
++V+ SR + + +R+ VLDV G G SI G V + D
Sbjct: 27 AARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVD 86
Query: 192 LNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHL 234
+ A R+ + + ++L D
Sbjct: 87 ASDKMLK--YALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA 127
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 35.2 bits (81), Expect = 0.014
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205
R G+L+ D+ G G S+ G + D +Q +I
Sbjct: 52 APRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNID 98
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 35.1 bits (80), Expect = 0.015
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220
EG +V D+ AG G S A GA V +++ ++ L ++ + + K I +
Sbjct: 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE 108
Query: 221 DARDF 225
Sbjct: 109 FNSRV 113
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 35.2 bits (81), Expect = 0.016
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 166 VLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
+L + G G + A G V A D + A + E+ VK I+ Q + DF
Sbjct: 33 ILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQ--LAQEKGVK--ITTVQSNLADF 88
Query: 226 LQTDARAHLVRWS 238
+
Sbjct: 89 DIVADAWEGIVSI 101
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 35.3 bits (82), Expect = 0.019
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 166 VLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207
+L+++ G G FS+ AR V A ++ S A Q +I N
Sbjct: 217 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 258
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 34.9 bits (80), Expect = 0.023
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 128 MHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
C + FSK Y + + + K + VLD+ G G S+ + G V
Sbjct: 87 CTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCK-VLDLGCGQGRNSLYLSLLGYDV 145
Query: 188 AANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
+ D N +S A+L + + + IS D
Sbjct: 146 TSWDHNENSIAFLNETKE--KENLN--ISTALYDINAA 179
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 35.0 bits (80), Expect = 0.026
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR----GAIVAANDLNPDSYAWLQASIRLNERQVKTP 214
+V+ G+ +L++ G G S A + G + D+ Y + + P
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI-DIASPDYGAPLTLGQAWNHLLAGP 98
Query: 215 ISATQKDARDFLQTDARAH 233
+ D +
Sbjct: 99 LG----DRLTVHFNTNLSD 113
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 35.0 bits (80), Expect = 0.028
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPIS 216
+ + +VLDV G G S+ AA+ GA V D + Y QA + +++ I+
Sbjct: 60 PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY---QAMDIIRLNKLEDTIT 116
Query: 217 ATQKDARDFLQTDARAHLV 235
+ + + ++
Sbjct: 117 LIKGKIEEVHLPVEKVDVI 135
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 34.5 bits (79), Expect = 0.029
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQASIR 205
+LS ++V V +G +LDV + I + G A ++ Y ++
Sbjct: 7 QLSKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVS 66
Query: 206 LNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYV 265
+ K I + + + GG +A ++ N
Sbjct: 67 EHGLTSK--IDVRLANGLSAFEEADNIDTITIC-----GMGGRLIADILNNDIDKLQHVK 119
Query: 266 RYL 268
+
Sbjct: 120 TLV 122
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 34.8 bits (80), Expect = 0.029
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
++ G +LD+ +G G AR G D++ A + E V +
Sbjct: 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE--ELGVSERVHFI 91
Query: 219 QKDARDF 225
DA +
Sbjct: 92 HNDAAGY 98
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 34.6 bits (79), Expect = 0.040
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 147 SRLSTEH--ERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASI 204
S L E ER+ E G VLD+ AG G ++P AR GA V + + S LQ +
Sbjct: 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGL 275
Query: 205 RLNERQVKTPISATQKDARDFLQTDARAHLV 235
N + + A D + L +AR ++
Sbjct: 276 EANALKAQ----ALHSDVDEALTEEARFDII 302
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 34.3 bits (78), Expect = 0.042
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
K++ + +VLDV G G S+ AA+ GA V D++ A + I+
Sbjct: 34 KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIE---MAKELVELNGFSDKIT 90
Query: 217 ATQKDARDFLQTDARAHLV 235
+ D + ++
Sbjct: 91 LLRGKLEDVHLPFPKVDII 109
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 33.2 bits (77), Expect = 0.046
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKD 221
LD FAG G + AA G + +P++ ++ N R+
Sbjct: 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEA----VRLLKENVRRTGLGARVVALP 96
Query: 222 ARDFLQTDARA 232
FL
Sbjct: 97 VEVFLPEAKAQ 107
