Query psy169
Match_columns 280
No_of_seqs 171 out of 1031
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 16:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4548|consensus 100.0 2.3E-54 4.9E-59 382.4 13.0 240 39-279 20-262 (263)
2 cd04661 MRP_L46 Mitochondrial 100.0 1E-32 2.2E-37 226.9 13.2 130 146-276 1-132 (132)
3 PF11788 MRP-L46: 39S mitochon 99.8 1.1E-20 2.3E-25 151.8 7.0 98 45-143 1-111 (111)
4 PRK15434 GDP-mannose mannosyl 99.6 6.2E-15 1.3E-19 125.6 10.9 117 158-278 29-149 (159)
5 cd03675 Nudix_Hydrolase_2 Cont 99.6 3.4E-14 7.3E-19 115.9 11.4 112 158-279 11-130 (134)
6 cd03673 Ap6A_hydrolase Diadeno 99.6 3.3E-14 7.1E-19 114.6 10.5 102 156-267 14-119 (131)
7 cd04669 Nudix_Hydrolase_11 Mem 99.5 5.1E-14 1.1E-18 113.7 11.0 91 158-264 12-114 (121)
8 cd04680 Nudix_Hydrolase_21 Mem 99.5 5.7E-14 1.2E-18 111.8 11.0 104 158-275 12-119 (120)
9 cd04679 Nudix_Hydrolase_20 Mem 99.5 8E-14 1.7E-18 112.5 11.2 105 158-272 14-123 (125)
10 PRK10546 pyrimidine (deoxy)nuc 99.5 9.7E-14 2.1E-18 113.2 11.7 108 158-277 15-126 (135)
11 cd03671 Ap4A_hydrolase_plant_l 99.5 1.8E-13 3.8E-18 114.2 11.6 113 158-273 15-139 (147)
12 PRK15472 nucleoside triphospha 99.5 1.9E-13 4.1E-18 112.9 11.6 108 158-269 15-131 (141)
13 cd03428 Ap4A_hydrolase_human_l 99.5 1.1E-13 2.4E-18 112.0 9.2 102 156-268 15-119 (130)
14 cd04687 Nudix_Hydrolase_28 Mem 99.5 2.2E-13 4.9E-18 110.4 10.7 104 157-264 11-121 (128)
15 PLN02325 nudix hydrolase 99.5 3.3E-13 7.2E-18 112.7 11.6 112 158-277 20-138 (144)
16 PRK09438 nudB dihydroneopterin 99.5 1.6E-13 3.4E-18 114.3 9.5 112 159-277 20-143 (148)
17 cd04681 Nudix_Hydrolase_22 Mem 99.5 3.6E-13 7.8E-18 109.1 11.2 110 159-277 14-130 (130)
18 cd04683 Nudix_Hydrolase_24 Mem 99.5 2.5E-13 5.3E-18 108.6 9.9 100 158-266 11-116 (120)
19 cd04700 DR1025_like DR1025 fro 99.5 3E-13 6.5E-18 112.4 10.7 97 160-267 27-128 (142)
20 cd04678 Nudix_Hydrolase_19 Mem 99.5 5.6E-13 1.2E-17 108.0 11.9 108 158-277 14-128 (129)
21 cd04673 Nudix_Hydrolase_15 Mem 99.5 3.6E-13 7.7E-18 107.4 10.6 101 158-264 11-114 (122)
22 cd03427 MTH1 MutT homolog-1 (M 99.5 4.2E-13 9.2E-18 109.6 10.6 111 158-278 12-126 (137)
23 cd04684 Nudix_Hydrolase_25 Con 99.5 6.6E-13 1.4E-17 106.5 11.5 109 158-272 11-126 (128)
24 cd03430 GDPMH GDP-mannose glyc 99.5 4.7E-13 1E-17 111.7 10.6 105 158-264 24-132 (144)
25 cd04689 Nudix_Hydrolase_30 Mem 99.4 9.5E-13 2.1E-17 106.2 11.0 98 157-264 11-114 (125)
26 PRK10776 nucleoside triphospha 99.4 1.5E-12 3.2E-17 104.4 12.1 103 159-273 17-123 (129)
27 cd04670 Nudix_Hydrolase_12 Mem 99.4 1.1E-12 2.5E-17 106.0 11.4 107 158-276 14-126 (127)
28 cd04695 Nudix_Hydrolase_36 Mem 99.4 7.6E-13 1.6E-17 108.1 10.4 102 157-267 13-117 (131)
29 cd04666 Nudix_Hydrolase_9 Memb 99.4 6.6E-13 1.4E-17 107.9 9.9 102 157-267 14-118 (122)
30 cd04691 Nudix_Hydrolase_32 Mem 99.4 9.9E-13 2.1E-17 105.6 10.4 94 158-265 11-109 (117)
31 cd04696 Nudix_Hydrolase_37 Mem 99.4 1.4E-12 3E-17 105.4 11.3 98 159-264 15-114 (125)
32 PRK00714 RNA pyrophosphohydrol 99.4 1.2E-12 2.6E-17 110.8 11.2 107 159-267 21-138 (156)
33 TIGR00586 mutt mutator mutT pr 99.4 1.8E-12 3.9E-17 104.3 11.7 98 158-267 16-116 (128)
34 cd03425 MutT_pyrophosphohydrol 99.4 1.8E-12 3.8E-17 102.7 11.4 96 158-265 13-111 (124)
35 cd04664 Nudix_Hydrolase_7 Memb 99.4 8.7E-13 1.9E-17 107.0 9.0 104 157-267 14-121 (129)
36 cd04671 Nudix_Hydrolase_13 Mem 99.4 1.5E-12 3.3E-17 105.8 10.3 95 158-267 12-113 (123)
37 cd04688 Nudix_Hydrolase_29 Mem 99.4 1.4E-12 3.1E-17 105.3 10.1 96 159-264 13-118 (126)
38 cd03672 Dcp2p mRNA decapping e 99.4 9.9E-13 2.1E-17 110.1 9.4 95 158-267 14-114 (145)
39 cd03674 Nudix_Hydrolase_1 Memb 99.4 3.1E-12 6.8E-17 105.5 12.1 115 158-277 15-137 (138)
40 cd04677 Nudix_Hydrolase_18 Mem 99.4 2.7E-12 5.8E-17 104.0 11.2 99 159-267 20-125 (132)
41 cd04676 Nudix_Hydrolase_17 Mem 99.4 5.3E-12 1.2E-16 100.9 12.1 101 158-265 14-118 (129)
42 cd04672 Nudix_Hydrolase_14 Mem 99.4 3.5E-12 7.7E-17 102.8 10.6 98 159-265 14-113 (123)
43 PF00293 NUDIX: NUDIX domain; 99.4 2E-12 4.4E-17 103.8 8.6 104 159-271 15-126 (134)
44 cd03429 NADH_pyrophosphatase N 99.4 2.2E-12 4.7E-17 105.8 8.2 93 158-264 12-107 (131)
45 cd04667 Nudix_Hydrolase_10 Mem 99.4 5.8E-12 1.2E-16 99.9 10.1 94 158-271 11-108 (112)
46 cd04682 Nudix_Hydrolase_23 Mem 99.3 4.4E-12 9.5E-17 102.1 9.1 95 158-264 12-114 (122)
47 cd04511 Nudix_Hydrolase_4 Memb 99.3 9.8E-12 2.1E-16 101.3 10.9 91 158-262 24-117 (130)
48 cd04699 Nudix_Hydrolase_39 Mem 99.3 5E-12 1.1E-16 101.5 8.4 101 158-268 13-118 (129)
49 cd04693 Nudix_Hydrolase_34 Mem 99.3 4.7E-12 1E-16 102.5 7.3 98 158-267 12-116 (127)
50 cd04686 Nudix_Hydrolase_27 Mem 99.3 1.4E-11 2.9E-16 100.9 9.7 101 158-264 11-119 (131)
51 cd04694 Nudix_Hydrolase_35 Mem 99.3 1.6E-11 3.4E-16 102.8 9.3 111 157-267 12-134 (143)
52 cd04697 Nudix_Hydrolase_38 Mem 99.3 2E-11 4.3E-16 99.1 9.3 96 159-267 13-115 (126)
53 PRK05379 bifunctional nicotina 99.3 3.5E-11 7.5E-16 114.1 11.9 117 158-278 214-339 (340)
54 cd04690 Nudix_Hydrolase_31 Mem 99.3 3.3E-11 7.1E-16 95.8 9.8 96 159-264 13-110 (118)
55 cd03426 CoAse Coenzyme A pyrop 99.3 1.5E-11 3.3E-16 103.9 8.3 97 157-265 15-119 (157)
56 cd03424 ADPRase_NUDT5 ADP-ribo 99.3 1.7E-11 3.6E-16 100.3 8.2 97 158-267 14-118 (137)
57 COG1051 ADP-ribose pyrophospha 99.2 3.8E-11 8.1E-16 100.7 9.4 97 159-265 22-123 (145)
58 PRK00241 nudC NADH pyrophospha 99.2 7.4E-11 1.6E-15 107.8 10.8 94 158-266 143-240 (256)
59 cd02883 Nudix_Hydrolase Nudix 99.2 1E-10 2.2E-15 91.5 9.6 99 159-267 13-115 (123)
60 cd04692 Nudix_Hydrolase_33 Mem 99.2 3.5E-11 7.6E-16 99.9 7.3 105 158-267 17-130 (144)
61 PRK08999 hypothetical protein; 99.2 1.5E-10 3.4E-15 107.7 12.4 105 158-274 17-125 (312)
62 cd02885 IPP_Isomerase Isopente 99.2 6.8E-11 1.5E-15 100.7 8.9 101 159-267 43-151 (165)
63 PRK15393 NUDIX hydrolase YfcD; 99.2 1.3E-10 2.9E-15 100.5 10.0 107 159-278 50-166 (180)
64 cd04685 Nudix_Hydrolase_26 Mem 99.1 2E-10 4.3E-15 94.8 8.9 96 159-264 13-123 (133)
65 cd04662 Nudix_Hydrolase_5 Memb 99.1 6E-10 1.3E-14 91.5 11.3 95 158-257 15-125 (126)
66 TIGR02150 IPP_isom_1 isopenten 99.1 4.5E-10 9.7E-15 95.1 8.3 99 159-266 40-144 (158)
67 PRK03759 isopentenyl-diphospha 99.0 8.4E-10 1.8E-14 95.7 9.1 102 159-267 47-155 (184)
68 cd04674 Nudix_Hydrolase_16 Mem 99.0 3.5E-09 7.6E-14 86.0 11.3 89 160-260 17-111 (118)
69 PRK11762 nudE adenosine nucleo 99.0 1.6E-09 3.5E-14 94.1 9.2 97 159-267 60-162 (185)
70 cd04665 Nudix_Hydrolase_8 Memb 99.0 5.6E-09 1.2E-13 84.7 10.2 90 158-262 11-103 (118)
71 TIGR02705 nudix_YtkD nucleosid 98.9 7.3E-09 1.6E-13 88.1 10.4 91 159-264 36-127 (156)
72 cd04663 Nudix_Hydrolase_6 Memb 98.9 1.2E-08 2.7E-13 83.7 10.1 42 158-202 14-55 (126)
73 cd03676 Nudix_hydrolase_3 Memb 98.9 4.1E-09 8.8E-14 90.9 7.0 106 158-267 48-161 (180)
74 cd03670 ADPRase_NUDT9 ADP-ribo 98.9 1.9E-08 4.2E-13 87.8 11.0 115 158-277 49-183 (186)
75 cd03431 DNA_Glycosylase_C DNA 98.9 3.8E-08 8.2E-13 77.5 11.1 91 158-265 14-106 (118)
76 TIGR00052 nudix-type nucleosid 98.8 1.3E-08 2.8E-13 88.7 7.6 98 157-266 56-167 (185)
77 PRK10707 putative NUDIX hydrol 98.7 8.9E-08 1.9E-12 83.9 9.8 93 159-264 45-146 (190)
78 PRK10729 nudF ADP-ribose pyrop 98.6 1.9E-07 4E-12 82.6 10.0 84 171-266 82-173 (202)
79 COG0494 MutT NTP pyrophosphohy 98.6 3.9E-07 8.6E-12 72.3 9.1 45 158-203 24-69 (161)
80 PLN02709 nudix hydrolase 98.5 7.1E-07 1.5E-11 79.9 8.9 93 158-263 51-154 (222)
81 KOG2839|consensus 98.4 5.2E-07 1.1E-11 75.0 5.8 98 159-267 25-128 (145)
82 PRK15009 GDP-mannose pyrophosp 98.3 2.5E-06 5.5E-11 74.8 8.1 84 170-266 78-168 (191)
83 PLN02552 isopentenyl-diphospha 98.3 4.1E-06 9E-11 76.3 9.3 116 158-277 68-224 (247)
84 PF14815 NUDIX_4: NUDIX domain 98.2 1.2E-05 2.7E-10 63.8 9.6 97 157-267 8-106 (114)
85 COG2816 NPY1 NTP pyrophosphohy 98.1 2.2E-06 4.8E-11 78.8 4.3 92 160-266 157-252 (279)
86 PLN02791 Nudix hydrolase homol 98.0 1.8E-05 3.8E-10 82.2 9.4 104 158-265 45-159 (770)
87 KOG3084|consensus 98.0 5.4E-07 1.2E-11 83.5 -1.6 96 158-266 200-300 (345)
88 PLN03143 nudix hydrolase; Prov 98.0 2.4E-05 5.1E-10 72.9 8.4 45 159-203 144-191 (291)
89 KOG0648|consensus 96.8 0.0012 2.7E-08 61.3 4.3 97 158-264 127-231 (295)
90 COG4119 Predicted NTP pyrophos 96.5 0.004 8.7E-08 51.1 4.6 45 159-203 19-68 (161)
91 KOG4195|consensus 96.4 0.0035 7.5E-08 55.9 3.8 97 160-261 141-253 (275)
92 COG1443 Idi Isopentenyldiphosp 96.3 0.0072 1.6E-07 52.2 5.2 118 146-267 27-156 (185)
93 KOG3069|consensus 96.2 0.009 2E-07 53.8 5.3 97 160-264 60-163 (246)
94 KOG3041|consensus 96.2 0.01 2.3E-07 52.1 5.6 54 157-212 87-142 (225)
95 PLN02839 nudix hydrolase 95.5 0.026 5.7E-07 54.2 5.8 99 175-278 239-347 (372)
96 PRK10880 adenine DNA glycosyla 94.0 0.2 4.2E-06 48.1 7.5 94 156-268 240-335 (350)
97 KOG2937|consensus 92.0 0.046 9.9E-07 51.5 0.1 102 139-263 84-191 (348)
98 PF13869 NUDIX_2: Nucleotide h 90.5 1.7 3.7E-05 38.1 8.4 56 158-216 58-116 (188)
99 KOG0142|consensus 85.8 0.64 1.4E-05 41.2 2.7 79 183-267 102-186 (225)
100 PRK13910 DNA glycosylase MutY; 80.4 5.6 0.00012 37.2 6.8 32 232-268 241-272 (289)
101 KOG1689|consensus 71.2 6.2 0.00013 34.2 4.1 38 160-200 86-123 (221)
102 PF13358 DDE_3: DDE superfamil 62.7 11 0.00023 29.7 3.7 40 49-89 106-145 (146)
103 COG1194 MutY A/G-specific DNA 52.0 29 0.00062 33.3 5.2 16 252-267 315-330 (342)
104 TIGR01084 mutY A/G-specific ad 50.9 19 0.00041 33.4 3.8 23 157-179 238-262 (275)
105 PF14443 DBC1: DBC1 47.4 72 0.0016 26.3 6.2 34 170-203 23-59 (126)
106 COG4112 Predicted phosphoester 43.3 49 0.0011 28.7 4.7 102 159-274 73-198 (203)
107 KOG4432|consensus 34.6 56 0.0012 31.0 4.1 42 173-218 81-122 (405)
108 PF03900 Porphobil_deamC: Porp 25.5 1.8E+02 0.0039 21.0 4.8 26 186-217 2-27 (74)
109 KOG2457|consensus 20.5 68 0.0015 31.6 2.0 44 157-200 386-434 (555)
110 PF07026 DUF1317: Protein of u 20.4 98 0.0021 22.1 2.3 23 172-197 23-45 (60)
No 1
>KOG4548|consensus
Probab=100.00 E-value=2.3e-54 Score=382.35 Aligned_cols=240 Identities=33% Similarity=0.518 Sum_probs=209.8
Q ss_pred CCCCCCceEEEEEEeeeCCcccCCCCHHHHHHHHHHHHHHHhhccCChHHHhHHHHHHHHHHhhccCCCCccchhHHhhh
Q psy169 39 SGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKSLNVDMIDDALQQT 118 (280)
Q Consensus 39 ~~~~~~w~i~~av~L~R~Pvit~~~~~~E~~~~~~~~~~e~e~sl~s~~e~~~~~e~~~~~~~~~g~~~~~~~~~~~~~~ 118 (280)
.+++.+|+|++||+|+|+|||+++||++|++||.|+.++|.|+++++|||++...+..++.......-.++.+++....+
T Consensus 20 tass~p~~~~~gvll~R~Pvv~~~~se~EK~~~~ll~e~e~e~sl~~dhel~~~qe~~~~~~q~~~~~e~~~eDe~~~i~ 99 (263)
T KOG4548|consen 20 TASSQPWKIFAGVLLSRLPVVAPPLSELEKRFYSLLMELEQEKSLKPDHELKAFQEEKEKAWQAQLRKEVDEEDEFIGIT 99 (263)
T ss_pred ccCCCchhhhHHhhhhhcccccCCCCHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 34458999999999999999999999999999999999999999999999998877332222211111112233444668
Q ss_pred ccchhhhhhhcccCCCCCCCCccchhcCCccchhhcCCCcEEEEEEecCCCCCceecCCeec-CCCCCHHHHHHHHHHHH
Q psy169 119 GQDFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKR-QEGETMRQTAERILAEK 197 (280)
Q Consensus 119 ~~d~ed~~~~~~~~f~p~~R~T~aD~~nd~~SL~R~l~~~LyLLVk~~~g~~~~W~FP~G~v-e~gEtl~qaAeRel~Ee 197 (280)
++|.+|+|.+++.+|.-..|+||||.+||++||+|+||++|||||+++.|..++|.||++.+ ..|++||.+|+|.|+..
T Consensus 100 ~~~~kd~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~ 179 (263)
T KOG4548|consen 100 ANDRKDMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVL 179 (263)
T ss_pred HHHHHHHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHH
Confidence 89999999999888876669999999999999999999999999998888889999999999 99999999999999999
Q ss_pred hCCceEEEEecccceEEEEeeCCccccccccccceEEEEEEEEEeCCCC--CCCccceEeeccccccccccHHHHHHHHh
Q psy169 198 FNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV--KDKKLEYTWAAREELPKLLLEDYNKNISL 275 (280)
Q Consensus 198 ~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffka~~~~G~~--~~e~~d~~WltkeEl~~~l~~~y~~~v~~ 275 (280)
+|.++.+||+||+|+||+.+++|...+...+ +|.++|||+|.+.+|+. +....||.|||++||.+|+++.|+.+|++
T Consensus 180 ~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~-~~sk~ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~l~~~~~~~vK~ 258 (263)
T KOG4548|consen 180 SGENKSTWFVGNAPFGHTPLQSPREMTTEEP-VSSKVFFFKASLVANSNQKNQNKEDFVWVTKDELGEKLPKFAKAQVKH 258 (263)
T ss_pred hcchhhhheeccCccccccccCccccccccc-ccceeEEeeeeeccccchhcccccceEEechHHHhhhcchHHHHhhhh
Confidence 9999999999999999999999988766654 68999999999999987 35678999999999999999999999999
Q ss_pred hhhc
Q psy169 276 FLMD 279 (280)
Q Consensus 276 ~L~d 279 (280)
+|+|
T Consensus 259 ilsD 262 (263)
T KOG4548|consen 259 ILSD 262 (263)
T ss_pred hccC
Confidence 9987
No 2
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=100.00 E-value=1e-32 Score=226.94 Aligned_cols=130 Identities=52% Similarity=1.002 Sum_probs=116.8
Q ss_pred CCccchhhcCCCcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccc
Q psy169 146 NNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQA 225 (280)
Q Consensus 146 nd~~SL~R~l~~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~ 225 (280)
||+|||+|+|++++|||||++.+..|.|.||+|+++.|||+++||.|||.||+|+.+++++++++|++++.|.||.....
