RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy169
(280 letters)
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 48.0 bits (114), Expect = 4e-07
Identities = 18/118 (15%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
LL K + +W +P G+ Q+ ET+ ER+ + + G ++
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG--LRLPITAGQFYGVWQHF 89
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK---DKKLEYTWAAREELPKL-LLEDYNKN 272
Y + + F+ + E ++ ++ +Y W + L + ++
Sbjct: 90 YDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRA 147
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 46.6 bits (111), Expect = 8e-07
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 18/120 (15%)
Query: 160 VLLIKEKLGDKSH---WIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYK 216
LL++ +++ W +P GK E++++ R + E+ T+ G
Sbjct: 22 FLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVP----GDIAGQVN 77
Query: 217 FKYPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKL-LLEDYNKNI 273
F+ E V+ F Y+ DVK + +EY+W + E++ + L Y ++
Sbjct: 78 FELT-----EKKVI---AIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETLPAYFRDF 129
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 45.7 bits (108), Expect = 2e-06
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFY-GNAPCGF 214
+ ++ D W G ++ E + +TA+R E+ N + + Y ++
Sbjct: 18 ANYQFGVLHRT--DADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASI 75
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLEDYNK 271
F + + + VV F V E W + E +LL D NK
Sbjct: 76 PNFHFSFN---KPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESAIQLLEWDSNK 131
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 3e-06
Identities = 43/298 (14%), Positives = 80/298 (26%), Gaps = 92/298 (30%)
Query: 44 KWDLMSAVCLERKPLITRDFN-------------EIEKKVQLLMNELELENSMKSDH--- 87
K + VCL K DF + + +Q L+ +++ + +SDH
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 88 -ELRC--IADQIR---AEKMKDKSLNVDMIDDALQQTGQDFVDMGLNELKKFTPASRI-- 139
+LR I ++R K + L V + + Q+ F + +I
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLV--LLNV-----QN-----AKAWNAFNLSCKILL 270
Query: 140 -TK----ADKENNVKSMQRKLDKH---------LVLLIK------EKLGDKSHWIMPFGK 179
T+ D + + LD H LL+K + L + P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 180 RQEGETMRQTAER------ILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAK 233
E++R + +K I + P +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIES---------SLNVLEPAEYRK-------- 373
Query: 234 LFFFKAQYLEGDVK--DKKLEYTWAAREE----------LPKLLLEDYNKNISLFLMD 279
F + L W + L+E K ++ +
Sbjct: 374 -MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Score = 44.8 bits (105), Expect = 2e-05
Identities = 37/275 (13%), Positives = 88/275 (32%), Gaps = 86/275 (31%)
Query: 62 DFNEIEKKVQLLMNELELENSMKSDHELRC------------------------------ 91
D +++ + ++++ E+++ + S +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 92 IADQIRAEKMKDKSLNVDMID---DALQQTGQDFVDMGLNELKKFTPASRITKA----DK 144
+ I+ E+ + S+ M D L Q F ++ L+ + ++ +A
Sbjct: 94 LMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRP 149
Query: 145 ENNV---------KSMQRKLDKHLVLL------IKEKLGDKSHWIMPFGKRQEGETMRQT 189
NV K+ + L ++ K+ K W+ ET+ +
Sbjct: 150 AKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEM 201
Query: 190 AERILAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL--FFFKAQYLEG--- 244
++ L + + +R + +++ + + A+L Y
Sbjct: 202 LQK-LLYQIDPNWTSR-----------SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 245 --DVKDKKLEYTWAAREELPKLLLEDYNKNISLFL 277
+V++ K W A K+LL K ++ FL
Sbjct: 250 LLNVQNAK---AWNAFNLSCKILLTTRFKQVTDFL 281
Score = 34.8 bits (79), Expect = 0.031
Identities = 39/200 (19%), Positives = 66/200 (33%), Gaps = 56/200 (28%)
Query: 45 W------DLMSAVC-LERKPLITRDFNE---------IEKKVQLLMNELELENSM----- 83
W D+M V L + L+ + E +E KV+ L NE L S+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHYN 454
Query: 84 -----KSDHELRCIADQ-----I--------RAEK---MKDKSLNVDMIDDALQQTGQDF 122
SD + DQ I E+ + L+ ++ ++ +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 123 VDMG-----LNELKKFTPASRITKADKENN--VKSMQRKLDKHLVLLIKEKLGDKSHWIM 175