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 34.0 bits (78), Expect = 0.049
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
++ + VLDV G G + A V A DL D
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED 70
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 33.6 bits (77), Expect = 0.054
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 160 VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
G +LD G G +++G V DL+P
Sbjct: 44 APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDP 78
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 33.7 bits (77), Expect = 0.062
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 139 DFSKVY------WNSRLSTEHERVTKEVRE----GDLVLDVFAGVGPFSIPAARRGAIVA 188
+ +++Y E + VR +LDV G G A V
Sbjct: 17 EIAELYDLVHQGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVE 76
Query: 189 ANDLNPD 195
+L+ D
Sbjct: 77 GLELSAD 83
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 33.6 bits (77), Expect = 0.064
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 139 DFSKVY------WNSRLSTEHERVTKEVR----EGDLVLDVFAGVGPFSIPAARRGAIVA 188
D + VY + E + VR E +LDV G G + A
Sbjct: 7 DHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTA 66
Query: 189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
+L+ D A RL + + Q D RDF
Sbjct: 67 GLELSEDMLT--HARKRLPDATLH------QGDMRDF 95
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 32.9 bits (76), Expect = 0.068
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISAT-- 218
+G + LD+++G G +I A RG + N + I+ N K P
Sbjct: 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL----KVIKENIAITKEPEKFEVR 99
Query: 219 QKDARDFLQT 228
+ DA L+
Sbjct: 100 KMDANRALEQ 109
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.3 bits (76), Expect = 0.072
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 145 WNSRLSTEHERVTK------EVREGDLVLDVFAGVGPFSIPAARRG--AIVAANDLNPD 195
RLS + E + K G VL+ G+G ++ A+ A + + D++P+
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPE 72
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 33.0 bits (76), Expect = 0.081
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207
+ +R GD VLD+ G G +I A + G D++P +A+ + N
Sbjct: 116 RHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN 165
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 33.5 bits (76), Expect = 0.089
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPIS 216
+ + + +VLDV +G G + AA+ GA V + + S + ++ N ++ ++
Sbjct: 62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-YAVKIVKAN--KLDHVVT 118
Query: 217 ATQKDARDFLQTDARAHLV 235
+ + + ++
Sbjct: 119 IIKGKVEEVELPVEKVDII 137
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 32.5 bits (74), Expect = 0.12
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 149 LSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYAWLQASIRL 206
+S E V V +G ++LDV + I RG I A ++ Y ++
Sbjct: 2 ISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA 61
Query: 207 NERQVKTPISATQKDARDFLQTDARAHLV 235
+ +K I + + + ++
Sbjct: 62 H--GLKEKIQVRLANGLAAFEETDQVSVI 88
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 32.1 bits (74), Expect = 0.13
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISAT-- 218
G VLD+FAG G +I A RG + N + QA I+ N K T
Sbjct: 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKA----QAIIQDNIIMTKAENRFTLL 86
Query: 219 QKDARDFLQT 228
+ +A +
Sbjct: 87 KMEAERAIDC 96
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 32.7 bits (74), Expect = 0.14
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 148 RLSTEHERVTKEVREGDLVLDVFAGVGPFSIP---AARRGAIVAANDLNPDSYAWLQASI 204
R + + +R G +V V G + +A G + D +P++ A+
Sbjct: 104 RHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALD--GATR 161
Query: 205 RLNERQVKTPISATQKDARDFLQTDARAHLV 235
+ I+ ++DA L T L+
Sbjct: 162 LAAGHALAGQITLHRQDAWK-LDTREGYDLL 191
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 32.2 bits (74), Expect = 0.15
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIR-LNERQVKTPISATQ 219
LD FAG G + A R A +++ L ++ L +
Sbjct: 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARV----VN 109
Query: 220 KDARDFL-QTDARAHLV 235
+A FL Q ++V
Sbjct: 110 SNAMSFLAQKGTPHNIV 126
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 32.5 bits (74), Expect = 0.16
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 138 MDFSKVYWNSRLSTEHERVTK------EVREGDLVLDVFAGVGPFSIPAARR-GAIVAAN 190
++ K E + + D ++D G G + A RR G+ V
Sbjct: 87 SEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGV 146
Query: 191 DLNPDSYAWLQASIRLNERQVKTPISATQKDARD 224
L+ + + R E ++ + + + D
Sbjct: 147 TLSAAQADF--GNRRARELRIDDHVRSRVCNMLD 178
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 31.8 bits (72), Expect = 0.17
