BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1690
(218 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|270007320|gb|EFA03768.1| hypothetical protein TcasGA2_TC013879 [Tribolium castaneum]
Length = 387
Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 125/219 (57%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEK+GR+HTSTVSV LPQP +IEV++D KDLK+ETKRA+GAGGQHVNTT+SAV
Sbjct: 209 VQRIPTTEKAGRIHTSTVSVVALPQPTEIEVNIDNKDLKIETKRASGAGGQHVNTTESAV 268
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG SVE Q DRSQ+KNR ALAKL+ LIY+ EEQ + R R +
Sbjct: 269 RVTHLPTGFSVECQVDRSQVKNRQIALAKLRALIYQRDLEEQ----IARNENMRKNQVRS 324
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ I + P DRITDHR+
Sbjct: 325 NFRNEKIRTYNFP--------------------------------------QDRITDHRL 346
Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
Q V+N+ F+ G L LI + D Q++I+ LL+
Sbjct: 347 QGCNVHNLKGFLQGNDALGSLIKKL---DQQYKIETLLN 382
>gi|91081965|ref|XP_967739.1| PREDICTED: similar to AGAP012082-PA, partial [Tribolium castaneum]
Length = 383
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 125/219 (57%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEK+GR+HTSTVSV LPQP +IEV++D KDLK+ETKRA+GAGGQHVNTT+SAV
Sbjct: 209 VQRIPTTEKAGRIHTSTVSVVALPQPTEIEVNIDNKDLKIETKRASGAGGQHVNTTESAV 268
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG SVE Q DRSQ+KNR ALAKL+ LIY+ EEQ + R R +
Sbjct: 269 RVTHLPTGFSVECQVDRSQVKNRQIALAKLRALIYQRDLEEQ----IARNENMRKNQVRS 324
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ I + P DRITDHR+
Sbjct: 325 NFRNEKIRTYNFP--------------------------------------QDRITDHRL 346
Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
Q V+N+ F+ G L LI + D Q++I+ LL+
Sbjct: 347 QGCNVHNLKGFLQGNDALGSLIKKL---DQQYKIETLLN 382
>gi|395535168|ref|XP_003769603.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Sarcophilus harrisii]
Length = 383
Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I + + KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 205 VQRVPKTEKQGRMHTSTMTVAVLPQPSEINLVISPKDLRIETKRASGAGGQHVNTTDSAV 264
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++ E Q++RSQIKN+ A+ KL+ +Y +Q EE+ N+ + +AR I
Sbjct: 265 RIVHLPTGVATECQQERSQIKNKEMAMKKLRAKLYGMQLEEENNK-------RYNARKI- 316
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 317 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 341
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I +++Y++ FM G +L EL+ ++++ DY+
Sbjct: 342 ISKSLYDIQSFMLGEYLLDELVQSLKEYADYE 373
>gi|195472530|ref|XP_002088553.1| GE18626 [Drosophila yakuba]
gi|194174654|gb|EDW88265.1| GE18626 [Drosophila yakuba]
Length = 392
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 129/218 (59%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P DI+VH+ EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR A+ +L+ + + Q E E ++ TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQQLESVE---ANKMATKKAQQGSL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DRITDHRI
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRITDHRI 341
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L LI ++ + R+ +LL
Sbjct: 342 QGGTLHNLDGFLKGGDQLSGLIEKLQMEHRKERLKELL 379
>gi|19921226|ref|NP_609617.1| CG5705 [Drosophila melanogaster]
gi|7298021|gb|AAF53262.1| CG5705 [Drosophila melanogaster]
gi|16769148|gb|AAL28793.1| LD18447p [Drosophila melanogaster]
gi|220943136|gb|ACL84111.1| CG5705-PA [synthetic construct]
gi|220953196|gb|ACL89141.1| CG5705-PA [synthetic construct]
Length = 392
Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 129/218 (59%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P DI+VH+ EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR A+ +L+ + + Q E E ++ TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQQLESVE---ASKMATKKAQQGSL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DRITDHRI
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRITDHRI 341
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L LI ++ + R+ +LL
Sbjct: 342 QGGTLHNLNGFLKGGDQLSGLIEKLQLEHRRERLKELL 379
>gi|291243180|ref|XP_002741481.1| PREDICTED: CG5705-like [Saccoglossus kowalevskii]
Length = 411
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 128/210 (60%), Gaps = 48/210 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP++I++ + DLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 226 VQRVPKTEKQGRVHTSTMTVAVLPQPREIDLQIKPSDLKIETKRASGAGGQHVNTTDSAV 285
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+ E Q++RSQIKN+A A+ L+ +Y Q EEQ++ +R +R
Sbjct: 286 RIVHLPTGIAAECQQERSQIKNKAMAMKVLETRLYNKQLEEQQH-------IQRQSR--- 335
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
K G+ G + + T + + DRITD
Sbjct: 336 -----------------------------------KLQVGSSGRSEKIRTYNFNQDRITD 360
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
HRI + ++N+ F+SGG L++LI ++++
Sbjct: 361 HRIGQHLHNIDGFLSGGDDLNDLIESLQEY 390
>gi|194860855|ref|XP_001969666.1| GG23822 [Drosophila erecta]
gi|190661533|gb|EDV58725.1| GG23822 [Drosophila erecta]
Length = 392
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 128/218 (58%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P DI VH+ EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADIHVHIAEKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR A+ +L+ + + Q E E ++ TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQQLESAE---ASKMATKKAQQGSL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DRITDHRI
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRITDHRI 341
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L LI ++ + R+ +LL
Sbjct: 342 QGGTMHNLDGFLKGGDQLCGLIEKLQLEHRKERLKELL 379
>gi|195435374|ref|XP_002065668.1| GK14545 [Drosophila willistoni]
gi|194161753|gb|EDW76654.1| GK14545 [Drosophila willistoni]
Length = 397
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/218 (41%), Positives = 127/218 (58%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P D++VH EKDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 206 VQRVPATEKSGRIHTSTASITVIPKPADVQVHTAEKDLRIETKRASGAGGQHVNTTDSAV 265
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR AL +L+ + + Q E E L TK++ + +
Sbjct: 266 RIVHLPTGLAVEAQSERSQLKNREVALKRLQARLVQQQLESSE---ATHLATKKAQQGSL 322
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DRITDHRI
Sbjct: 323 NRNE---------------------------KIRTYNFV------------QDRITDHRI 343
Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L LI ++ + R+ ++L
Sbjct: 344 QNGTLHNLNGFLQGGEQLSGLIEKLQLEQRKARLVEML 381
>gi|118088382|ref|XP_419682.2| PREDICTED: mitochondrial translational release factor 1-like
[Gallus gallus]
Length = 394
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++E+ ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 215 VQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLRIETKRASGAGGQHVNTTDSAV 274
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG++ E Q++RSQI+N+ A+ L +Y I+ EE+ + + SAR I
Sbjct: 275 RIVHIPTGVTSECQQERSQIRNKEKAMQMLCAKLYNIKLEEENKK-------RNSARKI- 326
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + DRITDHR
Sbjct: 327 -----------------------------------QIGTKGRSEKIRTYNFPQDRITDHR 351
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I R+V++ FM G ML E+I ++++ DY+
Sbjct: 352 ISRSVHHTECFMLGEEMLDEMIKTLKEYADYE 383
>gi|321479100|gb|EFX90056.1| hypothetical protein DAPPUDRAFT_299896 [Daphnia pulex]
Length = 417
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 48/220 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK+GR+HTSTV+VA+LP+P ++ V++++KDLK+ETKRA+GAGGQHVNTT+SAV
Sbjct: 238 VQRVPKTEKAGRVHTSTVAVAILPRPSEVTVNIEQKDLKIETKRASGAGGQHVNTTESAV 297
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIP+G+ E Q RSQ++NR A+ K++ +++++ ++Q L T RS+R
Sbjct: 298 RIVHIPSGVVAECQTQRSQMQNRKVAIDKIRARLFQMKIDQQ-------LATTRSSR--- 347
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
K G+ G + + T + DRITD
Sbjct: 348 -----------------------------------KLQVGSSGRSEKIRTYNFPQDRITD 372
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
HRI T +N+ EF+ G H LI +++ Y+ R+ + L
Sbjct: 373 HRINFTSHNLGEFLRGARPFHVLIEKLKEESYKERVFEFL 412
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 50/78 (64%), Gaps = 7/78 (8%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHE---L 200
V++E+KDLK+ETKRA+GAGGQHVNTT+SA RI I V VAE + + +
Sbjct: 268 VNIEQKDLKIETKRASGAGGQHVNTTESAVRIV--HIPSGV--VAECQTQRSQMQNRKVA 323
Query: 201 ISDIRQHDYQFRIDQLLS 218
I IR +Q +IDQ L+
Sbjct: 324 IDKIRARLFQMKIDQQLA 341
>gi|126311212|ref|XP_001381267.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Monodelphis domestica]
Length = 567
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 129/211 (61%), Gaps = 43/211 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ K+L++ETKRA+GAGGQHVNTTDSAV
Sbjct: 205 VQRVPKTEKQGRMHTSTMTVAILPQPTEINLVINPKELRIETKRASGAGGQHVNTTDSAV 264
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++ E Q++RSQIKN+ A+ KL+ +Y + EE+ N+ + SAR I
Sbjct: 265 RIVHLPTGVATECQQERSQIKNKEMAMKKLRAKLYSMLLEEETNK-------RYSARKI- 316
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ + + K+ T H +R+TDHRI
Sbjct: 317 ----------------------QIGTKGRSEKIRT--------YHF----PQNRVTDHRI 342
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
+++Y++ FM G +L ELI ++++ DY+
Sbjct: 343 SKSLYDIQSFMLGEYLLDELIQSLKEYADYE 373
>gi|345305431|ref|XP_001510216.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 375
Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR HTST++VAVLPQP +I + + KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 197 VQRVPKTERQGRTHTSTMTVAVLPQPTEINLVIHPKDLRIETKRASGAGGQHVNTTDSAV 256
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+ E Q++RSQ+KNR A+ KL+ +Y IQ EE+ ++ + SAR I
Sbjct: 257 RIVHVPTGIASECQQERSQLKNREMAMKKLRAKLYSIQLEEETSK-------RYSARKI- 308
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + S DR+TDHR
Sbjct: 309 -----------------------------------QIGTKGRSEKIRTYNFSQDRVTDHR 333
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++ +++ FM G +L ELI ++++ DY+
Sbjct: 334 ISKSFHDIESFMLGERLLDELIHSLKEYSDYE 365
>gi|383863949|ref|XP_003707442.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Megachile rotundata]
Length = 332
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 120/201 (59%), Gaps = 46/201 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTSTV V + P+P+D+++ L+EKDLK+E+KRA+GAGGQHVNTTDSA+
Sbjct: 152 VQRVPVTEKSGRMHTSTVFVTIFPEPRDVDIKLEEKDLKIESKRASGAGGQHVNTTDSAI 211
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGISV +Q DRSQ+KN+ AL KLK ++Y+I+ ++Q
Sbjct: 212 RITHLPTGISVTNQTDRSQLKNKKVALMKLKSILYQIEMDKQ------------------ 253
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
S I A R+ T K+E R + DRITDHRI
Sbjct: 254 ---VSFITALRKKQMT---------------KLEKIRTYNF---------NQDRITDHRI 286
Query: 181 -QRTVYNVAEFMSGGAMLHEL 200
T++N+ F+ G L EL
Sbjct: 287 LDGTMHNLKGFLKDGLPLVEL 307
>gi|193613150|ref|XP_001944471.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Acyrthosiphon pisum]
Length = 400
Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 130/218 (59%), Gaps = 44/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEKSGR+HTSTV+VA+LPQP +++V ++++DL +ETKRA+GAGGQHVN TDSA+
Sbjct: 219 VQRVPKTEKSGRIHTSTVTVAILPQPTELDVVINDRDLVIETKRASGAGGQHVNKTDSAI 278
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RM H PTG+ VE Q DRSQIKNR AL KL+ +IY+ Q E+Q++ RSAR
Sbjct: 279 RMHHKPTGVIVECQTDRSQIKNRKIALQKLRAIIYKKQLEQQQS-------LTRSAR--- 328
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ + + A + + T + + DRITDHR
Sbjct: 329 ---------------------------------KQQVGSSARSEKIRTYNFNQDRITDHR 355
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
+ ++ +N+ F+ G L +++ ++++ Q ++ +
Sbjct: 356 LTKSFHNLVGFLEGREYLDKVVIELQERAKQILFNEFI 393
>gi|390367509|ref|XP_797931.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 560
Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 44/209 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST+++AVLPQPK+I++ LD KDL+VETK+A+GAGGQHVNTTDSAV
Sbjct: 374 VQRVPRTESKGRIHTSTMAIAVLPQPKEIDLKLDPKDLRVETKKASGAGGQHVNTTDSAV 433
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGIS ESQ++RSQ KNR+ A+ L+ IY +Q + ++RS R+
Sbjct: 434 RITHLPTGISAESQQERSQHKNRSIAMTMLQTRIYNRILADQTS-------SERSMRS-- 484
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
++ TG + + T + DRITDHR
Sbjct: 485 ----------------------------------SQVGTGGRSEKIRTYNYQQDRITDHR 510
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
RTV+ V E++ G +L E+++ + D
Sbjct: 511 RGRTVHGVPEYLLGSELLDEMVTSCVEGD 539
>gi|449277864|gb|EMC85886.1| Peptide chain release factor 1-like, mitochondrial, partial
[Columba livia]
Length = 299
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 45/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++ + ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 116 VQRVPKTEKQGRIHTSTMTVAILPQPTEMRLQINPKDLRIETKRASGAGGQHVNTTDSAV 175
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTGI E Q++RSQI+N+ A+ L +Y + EE+ + + S R I
Sbjct: 176 RIVHIPTGIVSECQQERSQIRNKEKAMQMLSAKLYNAKLEEETKK-------RNSVRKI- 227
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + DRITDHR
Sbjct: 228 -----------------------------------QIGTKGRSEKIRTYNFPQDRITDHR 252
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRID 214
I R+V++V FM G ML E+I +R++ DY+ I+
Sbjct: 253 ISRSVHHVECFMLGQGMLDEMIQTLREYADYESLIE 288
>gi|326915756|ref|XP_003204179.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Meleagris gallopavo]
Length = 393
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 123/208 (59%), Gaps = 44/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++E+ ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 214 VQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLRIETKRASGAGGQHVNTTDSAV 273
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG++ E Q++RSQI+N+ A+ L +Y I+ EE+ + + S R I
Sbjct: 274 RIVHIPTGVASECQQERSQIRNKEKAMQMLCAKLYNIKLEEETKK-------RNSVRKI- 325
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + DRITDHR
Sbjct: 326 -----------------------------------QIGTKGRSEKIRTYNFPQDRITDHR 350
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I R+V+++ FM G ML E+I ++++
Sbjct: 351 ISRSVHHIECFMLGEEMLDEMIQTLKEY 378
>gi|320169793|gb|EFW46692.1| peptide chain release factor 1 [Capsaspora owczarzaki ATCC 30864]
Length = 523
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 132/219 (60%), Gaps = 45/219 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VA+LP+ +D+++ L+E+DL++ET RA+GAGGQHVN T+SA+
Sbjct: 336 VQRVPQTESQGRVHTSTVTVALLPEAQDVDIELNERDLRIETMRASGAGGQHVNKTESAI 395
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+GI+V QEDRSQ KNRA A + L+ +YEIQ E +L +R+A
Sbjct: 396 RVTHIPSGIAVHVQEDRSQHKNRAKAYSVLRARLYEIQRE--------KLAQERAA---- 443
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
HR E + TG+ + + T + DR+TDHR
Sbjct: 444 HRAE-------------------------------QVGTGSRSERIRTYNFPQDRVTDHR 472
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ T++ V EF+ G L E+I+ +R H++ + LL+
Sbjct: 473 VNVTLHGVPEFLLGEG-LDEIIASLRTHEHAEELAHLLN 510
>gi|332375689|gb|AEE62985.1| unknown [Dendroctonus ponderosae]
Length = 400
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/218 (45%), Positives = 122/218 (55%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKS R+HTSTVSV LPQP +I++ +D KDLK+ETKR+TGAGGQHVNTTDSAV
Sbjct: 220 VQRIPSTEKSSRIHTSTVSVTALPQPNEIDIRIDPKDLKIETKRSTGAGGQHVNTTDSAV 279
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PT I VE Q DRSQIKNR AL KL+ L+Y+ + EEQ + TK+S +
Sbjct: 280 RIVHLPTNIMVECQVDRSQIKNRKLALTKLRALLYQRELEEQ---LAQQESTKKSQVSSN 336
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T + DRITDHR+
Sbjct: 337 NRNE---------------------------KIRTYNF------------NQDRITDHRL 357
Query: 181 QRT-VYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
+N+ FM GA L EL Q D Q RI LL
Sbjct: 358 SGVHFHNIKMFMETGADLEELNE---QLDRQARISSLL 392
>gi|125984748|ref|XP_001356138.1| GA19071 [Drosophila pseudoobscura pseudoobscura]
gi|54644457|gb|EAL33198.1| GA19071 [Drosophila pseudoobscura pseudoobscura]
Length = 392
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 127/218 (58%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEK+GR+HTSTVS+ V+P+P D+ VH+ EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKAGRMHTSTVSITVIPRPADVHVHIAEKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR AL +L+ + + Q E E + TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELALKRLQARLVQQQLESSE---ASKQATKKAQQGSL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DR+TDHRI
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRVTDHRI 341
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L L+ ++ + R+ LL
Sbjct: 342 QGGTLHNLDGFLKGGESLSGLVEKLQLEHRRSRLRDLL 379
>gi|195398186|ref|XP_002057705.1| GJ17953 [Drosophila virilis]
gi|194141359|gb|EDW57778.1| GJ17953 [Drosophila virilis]
Length = 393
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 129/219 (58%), Gaps = 44/219 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P D++VH+ E+DLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADVQVHIAERDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VESQ +RSQ+KNR AL +L+ + + Q E E + T+++ + +
Sbjct: 264 RIVHLPTGLAVESQSERSQLKNRELALKRLQAKLMQQQLESSE---ATKQATRKAQQGNL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DR+TDHR+
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRVTDHRV 341
Query: 181 QR--TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q+ T +N++ F+ GG L +LI + + ++ +L+
Sbjct: 342 QQGGTQHNLSGFLEGGQPLSDLIERLHLEQRKLKLVELI 380
>gi|449497526|ref|XP_002187712.2| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Taeniopygia guttata]
Length = 343
Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 123/212 (58%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++ + ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 160 VQRVPKTEKQGRIHTSTMTVAILPQPTEMRLQINPKDLRIETKRASGAGGQHVNTTDSAV 219
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTGI E Q++RSQI+N+ A+ L +Y + EE+ + + AR I
Sbjct: 220 RIVHIPTGIVSECQQERSQIRNKEKAMQMLCAKLYNAKLEEETKK-------RNYARKI- 271
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + DRITDHR
Sbjct: 272 -----------------------------------QIGTKGRSEKIRTYNFPQDRITDHR 296
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I R+V++V FM G ML E+I +R++ DY+
Sbjct: 297 ISRSVHHVESFMLGEEMLDEMIQTLREYADYE 328
>gi|390367365|ref|XP_793802.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 348
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/209 (42%), Positives = 124/209 (59%), Gaps = 44/209 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST+++AVLPQPK+I++ LD KDL+VETK+A+GAGGQHVNTTDSAV
Sbjct: 162 VQRVPRTESKGRIHTSTMAIAVLPQPKEIDLKLDPKDLRVETKKASGAGGQHVNTTDSAV 221
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGIS ESQ++RSQ KNR A+ L+ IY +Q + ++RS R+
Sbjct: 222 RITHLPTGISAESQQERSQHKNRFIAMTMLQTRIYNRILADQTS-------SERSIRS-- 272
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
++ TG + + T + DRITDHR
Sbjct: 273 ----------------------------------SQVGTGGRSEKIRTYNYQQDRITDHR 298
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
RTV+ V E++ G +L E+++ + D
Sbjct: 299 RGRTVHGVPEYLLGSELLDEMVTSCVEGD 327
>gi|195031191|ref|XP_001988305.1| GH11092 [Drosophila grimshawi]
gi|193904305|gb|EDW03172.1| GH11092 [Drosophila grimshawi]
Length = 395
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 129/219 (58%), Gaps = 44/219 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P D+ VHL ++DLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPTTEKSGRMHTSTASITVIPRPADVHVHLTDRDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE Q +RSQ+KNR AL +L+ + + Q E E + T++S + +
Sbjct: 264 RIVHLPTGLAVECQSERSQLKNRELALKRLQAKLMQQQLESAE---ASKQATRKSQQGNL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DR+TDHR+
Sbjct: 321 NRNE---------------------------KIRTYNFM------------QDRVTDHRV 341
Query: 181 QR--TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q+ T++N++ F++GG L LI ++ + ++ +LL
Sbjct: 342 QQGGTLHNLSGFLAGGQQLSVLIERLQLEQRKSKLVELL 380
>gi|194761148|ref|XP_001962794.1| GF14253 [Drosophila ananassae]
gi|190616491|gb|EDV32015.1| GF14253 [Drosophila ananassae]
Length = 392
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 43/218 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P D++VH+ +KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADVQVHIADKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR A+++L+ + + Q E E TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELAMSRLRSRLVQRQLESAE---ASTKATKKAQQGSL 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DRITDHR+
Sbjct: 321 NRNE---------------------------KIRTYNFV------------QDRITDHRL 341
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q T++N+ F+ GG L LI ++ + R+ LL
Sbjct: 342 QGGTMHNLDGFLKGGEQLTSLIEKLQLEHRKERLKDLL 379
>gi|340714431|ref|XP_003395732.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Bombus terrestris]
Length = 411
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/201 (44%), Positives = 115/201 (57%), Gaps = 43/201 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGRLHTST V + P+PKDIE+ +DEKDL +E+K+A+GAGGQHVNTTDSAV
Sbjct: 228 VQRIPITEKSGRLHTSTAVVIITPEPKDIEIKIDEKDLIIESKKASGAGGQHVNTTDSAV 287
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG SV Q +R QIKNR AL KL+ +++E Q ++Q V + K + +
Sbjct: 288 RIIHIPTGKSVTCQNNRCQIKNRKLALTKLRTILFEEQLDQQ-----VSFINKIRKKQMG 342
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R L+ E R + DRITDHRI
Sbjct: 343 MR----------------------------LRNEKIRTYNF---------NKDRITDHRI 365
Query: 181 QR-TVYNVAEFMSGGAMLHEL 200
T+YN+ EFM GA L +L
Sbjct: 366 SNGTMYNLKEFMENGADLEKL 386
>gi|332213665|ref|XP_003255945.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 1 [Nomascus leucogenys]
Length = 380
Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI RT++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINRTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|332213669|ref|XP_003255947.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 3 [Nomascus leucogenys]
Length = 344
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 226 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 278 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 300
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI RT++++ FM G +L EL+ ++++ DY+
Sbjct: 301 HRINRTLHDLETFMQGDYLLDELVQSLKEYADYE 334
>gi|307198741|gb|EFN79544.1| Peptide chain release factor 1-like, mitochondrial [Harpegnathos
saltator]
Length = 362
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 120/202 (59%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEK GR+HTST SVA+LP P ++E+ ++E+DLK+ETKRA+G+GGQHVN T+SAV
Sbjct: 179 VQRVPTTEKLGRVHTSTASVAILPIPSEVEIVINERDLKIETKRASGSGGQHVNKTNSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ VE Q RSQI+N+ A+ +L+ ++YE Q +Q
Sbjct: 239 RITHIPTGLIVECQVHRSQIRNKKLAMMRLRNMMYEQQLNKQ------------------ 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+FR L +K + G + V T + + DR+TDHR
Sbjct: 281 -------TSFRSE------------LRKKQI------GMGFRNEKVRTYNYNQDRVTDHR 315
Query: 180 IQR-TVYNVAEFMSGGAMLHEL 200
+Q T YN++EFM GGA L +L
Sbjct: 316 LQNGTFYNLSEFMQGGAGLEQL 337
>gi|410960256|ref|XP_003986709.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Felis catus]
Length = 379
Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ N+ + SAR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMHLEEETNK-------RYSARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QVGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 339 INKSLHDLETFMQGEYLLDELVRSLKDYADYE 370
>gi|328788515|ref|XP_001119866.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Apis mellifera]
Length = 354
Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 123/214 (57%), Gaps = 44/214 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGRLHTST V +LP+PKD+++ L++KDL +E+K+A+GAGGQHVNTTDSA+
Sbjct: 171 VQRIPATEKSGRLHTSTAVVTILPEPKDVDIKLEDKDLIIESKKASGAGGQHVNTTDSAI 230
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V Q +RSQIKN+ AL KLK L+Y EE+ N+ V + I
Sbjct: 231 RITHIPTGTIVTCQTNRSQIKNKQIALTKLKSLLY----EEELNKQV----------SFI 276
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
++ I K L+ E R + DR+TDHRI
Sbjct: 277 NQIRKKQIG-------------------KRLRNEKIRTYNF---------NQDRVTDHRI 308
Query: 181 -QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
T+YN+ EFM G L E++ D D Q +I
Sbjct: 309 PNGTMYNLKEFMENGTSL-EILEDRLYKDMQSKI 341
>gi|114609863|ref|XP_518818.2| PREDICTED: mitochondrial translational release factor 1-like
isoform 6 [Pan troglodytes]
gi|397480536|ref|XP_003811536.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 1 [Pan paniscus]
gi|410226402|gb|JAA10420.1| mitochondrial translational release factor 1-like [Pan troglodytes]
gi|410263784|gb|JAA19858.1| mitochondrial translational release factor 1-like [Pan troglodytes]
gi|410293262|gb|JAA25231.1| mitochondrial translational release factor 1-like [Pan troglodytes]
gi|410350425|gb|JAA41816.1| mitochondrial translational release factor 1-like [Pan troglodytes]
Length = 380
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|426354945|ref|XP_004044901.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Gorilla gorilla gorilla]
Length = 380
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|307176123|gb|EFN65821.1| Peptide chain release factor 1-like, mitochondrial [Camponotus
floridanus]
Length = 412
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/202 (42%), Positives = 122/202 (60%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE+SGR+HTST SVA+LP P +++ +++KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 228 VQRIPATERSGRVHTSTASVAILPTPSKVQIVINDKDLKIETKRASGAGGQHVNTTDSAV 287
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ ++P+G+SV Q RSQIKN+ A+ KL+ ++YE Q +Q
Sbjct: 288 RIIYLPSGLSVSCQMHRSQIKNKEVAMIKLRSILYEQQLNKQ------------------ 329
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TT S L +K + ++++ + V T + + DR+TDHR
Sbjct: 330 --------------TTFISE-----LRQKQMGMKSR------NEKVRTYNYNQDRVTDHR 364
Query: 180 IQR-TVYNVAEFMSGGAMLHEL 200
+Q T+YN+ EFM GG L +L
Sbjct: 365 LQNGTMYNLPEFMQGGVALEKL 386
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 10/82 (12%)
Query: 95 YEIQFEEQENRWVVRL-VTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKV 153
Y++Q+E +R V R+ T+RS R +H + + + P S + + +KDLK+
Sbjct: 217 YKLQYEGGVHR-VQRIPATERSGR--VHTSTASVAILPTP------SKVQIVINDKDLKI 267
Query: 154 ETKRATGAGGQHVNTTDSADRI 175
ETKRA+GAGGQHVNTTDSA RI
Sbjct: 268 ETKRASGAGGQHVNTTDSAVRI 289
>gi|402867921|ref|XP_003898077.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Papio anubis]
Length = 362
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 184 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E++ N+ +++AR I
Sbjct: 244 RIVHLPTGVVSECQQERSQLKNRELAMKKLRAKLYSMHLEKEANK-------RQNARKI- 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 296 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 319 HRISKTLHDLETFMQGDYLLDELVQSLKEYADYE 352
>gi|301786516|ref|XP_002928673.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Ailuropoda melanoleuca]
Length = 380
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAVLPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + SAR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSK-------RYSARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QVGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLKDYADYE 370
>gi|410900868|ref|XP_003963918.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Takifugu rubripes]
Length = 380
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 44/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 198 VQRVPKTEKQGRMHTSTMTVAVLPQPTEISFTINSKDLRIETKRASGAGGQHVNTTDSAV 257
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ L+ +Y ++ EE+ +KR
Sbjct: 258 RIVHLPTGVVAECQQERSQLKNREKAMKALRAKLYSMKLEEE--------TSKR------ 303
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
++ +++ TK + + T + A DRITDHR
Sbjct: 304 -------------------------YNQRKIQIGTK----GRSEKIRTYNFAQDRITDHR 334
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I TV+++ F+ G +L E+ S + + Q + +LL
Sbjct: 335 IGMTVHDIKNFLMGEDLLDEMNSSVCELSNQEALMELL 372
>gi|297679452|ref|XP_002817544.1| PREDICTED: mitochondrial translational release factor 1 isoform 1
[Pongo abelii]
Length = 380
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMRGDYLLDELVQSLKEYADYE 370
>gi|297679454|ref|XP_002817545.1| PREDICTED: mitochondrial translational release factor 1 isoform 2
[Pongo abelii]
Length = 344
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 226 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 278 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 300
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 301 HRINKTLHDLETFMRGDYLLDELVQSLKEYADYE 334
>gi|114609865|ref|XP_001140693.1| PREDICTED: mitochondrial translational release factor 1-like
isoform 4 [Pan troglodytes]
gi|397480540|ref|XP_003811538.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 3 [Pan paniscus]
Length = 344
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 226 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNK-------RQNARKI- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 278 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 300
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 301 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 334
>gi|281345517|gb|EFB21101.1| hypothetical protein PANDA_018665 [Ailuropoda melanoleuca]
Length = 379
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAVLPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + SAR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSK-------RYSARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QVGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLKDYADYE 370
>gi|194387338|dbj|BAG60033.1| unnamed protein product [Homo sapiens]
Length = 344
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 226 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 278 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 300
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 301 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 334
>gi|15080204|gb|AAH11873.1| Mitochondrial translational release factor 1-like [Homo sapiens]
gi|119568097|gb|EAW47712.1| mitochondrial translational release factor 1-like, isoform CRA_a
[Homo sapiens]
gi|119568101|gb|EAW47716.1| mitochondrial translational release factor 1-like, isoform CRA_a
[Homo sapiens]
gi|312151704|gb|ADQ32364.1| mitochondrial translational release factor 1-like [synthetic
construct]
Length = 380
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|332027664|gb|EGI67732.1| Peptide chain release factor 1-like, mitochondrial [Acromyrmex
echinatior]
Length = 406
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/218 (41%), Positives = 125/218 (57%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST SVA+LP P +I++ ++E DLK+ETKR++GAGGQHVNTTDSAV
Sbjct: 223 VQRVPATEKSGRVHTSTASVAILPVPSEIQIMINENDLKIETKRSSGAGGQHVNTTDSAV 282
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+SV Q DRSQ +N+ A+ KL+ ++YE Q + K+++ T
Sbjct: 283 RITHLPSGLSVTCQVDRSQNRNKKIAMDKLRSILYEQQ------------LNKQTSFTSK 330
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R + + FR K+ T + +R+TDHR+
Sbjct: 331 LRQKQMGMGFRNE------------------KIRTYNY------------NQNRVTDHRL 360
Query: 181 -QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
Q +N+ EFM GG L EL + H RI+ LL
Sbjct: 361 GQNGTFNLIEFMQGGIALKELEDRLCNH---MRIETLL 395
>gi|327262069|ref|XP_003215848.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Anolis carolinensis]
Length = 394
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 126/208 (60%), Gaps = 44/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ K+L++ETKRA+GAGGQHVNTTDSAV
Sbjct: 211 VQRVPKTEKQGRIHTSTMTVAILPQPNEINLTINPKELRIETKRASGAGGQHVNTTDSAV 270
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG+ E Q++RSQIKN+A A+ L+ +Y ++ E++ + + +AR
Sbjct: 271 RILHIPTGVVSECQQERSQIKNKAKAIQILRAKLYNMKLEDESRK-------RETAR--- 320
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
K++T T + + T + DR+TDHR
Sbjct: 321 -------------------------------KIQT--GTKGRSEKIRTYNFPQDRVTDHR 347
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I R+V+++ +FM G +L E+I + ++
Sbjct: 348 ISRSVHHIEQFMLGEELLDEMIQALGEY 375
>gi|166795303|ref|NP_061914.3| peptide chain release factor 1-like, mitochondrial isoform a [Homo
sapiens]
gi|74753314|sp|Q9UGC7.1|RF1ML_HUMAN RecName: Full=Peptide chain release factor 1-like, mitochondrial;
AltName: Full=Mitochondrial translational release factor
1-like; AltName: Full=mtRF1a; Flags: Precursor
gi|158254756|dbj|BAF83351.1| unnamed protein product [Homo sapiens]
Length = 380
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|47218188|emb|CAF97052.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 44/219 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I +++KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 232 VQRVPKTEKQGRMHTSTMTVAVLPQPTEISFTINQKDLRIDTKRASGAGGQHVNTTDSAV 291
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ L+ +Y ++ EE+ +KR
Sbjct: 292 RIVHLPTGVVAECQQERSQLKNREKAMKALRAKLYSLKLEEE--------TSKR------ 337
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
++ +++ TK + + T + A DRITDHR
Sbjct: 338 -------------------------YNQRKIQIGTK----GRSEKIRTYNFAQDRITDHR 368
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T++++ F+ G +L E+ S + + Q + +LL
Sbjct: 369 IGMTLHDIKNFLLGEDLLDEMNSSVCEFSNQEALMELLG 407
>gi|345498256|ref|XP_001606563.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Nasonia vitripennis]
Length = 411
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 122/214 (57%), Gaps = 52/214 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSV VLPQP DI+V + KDL+++T RA+GAGGQHVNTT+SAV
Sbjct: 231 VQRVPATEKSGRIHTSVVSVGVLPQPNDIQVEIHAKDLRIDTMRASGAGGQHVNTTNSAV 290
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+SVE Q DRSQI+NR A+AKL+ +YE + Q RSA +
Sbjct: 291 RVTHLPTGMSVECQTDRSQIRNRELAMAKLRAKMYEQKLARQ----------LRSASEM- 339
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQH--VNTTD-SADRITD 177
K+ G G +H + T + + DR+TD
Sbjct: 340 ----------------------------------RKQQMGMGERHEKIRTYNFNQDRVTD 365
Query: 178 HRIQR-TVYNVAEFMSGGAM---LHELISDIRQH 207
HR+ T++N+ F+ GG LHE +S QH
Sbjct: 366 HRLSNGTLHNLKGFLEGGMALDGLHERLSKDMQH 399
>gi|403284920|ref|XP_003933796.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 1 [Saimiri boliviensis boliviensis]
Length = 382
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 127/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE N+ + +AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNRELAMKKLRAKLYSMHLEENTNK-------RNNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI ++++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRISKSLHDLQTFMQGDYLLDELVQSLKEYADYE 370
>gi|349732236|ref|NP_001231863.1| peptide chain release factor 1-like, mitochondrial [Sus scrofa]
Length = 380
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 124/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + +AR +
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSLHLEEETSK-------RYNARKV- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QVGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I +++Y++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLYDLGTFMQGEYLLDELVQSLK--DY 366
>gi|14042548|dbj|BAB55295.1| unnamed protein product [Homo sapiens]
Length = 238
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 60 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 119
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 120 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 171
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 172 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 194
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 195 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 228
>gi|355748814|gb|EHH53297.1| hypothetical protein EGM_13908 [Macaca fascicularis]
Length = 380
