BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy169
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RK00|RM46_RAT 39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus
GN=Mrpl46 PE=2 SV=1
Length = 277
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 154/249 (61%), Gaps = 11/249 (4%)
Query: 36 TTTSGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQ 95
S SR W L A+CL+R PLIT+ +++++ L+ ++E+E S+ SDHELR + +
Sbjct: 34 AAPSSSRSPWRLSGALCLQRPPLITKPLTPLQEEMAGLLQQVEVERSLYSDHELRALDEA 93
Query: 96 IRAEKMKDKSLNVDMIDDALQQ---TGQDFVDMGLNELKKFTPASRITKADKENNVKSMQ 152
R K K D+ D+ Q QD DM E +F P +R T+ADK+N+ S+
Sbjct: 94 QRLAKKK-----ADLYDEEQDQDVTLAQDLEDMWEQEFLQFRPGARETEADKKNDRTSLH 148
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212
RKLD++L+LL++EKLGD+ W++P + Q GET+R TAERILA + A+F GNAPC
Sbjct: 149 RKLDRNLILLVREKLGDQDLWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPC 208
Query: 213 GFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV--KDKKLEYTWAAREELPKLLLEDYN 270
G YKFK+PK+++ ES+ +G K+FFFKA L GD KK + WA++EEL L Y
Sbjct: 209 GHYKFKFPKAIRTESD-LGVKVFFFKALLLTGDFVQTGKKGRHVWASKEELGDYLQPKYL 267
Query: 271 KNISLFLMD 279
+ FL+D
Sbjct: 268 AQVRRFLLD 276
>sp|Q3SZ22|RM46_BOVIN 39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46
PE=2 SV=1
Length = 277
Score = 191 bits (486), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 100/249 (40%), Positives = 156/249 (62%), Gaps = 11/249 (4%)
Query: 36 TTTSGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQ 95
S S W L+ A+CL+R PL+++ +++++ L+ ++E+E S+ SDHELR + +
Sbjct: 34 AAPSNSASPWRLLGALCLQRPPLVSKQLTPMQEEMAALLQQMEIERSLYSDHELRALDEA 93
Query: 96 IRAEKMKDKSLNVDMIDDALQQT---GQDFVDMGLNELKKFTPASRITKADKENNVKSMQ 152
+ EK K D+ ++ ++ QD DM + +F P +RIT AD +N+ S+
Sbjct: 94 EQLEKKKS-----DLYEEKDEKNILLVQDLEDMWEQKFLQFKPGARITDADVKNDRSSLH 148
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212
RKLD++L+LL+K+KLGD+ W++P + Q GET+RQTAER LA + A+F GNAPC
Sbjct: 149 RKLDRNLILLVKDKLGDQDVWMLPQAEWQPGETLRQTAERTLATLSENNLEAKFLGNAPC 208
Query: 213 GFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKD--KKLEYTWAAREELPKLLLEDYN 270
G YKFK+P++++AE + +GAK+FFFKA L GD +K + WA++EEL L Y
Sbjct: 209 GHYKFKFPQAVRAEGS-LGAKIFFFKALLLTGDFSPAVEKGRHVWASKEELGDYLKPKYL 267
Query: 271 KNISLFLMD 279
+ FL+D
Sbjct: 268 AQVRRFLLD 276
>sp|Q9EQI8|RM46_MOUSE 39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46
PE=2 SV=1
Length = 283
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 49 SAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKSLNV 108
A+CL+R PLIT+ +++++ L+ ++E+E S+ SDHELR + + R K K
Sbjct: 47 GALCLQRPPLITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKK-----A 101
Query: 109 DMIDDALQQT---GQDFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKE 165
D+ D+ +Q QD DM +F P +R T+ADK+N+ S+ RKLD++LVLL++E
Sbjct: 102 DLYDEEQEQGITLAQDLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVRE 161
Query: 166 KLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQA 225
KLGD+ W++P + Q GET+R TAERILA + A+F GNAPCG YKFK+PK++Q