Identities = 12/80 (15%), Positives = 29/80 (36%)
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
H+ + + + + +V+D G G + A V A D+ + + +
Sbjct: 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENT 72
Query: 213 TPISATQKDARDFLQTDARA 232
I ++ +++ RA
Sbjct: 73 ELILDGHENLDHYVREPIRA 92
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 32.2 bits (73), Expect = 0.20
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
+ E L+ D+ G G ++ A V D + R + ++ ++
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNAR--QSGLQNRVTG 100
Query: 218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLK 269
D + L+ WS+ A + E+ +YLK
Sbjct: 101 IVGSMDDLPFRNEELDLI-WSEG----------AIYNIGFERGLNEWRKYLK 141
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 31.8 bits (72), Expect = 0.22
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 142 KVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYA 198
+Y+N + ++ + ++D G G + G+ D A
Sbjct: 2 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
Query: 199 WLQASIRLNERQVKTPISATQKDARDFLQTDARA 232
+A + +FL+ DA
Sbjct: 62 --EARELFRLLPYDS----------EFLEGDATE 83
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207
+ + D+V+DV G G ++ A+R V A D + + ++
Sbjct: 32 NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF 80
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 32.1 bits (72), Expect = 0.26
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPIS 216
K EG VLDV G G +I +A+ GA V A + + A + + +
Sbjct: 59 KHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMAD---HARALVKANNLDHIVE 115
Query: 217 ATQKDARDF 225
+ D
Sbjct: 116 VIEGSVEDI 124
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 31.4 bits (71), Expect = 0.29
Identities = 10/89 (11%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 135 TFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
K ++ + + T R G+ +L++ + G F+ + + +
Sbjct: 17 GHKYAYNFDF-DVMHPFMVRAFTPFFRPGN-LLELGSFKGDFTSRLQEHFNDITCVEASE 74
Query: 195 DSYAWLQASIRLNERQVKTPISATQKDAR 223
++ + Q ++ + + Q R
Sbjct: 75 EAISHAQGRLKDGITYIHSRFEDAQLPRR 103
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 31.4 bits (71), Expect = 0.32
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
E+ + + D+ G G ++ A + DL PD + + +
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV--KANCADRVKG 100
Query: 218 TQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV--EYVRYLK 269
+ + L+ WS+ I N+ E+ +YLK
Sbjct: 101 ITGSMDNLPFQNEELDLI-WSEG------------AIYNIGFERGMNEWSKYLK 141
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 31.0 bits (70), Expect = 0.37
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 158 KEVREGDLVLDVFAGVGPFSIP-AARRGAIVAANDLNP 194
E VLD AG + G +++
Sbjct: 19 NESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISD 56
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 30.9 bits (69), Expect = 0.38
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 145 WNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIP--AARRGAIVAANDLNPDSYAWLQA 202
+ L+ + V ++ +LD G P ++ I A D++ A+L +
Sbjct: 32 RVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS 91
Query: 203 SIRLNERQVKT 213
I + +K
Sbjct: 92 IIGKLKTTIKY 102
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 31.0 bits (70), Expect = 0.42
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 144 YWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
S + E+ G +L++ G G + G V A D +P
Sbjct: 25 AERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSP 75
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.45
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDS 196
+E VLD+ G G V+ + P++
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEA 66
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 31.0 bits (71), Expect = 0.53
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDS 196
E+ EG+ +LD+++GVG F I A+RG V D N +
Sbjct: 287 ELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFA 324
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 30.7 bits (69), Expect = 0.57
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
VL++ +G G ++ + V A D + I R +
Sbjct: 43 AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSA-------EMIAEAGRHGLDNVEFR 95
Query: 219 QKDARDFLQTDARAHLV 235
Q+D D D + V
Sbjct: 96 QQDLFD-WTPDRQWDAV 111
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 30.6 bits (69), Expect = 0.59
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+ VL+ G G + G V + + +
Sbjct: 44 KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSRE 78
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; HET: SAH; 2.00A
{Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A