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E++ N+ ++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNRELAMTKLRAKLYSMHLEKEANK-------TQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRISKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|380813932|gb|AFE78840.1| peptide chain release factor 1-like, mitochondrial isoform a
[Macaca mulatta]
gi|383419361|gb|AFH32894.1| peptide chain release factor 1-like, mitochondrial isoform a
[Macaca mulatta]
Length = 380
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E++ N+ ++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNRELAMKKLRAKLYSMHLEKEANK-------TQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRISKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|355561966|gb|EHH18598.1| hypothetical protein EGK_15241 [Macaca mulatta]
Length = 380
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E++ N+ ++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNRELAMKKLRAKLYSMHLEKEANK-------TQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRISKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>gi|440909486|gb|ELR59390.1| Peptide chain release factor 1-like, mitochondrial [Bos grunniens
mutus]
Length = 380
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTITVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I ++++++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLK--DY 366
>gi|297291498|ref|XP_001095577.2| PREDICTED: mitochondrial translational release factor 1-like
isoform 2 [Macaca mulatta]
Length = 326
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 148 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 207
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E++ N+ ++AR I
Sbjct: 208 RIVHLPTGVVSECQQERSQLKNRELAMKKLRAKLYSMHLEKEANK-------TQNARKI- 259
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 260 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 282
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 283 HRISKTLHDLETFMQGDYLLDELVQSLKEYADYE 316
>gi|431904525|gb|ELK09907.1| Peptide chain release factor 1-like, mitochondrial [Pteropus
alecto]
Length = 378
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 200 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 259
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + SAR I
Sbjct: 260 RIVHLPTGVVSECQQERSQLKNREMAMKKLRARLYSMYLEEETSK-------RYSARKI- 311
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 312 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 336
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 337 INKSLHDLETFMQGEYLLDELVQSLKDYADYE 368
>gi|149038509|gb|EDL92839.1| rCG41113 [Rattus norvegicus]
Length = 384
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 133/218 (61%), Gaps = 45/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 206 VQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 265
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y ++ EE+ + + SAR I
Sbjct: 266 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRLEEETAK-------RYSARKI- 317
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + + T + +R+TDHR
Sbjct: 318 -------------------------------QVGTKGRS----EKIRTYNFPQNRVTDHR 342
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRIDQL 216
I ++++++ FM G +L +LI ++ + DY+ ++ +
Sbjct: 343 INKSLHDLESFMQGDCLLDDLIQSLKDYSDYESLVEMI 380
>gi|322801718|gb|EFZ22324.1| hypothetical protein SINV_03599 [Solenopsis invicta]
Length = 300
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 126/219 (57%), Gaps = 47/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE+ R+HTST SVA+LP P +I++ ++EKDLK+ETKR++GAGGQHVNTTDSAV
Sbjct: 116 VQRVPATERLSRVHTSTASVAILPVPSEIQIMINEKDLKIETKRSSGAGGQHVNTTDSAV 175
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+SV + RSQ KNR A+ KLK ++YE R + K+++ T
Sbjct: 176 RITHLPSGVSVTCEVHRSQDKNRKMAMDKLKSVLYE------------RQLNKQTSFTSE 223
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R + + FR K+ T + DR+TDHR+
Sbjct: 224 LRQKQMGMGFRNE------------------KIRTYNY------------NQDRVTDHRL 253
Query: 181 QR--TVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
+ T+YN+AEFM GG L EL + + H R+ LL
Sbjct: 254 GQNGTLYNLAEFMQGGEALEELENKLCNH---IRVKTLL 289
>gi|71043904|ref|NP_001020894.1| peptide chain release factor 1-like, mitochondrial precursor
[Rattus norvegicus]
gi|81907899|sp|Q4V7E5.1|RF1ML_RAT RecName: Full=Peptide chain release factor 1-like, mitochondrial;
AltName: Full=Mitochondrial translational release factor
1-like; Flags: Precursor
gi|66910900|gb|AAH97970.1| Mitochondrial translational release factor 1-like [Rattus
norvegicus]
Length = 373
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 133/218 (61%), Gaps = 45/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y ++ EE+ + + SAR I
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRLEEETAK-------RYSARKI- 306
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + + T + +R+TDHR
Sbjct: 307 -------------------------------QVGTKGRS----EKIRTYNFPQNRVTDHR 331
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRIDQL 216
I ++++++ FM G +L +LI ++ + DY+ ++ +
Sbjct: 332 INKSLHDLESFMQGDCLLDDLIQSLKDYSDYESLVEMI 369
>gi|354466938|ref|XP_003495928.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Cricetulus griseus]
gi|344239851|gb|EGV95954.1| Peptide chain release factor 1-like, mitochondrial [Cricetulus
griseus]
Length = 373
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 129/213 (60%), Gaps = 47/213 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTEKQGRIHTSTMTVAVLPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKR-SARTI 119
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ TKR +AR I
Sbjct: 255 RIVHLPTGVVSECQQERSQLKNRELAMKKLRARLYSMHLEEE--------TTKRYNARKI 306
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+V TK + + T + +R+TDH
Sbjct: 307 --------------------------------QVGTK----GRSEKIRTYNFPQNRVTDH 330
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
RI ++++++ FM G +L ++I ++ + DY+
Sbjct: 331 RINKSLHDLENFMQGDCLLDDMIQSLKDYADYE 363
>gi|296199479|ref|XP_002747187.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Callithrix jacchus]
Length = 382
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 128/214 (59%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ + +AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMKKLRAKLYSMHLEEETNK-------RDNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI ++++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRISKSLHDLQTFMQGDYLLDELVQSLKEYADYE 370
>gi|345784683|ref|XP_541157.3| PREDICTED: LOW QUALITY PROTEIN: mitochondrial translational release
factor 1-like [Canis lupus familiaris]
Length = 380
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 127/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL++ TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + SAR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSK-------RYSARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + T + +R+TDHR
Sbjct: 314 -------------------------------QVGTK----GRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLKDYADYE 370
>gi|114052078|ref|NP_001039843.1| peptide chain release factor 1-like, mitochondrial precursor [Bos
taurus]
gi|122135943|sp|Q2KI15.1|RF1ML_BOVIN RecName: Full=Peptide chain release factor 1-like, mitochondrial;
AltName: Full=Mitochondrial translational release factor
1-like; Flags: Precursor
gi|86826548|gb|AAI12807.1| Mitochondrial translational release factor 1-like [Bos taurus]
Length = 380
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I ++++++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLK--DY 366
>gi|296483896|tpg|DAA26011.1| TPA: peptide chain release factor 1-like, mitochondrial precursor
[Bos taurus]
Length = 380
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I ++++++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLK--DY 366
>gi|312375908|gb|EFR23156.1| hypothetical protein AND_13424 [Anopheles darlingi]
Length = 406
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 43/219 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGR+HTSTV+VA++P+P D EV L EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 225 VQRIPATEKSGRIHTSTVTVAIIPRPDDFEVDLKEKDLKIETKRASGAGGQHVNTTDSAV 284
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+VE Q +RSQ+KNR +AK ++L+ ++ +E E R+ K+S
Sbjct: 285 RIVHLPTGIAVECQTERSQVKNR--EIAK-QKLVAKLMQQELEARFASTQALKKSQVGQS 341
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R E K+ T + DRITDHRI
Sbjct: 342 LRNE---------------------------KIRTYNF------------NQDRITDHRI 362
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ TV+N+ F+ GG L ++I + + + + ++ +L+S
Sbjct: 363 EGGTVHNLKGFLEGGQQLDDMIDKLHRSERRKQLLELIS 401
>gi|444732465|gb|ELW72757.1| Peptide chain release factor 1-like, mitochondrial [Tupaia
chinensis]
Length = 349
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 44/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 167 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 226
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y +Q EE+ ++ + +AR I
Sbjct: 227 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMQLEEETSK-------RYNARKI- 278
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 279 -----------------------------------QIGTRGRSEKIRTYNFPQNRVTDHR 303
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I ++++++ FM G +L EL+ ++ +
Sbjct: 304 INKSLHDLETFMQGDYLLDELVQSLKDY 331
>gi|149744102|ref|XP_001501636.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Equus caballus]
Length = 380
Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 128/216 (59%), Gaps = 45/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++ + +AR +
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMHVEEETSK-------RYNARKV- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRID 214
I ++++++ FM G +L EL+ ++ + DY+ +D
Sbjct: 339 INKSLHDLETFMQGENLLDELVQSLKDYADYESLVD 374
>gi|350399160|ref|XP_003485437.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Bombus impatiens]
Length = 411
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 127/224 (56%), Gaps = 49/224 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGRLHTST V + P+PKD+++ +DEKDL +E+K+A+GAGGQHVNTTDSA+
Sbjct: 228 VQRIPATEKSGRLHTSTAVVIITPEPKDVDIKIDEKDLIIESKKASGAGGQHVNTTDSAI 287
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V Q +RSQIKN+ AL KLK +++E Q ++Q V + K + +
Sbjct: 288 RITHIPTGKVVTCQTNRSQIKNKQLALTKLKTILFEEQLDQQ-----VSFINKIRKKQMG 342
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R L+ E R + DRITDHRI
Sbjct: 343 SR----------------------------LRNEKIRTYNF---------NQDRITDHRI 365
Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFR-----IDQLLS 218
T++N+ EFM GA L E++ D D Q R I+++LS
Sbjct: 366 SNGTMHNLREFMENGADL-EILEDRLYKDMQPRATLEIIEEMLS 408
>gi|301613862|ref|XP_002936423.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Xenopus (Silurana) tropicalis]
Length = 420
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 43/211 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 235 VQRVPKTEKQGRIHTSTMTVAILPQPSEINLVINPKDLRIETKRASGAGGQHVNTTDSAV 294
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG+ E Q++RSQIKN+ A+ L+ +Y ++ EE+ ++ + +AR I
Sbjct: 295 RIVHIPTGVVSECQQERSQIKNKEKAMQVLRAKLYTMKLEEETSK-------RYNARKI- 346
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ + K+ T DR+TDHRI
Sbjct: 347 ----------------------QIGTRGRSEKIRT------------YNYPQDRVTDHRI 372
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
++++N+ F+ G +L +LI + ++ DY+
Sbjct: 373 GKSLHNIEGFLFGEELLDDLIQSLSEYADYE 403
>gi|426234973|ref|XP_004011466.1| PREDICTED: peptide chain release factor 1-like, mitochondrial [Ovis
aries]
Length = 380
Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 125/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++ + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPSEVNLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q E++ ++ + +AR I
Sbjct: 262 RVVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEKETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + DR+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQDRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I ++++++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLK--DY 366
>gi|348501415|ref|XP_003438265.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Oreochromis niloticus]
Length = 380
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 128/218 (58%), Gaps = 44/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 198 VQRVPKTEKQGRMHTSTMTVAVLPQPTEISFTINPKDLRIDTKRASGAGGQHVNTTDSAV 257
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ L+ +Y ++ EE+ +KR
Sbjct: 258 RIVHLPTGVVAECQQERSQLKNREKAMKSLRAKLYSMKLEEE--------TSKR------ 303
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
++ +++ TK + + T + S DRITDHR
Sbjct: 304 -------------------------YNQRKIQIGTK----GRSEKIRTYNFSQDRITDHR 334
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I T++++ F+ G +L E+ S +++ Q + +LL
Sbjct: 335 IGMTLHDLKSFLLGEDLLDEMNSSLQEFSSQEILMELL 372
>gi|380025333|ref|XP_003696429.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Apis florea]
Length = 331
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 124/214 (57%), Gaps = 44/214 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGRLHTST V +LP+PKD+++ ++EKDL +E+K+A+GAGGQHVNTTDSA+
Sbjct: 148 VQRIPATEKSGRLHTSTAVVTILPEPKDVDIKVEEKDLIIESKKASGAGGQHVNTTDSAI 207
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQIKN+ AL KLK ++Y +E+ N+ V + I
Sbjct: 208 RITHIPTGIVVTCQTNRSQIKNKQLALTKLKSMLY----QEELNKQV----------SFI 253
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
++ I R L+ E R + DR+TDHRI
Sbjct: 254 NQIRKKQIGKR-------------------LRNEKIRTYNF---------NQDRVTDHRI 285
Query: 181 QR-TVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
T++N+ EFM G L E++ D + Q +I
Sbjct: 286 LNGTIHNLKEFMKNGTAL-EILEDRLYKNMQSKI 318
>gi|292620387|ref|XP_002664272.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Danio rerio]
Length = 431
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/211 (40%), Positives = 120/211 (56%), Gaps = 44/211 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR HTST++VA+LPQP +I ++ KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 251 VQRVPKTESKGRTHTSTMTVAILPQPTEISFTINPKDLKIETKRASGAGGQHVNTTDSAV 310
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG E Q++RSQIKN+ A+ L+ +Y + EE+ +R
Sbjct: 311 RITHLPTGTVAECQQERSQIKNKDTAMKLLRAKLYSARLEEETSR--------------- 355
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ + L++ T+ + + T + DRITDHR
Sbjct: 356 ------------------------RYQARKLQIGTR----GRSEKIRTYNFQQDRITDHR 387
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I +TV++V F+ G +L E+I ++Q Q
Sbjct: 388 IGKTVHDVHGFLQGEELLEEMIVFLQQFSEQ 418
>gi|417399855|gb|JAA46912.1| Putative mitochondrial translational rele [Desmodus rotundus]
Length = 372
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 128/218 (58%), Gaps = 49/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 194 VQRVPKTEKHGRVHTSTMTVAVLPQPAKINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 253
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ++N+ A+ KL+ +Y + EE+ N+ + +AR I
Sbjct: 254 RIVHLPTGVVSECQQERSQMRNKEMAMKKLRAKLYSMYLEEETNK-------RYNARKI- 305
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 306 -------------------------------------QVGSKGRSEKIRTYNFPQNRVTD 328
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRID 214
HRI ++++++ FM G +L EL+ ++ + DY+ I+
Sbjct: 329 HRINKSLHDLETFMQGEYLLDELVQSLKDYADYESLIE 366
>gi|344264032|ref|XP_003404098.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
[Loxodonta africana]
Length = 380
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I + ++ KDL+++TKRATGAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTERQGRIHTSTMTVAILPQPTEISLVINPKDLRIDTKRATGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + E ++ + +AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMHLEAAASK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++++ DY+
Sbjct: 339 INKSLHDLEAFMQGEYLLDELVQSLKEYADYE 370
>gi|395850699|ref|XP_003797914.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 1 [Otolemur garnettii]
Length = 380
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 126/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VAVLPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTERQGRIHTSTMTVAVLPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ++NR A+ KL+ +Y + EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLRNREMAMKKLRAKLYSMHLEEEMSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 339 INKSLHDLETFMQGDYLLDELVQSLKDYADYE 370
>gi|30425080|ref|NP_780583.1| peptide chain release factor 1-like, mitochondrial precursor [Mus
musculus]
gi|81874010|sp|Q8BJU9.1|RF1ML_MOUSE RecName: Full=Peptide chain release factor 1-like, mitochondrial;
AltName: Full=Mitochondrial translational release factor
1-like; Flags: Precursor
gi|26347595|dbj|BAC37446.1| unnamed protein product [Mus musculus]
gi|74186873|dbj|BAE20502.1| unnamed protein product [Mus musculus]
gi|148671619|gb|EDL03566.1| mitochondrial translational release factor 1-like [Mus musculus]
Length = 373
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 131/218 (60%), Gaps = 45/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y + EE+ + + +AR I
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEETAK-------RYNARKI- 306
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + + T + +R+TDHR
Sbjct: 307 -------------------------------QVGTKGRS----EKIRTYNFPQNRVTDHR 331
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQ-HDYQFRIDQL 216
I ++++++ FM G +L ++I ++ DY+ ++ +
Sbjct: 332 INKSLHDLESFMQGDCLLDDMIQSLKDCSDYEALVEMI 369
>gi|156389000|ref|XP_001634780.1| predicted protein [Nematostella vectensis]
gi|156221867|gb|EDO42717.1| predicted protein [Nematostella vectensis]
Length = 273
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 42/208 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAVLPQP++++V + DLK++T RA+GAGGQHVNTTDSAV
Sbjct: 89 VQRVPVTEAQGRVHTSTMTVAVLPQPQEVDVIISPNDLKIDTFRASGAGGQHVNTTDSAV 148
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+G+ V SQE+RSQ KN+A A+ L+ +Y++Q +E + SAR
Sbjct: 149 RITHIPSGMVVSSQEERSQFKNKAKAMQVLRARLYDLQRQEAD-----------SARVHA 197
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
RT+ + E+ K+ T R+TDHRI
Sbjct: 198 RRTQ-------------------IGTAERSEKIRTYNFPQG------------RVTDHRI 226
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHD 208
T + V +F+ GG +L ++I +R D
Sbjct: 227 GMTSHTVDKFLEGGVLLEDMIDALRVQD 254
>gi|395850701|ref|XP_003797915.1| PREDICTED: peptide chain release factor 1-like, mitochondrial
isoform 2 [Otolemur garnettii]
Length = 344
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VAVLPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRVPKTERQGRIHTSTMTVAVLPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ++NR A+ KL+ +Y + EE+ + + +AR I
Sbjct: 226 RIVHLPTGVVSECQQERSQLRNREMAMKKLRAKLYSMHLEEE-------MSKRYNARKI- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 278 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 302
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I ++++++ FM G +L EL+ ++ + DY+
Sbjct: 303 INKSLHDLETFMQGDYLLDELVQSLKDYADYE 334
>gi|432903086|ref|XP_004077084.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like
[Oryzias latipes]
Length = 343
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 123/207 (59%), Gaps = 44/207 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VAVLPQP +I +++KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 161 VQRVPKTEKQGRMHTSTMTVAVLPQPTEISFTINQKDLRIDTKRASGAGGQHVNTTDSAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KNR A+ L+ +Y ++ EE+ +KR
Sbjct: 221 RIVHLPTGVVAECQQERSQLKNREKAMKALRAKLYSMKLEEE--------TSKR------ 266
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
++ ++V TK + + T + DRITDHR
Sbjct: 267 -------------------------YNQRKIQVGTK----GRSEKIRTYNFQQDRITDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQ 206
I TV++V F+ G +L ++ S +++
Sbjct: 298 ISITVHDVKSFLLGEDLLEDMNSLLQE 324
>gi|195116636|ref|XP_002002858.1| GI17608 [Drosophila mojavensis]
gi|193913433|gb|EDW12300.1| GI17608 [Drosophila mojavensis]
Length = 393
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 44/203 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P D++V + E+DLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 203 VQRVPATEKSGRIHTSTASITVIPRPADVQVQIAERDLKIETKRASGAGGQHVNTTDSAV 262
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+P+G++VESQ +RSQ+KNR AL +L+ + Q + E + T+++ + +
Sbjct: 263 RIVHLPSGLAVESQSERSQLKNREVALKRLQAKLIHQQLQSAE---ATKKATRKAQQGNL 319
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+R E K+ T DR+TDHR+
Sbjct: 320 NRNE---------------------------KIRTYNFV------------QDRVTDHRV 340
Query: 181 QR--TVYNVAEFMSGGAMLHELI 201
Q+ T++N+ F+ GG L LI
Sbjct: 341 QQGGTLHNLPGFLEGGQQLSGLI 363
>gi|291397162|ref|XP_002714988.1| PREDICTED: mitochondrial translational release factor 1-like
[Oryctolagus cuniculus]
Length = 380
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 123/208 (59%), Gaps = 44/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTERQGRIHTSTMTVAILPQPTEINLVVNPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL +Y + EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNREMAMKKLCAKLYSMHLEEETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + T + +R+TDHR
Sbjct: 314 -------------------------------QVGTK----GRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I ++V+++ FM G L E+I ++ +
Sbjct: 339 INKSVHDLEAFMKGDYQLDEMIQSLKDY 366
>gi|443717918|gb|ELU08755.1| hypothetical protein CAPTEDRAFT_144713, partial [Capitella teleta]
Length = 275
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 118/206 (57%), Gaps = 42/206 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEKSGR+HTSTVSVAVLPQP +IEV++ KDL+++T RA GAGGQHVN TDSAV
Sbjct: 90 VQRVPKTEKSGRVHTSTVSVAVLPQPDEIEVNISPKDLRIDTFRAGGAGGQHVNKTDSAV 149
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ ESQE RSQ N+ NA+ LK +YE + Q + ++ S+R +
Sbjct: 150 RVTHLPTGMMAESQESRSQHHNKDNAMRILKTRMYEQILDAQ-------ISSQHSSRKL- 201
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ S + + + + DR+TDHR+
Sbjct: 202 ---------------QIGSKSRSEKMRTYNFQ-------------------QDRVTDHRV 227
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQ 206
++ + FM GG +L +L+ +++
Sbjct: 228 GLNLFGIDRFMEGGEVLDDLLHQLKE 253
>gi|357618422|gb|EHJ71406.1| mitochondrial translational release factor 1 [Danaus plexippus]
Length = 355
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 84/102 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEK GR+HTSTVSVAVLPQ DIE+++ ++DL +ETKRA+GAGGQHVNTTDSAV
Sbjct: 166 VQRIPATEKGGRIHTSTVSVAVLPQATDIEINIADRDLNIETKRASGAGGQHVNTTDSAV 225
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTG VE QE RSQIKNR A+ KLK L+ + Q E Q
Sbjct: 226 RITHLPTGTVVECQEGRSQIKNREIAMQKLKTLLLQKQEEAQ 267
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+++ ++DL +ETKRA+GAGGQHVNTTDSA RIT
Sbjct: 196 INIADRDLNIETKRASGAGGQHVNTTDSAVRIT 228
>gi|114052118|ref|NP_001040455.1| mitochondrial translational release factor 1 [Bombyx mori]
gi|95102962|gb|ABF51422.1| mitochondrial translational release factor 1 [Bombyx mori]
Length = 401
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 117/202 (57%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEK GR+HTSTV+VA+LPQP +IE+++ E+D+ +ETKRA+GAGGQHVNTTDSAV
Sbjct: 211 VQRIPATEKGGRIHTSTVTVAILPQPSEIELNIPERDVVIETKRASGAGGQHVNTTDSAV 270
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H PTG +VE QE RSQIKN+ A+ KL+ L+ E Q +EQ ++L ++R ++
Sbjct: 271 RLIHTPTGTTVECQEGRSQIKNKQIAMQKLRTLLLEKQIQEQ----ALKLQSERKSQV-- 324
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+G + + T + DR+T+HR
Sbjct: 325 -------------------------------------GSGNRNEKIRTYNFPQDRVTEHR 347
Query: 180 -IQRTVYNVAEFMSGGAMLHEL 200
T +N+ FM GG L +L
Sbjct: 348 DGGGTFHNLKGFMEGGEQLEQL 369
>gi|340370778|ref|XP_003383923.1| PREDICTED: hypothetical protein LOC100636524 [Amphimedon
queenslandica]
Length = 602
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 121/208 (58%), Gaps = 44/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P T R+HTST++VA+LP P +++ +++EKDLK+ET RA+GAGGQHVNTTDSAV
Sbjct: 425 VQRIPATVSRDRMHTSTITVAILPLPTEVQSNINEKDLKIETFRASGAGGQHVNTTDSAV 484
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q++RSQ +N++ AL LK +Y E++ R V AR
Sbjct: 485 RLTHIPTGITVSIQDERSQHRNKSKALKLLKARLY----EKERMR-----VNDERAR--- 532
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
R E + TG + + T + DRITDHR
Sbjct: 533 QRME-------------------------------QIGTGERHERIRTYNFLQDRITDHR 561
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I TV++V +FMSG +LHE+ ++QH
Sbjct: 562 IGYTVHSVTDFMSGTELLHEMTEALQQH 589
>gi|297304301|ref|XP_001086824.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like,
partial [Macaca mulatta]
Length = 346
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 127/212 (59%), Gaps = 45/212 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKT+K GR+HTST++VA+LPQP +I + ++ KDL+++TK+A+GAGGQHVNTTDSAV
Sbjct: 168 VQRVPKTQKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKQASGAGGQHVNTTDSAV 227
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PT + + Q++RSQ+KNR A+ KL+ +Y + E++ N+ +++AR I
Sbjct: 228 RIVHLPTSVVSKCQQERSQLKNRELAMTKLRAKLYSMHLEKETNK-------RQNARKI- 279
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ + + + T + +R+TDHR
Sbjct: 280 -----------------------------------RIGSKGRSEKIRTYNFPQNRVTDHR 304
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
I +T++++ FM G +L EL+ ++++ DY+
Sbjct: 305 ISKTLHDLETFMQGDDLLDELVQSLKEYADYE 336
>gi|449664016|ref|XP_002163029.2| PREDICTED: peptide chain release factor 1-like [Hydra
magnipapillata]
Length = 323
Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 121/212 (57%), Gaps = 50/212 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLPQP+ I+V L+ KD+KV+T R++GAGGQHVNTTDSAV
Sbjct: 141 VQRVPITESLGRVHTSTVTVAVLPQPESIDVVLNMKDVKVDTFRSSGAGGQHVNTTDSAV 200
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+G+ V Q RSQI+N++ AL L +Y+ FE R+V +R
Sbjct: 201 RLTHIPSGLVVAVQSQRSQIENKSRALKILSAQLYD--FER------TRVVQER------ 246
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKR---ATGAGGQHVNTTD-SADRIT 176
VE +R +G + + T + DRIT
Sbjct: 247 --------------------------------VELRRTQIGSGHRSERIRTYNFPQDRIT 274
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
DHRI T+ +++FM GG+ H+L+ +R H+
Sbjct: 275 DHRIGETLSGLSDFMLGGSTFHKLVDMLRSHE 306
>gi|158300562|ref|XP_320450.4| AGAP012078-PA [Anopheles gambiae str. PEST]
gi|157013219|gb|EAA00316.4| AGAP012078-PA [Anopheles gambiae str. PEST]
Length = 760
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 116/206 (56%), Gaps = 43/206 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGR+HTSTV+V+++P+P D +V L EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 579 VQRIPATEKSGRIHTSTVTVSIIPRPDDFQVELKEKDLKIETKRASGAGGQHVNTTDSAV 638
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+VE Q +RSQ KNR A KL + +I+ E R+ K+S
Sbjct: 639 RIVHLPTGIAVECQTERSQQKNREIAKQKLTAKLMQIELEA---RFSSTQALKKSQVGQS 695
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R E K+ T + DRITDHRI
Sbjct: 696 LRNE---------------------------KIRTYNF------------NQDRITDHRI 716
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIR 205
+ T +N+ F+ GG L ++I +R
Sbjct: 717 EGGTAHNLKGFLEGGEQLDDMIEKLR 742
>gi|119625009|gb|EAX04604.1| hCG2025689 [Homo sapiens]
Length = 238
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 124/210 (59%), Gaps = 48/210 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK G +HTST++VA+LPQP +I + ++ KDL+++TKRA+GAG QHVNTTDSAV
Sbjct: 60 VQRVPKTEKQGCVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGEQHVNTTDSAV 119
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 120 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHVEEEINK-------RQNARKI- 171
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 172 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 194
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
HRI +T++++ FM G +L EL+ ++++
Sbjct: 195 HRINKTLHDLETFMQGDYLLDELVQSLKEY 224
>gi|374587364|ref|ZP_09660456.1| bacterial peptide chain release factor 1 (bRF-1) [Leptonema illini
DSM 21528]
gi|373876225|gb|EHQ08219.1| bacterial peptide chain release factor 1 (bRF-1) [Leptonema illini
DSM 21528]
Length = 364
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 127/217 (58%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+ ++ EV LDEKDL+V+ RA+GAGGQHVN T+SAV
Sbjct: 187 VQRIPATESQGRIHTSAVTVAVLPEAEEDEVELDEKDLRVDVYRASGAGGQHVNKTESAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ KNRA A+ L+ + ++ E+E R
Sbjct: 247 RLTHIPTGLVVTCQDERSQHKNRAKAMKVLRSRLKQM---EEETR--------------- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E DLK +++ TG + + T + R+TDHR
Sbjct: 289 ------------------------HKEMADLK-KSQVKTGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
+ T+YN+AEFM G ++E++ + +H+ + +++QL
Sbjct: 324 VGVTLYNLAEFMEGN--MNEILEALVRHEKEEQLEQL 358
>gi|313672261|ref|YP_004050372.1| peptide chain release factor 1 [Calditerrivibrio nitroreducens DSM
19672]
gi|312939017|gb|ADR18209.1| bacterial peptide chain release factor 1 (bRF-1) [Calditerrivibrio
nitroreducens DSM 19672]
Length = 356
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 118/209 (56%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE SGR+HTS +VAV+P+ D++VH+D KDL+++ R++GAGGQHVNTTDSAV
Sbjct: 183 VQRIPETESSGRIHTSACTVAVIPEADDVDVHIDPKDLRIDVYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQIKN+ A+ LK I+E++ E Q
Sbjct: 243 RITHIPTGIVVSCQDERSQIKNKEKAMKLLKSKIFEMELERQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RTE E + +V +G + + T + +R+TDHR
Sbjct: 285 -RTEQA--------------------ENRKQQV----GSGDRSERIRTYNFPQNRLTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I TVYN+ M G L E+I + +D
Sbjct: 320 INLTVYNLDMVMEG--ELDEIIDALITYD 346
>gi|158300556|ref|XP_320444.4| AGAP012082-PA [Anopheles gambiae str. PEST]
gi|157013216|gb|EAA00433.4| AGAP012082-PA [Anopheles gambiae str. PEST]
Length = 384
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 82/100 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGR+HTSTV+V+++P+P D +V L EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 203 VQRIPATEKSGRIHTSTVTVSIIPRPDDFQVELKEKDLKIETKRASGAGGQHVNTTDSAV 262
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+ H+PTGI+VE Q +RSQ KNR A KL + +I+ E
Sbjct: 263 RIVHLPTGIAVECQTERSQQKNREIAKQKLTAKLMQIELE 302
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/32 (84%), Positives = 30/32 (93%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V L+EKDLK+ETKRA+GAGGQHVNTTDSA RI
Sbjct: 233 VELKEKDLKIETKRASGAGGQHVNTTDSAVRI 264
>gi|189485187|ref|YP_001956128.1| peptide chain release factor 1 [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|238054475|sp|B1GZI5.1|RF1_UNCTG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|170287146|dbj|BAG13667.1| peptide chain release factor 1 [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 356
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 50/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ ++++V + +DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPETEASGRVHTSAATVAVLPEAEEVDVEIKMEDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q++RSQIKNRA A L+ IYE + E E R
Sbjct: 243 RITHLPTGLVVACQDERSQIKNRAKAFKVLRAKIYEQRILEHEMR--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L E K+ G+G + + T + +RITD
Sbjct: 288 ------------------------------LSSERKQQIGSGDRSEKIRTYNFPQNRITD 317
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQ 215
HRI +VYN+ E M G L EL++ + + D + ++ +
Sbjct: 318 HRIGYSVYNITEVMDGN--LSELVNKLIKADIESKLKE 353
>gi|301617313|ref|XP_002938091.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1,
mitochondrial-like [Xenopus (Silurana) tropicalis]
Length = 446
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 122/210 (58%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T++V VLPQP ++EV +D KDL+++T R+ GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMTVIVLPQPDEVEVKIDSKDLRIDTFRSKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTGI+VE Q++RSQI N+ AL L+ +YE Q EQE L+ +RSAR
Sbjct: 320 SAVRIVHIPTGIAVECQQERSQIANKEKALRILRMRLYE-QTVEQE------LLERRSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
L+V T+ A + + T + + DR+T
Sbjct: 373 --------------------------------KLQVGTR----AQSERIRTYNFTQDRLT 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF++G +L +LI +++
Sbjct: 397 DHRIHYEVRNIKEFLNGEELLDDLIQKLQE 426
>gi|405963470|gb|EKC29040.1| Peptide chain release factor 1-like, mitochondrial [Crassostrea
gigas]
Length = 332
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 44/207 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST++V++LPQP+++ + +D DL+VET RA+GAGGQHVN TDSAV
Sbjct: 144 VQRVPKTESGGRIHTSTITVSILPQPEEVNITIDPNDLRVETFRASGAGGQHVNKTDSAV 203
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ HIPTG+ ESQ ++SQ N+ + + ++ +Y+I+F++Q
Sbjct: 204 RIIHIPTGVRAESQIEKSQHSNKVHCMKAIQERLYQIEFDKQ------------------ 245
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
LEE + + T + + + T + DR+TDHR
Sbjct: 246 -------------------------LEESQRFRKIQVGTASRSEKIRTYNFPQDRVTDHR 280
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQ 206
I + N+ +F++GG L +++ I++
Sbjct: 281 IHYSTNNIQQFLNGGEPLLNMMAVIQE 307
>gi|241998776|ref|XP_002434031.1| protein releasing factor, putative [Ixodes scapularis]
gi|215495790|gb|EEC05431.1| protein releasing factor, putative [Ixodes scapularis]
Length = 356
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 121/202 (59%), Gaps = 44/202 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE++GR+HTST++VAVLP P +++V L+ KDL ++TKRA+G GGQHVNTT+SAV
Sbjct: 178 VQRVPQTERAGRIHTSTMAVAVLPLPAEVDVVLNSKDLVMKTKRASGPGGQHVNTTESAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
++ HIP+GI VES ++RSQ++N+ AL KL+ +YEI+ ++
Sbjct: 238 QIQHIPSGIMVESSQERSQLQNKELALKKLRAKLYEIELNKK------------------ 279
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+ H+ ++ L+V T+ + + T + A DR+TDHR
Sbjct: 280 ---------------------TSSHVTQRKLQVGTR----GRSEKIRTYNFAQDRVTDHR 314
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I TV+NV +F+ G L +I
Sbjct: 315 IPVTVHNVEDFLHGQDNLDSVI 336
>gi|160902302|ref|YP_001567883.1| peptide chain release factor 1 [Petrotoga mobilis SJ95]
gi|160359946|gb|ABX31560.1| peptide chain release factor 1 [Petrotoga mobilis SJ95]
Length = 356
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 121/216 (56%), Gaps = 44/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ DI+V ++E DL+++T RA+GAGGQ+VN TDSAV
Sbjct: 183 VQRVPQTESSGRIHTSTATVAVLPEATDIDVQINENDLRIDTYRASGAGGQYVNKTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ AL L+ ++EI+ EEQ++ +L +R ++
Sbjct: 243 RITHLPTGIVVTCQNERSQHQNKEKALNILRAKLFEIKLEEQQS----QLTQERKSQIGT 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ I + P +R+TDHRI
Sbjct: 299 AQRSEKIRTYNFP--------------------------------------QNRVTDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
Q T + + E + G L E+I + + D + +++ L
Sbjct: 321 QYTTHRINEILDGD--LDEIIDKLLEKDLKEKLESL 354
>gi|19704667|ref|NP_604229.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|22096034|sp|Q8R5W0.1|RF1_FUSNN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|19714975|gb|AAL95528.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 365
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +DI EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 191 VQRVPKTEASGRIHTSTATVAVLPEVEDIQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 250
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 251 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 294 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 327
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 328 RIKLTVHQLEAFLDGDIDEMIDALIT 353
>gi|34763568|ref|ZP_00144503.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|237742325|ref|ZP_04572806.1| peptide chain release factor 1 [Fusobacterium sp. 4_1_13]
