RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16898
(324 letters)
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 117 bits (295), Expect = 6e-32
Identities = 55/237 (23%), Positives = 98/237 (41%), Gaps = 32/237 (13%)
Query: 62 SSFTSVGHIVHCNLREELIEHKFIIGRVLLDKVPSCETVVNKAHTIDNTYRNFQMELLAG 121
+ +G ++ LR EL +K I V + V +TV+ K H I R ELL G
Sbjct: 10 KRWVRIGDVLLLPLRPELEPYKHRIAEVYAE-VLGVKTVLRKGH-IHGETRKPDYELLYG 67
Query: 122 KDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAA 181
D + H ENG +K+D +K+ ++ E R+ K + +LV+D+FAG+G S+P A
Sbjct: 68 SDTVTV-HVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIA 126
Query: 182 RRGAI-VAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240
G V A + +P ++ +L +I LN +D D R
Sbjct: 127 VYGKAKVIAIEKDPYTFKFLVENIHLN----------KVEDRMSAYNMDNRDFPGENI-- 174
Query: 241 EGNSTGGTAVARVIMNLPATAVEYVRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLE 297
R++M E++ + ++ +++ + +P+ +
Sbjct: 175 ---------ADRILMGYVVRTHEFIPKALSIAKDG-------AIIHYHNTVPEKLMP 215
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 143 VYWNSRLSTEHERVTK--EVREGDLVLDVFAGVGPFSIPAARRGAI--VAANDLNPDSYA 198
V++N R++ + V + +VLD + G I A V ND++ D+Y
Sbjct: 24 VFYNPRMALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE 83
Query: 199 WLQASIRLN 207
++ ++ LN
Sbjct: 84 LMKRNVMLN 92
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 40.7 bits (94), Expect = 1e-04
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
+ + +VLDV G G S+ AA+ GA V D + QA + +++ I+
Sbjct: 31 PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTIT 87
Query: 217 ATQKDARDFLQTDARAHLVRWS 238
+ + + ++
Sbjct: 88 LIKGKIEEVHLPVEKVDVIISE 109
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 40.2 bits (93), Expect = 2e-04
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
K++ + +VLDV G G S+ AA+ GA V D++ A + I+
Sbjct: 34 KDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKIT 90
Query: 217 ATQKDARDFLQTDARAHLV 235
+ D + ++
Sbjct: 91 LLRGKLEDVHLPFPKVDII 109
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 38.6 bits (89), Expect = 3e-04
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
E + D+ +DV G G ++ A R V A D NP+ A + L + ++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE--AISTTEMNLQRHGLGDNVTLM 87
Query: 219 QKDARDFLQTDARAHLV 235
+ DA + L +
Sbjct: 88 EGDAPEALCKIPDIDIA 104
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 39.2 bits (91), Expect = 4e-04
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 9/112 (8%)
Query: 136 FKMDFSKVYWNSRL---STEHERVTKEV----REGDLVLDVFAGVGPFSIPAARRGAIVA 188
+DF R E V K V V+D AG+G + A G V
Sbjct: 55 IFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVR 114
Query: 189 ANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQS 240
+ NP A L + + ++ + + L +
Sbjct: 115 MLERNPVVAALLDDGLARGYADAEIGGWLQER--LQLIHASSLTALTDITPR 164
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 39.4 bits (91), Expect = 4e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
+ + + +VLDV +G G + AA+ GA V + + S ++ V T I
Sbjct: 29 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTII- 87
Query: 217 ATQKDARDFLQTDARAHLV 235
+ + + ++
Sbjct: 88 --KGKVEEVELPVEKVDII 104
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 37.8 bits (87), Expect = 0.001
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 130 KENGCTFKMDFSKVYWNSRLSTEHERVTKEVRE-------GDLVLDVFAGVGPFSIPAAR 182
G F F+ + + + E + ++ VL++F G S+ AA
Sbjct: 94 SLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAA 152
Query: 183 RGAIVAANDLNPDSYAWLQASIRLNERQVKTPISATQKDARDF 225
GA V D + + W + + L + + PI +DA F
Sbjct: 153 AGAEVTHVDASKKAIGWAKENQVLAGLE-QAPIRWICEDAMKF 194
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 37.2 bits (85), Expect = 0.001
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
E R VLD+ AG G ++ + D +
Sbjct: 13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEV 53
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 35.7 bits (81), Expect = 0.005
Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 12/140 (8%)
Query: 145 WNSRLSTEHERVTKEVRE--GDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQA 202
SR + + +R+ VLDV G G SI G V + D + + A
Sbjct: 37 TRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKY--A 94
Query: 203 SIRLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAV 262
R+ + + ++L D + +LP +