Sbjct: 162 KLGDQDVWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQT 221
Query: 226 ESNVVGAKLFFFKAQYLEGDV--KDKKLEYTWAAREELPKLLLEDYNKNISLFLMD 279
ES+ +G K+FFFKA L GD KK + WA++EEL L Y + FL+D
Sbjct: 222 ESD-LGVKVFFFKALLLTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLD 276
>sp|Q9H2W6|RM46_HUMAN 39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46
PE=1 SV=1
Length = 279
Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 149/249 (59%), Gaps = 11/249 (4%)
Query: 36 TTTSGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQ 95
S + W L+ A+CL+R P++++ +++++ L+ ++E+E S+ SDHELR + +
Sbjct: 36 AAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDEN 95
Query: 96 IRAEKMKDKSLNVDMIDDALQQT---GQDFVDMGLNELKKFTPASRITKADKENNVKSMQ 152
R K K D+ D+ +Q QD DM + +F +RIT+AD++N+ S+
Sbjct: 96 QRLAKKK-----ADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLN 150
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212
RKLD++LVLL++EK GD+ WI+P + Q GET+R TAER LA + A+F GNAPC
Sbjct: 151 RKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPC 210
Query: 213 GFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYN 270
G Y FK+P++++ ESN +GAK+FFFKA L GD K + W ++EL L Y
Sbjct: 211 GHYTFKFPQAMRTESN-LGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYL 269
Query: 271 KNISLFLMD 279
+ F+ D
Sbjct: 270 AQVRRFVSD 278
>sp|Q5RBU2|RM46_PONAB 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46
PE=2 SV=1
Length = 279
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
Query: 39 SGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRA 98
S + W L+ A+CL+R P +++ ++++ L+ ++E+E S+ SDHELR + + R
Sbjct: 39 SSNGSPWRLLGALCLQRPPAVSKPLTPFQEEMASLLQQIEIERSLYSDHELRALDENQRL 98
Query: 99 EKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKH 158
K+ D D+ QD DM +F +RIT+AD++N+ S+ RKLD++
Sbjct: 99 --AGKKADLYDEEDEEDILLAQDLEDMWEQTFLQFKLGARITEADEKNDRTSLNRKLDRN 156
Query: 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
LVLL++EK GD+ WI+P + Q GET+R TAER LA + A+F GNAPCG Y FK
Sbjct: 157 LVLLVREKFGDQDVWILPQTEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFK 216
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYNKNISLF 276
+P++++ ESN +GAK+FFFKA L GD K + W ++EL L Y + F
Sbjct: 217 FPQAMRTESN-LGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRF 275
Query: 277 LMD 279
L D
Sbjct: 276 LSD 278
>sp|P36528|RM17_YEAST 54S ribosomal protein L17, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1
SV=2
Length = 281
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 51/267 (19%)
Query: 50 AVCLERKPLITRDFNEIEKKVQLLMNELE------------LENSMKSDHEL-------- 89
V L R P+I + NE+EKK +ELE + ++H+
Sbjct: 28 GVLLSRIPIIKSELNELEKKYYEYQSELEKRLMWTFPAYFYFKKGTVAEHKFLSLQKGPI 87
Query: 90 ---------RCIADQIRAEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKK-FTPASRI 139
R I D I+ + + V + DD+ + + +++ + P RI
Sbjct: 88 SKKNGIWFPRGIPD-IKHGRERSTKQEVKLSDDSTVAFSNNQKEQSKDDVNRPVIPNDRI 146
Query: 140 TKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMP-FGKRQEGETMRQTAERILAEKF 198
T+AD+ N++KS++R+L + L LL+K+K G W P F E + + AE L
Sbjct: 147 TEADRSNDMKSLERQLSRTLYLLVKDKSGT---WKFPNFDLSDESKPLHVHAENELKLLS 203