gi|256845604|ref|ZP_05551062.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_36A2]
gi|294785107|ref|ZP_06750395.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_27]
gi|421145503|ref|ZP_15605369.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27886757|gb|EAA23895.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
gi|229429973|gb|EEO40185.1| peptide chain release factor 1 [Fusobacterium sp. 4_1_13]
gi|256719163|gb|EEU32718.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_36A2]
gi|294486821|gb|EFG34183.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_27]
gi|395488089|gb|EJG08978.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 357
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T RA GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRAGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|296327945|ref|ZP_06870480.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296154901|gb|EFG95683.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 365
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +DI EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 191 VQRVPKTEASGRIHTSTATVAVLPEVEDIQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 250
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 251 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 294 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 327
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 328 RIKLTVHQLEAFLDGDIDEMIDALIT 353
>gi|365873556|ref|ZP_09413089.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
gi|363983643|gb|EHM09850.1| peptide chain release factor 1 [Thermanaerovibrio velox DSM 12556]
Length = 357
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE SGR+HTST +VAVLP+ +D++V + +DLK++T RA+GAGGQ+VN TDSAV
Sbjct: 184 VQRIPATEASGRIHTSTATVAVLPEAEDVDVQVRPEDLKIDTYRASGAGGQYVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ+KNRA A+ L+ +Y+++ + Q+ ++ +R +
Sbjct: 244 RITHIPTGLVVTCQDERSQLKNRAKAMQLLRARLYDMELQRQQ----AQMAAERKGQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
TG + + T + +R+TDHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNYPQNRLTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + + + G L+ELI +R D
Sbjct: 321 IGFTLYKLDQVLDGD--LYELIEALRMAD 347
>gi|157134367|ref|XP_001663262.1| mitochondrial peptide chain release factor [Aedes aegypti]
gi|108870516|gb|EAT34741.1| AAEL013058-PA [Aedes aegypti]
Length = 422
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 121/206 (58%), Gaps = 43/206 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKS R+HTST +V+V+P+P + E+ L +KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 240 VQRVPTTEKSARIHTSTATVSVIPRPDEFEIELKDKDLKIETKRASGAGGQHVNTTDSAV 299
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE Q +RSQ+KN+ +AK ++L+ ++ +E E+++ K+S
Sbjct: 300 RIVHLPTGMAVECQTERSQVKNK--EIAK-QKLLAKLTQQELESKFNATQSMKKSQVGSS 356
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R E K+ T + DRITDHR+
Sbjct: 357 LRNE---------------------------KIRTYNY------------NQDRITDHRV 377
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIR 205
T +N+ F+ GG+ L ++I+ ++
Sbjct: 378 DGGTTHNLKAFLEGGSQLEDMIAKLQ 403
>gi|422317035|ref|ZP_16398404.1| peptide chain release factor 1 [Fusobacterium periodonticum D10]
gi|404590306|gb|EKA92753.1| peptide chain release factor 1 [Fusobacterium periodonticum D10]
Length = 357
Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVRVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|294782570|ref|ZP_06747896.1| peptide chain release factor 1 [Fusobacterium sp. 1_1_41FAA]
gi|294481211|gb|EFG28986.1| peptide chain release factor 1 [Fusobacterium sp. 1_1_41FAA]
Length = 357
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +DI EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDIQEVIVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|269121056|ref|YP_003309233.1| peptide chain release factor 1 [Sebaldella termitidis ATCC 33386]
gi|268614934|gb|ACZ09302.1| peptide chain release factor 1 [Sebaldella termitidis ATCC 33386]
Length = 359
Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ D+ +V ++ DLKV+T RA+GAGGQHVNTTDSA
Sbjct: 183 VQRVPDTESSGRIHTSTITVAVLPEIDDVSQVEINPGDLKVDTYRASGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+THIPTGI V SQ++RSQ+KNR A+ L IYE++ EEQ
Sbjct: 243 VRITHIPTGIVVTSQDERSQLKNRERAMKVLASKIYEMEVEEQ 285
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 134 CTTLP--SSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP V + DLKV+T RA+GAGGQHVNTTDSA RIT
Sbjct: 202 VAVLPEIDDVSQVEINPGDLKVDTYRASGAGGQHVNTTDSAVRIT 246
>gi|421526788|ref|ZP_15973394.1| peptide chain release factor 1 [Fusobacterium nucleatum ChDC F128]
gi|402256896|gb|EJU07372.1| peptide chain release factor 1 [Fusobacterium nucleatum ChDC F128]
Length = 357
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|169824785|ref|YP_001692396.1| peptide chain release factor 1 [Finegoldia magna ATCC 29328]
gi|303235021|ref|ZP_07321645.1| peptide chain release factor 1 [Finegoldia magna BVS033A4]
gi|417926484|ref|ZP_12569883.1| peptide chain release factor 1 [Finegoldia magna
SY403409CC001050417]
gi|238687758|sp|B0S2B6.1|RF1_FINM2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|167831590|dbj|BAG08506.1| bacterial peptide chain release factor 1 [Finegoldia magna ATCC
29328]
gi|302493876|gb|EFL53658.1| peptide chain release factor 1 [Finegoldia magna BVS033A4]
gi|341589334|gb|EGS32616.1| peptide chain release factor 1 [Finegoldia magna
SY403409CC001050417]
Length = 355
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D++V +++KDL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ LK +Y++ EE++N+ + AR
Sbjct: 243 RITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLYDL-MEEEKNK------DRADAR--- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + RITDHR
Sbjct: 293 ---------------------------------KSQVGTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I +T++ + F+ G + E+I D+ +D
Sbjct: 320 INKTIFQLQNFLDGD--IEEMIDDLTSYD 346
>gi|297588765|ref|ZP_06947408.1| peptide chain release factor RF1 [Finegoldia magna ATCC 53516]
gi|297574138|gb|EFH92859.1| peptide chain release factor RF1 [Finegoldia magna ATCC 53516]
Length = 355
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D++V +++KDL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ LK +Y++ EE++N+ + AR
Sbjct: 243 RITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLYDL-MEEEKNK------DRADAR--- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + RITDHR
Sbjct: 293 ---------------------------------KSQVGTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I +T++ + F+ G + E+I D+ +D
Sbjct: 320 INKTIFQLQNFLDGD--IEEMIDDLTSYD 346
>gi|254302818|ref|ZP_04970176.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|422338364|ref|ZP_16419324.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|148323010|gb|EDK88260.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|355372280|gb|EHG19621.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 357
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|237744127|ref|ZP_04574608.1| peptide chain release factor 1 [Fusobacterium sp. 7_1]
gi|289765720|ref|ZP_06525098.1| bacterial Peptide Chain Release Factor 1 [Fusobacterium sp. D11]
gi|336401307|ref|ZP_08582078.1| peptide chain release factor 1 [Fusobacterium sp. 21_1A]
gi|229431356|gb|EEO41568.1| peptide chain release factor 1 [Fusobacterium sp. 7_1]
gi|289717275|gb|EFD81287.1| bacterial Peptide Chain Release Factor 1 [Fusobacterium sp. D11]
gi|336161217|gb|EGN64224.1| peptide chain release factor 1 [Fusobacterium sp. 21_1A]
Length = 357
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|340752555|ref|ZP_08689354.1| peptide chain release factor 1 [Fusobacterium sp. 2_1_31]
gi|229422353|gb|EEO37400.1| peptide chain release factor 1 [Fusobacterium sp. 2_1_31]
Length = 357
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|196013797|ref|XP_002116759.1| hypothetical protein TRIADDRAFT_31311 [Trichoplax adhaerens]
gi|190580737|gb|EDV20818.1| hypothetical protein TRIADDRAFT_31311 [Trichoplax adhaerens]
Length = 271
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VA+LPQP++I++ +++ D+K +T RA GAGGQHVNTTDSAV
Sbjct: 85 VQRVPITESDGRVHTSTATVAILPQPEEIDIVINKNDIKFDTFRAQGAGGQHVNTTDSAV 144
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V QE++SQ +N+A A+ L+ +++ Q Q+N+ T R
Sbjct: 145 RLTHIPTGMIVAVQEEKSQHRNKAKAIQILQAKLFDEQ--RQQNQ------TDR------ 190
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
VH + + TGA + + T + DRITDHR
Sbjct: 191 -----------------------VHARRQQI------GTGARSERIRTYNYQQDRITDHR 221
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I ++Y + +F+SG L+ L+S +
Sbjct: 222 INMSLYGIDDFLSGNESLNHLMSSL 246
>gi|325294472|ref|YP_004280986.1| peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064920|gb|ADY72927.1| Peptide chain release factor 1 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 361
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 54/221 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS +VA+LP+ +++++H+DEKDLK++T R++GAGGQHVNTTDSAV
Sbjct: 187 VQRIPVTESGGRIHTSAATVAILPEAEEVDIHIDEKDLKIDTYRSSGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRSA 116
R+THIPTGI V +RSQI+NR A+ A+LK L YE Q +EQ + SA
Sbjct: 247 RITHIPTGIVVTCSNERSQIQNRIKAMKILRARLKEL-YERQQKEQLD----------SA 295
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
R ++ +G + + T + +R+
Sbjct: 296 R------------------------------------RSQIGSGDRSEKIRTYNFPENRV 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
TDHRI+ T+YN+ EF+ G L E+I + + +I+ L
Sbjct: 320 TDHRIKLTLYNLEEFLDG--ELDEMIDALTAAEQAEKIEAL 358
>gi|157133587|ref|XP_001656262.1| mitochondrial peptide chain release factor [Aedes aegypti]
gi|108870765|gb|EAT34990.1| AAEL012811-PA [Aedes aegypti]
Length = 422
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 120/206 (58%), Gaps = 43/206 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKS R+HTST +V+V+P+P + E+ L +KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 240 VQRVPTTEKSARIHTSTATVSVIPRPDEFEIELKDKDLKIETKRASGAGGQHVNTTDSAV 299
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE Q +RSQ+KN+ +AK ++L+ ++ +E E+++ K+S
Sbjct: 300 RIVHLPTGMAVECQTERSQVKNK--EIAK-QKLLAKLTQQELESKFNATQSMKKSQVGSS 356
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R E K+ T + DRITDHR+
Sbjct: 357 LRNE---------------------------KIRTYNY------------NQDRITDHRV 377
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIR 205
T +N+ F+ GG L ++I+ ++
Sbjct: 378 DGGTTHNLKAFLEGGPQLEDMIAKLQ 403
>gi|422933302|ref|ZP_16966224.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339891248|gb|EGQ80255.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 327
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 153 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 212
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 213 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 255
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 256 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 289
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 290 RIKLTVHQLEAFLDGDIDEMIDALIT 315
>gi|336418716|ref|ZP_08598988.1| peptide chain release factor 1 [Fusobacterium sp. 11_3_2]
gi|423137074|ref|ZP_17124717.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
animalis F0419]
gi|336164393|gb|EGN67300.1| peptide chain release factor 1 [Fusobacterium sp. 11_3_2]
gi|371961141|gb|EHO78784.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 357
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|291288202|ref|YP_003505018.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM
12809]
gi|290885362|gb|ADD69062.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM
12809]
Length = 356
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 85/104 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D++VH+++KDL+++ RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSACTVAVLPEAEDVDVHIEQKDLRIDVFRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
RMTHIPTG+ V Q++RSQIKNR A+ LK I E + +++++
Sbjct: 243 RMTHIPTGVVVSCQDERSQIKNREKAMKLLKSKILEAEIQKKQS 286
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%), Gaps = 3/46 (6%)
Query: 134 CTT--LPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
CT LP + VH+E+KDL+++ RA+GAGGQHVNTTDSA R+T
Sbjct: 200 CTVAVLPEAEDVDVHIEQKDLRIDVFRASGAGGQHVNTTDSAVRMT 245
>gi|262068281|ref|ZP_06027893.1| peptide chain release factor 1 [Fusobacterium periodonticum ATCC
33693]
gi|291378019|gb|EFE85537.1| peptide chain release factor 1 [Fusobacterium periodonticum ATCC
33693]
Length = 357
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|260494288|ref|ZP_05814419.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_33]
gi|260198434|gb|EEW95950.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_33]
Length = 357
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 286 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 320 RIKLTVHQLEAFLDGDIDEMIDALIT 345
>gi|170070084|ref|XP_001869460.1| peptide chain release factor 1 [Culex quinquefasciatus]
gi|167866004|gb|EDS29387.1| peptide chain release factor 1 [Culex quinquefasciatus]
Length = 425
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 120/207 (57%), Gaps = 43/207 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKS R+HTST +V+VLP+P + ++ L +KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 243 VQRIPSTEKSARIHTSTATVSVLPRPDEFQIELKDKDLKIETKRASGAGGQHVNTTDSAV 302
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE Q +RSQ KN+ +AK ++L+ ++ +E E+++ + K+S
Sbjct: 303 RIVHLPTGMAVECQTERSQGKNK--EIAK-QKLLAKLTQQELESKFNAKQSLKKSQVGSS 359
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R E I + P DRITDHR+
Sbjct: 360 TRNEK-IRTYNYP--------------------------------------QDRITDHRL 380
Query: 181 Q-RTVYNVAEFMSGGAMLHELISDIRQ 206
+ T +N+ FM GG L +++ +R+
Sbjct: 381 EGGTTHNLKVFMEGGPPLGDMVEKLRK 407
>gi|418323304|ref|ZP_12934585.1| peptide chain release factor 1 [Staphylococcus pettenkoferi VCU012]
gi|365229951|gb|EHM71075.1| peptide chain release factor 1 [Staphylococcus pettenkoferi VCU012]
Length = 359
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 86/106 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+EV + +D+K++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEVEIRNEDIKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH PTG V SQ+++SQIKNR A+ LK +Y+++ +E+E ++
Sbjct: 243 RITHTPTGTVVTSQDEKSQIKNREKAMKVLKARVYDMKVQEEEEKY 288
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +D+K++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 VEIRNEDIKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|340750022|ref|ZP_08686869.1| peptide chain release factor 1 [Fusobacterium mortiferum ATCC 9817]
gi|229419665|gb|EEO34712.1| peptide chain release factor 1 [Fusobacterium mortiferum ATCC 9817]
Length = 358
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE +GR+HTST +VAVLP+ +D+ EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPKDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q +
Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLVSKLYEMECEKQRS--------------- 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+ ES E+ L+V TG + + T + RITDH
Sbjct: 288 --QVES----------------------ERKLQV----GTGDRSEKIRTYNFPQGRITDH 319
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TVY + F+ G M+ LI+
Sbjct: 320 RIKFTVYQLDAFLDGDIDEMIDALIT 345
>gi|262038076|ref|ZP_06011481.1| peptide chain release factor 1 [Leptotrichia goodfellowii F0264]
gi|261747896|gb|EEY35330.1| peptide chain release factor 1 [Leptotrichia goodfellowii F0264]
Length = 359
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 86/103 (83%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ +D+ EV +++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPATEASGRIHTSTITVAVLPEIEDVNEVEINQSDLKIDTYRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH+PTG+ V SQ+ RSQIKNR A+ L +YE+++E+Q
Sbjct: 243 VRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQ 285
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 214 VEINQSDLKIDTYRSSGAGGQHVNTTDSAVRIT 246
>gi|302380176|ref|ZP_07268648.1| peptide chain release factor 1 [Finegoldia magna ACS-171-V-Col3]
gi|302311959|gb|EFK93968.1| peptide chain release factor 1 [Finegoldia magna ACS-171-V-Col3]
Length = 355
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 121/209 (57%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D++V +++KDL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ LK ++++ EE++N+ + AR
Sbjct: 243 RITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLFDL-MEEEKNK------DRADAR--- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + RITDHR
Sbjct: 293 ---------------------------------KSQVGTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I +T++ + F+ G + E+I D+ +D
Sbjct: 320 INKTIFQLQNFLDGD--IEEMIDDLTSYD 346
>gi|384498061|gb|EIE88552.1| hypothetical protein RO3G_13263 [Rhizopus delemar RA 99-880]
Length = 360
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 121/208 (58%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
+RVP TE GR+HTSTV+VA+LPQP +++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 188 FKRVPATESQGRIHTSTVTVAILPQPTEVQVQIRDSDLKIDVYRASGAGGQHVNTTDSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ KN+ AL L+ IY EQE R+ T++S R
Sbjct: 248 RITHIPTGLVVAMQDERSQHKNKQKALKVLRAKIY-----EQE-----RIKTEKSRR--- 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ ++ ++ TG + + T + +R+TDHR
Sbjct: 295 --------------------------DSRNKQI----GTGDRSEKIRTYNYPQNRVTDHR 324
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + + MSG ++ H +I +++H
Sbjct: 325 INLTLYELEQIMSGESLSH-IIEPLQEH 351
>gi|365171434|ref|ZP_09361195.1| peptide chain release factor 1 [Synergistes sp. 3_1_syn1]
gi|363617719|gb|EHL69094.1| peptide chain release factor 1 [Synergistes sp. 3_1_syn1]
Length = 357
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 116/209 (55%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ D++V + +DLK++T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPETEASGRIHTSTATVAVLPEAADVDVEIRSEDLKIDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+GI V Q++RSQIKNRA A+ L+ +Y+ + + Q + +R +
Sbjct: 244 RITHLPSGIVVTCQDERSQIKNRAKAMQFLRTKLYDAELQRQN----AEMAAERKGQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R++DHR
Sbjct: 298 -------------------------------------GTGDRAERIRTYNFPQNRLSDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + + + G L+ELIS + + D
Sbjct: 321 INLTLYKLDQILDGD--LYELISMLSEAD 347
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 35/185 (18%)
Query: 2 QRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
+RVP+ EK R VL PKDI D+K + +E + GAGG+ +
Sbjct: 87 ERVPELEKDIR---------VLLLPKDIN---DDKSVIIEIR--GGAGGEEAALF--SAN 130
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI---------QFEEQENRWVVRLVT 112
+ + T + + I + K +++ + +FE +R V+ V
Sbjct: 131 LFRMYTRFAERQRWKTEVISGSETGIGGFKEIVFRVDGTGAFSMLKFESGVHR--VQRVP 188
Query: 113 KRSARTIIHRTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDS 171
+ A IH + + + LP + V + +DLK++T R++GAGGQHVN TDS
Sbjct: 189 ETEASGRIHTSTATV-------AVLPEAADVDVEIRSEDLKIDTYRSSGAGGQHVNMTDS 241
Query: 172 ADRIT 176
A RIT
Sbjct: 242 AVRIT 246
>gi|315917590|ref|ZP_07913830.1| peptide chain release factor 1 [Fusobacterium gonidiaformans ATCC
25563]
gi|317059115|ref|ZP_07923600.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_5R]
gi|313684791|gb|EFS21626.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_5R]
gi|313691465|gb|EFS28300.1| peptide chain release factor 1 [Fusobacterium gonidiaformans ATCC
25563]
Length = 359
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 117/203 (57%), Gaps = 47/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE +GR+HTST +VAVLP+ +DI EVH+D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 184 VQRVPKTESAGRIHTSTATVAVLPEVEDITEVHIDPKDLKIDTYRSGGAGGQHVNMTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTG+ V+ Q++RSQ+KNR A+ L + E++ E+Q R+
Sbjct: 244 VRITHLPTGVIVQCQDERSQLKNREKAMKHLASKLLEMEVEKQ--------------RSE 289
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
I E+ L+V TG + + T + RITDH
Sbjct: 290 IEG-------------------------ERRLQV----GTGDRAEKIRTYNFPQGRITDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI+ TV+ + F+ G L E+I
Sbjct: 321 RIKLTVHQLEAFLDGD--LDEMI 341
>gi|297620931|ref|YP_003709068.1| Peptide chain release factor 1 [Waddlia chondrophila WSU 86-1044]
gi|297376232|gb|ADI38062.1| Peptide chain release factor 1 [Waddlia chondrophila WSU 86-1044]
gi|337293247|emb|CCB91238.1| peptide chain release factor 1 [Waddlia chondrophila 2032/99]
Length = 354
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 117/212 (55%), Gaps = 47/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP-KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS ++VAVL +P +D EV +DEKDL+V+T RA+GAGGQHVNTTDSA
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLLEPDEDSEVQIDEKDLRVDTYRASGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI E+RSQ KNR A+ LK I EI+ +++
Sbjct: 243 VRLTHIPTGIVAYCSEERSQHKNRDKAMRLLKAKIMEIEAQKK----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
EE+ + ++ +G + + T + +RITDH
Sbjct: 286 --------------------------FEERASERASQVGSGDRSERIRTYNFPQNRITDH 319
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
RI T YN+ + M G L E+++ I H YQ
Sbjct: 320 RINLTKYNLDKVMEGD--LEEIVNAIVAHFYQ 349
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 7 TEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHI- 65
T+K+G L ++ V P PKD K+ +E + TG G + VRM +
Sbjct: 85 TKKTGELQKKLETLIVPPDPKD------NKNTILELRAGTG-GDEAALFVGDCVRMYKMF 137
Query: 66 --PTGISVE----SQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
G E S D K AL+ Y +++E +R V+ V + +
Sbjct: 138 ADERGWKYEELASSPSDAGGFKEYMMALSGPNVYRY-LKYEGGTHR--VQRVPETETQGR 194
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H + + EP V ++EKDL+V+T RA+GAGGQHVNTTDSA R+T
Sbjct: 195 VHTSAITVAVLLEP-----DEDSEVQIDEKDLRVDTYRASGAGGQHVNTTDSAVRLT 246
>gi|404417808|ref|ZP_10999594.1| peptide chain release factor 1 [Staphylococcus arlettae CVD059]
gi|403489820|gb|EJY95379.1| peptide chain release factor 1 [Staphylococcus arlettae CVD059]
Length = 359
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 87/106 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +D+K++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDIKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG V SQ+++SQIKNR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGTVVTSQDEKSQIKNREKAMKVLKARVYDMKVQEEQAKY 288
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +D+K++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDIKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|262341278|ref|YP_003284133.1| peptide chain release factor 1 [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272615|gb|ACY40523.1| peptide chain release factor 1 [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 361
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTS ++VAVLPQ KDIEV+++ D+K ET R++GAGGQHVN T+SAV
Sbjct: 195 VQRIPKTESQGRVHTSAITVAVLPQVKDIEVNINLSDIKKETFRSSGAGGQHVNKTESAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+ I+VE QE+RSQ KN A+ L+ IY+ E+E R
Sbjct: 255 RLTHLPSKITVECQEERSQHKNFEKAINVLRSRIYQ---NEKEKR--------------- 296
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
L+E +K ++ +TG + T + R+TDHR
Sbjct: 297 -------------------------LKEISIKRKSLVSTGDRSVKIRTYNYPKSRVTDHR 331
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIR 205
I +++Y++A FM+G + E+I+ ++
Sbjct: 332 IHKSIYDLAGFMNGN--IQEMINFLK 355
>gi|344924573|ref|ZP_08778034.1| peptide chain release factor RF-1 [Candidatus Odyssella
thessalonicensis L13]
Length = 360
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 82/98 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +++++H+DEKDL+++ RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETEASGRIHTSAATVAVLPEAEEVDIHIDEKDLQIDVYRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+GI V Q++RSQ KNRA A+ L+ +YE +
Sbjct: 245 RITHIPSGIVVTQQDERSQHKNRAKAMKVLRARLYEAE 282
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++EKDL+++ RA+GAGGQHVNTTDSA RIT
Sbjct: 215 IHIDEKDLQIDVYRASGAGGQHVNTTDSAVRIT 247
>gi|296533064|ref|ZP_06895708.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957]
gi|296266608|gb|EFH12589.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957]
Length = 351
Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/98 (64%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLPQ +D++V ++E DL+++T RA+GAGGQHVN TDSAV
Sbjct: 178 VQRVPATETQGRIHTSTVTVAVLPQAEDVDVQINESDLRIDTYRASGAGGQHVNKTDSAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V QE+RSQ KNRA A+ L+ +YE Q
Sbjct: 238 RITHIPTGTVVAMQEERSQHKNRAKAMKVLRARLYEAQ 275
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++T RA+GAGGQHVN TDSA RIT
Sbjct: 208 VQINESDLRIDTYRASGAGGQHVNKTDSAVRIT 240
>gi|269792432|ref|YP_003317336.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100067|gb|ACZ19054.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 357
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE SGR+HTST +VAVLP+ +D++V + +DLK++T RA+GAGGQ+VN TDSAV
Sbjct: 184 VQRIPVTEASGRIHTSTATVAVLPEAEDVDVQIRPEDLKIDTYRASGAGGQYVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ+KNRA A+ L+ +Y+ + ++Q+ ++ +R +
Sbjct: 244 RITHIPTGLVVTCQDERSQLKNRAKAMQLLRARLYDQELQKQQ----AQMAAERKGQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNYPQNRLTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + + + G L+ELI +R D
Sbjct: 321 IGFTLYKLDQVLDGD--LYELIEALRVAD 347
>gi|221632126|ref|YP_002521347.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
gi|221155596|gb|ACM04723.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159]
Length = 363
Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ ++EVH+DE DL++E R++G GGQ VNTTDSAV
Sbjct: 189 VQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDDLRIEVFRSSGHGGQSVNTTDSAV 248
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ+KNR A+A L+ +YE+Q + E RT +
Sbjct: 249 RITHLPTGIVVSCQDERSQLKNRLKAMAVLRARLYELQRRKLEEE-----------RTGL 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R + TG + + T + DR+TDHR
Sbjct: 298 RRQQV--------------------------------GTGERAEKIRTYNFPQDRVTDHR 325
Query: 180 IQRTVYNVAEFMSG 193
++ TV N+ + G
Sbjct: 326 LKLTVNNLPAVLDG 339
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 34 DEKDLKVETKRATGAGGQHVNTTDSAVRMTHIP--TGISVESQEDRSQIKNRANALAKLK 91
DEKD+ VE + TG + D T G VE + + L K
Sbjct: 112 DEKDVIVEIRAGTGGEEAALFAADLFRMYTRYAERQGWKVEV------LSSSPTELGGFK 165
Query: 92 RLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA-VHLEEKD 150
+I+E++ + + + R R I + I LP + VH++E D
Sbjct: 166 EIIFEVRGKGAYSHFKHESGVHRVQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDD 225
Query: 151 LKVETKRATGAGGQHVNTTDSADRIT 176
L++E R++G GGQ VNTTDSA RIT
Sbjct: 226 LRIEVFRSSGHGGQSVNTTDSAVRIT 251
>gi|358466374|ref|ZP_09176204.1| hypothetical protein HMPREF9093_00674 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069124|gb|EHI79072.1| hypothetical protein HMPREF9093_00674 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 184
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 114/195 (58%), Gaps = 45/195 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +D+ EV +D K+LK++T R+ GAGGQHVN TDSA
Sbjct: 10 VQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKELKIDTYRSGGAGGQHVNMTDSA 69
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q +
Sbjct: 70 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRS--------------- 114
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
ES E+ L+V TG + + T + D RITDH
Sbjct: 115 --EVES----------------------ERRLQV----GTGDRAEKIRTYNFPDGRITDH 146
Query: 179 RIQRTVYNVAEFMSG 193
RI+ TV+ + F+ G
Sbjct: 147 RIKLTVHQLEAFLDG 161
>gi|340756651|ref|ZP_08693256.1| peptide chain release factor 1 [Fusobacterium varium ATCC 27725]
gi|251833914|gb|EES62477.1| peptide chain release factor 1 [Fusobacterium varium ATCC 27725]
Length = 358
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 118/203 (58%), Gaps = 47/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE +GR+HTST +VAVLP+ +D+ EV +D +DLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPRDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L ++E++ E+Q +
Sbjct: 243 VRITHLPTGIIVQCQDERSQLKNREKAMKHLASKLFEMECEKQRS--------------- 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+ ES E+ L+V TG + + T + RITDH
Sbjct: 288 --QVES----------------------ERRLQV----GTGDRSEKIRTYNFPQGRITDH 319
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI+ TVY + F+ G L E+I
Sbjct: 320 RIKFTVYQLEAFLDGD--LDEMI 340
>gi|260890431|ref|ZP_05901694.1| peptide chain release factor 1 [Leptotrichia hofstadii F0254]
gi|260860051|gb|EEX74551.1| peptide chain release factor 1 [Leptotrichia hofstadii F0254]
Length = 360
Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ D+ EV ++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPATESSGRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH+PTG+ V SQ+ RSQIKNR A+ L +YE+++E+Q
Sbjct: 243 VRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQ 285
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 214 VEINPSDLKIDTYRSSGAGGQHVNTTDSAVRIT 246
>gi|400153884|ref|NP_001257841.1| mitochondrial translational release factor 1 [Callithrix jacchus]
Length = 471
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 118/210 (56%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV +LPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 286 VQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKLDPKDLRIDTFRARGAGGQHVNTTD 345
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQI+N+ AL+ L+ +Y+ +++ K +
Sbjct: 346 SAVRLVHIPTGLVVECQQERSQIRNKEIALSVLRARLYQ------------QIIEKNKCQ 393
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
H T + L+V TGA + + T + + DR+T
Sbjct: 394 Q--HST-------------------------RKLQV----GTGAQSERIRTYNFTQDRVT 422
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 423 DHRIAYEVRDIKEFVCGGKALDQLIQRLLQ 452
>gi|425738331|ref|ZP_18856596.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
gi|425480004|gb|EKU47174.1| peptide chain release factor 1 [Staphylococcus massiliensis S46]
Length = 359
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 121/216 (56%), Gaps = 44/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+EV + +D+K++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTSTVAVLPEAEDVEVEIRNEDIKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG V SQ+++SQIKNR A+ LK +++++ +E+E ++ ++SA
Sbjct: 243 RITHLPTGTVVTSQDEKSQIKNREKAMNVLKARVHDMKVKEEEAKYASE---RKSAVGTG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 300 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+ + + M G L E+I + H+ ++ +L
Sbjct: 321 GLTIQKLDQIMEG--KLDEIIDALTMHEQTEKLKEL 354
>gi|257126615|ref|YP_003164729.1| peptide chain release factor 1 [Leptotrichia buccalis C-1013-b]
gi|257050554|gb|ACV39738.1| peptide chain release factor 1 [Leptotrichia buccalis C-1013-b]
Length = 360
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ D+ EV ++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPATESSGRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH+PTG+ V SQ+ RSQIKNR A+ L +YE+++E+Q
Sbjct: 243 VRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQ 285
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 214 VEINPSDLKIDTYRSSGAGGQHVNTTDSAVRIT 246
>gi|442743040|ref|YP_007374344.1| peptide chain release factor 1 [Candidatus Uzinura diaspidicola
str. ASNER]
gi|442739108|gb|AGC66804.1| peptide chain release factor 1 [Candidatus Uzinura diaspidicola
str. ASNER]
Length = 411
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 44/209 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTS V+V VLP+ DIEV+++ D+K ET R++GAGGQ+VN ++AV
Sbjct: 236 VQRVPKTESQGRIHTSAVTVVVLPEVDDIEVNINICDIKRETFRSSGAGGQNVNKVETAV 295
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ VE QE+RSQ KN+ AL L+ +Y+IQ ++ +L + S R
Sbjct: 296 RLTHLPTGVVVECQEERSQHKNKEKALHILRARLYKIQLDQ-------KLYDRSSER--- 345
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
TL S+ ++ +K+ T R+TDHRI
Sbjct: 346 --------------KTLVSTG------DRSVKIRTYNFPQG------------RVTDHRI 373
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDY 209
+++Y++ EFM+G + E+I +R D+
Sbjct: 374 NKSIYSLEEFMNG--RIQEMIDYLRMADF 400
>gi|313681233|ref|YP_004058971.1| peptide chain release factor 1 [Sulfuricurvum kujiense DSM 16994]
gi|313154093|gb|ADR32771.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfuricurvum
kujiense DSM 16994]
Length = 355
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 47/207 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+EV ++E DLK++ R++G+GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEVTINENDLKIDVMRSSGSGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V +Q+++SQ KN+ A+ LK IYE+Q EE + V+ +++R +
Sbjct: 241 RITHLPTGIVVTNQDEKSQHKNKDKAMKILKARIYEMQMEEAK----VKEMSERKEQV-- 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
TG + T + +RI+DHR
Sbjct: 295 -------------------------------------GTGDRSGRIRTYNYPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAM---LHELISD 203
I T+Y + E M GG M + LI+D
Sbjct: 318 INLTLYRLDEIMQGGLMDDIIEPLIAD 344
>gi|224477106|ref|YP_002634712.1| peptide chain release factor 1 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|254790897|sp|B9DMD1.1|RF1_STACT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|222421713|emb|CAL28527.1| peptide chain release factor 1 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 358
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+EV + + DLK+ET R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEVDIKDADLKIETYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTGI S E +SQI+NR AL LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGIIATSSE-KSQIQNREKALKVLKARVYDMKLQEEQEKY 287
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++ DLK+ET R++GAGGQHVNTTDSA RIT
Sbjct: 213 VDIKDADLKIETYRSSGAGGQHVNTTDSAVRIT 245
>gi|357419584|ref|YP_004932576.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
gi|355397050|gb|AER66479.1| peptide chain release factor 1 [Thermovirga lienii DSM 17291]
Length = 357
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 113/203 (55%), Gaps = 46/203 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ +D++V + E+DLK++T RA+GAGGQHVN TDSAV
Sbjct: 184 VQRVPVTESSGRIHTSTATVAVLPEAEDVDVEIREEDLKIDTYRASGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQIKNRA A+ L+ + + + ++Q L +R +
Sbjct: 244 RITHLPTGIVVTCQDERSQIKNRAKAMKLLRAKLLDNEIQKQ----TAELAAERKGQI-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNFPQNRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELIS 202
I T+Y + + + G L E+IS
Sbjct: 321 IGLTLYKLDQMLDGD--LDEMIS 341
>gi|91205113|ref|YP_537468.1| peptide chain release factor 1 [Rickettsia bellii RML369-C]
gi|119361596|sp|Q1RJT5.1|RF1_RICBR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91068657|gb|ABE04379.1| Peptide chain release factor RF-1 [Rickettsia bellii RML369-C]
Length = 357
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 81/96 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ L+EKDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE
Sbjct: 246 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE 281
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ LEEKDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 216 IKLEEKDLRIDTYRASGAGGQHVNTTDSAVRIT 248
>gi|157827554|ref|YP_001496618.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
gi|166223596|sp|A8GXI1.1|RF1_RICB8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157802858|gb|ABV79581.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389]
Length = 357
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 81/96 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ L+EKDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE
Sbjct: 246 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE 281
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ LEEKDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 216 IKLEEKDLRIDTYRASGAGGQHVNTTDSAVRIT 248
>gi|407770700|ref|ZP_11118067.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407286274|gb|EKF11763.1| peptide chain release factor RF-1 [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 360
Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 42/201 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+D KDL+++T R+ GAGGQHVNTTDSAV
Sbjct: 185 VQRVPVTEGGGRIHTSAATVAVLPEAEEVDIHIDPKDLRIDTYRSQGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ SQE +SQ KN+ A+ L +Y+ +E+E++ R ++S
Sbjct: 245 RITHIPTGVVAASQEAKSQHKNKEKAMKMLLSRLYD---QERESKDSARAADRKSQVGSG 301
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 302 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 322
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+Y + +F++GG + E+I
Sbjct: 323 NLTLYRLDDFITGGPSVDEMI 343
>gi|295111719|emb|CBL28469.1| bacterial peptide chain release factor 1 (bRF-1) [Synergistetes
bacterium SGP1]
Length = 357
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 83/102 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS+ +VAV+P+ +DIE+ + +DLKV+T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPVTEASGRIHTSSATVAVMPEVEDIEIEIRPEDLKVDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTGI Q++RSQIKNRA A+A LK +Y ++ E+Q
Sbjct: 244 RITHLPTGIVATCQDERSQIKNRARAMAYLKARLYALEQEKQ 285
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLKV+T R++GAGGQHVN TDSA RIT
Sbjct: 214 IEIRPEDLKVDTYRSSGAGGQHVNMTDSAVRIT 246
>gi|397904185|ref|ZP_10505106.1| Peptide chain release factor 1 [Caloramator australicus RC3]
gi|343178932|emb|CCC58005.1| Peptide chain release factor 1 [Caloramator australicus RC3]
Length = 356
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ D+EV ++ DL+++ R++G GGQHVNTTDSAV
Sbjct: 183 VQRVPVTEAGGRIHTSTATVAVLPEVDDVEVEINPNDLRIDVFRSSGHGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+++SQ+KNR A+ LK +YEI+ E+Q
Sbjct: 243 RITHIPTGIVVSCQDEKSQLKNREKAMKILKAKLYEIELEKQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
S I A R +++ TG + + T + R+TDHR
Sbjct: 285 ---RSQIAAER----------------------KSQVGTGDRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + F+ G
Sbjct: 320 IGLTIYQLESFLDG 333
>gi|383501663|ref|YP_005415022.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
gi|378932674|gb|AFC71179.1| peptide chain release factor 1 [Rickettsia australis str. Cutlack]
Length = 355
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 115/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ N+ R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRNKEQERADSRRGQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 NLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|225374519|ref|ZP_03751740.1| hypothetical protein ROSEINA2194_00134 [Roseburia inulinivorans DSM
16841]
gi|225213757|gb|EEG96111.1| hypothetical protein ROSEINA2194_00134 [Roseburia inulinivorans DSM
16841]
Length = 358
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 115/194 (59%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D++V +DEKD++++ RA+GAGGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDVQIDEKDIRIDVCRASGAGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQI+N+A A A L+ ++++ E+Q+
Sbjct: 243 RLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLFDL--EQQK----------------- 283
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E +L+ +++ TG + + T + R+TDHR
Sbjct: 284 -----------------------AHDAEAELR-KSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 INLTLYKLDKIMNG 333
>gi|373496654|ref|ZP_09587200.1| peptide chain release factor 1 [Fusobacterium sp. 12_1B]
gi|404368527|ref|ZP_10973877.1| peptide chain release factor 1 [Fusobacterium ulcerans ATCC 49185]
gi|313687822|gb|EFS24657.1| peptide chain release factor 1 [Fusobacterium ulcerans ATCC 49185]
gi|371965543|gb|EHO83043.1| peptide chain release factor 1 [Fusobacterium sp. 12_1B]
Length = 358
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 118/203 (58%), Gaps = 47/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE +GR+HTST +VAVLP+ +D+ EV +D +DLK++T R+ GAGGQHVN TDSA
Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPRDLKIDTYRSGGAGGQHVNMTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L ++E++ E+Q +
Sbjct: 243 VRITHLPTGIIVQCQDERSQLKNREKAMKHLASKLFEMECEKQRS--------------- 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
+ ES E+ L+V TG + + T + RITDH
Sbjct: 288 --QVES----------------------ERRLQV----GTGDRSEKIRTYNYPQGRITDH 319
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI+ TVY + ++ G L E+I
Sbjct: 320 RIKFTVYQLEAYLDGD--LDEMI 340
>gi|340754745|ref|ZP_08691481.1| peptide chain release factor 1 [Fusobacterium sp. D12]
gi|373111995|ref|ZP_09526230.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|419840525|ref|ZP_14363913.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421500023|ref|ZP_15947046.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313685754|gb|EFS22589.1| peptide chain release factor 1 [Fusobacterium sp. D12]
gi|371656563|gb|EHO21888.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|386907468|gb|EIJ72175.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402269124|gb|EJU18470.1| peptide chain release factor 1 [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 359
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 116/203 (57%), Gaps = 47/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE +GR+HTST +VAVLP+ +DI EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 184 VQRVPKTESAGRIHTSTATVAVLPEVEDITEVQIDPKDLKIDTYRSGGAGGQHVNMTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTG+ V+ Q++RSQ+KNR A+ L + E++ E+Q R+
Sbjct: 244 VRITHLPTGVIVQCQDERSQLKNREKAMKHLASKLLEMEIEKQ--------------RSE 289
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
I E+ L+V TG + + T + RITDH
Sbjct: 290 IEG-------------------------ERRLQV----GTGDRAEKIRTYNFPQGRITDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI+ TV+ + F+ G L E+I
Sbjct: 321 RIKLTVHQLEAFLDGD--LDEMI 341
>gi|291278533|ref|YP_003495368.1| peptide chain release factor RF-1 [Deferribacter desulfuricans
SSM1]
gi|290753235|dbj|BAI79612.1| peptide chain release factor RF-1 [Deferribacter desulfuricans
SSM1]
Length = 355
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS +VAVLP+ D+EV +D DL+++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRIPVTESGGRIHTSACTVAVLPEADDVEVEIDPSDLRIDVFRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQIKN+ A+ LK I E++ I
Sbjct: 242 RITHIPTGIVVSCQDERSQIKNKEKAMKLLKAKILEME---------------------I 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ + I + R+ L+V +G + + T + +R+TDHR
Sbjct: 281 RKQQEAIASNRK------------------LQV----GSGDRSERIRTYNFPQNRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+YN+ + M G L E+I + +D
Sbjct: 319 INLTLYNLDQVMEG--ELDEIIDALIAYD 345
>gi|157825817|ref|YP_001493537.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
gi|166223595|sp|A8GNQ4.1|RF1_RICAH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157799775|gb|ABV75029.1| peptide chain release factor 1 [Rickettsia akari str. Hartford]
Length = 355
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 43/208 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ N+ R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRNKEQERADSRRGQIGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHD 208
T+Y + E + G L E I + D
Sbjct: 321 NLTLYKIDEVVKNG-QLDEFIEALIAED 347
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|355754658|gb|EHH58559.1| Peptide chain release factor 1, mitochondrial [Macaca fascicularis]
Length = 445
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ E+ + +RSAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDK-------CQQRSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|326386588|ref|ZP_08208210.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208903|gb|EGD59698.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM
19370]
Length = 356
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +D+KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPDEVDVSIDDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI V Q++RSQ KN+A A+ L+ +Y+++ E+ +
Sbjct: 242 RITHLPTGIVVTQQDERSQHKNKAKAMQVLRTRLYDLRREQAQG 285
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++KDLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 212 VSIDDKDLKIDIYRASGAGGQHVNTTDSAVRIT 244
>gi|146332693|gb|ABQ22852.1| mitochondrial peptide chain release factor 1 precursor-like protein
[Callithrix jacchus]
Length = 192
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 47/221 (21%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV +LPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 7 VQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKLDPKDLRIDTFRARGAGGQHVNTTD 66
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQI+N+ AL+ L+ +Y+ E+ + +
Sbjct: 67 SAVRLVHIPTGLVVECQQERSQIRNKEIALSVLRARLYQQIIEKNKCQQ----------- 115
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
H T + L+V TGA + + T + + DR+T
Sbjct: 116 ---HST-------------------------RKLQV----GTGAQSERILTYNFTQDRVT 143
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
DHRI V ++ EF+ GG L +LI + Q + I +LL
Sbjct: 144 DHRIAYEVRDIKEFVCGGKALDQLIQRLLQSADEEAIVELL 184
>gi|239787352|emb|CAX83829.1| Peptide chain release factor RF-1 [uncultured bacterium]
Length = 354
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 43/208 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +D+++ + ++DL+++ RA+GAGGQHVNTTDSAV
Sbjct: 180 VQRVPETESSGRVHTSAATVAVLPEVEDVDIEIKDEDLRIDICRASGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q++RSQ KN+A A+ ++ +Y+++ EQ+ VR ++S
Sbjct: 240 RLTHLPTGLVVAQQDERSQHKNKAKAMKIMRARLYDLRKREQDE---VRAADRKSQVGSG 296
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 297 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 317
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHD 208
T+Y + + M G A L ELI ++ D
Sbjct: 318 NLTLYKLDQVMQGEA-LDELIDNLIADD 344
>gi|388454334|ref|NP_001253609.1| peptide chain release factor 1, mitochondrial [Macaca mulatta]
gi|355700956|gb|EHH28977.1| Peptide chain release factor 1, mitochondrial [Macaca mulatta]
gi|380818238|gb|AFE80993.1| peptide chain release factor 1, mitochondrial precursor [Macaca
mulatta]
gi|383423085|gb|AFH34756.1| peptide chain release factor 1, mitochondrial precursor [Macaca
mulatta]
gi|384939448|gb|AFI33329.1| peptide chain release factor 1, mitochondrial precursor [Macaca
mulatta]
Length = 445
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ E+ + +RSAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDK-------CQQRSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|39998194|ref|NP_954145.1| peptide chain release factor 1 [Geobacter sulfurreducens PCA]
gi|409913549|ref|YP_006892014.1| peptide chain release factor 1 [Geobacter sulfurreducens KN400]
gi|61214645|sp|Q748B1.1|RF1_GEOSL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|39985140|gb|AAR36495.1| peptide chain release factor 1 [Geobacter sulfurreducens PCA]
gi|298507132|gb|ADI85855.1| peptide chain release factor 1 [Geobacter sulfurreducens KN400]
Length = 355
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 114/214 (53%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DIEV ++ DLK++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAVLPEAEDIEVDINPADLKIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI VE Q++RSQIKNRA A+ LK I + +EQ R
Sbjct: 240 RITHIPTGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNAR--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------IAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M G + E++ +R H YQ
Sbjct: 315 HRIGLTLYRLDSLMEGD--IAEVVDALRTH-YQM 345
>gi|85375680|ref|YP_459742.1| peptide chain release factor 1 [Erythrobacter litoralis HTCC2594]
gi|122543160|sp|Q2N5U6.1|RF1_ERYLH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|84788763|gb|ABC64945.1| protein chain release factor A [Erythrobacter litoralis HTCC2594]
Length = 355
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 80/96 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P +++V +D+KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 181 VQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDDKDLKIDIYRASGAGGQHVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V+ Q++RSQ KN+A A+ L+ +Y+
Sbjct: 241 RITHLPTGIVVQQQDERSQHKNKAKAMQVLRTRLYD 276
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++KDLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 211 VQIDDKDLKIDIYRASGAGGQHVNTTDSAVRIT 243
>gi|227499754|ref|ZP_03929854.1| peptide chain release factor RF1 [Anaerococcus tetradius ATCC
35098]
gi|227218140|gb|EEI83406.1| peptide chain release factor RF1 [Anaerococcus tetradius ATCC
35098]
Length = 358
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +++VH+D D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVDELDVHVDPNDIRTDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+++SQIKN+ A+ L IYE++ EE+ N+ + ++S
Sbjct: 243 RLTHIPTGIVVSMQDEKSQIKNKEKAMKILLARIYELE-EEKRNKEIAD--NRKSQVGTG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P RITDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RITDHRI 320
Query: 181 QRTVYNVAEFMSG--GAMLHELISD 203
+T+Y + +F++G G M+ LI++
Sbjct: 321 NKTIYQLDDFLNGGIGEMIDSLIAE 345
>gi|118588514|ref|ZP_01545923.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
gi|118439220|gb|EAV45852.1| peptide chain release factor 1 [Stappia aggregata IAM 12614]
Length = 357
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 117/207 (56%), Gaps = 47/207 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLPQ +D+++ + E DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPATESGGRIHTSAATVAVLPQAEDVDIDVQESDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ IY+ EE+E R
Sbjct: 243 RITHLPTGIVVAVQDERSQHKNKARAMQLLRARIYD---EERE-------------RAAS 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RTE+ + L+V +G + + T + R+TDHR
Sbjct: 287 ERTEA-----------------------RRLQV----GSGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG---GAMLHELISD 203
I T+Y + + +SG G ++ LI D
Sbjct: 320 IGLTLYKLEQILSGEALGEVIEPLILD 346
>gi|322379189|ref|ZP_08053581.1| peptide chain release factor 1 [Helicobacter suis HS1]
gi|322379995|ref|ZP_08054263.1| peptide chain release factor 1 [Helicobacter suis HS5]
gi|321147584|gb|EFX42216.1| peptide chain release factor 1 [Helicobacter suis HS5]
gi|321148391|gb|EFX42899.1| peptide chain release factor 1 [Helicobacter suis HS1]
Length = 352
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E++++ DL++E RA G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEADDVEININPSDLRIEVFRAGGHGGQCVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KNR AL LK +YE Q EEQ+
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNRDKALKILKARLYEKQIEEQQQ---------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E+ ++V +G + + T + +R++DHR
Sbjct: 285 -----------------------AHSAERKMQV----GSGDRSERIRTYNYPQNRLSDHR 317
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y++ E M G +
Sbjct: 318 INLTLYSLEELMLSGNL 334
>gi|319790214|ref|YP_004151847.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
gi|317114716|gb|ADU97206.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1]
Length = 365
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 121/218 (55%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VA+LP+ +++E+ + E DLK++T R++GAGGQHVNTTDSAV
Sbjct: 187 VQRIPVTESGGRIHTSTATVAILPEAEEVEIEIKESDLKIDTYRSSGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V +RSQI+NR A+ L+ + E+ +E Q+ ++ + R A+
Sbjct: 247 RITHLPTGIVVTCSNERSQIQNRIKAMKILRARLKEL-YERQQKE---KMDSARKAQV-- 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+G + + T + + R+TDHR
Sbjct: 301 -------------------------------------GSGDRSEKIRTYNFPEGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I+ T+YN+ EF+ G L E+I + + +I+ L+
Sbjct: 324 IKLTLYNLQEFLDGD--LDEMIDALAAAEQAKKIEALM 359
>gi|427432053|ref|ZP_18921050.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
gi|425877425|gb|EKV26169.1| Peptide chain release factor 1 [Caenispirillum salinarum AK4]
Length = 352
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/216 (37%), Positives = 115/216 (53%), Gaps = 43/216 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D++VH+++KDL+++T R+ GAGGQHVNTT+SAV
Sbjct: 179 VQRVPETEGGGRIHTSAATVAVLPEAQDVDVHIEDKDLRIDTYRSQGAGGQHVNTTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ QE++SQ KN+A AL L +YE Q E+ N R +RS
Sbjct: 239 RITHVPTGVVAACQEEKSQHKNKAKALKMLMAKLYEHQREQAVNE---RAEARRSQVGSG 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 296 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 316
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+Y + + M G L +L+ + D ++ +L
Sbjct: 317 NLTLYAIDKIMQGEG-LDDLVDALTTEDNAAKLAEL 351
>gi|47218558|emb|CAG10257.1| unnamed protein product [Tetraodon nigroviridis]
Length = 438
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 47/211 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T++V +LPQP ++++H+D KDL+++T R+ GAGGQ VNTTD
Sbjct: 262 VQRIPEVGLSSRMQRIHTGTMTVIILPQPAELDLHVDPKDLRIDTFRSRGAGGQSVNTTD 321
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTGI+VE Q+ RSQ++NR A+ L+ +Y+ + ++ R RL +R +
Sbjct: 322 SAVRVVHLPTGIAVECQQSRSQLQNRDTAMRALRARLYQARLGKESQR---RLSARR--Q 376
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ R++S + + T + S DR+T
Sbjct: 377 QVGTRSQS--------------------------------------ERIRTYNFSQDRVT 398
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
DHR T ++ EFM GG L +LI D+ +H
Sbjct: 399 DHRTGYTARDIKEFMRGGQALQDLIGDVLEH 429
>gi|163815255|ref|ZP_02206632.1| hypothetical protein COPEUT_01415 [Coprococcus eutactus ATCC 27759]
gi|158449450|gb|EDP26445.1| peptide chain release factor 1 [Coprococcus eutactus ATCC 27759]
Length = 358
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 125/217 (57%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTSTV+VAV+P+ ++++V +++ D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPKTESGGRIHTSTVTVAVMPEAEEVDVEINDNDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQ++N+A A A L+ +Y+++ ++Q
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
H E+ D K ++ TG + + T + + R+TDHR
Sbjct: 285 HDAEAA-----------------------DRK--SQIGTGDRSEKIRTYNFPEGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I+ T+Y + + M+G L+ELI + D ++ Q+
Sbjct: 320 IKLTLYKLDQIMNGD--LNELIDSLIAADQTAKLAQV 354
>gi|160893851|ref|ZP_02074634.1| hypothetical protein CLOL250_01405 [Clostridium sp. L2-50]
gi|156864503|gb|EDO57934.1| peptide chain release factor 1 [Clostridium sp. L2-50]
Length = 358
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 125/217 (57%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTSTV+VAV+P+ ++++V ++E D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPKTESGGRIHTSTVTVAVMPEAEEVDVEINENDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQ++N+A A A L+ +Y+++ ++Q
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
H E+ D K ++ TG + + T + + R+TDHR
Sbjct: 285 HDAEAA-----------------------DRK--SQIGTGDRSEKIRTYNFPEGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I+ T+Y + + ++G L+E+I + D ++ Q+
Sbjct: 320 IKLTLYKLEQILNGD--LNEIIDSLIAADQAAKLSQV 354
>gi|295094043|emb|CBK83134.1| bacterial peptide chain release factor 1 (bRF-1) [Coprococcus sp.
ART55/1]
Length = 358
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 125/217 (57%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTST++VAV+P+ ++++V ++E D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPKTESGGRIHTSTITVAVMPEAEEVDVEINENDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQ++N+A A A L+ +Y+++ ++Q
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
H E+ A R ++ TG + + T + + R+TDHR
Sbjct: 285 HDAEA---ADR----------------------RSQIGTGDRSEKIRTYNFPEGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I+ T+Y + + M+G L+ELI + D ++ Q+
Sbjct: 320 IKLTLYKLDQIMNGD--LNELIDSLIAADQTAKLAQV 354
>gi|289523200|ref|ZP_06440054.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503743|gb|EFD24907.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 358
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+P +++V + +DLK++T RA+GAGGQ+VN TDSAV
Sbjct: 185 VQRVPVTEASGRIHTSTATVAVLPEPDEVDVEIRPEDLKIDTFRASGAGGQYVNMTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI V Q++RSQ+KNRA A+ L+ +Y+++ Q+
Sbjct: 245 RITHIPTGIVVTCQDERSQLKNRAKAMQLLRAKLYDMEIRRQQ 287
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 111 VTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD 170
VT+ S R IH + + + EP V + +DLK++T RA+GAGGQ+VN TD
Sbjct: 190 VTEASGR--IHTSTATVAVLPEPDEV------DVEIRPEDLKIDTFRASGAGGQYVNMTD 241
Query: 171 SADRIT 176
SA RIT
Sbjct: 242 SAVRIT 247
>gi|392407018|ref|YP_006443626.1| peptide chain release factor 1 [Anaerobaculum mobile DSM 13181]
gi|390620154|gb|AFM21301.1| peptide chain release factor 1 [Anaerobaculum mobile DSM 13181]
Length = 358
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 116/204 (56%), Gaps = 50/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+P +++V + +DL+++T RA+GAGGQ+VN TDSAV
Sbjct: 185 VQRVPVTEASGRIHTSTATVAVLPEPDEVDVEIRPEDLRIDTFRASGAGGQYVNMTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQ+KNR A+ L+ +Y+++ ++Q
Sbjct: 245 RITHIPTGIVVSCQDERSQLKNRVKAMQLLRAKLYDLKLQQQ------------------ 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
++++ E + G+G + + T + +R+TD
Sbjct: 287 ---------------------------QEEMASERRGQIGSGDRSERIRTYNFPQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T++N+ E + G L EL+
Sbjct: 320 HRIGLTLHNLEEILDGD--LDELV 341
>gi|383786439|ref|YP_005471008.1| peptide chain release factor 1 (bRF-1) [Fervidobacterium
pennivorans DSM 9078]
gi|383109286|gb|AFG34889.1| bacterial peptide chain release factor 1 (bRF-1) [Fervidobacterium
pennivorans DSM 9078]
Length = 349
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 120/217 (55%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ KD+++++D KD++++T RA+GAGGQ+VN T+SAV
Sbjct: 170 VQRVPVTESGGRIHTSTATVAVLPEIKDVDIYIDPKDIRIDTYRASGAGGQYVNKTESAV 229
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ A+ L+ +YE+ EQE +
Sbjct: 230 RITHLPTGIVVTCQSERSQHQNKEKAMMVLRSKLYELARREQEEK--------------- 274
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ E K+ + TG + + T + +R+TDHR
Sbjct: 275 -----------------------ISSERKN-----QIGTGERSEKIRTYNFPQNRVTDHR 306
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+ + G L +I + Q+D + ++ +L
Sbjct: 307 INLTIYNLQAVLDGN--LDLIIPKLMQYDIEQQLKEL 341
>gi|392378185|ref|YP_004985344.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
gi|356879666|emb|CCD00592.1| peptide chain release factor 1 [Azospirillum brasilense Sp245]
Length = 357
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 43/216 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPATETQGRIHTSAATVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +YE + E++ R ++S
Sbjct: 244 RITHLPTGLVVSQQDEKSQHKNKAKALKVLRARLYERERAEKDK---ARAADRKSQVGSG 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 301 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 321
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+Y + + M+G A L ELI + D R+ +L
Sbjct: 322 NLTLYKIEKVMAGEA-LDELIDALTAEDEAARLSEL 356
>gi|383786399|ref|YP_005470968.1| peptide chain release factor 1 [Fervidobacterium pennivorans DSM
9078]
gi|383109246|gb|AFG34849.1| peptide chain release factor 1 [Fervidobacterium pennivorans DSM
9078]
Length = 349
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ KD++V +D KD++++T RA+GAGGQ+VN T+SA+
Sbjct: 170 VQRIPVTESGGRIHTSTATVAVLPETKDVDVFIDPKDIRIDTYRASGAGGQYVNKTESAI 229
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ +N+ AL L+ +YE+ EQ+ +L ++R
Sbjct: 230 RITHIPTGIVVTCQSERSQHQNKEKALMVLRSKLYELARREQDE----KLSSQR------ 279
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+T+ +G + + T + +R+TDHR
Sbjct: 280 ---------------------------------KTQIGSGERSEKIRTYNFPQNRVTDHR 306
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+ + G L +I + Q+D + ++ +L
Sbjct: 307 INLTIYNLQAVLDGD--LDLIIPKLMQYDIEEQLKEL 341
>gi|157828568|ref|YP_001494810.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933282|ref|YP_001650071.1| peptide chain release factor 1 [Rickettsia rickettsii str. Iowa]
gi|378721380|ref|YP_005286267.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|378722726|ref|YP_005287612.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|378724083|ref|YP_005288967.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
gi|379016361|ref|YP_005292596.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|379017869|ref|YP_005294104.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|379018974|ref|YP_005295208.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|379712443|ref|YP_005300782.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|166223598|sp|A8GSC7.1|RF1_RICRS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039987|sp|B0BXT9.1|RF1_RICRO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157801049|gb|ABV76302.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908369|gb|ABY72665.1| bacterial peptide chain release factor 1 (RF-1) [Rickettsia
rickettsii str. Iowa]
gi|376324885|gb|AFB22125.1| peptide chain release factor 1 [Rickettsia rickettsii str. Brazil]
gi|376326404|gb|AFB23643.1| peptide chain release factor 1 [Rickettsia rickettsii str.
Colombia]
gi|376327750|gb|AFB24988.1| peptide chain release factor 1 [Rickettsia rickettsii str. Arizona]
gi|376329088|gb|AFB26325.1| peptide chain release factor 1 [Rickettsia philipii str. 364D]
gi|376330435|gb|AFB27671.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hino]
gi|376331554|gb|AFB28788.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hlp#2]
gi|376333098|gb|AFB30331.1| peptide chain release factor 1 [Rickettsia rickettsii str. Hauke]
Length = 355
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ + R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRKKEQARADSRRGQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 HLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|261749210|ref|YP_003256895.1| peptide chain release factor 1 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497302|gb|ACX83752.1| peptide chain release factor 1 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 364
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTS ++VAVLP+ KDIE+ + D+K +T R++G+GGQHVN T+SAV
Sbjct: 198 VQRIPKTESQGRVHTSAITVAVLPEIKDIEMKIHLSDIKKDTFRSSGSGGQHVNKTESAV 257
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPT I+VE QE+RSQ KN A+ L+ IY+ E+E R+ R + ++S
Sbjct: 258 RLTHIPTKITVECQEERSQHKNFEKAMNVLRSRIYQ---NEKEKRFKERSIKRKS----- 309
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
V ++ +K+ T R+TDHRI
Sbjct: 310 ----------------------LVSTGDRSVKIRTYNYPKG------------RVTDHRI 335
Query: 181 QRTVYNVAEFMSGGAMLHELISDIR 205
+++YN+ FM+G + E+I+ ++
Sbjct: 336 HKSIYNLVGFMNGN--IQEMINFLK 358
>gi|148284270|ref|YP_001248360.1| peptide chain release factor 1 [Orientia tsutsugamushi str.
Boryong]
gi|166223581|sp|A5CCS8.1|RF1_ORITB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146739709|emb|CAM79522.1| peptide chain release factor [Orientia tsutsugamushi str. Boryong]
Length = 359
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 118/205 (57%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE +GR+HTS +V VLP+ ++++V +D KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A A+ L +Y++ E+Q+++
Sbjct: 243 RITHIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDL--EKQKSK--------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+E+ + + + TG + + T + R+TDHR
Sbjct: 286 --------------------------QEQAISRKVQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T+Y + E + G L E+I+++
Sbjct: 320 INLTLYKIEEIIQEGK-LDEIINNL 343
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL + ++FE +R V+ + K + IH + + ++ LP +
Sbjct: 161 ASALISGNGVFANLKFESGVHR--VQRIPKTESNGRIHTSAATVV-------VLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|444335778|ref|YP_007392147.1| peptide chain release factor 1 [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444300157|gb|AGD98394.1| peptide chain release factor 1 [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 362
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 116/205 (56%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTS ++VAVLP+ KDIE+ + D+K +T R++G+GGQHVN T+SAV
Sbjct: 196 VQRIPKTESQGRVHTSAITVAVLPEIKDIEMKIHLSDIKKDTFRSSGSGGQHVNKTESAV 255
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPT I+VE QE+RSQ KN A+ L+ IY+ E+E R+ R + ++S
Sbjct: 256 RLTHIPTKITVECQEERSQHKNFEKAMNVLRSRIYQ---NEKEKRFKERSIKRKS----- 307
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
V ++ +K+ T R+TDHRI
Sbjct: 308 ----------------------LVSTGDRSVKIRTYNYPKG------------RVTDHRI 333
Query: 181 QRTVYNVAEFMSGGAMLHELISDIR 205
+++YN+ FM+G + E+I+ ++
Sbjct: 334 HKSIYNLVGFMNGN--IQEMINLLK 356
>gi|291538249|emb|CBL11360.1| bacterial peptide chain release factor 1 (bRF-1) [Roseburia
intestinalis XB6B4]
Length = 358
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 115/194 (59%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +D+KD++++ RA+GAGGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVQIDDKDIRIDVCRASGAGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQI+N+A A A L+ +Y++ E+Q+
Sbjct: 243 RLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLYDL--EQQK----------------- 283
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E +L+ +++ TG + + T + R+TDHR
Sbjct: 284 -----------------------AHDAEAELR-KSQVGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 INLTLYKLDKIMNG 333
>gi|419760651|ref|ZP_14286920.1| peptide chain release factor 1 [Thermosipho africanus H17ap60334]
gi|407514157|gb|EKF49002.1| peptide chain release factor 1 [Thermosipho africanus H17ap60334]
Length = 354
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 121/217 (55%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ KD++V +D KD++++T RA+GAGGQ+VN T+SA+
Sbjct: 175 VQRIPVTESGGRIHTSTATVAVLPEIKDVDVFIDPKDIRIDTYRASGAGGQYVNKTESAI 234
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ +N+ AL L+ +YE+ EQ+ +L ++R
Sbjct: 235 RITHIPTGIVVTCQSERSQHQNKEKALMVLRSKLYELARREQDE----KLSSQR------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+T+ +G + + T + +R+TDHR
Sbjct: 285 ---------------------------------KTQIGSGERSEKIRTYNFPQNRVTDHR 311
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+ + G L +I + Q+D + ++ +L
Sbjct: 312 INLTIYNLQAVLDGD--LDLIIPKLMQYDIEEQLKEL 346
>gi|240147055|ref|ZP_04745656.1| peptide chain release factor 1 [Roseburia intestinalis L1-82]
gi|257200778|gb|EEU99062.1| peptide chain release factor 1 [Roseburia intestinalis L1-82]
gi|291535754|emb|CBL08866.1| bacterial peptide chain release factor 1 (bRF-1) [Roseburia
intestinalis M50/1]
Length = 357
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 115/194 (59%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +D+KD++++ RA+GAGGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVQIDDKDIRIDVCRASGAGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQI+N+A A A L+ +Y++ E+Q+
Sbjct: 243 RLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLYDL--EQQK----------------- 283
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E +L+ +++ TG + + T + R+TDHR
Sbjct: 284 -----------------------AHDAEAELR-KSQVGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 INLTLYKLDKIMNG 333
>gi|189182919|ref|YP_001936704.1| peptide chain release factor 1 [Orientia tsutsugamushi str. Ikeda]
gi|238692229|sp|B3CQD1.1|RF1_ORITI RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189179690|dbj|BAG39470.1| peptide chain release factor RF-1 [Orientia tsutsugamushi str.
Ikeda]
Length = 359
Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 118/205 (57%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE +GR+HTS +V VLP+ ++++V +D KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A A+ L +Y++ E+Q+++
Sbjct: 243 RITHIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDL--EKQKSQ--------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+E+ + + + TG + + T + R+TDHR
Sbjct: 286 --------------------------QEQAMSRKVQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T+Y + E + G L E+I+++
Sbjct: 320 INLTLYKIEEIIQEGK-LDEIINNL 343
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL + ++FE +R V+ + K + IH + + ++ LP +
Sbjct: 161 ASALISGNGVFANLKFESGVHR--VQRIPKTESNGRIHTSAATVV-------VLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|257066246|ref|YP_003152502.1| peptide chain release factor 1 [Anaerococcus prevotii DSM 20548]
gi|256798126|gb|ACV28781.1| peptide chain release factor 1 [Anaerococcus prevotii DSM 20548]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +++V LD D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVDEVDVELDPNDIRTDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+++SQIKN+ A+ L IYE++ EE+ N+ + ++S
Sbjct: 243 RLTHIPTGIVVSMQDEKSQIKNKEKAMKILLARIYELE-EEKRNKEIAD--NRKSQVGTG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P RITDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RITDHRI 320
Query: 181 QRTVYNVAEFMSG--GAMLHELISD 203
+T+Y + +F++G G M+ LI++
Sbjct: 321 NKTIYQLDDFLNGNIGEMIDSLIAE 345
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 66/162 (40%), Gaps = 16/162 (9%)
Query: 20 VAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PTGISVESQE 75
+ +L PKD D +D+ VE + GAGG RM H+ G E E
Sbjct: 95 MKILLIPKDPN---DSRDVIVEIR--PGAGGDEAGLFAGDLYRMYHMYADKEGYKTEDVE 149
Query: 76 DRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
SQ + +K + I+ E +R+ R R + I
Sbjct: 150 VSSQ------GVGGIKEATFMIRGEGAYSRFKYESGVHRVQRVPETESGGRIHTSTATVA 203
Query: 136 TLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP V L+ D++ + R++G GGQ VNTTDSA R+T
Sbjct: 204 VLPEVDEVDVELDPNDIRTDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|374702493|ref|ZP_09709363.1| peptide chain release factor 1 [Pseudomonas sp. S9]
Length = 360
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + E++++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAEININPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A L + ++Q++
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRAKAMAWLG-----AKLKDQQD--------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
A H E D + K G+G + + T + R+T
Sbjct: 286 ----------------------AAAHKEISDTR---KLLVGSGDRSERIRTYNFPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++AE MSGG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLAEVMSGGVDAVIEPLLA-------EYQADQL 355
>gi|414161681|ref|ZP_11417935.1| peptide chain release factor 1 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410875393|gb|EKS23313.1| peptide chain release factor 1 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK+ET R++G+GGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIETYRSSGSGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTGI S E +SQI+NR AL LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGIIATSSE-KSQIQNREKALKVLKARVYDMKLQEEQAKY 287
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK+ET R++G+GGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIETYRSSGSGGQHVNTTDSAVRIT 245
>gi|319893069|ref|YP_004149944.1| peptide chain release factor 1 [Staphylococcus pseudintermedius
HKU10-03]
gi|317162765|gb|ADV06308.1| Peptide chain release factor 1 [Staphylococcus pseudintermedius
HKU10-03]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 45/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHIPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYAAQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+ + + M G L E++ + H+ ++ +L
Sbjct: 320 GLTLQKLDQIMEG--KLDEIVDALTMHEQTEKLKEL 353
>gi|314935933|ref|ZP_07843283.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
gi|313655939|gb|EFS19681.1| peptide chain release factor 1 [Staphylococcus hominis subsp.