2pkw_A
Length = 258
Score = 30.5 bits (68), Expect = 0.64
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220
V+D AG+G + A G V + NP A L + + ++
Sbjct: 87 DYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQER 146
Query: 221 DARDFLQTDARAHLVRWSQS 240
+ + L +
Sbjct: 147 --LQLIHASSLTALTDITPR 164
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 30.0 bits (67), Expect = 0.68
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNE 208
G V+D G G + + GA V A D++PD+ + +
Sbjct: 47 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVN 98
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 30.3 bits (68), Expect = 0.69
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQA 202
+++ ++ D+ AG SI A+ + A + NP +++
Sbjct: 37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD 82
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 30.7 bits (70), Expect = 0.76
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 245 TGGTAVARVIMNLPATAVEYVR 266
TG A + PA R
Sbjct: 235 TGSADTAATLRAHPAFVQRGAR 256
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 30.1 bits (68), Expect = 0.77
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
E+ E VLD+ +G+G + + GA D+ + + N + I
Sbjct: 52 ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK-----IIF 106
Query: 218 TQKDARD 224
D
Sbjct: 107 EANDILT 113
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 30.5 bits (68), Expect = 0.77
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
+ +VLDV G G S AA+ GA
Sbjct: 154 HTDFKDKIVLDVGCGSGILSFFAAQAGARK 183
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 30.1 bits (68), Expect = 0.91
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQ 219
++D+ +G G + + R + ++ + S+ N Q++ I +
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN--QLEDQIEIIE 105
Query: 220 KDARDFLQ 227
D +
Sbjct: 106 YDLKKITD 113
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 29.9 bits (67), Expect = 0.93
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 153 HERVTKEVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPD 195
H+ + V+EGD V+D G G + A V D+
Sbjct: 13 HDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK 58
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 29.6 bits (67), Expect = 1.1
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLN 207
V + D +LD+ G G I A D+N + + +I+LN
Sbjct: 49 VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN 97
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 30.0 bits (67), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIV 187
+ +VLDV G G S AA+ GA
Sbjct: 46 HTDFKDKIVLDVGCGSGILSFFAAQAGARK 75
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 29.7 bits (66), Expect = 1.2
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
+ + G +D+ A G ++ +R V + D P + S+ + ++
Sbjct: 207 ERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-----MAQSLMDTGQ-----VTW 256
Query: 218 TQKDARDFLQTDARAHLV 235
++D F T + +
Sbjct: 257 LREDGFKFRPTRSNISWM 274
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 29.7 bits (67), Expect = 1.2
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 151 TEHERVTK-EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAWLQASIRLNE 208
E + +VR GD VLDV G+G ++ A V ++ A+ R
Sbjct: 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQ--ANARATA 106
Query: 209 RQVKTPISATQKDARD 224
+ ++ + DA D
Sbjct: 107 AGLANRVTFSYADAMD 122
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial
flagella motor, P transport; NMR {Salmonella
typhimurium}
Length = 169
Score = 29.0 bits (64), Expect = 1.2
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 181 ARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240
R+G A L+P+ + S++L++ Q + + + R L+ A L
Sbjct: 82 TRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALE-AALPMLRTQLAE 140
Query: 241 EGNSTGGTAV 250
G G +++
Sbjct: 141 SGIQLGQSSI 150
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 29.4 bits (66), Expect = 1.3
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
R+ + VLD+ G G A RG D +
Sbjct: 51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDR 84
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 29.2 bits (65), Expect = 1.3
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 154 ERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW-----LQASIRLNE 208
R ++D G G + ++ V D++ + A+I
Sbjct: 48 PRFELLFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRL 107
Query: 209 RQVKTPISATQKDARDF 225
P A Q +
Sbjct: 108 LDGLVPEQAAQIHSEIG 124
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 154 ERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
+ + +E E +VLD+ G + R+ V + DLN
Sbjct: 15 DALEREGLEMKIVLDLGTSTGVITE-QLRKRNTVVSTDLNIR 55