T Consensus 1 ~~~~~~~r~~~~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~ 80 (132)
T cd04661 1 NDRKSLDRKLDDTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRN 80 (132)
T ss_pred CCccchhhcccCcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCccccc
Confidence 79999999999999999999866568999999999999999999999999999999999999999999999988864322
Q ss_pred cccccceEEEEEEEEEeCCCCC--CCccceEeeccccccccccHHHHHHHHhh
Q psy169 226 ESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYNKNISLF 276 (280)
Q Consensus 226 ~~~~~g~kvfffka~~~~G~~~--~e~~d~~WltkeEl~~~l~~~y~~~v~~~ 276 (280)
.. ..|.++|||+|++.+|.+. .++.+++|++++||.+++++.||.+|++|
T Consensus 81 ~~-~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~~~~~~~~~~~ 132 (132)
T cd04661 81 EG-IVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYLNPPYLQSVKKF 132 (132)
T ss_pred cc-CcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhcCHHHHHHHhcC
Confidence 11 1568999999999999874 57899999999999999999999999987
No 3
>PF11788 MRP-L46: 39S mitochondrial ribosomal protein L46 ; InterPro: IPR021757 This is the L46 subunit of the mammalian mitochondrial ribosome, conserved from plants and fungi.
Probab=99.82 E-value=1.1e-20 Score=151.82 Aligned_cols=98 Identities=37% Similarity=0.469 Sum_probs=75.7
Q ss_pred ceEEEEEEeeeCCcccCCCCHHHHHHHHHH----HHHHHhhccCChHHHhHHHHHHHHHHhhccCCCCccc---hhHHhh
Q psy169 45 WDLMSAVCLERKPLITRDFNEIEKKVQLLM----NELELENSMKSDHELRCIADQIRAEKMKDKSLNVDMI---DDALQQ 117 (280)
Q Consensus 45 w~i~~av~L~R~Pvit~~~~~~E~~~~~~~----~~~e~e~sl~s~~e~~~~~e~~~~~~~~~g~~~~~~~---~~~~~~ 117 (280)
|+|+|||||+|+|||||+|||||++||+|| ++++.+.|++++|+.+...+.+..+. +.+..+..+. +.....
T Consensus 1 w~I~aav~L~R~Pvit~~~t~~E~~y~~yq~~L~~rl~~~~s~~~~fe~~~~~e~~~~~~-~~~~~~~~~~~~~~~g~~~ 79 (111)
T PF11788_consen 1 WKIFAAVCLSRPPVITPEPTPFEKAYYEYQKELLRRLEWEFSLYFYFELGTLAEKRFKAK-QKKLIDKDEDVAFDKGKPD 79 (111)
T ss_pred CceeEEEEEecCCccCCCCCHHHHHHHHHHHHHHHHHhccccHHHHHHhhchHHHHHHHH-hcccccccccccccccccc
Confidence 999999999999999999999999997776 56668999999999999888754332 2222221110 111234
Q ss_pred hccchhhhhhhcccCC------CCCCCCccch
Q psy169 118 TGQDFVDMGLNELKKF------TPASRITKAD 143 (280)
Q Consensus 118 ~~~d~ed~~~~~~~~f------~p~~R~T~aD 143 (280)
+++|.++.++++...| +|+||+|+||
T Consensus 80 ~~~~~e~~~e~~~~~~~~~~~~~p~~R~TeaD 111 (111)
T PF11788_consen 80 TAQDREDRWEQELEQFKESVEIKPAPRITEAD 111 (111)
T ss_pred ccccHHHHHHHHhhccccccccCCCCCCCCCC
Confidence 6788899998888787 9999999998
No 4
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.60 E-value=6.2e-15 Score=125.57 Aligned_cols=117 Identities=17% Similarity=0.282 Sum_probs=79.6
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..|||+||+.. ..|.|.||||+++.|||+.+||.||++||+|+++.+. ...+++.+.+.|..............+++
T Consensus 29 g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 106 (159)
T PRK15434 29 GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPIT--AGQFYGVWQHFYDDNFSGTDFTTHYVVLG 106 (159)
T ss_pred CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccc--cceEEEEEEeecccccCCCccceEEEEEE
Confidence 46999998732 2579999999999999999999999999999987531 11233443333321100000002356888
Q ss_pred EEEEEeCCCCC---CCccceEeeccccccccccHHHHHHHHhhhh
Q psy169 237 FKAQYLEGDVK---DKKLEYTWAAREELPKLLLEDYNKNISLFLM 278 (280)
Q Consensus 237 fka~~~~G~~~---~e~~d~~WltkeEl~~~l~~~y~~~v~~~L~ 278 (280)
|.|.+..|.+. .++.+++|++.+|+.++.. |....++||.
T Consensus 107 f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~~--~~~~~~~~~~ 149 (159)
T PRK15434 107 FRLRVAEEDLLLPDEQHDDYRWLTPDALLASDN--VHANSRAYFL 149 (159)
T ss_pred EEEEecCCcccCChHHeeEEEEEeHHHhhhccc--cCHHHHHHhc
Confidence 99999888764 3689999999999998633 3333344443
No 5
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.56 E-value=3.4e-14 Score=115.89 Aligned_cols=112 Identities=23% Similarity=0.275 Sum_probs=83.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
.-+||+++.....+.|.||+|+++.|||+.+||.||+.||+|.++... ..++.+.+..+.. . .....++|
T Consensus 11 ~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~---~---~~~~~~~f 80 (134)
T cd03675 11 GRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPT----ALLGIYQWTAPDS---D---TTYLRFAF 80 (134)
T ss_pred CEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccc----eEEEEEEeecCCC---C---eeEEEEEE
Confidence 358899987555678999999999999999999999999999987642 2344555544331 1 12345667
Q ss_pred EEEEeCCCC----CCCccceEeeccccccccc----cHHHHHHHHhhhhc
Q psy169 238 KAQYLEGDV----KDKKLEYTWAAREELPKLL----LEDYNKNISLFLMD 279 (280)
Q Consensus 238 ka~~~~G~~----~~e~~d~~WltkeEl~~~l----~~~y~~~v~~~L~d 279 (280)
.|.+..+.. ..++.++.|++.+|+.+.. ++...+.|..+|.+
T Consensus 81 ~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~~ 130 (134)
T cd03675 81 AAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLAG 130 (134)
T ss_pred EEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHhc
Confidence 788776543 2357899999999999986 45688888888875
No 6
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.55 E-value=3.3e-14 Score=114.58 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=78.1
Q ss_pred CCcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 156 ~~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
++..+||+++..+ +.|.||+|+++.|||+.+||.||+.||+|+.+... ..++...|.++... . .....++
T Consensus 14 ~~~~vLl~~~~~~--~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~--~--~~~~~~~ 83 (131)
T cd03673 14 GGIEVLLIHRPRG--DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG----DPLGTIRYWFSSSG--K--RVHKTVH 83 (131)
T ss_pred CCeEEEEEEcCCC--CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec----ceEEEEEEeccCCC--C--CcceEEE
Confidence 4567999998743 78999999999999999999999999999987632 24455555444321 0 1346789
Q ss_pred EEEEEEeCCCCC----CCccceEeeccccccccccH
Q psy169 236 FFKAQYLEGDVK----DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 236 ffka~~~~G~~~----~e~~d~~WltkeEl~~~l~~ 267 (280)
||.+....+... .++.++.|++.+|+.+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 119 (131)
T cd03673 84 WWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSY 119 (131)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCC
Confidence 999998877653 35689999999999988664
No 7
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=5.1e-14 Score=113.72 Aligned_cols=91 Identities=21% Similarity=0.332 Sum_probs=70.0
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
..+||+++..++.+.|.||+|+++.|||+.+||.||++||+|.++++. ..++.+.+ + +...+||
T Consensus 12 ~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~----~~~~~~~~--~----------~~~~~~f 75 (121)
T cd04669 12 GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVE----EIFLIVNQ--N----------GRTEHYF 75 (121)
T ss_pred CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeee----eEEEEEee--C----------CcEEEEE
Confidence 468999987544678999999999999999999999999999988642 22333332 1 2347889
Q ss_pred EEEEeCCCCCC------------CccceEeecccccccc
Q psy169 238 KAQYLEGDVKD------------KKLEYTWAAREELPKL 264 (280)
Q Consensus 238 ka~~~~G~~~~------------e~~d~~WltkeEl~~~ 264 (280)
.|+...|.+.. ...++.|++.++|+++
T Consensus 76 ~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 76 LARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred EEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 99999887521 1246899999999986
No 8
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=5.7e-14 Score=111.81 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=79.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++..+ +.|.||+|+++.|||+.+||.||+.||+|+.+. . ...++.+.+.+.. ....+++
T Consensus 12 ~~vLL~~r~~~--~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~----~~~~~~~~~~~~~--------~~~~~~~ 77 (120)
T cd04680 12 GRVLLVRHTYG--PGWYLPGGGLERGETFAEAARRELLEELGIRLAVV----AELLGVYYHSASG--------SWDHVIV 77 (120)
T ss_pred CeEEEEEECCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccc----cceEEEEecCCCC--------CceEEEE
Confidence 35888888743 489999999999999999999999999999876 2 2344555543321 1246888
Q ss_pred EEEEEeCCCC---CCCccceEeeccccccccccHHHHHHHHh
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKLLLEDYNKNISL 275 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~l~~~y~~~v~~ 275 (280)
|.|....+.. ..+..++.|++.++|++.+.+...+.+..
T Consensus 78 f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~~~~~~~~ 119 (120)
T cd04680 78 FRARADTQPVIRPSHEISEARFFPPDALPEPTTPATRRRIAE 119 (120)
T ss_pred EEecccCCCccCCcccEEEEEEECHHHCcccCChHHHHHhhc
Confidence 9998887652 24678999999999999988877666543
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=8e-14 Score=112.48 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=76.6
Q ss_pred cEEEEEEecC-CCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKL-GDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~-g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++.. ...+.|.||+|+++.|||+.+||.||+.||+|+++... .+++...+.+... . .....++
T Consensus 14 ~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~---~---~~~~~~~ 83 (125)
T cd04679 14 GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST----RLLCVVDHIIEEP---P---QHWVAPV 83 (125)
T ss_pred CEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc----eEEEEEeecccCC---C---CeEEEEE
Confidence 3589998863 23578999999999999999999999999999987632 2344444322211 1 2346778
Q ss_pred EEEEEeCCCCC----CCccceEeeccccccccccHHHHHH
Q psy169 237 FKAQYLEGDVK----DKKLEYTWAAREELPKLLLEDYNKN 272 (280)
Q Consensus 237 fka~~~~G~~~----~e~~d~~WltkeEl~~~l~~~y~~~ 272 (280)
|.+....|.+. .++.+++|++.+++.+.+.+.-...
T Consensus 84 f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~~~~~~ 123 (125)
T cd04679 84 YLAENFSGEPRLMEPDKLLELGWFALDALPQPLTRATRDA 123 (125)
T ss_pred EEEeecCCccccCCCccccEEEEeCHHHCCchhHHHHHHH
Confidence 88888877642 4678999999999998777655443
No 10
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.53 E-value=9.7e-14 Score=113.17 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=79.0
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..|||+||..++ .|.|.||+|+++.|||+.+||.||+.||+|+++.+. ..++.+.+.++. ....++
T Consensus 15 ~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~----~~~~~~~~~~~~--------~~~~~~ 82 (135)
T PRK10546 15 GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG----EYVASHQREVSG--------RRIHLH 82 (135)
T ss_pred CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc----eeEEEEEEecCC--------cEEEEE
Confidence 358999986432 578999999999999999999999999999987632 224445554432 124577
Q ss_pred EEEEEEeCCCCC-CCccceEeecccccccc-ccHHHHHHHHhhh
Q psy169 236 FFKAQYLEGDVK-DKKLEYTWAAREELPKL-LLEDYNKNISLFL 277 (280)
Q Consensus 236 ffka~~~~G~~~-~e~~d~~WltkeEl~~~-l~~~y~~~v~~~L 277 (280)
+|.+....|.+. .+..+++|++.+++.++ +.+...+-++.++
T Consensus 83 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 126 (135)
T PRK10546 83 AWHVPDFHGELQAHEHQALVWCTPEEALRYPLAPADIPLLEAFM 126 (135)
T ss_pred EEEEEEecCcccccccceeEEcCHHHcccCCCCcCcHHHHHHHH
Confidence 788877777653 35789999999999987 4555555555444
No 11
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.51 E-value=1.8e-13 Score=114.15 Aligned_cols=113 Identities=21% Similarity=0.406 Sum_probs=79.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccc---cccceE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAES---NVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~---~~~g~k 233 (280)
.-+||++|.... +.|.||+|+++.||++.+||.||+.||+|+++. ..+++..+ +.+.|.++....... ...+..
T Consensus 15 ~~vLL~~r~~~~-~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~-~~~~y~~~~~~~~~~~~~~~~~~~ 92 (147)
T cd03671 15 GKVFVGRRIDTP-GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIP-DWLRYDLPPELKLKIWGGRYRGQE 92 (147)
T ss_pred CEEEEEEEcCCC-CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcC-CeeEeeChhhhhccccCCcCCCEE
Confidence 469999987543 799999999999999999999999999999864 34445433 345565553321110 012456
Q ss_pred EEEEEEEEeC--CCC--C----CCccceEeeccccccccccHHHHHHH
Q psy169 234 LFFFKAQYLE--GDV--K----DKKLEYTWAAREELPKLLLEDYNKNI 273 (280)
Q Consensus 234 vfffka~~~~--G~~--~----~e~~d~~WltkeEl~~~l~~~y~~~v 273 (280)
+++|.+.+.. +.+ . .++.++.|++.+|+.+++.+ |...|
T Consensus 93 ~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~-~~~~~ 139 (147)
T cd03671 93 QKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVP-FKRPV 139 (147)
T ss_pred EEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchh-hhHHH
Confidence 7778787764 333 1 36799999999999999866 43333
No 12
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.51 E-value=1.9e-13 Score=112.92 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=69.6
Q ss_pred cEEEEEEecCCC---CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecc-cceE-EEEeeCCccccccccccce
Q psy169 158 HLVLLIKEKLGD---KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGN-APCG-FYKFKYPKSLQAESNVVGA 232 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~-~P~g-~~~~~yp~~~~~~~~~~g~ 232 (280)
..+||+||.... .|.|.||+|+++.|||+.+||.||+.||+|+.+.+..+.. ...+ ...+.|+...... ..
T Consensus 15 ~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 90 (141)
T PRK15472 15 GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEE----IY 90 (141)
T ss_pred CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCcee----EE
Confidence 468999986432 4889999999999999999999999999999875422210 0000 0011233221100 11
Q ss_pred EE-EEEEEEEeCCCC--CCCccceEeecccccccc-ccHHH
Q psy169 233 KL-FFFKAQYLEGDV--KDKKLEYTWAAREELPKL-LLEDY 269 (280)
Q Consensus 233 kv-fffka~~~~G~~--~~e~~d~~WltkeEl~~~-l~~~y 269 (280)
.+ ++|.|....+.+ ..++.+++|++.+||.++ +.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~ 131 (141)
T PRK15472 91 MIYLIFDCVSANRDVKINEEFQDYAWVKPEDLVHYDLNVAT 131 (141)
T ss_pred EEEEEEEeecCCCcccCChhhheEEEccHHHhccccccHHH
Confidence 22 346666666654 356799999999999997 44433
No 13
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.49 E-value=1.1e-13 Score=111.98 Aligned_cols=102 Identities=24% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 156 ~~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
++.+|||+|++. +.|.||+|+++.|||+.+||.||+.||+|+.+...- ..+.....+.++.. . .+..++
T Consensus 15 ~~~~vLl~~~~~---~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~---~---~~~~~~ 83 (130)
T cd03428 15 NEIEYLLLQASY---GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF--IVLGFKETLNYQVR---G---KLKTVT 83 (130)
T ss_pred CCceEEEEEccC---CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh--hhccceeEEEcccc---C---cceEEE
Confidence 556899999874 789999999999999999999999999999876421 11111122222210 0 246788
Q ss_pred EEEEEEeCC-CC--CCCccceEeeccccccccccHH
Q psy169 236 FFKAQYLEG-DV--KDKKLEYTWAAREELPKLLLED 268 (280)
Q Consensus 236 ffka~~~~G-~~--~~e~~d~~WltkeEl~~~l~~~ 268 (280)
||.+++..+ .+ ..+..++.|++.+|+.+++.+.
T Consensus 84 ~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~ 119 (130)
T cd03428 84 YFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYE 119 (130)
T ss_pred EEEEEeCCCCccccccceeeEEeecHHHHHHHcCch
Confidence 899988743 33 2468999999999999988543
No 14
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=2.2e-13 Score=110.42 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=71.8
Q ss_pred CcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 157 KHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 157 ~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
+..+|++++..+..+.|.||||+++.|||+.+||.||+.||+|..+... ...+++.|.++..........+...+|
T Consensus 11 ~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ 86 (128)
T cd04687 11 NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIG----PLLFVREYIGHNPTSELPGHFHQVELM 86 (128)
T ss_pred CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccC----cEEEEEEEeccCccccCCCceeEEEEE
Confidence 3468999886444578999999999999999999999999999987631 112223332111000000013456789
Q ss_pred EEEEEeCCCC-------CCCccceEeecccccccc
Q psy169 237 FKAQYLEGDV-------KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 237 fka~~~~G~~-------~~e~~d~~WltkeEl~~~ 264 (280)
|.|+...+.. +.+..+++|++.++|.++
T Consensus 87 f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 87 FECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred EEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 9999987753 123469999999999876
No 15
>PLN02325 nudix hydrolase
Probab=99.48 E-value=3.3e-13 Score=112.74 Aligned_cols=112 Identities=18% Similarity=0.225 Sum_probs=78.0
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||++|..+ ..|.|.||||+++.|||+.+||.||++||+|+++.+. ..++++.+.+.... .. .....+|
T Consensus 20 ~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~----~~l~~~~~~~~~~~--~~--~~~i~~~ 91 (144)
T PLN02325 20 NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI----ELLTVTNNVFLEEP--KP--SHYVTVF 91 (144)
T ss_pred CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce----EEEEEecceeecCC--CC--cEEEEEE
Confidence 35888888742 2578999999999999999999999999999987632 23344333221110 00 2456778
Q ss_pred EEEEEeCCCC---C---CCccceEeeccccccccccHHHHHHHHhhh
Q psy169 237 FKAQYLEGDV---K---DKKLEYTWAAREELPKLLLEDYNKNISLFL 277 (280)
Q Consensus 237 fka~~~~G~~---~---~e~~d~~WltkeEl~~~l~~~y~~~v~~~L 277 (280)
|.|...++.. . +++.+++|++.++|++.+......-+..++
T Consensus 92 f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~~~~~~ 138 (144)
T PLN02325 92 MRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWPLEKLVGSGF 138 (144)
T ss_pred EEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHHHHHHHHcCC
Confidence 8898876542 1 235889999999999877666555555444
No 16
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.48 E-value=1.6e-13 Score=114.29 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=75.9
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE---EEEecccceEEE------EeeCCccccccccc
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH---ARFYGNAPCGFY------KFKYPKSLQAESNV 229 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~---v~~vg~~P~g~~------~~~yp~~~~~~~~~ 229 (280)
.+||++|..+ .+.|.||+|+++.|||+.+||.|||.||||+++. +.+++......| .+.|+.. .
