RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy169
(280 letters)
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 54.4 bits (130), Expect = 6e-10
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
+ LL++ G HW P G + GE +TA R E+
Sbjct: 27 NAIEFLLLQASDG-IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKREL 85
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--LEYTWAAREELPKLLLEDYNKNI 273
+ + + + + + +++ Y W EE +L K
Sbjct: 86 NYVARNKPKTV------IYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAA 139
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 48.5 bits (115), Expect = 6e-08
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 15/119 (12%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
K VLL+++++G W+ P G + GE++ + A R + E+
Sbjct: 12 AKREVLLLRDRMG---FWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVN 68
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK-LEYTWAAREELPKLLLEDYNKNI 273
+ ++ +F + ++ W + EE LL + +
Sbjct: 69 PKGVER-----------EVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGL 116
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 46.2 bits (109), Expect = 3e-07
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFKY 219
+LL + + G + GET+ Q R + E+ + Y + +
Sbjct: 16 ILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY----VTSQPWPF 71
Query: 220 PKSLQAESNVVGAKLFFFKAQYLEGDVK---DKKLEYTWAAREELPKL 264
P+SL F A+Y GD+ + LE W ++LP L
Sbjct: 72 PQSLM----------TAFMAEYDSGDIVIDPKELLEANWYRYDDLPLL 109
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 44.4 bits (104), Expect = 2e-06
Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 156 DKHLVLLIKEKLG-----DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNA 210
++ +LL++EK W +P G ++GE + A R E+ +
Sbjct: 22 ERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRP----VK 77
Query: 211 PCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKKL-----EYTWAAREELPKLL 265
G Y ++P + + A+ G E ++ +RE+ +L
Sbjct: 78 FLGAYLGRFPDGVL-------ILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLY 130
Query: 266 LEDYNKNISLFLM 278
+ L
Sbjct: 131 AAGQIRMYQTKLF 143
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 43.3 bits (101), Expect = 5e-06
Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 160 VLLIKEKLGD-KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
LL K + +W +P G+ Q+ ET+ ER+ + + G ++
Sbjct: 32 FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG--LRLPITAGQFYGVWQHF 89
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK---DKKLEYTWAAREELPKLLLEDYNKNISL 275
Y + + F+ + E ++ ++ +Y W + L ++ + N
Sbjct: 90 YDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLA--SDNVHANSRA 147
Query: 276 FLMDE 280
+ + E
Sbjct: 148 YFLAE 152
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 43.3 bits (101), Expect = 8e-06
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 160 VLLIKEKLGD-KSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
VLLI+ K ++ W +P G E+ + R E+ I + F
Sbjct: 56 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENI----EQLHSFS 111
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVK--DKKLEYTWAAREELPKLLLEDYN 270
P V + A E + D E W E + + +
Sbjct: 112 RPDRDPRGWVV----TVSYLAFIGEEPLIAGDDAKEVHWFNLERHGQHITLSHE 161
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 40.2 bits (93), Expect = 5e-05
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 8/119 (6%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHA-RFYGNAPCGF 214
++ +++ + + +P G+ + ET + R + E+ ++ + G A F
Sbjct: 27 PENNTMVLVQA--PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYF 84
Query: 215 YKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKKLEYTWAAREELPKLLLEDYNKNI 273
Y + A + ++ LE W A EE +LL ++
Sbjct: 85 YSNHRQTAYYNPGYFYVANTWRQLSEPLERT-----NTLHWVAPEEAVRLLKRGSHRWA 138
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 38.9 bits (90), Expect = 4e-04
Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 21/124 (16%)
Query: 160 VLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTI-----------HARFYG 208
+ IK K D W +P G GE + T +R E+ ++
Sbjct: 141 FVAIKRK--DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKL 198
Query: 209 NAPCGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK--------LEYTWAAREE 260
+ +K ++ + G++ D + W +
Sbjct: 199 FSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDIND 258
Query: 261 LPKL 264
KL
Sbjct: 259 KLKL 262
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 36.7 bits (84), Expect = 9e-04
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 16/127 (12%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
+L+K S W P GK + E+ A R + E+ N
Sbjct: 13 SMQQCVLVKGW-KASSGWGFPKGKIDKDESDVDCAIREVYEETG--FDCSSRINPNEFID 69
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGDV----KDKKLEYTWAAREELPKLLLEDYNK 271
+++ +L+ L+ + + + W +LP
Sbjct: 70 MTIRGQNV---------RLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 120
Query: 272 NISLFLM 278
+ F M
Sbjct: 121 MKNKFYM 127