G L +LK + P I D + V ++ L K LI K D ++
Sbjct: 515 NASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLPKIEENLICSKYTD----LL 568
Query: 176 PFGKRQEGETMRQTAERILA 195
E E + + A + +
Sbjct: 569 RIALMAEDEAIFEEAHKQVQ 588
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 43.2 bits (102), Expect = 2e-05
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 14/112 (12%)
Query: 156 DKHLVLLIKEKLGDKSH--WIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCG 213
+ V++ + + P G + E ++ R + E+ TI G
Sbjct: 19 ETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL----VG 74
Query: 214 FYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREELPKL 264
+ + + +KA G ++ + E +W ++++P L
Sbjct: 75 IKNWPLDTGGRYI-------VICYKATEFSGTLQSSEEGEVSWVQKDQIPNL 119
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 42.5 bits (100), Expect = 3e-05
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 23/117 (19%)
Query: 160 VLLIKEKLG-----DKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCG 213
+LL++EK W +P G ++GE + A R E +T + R G
Sbjct: 27 ILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACE---ETGLRVRPVK--FLG 81
Query: 214 FYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK-----LEYTWAAREELPKLL 265
Y ++P + + A+ G E ++ +RE+ +L
Sbjct: 82 AYLGRFPDGVLILR-------HVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLY 131
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 42.3 bits (99), Expect = 7e-05
Identities = 20/127 (15%), Positives = 35/127 (27%), Gaps = 16/127 (12%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
+L+K S W P GK + E+ A R + E+ +R N
Sbjct: 112 SMQQCVLVKGW-KASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMT 170
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK----LEYTWAAREELPKLLLEDYNK 271
+L+ L+ + + + W +LP
Sbjct: 171 IRGQNV-----------RLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 219
Query: 272 NISLFLM 278
+ F M
Sbjct: 220 MKNKFYM 226
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 40.9 bits (96), Expect = 8e-05
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 15/119 (12%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCGFYKFK 218
LL++ G HW P G + GE +TA R E + I A +
Sbjct: 31 FLLLQASDG-IHHWTPPKGHVEPGEDDLETALRATQE---EAGIEAGQLTIIEGFKRELN 86
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK----LEYTWAAREELPKLLLEDYNKNI 273
Y + ++ A+ + DV+ + Y W EE +L K
Sbjct: 87 YVA------RNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAA 139
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 41.5 bits (97), Expect = 9e-05
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 25/119 (21%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAE------KFNKTIHARFYGN 209
+L+++++ K+ W P G + E + TA R + E +F + R
Sbjct: 37 STRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHT 96
Query: 210 APCGFYKFKYPKSLQAESNVVGAKLFF-FKAQYLEGDVKDKK---LEYTWAAREELPKL 264
P F K + ++ + + + + L W +L K
Sbjct: 97 NPGAFGK---------------SDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAKT 140
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 40.3 bits (95), Expect = 1e-04
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAER-ILAEKFNKT-IHARFYGNAPCGFYKF 217
VLLIK W P G + GE +TA R + E T + Y +
Sbjct: 17 VLLIKTPSN---VWSFPKGNIEPGEKPEETAVREVWEE----TGVKGEILDYIGEIHYWY 69
Query: 218 KYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLEDYNKNI 273
+ + ++ +Y EG+ + + + +E KLL +K I
Sbjct: 70 TLKG------ERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEI 121
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 39.2 bits (92), Expect = 2e-04
Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 17/120 (14%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCGF 214
K VLL+++++G W+ P G + GE++ + A R + E +T + A
Sbjct: 12 AKREVLLLRDRMGF---WVFPKGHPEPGESLEEAAVREVWE---ETGVRAEVLLPLYPTR 65
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK-LEYTWAAREELPKLLLEDYNKNI 273
Y V ++ +F + ++ W + EE LL + +
Sbjct: 66 YVNP---------KGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGL 116