T Consensus 20 ~vLl~~r~~~-~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 92 (148)
T PRK09438 20 GVLMLQRADD-PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPG------V 92 (148)
T ss_pred eEEEEEecCC-CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccc------c
Confidence 4888888632 4789999999999999999999999999999872 122211110011 1111111 0
Q ss_pred cceEEEEEEEEEeCCC-C-CCCccceEeecccccccc-ccHHHHHHHHhhh
Q psy169 230 VGAKLFFFKAQYLEGD-V-KDKKLEYTWAAREELPKL-LLEDYNKNISLFL 277 (280)
Q Consensus 230 ~g~kvfffka~~~~G~-~-~~e~~d~~WltkeEl~~~-l~~~y~~~v~~~L 277 (280)
.....++|.|....+. + ..++.++.|++.+|+.++ +.+.....|..++
T Consensus 93 ~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 143 (148)
T PRK09438 93 TRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLV 143 (148)
T ss_pred CCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHhcChhHHHHHHHHH
Confidence 2356788888876543 2 247899999999999997 4556666666554
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=3.6e-13 Score=109.10 Aligned_cols=110 Identities=15% Similarity=0.236 Sum_probs=74.7
Q ss_pred EEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEE-EEecccceEEEEeeCCccccccccccceEEEE
Q psy169 159 LVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHA-RFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 159 LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v-~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
-+||++|..+ ..|.|.||+|+++.|||+.+||.||+.||+|+++.. .+++ .+.+.|+... .......+|
T Consensus 14 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~ 84 (130)
T cd04681 14 ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLF-----SLPNTYPYGG----MEYDTLDLF 84 (130)
T ss_pred cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEE-----eecceeeeCC----ceeEEEEEE
Confidence 4778887532 357899999999999999999999999999998762 2222 2221121110 001233457
Q ss_pred EEEEEeCCCCC---CCccceEeecccccc--ccccHHHHHHHHhhh
Q psy169 237 FKAQYLEGDVK---DKKLEYTWAAREELP--KLLLEDYNKNISLFL 277 (280)
Q Consensus 237 fka~~~~G~~~---~e~~d~~WltkeEl~--~~l~~~y~~~v~~~L 277 (280)
|.+++..+... .++.++.|++.++|. .+..+.....|+.+|
T Consensus 85 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~~ 130 (130)
T cd04681 85 FVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERWL 130 (130)
T ss_pred EEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhhC
Confidence 88887655432 467899999999995 345466777777654
No 18
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=2.5e-13 Score=108.59 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=71.1
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..+||+||.... .|.|.||+|+++.|||+.+||.||+.||+|+.+...-+ ..++.+.+.++.. .....+
T Consensus 11 ~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~--~~~~~~~~~~~~~-------~~~~~~ 81 (120)
T cd04683 11 DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL--RLAHTMHRRTEDI-------ESRIGL 81 (120)
T ss_pred CEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEEecCCCC-------ceEEEE
Confidence 468999886432 57899999999999999999999999999998752100 1223333322211 134567
Q ss_pred EEEEEEeCCCCC----CCccceEeecccccccccc
Q psy169 236 FFKAQYLEGDVK----DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 236 ffka~~~~G~~~----~e~~d~~WltkeEl~~~l~ 266 (280)
||.+....|.+. .++.++.|++.++|..-+.
T Consensus 82 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~ 116 (120)
T cd04683 82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTV 116 (120)
T ss_pred EEEEEeecCccccCCCCcEeeEEEEchHHCcchhc
Confidence 888887776552 3578999999999987653
No 19
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.48 E-value=3e-13 Score=112.44 Aligned_cols=97 Identities=25% Similarity=0.335 Sum_probs=73.0
Q ss_pred EEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 160 yLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
+||+++..+ ..+.|.||+|++++|||+.+||.||+.||+|+++... .+++.+.+.++.. .....++|.
T Consensus 27 vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~-------~~~~~~~f~ 95 (142)
T cd04700 27 VLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV----KFLGTYLGRFDDG-------VLVLRHVWL 95 (142)
T ss_pred EEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc----EEEEEEEEEcCCC-------cEEEEEEEE
Confidence 788887643 3578999999999999999999999999999987632 3445555544432 123457888
Q ss_pred EEEeCCCC----CCCccceEeeccccccccccH
Q psy169 239 AQYLEGDV----KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 239 a~~~~G~~----~~e~~d~~WltkeEl~~~l~~ 267 (280)
|++..+.. ..++.++.|++.+|+.+.+..
T Consensus 96 ~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 128 (142)
T cd04700 96 AEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQ 128 (142)
T ss_pred EEecCCccccCCCCCEEEEEEECHHHhhhcccc
Confidence 88865542 246789999999999988754
No 20
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=5.6e-13 Score=107.98 Aligned_cols=108 Identities=22% Similarity=0.282 Sum_probs=78.0
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++..+ .++.|.||||+++.|||+.+||.||++||+|.++... ..++.+...++.. . .....+|
T Consensus 14 ~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~----~~~~~~~~~~~~~---~---~~~~~~~ 83 (129)
T cd04678 14 GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV----QFLTVTNDVFEEE---G---KHYVTIF 83 (129)
T ss_pred CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce----EEEEEEeEEeCCC---C---cEEEEEE
Confidence 35888988743 2678999999999999999999999999999987631 1223333222211 1 2356778
Q ss_pred EEEEEeCCCCC------CCccceEeeccccccccccHHHHHHHHhhh
Q psy169 237 FKAQYLEGDVK------DKKLEYTWAAREELPKLLLEDYNKNISLFL 277 (280)
Q Consensus 237 fka~~~~G~~~------~e~~d~~WltkeEl~~~l~~~y~~~v~~~L 277 (280)
|.|+...+... +++.+++|++.++|.+. +.++.-+++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~--~~~~~~~~~~~ 128 (129)
T cd04678 84 VKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV--DPLFLPLKNLF 128 (129)
T ss_pred EEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc--chhhHHHHHHh
Confidence 89988876542 24689999999999986 66666666654
No 21
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=3.6e-13 Score=107.37 Aligned_cols=101 Identities=27% Similarity=0.328 Sum_probs=72.2
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++..+ ..+.|.||+|+++.|||+.+||.||++||+|+++... ..++.+.+.++....... ....+++
T Consensus 11 ~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~ 84 (122)
T cd04673 11 GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG----RLLTVVDVIERDAAGRVE--FHYVLID 84 (122)
T ss_pred CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec----eeEEEEEEeeccCCCccc--eEEEEEE
Confidence 35888888632 2578999999999999999999999999999987632 234444443322110010 2345677
Q ss_pred EEEEEeCCCC--CCCccceEeecccccccc
Q psy169 237 FKAQYLEGDV--KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 237 fka~~~~G~~--~~e~~d~~WltkeEl~~~ 264 (280)
|.|....+.. ..++.+++|++.+||.+.
T Consensus 85 ~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 85 FLCRYLGGEPVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred EEEEeCCCcccCCcccceeEEECHHHHhhC
Confidence 8888877765 246789999999999876
No 22
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.46 E-value=4.2e-13 Score=109.64 Aligned_cols=111 Identities=31% Similarity=0.415 Sum_probs=81.1
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++..+ ..+.|.||||+++.|||+.+||.||+.||+|+++... ..++.+.+.++.. . ....+|+
T Consensus 12 ~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~---~---~~~~~~~ 81 (137)
T cd03427 12 DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNL----KLVGIIKFPFPGE---E---ERYGVFV 81 (137)
T ss_pred CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecc----eEEEEEEEEcCCC---C---cEEEEEE
Confidence 35888888743 3578999999999999999999999999999987632 2235555544331 0 2357888
Q ss_pred EEEEEeCCCCC--CCccceEeecccccccc-ccHHHHHHHHhhhh
Q psy169 237 FKAQYLEGDVK--DKKLEYTWAAREELPKL-LLEDYNKNISLFLM 278 (280)
Q Consensus 237 fka~~~~G~~~--~e~~d~~WltkeEl~~~-l~~~y~~~v~~~L~ 278 (280)
|.|....+.+. .+..+++|++.+|+.+. +.+....-+..++.
T Consensus 82 f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~~ 126 (137)
T cd03427 82 FLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWLPLMLE 126 (137)
T ss_pred EEECCcccccCCCCccccceEEcHhhcccccCCCCcHHHHHHHhC
Confidence 99988877764 35578999999999876 44455555555553
No 23
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.46 E-value=6.6e-13 Score=106.51 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=76.3
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++... ..+.|.||+|+++.|||+.+||.||+.||+|+++... ..++.+.+.++...... ......++
T Consensus 11 ~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~ 84 (128)
T cd04684 11 GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG----RRLGSASRYFYSPDGDY--DAHHLCVF 84 (128)
T ss_pred CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc----eeeeEEEEEEECCCCCe--eccEEEEE
Confidence 45899988742 2578999999999999999999999999999987642 23444443322211100 02356788
Q ss_pred EEEEEeCCCC-----CCCccceEeecccccccc-ccHHHHHH
Q psy169 237 FKAQYLEGDV-----KDKKLEYTWAAREELPKL-LLEDYNKN 272 (280)
Q Consensus 237 fka~~~~G~~-----~~e~~d~~WltkeEl~~~-l~~~y~~~ 272 (280)
|.|....+.. ..+..++.|++.+++... +.+...+.
T Consensus 85 f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~a 126 (128)
T cd04684 85 YDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWA 126 (128)
T ss_pred EEEEEecCccccCCCCCCceeeEEECHHHhhccCCCHHHHHh
Confidence 9999887663 235689999999999965 44444443
No 24
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.46 E-value=4.7e-13 Score=111.69 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=73.4
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+||... ..|.|.||||+++.|||+.+||.||++||+|+++.+.-+ ..++++.+.|+..............++
T Consensus 24 g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (144)
T cd03430 24 GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDA--ELLGVFEHFYDDNFFGDDFSTHYVVLG 101 (144)
T ss_pred CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccc--eEEEEEEEEeccccccCCCccEEEEEE
Confidence 47999998632 257899999999999999999999999999998763211 223444333221110001112456778
Q ss_pred EEEEEeCCCC---CCCccceEeecccccccc
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~ 264 (280)
|.|....|.+ ..++.+++|++.++|.+.
T Consensus 102 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 102 YVLKLSSNELLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred EEEEEcCCcccCCchhccEeEEecHHHHhcC
Confidence 8998887764 246899999999999964
No 25
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.44 E-value=9.5e-13 Score=106.18 Aligned_cols=98 Identities=17% Similarity=0.248 Sum_probs=70.1
Q ss_pred CcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 157 KHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 157 ~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
+..+||++++ +.+.|.||||+++.|||+.+||.||++||+|+.+... .+++.+.+.|+... .......||
T Consensus 11 ~~~vLlv~~~--~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~----~~~~~~~~~ 80 (125)
T cd04689 11 GNKVLLARVI--GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG----RFLGAIENQWHEKG----VRTHEINHI 80 (125)
T ss_pred CCEEEEEEec--CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc----EEEEEEeeeeccCC----ceEEEEEEE
Confidence 4468999986 3468999999999999999999999999999987632 34454444332210 002345688
Q ss_pred EEEEEeCCC----C--CCCccceEeecccccccc
Q psy169 237 FKAQYLEGD----V--KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 237 fka~~~~G~----~--~~e~~d~~WltkeEl~~~ 264 (280)
|.+....+. . ..++.+++|++.+|+..+
T Consensus 81 f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04689 81 FAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125)
T ss_pred EEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence 888876432 1 235689999999998744
No 26
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.44 E-value=1.5e-12 Score=104.44 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=75.9
Q ss_pred EEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 159 LVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 159 LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
.+||+||..+. .|.|.||+|++++||++.+||.||+.||+|+++... ..++.+.+.|+. ....++|
T Consensus 17 ~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~----~~~~~~~~~~~~--------~~~~~~~ 84 (129)
T PRK10776 17 EIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA----TLFEKLEYEFPD--------RHITLWF 84 (129)
T ss_pred EEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc----eEEEEEEeeCCC--------cEEEEEE
Confidence 58899987543 578999999999999999999999999999876421 124455666653 2356778
Q ss_pred EEEEEeCCCCC-CCccceEeecccccccc-ccHHHHHHH
Q psy169 237 FKAQYLEGDVK-DKKLEYTWAAREELPKL-LLEDYNKNI 273 (280)
Q Consensus 237 fka~~~~G~~~-~e~~d~~WltkeEl~~~-l~~~y~~~v 273 (280)
|.+....+.+. .+..++.|++.+++..+ +++...+-+
T Consensus 85 ~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~~p~~~~~~~ 123 (129)
T PRK10776 85 WLVESWEGEPWGKEGQPGRWVSQVALNADEFPPANEPII 123 (129)
T ss_pred EEEEEECCccCCccCCccEEecHHHCccCCCCcccHHHH
Confidence 88877766542 35788999999999987 433333333
No 27
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=1.1e-12 Score=106.00 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=71.2
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
..+||++++.+..+.|.||||+++.|||+.+||.||+.||+|+.+.... +++.+.+ ++.. .+...+||
T Consensus 14 ~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~----~~~~~~~-~~~~-------~~~~~~~~ 81 (127)
T cd04670 14 NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS----VVGFRHA-HPGA-------FGKSDLYF 81 (127)
T ss_pred CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE----EEEEEec-CCCC-------cCceeEEE
Confidence 4589998875335789999999999999999999999999999886432 2232222 1111 12233445
Q ss_pred EEEEeC--CCC---CCCccceEeecccccccc-ccHHHHHHHHhh
Q psy169 238 KAQYLE--GDV---KDKKLEYTWAAREELPKL-LLEDYNKNISLF 276 (280)
Q Consensus 238 ka~~~~--G~~---~~e~~d~~WltkeEl~~~-l~~~y~~~v~~~ 276 (280)
.+++.. +.+ ..++.++.|++.+||.+. +...+...+.++
T Consensus 82 ~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~ 126 (127)
T cd04670 82 ICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVNRLILDI 126 (127)
T ss_pred EEEEccCcCcCCCChhhhheeEEEcHHHHhcchhHHHHHHHHHhh
Confidence 666542 332 246789999999999765 333455555443
No 28
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.44 E-value=7.6e-13 Score=108.06 Aligned_cols=102 Identities=20% Similarity=0.149 Sum_probs=70.8
Q ss_pred CcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 157 KHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 157 ~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
+..+||++|+.+..|.|.||+|+++.|||+.+||.||++||+|+++..-..+ .... +.|..+.. ....+++
T Consensus 13 ~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~-~~~~~~~~-------~~~~~~~ 83 (131)
T cd04695 13 ETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA-DYLE-QFYEANDN-------RILMAPV 83 (131)
T ss_pred CCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc-ccee-eEeecCCc-------eEEEEEE
Confidence 3458999988533678999999999999999999999999999986521111 1111 12222110 1234566
Q ss_pred EEEEEeCCCC---CCCccceEeeccccccccccH
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~l~~ 267 (280)
|.+....+.. ..++.++.|++.+++.+.+..
T Consensus 84 f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 117 (131)
T cd04695 84 FVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPF 117 (131)
T ss_pred EEEEecCCCccccCchhcccEecCHHHHHHhcCC
Confidence 7776655432 357899999999999988665
No 29
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.44 E-value=6.6e-13 Score=107.95 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=75.1
Q ss_pred CcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 157 KHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 157 ~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
+..+||++++. .+.|.||+|+++.|||+.+||.||+.||+|+++.+. ...++.+.|.++... . .....++|
T Consensus 14 ~~~vLLv~~~~--~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~---~~~l~~~~~~~~~~~--~--~~~~~~~~ 84 (122)
T cd04666 14 EVEVLLVTSRR--TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIG---KRPLGRFEYRKRSKN--R--PPRCEVAV 84 (122)
T ss_pred ceEEEEEEecC--CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCccccc---ceEEEEEEeeecCCC--C--CceEEEEE
Confidence 45789998863 378999999999999999999999999999986532 245666776554321 0 12467888
Q ss_pred EEEEEeCCCC---CCCccceEeeccccccccccH
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~l~~ 267 (280)
|.+....... ..+..++.|++.+|+.+++..
T Consensus 85 f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~~~ 118 (122)
T cd04666 85 FPLEVTEELDEWPEMHQRKRKWFSPEEAALLVEE 118 (122)
T ss_pred EEEEEeccccCCcccCceEEEEecHHHHHHhcCC
Confidence 8888765432 124579999999999887653
No 30
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=9.9e-13 Score=105.57 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=70.8
Q ss_pred cEEEEEEecCC---CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLG---DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g---~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+||++|... ..|.|.||+|+++.|||+.+||.||+.||+|.++. ... ++.+.+ +.. ....
T Consensus 11 ~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-----l~~~~~--~~~-------~~~~ 76 (117)
T cd04691 11 DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-----LCSLYH--PTS-------ELQL 76 (117)
T ss_pred CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-----EEEEec--cCC-------CeEE
Confidence 46889988632 35789999999999999999999999999999852 221 222222 211 1356
Q ss_pred EEEEEEEEeCCCCC-CCccceEeeccccccccc
Q psy169 234 LFFFKAQYLEGDVK-DKKLEYTWAAREELPKLL 265 (280)
Q Consensus 234 vfffka~~~~G~~~-~e~~d~~WltkeEl~~~l 265 (280)
++||.+....|.+. .++.+..|++.++++...
T Consensus 77 ~~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~~ 109 (117)
T cd04691 77 LHYYVVTFWQGEIPAQEAAEVHWMTANDIVLAS 109 (117)
T ss_pred EEEEEEEEecCCCCcccccccEEcCHHHcchhh
Confidence 88899998888764 578999999999998653
No 31
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.43 E-value=1.4e-12 Score=105.37 Aligned_cols=98 Identities=20% Similarity=0.293 Sum_probs=67.9
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+||+|+... .|.|.||||+++.|||+.+||.||++||+|+++... . ..+...+.|....... ....++.|.