hominis C80]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTGI S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHIPTGIIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|417002373|ref|ZP_11941762.1| peptide chain release factor 1 [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479514|gb|EGC82610.1| peptide chain release factor 1 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 113/205 (55%), Gaps = 44/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +++VH+D D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVDELDVHVDPNDIRTDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+++SQIKN+ A+ L IYE++ EE+ N+ + ++S
Sbjct: 243 RLTHIPTGIVVSMQDEKSQIKNKEKAMRILLARIYELE-EEKRNKEIAD--NRKSQVGTG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P RITDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RITDHRI 320
Query: 181 QRTVYNVAEFMSG--GAMLHELISD 203
+T+Y + +F++G G M+ LI +
Sbjct: 321 NKTIYQLDDFLNGNIGEMIDSLIEE 345
>gi|228474912|ref|ZP_04059641.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
gi|228271144|gb|EEK12524.1| peptide chain release factor 1 [Staphylococcus hominis SK119]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTGI S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHIPTGIIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|418618975|ref|ZP_13181818.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
gi|374825836|gb|EHR89755.1| peptide chain release factor 1 [Staphylococcus hominis VCU122]
Length = 358
Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/109 (55%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTGI S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHIPTGIIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|337287822|ref|YP_004627294.1| Peptide chain release factor 1 [Thermodesulfobacterium sp. OPB45]
gi|334901560|gb|AEH22366.1| Peptide chain release factor 1 [Thermodesulfobacterium geofontis
OPF15]
Length = 368
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 116/217 (53%), Gaps = 49/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ ++ V + +DLK+ET RA+G GGQHVN T+SAV
Sbjct: 189 VQRVPITESSGRIHTSTATVAVLPEVDEVTVEIRPEDLKIETMRASGHGGQHVNKTESAV 248
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q +RSQ +N+A AL L+ +YE+ EQ ++ T+R ++
Sbjct: 249 RITHIPTGITVTCQNERSQHQNKATALKILRAKLYELALREQNE----KIQTERKSQV-- 302
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 303 -------------------------------------GTGERCEKIRTYNFPQNRVTDHR 325
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVYN+ E + G L E I + H +R+ L
Sbjct: 326 IGLTVYNLPEVLDG--ELDEFIDALIAH---YRVKAL 357
>gi|224373415|ref|YP_002607787.1| peptide chain release factor 1 [Nautilia profundicola AmH]
gi|254790893|sp|B9L5Z9.1|RF1_NAUPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|223590043|gb|ACM93779.1| peptide chain release factor 1 [Nautilia profundicola AmH]
Length = 355
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 115/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VA++P+ D+++ LD KD+K+E RA GAGGQHVN T+SAV
Sbjct: 181 VQRIPATESQGRIHTSAVTVAIMPEVDDVDIELDPKDIKIEVMRAGGAGGQHVNKTESAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTHIPTGI+V Q++RSQ +N+ A+ LK + FE+ EN RL AR
Sbjct: 241 RMTHIPTGITVSMQDERSQQRNKEKAMQILKARV----FEKLENE---RLAAIGEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+++ +G + + T + +RITDHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNYPQNRITDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + + MS G + E+I + H YQ
Sbjct: 318 IGLTLYRLEQIMSEG-LFDEIIDPLIAH-YQ 346
>gi|339319955|ref|YP_004679650.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
gi|338226080|gb|AEI88964.1| protein chain release factor A [Candidatus Midichloria mitochondrii
IricVA]
Length = 359
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +++++ ++EKDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETETSGRVHTSAATVAVLPEAEEVDITIEEKDLKIDVYRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+++SQ KN+A AL L+ +Y+ + ++E R +++S
Sbjct: 245 RITHIPTGIVVCQQDEKSQHKNKARALKILRARLYDAERSKKEAE---RAASRKSQVGTG 301
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 302 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 322
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
TVY + E ++ G + + LI+D
Sbjct: 323 NLTVYTLDEIVNEGTLDQFIDALIAD 348
>gi|289550267|ref|YP_003471171.1| peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315660273|ref|ZP_07913128.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|385783895|ref|YP_005760068.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|418415218|ref|ZP_12988424.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|418636147|ref|ZP_13198499.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|289179799|gb|ADC87044.1| Peptide chain release factor 1 [Staphylococcus lugdunensis
HKU09-01]
gi|315494700|gb|EFU83040.1| peptide chain release factor RF1 [Staphylococcus lugdunensis
M23590]
gi|339894151|emb|CCB53415.1| peptide chain release factor 1 [Staphylococcus lugdunensis N920143]
gi|374841146|gb|EHS04625.1| peptide chain release factor 1 [Staphylococcus lugdunensis VCU139]
gi|410875225|gb|EKS23150.1| peptide chain release factor 1 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 358
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTG+ S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHIPTGVIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|341583910|ref|YP_004764401.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
gi|340808136|gb|AEK74724.1| peptide chain release factor 1 [Rickettsia heilongjiangensis 054]
Length = 355
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ + R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRKKGQERADSRRGQIGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 NLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|154248977|ref|YP_001409802.1| peptide chain release factor 1 [Fervidobacterium nodosum Rt17-B1]
gi|154152913|gb|ABS60145.1| peptide chain release factor 1 [Fervidobacterium nodosum Rt17-B1]
Length = 347
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 50/219 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ KD++V++D KD++++T RA+GAGGQ+VN T+SA+
Sbjct: 170 VQRIPVTESGGRIHTSTATVAVLPEMKDVDVYIDPKDIRIDTYRASGAGGQYVNKTESAI 229
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ +N+ A+ L+ +YE+ +EQ+ +
Sbjct: 230 RITHIPTGIVVTCQSERSQHQNKEKAMMVLRAKLYELARKEQDEK--------------- 274
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K G+G + + T + +R+TD
Sbjct: 275 ------------------------------LSSQRKNQIGSGERSEKIRTYNFPQNRVTD 304
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
HRI T+YN+ + G L +I + Q+D + ++ +L
Sbjct: 305 HRINLTIYNLQAVLDGD--LDLIIPKLMQYDIEEQLREL 341
>gi|40062805|gb|AAR37689.1| peptide chain release factor 1 [uncultured marine bacterium 440]
Length = 359
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 122/217 (56%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTS +VAVLP+ +++++ + EKDL+++ R+TG+GGQ VNTTDSAV
Sbjct: 184 VQRVPKTETQGRVHTSAATVAVLPEAEEVDIKIQEKDLRIDVYRSTGSGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+++SQ KNRA + L+ +YE + E+++ +RS
Sbjct: 244 RITHIPTGIVVTNQDEKSQHKNRAKGMKILRSRVYEAEREKKDK--------ERS----- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
KD K + +G + + T + R+TDHR
Sbjct: 291 ----------------------------KDRKNQI--GSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + EF+SG A EL ++R D + ++ L
Sbjct: 321 INVTLHKLKEFLSGDA-FGELNQNLRLQDQKIKLASL 356
>gi|386318705|ref|YP_006014868.1| peptide chain release factor 1 [Staphylococcus pseudintermedius
ED99]
gi|323463876|gb|ADX76029.1| peptide chain release factor 1 [Staphylococcus pseudintermedius
ED99]
Length = 358
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 45/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHIPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYAAQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+ + + M G L E++ + H+ ++ +L
Sbjct: 320 GLTLQKLDQIMEG--KLDEIVDALTMHEQTEKLKEL 353
>gi|32267276|ref|NP_861308.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449]
gi|46576742|sp|Q7VFA0.1|RF1_HELHP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|32263329|gb|AAP78374.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449]
Length = 355
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E++++ DLK++ R+ G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEININPNDLKIDVFRSGGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KN+ AL LK +YE + E Q + AR
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQN-------AQNKEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+T+ +G + + T + +R+TDHR
Sbjct: 291 ---------------------------------KTQVGSGDRSERIRTYNYPQNRLTDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y++ E M GG +L E I+ + H
Sbjct: 318 IGLTLYSLEEIMLGG-LLDEFINPLIAH 344
>gi|350273567|ref|YP_004884880.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
gi|348592780|dbj|BAK96741.1| peptide chain release factor RF-1 [Rickettsia japonica YH]
Length = 355
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ + R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRKKGQERADSRRGQIGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 NLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|163784022|ref|ZP_02178981.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880707|gb|EDP74252.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1]
Length = 359
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 4/104 (3%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ ++++V ++ DLK+ET RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESSGRIHTSTATVAVLPEAEEVDVEINPDDLKIETMRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFE 100
R+THIPTGI V Q++RSQ++NRA A+ A+LK IQ E
Sbjct: 246 RITHIPTGIVVSCQDERSQLQNRAKAMQILRARLKDYYDRIQQE 289
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+ET RA+GAGGQHVNTTDSA RIT
Sbjct: 216 VEINPDDLKIETMRASGAGGQHVNTTDSAVRIT 248
>gi|114327270|ref|YP_744427.1| peptide chain release factor 1 [Granulibacter bethesdensis CGDNIH1]
gi|119361545|sp|Q0BUJ8.1|RF1_GRABC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|114315444|gb|ABI61504.1| bacterial peptide chain release factor 1 (RF-1) [Granulibacter
bethesdensis CGDNIH1]
Length = 352
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D++V +DE DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEDVDVQVDEGDLRIDVYRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+P+GI V QE++SQ KNRA A+ LK +YE Q
Sbjct: 239 RITHLPSGIVVAMQEEKSQHKNRAKAMKILKARLYEQQ 276
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VQVDEGDLRIDVYRASGAGGQHVNKTESAVRIT 241
>gi|365856781|ref|ZP_09396791.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
gi|363717524|gb|EHM00896.1| peptide chain release factor 1 [Acetobacteraceae bacterium AT-5844]
Length = 351
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+++T RA+GAGGQHVN TDSAV
Sbjct: 178 VQRVPATETQGRIHTSTVTVAVLPEAEEVDVQINESDLRIDTYRASGAGGQHVNKTDSAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+G+ V QE+RSQ KNRA A+ L+ +Y+ Q
Sbjct: 238 RITHIPSGVVVAMQEERSQHKNRAKAMKVLRARLYDAQ 275
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++T RA+GAGGQHVN TDSA RIT
Sbjct: 208 VQINESDLRIDTYRASGAGGQHVNKTDSAVRIT 240
>gi|160935042|ref|ZP_02082428.1| hypothetical protein CLOLEP_03918 [Clostridium leptum DSM 753]
gi|156866495|gb|EDO59867.1| peptide chain release factor 1 [Clostridium leptum DSM 753]
Length = 358
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+EV ++ DLK++T R+ GAGGQH+N TDSA+
Sbjct: 184 VQRVPETETQGRIHTSTVTVAVLPEAEDVEVEINPSDLKIDTFRSGGAGGQHINKTDSAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTG+ VE Q++RSQ KN+ A+ LK + E + E+Q+N
Sbjct: 244 RITHLPTGLVVECQDERSQYKNKDKAMKVLKSRLLEAEREKQQN 287
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 14/161 (8%)
Query: 20 VAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPTGISVESQEDRS 78
+ +L PKD D++++ VE + GAGG+ + S RM + E++ ++
Sbjct: 96 LKILLLPKDPN---DDRNVIVEIR--GGAGGEEAALFSASLFRMYSM----YAETKRWKT 146
Query: 79 QIKNRANA--LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
+I N AN L K + + I E +R R R T+ I
Sbjct: 147 EILN-ANETELGGYKEISFMITGEGAYSRMKYESGVHRVQRVPETETQGRIHTSTVTVAV 205
Query: 137 LPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + V + DLK++T R+ GAGGQH+N TDSA RIT
Sbjct: 206 LPEAEDVEVEINPSDLKIDTFRSGGAGGQHINKTDSAIRIT 246
>gi|166032746|ref|ZP_02235575.1| hypothetical protein DORFOR_02461 [Dorea formicigenerans ATCC
27755]
gi|346306711|ref|ZP_08848865.1| peptide chain release factor 1 [Dorea formicigenerans 4_6_53AFAA]
gi|166027103|gb|EDR45860.1| peptide chain release factor 1 [Dorea formicigenerans ATCC 27755]
gi|345908069|gb|EGX77737.1| peptide chain release factor 1 [Dorea formicigenerans 4_6_53AFAA]
Length = 376
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 84/102 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D++VH+DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 203 VQRVPETESGGRIHTSTITVAVMPEAEDVDVHIDEKDIRIDVMRASGNGGQCVNTTDSAV 262
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH PTGI + SQ ++SQ++N+ A A L+ +Y+++ ++Q
Sbjct: 263 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRAKLYDLECQKQ 304
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
VH++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 233 VHIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 278
>gi|426401185|ref|YP_007020157.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
gi|425857853|gb|AFX98889.1| peptide chain release factor 1 [Candidatus Endolissoclinum patella
L2]
Length = 356
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 122/217 (56%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ K+I+VH++EKD++++ R+ GAGGQHVNTTDSAV
Sbjct: 183 VQRVPVTENQGRIHTSAATVAVLPEAKEIDVHIEEKDIRIDVYRSRGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KNRA A+ ++ +Y +Q + + R+A
Sbjct: 243 RITHIPTGVVVTQQDEKSQHKNRAKAMRIMRSRLYNMQRQASDE--------ARAA---- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
HR +++ +G + + T + R+TDHR
Sbjct: 291 HR-------------------------------KSQVGSGNRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+Y + + ++G A L+ELI + D R+ ++
Sbjct: 320 INLTIYKLDQVINGEA-LNELIEPLISDDEAERLAKI 355
>gi|307722037|ref|YP_003893177.1| peptide chain release factor 1 [Sulfurimonas autotrophica DSM
16294]
gi|306980130|gb|ADN10165.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurimonas
autotrophica DSM 16294]
Length = 355
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 118/214 (55%), Gaps = 46/214 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ D+E+ ++E DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDVEIEINENDLKIDVMRSSGCGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V +Q+ +SQ KNR A+ LK +Y++Q +E + +R+A+
Sbjct: 241 RITHLPSGLVVTNQDQKSQHKNREKAMKVLKARLYDLQMQEAQ----AEDAAQRAAQV-- 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + T + +RI+DHR
Sbjct: 295 -------------------------------------GTGDRSGRIRTYNYPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
I T+Y + E MSGG +L E+I + D+Q +I
Sbjct: 318 INLTLYRLNEIMSGG-LLDEIIEPLIA-DHQAKI 349
>gi|313144209|ref|ZP_07806402.1| peptide chain release factor 1 [Helicobacter cinaedi CCUG 18818]
gi|386761626|ref|YP_006235261.1| peptide chain release factor 1 [Helicobacter cinaedi PAGU611]
gi|313129240|gb|EFR46857.1| peptide chain release factor 1 [Helicobacter cinaedi CCUG 18818]
gi|385146642|dbj|BAM12150.1| peptide chain release factor 1 [Helicobacter cinaedi PAGU611]
gi|396078940|dbj|BAM32316.1| peptide chain release factor 1 [Helicobacter cinaedi ATCC BAA-847]
Length = 354
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 115/208 (55%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV+++ DLK++ R+ G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVNINPSDLKIDVFRSGGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KN+ AL LK +YE + E Q + + AR
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQNAQ-------NKEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+T+ +G + + T + +R+TDHR
Sbjct: 291 ---------------------------------KTQVGSGDRSERIRTYNYPQNRLTDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y++ E M GG +L E I+ + H
Sbjct: 318 IGLTLYSLEEIMLGG-LLDECINPLIAH 344
>gi|402901860|ref|XP_003913855.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 1
[Papio anubis]
gi|402901862|ref|XP_003913856.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 2
[Papio anubis]
Length = 445
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ E+ + ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDK-------CQQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|432849627|ref|XP_004066595.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Oryzias latipes]
Length = 441
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 113/212 (53%), Gaps = 49/212 (23%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T++V VLPQPKD+ +H++ KDL+V+T R+ GAGGQ VNTTD
Sbjct: 249 VQRIPEVGLSSRMQRIHTGTMTVIVLPQPKDLNLHIEPKDLRVDTFRSRGAGGQSVNTTD 308
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSA 116
SAVR+ H+PTGI+ E Q+ RSQ++NR A+ L+ RL + +E E R R
Sbjct: 309 SAVRIVHLPTGITAECQQTRSQLQNRETAMQMLRVRLYQSMMGKETEQRHTAR------- 361
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ + T + + + T + S DR+
Sbjct: 362 -------------------------------------KQQVGTRSQSERIRTYNFSQDRV 384
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
TDHR + ++ EFM GG L ELI+D+ +H
Sbjct: 385 TDHRTGYSTRDIKEFMKGGEELDELIADLLEH 416
>gi|403286306|ref|XP_003934438.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1,
mitochondrial [Saimiri boliviensis boliviensis]
Length = 446
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 119/210 (56%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV +LPQP +++V LD KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKLDPKDLRIDTFRARGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQI+N+ AL+ L+ +Y+
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQIRNKQIALSVLRARLYQ--------------------- 359
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
II + + R+ +T + L+V T+ A + + T + + DR+T
Sbjct: 360 QIIEKNK------RQQHST------------RKLQVGTR----AQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 398 DHRIAYEVRDIKEFVCGGKGLDQLIQKLLQ 427
>gi|440909251|gb|ELR59179.1| Peptide chain release factor 1, mitochondrial [Bos grunniens mutus]
Length = 448
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLP P +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 262 VQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 321
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E+ + +RSAR
Sbjct: 322 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDK-------CQQRSAR 374
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 375 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 398
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF+ G L +LI + Q
Sbjct: 399 DHRIAYEVRNIKEFLCGEKCLDQLIQRLLQ 428
>gi|350546865|ref|ZP_08916227.1| peptide chain release factor 1 [Mycoplasma iowae 695]
gi|349503606|gb|EGZ31187.1| peptide chain release factor 1 [Mycoplasma iowae 695]
Length = 324
Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 80/97 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+E+ + E DL+++T RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPETEAKGRVHTSTVTVAVLPEVEDVEIVIKESDLRIDTYRASGAGGQHVNRTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI 97
R+THIPTG+ V QE +SQI+NRA A+ LK ++E+
Sbjct: 246 RLTHIPTGVVVACQEGKSQIENRATAMKMLKSKLWEL 282
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 27/31 (87%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++E DL+++T RA+GAGGQHVN T+SA R+T
Sbjct: 218 IKESDLRIDTYRASGAGGQHVNRTESAVRLT 248
>gi|170289255|ref|YP_001739493.1| peptide chain release factor 1 [Thermotoga sp. RQ2]
gi|281412857|ref|YP_003346936.1| peptide chain release factor 1 [Thermotoga naphthophila RKU-10]
gi|170176758|gb|ACB09810.1| peptide chain release factor 1 [Thermotoga sp. RQ2]
gi|281373960|gb|ADA67522.1| peptide chain release factor 1 [Thermotoga naphthophila RKU-10]
Length = 342
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRIPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ +NR AL L+ +Y++Q E++E R I
Sbjct: 221 RITHIPTGIVVSCQNERSQYQNRQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S I TG + + T + +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T Y + E + G L E+IS + +HD + ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVLG 334
>gi|70725918|ref|YP_252832.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
gi|119361616|sp|Q4L7Z9.1|RF1_STAHJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68446642|dbj|BAE04226.1| peptide chain release factor 1 [Staphylococcus haemolyticus
JCSC1435]
Length = 358
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+TH+PTG+ S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|256827314|ref|YP_003151273.1| peptide chain release factor 1 [Cryptobacterium curtum DSM 15641]
gi|256583457|gb|ACU94591.1| bacterial peptide chain release factor 1 (bRF-1) [Cryptobacterium
curtum DSM 15641]
Length = 357
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ ++EV + ++DL+++ RA G GGQ VNTTDSAV
Sbjct: 182 VQRVPKTESQGRIHTSTATVAVLPEADEVEVDVKQEDLRIDVYRAGGPGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V+SQ+ +SQ++N+ A+A L+ +YE EEQ R+A
Sbjct: 242 RITHLPTGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLEEQ-----------RAAEGAE 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
R + TG + + T + DR+TDHR
Sbjct: 291 RRAQI--------------------------------GTGDRSEKIRTYNGPQDRVTDHR 318
Query: 180 I-QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQ 215
I YN +GGA L +LI+ ++ D +++Q
Sbjct: 319 IGYNGTYNGILMNAGGAGLEDLITALQAADRAQKLEQ 355
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query: 89 KLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA-VHLE 147
K ++ E++FE +R V+ V K ++ IH + + + LP + V ++
Sbjct: 165 KGDKVYSEMKFESGVHR--VQRVPKTESQGRIHTSTATV-------AVLPEADEVEVDVK 215
Query: 148 EKDLKVETKRATGAGGQHVNTTDSADRIT 176
++DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 216 QEDLRIDVYRAGGPGGQCVNTTDSAVRIT 244
>gi|78042486|ref|NP_001030185.1| peptide chain release factor 1, mitochondrial [Bos taurus]
gi|118573310|sp|Q3MHI7.1|RF1M_BOVIN RecName: Full=Peptide chain release factor 1, mitochondrial;
Short=MRF-1; Short=MtRF-1; Flags: Precursor
gi|75773697|gb|AAI05225.1| Mitochondrial translational release factor 1 [Bos taurus]
gi|296481791|tpg|DAA23906.1| TPA: peptide chain release factor 1, mitochondrial precursor [Bos
taurus]
Length = 447
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 113/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLP P +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 262 VQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 321
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E+ + +RSAR
Sbjct: 322 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDK-------CQQRSAR 374
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 375 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 398
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF+ G L +LI + Q
Sbjct: 399 DHRIAYEVRNIKEFLCGEKCLDQLIQRLLQ 428
>gi|170746587|ref|YP_001752847.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
gi|226739115|sp|B1M766.1|RF1_METRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|170653109|gb|ACB22164.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM
2831]
Length = 361
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+++ DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEEVDIHVNDADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V QE+RSQ KNRA A+A L+ +YE + K SAR
Sbjct: 246 RITHLPTGIVVFVQEERSQHKNRARAMALLRARLYEAERN-----------AKDSARA-- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 293 ----------------------------ADRKAQV--GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGTAL 339
>gi|427409351|ref|ZP_18899553.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
gi|425711484|gb|EKU74499.1| peptide chain release factor 1 [Sphingobium yanoikuyae ATCC 51230]
Length = 363
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VA+LP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ IYE + E
Sbjct: 247 RITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RT+S R+ +G + + T + R+TDHR
Sbjct: 287 -RTQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G L E+I + D R+ QL
Sbjct: 324 INLTLHRLPEILEGPG-LAEVIDALVAEDEAARLAQL 359
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 82 NRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSC 141
N AKLK FE +R VT+ R IH + + + EP
Sbjct: 170 NGTGVFAKLK-------FESGVHRVQRVPVTESGGR--IHTSAATVAILPEPEEV----- 215
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 216 -DVQIADSDLKIDIYRASGAGGQHVNTTDSAVRIT 249
>gi|381199262|ref|ZP_09906412.1| peptide chain release factor 1 [Sphingobium yanoikuyae XLDN2-5]
Length = 363
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 115/217 (52%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VA+LP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ IYE + E
Sbjct: 247 RITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RT+S R+ +G + + T + R+TDHR
Sbjct: 287 -RTQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G L E+I + D R+ QL
Sbjct: 324 INLTLHRLPEILEGPG-LAEVIDALVAEDEAARLAQL 359
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 82 NRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSC 141
N AKLK FE +R VT+ R IH + + + EP
Sbjct: 170 NGTGVFAKLK-------FESGVHRVQRVPVTESGGR--IHTSAATVAILPEPEEV----- 215
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 216 -DVQIADSDLKIDIYRASGAGGQHVNTTDSAVRIT 249
>gi|407775618|ref|ZP_11122911.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
gi|407281295|gb|EKF06858.1| peptide chain release factor 1 [Thalassospira profundimaris WP0211]
Length = 360
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 110/201 (54%), Gaps = 42/201 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++ +D KDL+++T R+ GAGGQHVNTTDSAV
Sbjct: 185 VQRVPVTEGGGRIHTSAATVAVLPEAEEVDIKIDPKDLRIDTYRSQGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ SQE +SQ KN+ A+ L +Y+ +E+E++ R ++S
Sbjct: 245 RITHIPTGVVAASQEAKSQHKNKEKAMKMLMSRLYD---QERESKDSERAADRKSQVGSG 301
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 302 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 322
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+Y + +F++GG + E+I
Sbjct: 323 NLTLYRLDDFIAGGPAVDEMI 343
>gi|418326961|ref|ZP_12938136.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|418413304|ref|ZP_12986546.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
gi|420164484|ref|ZP_14671213.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|420169228|ref|ZP_14675831.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|420186327|ref|ZP_14692398.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|365224067|gb|EHM65337.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU071]
gi|394231589|gb|EJD77215.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM095]
gi|394231691|gb|EJD77315.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM087]
gi|394252544|gb|EJD97576.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM040]
gi|410879191|gb|EKS27042.1| peptide chain release factor 1 [Staphylococcus epidermidis
BVS058A4]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|27468634|ref|NP_765271.1| peptide chain release factor 1 [Staphylococcus epidermidis ATCC
12228]
gi|57867593|ref|YP_189289.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251812171|ref|ZP_04826644.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876474|ref|ZP_06285340.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|293366082|ref|ZP_06612770.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646882|ref|ZP_12296734.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|417656917|ref|ZP_12306595.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|417660256|ref|ZP_12309845.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|417909017|ref|ZP_12552767.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|417912470|ref|ZP_12556162.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|417913921|ref|ZP_12557582.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|418604057|ref|ZP_13167424.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|418607532|ref|ZP_13170762.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|418609372|ref|ZP_13172525.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|418613195|ref|ZP_13176211.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|418617908|ref|ZP_13180794.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|418622347|ref|ZP_13185099.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|418623907|ref|ZP_13186601.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|418627641|ref|ZP_13190213.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|418629960|ref|ZP_13192453.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|418663751|ref|ZP_13225260.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|419768484|ref|ZP_14294606.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|419771604|ref|ZP_14297655.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|420166561|ref|ZP_14673245.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|420171719|ref|ZP_14678254.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|420173643|ref|ZP_14680134.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|420182089|ref|ZP_14688231.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|420186950|ref|ZP_14692974.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|420195935|ref|ZP_14701719.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|420202831|ref|ZP_14708419.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|420207939|ref|ZP_14713424.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|420210298|ref|ZP_14715727.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|420215230|ref|ZP_14720501.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|420216735|ref|ZP_14721933.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|420220977|ref|ZP_14725932.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|420223650|ref|ZP_14728545.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|420226177|ref|ZP_14730999.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|420228591|ref|ZP_14733340.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|420230977|ref|ZP_14735654.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|420233583|ref|ZP_14738191.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|420236013|ref|ZP_14740544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|421608826|ref|ZP_16050038.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
gi|32171533|sp|Q8CNI7.1|RF1_STAES RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71153098|sp|Q5HMA4.1|RF1_STAEQ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27316181|gb|AAO05315.1|AE016749_261 peptide chain release factor RF-1 [Staphylococcus epidermidis ATCC
12228]
gi|57638251|gb|AAW55039.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A]
gi|251804268|gb|EES56925.1| peptide chain release factor 1 [Staphylococcus epidermidis
BCM-HMP0060]
gi|281294726|gb|EFA87254.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135]
gi|291319805|gb|EFE60163.1| peptide chain release factor RF1 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329726142|gb|EGG62614.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144]
gi|329734173|gb|EGG70491.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045]
gi|329735695|gb|EGG71978.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028]
gi|341650682|gb|EGS74498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU105]
gi|341654379|gb|EGS78126.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU109]
gi|341654657|gb|EGS78396.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU037]
gi|374404386|gb|EHQ75360.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU057]
gi|374405853|gb|EHQ76764.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU041]
gi|374407774|gb|EHQ78622.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU065]
gi|374411289|gb|EHQ82006.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU081]
gi|374816631|gb|EHR80832.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU117]
gi|374817169|gb|EHR81355.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU120]
gi|374826941|gb|EHR90816.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU123]
gi|374829087|gb|EHR92901.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU126]
gi|374829151|gb|EHR92964.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU125]
gi|374832479|gb|EHR96189.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU127]
gi|383359848|gb|EID37258.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-250]
gi|383361102|gb|EID38484.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-K]
gi|394233568|gb|EJD79169.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM088]
gi|394236834|gb|EJD82337.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM070]
gi|394239680|gb|EJD85115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM067]
gi|394250553|gb|EJD95735.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM049]
gi|394256916|gb|EJE01840.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM039]
gi|394262536|gb|EJE07298.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM021]
gi|394269010|gb|EJE13555.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM018]
gi|394274959|gb|EJE19354.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM008]
gi|394276532|gb|EJE20870.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM003]
gi|394282510|gb|EJE26703.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05005]
gi|394285427|gb|EJE29506.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04008]
gi|394287148|gb|EJE31115.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH08001]
gi|394291414|gb|EJE35226.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05001]
gi|394292663|gb|EJE36403.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH06004]
gi|394294625|gb|EJE38296.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH05003]
gi|394295860|gb|EJE39496.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH04003]
gi|394299865|gb|EJE43393.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051668]
gi|394301649|gb|EJE45104.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIH051475]
gi|406655479|gb|EKC81906.1| peptide chain release factor 1 [Staphylococcus epidermidis AU12-03]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|94496666|ref|ZP_01303242.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
gi|94424026|gb|EAT09051.1| peptide chain release factor 1 [Sphingomonas sp. SKA58]
Length = 361
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADADLKIDIYRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI V Q++RSQ KN+A A+ L+ +YE + E +N
Sbjct: 245 RITHVPTGIVVTQQDERSQHKNKAKAMQVLRARLYEAERERTQN 288
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 15/95 (15%)
Query: 82 NRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSC 141
N A AKLK FE +R VT+ R IH + + + EP
Sbjct: 168 NGAGVFAKLK-------FESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPEEV----- 213
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 214 -DVQIADADLKIDIYRASGAGGQHVNTTDSAVRIT 247
>gi|375091145|ref|ZP_09737443.1| peptide chain release factor 1 [Helcococcus kunzii ATCC 51366]
gi|374564316|gb|EHR35614.1| peptide chain release factor 1 [Helcococcus kunzii ATCC 51366]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 109/197 (55%), Gaps = 49/197 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEK-DLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTST +VAVLP+ I++ +DE +L+++ R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPQTETQGRIHTSTATVAVLPEAGKIDIEIDESTELRIDYYRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V Q++RSQIKN+A A+ + +Y+ + E+Q
Sbjct: 243 VRITHLPTGIVVACQDERSQIKNKAKAMNIMYAKLYDFKLEQQ----------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
+K+L + K G G + + T + R+T
Sbjct: 286 ----------------------------QKELSEDRKTQVGTGDRSEKIRTYNFPQGRVT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHRI +T+Y + F++G
Sbjct: 318 DHRINKTIYQLDNFLNG 334
>gi|420212554|ref|ZP_14717903.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
gi|394279675|gb|EJE23978.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM001]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|254796771|ref|YP_003081607.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
gi|254590013|gb|ACT69375.1| peptide chain release factor 1 [Neorickettsia risticii str.