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 35.8 bits (82), Expect = 0.002
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 12/123 (9%)
Query: 160 VLLIKEKLG-DKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFYKFK 218
VLL +K G W GK QEGET+ A R L E+ G F+
Sbjct: 18 VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEE----SGLTVDALHKVGQIVFE 73
Query: 219 YPKSLQAESNVVGAKLFFFKAQYLEGDVKDK-KLEYTWAAREELPKLLLEDYNKNISLFL 277
+ + F ++G + ++ W +++P + + L
Sbjct: 74 FV------GEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLL 127
Query: 278 MDE 280
+ +
Sbjct: 128 LQK 130
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 35.1 bits (80), Expect = 0.002
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 16/116 (13%)
Query: 153 RKLDKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPC 212
R + VLL+ WI+P G + E A R + E+
Sbjct: 20 RSESEEEVLLVSSS-RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTL----GRLV 74
Query: 213 GFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKKLE---YTWAAREELPKLL 265
G ++ + K ++ + D +D W E+ K+L
Sbjct: 75 GIFENQERKH--------RTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDAIKVL 122
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 35.3 bits (80), Expect = 0.003
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 12/121 (9%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCGFY 215
K LL++ HW P G GE Q A R E+ N T
Sbjct: 15 GKIEFLLLQAS-YPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETL 73
Query: 216 KFKYPKSLQAESNVVGAKLFFFKAQYLEGD---VKDKKLEYTWAAREELPKLLLEDYNKN 272
++ + + ++ A+ D + + + W E+ K+ +
Sbjct: 74 FYEAKGKPK--------SVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEMGS 125
Query: 273 I 273
+
Sbjct: 126 L 126
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 34.0 bits (77), Expect = 0.007
Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 156 DKHLVLLIK--EKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFNKTIHARFYGNAPCG 213
+ V++ + S + P G + E ++ R + E+ TI G
Sbjct: 19 ETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQL----VG 74
Query: 214 FYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDVKDKK-LEYTWAAREELPKLLLEDYNKN 272
+ + +KA G ++ + E +W ++++P L L
Sbjct: 75 IKNWPLDTG-------GRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAYDMLP 127
Query: 273 I 273
+
Sbjct: 128 L 128
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 32.1 bits (72), Expect = 0.036
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 15/123 (12%)
Query: 156 DKHLVLLIKEKLGDKSHWIMPFGKRQEGETMRQTAERILAEKFN----KTIHARFYGNAP 211
+ + W MP G EGE R A R L E+ + I Y
Sbjct: 24 NDKKIFAASRL-DIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTY 82
Query: 212 CGFYKFKYPKSLQAESNVVGAKLFFFKAQYLEGDV----------KDKKLEYTWAAREEL 261
K + ++Q S+ G +F ++ D K + E++W E+L
Sbjct: 83 DFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQL 142
Query: 262 PKL 264
L
Sbjct: 143 IDL 145
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 27.5 bits (60), Expect = 1.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 39 SGSREKWDLMSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRA 98
S E + + +C+ + + + +E+ ++L +NE ELE KS L+ ++I A
Sbjct: 112 SVYLEDYLGVKDLCISVPVTLGK--HGVERILELNLNEEELEAFRKSASILKNAINEITA 169
Query: 99 EK 100
E+
Sbjct: 170 EE 171
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 25.3 bits (55), Expect = 3.8
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 65 EIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKSLNVDMIDDALQQTGQDFVD 124
++ ++L E S + ELR +I E + + + D I+ + +
Sbjct: 14 TFAEQSRVLEKECTKIGSKRDSKELRY---KIETELIPNCTSVRDKIESNILIHQNGKLS 70
Query: 125 MGLNELKK 132
LK
Sbjct: 71 ADFKNLKT 78
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 26.1 bits (57), Expect = 4.3
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 10/131 (7%)
Query: 48 MSAVCLERKPLITRDFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKDKSLN 107
L + IEK + + N L + E+ KD
Sbjct: 61 PDPRTLVVQSWDQNALKAIEKAI---RDSDLGLNPSNKGDALYINIPPLTEERRKD---L 114
Query: 108 VDMIDDALQQTGQDFVDM---GLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIK 164
V + ++ ++ L++LKK +++ + + +Q+ D+ +
Sbjct: 115 VRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEF-IAKAD 173
Query: 165 EKLGDKSHWIM 175
+ K I+
Sbjct: 174 QLAEKKEQEIL 184
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 25.7 bits (56), Expect = 4.9
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 62 DFNEIEKKVQLLMNELELENSMKSDHELRCIADQIRAEKMKD-KSLNVDMIDDALQQTGQ 120
D + + +M N + ++R + E+ KD + + A
Sbjct: 71 DRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRN 130
Query: 121 DFVDMGLNELKKFTPASRITKADKENNVKSMQRKLDKHLVLLIKEKLGDKSHWIMPF 177
D +++K I++ D + +Q+ D + I+ L DK +M F
Sbjct: 131 VRRD-ANDKVKALLKDKEISEDDDRRSQDDVQKLTDAA-IKKIEAALADKEAELMQF 185
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,613
Number of extensions: 44463
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 27
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)