T Consensus 15 ~iLL~r~~~~-~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~--~--~~~~~~~~~~~~~~~~---~~~~~~~~~ 86 (125)
T cd04696 15 RILLVRTTKW-RGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI--K--FAMVQEAIFSEEFHKP---AHFVLFDFF 86 (125)
T ss_pred CEEEEEccCC-CCcEeCCceeccCCCCHHHHHHHHHHHHhCCccccc--c--eEEEEEEeccCCCCCc---cEEEEEEEE
Confidence 4788887532 578999999999999999999999999999987632 1 1223233232111111 123456677
Q ss_pred EEEeCCCC--CCCccceEeecccccccc
Q psy169 239 AQYLEGDV--KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 239 a~~~~G~~--~~e~~d~~WltkeEl~~~ 264 (280)
++...+.+ ..++.++.|++.+|+.++
T Consensus 87 ~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 87 ARTDGTEVTPNEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEecCCcccCCcccceeEEECHHHHhcC
Confidence 87665544 346799999999999886
No 32
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.43 E-value=1.2e-12 Score=110.78 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=77.0
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccc--cccccceEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQA--ESNVVGAKLF 235 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~--~~~~~g~kvf 235 (280)
.+||+|+.. ..+.|.||+|+++.||++.+||.||+.||+|..+. +.+++..+ ..+.|.||..... .....|...+
T Consensus 21 ~vLL~~r~~-~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~~~~~ 98 (156)
T PRK00714 21 QVFWGRRIG-QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETR-DWLRYDLPKRLVRRSKGVYRGQKQK 98 (156)
T ss_pred EEEEEEEcC-CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcC-CeEEecCcHHHhhccCCcccCcEEE
Confidence 488998863 24789999999999999999999999999999865 44444332 3456666653211 1112355678
Q ss_pred EEEEEEeCCCC--C------CCccceEeeccccccccccH
Q psy169 236 FFKAQYLEGDV--K------DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 236 ffka~~~~G~~--~------~e~~d~~WltkeEl~~~l~~ 267 (280)
||.++...+.. . .++.+++|++.+|+.+.+.+
T Consensus 99 ~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~ 138 (156)
T PRK00714 99 WFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVP 138 (156)
T ss_pred EEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchh
Confidence 88888864322 1 36789999999999998644
No 33
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=1.8e-12 Score=104.30 Aligned_cols=98 Identities=19% Similarity=0.206 Sum_probs=75.2
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..+||++|..++ +|.|.||+|+++.|||+.+||.||+.||+|.++.+. .+++.+.+.|+. ....++
T Consensus 16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~----~~~~~~~h~~~~--------~~~~~~ 83 (128)
T TIGR00586 16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS----EFEKLEYEFYPR--------HITLWF 83 (128)
T ss_pred CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee----eEEEEEEEECCC--------cEEEEE
Confidence 368999987543 689999999999999999999999999999986532 224445555543 236789
Q ss_pred EEEEEEeCCCCC-CCccceEeeccccccccccH
Q psy169 236 FFKAQYLEGDVK-DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 236 ffka~~~~G~~~-~e~~d~~WltkeEl~~~l~~ 267 (280)
+|.++..++... .+..++.|++.+++.++--|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~~p 116 (128)
T TIGR00586 84 WLLERWEGGPPGKEGQPEEWWVLVGLLADDFFP 116 (128)
T ss_pred EEEEEEcCCCcCcccccccEEeCHHHCCccCCC
Confidence 999988766552 34678999999999998444
No 34
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.43 E-value=1.8e-12 Score=102.66 Aligned_cols=96 Identities=25% Similarity=0.389 Sum_probs=76.7
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..+||++|+.+. .|.|.||+|.++.||++.+||.||+.||+|.++.. ..+++.+++.++. ....++
T Consensus 13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~----~~~~~~~~~~~~~--------~~~~~~ 80 (124)
T cd03425 13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV----GELLATVEHDYPD--------KRVTLH 80 (124)
T ss_pred CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec----cceEEEEEeeCCC--------CeEEEE
Confidence 468888887432 67899999999999999999999999999998763 2456667776653 246788
Q ss_pred EEEEEEeCCCCC-CCccceEeeccccccccc
Q psy169 236 FFKAQYLEGDVK-DKKLEYTWAAREELPKLL 265 (280)
Q Consensus 236 ffka~~~~G~~~-~e~~d~~WltkeEl~~~l 265 (280)
+|.+.+..+... .+..++.|++.+|+.++-
T Consensus 81 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 111 (124)
T cd03425 81 VFLVELWSGEPQLLEHQELRWVPPEELDDLD 111 (124)
T ss_pred EEEEeeeCCCcccccCceEEEeeHHHcccCC
Confidence 899988766653 467899999999999973
No 35
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.41 E-value=8.7e-13 Score=106.98 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=72.8
Q ss_pred CcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEEE
Q psy169 157 KHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 157 ~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
+..+||+||..+..|.|.||+|+++.|||+.+||.||+.||+|+.+. +.+++.... ...+.++.. . ....++
T Consensus 14 ~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~-~~~~~~~~~---~---~~~~~~ 86 (129)
T cd04664 14 EGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGAS-IAFVEFTDN---G---RVWTEH 86 (129)
T ss_pred CCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeeccc-ccccccCCC---c---eEEEEe
Confidence 45699999875446789999999999999999999999999999864 222221100 001212111 0 235678
Q ss_pred EEEEEEeCCC-C--CCCccceEeeccccccccccH
Q psy169 236 FFKAQYLEGD-V--KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 236 ffka~~~~G~-~--~~e~~d~~WltkeEl~~~l~~ 267 (280)
+|.+.+..+. . ..++.++.|++.+|+.+.+..
T Consensus 87 ~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~ 121 (129)
T cd04664 87 PFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLW 121 (129)
T ss_pred EEEEEcCCCCcccCCccccccEecCHHHHHHHHcC
Confidence 8888887654 2 346789999999999887544
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1.5e-12 Score=105.81 Aligned_cols=95 Identities=24% Similarity=0.375 Sum_probs=70.0
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++..+ ..+.|.||+|+++.|||+.+||.||++||+|..+... ..++++.. + .+...++
T Consensus 12 ~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~----~~~~~~~~--~---------~~~~~~~ 76 (123)
T cd04671 12 GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT----TLLSVEEQ--G---------GSWFRFV 76 (123)
T ss_pred CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc----eEEEEEcc--C---------CeEEEEE
Confidence 46899988632 3678999999999999999999999999999987632 12222211 1 1235678
Q ss_pred EEEEEeCCCCC------CCccceEeeccccccccccH
Q psy169 237 FKAQYLEGDVK------DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 237 fka~~~~G~~~------~e~~d~~WltkeEl~~~l~~ 267 (280)
|.|+..+|.+. .+..+++|++.+||+-.+.+
T Consensus 77 f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~~~ 113 (123)
T cd04671 77 FTGNITGGDLKTEKEADSESLQARWYSNKDLPLPLRA 113 (123)
T ss_pred EEEEEeCCeEccCCCCCcceEEEEEECHHHCCCccch
Confidence 88999887652 23569999999999655544
No 37
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.41 E-value=1.4e-12 Score=105.29 Aligned_cols=96 Identities=17% Similarity=0.254 Sum_probs=70.8
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+||+++.. .+.|.||+|+++.||++.+||.||+.||+|.++.+. ..++.+.+.|+... . .....++||.
T Consensus 13 ~vLl~~~~~--~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~--~--~~~~~~~~f~ 82 (126)
T cd04688 13 KLLVQKNPD--ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT----RLLGVVENIFTYNG--K--PGHEIEFYYL 82 (126)
T ss_pred EEEEEEeCC--CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc----eeeEEEEEeeccCC--c--ccEEEEEEEE
Confidence 588888773 568999999999999999999999999999977642 23334332222110 0 0235688999
Q ss_pred EEEeCCCCC----------CCccceEeecccccccc
Q psy169 239 AQYLEGDVK----------DKKLEYTWAAREELPKL 264 (280)
Q Consensus 239 a~~~~G~~~----------~e~~d~~WltkeEl~~~ 264 (280)
|.+..|... .++.++.|++.++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 83 VTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred EEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 999877652 35689999999999865
No 38
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.41 E-value=9.9e-13 Score=110.10 Aligned_cols=95 Identities=20% Similarity=0.196 Sum_probs=65.5
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
..|||+|+.. .+.|.||||+++.|||+.+||.|||.||||+++..+.. +. .|..... .+..+.+|
T Consensus 14 ~~vLLvr~~~--~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~---~~-~~~~~~~---------~~~~~~~f 78 (145)
T cd03672 14 DKVLLVKGWK--SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID---KD-DYIELII---------RGQNVKLY 78 (145)
T ss_pred CEEEEEEecC--CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc---cc-eeeeccc---------CCcEEEEE
Confidence 3699999863 34899999999999999999999999999998775321 11 1111100 12234455
Q ss_pred EEEEeCCC----C--CCCccceEeeccccccccccH
Q psy169 238 KAQYLEGD----V--KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 238 ka~~~~G~----~--~~e~~d~~WltkeEl~~~l~~ 267 (280)
.+....+. + ..++.++.|++.+|+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 79 IVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred EEecCCCCcccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 55444332 1 246789999999999988554
No 39
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.41 E-value=3.1e-12 Score=105.54 Aligned_cols=115 Identities=21% Similarity=0.172 Sum_probs=74.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEE-Eecc-cceEEEEeeCCcc-ccccccccceEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHAR-FYGN-APCGFYKFKYPKS-LQAESNVVGAKL 234 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~-~vg~-~P~g~~~~~yp~~-~~~~~~~~g~kv 234 (280)
..+||+++.. .|.|.||+|+++.|||+.+||.||++||+|.++... +.+. .+. ..+.++.. .+.... .....
T Consensus 15 ~~vLLv~r~~--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 89 (138)
T cd03674 15 GKVLLTHHRK--LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDL--DVHPIDGHPKRGVPG-HLHLD 89 (138)
T ss_pred CeEEEEEEcC--CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccc--eeEeecCCCCCCCCC-cEEEE
Confidence 4688998863 468999999999999999999999999999976532 1110 011 11111111 000000 11133
Q ss_pred EEEEEEEeCCCCC----CCccceEeecccccccc-ccHHHHHHHHhhh
Q psy169 235 FFFKAQYLEGDVK----DKKLEYTWAAREELPKL-LLEDYNKNISLFL 277 (280)
Q Consensus 235 fffka~~~~G~~~----~e~~d~~WltkeEl~~~-l~~~y~~~v~~~L 277 (280)
++|.|.+..|... .+..++.|++.+|+..+ +.+.....|.+.|
T Consensus 90 ~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 90 LRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred EEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 5688877666642 46789999999999665 5566777776655
No 40
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=2.7e-12 Score=103.95 Aligned_cols=99 Identities=25% Similarity=0.409 Sum_probs=68.1
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEE----EeeCCccccccccccceEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY----KFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~----~~~yp~~~~~~~~~~g~kv 234 (280)
.+||++++. .+.|.||+|.++.|||+.+||.||+.||+|+.+... ..++.+ .|..+.. +.......
T Consensus 20 ~vLL~~r~~--~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~ 89 (132)
T cd04677 20 EVLLQKRSD--TGDWGLPGGAMELGESLEETARRELKEETGLEVEEL----ELLGVYSGKEFYVKPNG----DDEQYIVT 89 (132)
T ss_pred CEEEEEecC--CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeee----EEEEEecCCceeecCCC----CcEEEEEE
Confidence 477788763 368999999999999999999999999999987632 112221 1211111 00012445
Q ss_pred EEEEEEEeCCCC---CCCccceEeeccccccccccH
Q psy169 235 FFFKAQYLEGDV---KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 235 fffka~~~~G~~---~~e~~d~~WltkeEl~~~l~~ 267 (280)
+||.+....+.+ ..+..++.|++.+|+.+.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~ 125 (132)
T cd04677 90 LYYVTKVFGGKLVPDGDETLELKFFSLDELPELINP 125 (132)
T ss_pred EEEEEeccCCcccCCCCceeeEEEEChhHCccchhH
Confidence 666666655553 246789999999999998776
No 41
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.39 E-value=5.3e-12 Score=100.88 Aligned_cols=101 Identities=26% Similarity=0.397 Sum_probs=69.5
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEE-EecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHAR-FYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~-~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+||..+ +.|.||+|+++.|||+.+||.||++||+|..+... +++....-.+.+.|+... ......++
T Consensus 14 ~~vLl~~r~~~--~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 86 (129)
T cd04676 14 GRVLLIRRSDN--GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGD-----VRQYLDIT 86 (129)
T ss_pred CeEEEEEecCC--CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCC-----cEEEEEEE
Confidence 45888998743 78999999999999999999999999999976531 211100001122333211 01345667
Q ss_pred EEEEEeCCCC---CCCccceEeeccccccccc
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKLL 265 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~l 265 (280)
|.+....+.. ..+..++.|++.+|+.++.
T Consensus 87 ~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~ 118 (129)
T cd04676 87 FRCRVVGGELRVGDDESLDVAWFDPDGLPPLL 118 (129)
T ss_pred EEEEeeCCeecCCCCceeEEEEEChhhCcccc
Confidence 7787776654 2467899999999999983
No 42
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=3.5e-12 Score=102.79 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=69.9
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+||++++. .+.|.||||+++.|||+.+||.||++||+|+.+... ..++.+.+..... .........+||.
T Consensus 14 ~vLL~~~~~--~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~f~ 84 (123)
T cd04672 14 KILLVREKS--DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR----KLAAVDDRNKHHP---PPQPYQVYKLFFL 84 (123)
T ss_pred EEEEEEEcC--CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe----EEEEEeccccccC---CCCceEEEEEEEE
Confidence 578888873 578999999999999999999999999999976431 2233332210000 0000234567899
Q ss_pred EEEeCCCC--CCCccceEeeccccccccc
Q psy169 239 AQYLEGDV--KDKKLEYTWAAREELPKLL 265 (280)
Q Consensus 239 a~~~~G~~--~~e~~d~~WltkeEl~~~l 265 (280)
|++..+.+ ..+..+++|++.++|.+..
T Consensus 85 ~~~~~~~~~~~~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 85 CEILGGEFKPNIETSEVGFFALDDLPPLS 113 (123)
T ss_pred EEecCCcccCCCceeeeEEECHHHCcccc
Confidence 99987765 3567899999999998864
No 43
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.37 E-value=2e-12 Score=103.83 Aligned_cols=104 Identities=26% Similarity=0.322 Sum_probs=75.9
Q ss_pred EEEEEEecCC---CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 159 LVLLIKEKLG---DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 159 LyLLVk~~~g---~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
.+||+|+... ..+.|.||+|+++.|||+.+||.||+.||+|+++... ...+.+.+.. +.... .+..++
T Consensus 15 ~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~--~~~~~~~~~~--~~~~~-----~~~~~~ 85 (134)
T PF00293_consen 15 KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPL--ELLGLFSYPS--PSGDP-----EGEIVI 85 (134)
T ss_dssp EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEE--EEEEEEEEEE--TTTES-----SEEEEE
T ss_pred EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceeccc--ccceeeeecc--cCCCc-----ccEEEE
Confidence 6899998854 2578999999999999999999999999999987421 1122333333 22210 246788
Q ss_pred EEEEEEeCCCC----C-CCccceEeeccccccccccHHHHH
Q psy169 236 FFKAQYLEGDV----K-DKKLEYTWAAREELPKLLLEDYNK 271 (280)
Q Consensus 236 ffka~~~~G~~----~-~e~~d~~WltkeEl~~~l~~~y~~ 271 (280)
+|.+.+..+.. . .++.++.|++.+|+.+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 126 (134)
T PF00293_consen 86 FFIAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIR 126 (134)
T ss_dssp EEEEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHH
T ss_pred EEEEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchh
Confidence 88888876652 1 378999999999999986665444
No 44
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.36 E-value=2.2e-12 Score=105.77 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=68.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
.-+||+||.....|.|.||+|+++.|||+.+||.||++||+|+++... ..++.+.+.++ ....++|
T Consensus 12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~----~~l~~~~~~~~----------~~~~~~f 77 (131)
T cd03429 12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI----RYVGSQPWPFP----------SSLMLGF 77 (131)
T ss_pred CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee----EEEeecCCCCC----------ceEEEEE
Confidence 458888887433678999999999999999999999999999987532 22333333222 1245667
Q ss_pred EEEEeCCCCC---CCccceEeecccccccc
Q psy169 238 KAQYLEGDVK---DKKLEYTWAAREELPKL 264 (280)
Q Consensus 238 ka~~~~G~~~---~e~~d~~WltkeEl~~~ 264 (280)
.|....+.+. .++.++.|++.++|.+.
T Consensus 78 ~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 78 TAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 8887766652 46789999999997764
No 45
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.36 E-value=5.8e-12 Score=99.93 Aligned_cols=94 Identities=22% Similarity=0.300 Sum_probs=69.0
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEE-EEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHA-RFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v-~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
.-+||+|++. |.|.||+|+++.||++.+||.||+.||+|+.+.. .++ ..+. . .....++
T Consensus 11 ~~vLlv~r~~---~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~-------~~~~--~--------~~~~~~~ 70 (112)
T cd04667 11 GRVLLVRKSG---SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL-------FHVD--G--------GSTRHHV 70 (112)
T ss_pred CEEEEEEcCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEE-------EEEe--C--------CCEEEEE
Confidence 4589999873 6899999999999999999999999999997542 111 1221 1 1134577
Q ss_pred EEEEEeCCCC---CCCccceEeeccccccccccHHHHH
Q psy169 237 FKAQYLEGDV---KDKKLEYTWAAREELPKLLLEDYNK 271 (280)
Q Consensus 237 fka~~~~G~~---~~e~~d~~WltkeEl~~~l~~~y~~ 271 (280)
|.|.+..+.. ..++.++.|++.+|+.++..+.-.+
T Consensus 71 f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~ 108 (112)
T cd04667 71 FVASVPPSAQPKPSNEIADCRWLSLDALGDLNASAATR 108 (112)
T ss_pred EEEEcCCcCCCCCchheeEEEEecHHHhhhcccchhhh
Confidence 8887765533 2467899999999999886554333
No 46
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.35 E-value=4.4e-12 Score=102.10 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=69.7
Q ss_pred cEEEEEEecCC----CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLG----DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g----~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+||++|... ..|.|.||+|+++.|||+.+||.||+.||+|+++....+ .....|.++. ....
T Consensus 12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~----~~~~~~~~~~--------~~~~ 79 (122)
T cd04682 12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI----PWFRVYPSAS--------PPGT 79 (122)
T ss_pred CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc----ceeEecccCC--------CCce
Confidence 46899998643 147999999999999999999999999999998753111 1122332221 1346
Q ss_pred EEEEEEEEeCCC-C---CCCccceEeecccccccc
Q psy169 234 LFFFKAQYLEGD-V---KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 234 vfffka~~~~G~-~---~~e~~d~~WltkeEl~~~ 264 (280)
.++|.+....+. . ..++.++.|++.+||.+.
T Consensus 80 ~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 80 EHVFVVPLTAREDAILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred EEEEEEEEecCCCccccCchhheeecccHHHHhhc
Confidence 788888887664 2 256799999999999776
No 47
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.34 E-value=9.8e-12 Score=101.34 Aligned_cols=91 Identities=26% Similarity=0.430 Sum_probs=69.7
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
.-+||+||..+ ..|.|.||+|+++.||++.+||.||+.||+|..+... .+.+++. +|. .....+|
T Consensus 24 ~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~----~~~~~~~--~~~--------~~~~~~~ 89 (130)
T cd04511 24 GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID----GLYAVYS--VPH--------ISQVYMF 89 (130)
T ss_pred CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee----eEEEEEe--cCC--------ceEEEEE
Confidence 34899988632 3578999999999999999999999999999987532 2344433 332 2346788
Q ss_pred EEEEEeCCCC--CCCccceEeecccccc
Q psy169 237 FKAQYLEGDV--KDKKLEYTWAAREELP 262 (280)
Q Consensus 237 fka~~~~G~~--~~e~~d~~WltkeEl~ 262 (280)
|.|++..+.+ ..+..+..|++.++|+
T Consensus 90 f~~~~~~~~~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 90 YRARLLDLDFAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEcCCcccCCcchhceEEECHHHCC
Confidence 9999987765 3467899999999997
No 48
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.33 E-value=5e-12 Score=101.50 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=69.8
Q ss_pred cEEEEEEecCCC---CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 158 HLVLLIKEKLGD---KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
..+||+||.... +|.|.||+|+++.|||+.+||.||+.||+|+.+...-. . .+.+.+. ... . .....