Illinois]
Length = 367
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 82/98 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +VAVLP+P+D++V +++KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ KNRA A+ LK +YEI+
Sbjct: 246 RVTHIPTGIVVIQQDEKSQHKNRAKAMKVLKVRLYEIE 283
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
ANA + +++FE +R V+ V + + IH + + + EP
Sbjct: 164 ANASISGSEVFAKLKFESGVHR--VQRVPETESAGRIHTSTATVAVLPEPEDV------D 215
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +KDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 216 VKINDKDLRIDVYRSSGPGGQSVNTTDSAVRVT 248
>gi|197120070|ref|YP_002140497.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem]
gi|197089430|gb|ACH40701.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem]
Length = 359
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAV+P+ +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG V QE+RSQIKNRA A+ LK +R + +V +++A+
Sbjct: 244 RITHLPTGTVVACQEERSQIKNRAKAMKVLK------------SRILDNIVMEQNAK--- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K G+G + + T + R+TD
Sbjct: 289 ------------------------------LAADRKSQVGSGDRSERIRTYNFPQGRMTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E+ +RQH YQ
Sbjct: 319 HRIGLTLYRLDAIMAGD--IAEIADSLRQH-YQM 349
>gi|78778239|ref|YP_394554.1| peptide chain release factor 1 [Sulfurimonas denitrificans DSM
1251]
gi|119361635|sp|Q30NW2.1|RF1_SULDN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|78498779|gb|ABB45319.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurimonas
denitrificans DSM 1251]
Length = 355
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+E+ ++E DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEIQINENDLKIDVMRSSGCGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V +Q+ +SQ KN+ A+ LK +Y+++ +E + + RSA+
Sbjct: 241 RITHLPTGLVVTNQDQKSQHKNKEKAMKVLKARLYDLEMQEA----IAKDSANRSAQVGT 296
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
I + P +R++DHRI
Sbjct: 297 GDRSGRIRTYNYP--------------------------------------QNRMSDHRI 318
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y +AE M GG M + LI+D
Sbjct: 319 TLTLYRLAEIMQGGLMDEIIEPLIAD 344
>gi|340779042|ref|ZP_08698985.1| peptide chain release factor 1 [Acetobacter aceti NBRC 14818]
Length = 352
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAVLP+ ++++V +DEKDL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTITVAVLPEAEEVDVQIDEKDLRIDVYRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V QE++SQ KNRA A+ L+ +YE Q
Sbjct: 239 RITHLPTGVVVAMQEEKSQHKNRAKAMKILRSRLYEQQ 276
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++EKDL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VQIDEKDLRIDVYRASGAGGQHVNKTESAVRIT 241
>gi|314934187|ref|ZP_07841548.1| peptide chain release factor 1 [Staphylococcus caprae C87]
gi|313653092|gb|EFS16853.1| peptide chain release factor 1 [Staphylococcus caprae C87]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 45/201 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYASQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RVRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+ + + M G L E+I
Sbjct: 320 GLTLQKLGQIMEGN--LDEII 338
>gi|242241525|ref|ZP_04795970.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|416128250|ref|ZP_11597255.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|418328423|ref|ZP_12939536.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614626|ref|ZP_13177589.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|418633631|ref|ZP_13196039.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|420174286|ref|ZP_14680739.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|420178547|ref|ZP_14684877.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|420181341|ref|ZP_14687544.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|420191022|ref|ZP_14696959.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|420193551|ref|ZP_14699402.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|420204945|ref|ZP_14710483.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
gi|242235068|gb|EES37379.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144]
gi|319399600|gb|EFV87855.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909]
gi|365232022|gb|EHM73037.1| peptide chain release factor 1 [Staphylococcus epidermidis
14.1.R1.SE]
gi|374819516|gb|EHR83638.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU118]
gi|374838969|gb|EHS02502.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU129]
gi|394245220|gb|EJD90537.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM061]
gi|394246270|gb|EJD91531.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM057]
gi|394246689|gb|EJD91943.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM053]
gi|394258120|gb|EJE03012.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM037]
gi|394259818|gb|EJE04649.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM023]
gi|394271666|gb|EJE16155.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM015]
Length = 358
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|209965909|ref|YP_002298824.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
gi|209959375|gb|ACJ00012.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW]
Length = 360
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 121/217 (55%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++H++EKDL+++ R+ G+GGQ VNTTDSAV
Sbjct: 187 VQRVPETEAGGRIHTSAATVAVLPEAEEVDIHIEEKDLRIDVFRSQGSGGQSVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PT I V+ Q+++SQ KN+A AL L+ +YEI E++ R R ++R
Sbjct: 247 RITHLPTNIVVQCQDEKSQHKNKAKALKVLRARLYEI---ERQRRDSERAASRR------ 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
T+ +G + + T + R+TDHR
Sbjct: 298 ----------------------------------TQVGSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+Y + + M+G A L EL+ + D R+ +L
Sbjct: 324 INLTLYKIDKVMAGEA-LDELVDALVASDEAERLAEL 359
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 29/182 (15%)
Query: 2 QRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
+R+P+ E+ + +A+LP+ + DEK+ +E + TG G +
Sbjct: 90 RRIPELERR-------IMLALLPKDE-----ADEKNAILEVRAGTG-GDEAALFAAELFE 136
Query: 62 MTHIPTGI------SVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRS 115
M GI ++E E A+A + + ++FE +R V+ V +
Sbjct: 137 MYRRYAGIQGWRFETIEVNETGLGGYKEASASITGRNVFRRLKFESGVHR--VQRVPETE 194
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADR 174
A IH + + + LP + +H+EEKDL+++ R+ G+GGQ VNTTDSA R
Sbjct: 195 AGGRIHTSAATV-------AVLPEAEEVDIHIEEKDLRIDVFRSQGSGGQSVNTTDSAVR 247
Query: 175 IT 176
IT
Sbjct: 248 IT 249
>gi|398382459|ref|ZP_10540544.1| peptide chain release factor 1 [Sphingobium sp. AP49]
gi|397726565|gb|EJK86998.1| peptide chain release factor 1 [Sphingobium sp. AP49]
Length = 363
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 116/217 (53%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VA+LP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAILPEPEEVDVQIADGDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ IYE + E
Sbjct: 247 RITHLPTGIVVTQQDERSQHKNKAKAMQVLRARIYEAERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RT+S R+ +G + + T + R+TDHR
Sbjct: 287 -RTQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G ++ E+I + D R+ QL
Sbjct: 324 INLTMHRLPEILEGPGLV-EVIDALVAEDEAARLAQL 359
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 82 NRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSC 141
N AKLK FE +R VT+ R IH + + + EP
Sbjct: 170 NGTGVFAKLK-------FESGVHRVQRVPVTESGGR--IHTSAATVAILPEPEEV----- 215
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 216 -DVQIADGDLKIDIYRASGAGGQHVNTTDSAVRIT 249
>gi|254446350|ref|ZP_05059826.1| peptide chain release factor 1 [Verrucomicrobiae bacterium DG1235]
gi|198260658|gb|EDY84966.1| peptide chain release factor 1 [Verrucomicrobiae bacterium DG1235]
Length = 408
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ ++++V ++ +DL+V T RA+GAGGQHVNTTDSA+
Sbjct: 230 VQRVPETESQGRIHTSTATVAVLPEAEEVDVEINPQDLEVTTCRASGAGGQHVNTTDSAI 289
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
+ H PTGI+V ++RSQIKNRA A+ L I +++ EE+ +++
Sbjct: 290 NIVHKPTGITVYCADERSQIKNRAKAMKVLYSRILQVKQEEERSKYA------------- 336
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E + +V TG + + T + R+TDHR
Sbjct: 337 --------------------------ENRKKQV----GTGDRSERIRTYNFPQSRLTDHR 366
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T++++ M G + E++ + D + +ID L+S
Sbjct: 367 IGLTLHSLPAVMDGD--MEEILETLENEDMRLKIDALMS 403
>gi|387131029|ref|YP_006293919.1| peptide chain release factor 1 [Methylophaga sp. JAM7]
gi|386272318|gb|AFJ03232.1| Peptide chain release factor 1 [Methylophaga sp. JAM7]
Length = 362
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 56/221 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I E+ ++ DLKV+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAILPEVDEIDEIAINPADLKVDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L+ I Q E+Q++
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRAKAMSVLQSRIMAAQVEKQQSE-------------- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKR---ATGAGGQHVNTTDSAD-RI 175
+ ET+R +G + + T + RI
Sbjct: 292 --------------------------------QAETRRLLVGSGDRSERIRTYNYPQGRI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
TDHRI T+Y + E M+G L E+I + +++ DQL
Sbjct: 320 TDHRINLTLYKLNEIMAGS--LEEVIEPLIN---EYQADQL 355
>gi|363898293|ref|ZP_09324827.1| peptide chain release factor 1 [Oribacterium sp. ACB7]
gi|361956029|gb|EHL09348.1| peptide chain release factor 1 [Oribacterium sp. ACB7]
Length = 358
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D+EV ++ D+K+E R++GAGGQH+N T SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEVEDVEVEINPADVKMEVFRSSGAGGQHINKTSSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E QE+RSQ++NR A+ L+ +YEI+ E+Q+
Sbjct: 243 RLIHVPTGMVAECQEERSQVQNREKAMRLLRARLYEIELEKQQKE--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ EEK ++ TG + + T + R+TDHR
Sbjct: 288 ------------------------NAEEK----RSQLGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I+ T+YN+ + G
Sbjct: 320 IKLTLYNIDAVLGG 333
>gi|334345900|ref|YP_004554452.1| peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
gi|334102522|gb|AEG49946.1| Peptide chain release factor 1 [Sphingobium chlorophenolicum L-1]
Length = 363
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+GI V Q++RSQ KN+A A+ L+ IYE++ E
Sbjct: 247 RITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEVERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R +S R+ +G + + T + R+TDHR
Sbjct: 287 -RAQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G L E+I + D R+ QL
Sbjct: 324 INLTLHRLPEILEGPG-LSEVIDALVAEDEAARLAQL 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V + + DLK
Sbjct: 174 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPEEV------DVQIADSDLK 225
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 226 IDIYRASGAGGQHVNTTDSAVRIT 249
>gi|260792424|ref|XP_002591215.1| hypothetical protein BRAFLDRAFT_62179 [Branchiostoma floridae]
gi|229276418|gb|EEN47226.1| hypothetical protein BRAFLDRAFT_62179 [Branchiostoma floridae]
Length = 353
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 85/101 (84%), Gaps = 1/101 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK+GR+HTST++VAVLPQPK+I+ D+ + K+ETK+A+GAGGQHVN T+SAV
Sbjct: 168 VQRVPKTEKAGRVHTSTMTVAVLPQPKEIDNTWDKSEFKIETKKASGAGGQHVNKTESAV 227
Query: 61 RMTHIPTG-ISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+ HIPTG +VE Q++RSQ++NRA A+ ++ +Y+++ +
Sbjct: 228 RIVHIPTGENAVECQQERSQLRNRAIAMTTIQARLYQMKLD 268
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 147 EEKDLKVETKRATGAGGQHVNTTDSADRI 175
++ + K+ETK+A+GAGGQHVN T+SA RI
Sbjct: 201 DKSEFKIETKKASGAGGQHVNKTESAVRI 229
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 158 ATGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
T A + + T + + DR+TDHR ++N+ +F+ GG L E+I ++QH
Sbjct: 283 GTAARSEKIRTYNFTQDRVTDHRAGVNMFNLQDFLLGGDRLDEMIHTVQQH 333
>gi|335046352|ref|ZP_08539375.1| peptide chain release factor 1 [Oribacterium sp. oral taxon 108
str. F0425]
gi|333760138|gb|EGL37695.1| peptide chain release factor 1 [Oribacterium sp. oral taxon 108
str. F0425]
Length = 369
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D+EV ++ D+K+E R++GAGGQH+N T SAV
Sbjct: 194 VQRVPETESGGRIHTSTATVAVMPEVEDVEVEINPADVKMEVFRSSGAGGQHINKTSSAV 253
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E QE+RSQ++NR A+ L+ +YEI+ E+Q+
Sbjct: 254 RLIHVPTGMVAECQEERSQVQNREKAMRLLRARLYEIELEKQQKE--------------- 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ EEK ++ TG + + T + R+TDHR
Sbjct: 299 ------------------------NAEEK----RSQLGTGDRSEKIRTYNFPQGRVTDHR 330
Query: 180 IQRTVYNVAEFMSG 193
I+ T+YN+ + G
Sbjct: 331 IKLTLYNIDAVLGG 344
>gi|363890968|ref|ZP_09318262.1| peptide chain release factor 1 [Eubacteriaceae bacterium CM5]
gi|361962735|gb|EHL15844.1| peptide chain release factor 1 [Eubacteriaceae bacterium CM5]
Length = 357
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 80/100 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+EV+LD D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSTVTVAVLPEAEDVEVNLDLNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+THIPTGI + Q+++SQ+KN+ A LK +Y+I+ E
Sbjct: 243 RLTHIPTGIVISMQDEKSQLKNKEKAFKILKAKLYDIELE 282
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V+L+ D++V+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VNLDLNDVRVDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|193786181|dbj|BAG51464.1| unnamed protein product [Homo sapiens]
Length = 445
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR------QQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|149730260|ref|XP_001492759.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Equus caballus]
Length = 446
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 115/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E++ R ++SAR
Sbjct: 321 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKDKR------QQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF+ G L LI + Q
Sbjct: 398 DHRIAYEVRNIKEFLHGEKCLDHLIQRLLQ 427
>gi|29840418|ref|NP_829524.1| peptide chain release factor 1 [Chlamydophila caviae GPIC]
gi|33301431|sp|Q822M2.1|RF1_CHLCV RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|29834767|gb|AAP05402.1| peptide chain release factor 1 [Chlamydophila caviae GPIC]
Length = 361
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 115/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + ++ RSA+
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRRQK----EASAMRSAQV 298
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
+G + + T + S +R+TD
Sbjct: 299 ---------------------------------------GSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+YN+ + M G L + S + H Y
Sbjct: 320 HRIGLTLYNLDKVMEGD--LDAITSALVSHAY 349
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPT--- 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKVLENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASTK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGAAVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|119629057|gb|EAX08652.1| mitochondrial translational release factor 1, isoform CRA_c [Homo
sapiens]
Length = 487
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 302 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 361
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 362 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR------QQQSAR 414
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 415 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 438
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 439 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 468
>gi|390169627|ref|ZP_10221560.1| peptide chain release factor 1 [Sphingobium indicum B90A]
gi|389587631|gb|EIM65693.1| peptide chain release factor 1 [Sphingobium indicum B90A]
Length = 363
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 115/217 (52%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+GI V Q++RSQ KN+A A+ L+ IYE++ E
Sbjct: 247 RITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEVERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R +S R+ +G + + T + R+TDHR
Sbjct: 287 -RAQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G L E+I + D R+ QL
Sbjct: 324 INLTLHRLPEILEGPG-LSEVIDALVAEDEAARLAQL 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V + + DLK
Sbjct: 174 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPEEV------DVQIADSDLK 225
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 226 IDIYRASGAGGQHVNTTDSAVRIT 249
>gi|169838094|ref|ZP_02871282.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [candidate division
TM7 single-cell isolate TM7a]
Length = 190
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 83/103 (80%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ D+ EV ++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 51 VQRVPATESSGRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDSA 110
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH+PTG+ V SQ+ RSQIKN+ A+ L +YE++ E+Q
Sbjct: 111 VRITHLPTGLVVTSQDGRSQIKNKEAAMKVLVSKLYEMECEKQ 153
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 82 VEINPSDLKIDTYRSSGAGGQHVNTTDSAVRIT 114
>gi|16125109|ref|NP_419673.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
gi|13422113|gb|AAK22841.1| peptide chain release factor 1 [Caulobacter crescentus CB15]
Length = 385
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + E DL+++T R++GAGGQHVN TDSAV
Sbjct: 209 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAV 268
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q E + SAR+
Sbjct: 269 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQREALD-----------SARSEA 316
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 317 RKSQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 344
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+A M G A L ++I+ + D R+ L
Sbjct: 345 INLTLYNLARIMEGDA-LDDVINPLIAEDQAERLASL 380
>gi|363895275|ref|ZP_09322273.1| peptide chain release factor 1 [Eubacteriaceae bacterium ACC19a]
gi|361957713|gb|EHL11018.1| peptide chain release factor 1 [Eubacteriaceae bacterium ACC19a]
Length = 357
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 80/100 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+EV+LD D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSTVTVAVLPEAEDVEVNLDLNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+THIPTGI + Q+++SQ+KN+ A LK +Y+I+ E
Sbjct: 243 RLTHIPTGIVISMQDEKSQLKNKEKAFKILKAKLYDIELE 282
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V+L+ D++V+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VNLDLNDVRVDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|34577120|ref|NP_004285.2| peptide chain release factor 1, mitochondrial [Homo sapiens]
gi|114651371|ref|XP_509647.2| PREDICTED: peptide chain release factor 1, mitochondrial isoform 5
[Pan troglodytes]
gi|114651373|ref|XP_001150158.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 3
[Pan troglodytes]
gi|397470684|ref|XP_003806947.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 1
[Pan paniscus]
gi|62512140|sp|O75570.2|RF1M_HUMAN RecName: Full=Peptide chain release factor 1, mitochondrial;
Short=MRF-1; Short=MtRF-1; Flags: Precursor
gi|27503783|gb|AAH42196.1| Mitochondrial translational release factor 1 [Homo sapiens]
gi|119629053|gb|EAX08648.1| mitochondrial translational release factor 1, isoform CRA_a [Homo
sapiens]
gi|119629054|gb|EAX08649.1| mitochondrial translational release factor 1, isoform CRA_a [Homo
sapiens]
gi|119629056|gb|EAX08651.1| mitochondrial translational release factor 1, isoform CRA_a [Homo
sapiens]
gi|119629058|gb|EAX08653.1| mitochondrial translational release factor 1, isoform CRA_a [Homo
sapiens]
gi|410209562|gb|JAA02000.1| mitochondrial translational release factor 1 [Pan troglodytes]
gi|410249800|gb|JAA12867.1| mitochondrial translational release factor 1 [Pan troglodytes]
gi|410295502|gb|JAA26351.1| mitochondrial translational release factor 1 [Pan troglodytes]
gi|410333659|gb|JAA35776.1| mitochondrial translational release factor 1 [Pan troglodytes]
Length = 445
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR------QQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|3328106|gb|AAD12759.1| translational release factor 1 [Homo sapiens]
Length = 445
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 115/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR------QQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|420200809|ref|ZP_14706449.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
gi|394267553|gb|EJE12140.1| peptide chain release factor 1 [Staphylococcus epidermidis
NIHLM031]
Length = 358
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIKIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IKIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|410994938|gb|AFV96403.1| hypothetical protein B649_00445 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 355
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 113/207 (54%), Gaps = 47/207 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+EV ++E DLK++ R++G+GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEVIINENDLKIDVMRSSGSGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V +Q+ +SQ KN+ A+ LK IY++Q +E + + +
Sbjct: 241 RITHLPTGIVVTNQDQKSQHKNKDKAMQILKARIYDMQMQEAKEKEMS------------ 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E KD + TG + T + +RI+DHR
Sbjct: 289 --------------------------ERKD-----QVGTGDRSGRIRTYNYPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAM---LHELISD 203
I T+Y + E M GG M + LI+D
Sbjct: 318 ITLTLYRLEEIMQGGLMDDIIEPLIAD 344
>gi|332241803|ref|XP_003270069.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 1
[Nomascus leucogenys]
Length = 445
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V L+ KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLNPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDRR------QQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|223043916|ref|ZP_03613957.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|417906667|ref|ZP_12550448.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
gi|222442631|gb|EEE48735.1| peptide chain release factor 1 [Staphylococcus capitis SK14]
gi|341597669|gb|EGS40215.1| peptide chain release factor 1 [Staphylococcus capitis VCU116]
Length = 358
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 45/201 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYASQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+ + + M G L E+I
Sbjct: 320 GLTLQKLGQIMEGN--LDEII 338
>gi|297172147|gb|ADI23128.1| protein chain release factor A [uncultured gamma proteobacterium
HF0770_09E07]
Length = 359
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 112/204 (54%), Gaps = 47/204 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTST +VAVLP+ DIE LD +++V+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPLTESQGRIHTSTATVAVLPEIDDIEEKDLDMSEIRVDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+P+GI VE Q+DRSQ KN+A AL L IY+I+ ++ E
Sbjct: 244 VRLTHLPSGIVVECQDDRSQHKNKAKALGLLSSKIYDIEKQKIE---------------- 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+EK + ++ TG + + T + RITDH
Sbjct: 288 ---------------------------QEKASERKSLVGTGDRSEKIRTYNFPQGRITDH 320
Query: 179 RIQRTVYNVAEFMSG--GAMLHEL 200
R++ T+YN+ F+ G ML+ L
Sbjct: 321 RLKLTLYNIDSFIDGDIDEMLNSL 344
>gi|404495237|ref|YP_006719343.1| peptide chain release factor 1 [Geobacter metallireducens GS-15]
gi|418065704|ref|ZP_12703075.1| peptide chain release factor 1 [Geobacter metallireducens RCH3]
gi|119361544|sp|Q39YQ1.1|RF1_GEOMG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|78192856|gb|ABB30623.1| peptide chain release factor 1 [Geobacter metallireducens GS-15]
gi|373561784|gb|EHP88010.1| peptide chain release factor 1 [Geobacter metallireducens RCH3]
Length = 355
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 114/214 (53%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DIE+ ++ DLK++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAVLPEAEDIEIDINPVDLKIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI VE Q++RSQIKNR+ A+ LK I + +EQ R
Sbjct: 240 RITHLPTGIVVECQDERSQIKNRSKAMKVLKSRILDGLQQEQNAR--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------IAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M G + E++ +R H YQ
Sbjct: 315 HRIGLTLYRLDALMEGD--IAEVVDSLRAH-YQM 345
>gi|269123393|ref|YP_003305970.1| peptide chain release factor 1 [Streptobacillus moniliformis DSM
12112]
gi|268314719|gb|ACZ01093.1| peptide chain release factor 1 [Streptobacillus moniliformis DSM
12112]
Length = 358
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 82/103 (79%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE SGR+HTST++VAVLP+ D+E V ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPDTEASGRIHTSTITVAVLPEIDDVEQVAINPSDLQIDTYRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH PTGI V SQ+ RSQIKN+ A+ L +YEI+ E+Q
Sbjct: 243 VRITHKPTGIVVTSQDGRSQIKNKEAAMKVLASKLYEIEVEKQ 285
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 214 VAINPSDLQIDTYRSSGAGGQHVNTTDSAVRIT 246
>gi|242371609|ref|ZP_04817183.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
gi|242350676|gb|EES42277.1| peptide chain release factor 1 [Staphylococcus epidermidis
M23864:W1]
Length = 358
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVVATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|315453082|ref|YP_004073352.1| peptide chain release factor 1 [Helicobacter felis ATCC 49179]
gi|315132134|emb|CBY82762.1| peptide chain release factor 1 [Helicobacter felis ATCC 49179]
Length = 349
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS V+VA++P+ D+EV+++ DL++E RA G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAVTVAIMPEVDDVEVNINPNDLRIEVFRAGGHGGQCVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KNR AL LK +YE Q EEQ+
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNRDKALKILKARLYEKQIEEQQQ---------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+ E + ++V +G + + T + +R++DHR
Sbjct: 285 -----------------------ANSESRKMQV----GSGDRSERIRTYNYPQNRLSDHR 317
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y++ E M G +
Sbjct: 318 INLTLYSLEEIMLSGNL 334
>gi|282857117|ref|ZP_06266363.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
gi|282585052|gb|EFB90374.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 110/204 (53%), Gaps = 50/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +V V+P DI++ + +DLK++T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPATEAGGRIHTSAATVVVMPVADDIDIEIRPEDLKIDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q++RSQIKNRA AL LK +Y+ + E+Q RSA +
Sbjct: 244 RITHLPTGLVVTCQDERSQIKNRAKALQVLKTRLYDAEVEKQ-----------RSAES-- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSA-DRITD 177
E K G+G + + T + +R+TD
Sbjct: 291 --------------------------------AERKGMIGSGDRSERIRTYNYPQNRVTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + M G L+E+I
Sbjct: 319 HRIGLTLYKLEYMMDGD--LYEMI 340
>gi|150021273|ref|YP_001306627.1| peptide chain release factor 1 [Thermosipho melanesiensis BI429]
gi|149793794|gb|ABR31242.1| peptide chain release factor 1 [Thermosipho melanesiensis BI429]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 118/218 (54%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++E+ ++ D++++T RA+GAGGQ+VN T+SAV
Sbjct: 178 VQRVPTTESGGRIHTSTATVAVLPEVSNVEIEINPSDIRIDTYRASGAGGQYVNKTESAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ++N+ A+ L+ +Y+++ EEQ A+ I
Sbjct: 238 RITHIPTGIVVTCQSERSQLQNKEQAMNILRARLYKLKLEEQ-------------AKKIS 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+S I TG + + T + +R+TDHR
Sbjct: 285 SNRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 314
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I T YN+ + G L E I+ + + D +I+ +L
Sbjct: 315 INYTSYNLQAVLDG--ELDEFITRLMRIDMLEQIENIL 350
>gi|342216427|ref|ZP_08709074.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587317|gb|EGS30717.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 354
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 81/102 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +V VLP+ +DIEV +DE +++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSTATVVVLPEVEDIEVEIDETEVRVDYFRSSGHGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI V Q+++SQIKN+A A+ LK IY++ EQ
Sbjct: 243 RLTHIPTGIVVSCQDEKSQIKNKAKAMTILKSRIYDLMQSEQ 284
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++E +++V+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VEIDETEVRVDYFRSSGHGGQSVNTTDSAVRLT 245
>gi|315924395|ref|ZP_07920617.1| peptide chain release factor RF1 [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622274|gb|EFV02233.1| peptide chain release factor RF1 [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 364
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ D+EV L+ D++V+ R++G GGQ VNTTDSAV
Sbjct: 192 VQRVPETESGGRIHTSTATVAVLPEADDVEVDLNPNDIRVDVYRSSGNGGQCVNTTDSAV 251
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+G+ V Q+++SQIKN+A A+ LK +Y+++ ++Q++
Sbjct: 252 RLTHIPSGLVVTCQDEKSQIKNKAKAMKVLKARLYDLEMQKQQS---------------- 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
A+ E K ++ TG + + T + RITDHR
Sbjct: 296 ----------------------AISEERK-----SQVGTGDRSERIRTYNFPQGRITDHR 328
Query: 180 IQRTVYNVAEFMSG--GAMLHELIS 202
I +TV+ + F+ G M++ LI+
Sbjct: 329 IGQTVHQLEAFLDGEIDEMINALIT 353
>gi|149195429|ref|ZP_01872512.1| peptide chain release factor 1 [Caminibacter mediatlanticus TB-2]
gi|149134434|gb|EDM22927.1| peptide chain release factor 1 [Caminibacter mediatlanticus TB-2]
Length = 355
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAV+P+ D+++ LD KD+K+E RA GAGGQHVN T+SAV
Sbjct: 181 VQRIPATESQGRIHTSAVTVAVMPEVDDVDIELDPKDIKIEVMRAGGAGGQHVNKTESAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTHIPTGI+V Q++RSQ +N+ AL LK +YE +L +R
Sbjct: 241 RMTHIPTGITVSMQDERSQQRNKEKALQILKARVYE------------KLEKER------ 282
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
LE+ + +++ +G + + T + +RITDHR
Sbjct: 283 -------------------------LEKIGKERKSQVGSGDRSERIRTYNYPQNRITDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + + M+ G + E+I + H YQ
Sbjct: 318 IGLTLYRLEQIMNEG-LFDEIIDPLIAH-YQ 346
>gi|445059136|ref|YP_007384540.1| peptide chain release factor 1 [Staphylococcus warneri SG1]
gi|443425193|gb|AGC90096.1| peptide chain release factor 1 [Staphylococcus warneri SG1]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 114/201 (56%), Gaps = 45/201 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYASQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+ +++ M G L E+I
Sbjct: 320 GLTLQKLSQIMEGN--LDEII 338
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 32/170 (18%)
Query: 20 VAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMT-------HIPTGISVE 72
+ +L PKD DEKD+ VE + A G + D +RM H T I
Sbjct: 95 LKLLLIPKDPN---DEKDVIVEIRAAAGGDEAAIFAGD-LMRMYSKYAEAHHFKTEIVEA 150
Query: 73 SQEDRSQIKNRA------NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESP 126
S+ D K + A +KLK FE +R V+ V + + IH + +
Sbjct: 151 SESDHGGYKEISFSVSGNGAYSKLK-------FENGAHR--VQRVPETESGGRIHTSTAT 201
Query: 127 IIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ E + + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 202 VAVLPEVEDV------EIEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|389799534|ref|ZP_10202514.1| peptide chain release factor 1 [Rhodanobacter sp. 116-2]
gi|388442214|gb|EIL98424.1| peptide chain release factor 1 [Rhodanobacter sp. 116-2]
Length = 359
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 115/211 (54%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I E+ ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSAATVAILPELDEIDEIEINPADLKVDTFRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSART 118
+R+TH+PTG VE QE+RSQ KNRA A++ LK RL+ E Q
Sbjct: 244 IRITHLPTGTVVECQEERSQHKNRARAMSLLKARLLDEAQ-------------------- 283
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITD 177
S A +E+ L+V +G Q + T + RITD
Sbjct: 284 --------------------SKQSAAQAQERRLQV----GSGDRSQRIRTYNYPQGRITD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDI-RQH 207
HRI T+Y + E M G L ELI + R+H
Sbjct: 320 HRINLTLYRLPEIMQGD--LGELIDTLTREH 348
>gi|291393031|ref|XP_002713016.1| PREDICTED: mitochondrial translational release factor 1
[Oryctolagus cuniculus]
Length = 446
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E+ + ++SAR
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQIKNKEIALHVLRARLYQQIIEKDK-------CQQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ G L +LI + Q
Sbjct: 398 DHRISYEVRDIKEFLCGEKCLDQLIQRLLQ 427
>gi|22096040|sp|Q9A9V5.2|RF1_CAUCR RecName: Full=Peptide chain release factor 1; Short=RF-1
Length = 356
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + E DL+++T R++GAGGQHVN TDSAV
Sbjct: 180 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q E + SAR+
Sbjct: 240 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQREALD-----------SARSEA 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 288 RKSQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 315
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+A M G A L ++I+ + D R+ L
Sbjct: 316 INLTLYNLARIMEGDA-LDDVINPLIAEDQAERLASL 351
>gi|367465545|ref|YP_002516272.3| peptide chain release factor 1 [Caulobacter crescentus NA1000]
gi|220963008|gb|ACL94364.1| bacterial peptide chain Release factor 1 (RF-1) [Caulobacter
crescentus NA1000]
Length = 335
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + E DL+++T R++GAGGQHVN TDSAV
Sbjct: 159 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAV 218
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q E + SAR+
Sbjct: 219 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQREALD-----------SARSEA 266
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 267 RKSQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 294
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+A M G A L ++I+ + D R+ L
Sbjct: 295 INLTLYNLARIMEGDA-LDDVINPLIAEDQAERLASL 330
>gi|417644436|ref|ZP_12294426.1| peptide chain release factor 1 [Staphylococcus warneri VCU121]
gi|330684805|gb|EGG96498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU121]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 114/201 (56%), Gaps = 45/201 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++ + ++SA
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYASQ---RKSAVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P S R+TDHRI
Sbjct: 299 DRSE------RIRTYNYPQS---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAMLHELI 201
T+ +++ M G L E+I
Sbjct: 320 GLTLQKLSQIMEGN--LDEII 338
>gi|239637411|ref|ZP_04678393.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
gi|239597011|gb|EEQ79526.1| peptide chain release factor 1 [Staphylococcus warneri L37603]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|343790904|ref|NP_001230509.1| peptide chain release factor 1, mitochondrial [Sus scrofa]
Length = 446
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E+E ++SAR
Sbjct: 321 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKEK------CQQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF+ G L LI + Q
Sbjct: 398 DHRIAYEVRNIKEFLCGEKCLDLLIQRLLQ 427
>gi|342218161|ref|ZP_08710786.1| peptide chain release factor 1 [Megasphaera sp. UPII 135-E]
gi|341590869|gb|EGS34095.1| peptide chain release factor 1 [Megasphaera sp. UPII 135-E]
Length = 360
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 74/91 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ D+E+ LD KD++++ RA+GAGGQHVN T SAV
Sbjct: 186 VQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRIDYFRASGAGGQHVNKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
RMTHIPTGI VE Q++RSQ++NRA AL LK
Sbjct: 246 RMTHIPTGIVVECQDERSQLENRAKALRVLK 276
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++++ RA+GAGGQHVN T SA R+T
Sbjct: 216 IDLDMKDVRIDYFRASGAGGQHVNKTSSAVRMT 248
>gi|363899902|ref|ZP_09326408.1| peptide chain release factor 1 [Oribacterium sp. ACB1]
gi|395210304|ref|ZP_10399224.1| peptide chain release factor 1 [Oribacterium sp. ACB8]
gi|361956756|gb|EHL10068.1| peptide chain release factor 1 [Oribacterium sp. ACB1]
gi|394704594|gb|EJF12132.1| peptide chain release factor 1 [Oribacterium sp. ACB8]
Length = 358
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 110/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D+EV ++ D+K+E R++GAGGQH+N T SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEVEDVEVEINPADVKMEVFRSSGAGGQHINKTSSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E QE+RSQ++NR A+ L+ +YEI+ E+Q+ K +A
Sbjct: 243 RLIHVPTGMVAECQEERSQVQNREKAMRLLRARLYEIELEKQQ---------KENA---- 289
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EEK ++ TG + + T + R+TDHR
Sbjct: 290 --------------------------EEK----RSQLGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I+ T+YN+ + G
Sbjct: 320 IKLTLYNMDAVLGG 333
>gi|88608013|ref|YP_506293.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
gi|119361566|sp|Q2GE03.1|RF1_NEOSM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88600182|gb|ABD45650.1| peptide chain release factor 1 [Neorickettsia sennetsu str.