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 38.9 bits (91), Expect = 4e-04
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
+LLIK K + W +P GK E + + R + E+ I +
Sbjct: 42 ILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELG--IALERATLLCVVDHIDA 99
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK----DKKLEYTWAAREELPKLLLED 268
+ V + A G+ + D+ W A ++LP+ L
Sbjct: 100 ANG-----EHWV---APVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPLTHA 145
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 39.1 bits (91), Expect = 4e-04
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 17/118 (14%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAE---------KFNKTIHARFYGNA 210
VLL+K K +I P G + ET + +R E F I
Sbjct: 14 VLLVKHK--RLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVER 71
Query: 211 PCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKKLEYTWAAREELPKLLLED 268
P + E+++ + + + GD+K+ + W E+ ++
Sbjct: 72 PMPLVILEEVVKYPEETHIH--FDLIYLVKRVGGDLKNGE----WIDVREIDRIETFP 123
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 38.3 bits (90), Expect = 6e-04
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAP 211
RKL + L+ + HW P G GE Q A R E + I
Sbjct: 12 RKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKE---EANITKEQLTIHE 68
Query: 212 CGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK---LEYTWAAREELPKLL 265
Y E+ + ++ A+ D + W E+ K+
Sbjct: 69 DCHETLFY------EAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIA 119
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 38.2 bits (89), Expect = 7e-04
Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIH-ARFYGNAPCGF 214
++ +++ + + +P G+ + ET + R + E+ ++ + G A F
Sbjct: 28 PENNTMVLVQAPNGA--YFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYF 85
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYNK 271
Y + +F+ A + ++ W A EE +LL ++
Sbjct: 86 YSNHRQTAYYNP-------GYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHR 137
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 38.2 bits (89), Expect = 7e-04
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCGFYKFK 218
L+++E + K+ W P G + ET+ + A R L E +T I A+ +++
Sbjct: 18 FLVVEETINGKALWNQPAGHLEADETLVEAAARELWE---ETGISAQPQH--FIRMHQWI 72
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKL 264
P + LF + + + W + EE+ +
Sbjct: 73 AP-----DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQA 115
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 37.8 bits (88), Expect = 0.001
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHA-RFYGNAPCGF 214
++ +L +W +P G + GET + R + E+ + + G
Sbjct: 31 EQGEILFQYP---GGEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQKGVFGGKE 87
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVK---DKKLEYTWAAREELPKLLL 266
Y++ Y + E VV F+ + G+++ + L+ + + E P L L
Sbjct: 88 YRYTYSNGDEVEYIVV-----VFECEVTSGELRSIDGESLKLQYFSLSEKPPLAL 137
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 37.4 bits (87), Expect = 0.001
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 24/115 (20%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCGFYKF 217
VLLI+E + W +P G+ + GET+ + +R + E + +H
Sbjct: 34 VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKE---EAGLHCEPET--LLSVE-- 86
Query: 218 KYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK------LEYTWAAREELPKLLL 266
+ + V F F A+ G +K K L+ W R LP L
Sbjct: 87 ------ERGPSWV---RFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLR 132
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 37.4 bits (87), Expect = 0.001
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 21/123 (17%)
Query: 143 DKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202
D++N V QR K L L W P GK ++GET + R L E+ +
Sbjct: 38 DQDNRVLLTQRPEGKSLAGL----------WEFPGGKVEQGETPEASLIRELEEELG--V 85
Query: 203 HARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREEL 261
H + P F Y + + + +G + + W +L
Sbjct: 86 HVQADNLFPLTFASHGYET--------FHLLMPLYFCSHYKGVAQGREGQNLKWIFINDL 137
Query: 262 PKL 264
K
Sbjct: 138 DKY 140
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 37.3 bits (87), Expect = 0.002
Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 143 DKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202
D + V QR K L L W P GK + GET R LAE+
Sbjct: 17 DPDGRVLLAQRPPGKSLAGL----------WEFPGGKLEPGETPEAALVRELAEELGVDT 66
Query: 203 HARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREEL 261
A AP F Y + + + G + W E L
Sbjct: 67 RASCL--APLAFASHSYDT--------FHLLMPLYACRSWRGRATAREGQTLAWVRAERL 116
Query: 262 PKL 264
+
Sbjct: 117 REY 119
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 37.0 bits (86), Expect = 0.003
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAER-ILAEKFNKT-IHARFYGNAPCGFYKF 217
VLL+++ + W+ P GK + GE++ +T +R E T I + G +
Sbjct: 17 VLLLQKP--RRGWWVAPGGKMEAGESILETVKREYWEE----TGITVKNPE--LKGIFSM 68
Query: 218 KYPKSLQAESNVVGAKLFFFKAQYLEGD--VKDKKLEYTWAAREELPKL 264
+ S + LF FKA EG+ + + + W ++E+ +L
Sbjct: 69 VIFDEGKIVSEWM---LFTFKATEHEGEMLKQSPEGKLEWKKKDEVLEL 114
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 36.4 bits (84), Expect = 0.003
Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 28/127 (22%)
Query: 160 VLLIKE-KLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKT-IHARFYGNAPCGFYKF 217
LL++E G P G + GE++ Q R + E +T G Y +
Sbjct: 21 YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLE---ETGHSFLPE--VLTGIYHW 75
Query: 218 KYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK----LEYTWAAREELPKLL-------- 265
SN F F Q + D K + W + +E+
Sbjct: 76 TCA------SNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLV 129
Query: 266 ---LEDY 269
+EDY
Sbjct: 130 MQCIEDY 136
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 35.8 bits (82), Expect = 0.007
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 16/119 (13%)
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212
R + VLL+ WI+P G + E A R + E+ A G
Sbjct: 49 RSESEEEVLLVSSS-RHPDRWIVPGGGMEPEEEPSVAAVREVCEE------AGVKGTLGR 101
Query: 213 GFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKKLEYT---WAAREELPKLLLED 268
F+ + ++ + D +D W E+ K+L
Sbjct: 102 LVGIFENQERKH------RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVLQYH 154
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 36.1 bits (83), Expect = 0.008
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 3/112 (2%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
+L+++ K K W +P G + ET+ Q R L E+ N + A F
Sbjct: 221 ILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFD 280
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLED 268
YP + LF F ++ D + W + K + +
Sbjct: 281 YPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNICDR 332
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 35.0 bits (81), Expect = 0.009
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 16/115 (13%)
Query: 156 DKHLVLLIKEKLGD-KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGF 214
+ VL+ + K+ P G + GE A R + E+ + CG
Sbjct: 21 ETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETG--LRLSGVT--FCGT 76
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVK---DKKLEYTWAAREELPKLLL 266
++ ++A G +K + +L W L +
Sbjct: 77 CEWFDDD------RQHRKLGLLYRASNFTGTLKASAEGQLS--WLPITALTRENS 123
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 35.2 bits (80), Expect = 0.017
Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 7/132 (5%)
Query: 134 TPASRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERI 193
S I + KS Q +LD V ++ D W P GK ++ ET R A R
Sbjct: 14 KAGSDIANDPAIASSKSAQEQLDSIEVCIVHRPKYDD--WSWPKGKLEQNETHRHAAVRE 71
Query: 194 LAEKFNKTIHARFYGNAPCGFYKFKYPKSLQAESNVVGAKL---FFFKAQYLEGDVKDKK 250
+ E+ + Y S+ A ++ AQ + D +
Sbjct: 72 IGEETG--SPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHL 129
Query: 251 LEYTWAAREELP 262
L+
Sbjct: 130 LDAFGPVHRADV 141
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 33.9 bits (78), Expect = 0.023
Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 21/122 (17%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKY 219
VLL+K+K+ ++ W +P G+ + GET+ + R + E+ + +
Sbjct: 36 VLLVKQKVANR-DWSLPGGRVENGETLEEAMIREMREETGLEVKIK----KLLYVCDKPD 90