T Consensus 13 ~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~--~-~~~~~~~-~~~---~---~~~~~ 82 (129)
T cd04699 13 GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR--Y-PSTVTHE-DSG---V---YNVIY 82 (129)
T ss_pred CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee--e-eEEEEEc-CCC---E---EEEEE
Confidence 358888887432 67899999999999999999999999999998764221 1 1122221 110 0 12345
Q ss_pred EEEEEEEeCCCC--CCCccceEeeccccccccccHH
Q psy169 235 FFFKAQYLEGDV--KDKKLEYTWAAREELPKLLLED 268 (280)
Q Consensus 235 fffka~~~~G~~--~~e~~d~~WltkeEl~~~l~~~ 268 (280)
++|.|+...+.. ..+..++.|++.+++..+..+.
T Consensus 83 ~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~ 118 (129)
T cd04699 83 LVFVCEALSGAVKLSDEHEEYAWVTLEELAILKADI 118 (129)
T ss_pred EEEEeeecCCcccCChhheEEEEecHHHhhhhhccc
Confidence 667787776543 3467899999999997765543
No 49
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.31 E-value=4.7e-12 Score=102.47 Aligned_cols=98 Identities=22% Similarity=0.288 Sum_probs=67.0
Q ss_pred cEEEEEEecCCC---CCceecC-CeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLGD---KSHWIMP-FGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W~FP-~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+||+||.... .|.|.|| ||+++.|||+ +||.||++||+|+++.+. .-.+++.+.+..+. . ..
T Consensus 12 g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~--------~-~~ 79 (127)
T cd04693 12 GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS--ELRPLFRYFFEAEG--------F-DD 79 (127)
T ss_pred CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh--hcEEEEEEEeecCC--------e-EE
Confidence 357888887432 4789998 8999999999 999999999999987631 11244444443221 1 12
Q ss_pred EEEEEEEEeCCCCC---CCccceEeeccccccccccH
Q psy169 234 LFFFKAQYLEGDVK---DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 234 vfffka~~~~G~~~---~e~~d~~WltkeEl~~~l~~ 267 (280)
+++|.+....+... .++.++.|++.+|+.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 116 (127)
T cd04693 80 YYLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLIGH 116 (127)
T ss_pred EEEEEecCcccccccCHHHhhhEEEeCHHHHHHHHhc
Confidence 34444444444432 46799999999999887643
No 50
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.30 E-value=1.4e-11 Score=100.95 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=66.2
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
.-+||+++.. .+.|.||+|.++.|||+.+||.||++||+|..+... ..+++.+...++...... .......+||
T Consensus 11 ~~vLLv~~~~--~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~-~~~~~~~~~~ 84 (131)
T cd04686 11 DKILLLYTKR--YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRV---IEKFGTYTERRPWRKPDA-DIFHMISYYY 84 (131)
T ss_pred CEEEEEEEcC--CCcEECccccCCCCCCHHHHHHHHHHHHHCCccccc---ceEEEEEEeeccccCCCC-ceeEEEEEEE
Confidence 3588888863 358999999999999999999999999999975211 123344432222110000 0123457889
Q ss_pred EEEEeCCCC--CCC---c---cceEeecccccccc
Q psy169 238 KAQYLEGDV--KDK---K---LEYTWAAREELPKL 264 (280)
Q Consensus 238 ka~~~~G~~--~~e---~---~d~~WltkeEl~~~ 264 (280)
.|.+..+.. ..+ . .++.|++.+|+.+-
T Consensus 85 ~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 85 LCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred EEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 998875432 211 1 35899999998765
No 51
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.29 E-value=1.6e-11 Score=102.78 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=71.5
Q ss_pred CcEEEEEEecCC---CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 157 KHLVLLIKEKLG---DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 157 ~~LyLLVk~~~g---~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
+..+||+||..+ -.|.|.||+|+++.||++.+||.||+.||+|+++........+++++.+.||.............
T Consensus 12 ~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 91 (143)
T cd04694 12 DQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHI 91 (143)
T ss_pred CCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeE
Confidence 346899998743 25789999999999999999999999999999876321111344555544443211110001223
Q ss_pred EEEEEEEEeCC------C--C-CCCccceEeeccccccccccH
Q psy169 234 LFFFKAQYLEG------D--V-KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 234 vfffka~~~~G------~--~-~~e~~d~~WltkeEl~~~l~~ 267 (280)
++||.+....+ . + ..++.+++|++.+++.++++.
T Consensus 92 ~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~ 134 (143)
T cd04694 92 VVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSA 134 (143)
T ss_pred EEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHh
Confidence 33443333322 1 1 147899999999999998764
No 52
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.28 E-value=2e-11 Score=99.14 Aligned_cols=96 Identities=23% Similarity=0.263 Sum_probs=67.1
Q ss_pred EEEEEEecCCC---CCceec-CCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 159 LVLLIKEKLGD---KSHWIM-PFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 159 LyLLVk~~~g~---~~~W~F-P~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
.+||++|.... .|.|.| |||+++.||++.+||.||+.||+|+.+. ...+++.+.+..+. .....
T Consensus 13 ~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~----~l~~~~~~~~~~~~--------~~~~~ 80 (126)
T cd04697 13 KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV----QLTPLGLFYYDTDG--------NRVWG 80 (126)
T ss_pred eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc----ccEEeeEEEecCCC--------ceEEE
Confidence 46777776332 467999 6899999999999999999999999875 12345555543211 11234
Q ss_pred EEEEEEEeCCCCC---CCccceEeeccccccccccH
Q psy169 235 FFFKAQYLEGDVK---DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 235 fffka~~~~G~~~---~e~~d~~WltkeEl~~~l~~ 267 (280)
.+|.+.+. +.+. .++.+++|++.+|+.+.+..
T Consensus 81 ~~f~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~~~ 115 (126)
T cd04697 81 KVFSCVYD-GPLKLQEEEVEEITWLSINEILQFKEG 115 (126)
T ss_pred EEEEEEEC-CCCCCCHhHhhheEEcCHHHHHHHhhc
Confidence 45667653 4432 46789999999999987543
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.27 E-value=3.5e-11 Score=114.08 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=79.9
Q ss_pred cEEEEEEecCC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||++|+.+ +.|.|.||||.++.|||+.+||.||+.||+|+++....+..+-...+.|.+|..... .....++
T Consensus 214 g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~----~~~i~~~ 289 (340)
T PRK05379 214 GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLR----GRTITHA 289 (340)
T ss_pred CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCC----CcEEEEE
Confidence 46999998742 367899999999999999999999999999998653211111112234445543110 1234566
Q ss_pred EEEEEeCCCC-----CCCccceEeecccccccc---ccHHHHHHHHhhhh
Q psy169 237 FKAQYLEGDV-----KDKKLEYTWAAREELPKL---LLEDYNKNISLFLM 278 (280)
Q Consensus 237 fka~~~~G~~-----~~e~~d~~WltkeEl~~~---l~~~y~~~v~~~L~ 278 (280)
|.+.+..|.. .++..++.|++.+|+... +..+...-|..||.
T Consensus 290 f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~~ 339 (340)
T PRK05379 290 FLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFLG 339 (340)
T ss_pred EEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHhc
Confidence 6676665542 246799999999999874 55677777777763
No 54
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=3.3e-11 Score=95.84 Aligned_cols=96 Identities=21% Similarity=0.313 Sum_probs=66.8
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+||++++ +.+.|.||+|.+++||++.+||.||+.||+|+++...-+ ..++.+.+ +... ... ....+++|.
T Consensus 13 ~vLl~~r~--~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~--~~~~~~~~--~~~~--~~~-~~~~~~~f~ 83 (118)
T cd04690 13 RVLLVRKR--GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL--EYLGTFRA--PAAN--EPG-VDVRATVYV 83 (118)
T ss_pred eEEEEEEC--CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEec--cccc--CCC-cEEEEEEEE
Confidence 57888887 356899999999999999999999999999997653101 12232322 1110 000 235778888
Q ss_pred EEEeCCCC--CCCccceEeecccccccc
Q psy169 239 AQYLEGDV--KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 239 a~~~~G~~--~~e~~d~~WltkeEl~~~ 264 (280)
+.... .+ ..++.++.|++.+|+...
T Consensus 84 ~~~~~-~~~~~~e~~~~~W~~~~e~~~~ 110 (118)
T cd04690 84 AELTG-EPVPAAEIEEIRWVDYDDPADD 110 (118)
T ss_pred EcccC-CcCCCchhhccEEecHHHcccc
Confidence 87765 33 246789999999998554
No 55
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.26 E-value=1.5e-11 Score=103.88 Aligned_cols=97 Identities=20% Similarity=0.054 Sum_probs=67.4
Q ss_pred CcEEEEEEecCC---CCCceecCCeecCCC-CCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccce
Q psy169 157 KHLVLLIKEKLG---DKSHWIMPFGKRQEG-ETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGA 232 (280)
Q Consensus 157 ~~LyLLVk~~~g---~~~~W~FP~G~ve~g-Etl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~ 232 (280)
+..+||+||..+ ..|.|.||+|+++.| ||+.+||.||++||+|+++... ..++.+...+.. .+.
T Consensus 15 ~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~--------~~~ 82 (157)
T cd03426 15 ELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV----EVLGRLPPYYTR--------SGF 82 (157)
T ss_pred ceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce----EEEEECCCcccc--------CCC
Confidence 356999998753 257899999999999 9999999999999999987631 122221111111 123
Q ss_pred EEEEEEEEEeCC-CC--C-CCccceEeeccccccccc
Q psy169 233 KLFFFKAQYLEG-DV--K-DKKLEYTWAAREELPKLL 265 (280)
Q Consensus 233 kvfffka~~~~G-~~--~-~e~~d~~WltkeEl~~~l 265 (280)
.+++|.+.+..+ .+ . .++.++.|++.+|+.+.-
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 83 VVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EEEEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCcC
Confidence 455566665543 22 2 367999999999998863
No 56
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.26 E-value=1.7e-11 Score=100.30 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=68.5
Q ss_pred cEEEEEEecC-C-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEE
Q psy169 158 HLVLLIKEKL-G-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 158 ~LyLLVk~~~-g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
..+||+++.. + ..+.|.||+|+++.||++.+||.||+.||+|+.+. +..+ +.+.+. +.. ....+
T Consensus 14 ~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~-----~~~~~~-~~~-------~~~~~ 80 (137)
T cd03424 14 GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKL-----GSFYPS-PGF-------SDERI 80 (137)
T ss_pred CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEE-----eeEecC-Ccc-------cCccE
Confidence 4577776542 2 24689999999999999999999999999999874 2222 222211 111 23457
Q ss_pred EEEEEEEeCCCC-----CCCccceEeeccccccccccH
Q psy169 235 FFFKAQYLEGDV-----KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 235 fffka~~~~G~~-----~~e~~d~~WltkeEl~~~l~~ 267 (280)
++|.+....+.. ..++.++.|++.+|+.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~ 118 (137)
T cd03424 81 HLFLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELLAD 118 (137)
T ss_pred EEEEEEcccccccCCCCCCCeeEEEEecHHHHHHHHHc
Confidence 777787776542 246899999999999987654
No 57
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.24 E-value=3.8e-11 Score=100.74 Aligned_cols=97 Identities=27% Similarity=0.424 Sum_probs=67.5
Q ss_pred EEEEEEecC-CCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 159 LVLLIKEKL-GDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 159 LyLLVk~~~-g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
.+|||||+. ...|.|.||||.++.|||+.+||.||++||||.++..- ..++ .|..|.... .. ..+.++||
T Consensus 22 ~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~----~~~~--v~~~~~rd~-r~--~~v~~~~~ 92 (145)
T COG1051 22 RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVL----ELLA--VFDDPGRDP-RG--HHVSFLFF 92 (145)
T ss_pred EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccce----eEEE--EecCCCCCC-ce--eEEEEEEE
Confidence 699999873 23578999999999999999999999999999996531 1222 333343210 11 23445555
Q ss_pred EEEEeCCCC--CC--CccceEeeccccccccc
Q psy169 238 KAQYLEGDV--KD--KKLEYTWAAREELPKLL 265 (280)
Q Consensus 238 ka~~~~G~~--~~--e~~d~~WltkeEl~~~l 265 (280)
.+.. .|.. .. ...+..|++.++|....
T Consensus 93 ~~~~-~g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 93 AAEP-EGELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EEec-CCCcccCChhhHhhcceecHhHccccc
Confidence 5544 4443 22 56899999999999753
No 58
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.22 E-value=7.4e-11 Score=107.79 Aligned_cols=94 Identities=22% Similarity=0.376 Sum_probs=71.3
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
..+||+++.....|.|.||+|.++.|||+.+||.||+.||+|+++. +.++ +...+.||. ..+++
T Consensus 143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~-----~s~~~~~p~----------~lm~~ 207 (256)
T PRK00241 143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYV-----GSQPWPFPH----------SLMLG 207 (256)
T ss_pred CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEE-----EeEeecCCC----------eEEEE
Confidence 3588888764336789999999999999999999999999999765 2222 223333332 35677
Q ss_pred EEEEEeCCCCC---CCccceEeecccccccccc
Q psy169 237 FKAQYLEGDVK---DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 237 fka~~~~G~~~---~e~~d~~WltkeEl~~~l~ 266 (280)
|.|.+..|.+. .+..+..|++.+|++....
T Consensus 208 f~a~~~~~~~~~~~~Ei~~a~W~~~del~~lp~ 240 (256)
T PRK00241 208 FHADYDSGEIVFDPKEIADAQWFRYDELPLLPP 240 (256)
T ss_pred EEEEecCCcccCCcccEEEEEEECHHHCcccCC
Confidence 88988877763 3678999999999987643
No 59
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.21 E-value=1e-10 Score=91.51 Aligned_cols=99 Identities=28% Similarity=0.457 Sum_probs=73.0
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+||+|+..+..|.|.||+|.++.||++.++|.||+.||+|+.+... ...+.+.|..+.. . .....++|.
T Consensus 13 ~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~---~---~~~~~~~~~ 82 (123)
T cd02883 13 RVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL----RLLGVYEVESPDE---G---EHAVVFVFL 82 (123)
T ss_pred CEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee----eEEEEEEeeccCC---C---ceEEEEEEE
Confidence 47888887422578999999999999999999999999999977521 2233444433321 0 246788899
Q ss_pred EEEeCCCC----CCCccceEeeccccccccccH
Q psy169 239 AQYLEGDV----KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 239 a~~~~G~~----~~e~~d~~WltkeEl~~~l~~ 267 (280)
++...+.. ..+..++.|++.+++.++..+
T Consensus 83 ~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~~~ 115 (123)
T cd02883 83 ARLVGGEPTLLPPDEISEVRWVTLDELPALALS 115 (123)
T ss_pred EEeCCCCcCCCCCCccceEEEEcHHHCcccccc
Confidence 98887655 245689999999999986444
No 60
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.20 E-value=3.5e-11 Score=99.86 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=69.0
Q ss_pred cEEEEEEecCCC---CCceec-CCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLGD---KSHWIM-PFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W~F-P~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+|+.+|.... .|.|.| |+|+++.|||+.+||.|||.||+|+.+... .-.+++.+.+.+... ........
T Consensus 17 ~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~--~l~~~~~~~~~~~~~---~~~~~~~~ 91 (144)
T cd04692 17 GYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSAD--DLIPLGTFKIEYDHI---GKLIDREF 91 (144)
T ss_pred CEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChH--HeEEeeEEEEecccc---CCCccceE
Confidence 567888876432 478999 599999999999999999999999976421 112344455443210 00001123
Q ss_pred EEEEEEEEeC--CCC---CCCccceEeeccccccccccH
Q psy169 234 LFFFKAQYLE--GDV---KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 234 vfffka~~~~--G~~---~~e~~d~~WltkeEl~~~l~~ 267 (280)
.++|.+.... +.+ ..++.++.|++.+||.+.+..
T Consensus 92 ~~~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~ 130 (144)
T cd04692 92 HHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELLEE 130 (144)
T ss_pred EEEEEEeccCChhhcCCChhHhheEEEECHHHHHHHHHc
Confidence 4555565543 433 246799999999999887654
No 61
>PRK08999 hypothetical protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=107.67 Aligned_cols=105 Identities=23% Similarity=0.360 Sum_probs=77.0
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..|||+||..++ .|.|.||+|+++.||++.+||.||+.||+|..+... .+++.+.+.|+.. ...++
T Consensus 17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~----~~l~~~~h~~~~~--------~~~i~ 84 (312)
T PRK08999 17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA----RPLITVRHDYPDK--------RVRLD 84 (312)
T ss_pred CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc----eeEEEEEEEcCCC--------eEEEE
Confidence 358999987443 679999999999999999999999999999987632 2344455555432 24677
Q ss_pred EEEEEEeCCCCC-CCccceEeecccccccc-ccHHHHHHHH
Q psy169 236 FFKAQYLEGDVK-DKKLEYTWAAREELPKL-LLEDYNKNIS 274 (280)
Q Consensus 236 ffka~~~~G~~~-~e~~d~~WltkeEl~~~-l~~~y~~~v~ 274 (280)
+|.+....+.+. .+..++.|++.+|+.++ +.+...+-++
T Consensus 85 ~y~~~~~~~~~~~~e~~~~~Wv~~~el~~~~~~~~~~~i~~ 125 (312)
T PRK08999 85 VRRVTAWQGEPHGREGQPLAWVAPDELAVYPFPPANQPIVR 125 (312)
T ss_pred EEEEEEecCcccCccCCccEEecHHHcccCCCCcchHHHHH
Confidence 888877766543 35789999999999997 4444444333
No 62
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.20 E-value=6.8e-11 Score=100.66 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=69.4
Q ss_pred EEEEEEecCCC---CCceecC-CeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEee--CCccccccccccce
Q psy169 159 LVLLIKEKLGD---KSHWIMP-FGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK--YPKSLQAESNVVGA 232 (280)
Q Consensus 159 LyLLVk~~~g~---~~~W~FP-~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~--yp~~~~~~~~~~g~ 232 (280)
.+||+||+.+. .|.|.+| +|+++.|||+.+||.||+.||+|+.+... ... ++.+.|. ++.... ...
T Consensus 43 ~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~--~~~-~~~~~~~~~~~~~~~-----~~~ 114 (165)
T cd02885 43 RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLL--ELV-LPRFRYRAPDDGGLV-----EHE 114 (165)
T ss_pred cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccch--hhc-cceEEEEEEcCCCce-----eeE
Confidence 47888887543 4789996 89999999999999999999999987632 111 1233332 222100 123
Q ss_pred EEEEEEEEEeCCCC--CCCccceEeeccccccccccH
Q psy169 233 KLFFFKAQYLEGDV--KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 233 kvfffka~~~~G~~--~~e~~d~~WltkeEl~~~l~~ 267 (280)
..++|.+....+.. .+++.++.|++.+|+.+.+..
T Consensus 115 i~~~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 115 IDHVFFARADVTLIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred EEEEEEEEeCCCCCCCccceeEEEEECHHHHHHHHHh
Confidence 45677777654432 246789999999999988755
No 63
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.18 E-value=1.3e-10 Score=100.55 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=70.9
Q ss_pred EEEEEEecCCC---CCce-ecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 159 LVLLIKEKLGD---KSHW-IMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 159 LyLLVk~~~g~---~~~W-~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
.+||++|.... .|.| .||||++++|||+.+||.|||.||+|+..... ..++.+.|..+. .....