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 29.4 bits (66), Expect = 1.5
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVA---ANDLNPDSYAWLQASIRLNERQVKTPI 215
+ R G VLD F G G ++ AA + A DL+ A + I
Sbjct: 200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEK--RLGLAREAALASGLSW-I 256
Query: 216 SATQKDARDFLQTDARAHLV 235
+ DAR + +
Sbjct: 257 RFLRADARHLPRFFPEVDRI 276
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 29.4 bits (66), Expect = 1.5
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 16/49 (32%)
Query: 139 DFSKVYWNSRLSTEH---------ERV----TKEVREGDLVLDVFAGVG 174
S++ NS H ER+ + G VLD FAG G
Sbjct: 209 RMSRLNGNSLERVGHPTQKPAAVIERLVRALSHP---GSTVLDFFAGSG 254
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 29.0 bits (66), Expect = 1.6
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASI---RLNERQVKTPISA 217
G VLD++AG G + A RGA V + + S A + +I L+ ++
Sbjct: 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLR----- 98
Query: 218 TQKDARDFLQTDARA 232
+ + +
Sbjct: 99 -RGAVAAVVAAGTTS 112
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 29.0 bits (65), Expect = 1.9
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 8/57 (14%)
Query: 145 WNSRLSTEHERVTKE------VREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPD 195
W + +E + G+ +L+V AG G + + +
Sbjct: 13 WYGTPLGAYVIAEEERALKGLLPPGESLLEVGAGTGYWL--RRLPYPQKVGVEPSEA 67
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 28.6 bits (64), Expect = 2.0
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 130 KENGCTFKMDFSKVY--WNSRLSTEHERVTKE-------VREGDLVLDVFAGVGPFSIPA 180
EN F +K + L + E + G +D+ +G G SI
Sbjct: 3 SENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIAL 61
Query: 181 ARR-GAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDA 222
A++ + A D + A + + + I Q D
Sbjct: 62 AKQSDFSIRALDFSKHMNE--IALKNIADANLNDRIQIVQGDV 102
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 28.8 bits (63), Expect = 2.6
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 140 FSKVYWNSRLSTEHERVT---KEVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNP 194
+ K Y S E R+ E G VLD+ VG ++ A + + + D++
Sbjct: 21 YCKYYGYRNPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDS 80
Query: 195 DSYAWLQASIRLNERQ 210
+ +IR +
Sbjct: 81 RLIHSARQNIRHYLSE 96
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 28.9 bits (64), Expect = 2.6
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPD 195
EG VLD+ G G A++ V D+ +
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN 119
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 28.2 bits (63), Expect = 2.7
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 163 GDLVLDVFAGVGPFSIPAARRGAIVAANDLNP 194
++LDV +G G ++ A G + +
Sbjct: 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPAT 73
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 28.5 bits (63), Expect = 3.1
Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 15/115 (13%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAI---VAANDLNPDSYAWLQASIRLNERQVKTP-IS 216
E L++DV G G ++ A+ + +DL+ A + +S
Sbjct: 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIK--TAEVIKEGSPDTYKNVS 92
Query: 217 ATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVI--MNLPATAVEYVRYLK 269
+ DF + + + L+
Sbjct: 93 FKISSSDDF-------KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLR 140
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC;
transcription, proteolysis; 1.50A {Bacillus subtilis}
PDB: 2y1r_A* 2k77_A
Length = 150
Score = 27.6 bits (62), Expect = 3.2
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 21 KVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAIL--PDNVAMSSFTSVGHIVHCNLREE 78
KV+E + A+ H+ V E IL ++ + VA ++G + R++
Sbjct: 86 KVIELSMDEARKLGHSYV-------GTEHILLGLIREGEGVAARVLNNLG-VSLNKARQQ 137
Query: 79 LIE 81
+++
Sbjct: 138 VLQ 140
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 28.1 bits (62), Expect = 3.6
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 15/60 (25%)
Query: 141 SKVYWNSRLSTEHER---------------VTKEVREGDLVLDVFAGVGPFSIPAARRGA 185
YW+ R + + E+R D +L + G S G
Sbjct: 6 EVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGF 65
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 28.1 bits (63), Expect = 4.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 162 EGDLVLDVFAGVG 174
DLVLD F G G
Sbjct: 212 PNDLVLDCFMGSG 224
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 27.5 bits (62), Expect = 4.2
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAI-VAANDLNPDSYAWLQASIRLN 207
+ + + V DV G G +I A + GA V A D++ +S + + LN
Sbjct: 56 RAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN 106