Sbjct: 95 LKERWNRRKEPAFDKWVIEEANWLTLDKDVPA------GDGFDAVICLGNSFAHLPDSKG 148
Query: 263 EYVRYLKVLTREEFGKLSRP 282
+ + L + + RP
Sbjct: 149 DQSEHRLAL--KNIASMVRP 166
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 35.4 bits (80), Expect = 0.006
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
++ + VLDV G G + A V A DL D
Sbjct: 12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKV 52
>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis
[TaxId: 476]}
Length = 256
Score = 33.5 bits (75), Expect = 0.027
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 161 REGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNE 208
DLVLD F G G +I A + G D+N + QA+ LN+
Sbjct: 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVN--QANFVLNQ 256
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 201
Score = 31.7 bits (71), Expect = 0.079
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQASIRLNERQVKTPISATQK 220
EG +V D+ AG G S A GA V +++ ++ L ++ + + K I +
Sbjct: 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE 105
Query: 221 DARDF 225
Sbjct: 106 FNSRV 110
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 31.9 bits (71), Expect = 0.094
Identities = 7/38 (18%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 166 VLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQA 202
++ +F+G G + + G I+ AN+ + + ++
Sbjct: 3 LISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYES 40
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 31.7 bits (71), Expect = 0.11
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
++ + DL +D+ +GVG + A + + + R + +K
Sbjct: 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMK--WY 205
Query: 217 ATQKDARDFLQTDARAH 233
+ + D +
Sbjct: 206 GKKHAEYTLERGDFLSE 222
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas
syringae [TaxId: 317]}
Length = 201
Score = 30.8 bits (68), Expect = 0.15
Identities = 8/54 (14%), Positives = 13/54 (24%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
V G VL G + +G V +L+ +
Sbjct: 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITS 70
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 31.1 bits (69), Expect = 0.15
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 166 VLDVFAGVGPFSIPAARRGA-IVAANDLNPDSYAWLQA 202
+D+FAG+G F + GA V +N+ + + +
Sbjct: 14 FIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEM 51
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 30.2 bits (67), Expect = 0.18
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLN 193
G VLD+FAG G +I A RG A
Sbjct: 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEK 45
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 30.8 bits (68), Expect = 0.20
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 166 VLDVFAGVGPFSIPAARRG---AIVAANDLNPDSYAWLQA 202
VL++++GVG +VAA D+N + +
Sbjct: 5 VLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKY 44
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 30.3 bits (67), Expect = 0.24
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 158 KEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVKTPISA 217
+ GD VLD+ G G + R G ++ + A +R + + +
Sbjct: 20 LYTKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 218 TQKDARDFLQTDARAHLVRWSQ 239
+D+ + V SQ
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQ 100
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase
TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Length = 204
Score = 29.9 bits (66), Expect = 0.35
Identities = 11/111 (9%), Positives = 29/111 (26%), Gaps = 5/111 (4%)
Query: 161 REGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPISAT 218
+ + ++V +G G F A++ D+ ++ + +
Sbjct: 30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLL--- 86
Query: 219 QKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEYVRYLK 269
D D + R + + + + + R L
Sbjct: 87 WVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILP 137
>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA
methyltransferase {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 279
Score = 30.1 bits (66), Expect = 0.37
Identities = 16/104 (15%), Positives = 22/104 (21%), Gaps = 6/104 (5%)
Query: 102 NKAHTIDNTYRNFQMELLAGKDCMVTMHKENGCTFKMDFSKVYWNSRLSTEHERVTKEVR 161
K ++ RL
Sbjct: 153 MKDKRLNPESVEKGRNPTNVWRMSRLNGNSLERVGHPTQKPAAVIERLVRALSH------ 206
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIR 205