T Consensus 50 ~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~----~~~~~~~~~~~~--------~~~~~ 117 (180)
T PRK15393 50 KILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF----AEHGQFYFEDEN--------CRVWG 117 (180)
T ss_pred eEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc----eeceeEEecCCC--------ceEEE
Confidence 46777775322 2344 68999999999999999999999999975321 123444443221 11233
Q ss_pred EEEEEEEeCCCCC---CCccceEeecccccccc---ccHHHHHHHHhhhh
Q psy169 235 FFFKAQYLEGDVK---DKKLEYTWAAREELPKL---LLEDYNKNISLFLM 278 (280)
Q Consensus 235 fffka~~~~G~~~---~e~~d~~WltkeEl~~~---l~~~y~~~v~~~L~ 278 (280)
++|.+.. .|... .++.++.|++.+|+.+. +.+.....+..+|.
T Consensus 118 ~~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~~l~ 166 (180)
T PRK15393 118 ALFSCVS-HGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALALWLT 166 (180)
T ss_pred EEEEEEe-CCCCCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHHHHH
Confidence 4566654 45442 46789999999999986 44556666666654
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.14 E-value=2e-10 Score=94.81 Aligned_cols=96 Identities=26% Similarity=0.358 Sum_probs=67.0
Q ss_pred EEEEEEecCC---CCCceecCCeecCCCCCHHHHHHHHHHHHhCCce-EEEEecccceEEEE--eeCCccccccccccce
Q psy169 159 LVLLIKEKLG---DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI-HARFYGNAPCGFYK--FKYPKSLQAESNVVGA 232 (280)
Q Consensus 159 LyLLVk~~~g---~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i-~v~~vg~~P~g~~~--~~yp~~~~~~~~~~g~ 232 (280)
-+||+++..+ ..+.|.||+|.++.||++.+||.||+.||+|..+ .+ + ..+.... |.++.. . ...
T Consensus 13 ~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~---~-~~~~~~~~~f~~~~~---~---~~~ 82 (133)
T cd04685 13 RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADL---G-PPVWRRDAAFTFLGV---D---GRQ 82 (133)
T ss_pred eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccc---c-ceEEEEEEEEEecCc---c---cee
Confidence 4888877643 3568999999999999999999999999999987 32 1 1122222 333321 0 124
Q ss_pred EEEEEEEEEeCCCCC---------CCccceEeecccccccc
Q psy169 233 KLFFFKAQYLEGDVK---------DKKLEYTWAAREELPKL 264 (280)
Q Consensus 233 kvfffka~~~~G~~~---------~e~~d~~WltkeEl~~~ 264 (280)
..+||.++...+.+. .+..+++|++.+||.+.
T Consensus 83 ~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 83 EERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 578899987654431 13468999999999875
No 65
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.13 E-value=6e-10 Score=91.47 Aligned_cols=95 Identities=23% Similarity=0.289 Sum_probs=63.6
Q ss_pred cEEEEEEecC-----CCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCcccc-------c
Q psy169 158 HLVLLIKEKL-----GDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQ-------A 225 (280)
Q Consensus 158 ~LyLLVk~~~-----g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~-------~ 225 (280)
-.+||+++.. ...+.|.||+|+++.||++.+||.||+.||+|+.+...+.. ++.+. ++.... .
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~~---l~~~~--~~~~~~v~~fl~~~ 89 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFID---LGSLK--QSGGKVVHAWAVEA 89 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEEe---EEEEE--CCCCeEEEEEEEEe
Confidence 3588887521 23578999999999999999999999999999976522211 11111 111100 0
Q ss_pred cccccceEEEEEEEEEeCCCCC----CCccceEeec
Q psy169 226 ESNVVGAKLFFFKAQYLEGDVK----DKKLEYTWAA 257 (280)
Q Consensus 226 ~~~~~g~kvfffka~~~~G~~~----~e~~d~~Wlt 257 (280)
+......+.++|.+....|++. ++.++++|++
T Consensus 90 ~~d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 90 DLDITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred cCChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 0111246788899998887762 5779999997
No 66
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.07 E-value=4.5e-10 Score=95.15 Aligned_cols=99 Identities=21% Similarity=0.213 Sum_probs=65.8
Q ss_pred EEEEEEecCCC---CCceecC-CeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 159 LVLLIKEKLGD---KSHWIMP-FGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 159 LyLLVk~~~g~---~~~W~FP-~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
.+||+||..+. .|.|.+| +|+++.|| .+||.||+.||+|+.+...-+.....-.|.+.++.. .....
T Consensus 40 ~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g-------~~~~~ 110 (158)
T TIGR02150 40 QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG-------EHELC 110 (158)
T ss_pred eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC-------cEEEE
Confidence 38888887542 4789997 79999999 399999999999998753211111111233333321 12445
Q ss_pred EEEEEEEeC-CCCC-CCccceEeecccccccccc
Q psy169 235 FFFKAQYLE-GDVK-DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 235 fffka~~~~-G~~~-~e~~d~~WltkeEl~~~l~ 266 (280)
++|.+.... ..+. .++.++.|++.+||.+++.
T Consensus 111 ~~f~~~~~~~~~~~~~Ev~~~~W~~~~el~~~~~ 144 (158)
T TIGR02150 111 PVFFARAPVPLNPNPEEVAEYRWVSLEELKEILK 144 (158)
T ss_pred EEEEEecCCcccCChhHeeeEEEeCHHHHHHHHh
Confidence 677776654 2223 3789999999999998865
No 67
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.05 E-value=8.4e-10 Score=95.73 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=66.8
Q ss_pred EEEEEEecCCC---CCceecC-CeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 159 LVLLIKEKLGD---KSHWIMP-FGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 159 LyLLVk~~~g~---~~~W~FP-~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
.+||++|..+. .|.|.+| +|+++.|||+.+||.||+.||+|+.+... . ..++.+.|.++.. .. .......
T Consensus 47 ~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~-~--~~~~~~~~~~~~~--~~-~~~~~~~ 120 (184)
T PRK03759 47 RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDL-E--LVLPDFRYRATDP--NG-IVENEVC 120 (184)
T ss_pred eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccc-c--cccceEEEEEecC--CC-ceeeEEE
Confidence 48888876432 3567765 79999999999999999999999987521 1 1222333322111 00 0012345
Q ss_pred EEEEEEEeCCCCC---CCccceEeeccccccccccH
Q psy169 235 FFFKAQYLEGDVK---DKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 235 fffka~~~~G~~~---~e~~d~~WltkeEl~~~l~~ 267 (280)
++|.++.. |.+. .++.++.|++.+||.+.+..
T Consensus 121 ~vf~~~~~-~~~~~~~~Ev~~~~W~~~~el~~~i~~ 155 (184)
T PRK03759 121 PVFAARVT-SALQPNPDEVMDYQWVDPADLLRAVDA 155 (184)
T ss_pred EEEEEEEC-CCCCCChhHeeeEEEECHHHHHHHHHh
Confidence 67788776 4442 46799999999999887553
No 68
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.02 E-value=3.5e-09 Score=85.98 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=59.2
Q ss_pred EEEEEec-CCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 160 VLLIKEK-LGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 160 yLLVk~~-~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
+||++|. ....|.|.||+|.++.|||+.+||.||+.||+|.++....++ .+ ..|.++. ....+|+|.
T Consensus 17 ~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~--~~--~~~~~~~--------~~~~~~~~~ 84 (118)
T cd04674 17 LLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIR--LF--DVRSAPD--------GTLLVFGLL 84 (118)
T ss_pred EEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEE--EE--EEEecCC--------CeEEEEEEE
Confidence 4445554 223578999999999999999999999999999987642222 12 2232232 134677777
Q ss_pred EEEeCCCC-----CCCccceEeecccc
Q psy169 239 AQYLEGDV-----KDKKLEYTWAAREE 260 (280)
Q Consensus 239 a~~~~G~~-----~~e~~d~~WltkeE 260 (280)
+....+.. ..+..++.|++...
T Consensus 85 ~~~~~~~~~~~~~~~E~~~~~~~~~~~ 111 (118)
T cd04674 85 PERRAADLPPFEPTDETTERAVVTAPS 111 (118)
T ss_pred eccccccCCCCCCCcceeeEEEccCCc
Confidence 77666553 13567788876543
No 69
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.01 E-value=1.6e-09 Score=94.06 Aligned_cols=97 Identities=24% Similarity=0.224 Sum_probs=66.8
Q ss_pred EEEEEEec-CC-CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEE
Q psy169 159 LVLLIKEK-LG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 159 LyLLVk~~-~g-~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
.+|||++- .+ +...|+||+|.+++||++.+||.|||.||+|..+..+ .+++.+.+. |.. ....+++
T Consensus 60 ~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l----~~l~~~~~~-~~~-------~~~~~~~ 127 (185)
T PRK11762 60 TLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL----TFLKELSLA-PSY-------FSSKMNI 127 (185)
T ss_pred EEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce----EEEEEEecC-CCc-------cCcEEEE
Confidence 47777763 22 2567999999999999999999999999999987643 233333321 221 2346667
Q ss_pred EEEEEeCCCC----CCCccceEeeccccccccccH
Q psy169 237 FKAQYLEGDV----KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 237 fka~~~~G~~----~~e~~d~~WltkeEl~~~l~~ 267 (280)
|.|....+.. ..+..+..|++.+|+.+.+..
T Consensus 128 f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~~~ 162 (185)
T PRK11762 128 VLAEDLYPERLEGDEPEPLEVVRWPLADLDELLAR 162 (185)
T ss_pred EEEEccccccCCCCCCceeEEEEEcHHHHHHHHHc
Confidence 7777654432 134468899999999877544
No 70
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=98.96 E-value=5.6e-09 Score=84.68 Aligned_cols=90 Identities=19% Similarity=0.246 Sum_probs=64.9
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFF 237 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfff 237 (280)
..+||++++ .+.|.||+|+++.||++.+||.||+.||+|..+.. ..+++.+.+.... .+....+|
T Consensus 11 ~~vLl~~~~---~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~----~~~l~~~~~~~~~--------~~~~~~~y 75 (118)
T cd04665 11 DGLLLVRHK---DRGWEFPGGHVEPGETIEEAARREVWEETGAELGS----LTLVGYYQVDLFE--------SGFETLVY 75 (118)
T ss_pred CEEEEEEeC---CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCc----eEEEEEEEecCCC--------CcEEEEEE
Confidence 457888876 34699999999999999999999999999998632 1345555543211 12455667
Q ss_pred EEEEeCCCC---CCCccceEeecccccc
Q psy169 238 KAQYLEGDV---KDKKLEYTWAAREELP 262 (280)
Q Consensus 238 ka~~~~G~~---~~e~~d~~WltkeEl~ 262 (280)
.|.+..+.. ..++....|++.+-..
T Consensus 76 ~a~~~~~~~~~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 76 PAVSAQLEEKASYLETDGPVLFKNEPEE 103 (118)
T ss_pred EEEEEecccccccccccCcEEeccCCcc
Confidence 777776554 3578899999877654
No 71
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=98.94 E-value=7.3e-09 Score=88.06 Aligned_cols=91 Identities=24% Similarity=0.221 Sum_probs=64.8
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
.+|++++.. ..|+||+|++++|||+.+||.|||.||+|..+..+ .++|.|... +.. ......+|.
T Consensus 36 ~~LL~~~~~---~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~----~~lg~~~~~-~~~-------~~~~~~vf~ 100 (156)
T TIGR02705 36 QWLLTEHKR---RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL----HYIGQYEVE-GES-------TDFVKDVYF 100 (156)
T ss_pred EEEEEEEcC---CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeee----EEEEEEEec-CCC-------cEEEEEEEE
Confidence 477777762 35999999999999999999999999999976533 345555442 111 124667788
Q ss_pred EEEeCCCCCCCccceE-eecccccccc
Q psy169 239 AQYLEGDVKDKKLEYT-WAAREELPKL 264 (280)
Q Consensus 239 a~~~~G~~~~e~~d~~-WltkeEl~~~ 264 (280)
|++..+...++..+.. +++.+++.+.
T Consensus 101 A~~~~~~~~~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 101 AEVSALESKDDYLETKGPVLLQEIPDI 127 (156)
T ss_pred EEEeccccCCCceeeEeEEEHHHHHHH
Confidence 8888666555555666 6777777654
No 72
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.90 E-value=1.2e-08 Score=83.74 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=35.7
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCce
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i 202 (280)
..+|+++... +.|.||+|.+++|||+.+||.||+.||+|..+
T Consensus 14 ~~ll~~r~~~---~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 14 LELLVFEHPL---AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEEcCC---CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3556666542 45999999999999999999999999999986
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=98.88 E-value=4.1e-09 Score=90.85 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=69.5
Q ss_pred cEEEEEEecCCC---CCce-ecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLGD---KSHW-IMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W-~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+||.||.... .|.| .+|+|+++.|||+.+||.||+.||+|+.+...- .-.++|...|.|+.. ........
T Consensus 48 ~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~-~l~~~g~~~~~~~~~---~~~~~~e~ 123 (180)
T cd03676 48 LRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVR-QLKPVGVVSYLREGE---AGGLQPEV 123 (180)
T ss_pred eEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHh-hceeccEEEEEEEcC---CCcEeeeE
Confidence 456666766432 5789 699999999999999999999999999765210 012334444443210 00011245
Q ss_pred EEEEEEEEeCCC-C---CCCccceEeeccccccccccH
Q psy169 234 LFFFKAQYLEGD-V---KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 234 vfffka~~~~G~-~---~~e~~d~~WltkeEl~~~l~~ 267 (280)
.++|.+.+..+. + ..++.++.|++.+|+.+.+..
T Consensus 124 ~~~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l~~ 161 (180)
T cd03676 124 EYVYDLELPPDFIPAPQDGEVESFRLLTIDEVLRALKE 161 (180)
T ss_pred EEEEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHHHc
Confidence 777877753322 2 247899999999999887543
No 74
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.87 E-value=1.9e-08 Score=87.80 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=68.0
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEe------------cccceEEEEeeCCccccc
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFY------------GNAPCGFYKFKYPKSLQA 225 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~v------------g~~P~g~~~~~yp~~~~~ 225 (280)
-.+|++|++ ..|.|.||||.+++||++.+||.|||.||+|+++..... ....+++ |..+.....
T Consensus 49 l~vLl~~r~--~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~v--y~~~~~dpr 124 (186)
T cd03670 49 LQFVAIKRP--DSGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEV--YKGYVDDPR 124 (186)
T ss_pred eEEEEEEeC--CCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEE--EeccccCCC
Confidence 368888887 357899999999999999999999999999765432110 0012223 321111111
Q ss_pred cc-cc-cceEEEEEEEE---EeC-CCCC--CCccceEeeccccccccccHHHHHHHHhhh
Q psy169 226 ES-NV-VGAKLFFFKAQ---YLE-GDVK--DKKLEYTWAAREELPKLLLEDYNKNISLFL 277 (280)
Q Consensus 226 ~~-~~-~g~kvfffka~---~~~-G~~~--~e~~d~~WltkeEl~~~l~~~y~~~v~~~L 277 (280)
.+ +. .....++|.+. .+. ..+. ++..+.+|++.++++.+ ..++..-|++++
T Consensus 125 ~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L-~~dH~~Il~~a~ 183 (186)
T cd03670 125 NTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPL-YANHSQFLKKVA 183 (186)
T ss_pred CCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEccccccc-ccCHHHHHHHHH
Confidence 10 00 12334444331 111 1222 35789999999999864 345556666554
No 75
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.85 E-value=3.8e-08 Score=77.49 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=68.7
Q ss_pred cEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEE
Q psy169 158 HLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLF 235 (280)
Q Consensus 158 ~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvf 235 (280)
..+||.||+.++ +|.|+||++.++.+++..++..|++.++.+. . ..+++.+++.|+. ....+.
T Consensus 14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~H~fth--------~~~~~~ 78 (118)
T cd03431 14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRL--S-----LEPLGTVKHTFTH--------FRLTLH 78 (118)
T ss_pred CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCc--c-----cccceeEEEecCC--------eEEEEE
Confidence 459999997554 7899999999999999999999999887654 1 1234556666654 235788
Q ss_pred EEEEEEeCCCCCCCccceEeeccccccccc
Q psy169 236 FFKAQYLEGDVKDKKLEYTWAAREELPKLL 265 (280)
Q Consensus 236 ffka~~~~G~~~~e~~d~~WltkeEl~~~l 265 (280)
+|.|....|. .+..++.|++.+++.++-
T Consensus 79 ~~~~~~~~~~--~~~~~~~W~~~eel~~~~ 106 (118)
T cd03431 79 VYLARLEGDL--LAPDEGRWVPLEELDEYA 106 (118)
T ss_pred EEEEEEeCCC--cCccccEEccHHHHhhCC
Confidence 8888887653 245789999999999973
No 76
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=98.80 E-value=1.3e-08 Score=88.70 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=67.5
Q ss_pred CcEEEEEEecC-C------CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccc
Q psy169 157 KHLVLLIKEKL-G------DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNV 229 (280)
Q Consensus 157 ~~LyLLVk~~~-g------~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~ 229 (280)
+..+|||++-- + +...|+||+|.++.||++.+||.|||.||||....-+ .+++.+ |..|..
T Consensus 56 ~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~----~~~~~~-~~~~g~------- 123 (185)
T TIGR00052 56 KDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL----RKLLSF-YSSPGG------- 123 (185)
T ss_pred CCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce----EEEEEE-EcCCCC-------
Confidence 34577777631 1 2457999999999999999999999999999987532 122222 211221
Q ss_pred cceEEEEEEEEEeCCCC-------CCCccceEeecccccccccc
Q psy169 230 VGAKLFFFKAQYLEGDV-------KDKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 230 ~g~kvfffka~~~~G~~-------~~e~~d~~WltkeEl~~~l~ 266 (280)
....+++|.|++..+.. ..+..+..|++.+|+.+.+.
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~ 167 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIK 167 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHH
Confidence 24578889998765432 13446788999999988753
No 77
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=98.71 E-value=8.9e-08 Score=83.85 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=60.7
Q ss_pred EEEEEEecCC---CCCceecCCeecCCC-CCHHHHHHHHHHHHhCCceEEE-EecccceEEEEeeCCccccccccccceE
Q psy169 159 LVLLIKEKLG---DKSHWIMPFGKRQEG-ETMRQTAERILAEKFNKTIHAR-FYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 159 LyLLVk~~~g---~~~~W~FP~G~ve~g-Etl~qaAeRel~Ee~G~~i~v~-~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
.+|++||... ..|.|.||||+++.| |++.+||.||+.||+|.....+ .+| .+...++. .|..
T Consensus 45 ~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg-----~l~~~~~~--------~~~~ 111 (190)
T PRK10707 45 TLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIG-----VLPPVDSS--------TGYQ 111 (190)
T ss_pred EEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEE-----Eeeeeecc--------CCcE
Confidence 5777775521 257899999999975 7899999999999999976532 233 22211111 1334
Q ss_pred EEEEEEEEeCCC---CC-CCccceEeecccccccc
Q psy169 234 LFFFKAQYLEGD---VK-DKKLEYTWAAREELPKL 264 (280)
Q Consensus 234 vfffka~~~~G~---~~-~e~~d~~WltkeEl~~~ 264 (280)
+..|.+.+..+. ++ +++.+..|++.+++.+.
T Consensus 112 ~~~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 112 VTPVVGIIPPDLPYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred EEEEEEEECCCCCCCCChhhhheEEEEeHHHHhCc
Confidence 444545443221 12 46788999999998765
No 78
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=98.64 E-value=1.9e-07 Score=82.58 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=58.8
Q ss_pred CceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEEEEEeC----C--
Q psy169 171 SHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLE----G-- 244 (280)
Q Consensus 171 ~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffka~~~~----G-- 244 (280)
-.|+||+|.+++||++.+||.|||.||||..+..+ .+++.+.. .|.. ....+++|.|.... +
T Consensus 82 ~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~----~~l~~~~~-spg~-------~~e~~~~fla~~~~~~~~~~~ 149 (202)
T PRK10729 82 WLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRT----KPVLSYLA-SPGG-------TSERSSIMVGEVDATTASGIH 149 (202)
T ss_pred eEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEE----EEEEEEEc-CCCc-------CceEEEEEEEEEcchhcccCC
Confidence 36999999999999999999999999999987643 23332221 1211 23578888888521 1
Q ss_pred C-CC-CCccceEeecccccccccc
Q psy169 245 D-VK-DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 245 ~-~~-~e~~d~~WltkeEl~~~l~ 266 (280)
. .. .+..+..|++.+|+.+.+.