Query: 220 PKSLQAESNVVGAKLFFFKAQYLEGDVK--------DKKLEYTWAAREELPKLLLEDYNK 271
F + +EG++ + + EL +
Sbjct: 91 ASPSL--------LHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINELSYYGFSETFI 142
Query: 272 NI 273
N+
Sbjct: 143 NL 144
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 34.6 bits (79), Expect = 0.027
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEK 197
VLLI+ K ++ W +P G E+ + R E+
Sbjct: 58 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEE 96
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 33.9 bits (78), Expect = 0.030
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 17/126 (13%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAER-ILAEKFNKT-IHARFYGNAPCGFYK 216
VLL +K G W GK QEGET+ A R + E + + G
Sbjct: 38 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEE----SGLTVDAL--HKVGQIV 91
Query: 217 FKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREELPKL-LLEDYNKNIS 274
F++ + + F ++G + ++ W +++P + D +
Sbjct: 92 FEFVGEPELM------DVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFP 145
Query: 275 LFLMDE 280
L L +
Sbjct: 146 LLLQKK 151
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 33.8 bits (77), Expect = 0.035
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 160 VLLIKEKLGD-KSHWIMPFGKRQEGETMRQTAERILAEKFN 199
+LL+K W + G Q+ E++ A+R+LAE
Sbjct: 30 LLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTG 70
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 34.1 bits (77), Expect = 0.037
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 137 SRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAE 196
+R + N + + IK K D W +P G GE + T +R E
Sbjct: 118 TRWKRDSSGNKIMHPVSGKHILQFVAIKRK--DCGEWAIPGGMVDPGEKISATLKREFGE 175
Query: 197 KFNKTI 202
+ ++
Sbjct: 176 EALNSL 181
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 33.3 bits (76), Expect = 0.038
Identities = 15/118 (12%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAE----KFNKTIHARFYGNAPCGFY 215
+LL++ + W P GK + E R + E I +
Sbjct: 19 ILLVQGT--ESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGK 76
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLEDYNK 271
+K L ++ + + + W +++ K + + K
Sbjct: 77 NYKI-------------FLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYKSNIK 121
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 33.1 bits (75), Expect = 0.053
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 9/119 (7%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
+++ L+I + + W G + + A + L E+ +
Sbjct: 56 ERNKFLMIHHNIYNS--WAWTGGHSDNEKDQLKVAIKELKEETGVKNP-TPLLDKAFALD 112
Query: 216 KFKYPKSLQAESNVVGAK----LFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLED 268
++ V + + E + + W E+ K E
Sbjct: 113 VLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPFNEISKYCSEP 171
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 33.8 bits (77), Expect = 0.055
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
VL+++ + +P G ++ ET+ + R L E+ + + + F
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD 275
Query: 219 YP 220
P
Sbjct: 276 AP 277
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 32.8 bits (75), Expect = 0.077
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
VLL K + + W +P G + ET+ Q A R E+ N + R Y
Sbjct: 53 VLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIREL----YAVYSLP 108
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELP 262
+ + F+A+ L+ D LE +E+P
Sbjct: 109 HISQVY----------MLFRAKLLDLDFFPGIESLEVRLFGEQEIP 144
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 32.2 bits (73), Expect = 0.092
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 6/121 (4%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC-GF 214
D VL+++ + D W G +EGET Q A R + E+ + A C
Sbjct: 20 DTKRVLMLQ-RRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRT 78
Query: 215 YKFKYPKSL--QAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLEDYN 270
+F+ L + V +F L Y W L N
Sbjct: 79 VEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSN 138
Query: 271 K 271
+
Sbjct: 139 R 139