G VLD FAG G + A + G D P + Q +
Sbjct: 207 PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLT 250
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 29.6 bits (65), Expect = 0.45
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 139 DFSKVY-----WNSRLSTEHERVTKEVREGDL----VLDVFAGVGPFSIPAARRGAIVAA 189
F+ +Y + + + ++ E +L LD+ G G + + A
Sbjct: 5 KFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWA 64
Query: 190 NDLNPDSYAW 199
DL+ + +
Sbjct: 65 VDLSQEMLSE 74
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 29.0 bits (64), Expect = 0.72
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIRLNERQVKTPI 215
++ GD VL+ +G G S+ ++ V + ++ D + + + + K
Sbjct: 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH 154
Query: 216 SATQKDARDFLQTDARAHLVRWSQSE 241
D DF+ D
Sbjct: 155 VEEWPDNVDFIHKDISGATEDIKSLT 180
>d1ttwa_ d.198.1.1 (A:) Putative YopH chaperone SycH {Yersinia
pestis [TaxId: 632]}
Length = 118
Score = 27.4 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 233 HLVRWSQSEGNSTGGTAVARVIMNLPATAV 262
H + WSQ N T GT +A V+ +L AV
Sbjct: 86 HWLLWSQLNINDTSGTQLASVLTSLVDKAV 115
>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA
methyltransferase {Proteus vulgaris [TaxId: 585]}
Length = 320
Score = 28.6 bits (62), Expect = 1.2
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAWLQASIRLNERQVK 212
DLV+D+F G + A R + ++ P+ A ++ R + +
Sbjct: 250 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVA--ASAFRFLDNNIS 298
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 28.1 bits (62), Expect = 1.4
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR--GAIVAANDLNPDSYAWLQASIRLNERQVKTPIS 216
++++GD +D+ +GVG + AA A+ ++ D+ +++ K
Sbjct: 213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM 272
Query: 217 ATQKDARDFLQTDARAHLVR 236
++ + V
Sbjct: 273 RLNNVEFSLKKSFVDNNRVA 292
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 28.0 bits (61), Expect = 1.6
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR-GAIVAANDLNPDSYAW 199
++ G +LD+ +G G AR G D++ A
Sbjct: 30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQ 71
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 27.6 bits (60), Expect = 2.0
Identities = 3/34 (8%), Positives = 14/34 (41%)
Query: 166 VLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
+L++ + G F+ + + + ++ +
Sbjct: 24 LLELGSFKGDFTSRLQEHFNDITCVEASEEAISH 57
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 27.3 bits (60), Expect = 2.3
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAWLQASIR 205
+R G +L+V G G S + + + D+ ++
Sbjct: 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 27.5 bits (60), Expect = 2.4
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 181 ARRGAIVAANDLNPDSYAWLQASIRLNERQVKT-PISATQKDARDFLQTDARAHL 234
A G +A D+N ++ +AS+R + ++ T ++A
Sbjct: 26 AEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 162 EGDLVLDVFAGVGPFSIPAARRGAIVAAN-DLNPDSYAWLQASIRLNE 208
G V+D G G + + GA D++PD+ + +
Sbjct: 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVN 95
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 26.9 bits (58), Expect = 3.3
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 140 FSKVYWNSRLSTEHERVTKEVREGDLVLDVFAGVGPFSIPAARRGAIVAANDLNPDSYAW 199
F++ Y +R ++ K V G LD+ G G S+ A G V A D NP S A
Sbjct: 9 FTEKYGLTRTHSDVLAAAKVVAPGR-TLDLGCGNGRNSLYLAANGYDVTAWDKNPASMAN 67
Query: 200 LQA 202
L+
Sbjct: 68 LER 70
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 25.8 bits (55), Expect = 7.5
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 159 EVREGDLVLDVFAGVGPFSIPAARR---GAIVAANDLNPDSYAW 199
E G VL+ GPF +++P +
Sbjct: 16 EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL 59
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 25.7 bits (56), Expect = 8.1
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 2/95 (2%)
Query: 205 RLNERQVKTPISATQKDARDFLQTDARAHLVRWSQSEGNSTGGTAVARVIMNLPATAVEY 264
RL K + Q A L +E + IM T
Sbjct: 115 RLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMEST 174
Query: 265 VRYLKVLTREEFGKLSRPPVLYLYCFLPKMDLETK 299
+ + FG + + LP M + K
Sbjct: 175 KEFFTKH--KYFGLKKENVIFFQQGMLPAMSFDGK 207
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,328
Number of extensions: 54790
Number of successful extensions: 194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 42
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)