T Consensus 150 ~~~de~E~i~v~~~~~~e~~~~~~ 173 (202)
T PRK10729 150 GLADENEDIRVHVVSREQAYQWVE 173 (202)
T ss_pred CCCCCCCceEEEEEcHHHHHHHHH
Confidence 1 11 2446789999999987643
No 79
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.57 E-value=3.9e-07 Score=72.32 Aligned_cols=45 Identities=29% Similarity=0.434 Sum_probs=39.1
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHH-HHHHHHHHHhCCceE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQ-TAERILAEKFNKTIH 203 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~q-aAeRel~Ee~G~~i~ 203 (280)
..+|++++.... +.|.||+|+++.||++.+ ||.||+.||+|+.+.
T Consensus 24 ~~vl~~~~~~~~-~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 24 GEVLLAQRRDDG-GLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred CEEeEEEccccC-CceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 678888877432 589999999999999988 999999999999876
No 80
>PLN02709 nudix hydrolase
Probab=98.47 E-value=7.1e-07 Score=79.94 Aligned_cols=93 Identities=17% Similarity=0.019 Sum_probs=64.3
Q ss_pred cEEEEEEecCC---CCCceecCCeecCCC-CCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccce
Q psy169 158 HLVLLIKEKLG---DKSHWIMPFGKRQEG-ETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGA 232 (280)
Q Consensus 158 ~LyLLVk~~~g---~~~~W~FP~G~ve~g-Etl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~ 232 (280)
.-+|+++|... ..|.|.||||++++| +++.+||.||+.||+|+... +.++|.-+. +.. + .|.
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~--~~t--~---------sg~ 117 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP--FVN--K---------KGM 117 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC--eEC--C---------CCC
Confidence 35788888642 368999999999997 58999999999999999765 455554332 111 1 245
Q ss_pred EEEEEEEEEeC---CC--CC-CCccceEeeccccccc
Q psy169 233 KLFFFKAQYLE---GD--VK-DKKLEYTWAAREELPK 263 (280)
Q Consensus 233 kvfffka~~~~---G~--~~-~e~~d~~WltkeEl~~ 263 (280)
.|.-|-+.+-. .. ++ .|+.+.-|++.++|.+
T Consensus 118 ~V~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~ 154 (222)
T PLN02709 118 SVAPVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLK 154 (222)
T ss_pred EEEEEEEEecCCCCccccCChhhhheeEEecHHHHhC
Confidence 56666665532 12 22 4788999998887754
No 81
>KOG2839|consensus
Probab=98.40 E-value=5.2e-07 Score=75.04 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=64.4
Q ss_pred EEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 159 LVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 159 LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
-||||....+ ...|.||+|+||++|+..+||.||..||.|+.=+ ++..+.|+..+...+. +. -.|.|.|-
T Consensus 25 eVLlvsSs~~-~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~---l~~~~~g~~~~~~~~~-~~-----~~k~~~~~ 94 (145)
T KOG2839|consen 25 EVLLVSSSKK-PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGK---LGRLLGGFEDFLSKKH-RT-----KPKGVMYV 94 (145)
T ss_pred EEEEEecCCC-CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceee---eeccccchhhccChhh-cc-----cccceeeh
Confidence 7999986642 4679999999999999999999999999999654 2334556665542221 11 12222222
Q ss_pred EEEeCCCC----CC--CccceEeeccccccccccH
Q psy169 239 AQYLEGDV----KD--KKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 239 a~~~~G~~----~~--e~~d~~WltkeEl~~~l~~ 267 (280)
-. ..-++ .. +.....|++.+|.-+....
T Consensus 95 l~-v~e~le~wp~~~~~~r~r~W~~ledA~~~~~~ 128 (145)
T KOG2839|consen 95 LA-VTEELEDWPESEHEFREREWLKLEDAIELCQH 128 (145)
T ss_pred hh-hhhhcccChhhhcccceeEEeeHHHHHHHHhh
Confidence 11 11122 12 3689999999998877553
No 82
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.30 E-value=2.5e-06 Score=74.79 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=57.6
Q ss_pred CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEEEEEeCC-CC--
Q psy169 170 KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEG-DV-- 246 (280)
Q Consensus 170 ~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffka~~~~G-~~-- 246 (280)
+-.|+||.|.+++| ++.+||.|||.||||....-+ .+++.+ | |...- ...++++|.|+.... ..
T Consensus 78 ~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~----~~l~~~-~--~spG~-----s~e~~~lf~a~~~~~~~~~~ 144 (191)
T PRK15009 78 GQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEV----RKLFEL-Y--MSPGG-----VTELIHFFIAEYSDSQRANA 144 (191)
T ss_pred ceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceE----EEeeEE-E--cCCcc-----cCcEEEEEEEEECchhcccC
Confidence 34599999999976 699999999999999977543 122222 2 33211 235788888886421 11
Q ss_pred ----CCCccceEeecccccccccc
Q psy169 247 ----KDKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 247 ----~~e~~d~~WltkeEl~~~l~ 266 (280)
..+..+..|++.+|+.+.+.
T Consensus 145 ~~~de~E~iev~~~~~~e~~~~i~ 168 (191)
T PRK15009 145 GGGVEDEDIEVLELPFSQALEMIK 168 (191)
T ss_pred CCCCCCceEEEEEEcHHHHHHHHH
Confidence 23456899999999988753
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.28 E-value=4.1e-06 Score=76.26 Aligned_cols=116 Identities=17% Similarity=0.206 Sum_probs=64.2
Q ss_pred cEEEEEEecCCC---CCce-----ecCCeecCCCC-------------CHHHHHHHHHHHHhCCceEE-EEecccceEEE
Q psy169 158 HLVLLIKEKLGD---KSHW-----IMPFGKRQEGE-------------TMRQTAERILAEKFNKTIHA-RFYGNAPCGFY 215 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W-----~FP~G~ve~gE-------------tl~qaAeRel~Ee~G~~i~v-~~vg~~P~g~~ 215 (280)
..+||.||.... .|.| ..|.+..+.|| +..+||.|||.||+|+.... -+.--.+++.+
T Consensus 68 g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~ 147 (247)
T PLN02552 68 YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRL 147 (247)
T ss_pred CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEE
Confidence 357777776432 4689 55666555443 27899999999999998541 11001223323
Q ss_pred EeeCC-------ccccccccccceEEEEEEEEEe-CCCCC---CCccceEeecccccccc--------ccHHHHHHHHhh
Q psy169 216 KFKYP-------KSLQAESNVVGAKLFFFKAQYL-EGDVK---DKKLEYTWAAREELPKL--------LLEDYNKNISLF 276 (280)
Q Consensus 216 ~~~yp-------~~~~~~~~~~g~kvfffka~~~-~G~~~---~e~~d~~WltkeEl~~~--------l~~~y~~~v~~~ 276 (280)
.|..+ +..-.+ .....+||. +.. .+.+. .++.++.|++.+||.+. +.|.+..-+.++
T Consensus 148 ~y~~~~~~~~~~~~~~~E---~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw~~~~~~~~ 223 (247)
T PLN02552 148 HYKAADDVTHGPDGKWGE---HELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPWFRLIVDNF 223 (247)
T ss_pred EEecccccccccCCCccc---eEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHHHHHHHHHH
Confidence 33322 211000 011222232 333 33442 47899999999999988 455555555555
Q ss_pred h
Q psy169 277 L 277 (280)
Q Consensus 277 L 277 (280)
|
T Consensus 224 l 224 (247)
T PLN02552 224 L 224 (247)
T ss_pred H
Confidence 4
No 84
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.20 E-value=1.2e-05 Score=63.81 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=58.0
Q ss_pred CcEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 157 KHLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 157 ~~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
+.-|||.||..++ +|.|+||...++...+ .+++.+.+.+..|..+... .+++.+++.|.. .-..+
T Consensus 8 ~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~----~~~~~v~H~fSH--------~~~~~ 74 (114)
T PF14815_consen 8 QGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV----EPLGTVKHVFSH--------RRWTI 74 (114)
T ss_dssp TSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-----S-SEEEEEE-SS--------EEEEE
T ss_pred CCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh----eecCcEEEEccc--------eEEEE
Confidence 4458999998655 8899999999874444 6666666767777765432 366777777643 23578
Q ss_pred EEEEEEEeCCCCCCCccceEeeccccccccccH
Q psy169 235 FFFKAQYLEGDVKDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 235 fffka~~~~G~~~~e~~d~~WltkeEl~~~l~~ 267 (280)
.+|.+.+..+... ...++.|++.+|+.++--|
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~W~~~~~l~~~~~p 106 (114)
T PF14815_consen 75 HVYEVEVSADPPA-EPEEGQWVSLEELDQYPLP 106 (114)
T ss_dssp EEEEEEEE-SS-----TTEEEEEGGGGGGS---
T ss_pred EEEEEEecCCCCC-CCCCcEEEEHHHHhhCCCC
Confidence 8888888866543 4689999999999998444
No 85
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.13 E-value=2.2e-06 Score=78.76 Aligned_cols=92 Identities=24% Similarity=0.419 Sum_probs=66.4
Q ss_pred EEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEEEEEE
Q psy169 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFK 238 (280)
Q Consensus 160 yLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffk 238 (280)
+||.+++..-.|....=.|-||+|||+++|..||+.||+|+.+. +.+++..|. .||.. -+.=|.
T Consensus 157 ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQPW-----PfP~S----------LMigf~ 221 (279)
T COG2816 157 ILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQPW-----PFPHS----------LMLGFM 221 (279)
T ss_pred eeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEeccCC-----CCchh----------hhhhhe
Confidence 55665553224566666788999999999999999999999876 555565553 34442 233377
Q ss_pred EEEeCCCCC---CCccceEeecccccccccc
Q psy169 239 AQYLEGDVK---DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 239 a~~~~G~~~---~e~~d~~WltkeEl~~~l~ 266 (280)
|.+.+|++. .|..|..|++++|+..-++
T Consensus 222 aey~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 222 AEYDSGEITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred eeeccccccCCcchhhhccccCHhHHhhhcC
Confidence 888889874 4779999999999444444
No 86
>PLN02791 Nudix hydrolase homolog
Probab=98.05 E-value=1.8e-05 Score=82.20 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=62.6
Q ss_pred cEEEEEEecCCC---CCceec-CCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 158 HLVLLIKEKLGD---KSHWIM-PFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 158 ~LyLLVk~~~g~---~~~W~F-P~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
..+||.||.... .|.|.+ |+|++..||+..+||.|||.||+|+.+....+ ..++.+.+.+... .........
T Consensus 45 gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l--~~l~~~~~~~~~~--~g~~~e~E~ 120 (770)
T PLN02791 45 QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF--ELLFVFLQECVIN--DGKFINNEY 120 (770)
T ss_pred CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe--eeeeeEEEEeecc--CCCcceeeE
Confidence 346777775432 578999 79999999999999999999999997532100 1222222211100 000001122
Q ss_pred EEEEEEEEeCCC----C---CCCccceEeeccccccccc
Q psy169 234 LFFFKAQYLEGD----V---KDKKLEYTWAAREELPKLL 265 (280)
Q Consensus 234 vfffka~~~~G~----~---~~e~~d~~WltkeEl~~~l 265 (280)
...|.++..... + ..|+.++.|++.+|+.+.+
T Consensus 121 ~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 121 NDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred EEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 333444443322 1 2578999999999997554
No 87
>KOG3084|consensus
Probab=98.04 E-value=5.4e-07 Score=83.54 Aligned_cols=96 Identities=20% Similarity=0.265 Sum_probs=62.6
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEE-EEecccceEEEEeeCCccccccccccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHA-RFYGNAPCGFYKFKYPKSLQAESNVVGAKLFF 236 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v-~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvff 236 (280)
...||.+++.-..|.|..+.|-+|+|||+.|||.||+.||+|+++.. .++...|+- -+|.. ..+++
T Consensus 200 ~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP----~~p~S---------LMIgc 266 (345)
T KOG3084|consen 200 KHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWP----LMPQS---------LMIGC 266 (345)
T ss_pred CEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCC----CCchH---------HHHHH
Confidence 34566665533367999999999999999999999999999998873 222323321 01211 12222
Q ss_pred EEEEEeCCCCC----CCccceEeecccccccccc
Q psy169 237 FKAQYLEGDVK----DKKLEYTWAAREELPKLLL 266 (280)
Q Consensus 237 fka~~~~G~~~----~e~~d~~WltkeEl~~~l~ 266 (280)
+.-.-.+|..+ ++..|..|++++|+.+-+.
T Consensus 267 ~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL~ 300 (345)
T KOG3084|consen 267 LALAKLNGKISVDKDLELEDAQWFDREEVKSALT 300 (345)
T ss_pred HHHHhhCCccccCcchhhhhcccccHHHHHHHHH
Confidence 22222234442 3678999999999987654
No 88
>PLN03143 nudix hydrolase; Provisional
Probab=98.00 E-value=2.4e-05 Score=72.91 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=34.9
Q ss_pred EEEEEEe-cCC-CCCceecCCeecCC-CCCHHHHHHHHHHHHhCCceE
Q psy169 159 LVLLIKE-KLG-DKSHWIMPFGKRQE-GETMRQTAERILAEKFNKTIH 203 (280)
Q Consensus 159 LyLLVk~-~~g-~~~~W~FP~G~ve~-gEtl~qaAeRel~Ee~G~~i~ 203 (280)
.++||+| +.+ +.-.|+||+|.+++ ||++.+||.|||+||+|..+.
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~ 191 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLK 191 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccc
Confidence 3555555 321 24479999999997 489999999999999999753
No 89
>KOG0648|consensus
Probab=96.84 E-value=0.0012 Score=61.26 Aligned_cols=97 Identities=21% Similarity=0.285 Sum_probs=60.5
Q ss_pred cEEEEEEecCC---CCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEE
Q psy169 158 HLVLLIKEKLG---DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 158 ~LyLLVk~~~g---~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
+-+|||+.+.+ ..|.|.||+|.+++||.+-.+|.||++|++|++-. |+.-- +...... ..-..+..-
T Consensus 127 ~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~e--f~eVl---a~r~~H~-----~~~~~~ksd 196 (295)
T KOG0648|consen 127 KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTE--FVEVL---AFRRAHN-----ATFGLIKSD 196 (295)
T ss_pred ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchh--hhhHH---HHHhhhc-----chhhccccc
Confidence 47899986543 26889999999999999999999999999999543 33211 1111000 000011223
Q ss_pred EEEEEEEeCCCC--C---CCccceEeecccccccc
Q psy169 235 FFFKAQYLEGDV--K---DKKLEYTWAAREELPKL 264 (280)
Q Consensus 235 fffka~~~~G~~--~---~e~~d~~WltkeEl~~~ 264 (280)
.||-|.+-.-.+ + .++..++|++.+|..+.
T Consensus 197 ~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~q 231 (295)
T KOG0648|consen 197 MFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQ 231 (295)
T ss_pred ceeEEEeeccccccchhHHHHHHHhcccHHHhhcc
Confidence 456665533222 1 24577799999865554
No 90
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=96.52 E-value=0.004 Score=51.13 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=38.0
Q ss_pred EEEEEEecC-----CCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceE
Q psy169 159 LVLLIKEKL-----GDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH 203 (280)
Q Consensus 159 LyLLVk~~~-----g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~ 203 (280)
++|||.-.. .+.|.|.+|.|.+..||..-.||.||..||+|+-++
T Consensus 19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 577776431 146889999999999999999999999999999876
No 91
>KOG4195|consensus
Probab=96.38 E-value=0.0035 Score=55.94 Aligned_cols=97 Identities=19% Similarity=0.366 Sum_probs=58.7
Q ss_pred EEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEE-------EecccceEEEEee-CCccccccccccc
Q psy169 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHAR-------FYGNAPCGFYKFK-YPKSLQAESNVVG 231 (280)
Q Consensus 160 yLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~-------~vg~~P~g~~~~~-yp~~~~~~~~~~g 231 (280)
++.||++ +.|.|.+|||-+++||-+-++++||+.||.=..++-- ++ .-+|...|+ |-..-|...+ --
T Consensus 141 ~vavkr~--d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~--~~~g~evYkGYvDDpRNTDN-aW 215 (275)
T KOG4195|consen 141 FVAVKRP--DNGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLL--SQCGMEVYKGYVDDPRNTDN-AW 215 (275)
T ss_pred EEEEecC--CCCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhCCeEEeeeecCCCCcccc-cc
Confidence 6677887 5689999999999999999999999999875543310 11 234444443 2221121111 11
Q ss_pred eEEEEEEEEEeCCCC----C----CCccceEeeccccc
Q psy169 232 AKLFFFKAQYLEGDV----K----DKKLEYTWAAREEL 261 (280)
Q Consensus 232 ~kvfffka~~~~G~~----~----~e~~d~~WltkeEl 261 (280)
..+--+..|.-.|.. . +.....+|+..+.=
T Consensus 216 mET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn~~ 253 (275)
T KOG4195|consen 216 METVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSN 253 (275)
T ss_pred eeEEEEeeeccccchhccccccccCcccceeEEEecCC
Confidence 233344555555533 1 24578999987643
No 92
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.31 E-value=0.0072 Score=52.16 Aligned_cols=118 Identities=18% Similarity=0.274 Sum_probs=65.8
Q ss_pred CCccchhhcCCCcE------EEEEEecCCC---CCceecC-CeecCCCCCHHHHHHHHHHHHhCCceEEE-EecccceEE
Q psy169 146 NNVKSMQRKLDKHL------VLLIKEKLGD---KSHWIMP-FGKRQEGETMRQTAERILAEKFNKTIHAR-FYGNAPCGF 214 (280)
Q Consensus 146 nd~~SL~R~l~~~L------yLLVk~~~g~---~~~W~FP-~G~ve~gEtl~qaAeRel~Ee~G~~i~v~-~vg~~P~g~ 214 (280)
.|.-.|.|+.+-.+ .||.+|.... .+.|.=- -|+=.+||+...||.|-|..|+|+....+ .....|-=+
T Consensus 27 ~d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~ 106 (185)
T COG1443 27 GDTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFR 106 (185)
T ss_pred cccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceE
Confidence 34444788876544 3555554321 2345310 02223899999999999999999977621 112233222
Q ss_pred EEeeCCccccccccccceEEEEEEEEEeCCCC-CCCccceEeeccccccccccH
Q psy169 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV-KDKKLEYTWAAREELPKLLLE 267 (280)
Q Consensus 215 ~~~~yp~~~~~~~~~~g~kvfffka~~~~G~~-~~e~~d~~WltkeEl~~~l~~ 267 (280)
|+-.++++.-.. .-.-|++++... .=++ .+++.+|+|++++++.+-+..