Miyayama]
Length = 367
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 82/98 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +VAVLP+P+D++V +++KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ KNRA A+ L+ +YEI+
Sbjct: 246 RITHIPTGIVVIQQDEKSQHKNRAKAMKVLRVRLYEIE 283
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +KDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 216 VKINDKDLRIDVYRSSGPGGQSVNTTDSAVRIT 248
>gi|218960517|ref|YP_001740292.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans]
gi|167729174|emb|CAO80085.1| peptide chain release factor RF-1 [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 355
Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 48/207 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE SGR+HTS V+VAVLP+ +DI++ + E DL+++ R+TG GGQ VNTTDSAV
Sbjct: 185 VQRIPVTESSGRIHTSAVTVAVLPEAEDIDIDIQESDLRIDVYRSTGHGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI-YEIQFEEQENRWVVRLVTKRSART 118
R+TH+PTGI V Q+++SQIKN+A AL L+ RL+ EI +EQE + R A+
Sbjct: 245 RITHLPTGIVVTCQDEKSQIKNKAKALKVLRSRLLDEEISRQEQE------IAKARKAQV 298
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDH 178
+ I + P + R+TDH
Sbjct: 299 STGDRSAKIRTYNFPQS--------------------------------------RVTDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIR 205
RI T YN+ F++G + E I +R
Sbjct: 321 RINLTSYNLDSFLAGN--IEEFIQALR 345
>gi|170742857|ref|YP_001771512.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
gi|226739116|sp|B0UAV4.1|RF1_METS4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|168197131|gb|ACA19078.1| peptide chain release factor 1 [Methylobacterium sp. 4-46]
Length = 359
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++H++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 184 VQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNKTESAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIP+GI V QE+RSQ KNRA A+A L+ +YE
Sbjct: 244 RITHIPSGIVVFVQEERSQHKNRARAMAVLRARLYE 279
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H+ E DLK++T RA GAGGQHVN T+SA RIT
Sbjct: 214 IHVNEADLKIDTMRAQGAGGQHVNKTESAIRIT 246
>gi|341614013|ref|ZP_08700882.1| peptide chain release factor 1 [Citromicrobium sp. JLT1363]
Length = 355
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P +++V +D DLK++T RA+GAGGQHVNTTDSA+
Sbjct: 181 VQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDAGDLKIDTYRASGAGGQHVNTTDSAI 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V Q+ RSQ KNR A+ L+ +YE Q
Sbjct: 241 RITHLPTGLVVTCQDGRSQHKNREKAMQVLRARLYEQQ 278
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ DLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 211 VQIDAGDLKIDTYRASGAGGQHVNTTDSAIRIT 243
>gi|330802966|ref|XP_003289482.1| hypothetical protein DICPUDRAFT_92304 [Dictyostelium purpureum]
gi|325080440|gb|EGC33996.1| hypothetical protein DICPUDRAFT_92304 [Dictyostelium purpureum]
Length = 226
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 80/96 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VA+LP+PK++++ + ++D+KV+ R++G GGQ VNTTDSAV
Sbjct: 51 VQRVPDTETQGRIHTSTITVAILPEPKEVDLQIHDRDIKVDVFRSSGNGGQSVNTTDSAV 110
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTH+PTGI V+ Q++RSQ++NRA AL L+ +YE
Sbjct: 111 RMTHLPTGIVVQMQDERSQLQNRAKALKILRARVYE 146
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + ++D+KV+ R++G GGQ VNTTDSA R+T
Sbjct: 81 LQIHDRDIKVDVFRSSGNGGQSVNTTDSAVRMT 113
>gi|302036343|ref|YP_003796665.1| peptide chain release factor RF-1 [Candidatus Nitrospira defluvii]
gi|300604407|emb|CBK40739.1| Peptide chain release factor RF-1 [Candidatus Nitrospira defluvii]
Length = 386
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 115/208 (55%), Gaps = 46/208 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTSTV+VAV+P+ ++EVH+D KDL+++T ++GAGGQ VNTT SAV
Sbjct: 214 VQRVPTTEASGRIHTSTVTVAVMPEVDEVEVHIDPKDLRIDTFCSSGAGGQSVNTTYSAV 273
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ+KNR A+ L+ I E + E+QE + R ++
Sbjct: 274 RITHIPTGVVVSCQDERSQLKNRTKAMRNLRARIVEAEREKQE----AEIAQNRKSQV-- 327
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 328 -------------------------------------GTGDRSEKIRTYNFPQNRVTDHR 350
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I TV+ + + ++G L E++ +R H
Sbjct: 351 IGLTVHKLDQVLAGD--LEEIVQALRAH 376
>gi|212550858|ref|YP_002309175.1| peptide chain release factor 1 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549096|dbj|BAG83764.1| peptide chain release factor 1 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 359
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 110/205 (53%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAV P+ KD+++ + E D++ +T ++G GGQ VNTT SA+
Sbjct: 186 VQRVPITETQGRIHTSAATVAVFPEAKDVDIEIKESDIRTDTFCSSGPGGQSVNTTYSAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V+ Q++RSQ+KN+ A+ +L+ IY I++++Q
Sbjct: 246 RLTHIPTGIVVQCQDERSQLKNKEKAMTELRSRIYNIEYQKQ------------------ 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
++E LK +T +TG + T + R+TDHR
Sbjct: 288 -------------------------IDETALKRKTMVSTGDRSAKIRTYNYPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T YN+ F+ G + E I+ +
Sbjct: 323 INYTTYNLLTFLEGN--IQEFINQL 345
>gi|383481611|ref|YP_005390526.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378933950|gb|AFC72453.1| peptide chain release factor 1 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 361
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIQIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|402771362|ref|YP_006590899.1| peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
gi|401773382|emb|CCJ06248.1| Peptide chain release factor 1 (RF-1) [Methylocystis sp. SC2]
Length = 356
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLPQ +D++V +DEKDL+++T RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPETETQGRIHTSAATVAVLPQAEDVDVDIDEKDLQIDTMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+GI V QE+RSQ +NRA A+ L+ +Y+ +
Sbjct: 243 RITHIPSGIVVMMQEERSQHRNRAKAMNVLRSRLYDAE 280
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 16 STVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD--SAVRMTHIPTGISVES 73
S + +A+LP+ + DEK + +E + TG + D A + G VE
Sbjct: 93 SALKLALLPKDE-----ADEKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVEI 147
Query: 74 QEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREP 133
+ AL K ++ EI R R R T+ I
Sbjct: 148 ------VSGSEGALGGFKEIVAEIIGRGVYGRLKFESGVHRVQRVPETETQGRIHTSAAT 201
Query: 134 CTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + V ++EKDL+++T RA GAGGQHVN T+SA RIT
Sbjct: 202 VAVLPQAEDVDVDIDEKDLQIDTMRAQGAGGQHVNKTESAIRIT 245
>gi|332188246|ref|ZP_08389974.1| peptide chain release factor 1 [Sphingomonas sp. S17]
gi|332011745|gb|EGI53822.1| peptide chain release factor 1 [Sphingomonas sp. S17]
Length = 357
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 114/216 (52%), Gaps = 44/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++ +D+KDL+++ R++GAGGQHVNTTDSA+
Sbjct: 184 VQRVPVTESGGRIHTSAATVAVLPEAEEVDLQIDDKDLRIDIYRSSGAGGQHVNTTDSAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ KNRA A+ L+ +YE E+E R T+RS
Sbjct: 244 RITHIPTGLVVIQQDERSQHKNRAKAMKVLRTRLYEA---ERERLAAERAGTRRSMVGSG 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 301 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 321
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T++ + E + G L ELI + D R+ L
Sbjct: 322 NLTLHRLPEILEG--ELDELIGALLAEDEAERLAAL 355
>gi|327404087|ref|YP_004344925.1| peptide chain release factor 1 (bRF-1) [Fluviicola taffensis DSM
16823]
gi|327319595|gb|AEA44087.1| bacterial peptide chain release factor 1 (bRF-1) [Fluviicola
taffensis DSM 16823]
Length = 359
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 111/194 (57%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAVLP+ ++++ LD D++ +T RA+GAGGQH+N T+SA+
Sbjct: 186 VQRVPETESQGRVHTSAITVAVLPEAEEVDFELDMNDVRKDTFRASGAGGQHINKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG VE Q+ RSQ KN A A++ L+ +Y+ + + R+ +R+A
Sbjct: 246 RLTHIPTGTVVECQDGRSQHKNLAQAISVLRSRLYQAELD--------RVHQERAA---- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
HR +T +TG + T + RITDHR
Sbjct: 294 HR-------------------------------KTLVSTGDRSAKIRTYNYPQGRITDHR 322
Query: 180 IQRTVYNVAEFMSG 193
I +T+YN++ FM+G
Sbjct: 323 INKTIYNLSAFMNG 336
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIR 205
L+ D++ +T RA+GAGGQH+N T+SA R+T H TV + S L + IS +R
Sbjct: 218 LDMNDVRKDTFRASGAGGQHINKTESAIRLT-HIPTGTVVECQDGRSQHKNLAQAISVLR 276
Query: 206 QHDYQFRIDQL 216
YQ +D++
Sbjct: 277 SRLYQAELDRV 287
>gi|73662075|ref|YP_300856.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418575559|ref|ZP_13139709.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|119361617|sp|Q49Z65.1|RF1_STAS1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|72494590|dbj|BAE17911.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379325961|gb|EHY93089.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 358
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTG+ S E +SQI+NR AL LK +++++ +E++ ++ +
Sbjct: 243 RITHIPTGVIATSSE-KSQIQNREKALKVLKARLFDMKLQEEQQKYAAQ 290
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|403253693|ref|ZP_10919994.1| peptide chain release factor 1 [Thermotoga sp. EMP]
gi|402811227|gb|EJX25715.1| peptide chain release factor 1 [Thermotoga sp. EMP]
Length = 342
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ AL L+ +Y++Q E++E R I
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S I TG + + T + +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T Y + E + G L E+IS + +HD + ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVLG 334
>gi|15644115|ref|NP_229164.1| peptide chain release factor 1 [Thermotoga maritima MSB8]
gi|418045420|ref|ZP_12683515.1| peptide chain release factor 1 [Thermotoga maritima MSB8]
gi|7388056|sp|Q9X183.1|RF1_THEMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|52695394|pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1
gi|52695395|pdb|1RQ0|B Chain B, Crystal Structure Of Peptide Releasing Factor 1
gi|52695396|pdb|1RQ0|C Chain C, Crystal Structure Of Peptide Releasing Factor 1
gi|4981923|gb|AAD36433.1|AE001790_5 peptide chain release factor RF-1 [Thermotoga maritima MSB8]
gi|351676305|gb|EHA59458.1| peptide chain release factor 1 [Thermotoga maritima MSB8]
Length = 342
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ AL L+ +Y++Q E++E R I
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S I TG + + T + +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T Y + E + G L E+IS + +HD + ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVLG 334
>gi|227486771|ref|ZP_03917087.1| peptide chain release factor RF1 [Anaerococcus lactolyticus ATCC
51172]
gi|227235241|gb|EEI85256.1| peptide chain release factor RF1 [Anaerococcus lactolyticus ATCC
51172]
Length = 358
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 117/206 (56%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ ++E+H+D D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVDEVELHIDPNDIRTDVYRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ L+ +YE+ EEQ KR+
Sbjct: 243 RLTHIPTGLVVAIQDEKSQIKNKEKAMRVLRARLYEL--EEQ----------KRNKEIAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+R +++ TG + + T + RITDHR
Sbjct: 291 NR-------------------------------KSQVGTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGGA--MLHELISD 203
I +T+Y + +F++G M++ LI++
Sbjct: 320 INKTIYQLDDFLNGDIEDMINSLIAE 345
>gi|157964580|ref|YP_001499404.1| peptide chain release factor 1 [Rickettsia massiliae MTU5]
gi|379713807|ref|YP_005302145.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
gi|166977368|sp|A8F1S1.1|RF1_RICM5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157844356|gb|ABV84857.1| Peptide chain release factor RF-1 [Rickettsia massiliae MTU5]
gi|376334453|gb|AFB31685.1| peptide chain release factor 1 [Rickettsia massiliae str. AZT80]
Length = 361
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIQIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|296282001|ref|ZP_06859999.1| peptide chain release factor 1 [Citromicrobium bathyomarinum JL354]
Length = 355
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P +++V +D DLK++T RA+GAGGQHVNTTDSA+
Sbjct: 181 VQRVPETESGGRIHTSAATVAVLPEPDEVDVQVDPGDLKIDTYRASGAGGQHVNTTDSAI 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V Q+ RSQ KNR A+ L+ +YE Q
Sbjct: 241 RITHLPTGLVVTCQDGRSQHKNREQAMQVLRARLYEQQ 278
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ DLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 211 VQVDPGDLKIDTYRASGAGGQHVNTTDSAIRIT 243
>gi|338741716|ref|YP_004678678.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
gi|337762279|emb|CCB68114.1| peptide chain release factor 1 [Hyphomicrobium sp. MC1]
Length = 384
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/203 (41%), Positives = 114/203 (56%), Gaps = 48/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ ++++V + +D++++T RA GAGGQHVN TDSAV
Sbjct: 210 VQRVPATEASGRIHTSAATVAVLPEAEELDVDIRPEDIRIDTMRAGGAGGQHVNKTDSAV 269
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRS-ARTI 119
RMTHIPTGI V S E +SQ +NR A+A LK IYE++ E R T+RS AR
Sbjct: 270 RMTHIPTGIVVVSAE-KSQHQNRRLAMAVLKSRIYEMERE--------RAATERSDAR-- 318
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+++ +G Q + T + R+TDH
Sbjct: 319 ----------------------------------KSQVGSGDRSQRIRTYNFPQGRVTDH 344
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI T+YN+ E M+G L ELI
Sbjct: 345 RINLTLYNLDEVMTGNG-LDELI 366
>gi|418632436|ref|ZP_13194867.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
gi|374832343|gb|EHR96058.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU128]
Length = 358
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++G+GGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGSGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++G+GGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGSGGQHVNTTDSAVRIT 245
>gi|306820801|ref|ZP_07454426.1| peptide chain release factor RF1 [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|402310221|ref|ZP_10829187.1| peptide chain release factor 1 [Eubacterium sp. AS15]
gi|304551191|gb|EFM39157.1| peptide chain release factor RF1 [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|400368673|gb|EJP21680.1| peptide chain release factor 1 [Eubacterium sp. AS15]
Length = 357
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+EV+LD D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSTVTVAVLPEAEDVEVNLDLNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI + Q+++SQ+KN+ A LK +Y+++ E+++
Sbjct: 243 RLTHIPTGIVISMQDEKSQLKNKDKAFKILKAKLYDMELEKKQ 285
Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V+L+ D++V+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VNLDLNDVRVDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|402703521|ref|ZP_10851500.1| peptide chain release factor 1 [Rickettsia helvetica C9P9]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|229586782|ref|YP_002845283.1| peptide chain release factor 1 [Rickettsia africae ESF-5]
gi|259585242|sp|C3PNN0.1|RF1_RICAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|228021832|gb|ACP53540.1| Peptide chain release factor RF-1 [Rickettsia africae ESF-5]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|15834912|ref|NP_296671.1| peptide chain release factor 1 [Chlamydia muridarum Nigg]
gi|270285082|ref|ZP_06194476.1| peptide chain release factor 1 [Chlamydia muridarum Nigg]
gi|270289105|ref|ZP_06195407.1| peptide chain release factor 1 [Chlamydia muridarum Weiss]
gi|301336478|ref|ZP_07224680.1| peptide chain release factor 1 [Chlamydia muridarum MopnTet14]
gi|13878666|sp|Q9PL16.1|RF1_CHLMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|7190335|gb|AAF39160.1| peptide chain release factor 1 [Chlamydia muridarum Nigg]
Length = 359
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 109/198 (55%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V++AVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTIAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIPTG+ V Q++RSQ KN+A A+ LK I E+Q EQE + RSA
Sbjct: 243 AVRITHIPTGVVVSCQDERSQHKNKAKAMRVLKARIRDAEVQKREQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMQG 335
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPTGIS 70
RL ++ + P P D DL V + G GG VRM H+ I
Sbjct: 90 RLSKQLENLLIPPDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYASIK 141
Query: 71 -------VESQEDRSQIKNRANALA--KLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
S+ D K ++ +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSASESDLGGYKEYIMGVSGTSVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ I EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTIAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|15892685|ref|NP_360399.1| peptide chain release factor 1 [Rickettsia conorii str. Malish 7]
gi|20139335|sp|Q92HK9.1|RF1_RICCN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|15619858|gb|AAL03300.1| peptide chain release factor RF-1 [Rickettsia conorii str. Malish
7]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|374319360|ref|YP_005065859.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|383751342|ref|YP_005426443.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
gi|360041909|gb|AEV92291.1| Peptide chain release factor RF-1 [Rickettsia slovaca 13-B]
gi|379774356|gb|AFD19712.1| peptide chain release factor 1 [Rickettsia slovaca str. D-CWPP]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|67459154|ref|YP_246778.1| peptide chain release factor 1 [Rickettsia felis URRWXCal2]
gi|75536414|sp|Q4ULG0.1|RF1_RICFE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|67004687|gb|AAY61613.1| Peptide chain release factor RF-1 [Rickettsia felis URRWXCal2]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|93279782|pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low
Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With
Rf1
Length = 333
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ AL L+ +Y++Q E++E R I
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S I TG + + T + +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I T Y + E + G L E+IS + +HD + ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVL 333
>gi|34580401|ref|ZP_00141881.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|383484025|ref|YP_005392938.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
gi|28261786|gb|EAA25290.1| peptide chain release factor RF-1 [Rickettsia sibirica 246]
gi|378936379|gb|AFC74879.1| peptide chain release factor 1 [Rickettsia parkeri str. Portsmouth]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|336431245|ref|ZP_08611099.1| peptide chain release factor 1 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336020167|gb|EGN49884.1| peptide chain release factor 1 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 356
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 286
Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7 TEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIP 66
E R+ + +L PKD D+K++ VE + GAGG + V ++
Sbjct: 82 NESKARVEELEQELKILLLPKDPN---DDKNVIVEIR--AGAGGDEAALFAAEVYRMYVH 136
Query: 67 TGISVESQEDRSQ-IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTES 125
ES+ R++ I N + K ++ I + +R R R +
Sbjct: 137 YA---ESRRWRTEMISLNENGIGGFKECVFMITGQGAYSRMKYESGVHRVQRVPETESGG 193
Query: 126 PIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTV 184
I +P + V ++EKD++++ RA+G GGQ VNTTDSA R+T + +
Sbjct: 194 RIHTSTITVAVMPEAEDVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVI 253
Query: 185 YNVAE 189
Y+ E
Sbjct: 254 YSQTE 258
>gi|148270549|ref|YP_001245009.1| peptide chain release factor 1 [Thermotoga petrophila RKU-1]
gi|147736093|gb|ABQ47433.1| bacterial peptide chain release factor 1 (bRF-1) [Thermotoga
petrophila RKU-1]
Length = 342
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q +RSQ +N+ AL L+ +Y++Q E++E R I
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKE-------------REIS 267
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S I TG + + T + +R+TDHR
Sbjct: 268 QKRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 297
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T Y + E + G L E+IS + +HD + ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVLG 334
>gi|363893143|ref|ZP_09320282.1| peptide chain release factor 1 [Eubacteriaceae bacterium CM2]
gi|402838158|ref|ZP_10886670.1| peptide chain release factor 1 [Eubacteriaceae bacterium OBRC8]
gi|361961667|gb|EHL14850.1| peptide chain release factor 1 [Eubacteriaceae bacterium CM2]
gi|402273662|gb|EJU22857.1| peptide chain release factor 1 [Eubacteriaceae bacterium OBRC8]
Length = 357
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 80/100 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +D+EV+LD D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSTVTVAVLPEAEDVEVNLDLNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+THIPTGI + Q+++SQ+KN+ A LK +Y+++ E
Sbjct: 243 RLTHIPTGIVISMQDEKSQLKNKEKAFKILKAKLYDMELE 282
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V+L+ D++V+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VNLDLNDVRVDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|238650227|ref|YP_002916078.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
gi|259585243|sp|C4K0C9.1|RF1_RICPU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238624325|gb|ACR47031.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic]
Length = 355
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|260438934|ref|ZP_05792750.1| peptide chain release factor 1 [Butyrivibrio crossotus DSM 2876]
gi|292808585|gb|EFF67790.1| peptide chain release factor 1 [Butyrivibrio crossotus DSM 2876]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ +++EV +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTASVAVMPEAEEVEVQIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQI+N+ A A L+ +Y+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDME---------------------- 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
C H E D + ++ TG + + T + R+TDHR
Sbjct: 281 --------------------CQKAHDAEADAR-RSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + ++G
Sbjct: 320 IGLTLYKLDKILNG 333
>gi|15604386|ref|NP_220902.1| peptide chain release factor 1 [Rickettsia prowazekii str. Madrid
E]
gi|383487352|ref|YP_005405032.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|383487931|ref|YP_005405610.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|383488777|ref|YP_005406455.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|383489616|ref|YP_005407293.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
gi|383499757|ref|YP_005413118.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500593|ref|YP_005413953.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|386082378|ref|YP_005998955.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|6225942|sp|Q9ZD21.1|RF1_RICPR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|3861078|emb|CAA14978.1| PEPTIDE CHAIN RELEASE FACTOR 1 (prfA) [Rickettsia prowazekii str.
Madrid E]
gi|292572142|gb|ADE30057.1| Peptide chain release factor RF-1 [Rickettsia prowazekii str. Rp22]
gi|380757717|gb|AFE52954.1| peptide chain release factor 1 [Rickettsia prowazekii str. GvV257]
gi|380758290|gb|AFE53526.1| peptide chain release factor 1 [Rickettsia prowazekii str. RpGvF24]
gi|380760810|gb|AFE49332.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Chernikova]
gi|380761656|gb|AFE50177.1| peptide chain release factor 1 [Rickettsia prowazekii str.
Katsinyian]
gi|380762503|gb|AFE51023.1| peptide chain release factor 1 [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763339|gb|AFE51858.1| peptide chain release factor 1 [Rickettsia prowazekii str. Dachau]
Length = 355
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 80/96 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ + I++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPETESQGRIHTSAATVAVLPEAEGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ +YE
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARLYE 278
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 213 IKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|374293217|ref|YP_005040252.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
gi|357425156|emb|CBS88039.1| peptide chain release factor 1 [Azospirillum lipoferum 4B]
Length = 374
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 115/216 (53%), Gaps = 43/216 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 201 VQRVPATEAQGRIHTSAATVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAV 260
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +Y+ E+ + R +++
Sbjct: 261 RITHLPTGLVVSQQDEKSQHKNKAKALKVLRARLYD---RERAEKDAARAADRKNQVGSG 317
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 318 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 338
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+Y + + M+G A L ELI + D R+ +L
Sbjct: 339 NLTLYKIDKVMAGEA-LDELIDALVSEDEAARLAEL 373
>gi|294678208|ref|YP_003578823.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
gi|294477028|gb|ADE86416.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003]
Length = 351
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 53/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ + D++++T R++GAGGQHVNTTDSAV
Sbjct: 179 VQRVPETEAGGRIHTSAATVAVLPEAEEVDIDIPAADIRIDTMRSSGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V S E +SQ +NRANA+A L+ +YEI+ E RL T+R+
Sbjct: 239 RITHLPTGIIVTSSE-KSQHQNRANAMAVLRARLYEIERE--------RLATERA----- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRA-TGAG--GQHVNTTD-SADRIT 176
E +R+ G+G + + T + R+T
Sbjct: 285 ---------------------------------ENRRSQVGSGDRSERIRTYNFPQGRMT 311
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y + + ++G L E+I + HD ++ ++
Sbjct: 312 DHRINLTLYALPQILAGD--LGEVIDALVAHDQAAKLAEM 349
>gi|424845384|ref|ZP_18269995.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
gi|363986822|gb|EHM13652.1| peptide chain release factor 1 [Jonquetella anthropi DSM 22815]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAV+PQ +D+E+ + +DL ++T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTG+ V Q++RSQIKNRA A+ L+ +Y+++ +++++
Sbjct: 244 RITHKPTGLVVTCQDERSQIKNRAKAMMVLRARLYDLELQKKQS 287
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI-KNRA 84
PKD DEKD+ VE + TG + D + VE + RS+I +
Sbjct: 102 PKDPN---DEKDVIVEIRAGTGGDEASLFAADLYRMYSRF-----VEREGWRSEIVEENE 153
Query: 85 NALAKLKRLIYEIQ---------FEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
+ K ++++++ FE +R V+ V A IH + + +
Sbjct: 154 TEVGGYKEIVFQVKGAGAYSKLKFESGVHR--VQRVPATEASGRIHTSAATV-------A 204
Query: 136 TLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+P + + + +DL ++T R++GAGGQHVN TDSA RIT
Sbjct: 205 VMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTDSAVRIT 246
>gi|154502573|ref|ZP_02039633.1| hypothetical protein RUMGNA_00386 [Ruminococcus gnavus ATCC 29149]
gi|153796765|gb|EDN79185.1| peptide chain release factor 1 [Ruminococcus gnavus ATCC 29149]
Length = 356
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 286
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 7 TEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIP 66
E R+ + +L PKD D+K++ VE + GAGG + V ++
Sbjct: 82 NESKARVEELEQELKILLLPKDPN---DDKNVIVEIR--AGAGGDEAALFAAEVYRMYLH 136
Query: 67 TGISVESQEDRSQ-IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTES 125
ES+ R++ I N + K ++ I + +R R R +
Sbjct: 137 YA---ESRRWRTEMISLNENGIGGFKECVFMITGQGAYSRMKYESGVHRVQRVPETESGG 193
Query: 126 PIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTV 184
I +P + V ++EKD++++ RA+G GGQ VNTTDSA R+T + +
Sbjct: 194 RIHTSTITVAVMPEAEDVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVI 253
Query: 185 YNVAE 189
Y+ E
Sbjct: 254 YSQTE 258
>gi|379022896|ref|YP_005299557.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
gi|376323834|gb|AFB21075.1| peptide chain release factor 1 [Rickettsia canadensis str. CA410]
Length = 355
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 116/216 (53%), Gaps = 65/216 (30%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ +D+++ L++KDL+++T R++GAGGQHVNTT+SAV
Sbjct: 183 VQRIPETESHGRIHTSAATVAVLPEVEDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IY E+E R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY-----EEERR--------------- 282
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI----- 175
K E KRA GQ V + D ++RI
Sbjct: 283 -------------------------------KKEQKRANNRRGQ-VGSGDRSERIRTYNF 310
Query: 176 -----TDHRIQRTVYNVAEFMSGGAM---LHELISD 203
+DHRI T+Y + E + G + + LI+D
Sbjct: 311 PQGRVSDHRINLTLYKIDEVVKNGQLDEFVDALIAD 346
>gi|386729808|ref|YP_006196191.1| peptide chain release factor 1 (RF-1) [Staphylococcus aureus subsp.
aureus 71193]
gi|387603397|ref|YP_005734918.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST398]
gi|404479399|ref|YP_006710829.1| peptide chain release factor 1 [Staphylococcus aureus 08BA02176]
gi|418311350|ref|ZP_12922875.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21331]
gi|418979397|ref|ZP_13527193.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus DR10]
gi|283471335|emb|CAQ50546.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST398]
gi|365234481|gb|EHM75413.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21331]
gi|379992828|gb|EIA14278.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus DR10]
gi|384231101|gb|AFH70348.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Staphylococcus
aureus subsp. aureus 71193]
gi|404440888|gb|AFR74081.1| peptide chain release factor 1 [Staphylococcus aureus 08BA02176]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|49484342|ref|YP_041566.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82751719|ref|YP_417460.1| peptide chain release factor 1 [Staphylococcus aureus RF122]
gi|257426257|ref|ZP_05602672.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428915|ref|ZP_05605309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257431524|ref|ZP_05607897.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
68-397]
gi|257434233|ref|ZP_05610583.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
E1410]
gi|257437146|ref|ZP_05613186.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M876]
gi|282904787|ref|ZP_06312661.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C160]
gi|282906462|ref|ZP_06314313.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282909431|ref|ZP_06317246.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911683|ref|ZP_06319482.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914967|ref|ZP_06322747.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M899]
gi|282917467|ref|ZP_06325220.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
D139]
gi|282920296|ref|ZP_06328020.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C427]
gi|282925507|ref|ZP_06333161.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C101]
gi|283771286|ref|ZP_06344175.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
H19]
gi|283958898|ref|ZP_06376343.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293509035|ref|ZP_06667822.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
58-424]
gi|293510950|ref|ZP_06669649.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M809]
gi|293547552|ref|ZP_06672227.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M1015]
gi|295428705|ref|ZP_06821331.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589815|ref|ZP_06948455.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus MN8]
gi|379021794|ref|YP_005298456.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M013]
gi|384548343|ref|YP_005737596.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED133]
gi|384550915|ref|YP_005740167.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus JKD6159]
gi|384866959|ref|YP_005747155.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH60]
gi|387781096|ref|YP_005755894.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
LGA251]
gi|415684944|ref|ZP_11449973.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS00]
gi|416841469|ref|ZP_11904424.1| peptide chain release factor 1 [Staphylococcus aureus O11]
gi|416847178|ref|ZP_11906987.1| peptide chain release factor 1 [Staphylococcus aureus O46]
gi|417887778|ref|ZP_12531898.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21195]
gi|417897471|ref|ZP_12541402.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21235]
gi|417905595|ref|ZP_12549403.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21269]
gi|418562005|ref|ZP_13126474.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21262]
gi|418565053|ref|ZP_13129473.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21264]
gi|418582937|ref|ZP_13147010.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597035|ref|ZP_13160572.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21342]
gi|418602185|ref|ZP_13165597.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21345]
gi|418892633|ref|ZP_13446743.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418898705|ref|ZP_13452772.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418901506|ref|ZP_13455557.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909944|ref|ZP_13463934.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418918165|ref|ZP_13472118.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418923833|ref|ZP_13477744.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418952207|ref|ZP_13504246.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418983065|ref|ZP_13530769.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986688|ref|ZP_13534368.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749405|sp|Q6GEV7.1|RF1_STAAR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361615|sp|Q2YUN5.1|RF1_STAAB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49242471|emb|CAG41187.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|82657250|emb|CAI81691.1| peptide chain release factor 1 [Staphylococcus aureus RF122]
gi|257270962|gb|EEV03135.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274257|gb|EEV05774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257277765|gb|EEV08435.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
68-397]
gi|257280872|gb|EEV11017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
E1410]
gi|257283539|gb|EEV13666.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M876]
gi|282312908|gb|EFB43309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C101]
gi|282316156|gb|EFB46537.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C427]
gi|282318669|gb|EFB49026.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
D139]
gi|282321170|gb|EFB51501.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M899]
gi|282324448|gb|EFB54761.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326701|gb|EFB56999.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330412|gb|EFB59930.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282594820|gb|EFB99797.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
C160]
gi|283459491|gb|EFC06584.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
H19]
gi|283789616|gb|EFC28439.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290919672|gb|EFD96745.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M1015]
gi|291094739|gb|EFE25011.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
58-424]
gi|291466235|gb|EFF08762.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M809]
gi|295127375|gb|EFG57015.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297576943|gb|EFH95657.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus MN8]
gi|298695392|gb|ADI98614.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED133]
gi|302333764|gb|ADL23957.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus JKD6159]
gi|312437464|gb|ADQ76535.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193283|gb|EFU23681.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS00]
gi|323439333|gb|EGA97057.1| peptide chain release factor 1 [Staphylococcus aureus O11]
gi|323442458|gb|EGB00087.1| peptide chain release factor 1 [Staphylococcus aureus O46]
gi|341839569|gb|EGS81149.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21235]
gi|341843058|gb|EGS84290.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21269]
gi|341857126|gb|EGS97949.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21195]
gi|344178198|emb|CCC88684.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
LGA251]
gi|359831103|gb|AEV79081.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
M013]
gi|371974843|gb|EHO92158.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21262]
gi|371975207|gb|EHO92506.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21264]
gi|374395820|gb|EHQ67076.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21342]
gi|374396739|gb|EHQ67965.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21345]
gi|375369571|gb|EHS73445.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-160]
gi|377700742|gb|EHT25076.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377702585|gb|EHT26906.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377702692|gb|EHT27012.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377709171|gb|EHT33442.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377729636|gb|EHT53726.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377732022|gb|EHT56074.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377748433|gb|EHT72390.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377749907|gb|EHT73846.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377758264|gb|EHT82150.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|260655567|ref|ZP_05861055.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
gi|260630015|gb|EEX48209.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1]
Length = 361
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAV+PQ +D+E+ + +DL ++T R++GAGGQHVN TDSAV
Sbjct: 187 VQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTG+ V Q++RSQIKNRA A+ L+ +Y+++ +++++
Sbjct: 247 RITHKPTGLVVTCQDERSQIKNRAKAMMVLRARLYDLELQKKQS 290
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 28/162 (17%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI-KNRA 84
PKD DEKD+ VE + TG + D + VE + RS+I +
Sbjct: 105 PKDPN---DEKDVIVEIRAGTGGDEASLFAADLYRMYSRF-----VEREGWRSEIVEENE 156
Query: 85 NALAKLKRLIYEIQ---------FEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
+ K ++++++ FE +R V+ V A IH + + +
Sbjct: 157 TEVGGYKEIVFQVKGAGAYSKLKFESGVHR--VQRVPATEASGRIHTSAATV-------A 207
Query: 136 TLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+P + + + +DL ++T R++GAGGQHVN TDSA RIT
Sbjct: 208 VMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTDSAVRIT 249
>gi|383482240|ref|YP_005391154.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
gi|378934594|gb|AFC73095.1| peptide chain release factor 1 [Rickettsia montanensis str. OSU
85-930]
Length = 361
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|358053646|ref|ZP_09147382.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
gi|357256833|gb|EHJ07154.1| peptide chain release factor 1 [Staphylococcus simiae CCM 7213]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|15925108|ref|NP_372642.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927692|ref|NP_375225.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
N315]
gi|21283771|ref|NP_646859.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486911|ref|YP_044132.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57652140|ref|YP_186925.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
COL]
gi|87160795|ref|YP_494718.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196022|ref|YP_500835.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|148268569|ref|YP_001247512.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH9]
gi|150394633|ref|YP_001317308.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH1]
gi|151222234|ref|YP_001333056.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156980433|ref|YP_001442692.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161510323|ref|YP_001575982.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141637|ref|ZP_03566130.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253315787|ref|ZP_04839000.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253731044|ref|ZP_04865209.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733048|ref|ZP_04867213.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006906|ref|ZP_05145507.2| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257793876|ref|ZP_05642855.1| peptide chain release factor 1 [Staphylococcus aureus A9781]
gi|258407044|ref|ZP_05680194.1| peptide chain release factor 1 [Staphylococcus aureus A9763]
gi|258422066|ref|ZP_05684983.1| peptide chain release factor 1 [Staphylococcus aureus A9719]
gi|258433565|ref|ZP_05688638.1| peptide chain release factor 1 [Staphylococcus aureus A9299]
gi|258440460|ref|ZP_05690630.1| peptide chain release factor 1 [Staphylococcus aureus A8115]
gi|258445668|ref|ZP_05693846.1| peptide chain release factor 1 [Staphylococcus aureus A6300]
gi|258450122|ref|ZP_05698217.1| peptide chain release factor RF1 [Staphylococcus aureus A6224]
gi|258453423|ref|ZP_05701405.1| peptide chain release factor 1 [Staphylococcus aureus A5937]
gi|262049285|ref|ZP_06022160.1| peptide chain release factor 1 [Staphylococcus aureus D30]
gi|262052620|ref|ZP_06024814.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3]
gi|269203754|ref|YP_003283023.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894762|ref|ZP_06302988.1| peptide chain release factor 1 [Staphylococcus aureus A8117]
gi|282923106|ref|ZP_06330791.1| peptide chain release factor 1 [Staphylococcus aureus A9765]
gi|282929042|ref|ZP_06336627.1| peptide chain release factor 1 [Staphylococcus aureus A10102]
gi|284025152|ref|ZP_06379550.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
132]
gi|294850088|ref|ZP_06790825.1| peptide chain release factor 1 [Staphylococcus aureus A9754]
gi|295407048|ref|ZP_06816850.1| peptide chain release factor 1 [Staphylococcus aureus A8819]
gi|296275403|ref|ZP_06857910.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MR1]
gi|297210061|ref|ZP_06926454.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246047|ref|ZP_06929904.1| peptide chain release factor 1 [Staphylococcus aureus A8796]
gi|300910424|ref|ZP_07127876.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH70]
gi|304379299|ref|ZP_07362038.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379015244|ref|YP_005291480.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VC40]
gi|384862770|ref|YP_005745490.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384865303|ref|YP_005750662.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384870668|ref|YP_005753382.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
T0131]
gi|385782358|ref|YP_005758529.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
11819-97]
gi|386831700|ref|YP_006238354.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387143833|ref|YP_005732227.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TW20]
gi|387151243|ref|YP_005742807.1| Peptide chain release factor 1 [Staphylococcus aureus 04-02981]
gi|415688362|ref|ZP_11452077.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415694101|ref|ZP_11455681.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS03]
gi|417650314|ref|ZP_12300086.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21189]
gi|417651582|ref|ZP_12301342.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21172]
gi|417655362|ref|ZP_12305075.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21193]
gi|417795560|ref|ZP_12442780.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21305]
gi|417799464|ref|ZP_12446604.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21310]
gi|417802281|ref|ZP_12449346.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21318]
gi|417893640|ref|ZP_12537665.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21201]
gi|417898365|ref|ZP_12542286.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21259]
gi|417900254|ref|ZP_12544144.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21266]
gi|418277214|ref|ZP_12891828.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21178]
gi|418286662|ref|ZP_12899303.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21209]
gi|418313995|ref|ZP_12925477.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21334]
gi|418315861|ref|ZP_12927313.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21340]
gi|418319221|ref|ZP_12930605.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21232]
gi|418320033|ref|ZP_12931397.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418428179|ref|ZP_13001168.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431065|ref|ZP_13003966.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418434971|ref|ZP_13006822.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437738|ref|ZP_13009515.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440666|ref|ZP_13012353.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443642|ref|ZP_13015228.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446638|ref|ZP_13018100.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418452564|ref|ZP_13023886.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455519|ref|ZP_13026770.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458395|ref|ZP_13029586.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418568196|ref|ZP_13132547.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21272]
gi|418569955|ref|ZP_13134257.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21283]
gi|418572731|ref|ZP_13136937.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21333]
gi|418580041|ref|ZP_13144131.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599066|ref|ZP_13162562.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21343]
gi|418641146|ref|ZP_13203360.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418645500|ref|ZP_13207622.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-55]
gi|418646515|ref|ZP_13208617.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418649157|ref|ZP_13211187.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418651989|ref|ZP_13213969.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418655916|ref|ZP_13217748.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-105]
gi|418660196|ref|ZP_13221834.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418663232|ref|ZP_13224754.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418871166|ref|ZP_13425553.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418875982|ref|ZP_13430231.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418878975|ref|ZP_13433206.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881813|ref|ZP_13436025.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884444|ref|ZP_13438634.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418887148|ref|ZP_13441291.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418895713|ref|ZP_13449804.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418904457|ref|ZP_13458494.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418907050|ref|ZP_13461071.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418912668|ref|ZP_13466645.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418915249|ref|ZP_13469216.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418920947|ref|ZP_13474875.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418926531|ref|ZP_13480427.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418929461|ref|ZP_13483345.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418932436|ref|ZP_13486264.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418935099|ref|ZP_13488915.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418947910|ref|ZP_13500249.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418955819|ref|ZP_13507755.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418989185|ref|ZP_13536853.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418992035|ref|ZP_13539693.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419773806|ref|ZP_14299793.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419783578|ref|ZP_14309362.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-M]
gi|421150914|ref|ZP_15610565.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|422742974|ref|ZP_16796970.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422745935|ref|ZP_16799870.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424771945|ref|ZP_18199061.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CM05]
gi|424786107|ref|ZP_18212900.1| Peptide chain release factor 1 [Staphylococcus aureus CN79]
gi|440707624|ref|ZP_20888315.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21282]
gi|440735480|ref|ZP_20915085.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|443636447|ref|ZP_21120557.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21236]
gi|443638738|ref|ZP_21122772.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21196]
gi|448742215|ref|ZP_21724167.1| peptide chain release factor 1 [Staphylococcus aureus KT/314250]
gi|448745215|ref|ZP_21727078.1| peptide chain release factor 1 [Staphylococcus aureus KT/Y21]
gi|54039049|sp|P66019.1|RF1_STAAN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54039050|sp|P66020.1|RF1_STAAW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|54041594|sp|P66018.1|RF1_STAAM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56749376|sp|Q6G7J2.1|RF1_STAAS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|71153097|sp|Q5HE82.1|RF1_STAAC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361613|sp|Q2FF10.1|RF1_STAA3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361614|sp|Q2FWE0.1|RF1_STAA8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166223609|sp|A7X4W4.1|RF1_STAA1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|172048990|sp|A6QIW2.1|RF1_STAAE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039994|sp|A6U3K3.1|RF1_STAA2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039995|sp|A5IUR3.1|RF1_STAA9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189039996|sp|A8YY83.1|RF1_STAAT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|13701912|dbj|BAB43204.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
N315]
gi|14247891|dbj|BAB58280.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu50]
gi|21205213|dbj|BAB95907.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MW2]
gi|49245354|emb|CAG43829.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286326|gb|AAW38420.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
COL]
gi|87126769|gb|ABD21283.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203580|gb|ABD31390.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741638|gb|ABQ49936.1| bacterial peptide chain release factor 1 (bRF-1) [Staphylococcus
aureus subsp. aureus JH9]
gi|149947085|gb|ABR53021.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
JH1]
gi|150375034|dbj|BAF68294.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722568|dbj|BAF78985.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160369132|gb|ABX30103.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253725232|gb|EES93961.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728956|gb|EES97685.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257787848|gb|EEV26188.1| peptide chain release factor 1 [Staphylococcus aureus A9781]
gi|257841377|gb|EEV65821.1| peptide chain release factor 1 [Staphylococcus aureus A9763]
gi|257841966|gb|EEV66398.1| peptide chain release factor 1 [Staphylococcus aureus A9719]
gi|257849296|gb|EEV73275.1| peptide chain release factor 1 [Staphylococcus aureus A9299]
gi|257852529|gb|EEV76447.1| peptide chain release factor 1 [Staphylococcus aureus A8115]
gi|257855507|gb|EEV78444.1| peptide chain release factor 1 [Staphylococcus aureus A6300]
gi|257856596|gb|EEV79502.1| peptide chain release factor RF1 [Staphylococcus aureus A6224]
gi|257864404|gb|EEV87150.1| peptide chain release factor 1 [Staphylococcus aureus A5937]
gi|259159490|gb|EEW44540.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3]
gi|259162650|gb|EEW47217.1| peptide chain release factor 1 [Staphylococcus aureus D30]
gi|262076044|gb|ACY12017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ED98]
gi|269941717|emb|CBI50124.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
TW20]
gi|282589348|gb|EFB94440.1| peptide chain release factor 1 [Staphylococcus aureus A10102]
gi|282593297|gb|EFB98294.1| peptide chain release factor 1 [Staphylococcus aureus A9765]
gi|282762850|gb|EFC02984.1| peptide chain release factor 1 [Staphylococcus aureus A8117]
gi|285817782|gb|ADC38269.1| Peptide chain release factor 1 [Staphylococcus aureus 04-02981]
gi|294823036|gb|EFG39468.1| peptide chain release factor 1 [Staphylococcus aureus A9754]
gi|294968073|gb|EFG44100.1| peptide chain release factor 1 [Staphylococcus aureus A8819]
gi|296885261|gb|EFH24201.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177046|gb|EFH36301.1| peptide chain release factor 1 [Staphylococcus aureus A8796]
gi|300888266|gb|EFK83457.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus TCH70]
gi|302751999|gb|ADL66176.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304342158|gb|EFM08058.1| peptide chain release factor RF1 [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312830470|emb|CBX35312.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315128789|gb|EFT84789.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315196948|gb|EFU27290.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140710|gb|EFW32562.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143686|gb|EFW35463.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314803|gb|AEB89216.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
T0131]
gi|329723967|gb|EGG60491.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21189]
gi|329726324|gb|EGG62792.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21172]
gi|329729314|gb|EGG65722.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21193]
gi|334270920|gb|EGL89316.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21305]
gi|334273795|gb|EGL92134.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21310]
gi|334275026|gb|EGL93328.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21318]
gi|341848725|gb|EGS89885.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21259]
gi|341848934|gb|EGS90089.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21266]
gi|341854036|gb|EGS94910.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21201]
gi|364523347|gb|AEW66097.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365165875|gb|EHM57623.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21209]
gi|365173692|gb|EHM64178.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21178]
gi|365228349|gb|EHM69533.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365234609|gb|EHM75539.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21334]
gi|365240958|gb|EHM81715.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21232]
gi|365242449|gb|EHM83156.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21340]
gi|371980464|gb|EHO97672.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21272]
gi|371984075|gb|EHP01202.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21333]
gi|371985160|gb|EHP02245.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21283]
gi|374363941|gb|AEZ38046.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VC40]
gi|374398116|gb|EHQ69306.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21343]
gi|375019909|gb|EHS13459.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375023019|gb|EHS16485.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375023071|gb|EHS16535.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375030416|gb|EHS23733.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375032672|gb|EHS25898.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375032771|gb|EHS25992.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375034494|gb|EHS27655.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375035302|gb|EHS28432.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-105]
gi|375369100|gb|EHS72991.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375370544|gb|EHS74349.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-189]
gi|375374092|gb|EHS77736.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-157]
gi|377692888|gb|EHT17267.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377693011|gb|EHT17388.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377693380|gb|EHT17752.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377711518|gb|EHT35749.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713277|gb|EHT37486.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377715713|gb|EHT39900.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377721175|gb|EHT45316.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377721443|gb|EHT45575.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377723877|gb|EHT47998.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729809|gb|EHT53892.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377736653|gb|EHT60668.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377739893|gb|EHT63893.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377741382|gb|EHT65371.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377754692|gb|EHT78599.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377761506|gb|EHT85377.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377762492|gb|EHT86355.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377768408|gb|EHT92191.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377769201|gb|EHT92977.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|383364875|gb|EID42180.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
IS-M]
gi|383972378|gb|EID88423.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CO-23]
gi|385197092|emb|CCG16737.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|387716328|gb|EIK04387.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716738|gb|EIK04787.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387723794|gb|EIK11510.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725365|gb|EIK12983.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387728625|gb|EIK16109.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387733424|gb|EIK20608.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387734814|gb|EIK21966.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387742410|gb|EIK29228.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387743046|gb|EIK29845.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387744190|gb|EIK30961.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394328998|gb|EJE55125.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|402347532|gb|EJU82559.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CM05]
gi|421955633|gb|EKU07969.1| Peptide chain release factor 1 [Staphylococcus aureus CN79]
gi|436430588|gb|ELP27948.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436505800|gb|ELP41670.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21282]
gi|443407826|gb|ELS66364.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21236]
gi|443408774|gb|ELS67289.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21196]
gi|445547086|gb|ELY15360.1| peptide chain release factor 1 [Staphylococcus aureus KT/314250]
gi|445561486|gb|ELY17688.1| peptide chain release factor 1 [Staphylococcus aureus KT/Y21]
Length = 358
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|258453172|ref|ZP_05701163.1| peptide chain release factor 1 [Staphylococcus aureus A5948]
gi|257859118|gb|EEV81975.1| peptide chain release factor 1 [Staphylococcus aureus A5948]
Length = 358
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|418449724|ref|ZP_13021096.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387735105|gb|EIK22244.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS9]
Length = 358
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKYA 288
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|258422882|ref|ZP_05685782.1| peptide chain release factor 1 [Staphylococcus aureus A9635]
gi|417891518|ref|ZP_12535580.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21200]
gi|418283285|ref|ZP_12896036.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21202]
gi|418308964|ref|ZP_12920544.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21194]
gi|418560739|ref|ZP_13125248.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21252]
gi|418889924|ref|ZP_13444052.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418994816|ref|ZP_13542449.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG290]
gi|257846906|gb|EEV70920.1| peptide chain release factor 1 [Staphylococcus aureus A9635]
gi|341851935|gb|EGS92837.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21200]
gi|365167933|gb|EHM59300.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21202]
gi|365235966|gb|EHM76871.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21194]
gi|371971161|gb|EHO88568.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
21252]
gi|377741749|gb|EHT65735.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377751241|gb|EHT75174.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 358
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|408906413|emb|CCM11874.1| Peptide chain release factor 1 [Helicobacter heilmannii ASB1.4]
Length = 355
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS V+VA++P+ D+EV+++ DL++E RA G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAVTVAIMPEVDDVEVNINPSDLRIEVFRAGGHGGQCVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGISV Q+++SQ KNR AL LK +YE Q EEQ+
Sbjct: 241 RITHVPTGISVSMQDEKSQHKNRDKALKILKARLYEKQIEEQQ 283
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL++E RA G GGQ VNTTDSA RIT
Sbjct: 211 VNINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 243
>gi|328542097|ref|YP_004302206.1| peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
gi|326411847|gb|ADZ68910.1| Peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1]
Length = 357
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 113/197 (57%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLPQ +D+++ + + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSAATVAVLPQAEDVDIDVHDSDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ IY+ + E+ +
Sbjct: 243 RITHLPTGIVVAVQDERSQHKNKAKAMQLLRAKIYDAEREKAAS---------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RTE+ + L+V +G + + T + R+TDHR
Sbjct: 287 ERTEA-----------------------RRLQV----GSGDRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + + +SG A+
Sbjct: 320 IGLTLYKLDQVISGEAL 336
>gi|408424067|emb|CCJ11478.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408426056|emb|CCJ13443.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408428044|emb|CCJ15407.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408430033|emb|CCJ27198.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408432020|emb|CCJ19335.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408434014|emb|CCJ21299.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408436007|emb|CCJ23267.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
gi|408437990|emb|CCJ25233.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
ST228]
Length = 358
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|418425287|ref|ZP_12998381.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387717083|gb|EIK05109.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
VRS1]
Length = 358
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|281208935|gb|EFA83110.1| peptide chain release factor 1 [Polysphondylium pallidum PN500]
Length = 463
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 117/209 (55%), Gaps = 53/209 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VA++P+PK++++ ++++DLK++ R++G GGQ VNTTDSAV
Sbjct: 286 VQRIPDTETQGRIHTSTTTVAIMPEPKEVDIKINDRDLKIDVFRSSGNGGQSVNTTDSAV 345
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+V Q++RSQ++N++ A+ L+ +YE++ VRL T+RSA
Sbjct: 346 RIVHLPTGITVSMQDERSQLQNKSKAMKVLRARLYEME--------RVRLQTERSA---- 393
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG----QHVNTTD-SADRI 175
+R + GG + + T + DR+
Sbjct: 394 -----------------------------------ERNSQIGGATRSERIRTYNFPQDRV 418
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDI 204
TDHR+ T ++ M+ G L + I DI
Sbjct: 419 TDHRVNITTNDIDAIMT-GETLGDFIEDI 446
>gi|157803730|ref|YP_001492279.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
gi|166223597|sp|A8EYR1.1|RF1_RICCK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157784993|gb|ABV73494.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel]
Length = 355
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 116/216 (53%), Gaps = 65/216 (30%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ +D+++ L++KDL+++T R++GAGGQHVNTT+SAV
Sbjct: 183 VQRIPETESHGRIHTSAATVAVLPEVEDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IY E+E R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY-----EEERR--------------- 282
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI----- 175
K E KRA GQ V + D ++RI
Sbjct: 283 -------------------------------KKEQKRANNRRGQ-VGSGDRSERIRTYNF 310
Query: 176 -----TDHRIQRTVYNVAEFMSGGAM---LHELISD 203
+DHRI T+Y + E + G + + LI+D
Sbjct: 311 PQGRVSDHRINLTLYKIDEVVKNGQLDEFVDALIAD 346
>gi|374318699|ref|YP_005065198.1| peptide chain release factor 1 [Mycoplasma haemocanis str.