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 32.7 bits (74), Expect = 0.092
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 160 VLLIKEKLGD-KSHWIMPFG--KRQEGETMRQTAERILAEKFN 199
VLL++ W +P G E++ QT R LAEK
Sbjct: 39 VLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTA 81
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 32.4 bits (74), Expect = 0.10
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 160 VLLIK--------EKLGDKSHWIMPFGKRQEGETMRQTAERILAEK 197
+LLIK + + W +P G E E+ Q AER L E+
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEE 93
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 31.9 bits (73), Expect = 0.10
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEK 197
+ ++LI+ K +P G + GE + + A R + E+
Sbjct: 23 NFKGIVLIERK-YPPVGLALPGGFVEVGERVEEAAAREMREE 63
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 32.2 bits (73), Expect = 0.11
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 23/116 (19%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKY 219
VL+ + G + +P GK GE Q R + E+ I++ Y + +
Sbjct: 29 VLVTASRGGR---YNLPGGKANRGELRSQALIREIREETGLRINSMLY----LFDHITPF 81
Query: 220 PKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYNKNI 273
K++ A +G K ++ + + L + + I
Sbjct: 82 NAH----------KVYLCIA---QGQPKPQNEIERIALVSSPDTDMDLFVE-GRAI 123
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 31.8 bits (73), Expect = 0.11
Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 25/124 (20%)
Query: 143 DKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202
+++ + QR L W GK + E+ RQ R L E+
Sbjct: 17 ERDGKILLAQRPAQSDQAGL----------WEFAGGKVEPDESQRQALVRELREELGIEA 66
Query: 203 HARFYGNAPCGFYKFKYP-KSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREE 260
++ + + + L + G ++ W + EE
Sbjct: 67 TV----GEYVASHQREVSGRII---------HLHAWHVPDFHGTLQAHEHQALVWCSPEE 113
Query: 261 LPKL 264
+
Sbjct: 114 ALQY 117
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 30.3 bits (69), Expect = 0.38
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 23/123 (18%)
Query: 143 DKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202
K+ + QR + L W P GK + GET + R L E+
Sbjct: 30 RKDGKILVGQRPENNSLAGQ----------WEFPGGKIENGETPEEALARELNEELGIEA 79
Query: 203 HARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREEL 261
Y VG + F++ Y +G+ + K + W EEL
Sbjct: 80 EV----GELKLACTHSYGD--------VGILILFYEILYWKGEPRAKHHMMLEWIHPEEL 127
Query: 262 PKL 264
Sbjct: 128 KHR 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.49
Identities = 34/174 (19%), Positives = 52/174 (29%), Gaps = 62/174 (35%)
Query: 2 AGHLKQDLKLTSCLIKLLRNFNTASAVNPLRQELTTTSGSREKWDLMSAVCLERKPLITR 61
+G Q L L LR A A + L Q SR S ERK +
Sbjct: 380 SGP-PQSLYG---LNLTLRK---AKAPSGLDQ-------SRIP---FS----ERKLKFSN 418
Query: 62 DFNEI---------EKKVQLLMNELELENSMKSDHELRC----IADQ--IRAEKMKDKSL 106
F + L+ +L N + +++ D +R S+
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL---SGSI 475
Query: 107 N---VDMI-------DDALQQTGQDFVDMGLNELKKFTP--ASRI---TKADKE 145
+ VD I + Q +D G P AS + T +K+
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILDFG--------PGGASGLGVLTHRNKD 521
Score = 28.9 bits (64), Expect = 2.3
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 27/78 (34%)
Query: 190 AERILAEKFNKTIH-------------------ARFYGNAPCGFYKFKY-PKSLQAESNV 229
A + L E+FNK + +F G + P + V
Sbjct: 30 ASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQV 83
Query: 230 VGAKLFFFKAQYLEG-DV 246
+ L F+ YLEG D+
Sbjct: 84 LNLCLTEFENCYLEGNDI 101
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 29.6 bits (66), Expect = 0.72
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKY 219
VLL K + G + E + R E+ ++ Y K
Sbjct: 19 VLLHLHK--KAKKMLPLGGHIEVNELPEEACIREAKEEAG--LNVTLYNPIDINLKKSCD 74
Query: 220 PKSLQAESNVVGAKL-----------FFFKAQYLEGDVK---DKKLEYTWAAREELPKLL 265
+ N + L F + A + + W ++E+L
Sbjct: 75 LSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKILKWYSKEDLKNAH 134
Query: 266 LED 268
Sbjct: 135 NIQ 137
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 29.0 bits (66), Expect = 0.73