T Consensus 107 YrA~~~~~~~E~---Eic~V~~~~~~~-~~~~npdEV~~~~wv~~e~l~~~~~~ 156 (185)
T COG1443 107 YRAADPDGIVEN---EICPVLAARLDS-ALDPNPDEVMDYRWVSPEDLKEMVDA 156 (185)
T ss_pred EeccCCCCccee---eeeeEEEEeecC-CCCCChHHhhheeccCHHHHHHhhcC
Confidence 332233221111 012355555543 2223 358999999999999987554
No 93
>KOG3069|consensus
Probab=96.18 E-value=0.009 Score=53.79 Aligned_cols=97 Identities=19% Similarity=0.121 Sum_probs=59.8
Q ss_pred EEEEEecCC---CCCceecCCeecCCC-CCHHHHHHHHHHHHhCCceE-EEEecccceEEEEeeCCccccccccccceEE
Q psy169 160 VLLIKEKLG---DKSHWIMPFGKRQEG-ETMRQTAERILAEKFNKTIH-ARFYGNAPCGFYKFKYPKSLQAESNVVGAKL 234 (280)
Q Consensus 160 yLLVk~~~g---~~~~W~FP~G~ve~g-Etl~qaAeRel~Ee~G~~i~-v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kv 234 (280)
+||.||... -.|.=.||||+.+++ .+-.+||.||..||.|.+-+ +.++|..|--+... +.++.-..-
T Consensus 60 vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~--------~~~v~p~v~ 131 (246)
T KOG3069|consen 60 VLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRS--------GWSVFPVVG 131 (246)
T ss_pred EEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeecc--------CcccceeEE
Confidence 666776531 257889999999987 56677999999999999754 55567665322221 111011112
Q ss_pred EEEEEEE-eCCCC-CCCccceEeecccccccc
Q psy169 235 FFFKAQY-LEGDV-KDKKLEYTWAAREELPKL 264 (280)
Q Consensus 235 fffka~~-~~G~~-~~e~~d~~WltkeEl~~~ 264 (280)
|...-.+ -...+ .+++.+.-|++.+++-.-
T Consensus 132 ~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~ 163 (246)
T KOG3069|consen 132 FLSDKKILPSLRLNSGEVESAFWVPLTDLLLP 163 (246)
T ss_pred EEecccccccccCCchheeeeeeeeHHHHhhh
Confidence 2222222 12223 367899999998887654
No 94
>KOG3041|consensus
Probab=96.17 E-value=0.01 Score=52.14 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=39.7
Q ss_pred CcEEEEEEec--CCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccce
Q psy169 157 KHLVLLIKEK--LGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212 (280)
Q Consensus 157 ~~LyLLVk~~--~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~ 212 (280)
+..++|+|+= .-++---+||.|-+..||+..+||.|||+||+|..=++.. .+|.
T Consensus 87 ~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~--~s~~ 142 (225)
T KOG3041|consen 87 KPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDM--VSPT 142 (225)
T ss_pred cEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccceeee--cccc
Confidence 3356666653 1223348999999999999999999999999999744433 3554
No 95
>PLN02839 nudix hydrolase
Probab=95.50 E-value=0.026 Score=54.16 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=65.3
Q ss_pred cCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceEEEEEEEEEeCCCC----CCCc
Q psy169 175 MPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV----KDKK 250 (280)
Q Consensus 175 FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~kvfffka~~~~G~~----~~e~ 250 (280)
+-+|.+..||++.+|+.||+.||.|+....- -.-.|+|.+.|.+... . ......+|.|-..+-.+-. .+|+
T Consensus 239 ~VAGGi~aGesp~etliREa~EEAgLp~~l~-~~~~~~G~VsY~~~~~---~-g~~~evly~YDLeLP~df~P~~qDGEV 313 (372)
T PLN02839 239 LVAGGLPHGISCGENLVKECEEEAGISKAIA-DRAIAVGAVSYMDIDQ---Y-CFKRDVLFCYDLELPQDFVPKNQDGEV 313 (372)
T ss_pred ccccCccCCCCHHHHHHHHHHHHcCCCHHHH-hcceEeEEEEEEEEcC---C-ccccCEEEEeeeecCCccccCCCccce
Confidence 4568899999999999999999999964310 0235788888864221 1 1123467777666554432 2578
Q ss_pred cceEeeccccccccc------cHHHHHHHHhhhh
Q psy169 251 LEYTWAAREELPKLL------LEDYNKNISLFLM 278 (280)
Q Consensus 251 ~d~~WltkeEl~~~l------~~~y~~~v~~~L~ 278 (280)
.+|.+++.+|+.+.+ .+.-.-.|-+||.
T Consensus 314 e~F~Lm~v~EV~~~l~~~~~fKpn~aLViiDFLi 347 (372)
T PLN02839 314 ESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLF 347 (372)
T ss_pred eEEEEecHHHHHHHHHcCCCCCcccHHHHHHHHH
Confidence 999999999997553 3333444555553
No 96
>PRK10880 adenine DNA glycosylase; Provisional
Probab=93.97 E-value=0.2 Score=48.12 Aligned_cols=94 Identities=9% Similarity=0.002 Sum_probs=49.0
Q ss_pred CCcEEEEEEecCCC--CCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEeeCCccccccccccceE
Q psy169 156 DKHLVLLIKEKLGD--KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233 (280)
Q Consensus 156 ~~~LyLLVk~~~g~--~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~yp~~~~~~~~~~g~k 233 (280)
++..+||.||..++ +|.|+||+.. ..+ . .++..++.|..... . ..++.+++.|.. ....
T Consensus 240 ~~~~~~l~~r~~~gl~~gl~~fP~~~--~~~----~-~~~~~~~~~~~~~~-~---~~~~~~~H~fTH--------~~~~ 300 (350)
T PRK10880 240 HGDEVWLEQRPPSGLWGGLFCFPQFA--DEE----E-LRQWLAQRGIAADN-L---TQLTAFRHTFSH--------FHLD 300 (350)
T ss_pred ECCEEEEEECCccChhhccccCCCCc--chh----h-HHHHHHhcCCchhh-h---cccCceEEEEee--------EEEE
Confidence 34568888887554 7899999752 111 1 23344566654211 1 112233433321 1233
Q ss_pred EEEEEEEEeCCCCCCCccceEeeccccccccccHH
Q psy169 234 LFFFKAQYLEGDVKDKKLEYTWAAREELPKLLLED 268 (280)
Q Consensus 234 vfffka~~~~G~~~~e~~d~~WltkeEl~~~l~~~ 268 (280)
+..|.+............+..|++.+|+.++--|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~ 335 (350)
T PRK10880 301 IVPMWLPVSSFTGCMDEGNGLWYNLAQPPSVGLAA 335 (350)
T ss_pred EEEEEEEccccccccCCcCCeEechHHhcccCCcH
Confidence 44555554332221123456799999999984443
No 97
>KOG2937|consensus
Probab=92.01 E-value=0.046 Score=51.55 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred CccchhcCCccchhhcCCCcEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEee
Q psy169 139 ITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218 (280)
Q Consensus 139 ~T~aD~~nd~~SL~R~l~~~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~ 218 (280)
++.|+..+- ++.| +|||+.-.+ ..|.||.|++...|+-..||.||+.|++|-+..-.+.-| ++
T Consensus 84 v~ga~ild~--~~sr------~llv~g~qa--~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~------e~- 146 (348)
T KOG2937|consen 84 VRGAIILDE--KRSR------CLLVKGWQA--SSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDN------EG- 146 (348)
T ss_pred CchHhhhhh--hhhh------hheeeceec--ccccccCccccccchhhhcchhcccchhhcCHHHHhccc------cC-
Confidence 466775443 2333 778876533 359999999999999999999999999999875332211 11
Q ss_pred CCccccccccccceEEEEEEE--EEe----CCCCCCCccceEeeccccccc
Q psy169 219 YPKSLQAESNVVGAKLFFFKA--QYL----EGDVKDKKLEYTWAAREELPK 263 (280)
Q Consensus 219 yp~~~~~~~~~~g~kvfffka--~~~----~G~~~~e~~d~~WltkeEl~~ 263 (280)
-+. ++.|.-++.|-. .-. .+.+.-+.+...|.-.+++..
T Consensus 147 Ie~------nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~ 191 (348)
T KOG2937|consen 147 IET------NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVP 191 (348)
T ss_pred ccc------chhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcc
Confidence 011 123334442222 111 122224678999999998843
No 98
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=90.55 E-value=1.7 Score=38.12 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=34.8
Q ss_pred cEEEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCCc---eEEEEecccceEEEE
Q psy169 158 HLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT---IHARFYGNAPCGFYK 216 (280)
Q Consensus 158 ~LyLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~~---i~v~~vg~~P~g~~~ 216 (280)
.-+||.|.. ...|.+|||.+..||.-.+...|-|.+.+|.. ...|.||..-.-++.
T Consensus 58 PHvLLLq~~---~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l~~WwR 116 (188)
T PF13869_consen 58 PHVLLLQIG---NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECLGTWWR 116 (188)
T ss_dssp EEEEEEEET---TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEEEEEEE
T ss_pred cEEEEEecc---CccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEEEEEeC
Confidence 346666654 34899999999999999999999999999985 456777755444444
No 99
>KOG0142|consensus
Probab=85.82 E-value=0.64 Score=41.19 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhCCceEEEE-ecccceEEEEeeCCccccccccccce----EEEEEEEEEeCCCC-CCCccceEee
Q psy169 183 GETMRQTAERILAEKFNKTIHARF-YGNAPCGFYKFKYPKSLQAESNVVGA----KLFFFKAQYLEGDV-KDKKLEYTWA 256 (280)
Q Consensus 183 gEtl~qaAeRel~Ee~G~~i~v~~-vg~~P~g~~~~~yp~~~~~~~~~~g~----kvfffka~~~~G~~-~~e~~d~~Wl 256 (280)
+...+.||+|-|.-|+|+...... --...++-+.|+-|.. + .-|. .+.|++.... =.+ ..++++++||
T Consensus 102 ~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sd---g--~wGEhEiDYiL~~~~~~~-~nPnpnEv~e~ryv 175 (225)
T KOG0142|consen 102 ALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSD---G--IWGEHEIDYILFLVKDVT-LNPNPNEVSEIRYV 175 (225)
T ss_pred hHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCC---C--CcccceeeEEEEEeccCC-CCCChhhhhHhhee
Confidence 357899999999999999654211 0122345556653332 1 1232 2333333111 111 2578999999
Q ss_pred ccccccccccH
Q psy169 257 AREELPKLLLE 267 (280)
Q Consensus 257 tkeEl~~~l~~ 267 (280)
+++||++.+..
T Consensus 176 s~eelkel~~~ 186 (225)
T KOG0142|consen 176 SREELKELVAK 186 (225)
T ss_pred cHHHHHHHHhc
Confidence 99999998543
No 100
>PRK13910 DNA glycosylase MutY; Provisional
Probab=80.39 E-value=5.6 Score=37.23 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=20.9
Q ss_pred eEEEEEEEEEeCCCCCCCccceEeeccccccccccHH
Q psy169 232 AKLFFFKAQYLEGDVKDKKLEYTWAAREELPKLLLED 268 (280)
Q Consensus 232 ~kvfffka~~~~G~~~~e~~d~~WltkeEl~~~l~~~ 268 (280)
..+.+|.+.+... ..++.|++.+++.++--|.
T Consensus 241 ~~~~~~~~~~~~~-----~~~~~w~~~~~~~~~~~p~ 272 (289)
T PRK13910 241 LNLNLYLAAIKDL-----KNPIRFYSLKDLETLPISS 272 (289)
T ss_pred EEEEEEEEEeccC-----CccceEecHHHhhhcCCcH
Confidence 3455666655321 2467999999999984443
No 101
>KOG1689|consensus
Probab=71.20 E-value=6.2 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=31.8
Q ss_pred EEEEEecCCCCCceecCCeecCCCCCHHHHHHHHHHHHhCC
Q psy169 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNK 200 (280)
Q Consensus 160 yLLVk~~~g~~~~W~FP~G~ve~gEtl~qaAeRel~Ee~G~ 200 (280)
+||.|-. .-...+|||.+++||+-.....|.+.|.+|.
T Consensus 86 vLLLQig---~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr 123 (221)
T KOG1689|consen 86 VLLLQIG---NTFFKLPGGRLRPGEDEADGLKRLLTESLGR 123 (221)
T ss_pred EEEEeeC---CEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence 5555533 3479999999999999999999999999993
No 102
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=62.68 E-value=11 Score=29.73 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=29.5
Q ss_pred EEEEeeeCCcccCCCCHHHHHHHHHHHHHHHhhccCChHHH
Q psy169 49 SAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHEL 89 (280)
Q Consensus 49 ~av~L~R~Pvit~~~~~~E~~~~~~~~~~e~e~sl~s~~e~ 89 (280)
.++-+..+|--.|++||+|.-|..+.+.+.- +.+.+..|+
T Consensus 106 ~~~~~~~~P~~sPdLNpiE~~w~~lk~~~~~-~~~~~~~~L 145 (146)
T PF13358_consen 106 RGIELLFLPPYSPDLNPIENVWGYLKRRIRR-RRFSSIEEL 145 (146)
T ss_pred cccccccccCcCCccCHHHHHHHHHHHHHHh-cCCCChHHh
Confidence 5788999999999999999777777665543 444444443
No 103
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=51.95 E-value=29 Score=33.35 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.4
Q ss_pred ceEeeccccccccccH
Q psy169 252 EYTWAAREELPKLLLE 267 (280)
Q Consensus 252 d~~WltkeEl~~~l~~ 267 (280)
++.|++.+++..+--+
T Consensus 315 ~~~w~~~~~~~~~~l~ 330 (342)
T COG1194 315 DGRWYNLSDLESIGLP 330 (342)
T ss_pred Cceecccccccccccc
Confidence 8999999999987333
No 104
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=50.90 E-value=19 Score=33.40 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=17.4
Q ss_pred CcEEEEEEecCCC--CCceecCCee
Q psy169 157 KHLVLLIKEKLGD--KSHWIMPFGK 179 (280)
Q Consensus 157 ~~LyLLVk~~~g~--~~~W~FP~G~ 179 (280)
+..+||.|+..++ +|.|+||+..
T Consensus 238 ~~~~~~~~r~~~~~~~gl~~~p~~~ 262 (275)
T TIGR01084 238 DGEVLLEQRPEKGLWGGLYCFPQFE 262 (275)
T ss_pred CCeEEEEeCCCCchhhccccCCCCC
Confidence 4568888887544 7899999853
No 105
>PF14443 DBC1: DBC1
Probab=47.43 E-value=72 Score=26.28 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCceecC--CeecCC-CCCHHHHHHHHHHHHhCCceE
Q psy169 170 KSHWIMP--FGKRQE-GETMRQTAERILAEKFNKTIH 203 (280)
Q Consensus 170 ~~~W~FP--~G~ve~-gEtl~qaAeRel~Ee~G~~i~ 203 (280)
+|.|.== |+.-.. -.+|-.||+|-+++.+|+++.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS 59 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLS 59 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchh
Confidence 5677633 333333 478999999999999999875
No 106
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=43.27 E-value=49 Score=28.65 Aligned_cols=102 Identities=27% Similarity=0.407 Sum_probs=52.8
Q ss_pred EEEEEEecCCC-----CCceecC-CeecCCC-------CCHHHHHHHHHHHHhCCc---eE-EEEecccceEEEEeeCCc
Q psy169 159 LVLLIKEKLGD-----KSHWIMP-FGKRQEG-------ETMRQTAERILAEKFNKT---IH-ARFYGNAPCGFYKFKYPK 221 (280)
Q Consensus 159 LyLLVk~~~g~-----~~~W~FP-~G~ve~g-------Etl~qaAeRel~Ee~G~~---i~-v~~vg~~P~g~~~~~yp~ 221 (280)
-+||-+|-.|+ .+...+- ||++..+ |-|+--++|||.||.+++ .+ ..+ +|.+...
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-----lGlINdd--- 144 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-----LGLINDD--- 144 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-----eeeecCC---
Confidence 47777775432 1223332 5566544 335556899999999986 22 222 2333321
Q ss_pred cccccccccceEEEE---EEEEEeCCCCC---CCccceEeecccccccc-ccHHHHHHHH
Q psy169 222 SLQAESNVVGAKLFF---FKAQYLEGDVK---DKKLEYTWAAREELPKL-LLEDYNKNIS 274 (280)
Q Consensus 222 ~~~~~~~~~g~kvff---fka~~~~G~~~---~e~~d~~WltkeEl~~~-l~~~y~~~v~ 274 (280)
.+-+| ||+. |+.+.-..++. ...-.++|+..+||.++ =.-+-|.++.
T Consensus 145 -----~neVg-kVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~y~~~EtWS~~~ 198 (203)
T COG4112 145 -----TNEVG-KVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKFYGVMETWSKIS 198 (203)
T ss_pred -----Ccccc-eEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHHhhhhHHHHHHH
Confidence 11133 2322 22222222221 12468999999999993 2235565554
No 107
>KOG4432|consensus
Probab=34.61 E-value=56 Score=30.96 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=32.3
Q ss_pred eecCCeecCCCCCHHHHHHHHHHHHhCCceEEEEecccceEEEEee
Q psy169 173 WIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218 (280)
Q Consensus 173 W~FP~G~ve~gEtl~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~~ 218 (280)
-++=+|.+...-|+++.|..|+.||||..+... .-+++|.|.
T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d----~l~hv~~~~ 122 (405)
T KOG4432|consen 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPD----DLIHVITFV 122 (405)
T ss_pred eeeeccccccccCHHHHhHHHHHHHhCCcCChh----HceEEEEEE
Confidence 567778888899999999999999999877642 234455553
No 108
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=25.48 E-value=1.8e+02 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhCCceEEEEecccceEEEEe
Q psy169 186 MRQTAERILAEKFNKTIHARFYGNAPCGFYKF 217 (280)
Q Consensus 186 l~qaAeRel~Ee~G~~i~v~~vg~~P~g~~~~ 217 (280)
+.-.|||++...+|-..+ .|+|.|..
T Consensus 2 ~~v~aER~fl~~l~ggC~------~Piga~a~ 27 (74)
T PF03900_consen 2 IEVEAERAFLKELGGGCH------SPIGAYAK 27 (74)
T ss_dssp HHHHHHHHHHHHCT--TT------SSEEEEEE
T ss_pred hhHHHHHHHHHHhCCCCC------CceeeEEE
Confidence 356899999999998764 79998875
No 109
>KOG2457|consensus
Probab=20.48 E-value=68 Score=31.56 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=31.2
Q ss_pred CcEEEEEEecCCC--CCceecCCeec-CCCCCHHHHHH--HHHHHHhCC
Q psy169 157 KHLVLLIKEKLGD--KSHWIMPFGKR-QEGETMRQTAE--RILAEKFNK 200 (280)
Q Consensus 157 ~~LyLLVk~~~g~--~~~W~FP~G~v-e~gEtl~qaAe--Rel~Ee~G~ 200 (280)
++.+||+++..-+ .|.|.||.... +.+|.++--|. |-+.-.++.
T Consensus 386 ~~~ilv~~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~ 434 (555)
T KOG2457|consen 386 RNAILVYLRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLV 434 (555)
T ss_pred cceeEEEeccchhHHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcc
Confidence 5678999887433 67899999998 88887765442 335555554
No 110
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.42 E-value=98 Score=22.12 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=15.0
Q ss_pred ceecCCeecCCCCCHHHHHHHHHHHH
Q psy169 172 HWIMPFGKRQEGETMRQTAERILAEK 197 (280)
Q Consensus 172 ~W~FP~G~ve~gEtl~qaAeRel~Ee 197 (280)
.|-||+|.+-.+- -.|+|+.++.
T Consensus 23 GWl~Pgg~vi~NP---lkAqR~AE~~ 45 (60)
T PF07026_consen 23 GWLMPGGKVITNP---LKAQRLAEEL 45 (60)
T ss_pred eeecCCCeeEcCH---HHHHHHHHHH
Confidence 4999999997663 3444444443
Done!