Query: 199 NKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV------KDKKLE 252
I+ P G LQ E N F K+ L G D +
Sbjct: 204 GDQIYTWSVSATPIGV--------LQDERNRTAE--FIVKSHILAGKFDLVASKNDAFED 253
Query: 253 YTWAAREELPKLLLEDYNKNISLFLMD 279
+ W + E+ + + +DY L D
Sbjct: 254 FAWLTKGEISEYVPKDYFNKTEFLLAD 280
>sp|O94398|RM17_SCHPO 54S ribosomal protein L17, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl17 PE=3 SV=1
Length = 268
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 50 AVCLERKPLITRDFNEIEKKVQLLMNEL--ELENSMKSDHELR--CIAD---QIRAEKMK 102
L R P++TR +E EK + EL EL + + ++ + + + Q R + +K
Sbjct: 44 GTILIRSPILTRQPSEFEKSIYKYNAELWNELSDPLPAEFYFKKGSVGEKDWQERQKTLK 103
Query: 103 DKSLNVDMIDDALQQTGQDFVDMGLNELKKFTP--ASRITKADKENNVKSMQRKLDKHLV 160
K + I G++ +M N+L SR+T+AD +N+ +S R LDK L
Sbjct: 104 GKESPFETI------FGKERKEMESNKLLDSATHLQSRVTEADTKNDERSTLRSLDKSLY 157
Query: 161 LLIKEKLGDKSHWIMP 176
LL+K+ S W P
Sbjct: 158 LLVKK--SKSSGWQFP 171
>sp|Q91YD4|TRPM2_MOUSE Transient receptor potential cation channel subfamily M member 2
OS=Mus musculus GN=Trpm2 PE=2 SV=1
Length = 1507
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 126 GLNELKKFTP---ASRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQE 182
G L F P + K N ++ RK + ++ ++ KL HW +P G R+
Sbjct: 1332 GRGSLSWFGPNHTLQPVVTRWKRNQGGAICRKSVRKMLEVLVMKLPRSEHWALPGGSREP 1391
Query: 183 GETMRQTAERILAEKF 198
GE + + +R+L ++F
Sbjct: 1392 GEMLPRKLKRVLRQEF 1407
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1 SV=4
Length = 1788
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 60 TRDFNEIEKKVQLLMNELE-----LENSMKSDHELRCIADQIRAE--KMKDKSLNVDMID 112
T +F+E++KK+Q + N L+ L + K D+E + + DQ++A ++ + N+D I
Sbjct: 1227 TSEFSELDKKLQHIRNLLQNTSVSLVDIEKLDYETQSLRDQLQASHGRLSETEQNLDDIY 1286
Query: 113 DALQQTGQDFVDMGLNELKKFTPASR----ITKADKENNVKSMQRKLDKHLVL 161
++L +G EL+ SR ++K KEN ++ + ++ L L
Sbjct: 1287 NSLSLSGV--------ELESLQNHSRLVQQLSKELKENGIQLQESNIEGALNL 1331
>sp|Q10218|PPC89_SCHPO Spindle pole body protein ppc89 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ppc89 PE=1 SV=1
Length = 783
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 58 LITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKSLNVDMIDDALQQ 117
++ R+ NE K+ L ++LEL + D EK + +SL M + L +
Sbjct: 302 ILKRERNECNAKIDELQDKLEL------------LTDAYNREKRRARSLEERMSKEMLTK 349
Query: 118 TGQDFVDMGLNELKKFTPASRITKADKE-----NNVKSMQRKLDKHLVLLIKEKLGDKSH 172
G+ VD G+ ASR +E ++KS+Q + + H+ + K L D+
Sbjct: 350 LGESNVDDGM-------AASRYDTVKREKERLSEHLKSLQEQYE-HIQSVYKNVLLDRES 401
Query: 173 WIMPFGKRQEGETMRQTAERILAEKF 198
+IM G + R+L EK
Sbjct: 402 YIMRLGNKISENNELLNENRVLKEKL 427
>sp|Q03K79|HIS7_STRTD Imidazoleglycerol-phosphate dehydratase OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=hisB PE=3
SV=1
Length = 194
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 105 SLNVDMIDDALQQTGQDFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVL--L 162
SLN+D D QTG F D L + S + KAD + V S D +VL
Sbjct: 18 SLNLDAQDPVDIQTGVGFFDHMLTLFARHGRMSLVVKADGDLWVDSHHTVEDVGIVLGQA 77
Query: 163 IKEKLGDKS 171