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.9 bits (62), Expect = 4.8
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPD 195
++ LD+ AG G + R+ G + ++ P
Sbjct: 79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV 116
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 27.9 bits (62), Expect = 5.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 162 EGDLVLDVFAGVG 174
DLV+D+F G
Sbjct: 252 PDDLVVDIFGGSN 264
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 27.7 bits (62), Expect = 5.8
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 19/127 (14%)
Query: 115 QMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE---GDLVLDVFA 171
Q + L K + + E ++ + Y ++ L +H + + + G L++F+
Sbjct: 491 QYQKLGEKGEFLEVT-EYNAHLWVNLTD-YLDTGLFLDHRIARRMLGQMSKGKDFLNLFS 548
Query: 172 GVGPFSIPAARRGAIVAAN-DLNPDSYAWLQASIRLNE------RQVKTPISATQKDARD 224
G ++ A GA D++ W + ++RLN R + Q D
Sbjct: 549 YTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLI-------QADCLA 601
Query: 225 FLQTDAR 231
+L+
Sbjct: 602 WLREANE 608
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 27.9 bits (61), Expect = 5.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 169 VFAGVGPF--SIPAARRGAIVAAND-LNPD-SYAWL 200
+ VGP GA++A+ ++PD Y W
Sbjct: 17 LLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWT 52
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 27.4 bits (61), Expect = 6.0
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 166 VLDVFAGVGPFSIP---AARRGAIVAANDLNPDSYAWLQASIRLN 207
VL++++GVG + +VAA D+N + + N
Sbjct: 5 VLELYSGVGGMHHALRESCIPAQVVAAIDVNTVA----NEVYKYN 45
>4en2_B Protein NEF; human immunodeficiency virus 1, HIV, NEF, antigen
presentation, HOST defense, adaptor protein complex 1,
MU1 subunit; 2.58A {Human immunodeficiency virus 1} PDB:
4emz_C 2xi1_A 2xi1_B 1qa5_A* 1qa4_A 1zec_A
Length = 206
Score = 27.3 bits (61), Expect = 6.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 172 GVGPFSIPAARRGAIVAAN--DLNPDSYAWLQA 202
GVG S + GAI ++N N AWL+A
Sbjct: 29 GVGAVSRDLEKHGAITSSNTAANNAAC-AWLEA 60
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 27.3 bits (61), Expect = 6.5
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 166 VLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLN 207
++ +F+G G + + G I+ AN+ + + N
Sbjct: 3 LISLFSGAGGLDLGFQKAGFRIICANEYDKSI----WKTYESN 41
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 27.3 bits (61), Expect = 6.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 162 EGDLVLDVFAGVG 174
GD+VLD FAG G
Sbjct: 235 VGDVVLDPFAGTG 247
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide
degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A
{Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A*
3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Length = 472
Score = 27.4 bits (60), Expect = 7.2
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 178 IPAARRGAIVAANDL-NPD-SYAWL 200
+ A G +VA+ NPD Y W
Sbjct: 29 VSGADSGIVVASPSTDNPDYFYTWT 53
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 27.5 bits (62), Expect = 7.6
Identities = 8/34 (23%), Positives = 9/34 (26%)
Query: 245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGK 278
TG V I + K E GK
Sbjct: 259 TGSLEVGLKIYEAAGRLAPGQTWFKRAYVETGGK 292
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics,
PSI2, MCSG, protein structure initiative; 1.60A
{Corynebacterium glutamicum}
Length = 146
Score = 26.5 bits (59), Expect = 8.5
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 21 KVLENAKLTAKDFTHAEVLLTYDNFSAEDILKAIL--PDNVAMSSFTSVGHIVHCNLREE 78
KVLE + H + E +L ++ + VA +G +R++
Sbjct: 88 KVLELSLREGLQMGHKYI-------GTEFLLLGLIREGEGVAAQVLVKLG-ADLPRVRQQ 139
Query: 79 LIE 81
+I+
Sbjct: 140 VIQ 142
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 27.2 bits (61), Expect = 8.9
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 245 TGGTAVARVIMNLPATAVEYVRYLKVLTREEFGK 278
TG V + A +LK + E GK
Sbjct: 258 TGSKDVGVRLYERAAVVRPGQNHLKRVIVEMGGK 291
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 26.7 bits (59), Expect = 8.9
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNP 194
G ++D+ G G F A GA V DL+
Sbjct: 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE 76
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 27.1 bits (60), Expect = 9.4
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 46 SAEDILKAILP-DNVAMSSFTSVGH 69
+AE+ + + DNV S FT G+
Sbjct: 7 TAEEAAEFVHHNDNVGFSGFTPAGN 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,966,889
Number of extensions: 298376
Number of successful extensions: 893
Number of sequences better than 10.0: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 139
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)