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 25/124 (20%)
Query: 143 DKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI 202
++ N + +R D H+ P GK + GET Q R L E+ T
Sbjct: 13 NENNEIFITRRAADAHMANK----------LEFPGGKIEMGETPEQAVVRELQEEVGITP 62
Query: 203 HARFYGNAPCGFYKFKYP-KSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREE 260
+ ++++P + + L+F+ + EG+ K W +
Sbjct: 63 QH----FSLFEKLEYEFPDRHI---------TLWFWLVERWEGEPWGKEGQPGEWMSLVG 109
Query: 261 LPKL 264
L
Sbjct: 110 LNAD 113
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 29.3 bits (66), Expect = 1.0
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 33/125 (26%)
Query: 155 LDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAE------KFNK-----TIH 203
+L +KEK W +P G G T + A + + E K
Sbjct: 76 FQNEKLLFVKEK--SDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKE 133
Query: 204 ARFYGNAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREEL 261
+ YK F + + G+ K E + EL
Sbjct: 134 KHQPSPSATHVYK------------------IFIGCEIIGGEKKTSIETEEVEFFGENEL 175
Query: 262 PKLLL 266
P L +
Sbjct: 176 PNLSI 180
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 28.7 bits (65), Expect = 1.1
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 160 VLLIKEKLGDKSH----WIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
L ++ S+ + P GK +EGE++++ +R + E+ + I
Sbjct: 19 YLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV----GEKLLTV 74
Query: 216 KFKYP-KSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREELPKL 264
YP + + F + K + W + E+ L
Sbjct: 75 HHTYPDFEI---------TMHAFLCHPVGQRYVLKEHIAAQWLSTREMAIL 116
>4ew8_A Sensor protein DIVL; signal transduction, two-component
regulatory system, hiska GHKL domain, structural
genomics; 2.50A {Caulobacter crescentus}
Length = 268
Score = 27.9 bits (63), Expect = 3.1
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 54 ERKPLITRDFNEIEKKVQLLMNELELENSMKSD------HELR 90
L+ R + ++ + L +K D +ELR
Sbjct: 10 HSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVGNVSYELR 52
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 27.5 bits (61), Expect = 3.8
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 155 LDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGF 214
+ +LL++E G W +P G ++++ + + E+ A A
Sbjct: 78 FQEDKILLVQENDG---LWSLPGGWCDVDQSVKDNVVKEVKEE------AGLDVEAQRVV 128
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKL 264
K+ A+S K+ F + L G+ + + + + + ++LP L
Sbjct: 129 AILDKHKNNPAKSAHRVTKV-FILCRLLGGEFQPNSETVASGFFSLDDLPPL 179
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 28.0 bits (63), Expect = 4.2
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 16/48 (33%)
Query: 58 LITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKS 105
++ + EIEK ++ LM++ D + + ++MK+ S
Sbjct: 409 VVAAE--EIEKGLKDLMDK---------DSIVH-----KKVQEMKEMS 440
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 27.2 bits (61), Expect = 6.4
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 14/55 (25%)
Query: 51 VCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKS 105
L+ R+ E+ + V+ LM E + +R + +++K+ +
Sbjct: 406 PRAGDDGLVRRE--EVARVVKGLMEGEEGK-------GVR-----NKMKELKEAA 446
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold,
reduction of to arsenite, oxidoreductase; 2.20A
{Corynebacterium glutamicum}
Length = 213
Score = 26.6 bits (59), Expect = 9.0
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 63 FNEIEKKVQLLMNELELENS 82
EI+ +++ L ++L +
Sbjct: 194 IEEIDGRIRELWKSIQLSQN 213
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 26.8 bits (60), Expect = 9.6
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 99 EKMKDKSLNV----DMIDDALQQTGQDFVDMGLNELKKFTPASR-----ITKADKENNVK 149
E ++ K + V D ID+ + +F K F S+ AD+ +
Sbjct: 448 ELLRKKGIEVLLLSDRIDEWMMNYLTEFDG------KPFQSVSKVDESLEKLADEVDESA 501
Query: 150 SMQRKLDKHLVLLIKEKLGDK 170
K + +K LG++
Sbjct: 502 KEAEKALTPFIDRVKALLGER 522
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,061,357
Number of extensions: 230966
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 73
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)