BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy169
         (280 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
           Aspergillus Fumigatus, Revealing The Structural Basis
           For Its Heat Resilience And Catalytic Pathway
          Length = 442

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 155 LDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAER 192
           L +  V   KE  G  + W++PFG R   ETM+  +E+
Sbjct: 356 LSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEK 393


>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
 pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
           Phytase Revealing Its Enzymatic Dynamics
          Length = 439

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 155 LDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAER 192
           L +  V   KE  G  + W++PFG R   ETM+  +E+
Sbjct: 353 LSRTSVESAKELDGYSASWVVPFGARAYFETMQCKSEK 390


>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K
 pdb|1MZD|A Chain A, Crystal Structure Of Human Pro-Granzyme K
          Length = 240

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 4/38 (10%)

Query: 129 ELKKFTPASRITKADKENNVKSMQ----RKLDKHLVLL 162
           E+KKF P SR+T   + N++  ++     KL+KH+ +L
Sbjct: 74  EIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKML 111


>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
           Bacillus Thuringiensis
 pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
           Bacillus Thuringiensis
          Length = 171

 Score = 27.3 bits (59), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETM 186
           VLL+K+K+ ++  W +P G+ + GET+
Sbjct: 36  VLLVKQKVANRD-WSLPGGRVENGETL 61


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,694,957
Number of Sequences: 62578
Number of extensions: 297578
Number of successful extensions: 677
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 11
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)