+KE LGDK+
Sbjct: 78 LKEALGDKA 86
>sp|A5ISW6|EBH_STAA9 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH9) GN=ebh PE=4 SV=1
Length = 10624
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 65 EIEKKVQLLMNELELENSMKSDHELRCIADQI-RAEKMKDKSLNVDMIDDALQQTGQDFV 123
+++K+VQ L++E++ +N +D E + + D+I + + +N M + ++Q
Sbjct: 9815 DVDKQVQALIDEID-QNPNLTDKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLA 9873
Query: 124 DMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEK--LGDKSHWIMPFGKRQ 181
L E+K A K D + V+++ ++D++ L KEK L D+ + I+ G
Sbjct: 9874 Q-ALKEIKDLVKAKENAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHND 9932
Query: 182 EGETMRQ 188
M +
Sbjct: 9933 INNAMTK 9939
>sp|A6U1Q5|EBH_STAA2 Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain JH1) GN=ebh PE=4 SV=1
Length = 10624
Score = 32.7 bits (73), Expect = 3.0, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 65 EIEKKVQLLMNELELENSMKSDHELRCIADQI-RAEKMKDKSLNVDMIDDALQQTGQDFV 123
+++K+VQ L++E++ +N +D E + + D+I + + +N M + ++Q
Sbjct: 9815 DVDKQVQALIDEID-QNPNLTDKEKQALKDRINQILQQGHNGINNAMTKEEIEQAKAQLA 9873
Query: 124 DMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEK--LGDKSHWIMPFGKRQ 181
L E+K A K D + V+++ ++D++ L KEK L D+ + I+ G
Sbjct: 9874 Q-ALKEIKDLVKAKENAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQGHND 9932
Query: 182 EGETMRQ 188
M +
Sbjct: 9933 INNAMTK 9939
>sp|Q10040|YQA4_CAEEL Putative zinc protease C28F5.4 OS=Caenorhabditis elegans GN=C28F5.4
PE=3 SV=2
Length = 856
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 28/202 (13%)
Query: 16 IKLLRNFNTASAVNPLRQELTTTSGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMN 75
IK+L+ F+ V+ E T S+E D++ +V +PL RD + +++QL+
Sbjct: 614 IKMLQAFHMELFVHGNSTEKDTLQLSKELSDILKSVAPNSRPL-KRDEHNPHRELQLING 672
Query: 76 ELELENSMKSDHELRC--IADQIRAEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKKF 133
+ + H++ C +A QI +Q T + V+ LNEL K
Sbjct: 673 HEHVYRHFQKTHDVGCVEVAFQI-----------------GVQSTYNNSVNKLLNELIK- 714
Query: 134 TPASRITKADKE--NNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEG--ETMRQT 189
PA I + ++ NV + R D ++ L + + + + ++ +R E E+ R+
Sbjct: 715 NPAYTILRTNEALGYNVSTESRLNDGNVYLHVIVQGPESADHVL---ERIEVFLESAREE 771
Query: 190 AERILAEKFNKTIHARFYGNAP 211
+ E F+ + A F N P
Sbjct: 772 IVAMPQEDFDYQVWAMFKENPP 793
>sp|A0AG18|HIS7_LISW6 Imidazoleglycerol-phosphate dehydratase OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=hisB PE=3 SV=1
Length = 194
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 95 QIRAEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKKFTPASRITKADKENNVKSMQRK 154
++ AE + S+N+D ++ TG F+D L K + + KAD + V +
Sbjct: 8 RVTAETSIELSINLDSAAESTIATGIGFLDHMLTLFAKHSRINLNVKADGDTRVDAHHTV 67
Query: 155 LDKHLVLLI--KEKLGDKS 171
D + L I KE LGDK+
Sbjct: 68 EDVGITLGICLKEALGDKA 86
>sp|Q16NZ8|SCC4_AEDAE MAU2 chromatid cohesion factor homolog OS=Aedes aegypti
GN=AAEL011819 PE=3 SV=1
Length = 620
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 21/131 (16%)
Query: 83 MKSDHELRCIADQIRAEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKK--FTPASRIT 140
MK + ELR I DQ++ E + + M G + GLN K F A R
Sbjct: 417 MKREQELRQILDQVQQENSQCSNSQALM--------GSFYYVQGLNAFHKSSFHEAKRFL 468
Query: 141 KAD-KENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFN 199
+ K N + + R LVLL SH + G +E M A + LA K
Sbjct: 469 RETLKMANAEDLNRLTSCSLVLL--------SHVFLSIGNSKESMNMVTPAMQ-LASKI- 518
Query: 200 KTIHARFYGNA 210
IH + +G+A
Sbjct: 519 PDIHVQLWGSA 529
>sp|O94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2
OS=Homo sapiens GN=TRPM2 PE=1 SV=2
Length = 1503
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 144 KENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEK 197
+ N ++ RK K ++ ++ KL HW +P G R+ GE + + +RIL ++
Sbjct: 1356 RRNEDGAICRKSIKKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQE 1409
>sp|Q4QMV1|RECX_HAEI8 Regulatory protein RecX OS=Haemophilus influenzae (strain 86-028NP)
GN=recX PE=3 SV=1
Length = 152
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 80 ENSMKSDHELRCIADQIRAEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKKFTP 135
EN + S + C +IR E + K ++ D+ID+ L ++ D+ +M N L+K P
Sbjct: 57 ENYLNSRSQKGCGVGRIRQELRQLKGVSSDIIDEVLMESEIDWYEMAENLLRKKFP 112
>sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain MW2) GN=ebh PE=1 SV=1
Length = 9904
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 65 EIEKKVQLLMNELELENSMKSDHELRCIADQI-----RAEKMKDKSLNVDMIDDALQQTG 119
+++K+VQ L++E++ N +D E + + D+I + + +L + I+ A Q
Sbjct: 9095 DVDKQVQALIDEID-RNPNLTDKEKQALKDRINQILQQGHNDINNALTKEEIEQAKAQLA 9153
Query: 120 QDFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEK--LGDKSHWIMPF 177
Q L E+K A K D + V+++ ++D++ L KEK L D+ + I+
Sbjct: 9154 Q-----ALQEIKDLVKAKENAKQDVDKQVQALIDEIDQNPNLTDKEKQALKDRINQILQQ 9208
Query: 178 GKRQEGETMRQ 188
G M +
Sbjct: 9209 GHNDINNAMTK 9219
>sp|Q12704|DPOG_SCHPO DNA polymerase gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=mip1 PE=3 SV=2
Length = 1018
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 50 AVCLERKPLITRDF-------NEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMK 102
A L+ L TR F NE+ + V + +++++ ++ D ++ C+ +
Sbjct: 903 AFALQVANLWTRAFFCQRLGINELPQSVAFF-SSVDIDHVLRKDVKMDCVTPSNKVPIPP 961
Query: 103 DKSLNVDMIDDALQQTGQD---------FVDMGLNELKKFTPASRITKADKEN 146
+ L ++ + + L+Q+GQ FVD+ K T ++ IT+ DK+N
Sbjct: 962 GEELTIESVLEKLEQSGQSLEPLEQIQCFVDV------KATTSAEITEEDKKN 1008
>sp|B3CM46|RPPH_WOLPP RNA pyrophosphohydrolase OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rppH PE=3 SV=1
Length = 162
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 127 LNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETM 186
++E K++ P I +K+ N+ I ++ S+W MP G EGE +
Sbjct: 2 ISEEKEYRPCVGIMLFNKQGNI-------------FIGKRFDSDSYWQMPQGGVDEGEEL 48
Query: 187 RQTAERILAEK 197
Q A R L E+
Sbjct: 49 EQAALRELLEE 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,905,419
Number of Sequences: 539616
Number of extensions: 4153201
Number of successful extensions: 12915
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 12859
Number of HSP's gapped (non-prelim): 111
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)