Illinois]
gi|363989765|gb|AEW45955.1| peptide chain release factor 1 [Mycoplasma haemocanis str.
Illinois]
Length = 364
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 44/201 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ DIE+++D DL+++ RA+GAGGQHVN T+S+V
Sbjct: 187 VQRVPATESKGRVHTSTITVSVMPEQDDIEINIDPSDLRIDVYRASGAGGQHVNKTESSV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+++SQI+NRA A+ L+ ++E + +E++++ + V K+ R
Sbjct: 247 RITHLPTGIVVACQQEKSQIQNRAFAMKMLRSKLWEHE-QEKQSKEIAETVRKQIGR--- 302
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
FR C + +RITDHR+
Sbjct: 303 --------GFR---------CEKIR---------------------TYNYPQNRITDHRV 324
Query: 181 QRTVYNVAEFMSGGAM--LHE 199
T+ + E M GG + +HE
Sbjct: 325 SLTLNKLNEIMMGGDLTEIHE 345
>gi|352086249|ref|ZP_08953790.1| peptide chain release factor 1 [Rhodanobacter sp. 2APBS1]
gi|351679548|gb|EHA62685.1| peptide chain release factor 1 [Rhodanobacter sp. 2APBS1]
Length = 359
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 115/211 (54%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I+ V ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSAATVAILPELDEIDDVEINPADLKVDTFRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSART 118
+R+TH+PTG VE QE+RSQ KNRA A++ LK RL+ E Q
Sbjct: 244 IRITHLPTGTVVECQEERSQHKNRARAMSLLKARLLDEAQ-------------------- 283
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITD 177
S A +E+ L+V +G Q + T + RITD
Sbjct: 284 --------------------SKQSAAQAQERRLQV----GSGDRSQRIRTYNYPQGRITD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDI-RQH 207
HRI T+Y + E M G L ELI + R+H
Sbjct: 320 HRINLTLYRLPEIMQGD--LGELIDTLTREH 348
>gi|294010049|ref|YP_003543509.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
gi|292673379|dbj|BAI94897.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S]
Length = 363
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 114/217 (52%), Gaps = 45/217 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P++++V + + DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+GI V Q++RSQ KN+A A+ L+ IYE + E
Sbjct: 247 RITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEAERE-------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R +S R+ +G + + T + R+TDHR
Sbjct: 287 -RAQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T++ + E + G L E+I + D R+ QL
Sbjct: 324 INLTLHRLPEILEGPG-LSEVIDALVAEDEAARLAQL 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V + + DLK
Sbjct: 174 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPEEV------DVQIADSDLK 225
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 226 IDIYRASGAGGQHVNTTDSAVRIT 249
>gi|85713812|ref|ZP_01044802.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
gi|85699716|gb|EAQ37583.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A]
Length = 358
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 113/202 (55%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPDTEAQGRVHTSAATVAVLPEAEEVDVEIKPDDLRIETMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+++ + R+ RSA
Sbjct: 243 RITHIPTGIVVNMQDSRSQHKNRASAMNILRSRIYDVERQ--------RINAARSA---- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ KD + +G + + T + R+TDHR
Sbjct: 291 --------------------------DRKD-----QVGSGDRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + ++G A LHELI
Sbjct: 320 INLTLYKLPQVIAGDA-LHELI 340
>gi|379796442|ref|YP_005326443.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873435|emb|CCE59774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 358
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|410447428|ref|ZP_11301524.1| peptide chain release factor 1 [SAR86 cluster bacterium SAR86E]
gi|409979703|gb|EKO36461.1| peptide chain release factor 1 [SAR86 cluster bacterium SAR86E]
Length = 362
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 85/105 (80%), Gaps = 1/105 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTSTV+VA+LP+ ++ ++ +D+ +L+V+T RA+GAGGQHVN TDSA
Sbjct: 187 VQRVPETESQGRIHTSTVTVAILPEVDEVQDIEIDKSELRVDTYRASGAGGQHVNKTDSA 246
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
VR+THIPTG+ VE Q+DRSQ KN+A A+A L + + + +EQ+N
Sbjct: 247 VRLTHIPTGVVVECQDDRSQHKNKAKAMALLVAKLKQNEIDEQQN 291
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +++ +L+V+T RA+GAGGQHVN TDSA R+T
Sbjct: 218 IEIDKSELRVDTYRASGAGGQHVNKTDSAVRLT 250
>gi|387906902|ref|YP_006337237.1| peptide chain release factor 1 [Blattabacterium sp. (Blaberus
giganteus)]
gi|387581794|gb|AFJ90572.1| peptide chain release factor 1 [Blattabacterium sp. (Blaberus
giganteus)]
Length = 357
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GRLHTS ++VAVLP+ KD EV ++ D+K +T R++G+GGQHVN T+SAV
Sbjct: 192 VQRIPKTESQGRLHTSAITVAVLPKVKDTEVRINSSDIKKDTFRSSGSGGQHVNKTESAV 251
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+ I+VE QE+RSQ KN A++ L+ IY+ E+E +
Sbjct: 252 RLTHIPSKITVECQEERSQHKNFEKAMSILRSRIYQ---NEKEKK--------------- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
+ +E K L +TG + T + +R+TDHR
Sbjct: 294 --------------------LKKISIERKSL-----ISTGDRSVKIRTYNYPKNRVTDHR 328
Query: 180 IQRTVYNVAEFMSG 193
I +++Y++ FM+G
Sbjct: 329 IHKSIYDLEGFMNG 342
>gi|381158256|ref|ZP_09867489.1| peptide chain release factor 1 [Thiorhodovibrio sp. 970]
gi|380879614|gb|EIC21705.1| peptide chain release factor 1 [Thiorhodovibrio sp. 970]
Length = 359
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 119/219 (54%), Gaps = 47/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+P+ +E + DL+V+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRVHTSACTVAILPEPETVEETAISSGDLRVDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+P+GI VE Q++RSQ KNRA A++ L+ RL+ +
Sbjct: 244 VRITHLPSGIVVECQDERSQHKNRARAMSLLQ----------------ARLLDAAQSAVT 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
R+ES + L+V +G + + T + +R+TDH
Sbjct: 288 AERSES-----------------------RRLQV----GSGDRSERIRTYNFPQNRLTDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
R+ T+Y + E M G L ++I +RQ D R+ L+
Sbjct: 321 RVNLTLYKLDEIMLGS--LDQVIEPLRQEDQADRLTTLM 357
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 34 DEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ-IKNRANALAKLKR 92
D++++ +E + TG + D RM ++ G E Q RS+ I L K
Sbjct: 107 DQRNVYLEVRAGTGGAEAALFAAD-LTRM-YLRYG---EHQGWRSETISASDGELGGYKE 161
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTL----PSSCPAVHLEE 148
++ I ++ R T R R + TES CT P + +
Sbjct: 162 IVLRISGKQVYARLKFEAGTHRVQR--VPETESQGRVHTSACTVAILPEPETVEETAISS 219
Query: 149 KDLKVETKRATGAGGQHVNTTDSADRIT 176
DL+V+T RA+GAGGQHVN TDSA RIT
Sbjct: 220 GDLRVDTYRASGAGGQHVNKTDSAVRIT 247
>gi|310779238|ref|YP_003967571.1| peptide chain release factor 1 (bRF-1) [Ilyobacter polytropus DSM
2926]
gi|309748561|gb|ADO83223.1| bacterial peptide chain release factor 1 (bRF-1) [Ilyobacter
polytropus DSM 2926]
Length = 357
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 45/195 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE SGR+HTST +VAVLP+ D+E V + +LK++T R++GAGGQHVNTTDSA
Sbjct: 183 VQRVPETESSGRIHTSTATVAVLPEVDDVEQVEIKPSELKIDTFRSSGAGGQHVNTTDSA 242
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+P+G+ VE Q++RSQ+KNR A+ L ++E++ E+Q R+
Sbjct: 243 VRITHLPSGVIVECQDERSQLKNREKAMKVLATKLFEMEIEKQ--------------RSE 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
+ T + L+V TG+ + + T + RITDH
Sbjct: 289 VEST-------------------------RKLQV----GTGSRSEKIRTYNYPQGRITDH 319
Query: 179 RIQRTVYNVAEFMSG 193
RI+ T++ + F+ G
Sbjct: 320 RIKLTLHKLDAFLDG 334
>gi|288574777|ref|ZP_06393134.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570518|gb|EFC92075.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 358
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++ +V + ++DLK++T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPATESGGRIHTSAATVAVLPEAEEFDVEVRQEDLKIDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTGI V Q++RSQIKNRA A+A L+ +Y+++
Sbjct: 244 RITHLPTGIVVTCQDERSQIKNRARAMAFLRTKLYDME 281
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + ++DLK++T R++GAGGQHVN TDSA RIT
Sbjct: 214 VEVRQEDLKIDTYRSSGAGGQHVNMTDSAVRIT 246
>gi|217967194|ref|YP_002352700.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
gi|226739103|sp|B8E003.1|RF1_DICTD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217336293|gb|ACK42086.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724]
Length = 367
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 81/104 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ ++IEV +D KDL++ET R+ GAGGQHVN T+S V
Sbjct: 188 VQRVPITESSGRIHTSTATVAVLPEMEEIEVEIDPKDLRIETFRSGGAGGQHVNKTESGV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+THIP+GI V+ Q++RSQ +NR A+ L+ +YE E+EN
Sbjct: 248 RITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKEN 291
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISV 71
+L + L PKD DEK++ +E + G GG+ A + + G +
Sbjct: 92 KLEKVEFELKALLLPKDPN---DEKNIIMEIR--AGTGGEEAALF--AADLFRMYLGYAQ 144
Query: 72 ESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFR 131
+ + + L K +I+ ++ + +R R R I + I
Sbjct: 145 KKGWKVEIVSSNPTGLGGFKEIIFIVEGKGAYSRLKFESGVHRVQRVPITESSGRIHTST 204
Query: 132 EPCTTLPSSCP-AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP V ++ KDL++ET R+ GAGGQHVN T+S RIT
Sbjct: 205 ATVAVLPEMEEIEVEIDPKDLRIETFRSGGAGGQHVNKTESGVRIT 250
>gi|66810982|ref|XP_639198.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
gi|60467811|gb|EAL65826.1| peptide chain release factor 1 [Dictyostelium discoideum AX4]
Length = 430
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VA+LP+PKD+++ + ++DLKV+ R++G GGQ VNTTDSAV
Sbjct: 257 VQRVPLTETQGRIHTSTITVAILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAV 316
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI+V Q++RSQ +NR+ A+ LK IYE
Sbjct: 317 RITHLPTGITVAMQDERSQHQNRSKAMKILKARIYE 352
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + ++DLKV+ R++G GGQ VNTTDSA RIT
Sbjct: 287 IQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRIT 319
>gi|389807572|ref|ZP_10204161.1| peptide chain release factor 1 [Rhodanobacter thiooxydans LCS2]
gi|388443896|gb|EIM00028.1| peptide chain release factor 1 [Rhodanobacter thiooxydans LCS2]
Length = 359
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 115/211 (54%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I+ V ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSAATVAILPELDEIDDVEINPADLKVDTFRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSART 118
+R+TH+PTG VE QE+RSQ KNRA A++ LK RL+ E Q
Sbjct: 244 IRITHLPTGTVVECQEERSQHKNRARAMSLLKARLLDEAQ-------------------- 283
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITD 177
S A +E+ L+V +G Q + T + RITD
Sbjct: 284 --------------------SKQSAAQAQERRLQV----GSGDRSQRIRTYNYPQGRITD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDI-RQH 207
HRI T+Y + E M G L ELI + R+H
Sbjct: 320 HRINLTLYRLPEIMQGD--LGELIDTLTREH 348
>gi|224541463|ref|ZP_03682002.1| hypothetical protein CATMIT_00632 [Catenibacterium mitsuokai DSM
15897]
gi|224525621|gb|EEF94726.1| peptide chain release factor 1 [Catenibacterium mitsuokai DSM
15897]
Length = 358
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 81/105 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +V V+P+ +++++ +D KDL+++T R++GAGGQH+N TDSAV
Sbjct: 185 VQRVPKTETQGRVHTSTATVLVMPEAEEVDIDIDPKDLRIDTYRSSGAGGQHINKTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI SQ+ RSQ NRA A+ L+ +YE + E+E +
Sbjct: 245 RITHIPTGIVATSQDGRSQHDNRAKAMQSLRTRVYEAKLREEEEK 289
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KDL+++T R++GAGGQH+N TDSA RIT
Sbjct: 215 IDIDPKDLRIDTYRSSGAGGQHINKTDSAVRIT 247
>gi|153007050|ref|YP_001381375.1| peptide chain release factor 1 [Anaeromyxobacter sp. Fw109-5]
gi|166223527|sp|A7HI45.1|RF1_ANADF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|152030623|gb|ABS28391.1| peptide chain release factor 1 [Anaeromyxobacter sp. Fw109-5]
Length = 372
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAV+P+ +DI++ + D++++ R+TG+GGQ VNTTDSAV
Sbjct: 187 VQRVPATEAQGRIHTSTVTVAVMPEAEDIDIQVSPADIEMDVFRSTGSGGQSVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V+ Q+++SQ+KNR A+ L+ +YEI+ E Q RSAR
Sbjct: 247 RLTHKPTGIIVKCQQEKSQLKNRNMAMRMLRAKLYEIELERQ-----------RSAR--- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D +++ TG + + T + DR+TDHR
Sbjct: 293 -----------------------------DAARKSQVGTGDRSEKIRTYNFPQDRLTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
I T +N+ M G
Sbjct: 324 INYTRHNLPAVMDG 337
>gi|157363244|ref|YP_001470011.1| peptide chain release factor 1 [Thermotoga lettingae TMO]
gi|157313848|gb|ABV32947.1| peptide chain release factor 1 [Thermotoga lettingae TMO]
Length = 347
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 79/100 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+H+D KDLK++T +A+G GGQ+VN T+SAV
Sbjct: 177 VQRVPVTESSGRIHTSTATVAVLPEVSDVEIHIDPKDLKIDTFKASGHGGQYVNKTESAV 236
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+TH+PTGI V Q +RSQ +NR AL L+ +YEI+ E
Sbjct: 237 RITHLPTGIIVSCQSERSQHQNRERALVILRAKLYEIEQE 276
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S +H++ KDLK++T +A+G GGQ+VN T+SA RIT
Sbjct: 196 VAVLPEVSDVEIHIDPKDLKIDTFKASGHGGQYVNKTESAVRIT 239
>gi|148266072|ref|YP_001232778.1| peptide chain release factor 1 [Geobacter uraniireducens Rf4]
gi|189039974|sp|A5G8T7.1|RF1_GEOUR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146399572|gb|ABQ28205.1| bacterial peptide chain release factor 1 (bRF-1) [Geobacter
uraniireducens Rf4]
Length = 355
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 80/105 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VA++P+ +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAIMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+TH+PTG V QE+RSQIKNRA A+ LK I + +EQ R
Sbjct: 240 RITHLPTGTVVACQEERSQIKNRAKAMKVLKTRILDTIMQEQSAR 284
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + DLK++ R++GAGGQHVNTTDSA RIT
Sbjct: 210 IDINPADLKIDVYRSSGAGGQHVNTTDSAVRIT 242
>gi|402835618|ref|ZP_10884181.1| peptide chain release factor 1 [Mogibacterium sp. CM50]
gi|402273900|gb|EJU23090.1| peptide chain release factor 1 [Mogibacterium sp. CM50]
Length = 354
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 104/196 (53%), Gaps = 48/196 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS S+AV+P+ D+EV+LD D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRVHTSAASIAVMPEVDDVEVNLDPNDVRIDVYRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A LK +Y++ +EQ ++
Sbjct: 243 RLTHIPTGLVVTCQDEKSQIKNKDKAFKVLKARLYDLMQQEQNDK--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ E K G+G + + T + RITD
Sbjct: 288 ------------------------------IAAERKSQIGSGDRSERIRTYNFPQSRITD 317
Query: 178 HRIQRTVYNVAEFMSG 193
HRI T+Y + F+ G
Sbjct: 318 HRINLTLYKLDSFLDG 333
>gi|337285924|ref|YP_004625397.1| peptide chain release factor 1 [Thermodesulfatator indicus DSM
15286]
gi|335358752|gb|AEH44433.1| peptide chain release factor 1 [Thermodesulfatator indicus DSM
15286]
Length = 366
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 82/105 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS V+VAVLP+ ++++V + +DLK++T RA+GAGGQHVN T+SAV
Sbjct: 188 VQRIPETESGGRIHTSAVTVAVLPEAEEVDVEIRPEDLKIDTMRASGAGGQHVNKTESAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI V +RSQ +NRA A+ L+ +YEI+ EQE +
Sbjct: 248 RITHIPTGIVVYCANERSQHQNRAKAMQILRTRLYEIKLREQEEK 292
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +DLK++T RA+GAGGQHVN T+SA RIT
Sbjct: 218 VEIRPEDLKIDTMRASGAGGQHVNKTESAVRIT 250
>gi|222152015|ref|YP_002561175.1| peptide chain release factor 1 [Macrococcus caseolyticus JCSC5402]
gi|254790887|sp|B9E8G1.1|RF1_MACCJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|222121144|dbj|BAH18479.1| peptide chain release factor 1 [Macrococcus caseolyticus JCSC5402]
Length = 358
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ +D+E+ + ++DL++ET R++G+GGQHVNTTDSAV
Sbjct: 183 VQRIPTTESGGRIHTSTATVAVLPEVEDVEIEIRQEDLRIETYRSSGSGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+THIPTGI S E +SQIKNR AL LK +++ + +E++ ++
Sbjct: 243 RITHIPTGIVATSSE-KSQIKNREKALKLLKTRVFDAKLQEEQAKY 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + ++DL++ET R++G+GGQHVNTTDSA RIT
Sbjct: 213 IEIRQEDLRIETYRSSGSGGQHVNTTDSAVRIT 245
>gi|402825861|ref|ZP_10875108.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
gi|402260601|gb|EJU10717.1| peptide chain release factor 1 [Sphingomonas sp. LH128]
Length = 356
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 81/104 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPTEVDVAIEDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+P+GI V Q++RSQ KN+A A+ L+ +YE +E +
Sbjct: 242 RITHLPSGIVVTCQDERSQHKNKAKAMQVLRARLYEKMRDEAQG 285
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 169 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPTEV------DVAIEDKDLK 220
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 221 IDIYRASGAGGQHVNTTDSAVRIT 244
>gi|288819151|ref|YP_003433499.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|384129898|ref|YP_005512511.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|288788551|dbj|BAI70298.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
gi|308752735|gb|ADO46218.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6]
Length = 357
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 54/213 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTST +VAVLP+ + E+ ++ +DLK+ET RA+GAGGQ+VNTT++AV
Sbjct: 185 VQRIPRTESGGRIHTSTATVAVLPEVDETELEINPQDLKIETFRASGAGGQYVNTTETAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRSA 116
R+THIPTGISV Q++RSQ +N+ AL A+LK YE Q EE+
Sbjct: 245 RVTHIPTGISVACQDERSQFQNKQKALKILYARLKDF-YERQKEEE-------------- 289
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
IA +E+ ++V TG + + T + R+
Sbjct: 290 -----------IA-----------------KERKMQV----GTGERSEKIRTYNFPQGRV 317
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
TDHRI T+Y + + + G L E+I + QHD
Sbjct: 318 TDHRINLTLYKLHDVLEG--KLDEIIEALIQHD 348
>gi|89898158|ref|YP_515268.1| peptide chain release factor 1 [Chlamydophila felis Fe/C-56]
gi|119361521|sp|Q255B5.1|RF1_CHLFF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|89331530|dbj|BAE81123.1| peptide chain release factor RF-1 [Chlamydophila felis Fe/C-56]
Length = 361
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 81/212 (38%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFVDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + +
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRR---------------- 286
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
H+ S + + + +G + + T + S +R+TD
Sbjct: 287 --HKEASAMRS-------------------------AQVGSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+YN+ + M G L + S + H Y
Sbjct: 320 HRIGLTLYNLDKVMEGD--LDTITSALVSHAY 349
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEELSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFVDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|220920161|ref|YP_002495462.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
gi|254790889|sp|B8IUB4.1|RF1_METNO RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219944767|gb|ACL55159.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060]
Length = 359
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++H++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 184 VQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNKTESAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE+RSQ KNRA A+A L+ +YE
Sbjct: 244 RITHMPSGIVVFVQEERSQHKNRARAMAVLRARLYE 279
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H+ E DLK++T RA GAGGQHVN T+SA RIT
Sbjct: 214 IHVNEADLKIDTMRAQGAGGQHVNKTESAIRIT 246
>gi|326403021|ref|YP_004283102.1| peptide chain release factor 1 [Acidiphilium multivorum AIU301]
gi|325049882|dbj|BAJ80220.1| peptide chain release factor 1 [Acidiphilium multivorum AIU301]
Length = 352
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATETQGRIHTSTVTVAVLPEAEDVDVEVNEADLRIDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V QE+RSQ KNRA A+ L+ +YE
Sbjct: 239 RITHLPTGIVVAMQEERSQHKNRAKAMKILRARLYE 274
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VEVNEADLRIDVFRASGAGGQHVNKTESAVRIT 241
>gi|347758186|ref|YP_004865748.1| peptide chain release factor 1 [Micavibrio aeruginosavorus ARL-13]
gi|347590704|gb|AEP09746.1| peptide chain release factor 1 [Micavibrio aeruginosavorus ARL-13]
Length = 353
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS +VAV+P+ +D+++H+DEKDL+++ RA GAGGQHVN T+SAV
Sbjct: 180 VQRIPVTEAGGRIHTSAATVAVMPEAEDVDIHIDEKDLRIDVYRAQGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG QE +SQ KNR A+ L+ +YE Q+ +Q
Sbjct: 240 RITHIPTGTVAACQEGKSQHKNRDTAMKMLRSKLYEAQWRKQ------------------ 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE+ +++ +G + + T + R+TDHR
Sbjct: 282 -------------------------AEERSANRKSQVGSGDRSERIRTYNFPQGRVTDHR 316
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + +SG
Sbjct: 317 INMTLYALDDVLSG 330
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA- 143
N L K +I E+Q + +R R R + I +P +
Sbjct: 150 NDLGGYKEIIVEVQGSDVFSRLKYESGGHRVQRIPVTEAGGRIHTSAATVAVMPEAEDVD 209
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++EKDL+++ RA GAGGQHVN T+SA RIT
Sbjct: 210 IHIDEKDLRIDVYRAQGAGGQHVNKTESAVRIT 242
>gi|385860353|ref|YP_005906863.1| peptide chain release factor 1 [Mycoplasma haemofelis Ohio2]
gi|334194054|gb|AEG73782.1| peptide chain release factor 1 [Mycoplasma haemofelis Ohio2]
Length = 364
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 44/201 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ DIE+++D DL+++ RA+GAGGQHVN T+S+V
Sbjct: 187 VQRVPATESKGRVHTSTITVSVMPEQDDIEINIDPSDLRIDVYRASGAGGQHVNKTESSV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+++SQI+NRA A+ L+ ++E + +E++++ + V K+ R
Sbjct: 247 RITHLPTGIVVACQQEKSQIQNRAFAMKMLRSKLWEHE-QEKQSKEIAETVRKQIGR--- 302
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
FR C + +RITDHR+
Sbjct: 303 --------GFR---------CEKIR---------------------TYNYPQNRITDHRV 324
Query: 181 QRTVYNVAEFMSGGAM--LHE 199
T+ + E M GG + +HE
Sbjct: 325 SLTLNKLNEIMIGGDLTEIHE 345
>gi|148260023|ref|YP_001234150.1| peptide chain release factor 1 [Acidiphilium cryptum JF-5]
gi|166223523|sp|A5FX99.1|RF1_ACICJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|146401704|gb|ABQ30231.1| bacterial peptide chain release factor 1 (bRF-1) [Acidiphilium
cryptum JF-5]
Length = 352
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATETQGRIHTSTVTVAVLPEAEDVDVEVNEADLRIDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V QE+RSQ KNRA A+ L+ +YE
Sbjct: 239 RITHLPTGIVVAMQEERSQHKNRAKAMKILRARLYE 274
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VEVNEADLRIDVFRASGAGGQHVNKTESAVRIT 241
>gi|322421625|ref|YP_004200848.1| peptide chain release factor 1 [Geobacter sp. M18]
gi|320128012|gb|ADW15572.1| peptide chain release factor 1 [Geobacter sp. M18]
Length = 359
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAV+P+ +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V QE+RSQIKNRA A+ LK I + EQ +
Sbjct: 244 RITHIPTGTVVACQEERSQIKNRAKAMKVLKSRILDNILMEQNAK--------------- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K G+G + + T + R+TD
Sbjct: 289 ------------------------------LAADRKSQVGSGDRSERIRTYNFPQGRMTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E+ +R H YQ
Sbjct: 319 HRIGLTLYRLDAIMAGD--IGEIADSLRAH-YQM 349
>gi|225849764|ref|YP_002729998.1| peptide chain release factor 1 [Persephonella marina EX-H1]
gi|254790894|sp|C0QTI3.1|RF1_PERMH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|225646004|gb|ACO04190.1| peptide chain release factor 1 [Persephonella marina EX-H1]
Length = 361
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 78/91 (85%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +++++ + ++LK+ET RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEELKIETMRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+THIPTGI V Q++RSQ++NRA A+ L+
Sbjct: 247 RITHIPTGIVVSCQDERSQLQNRAKAMQILR 277
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ ++LK+ET RA+GAGGQHVNTTDSA RIT
Sbjct: 217 IEIKPEELKIETMRASGAGGQHVNTTDSAVRIT 249
>gi|288956982|ref|YP_003447323.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
gi|288909290|dbj|BAI70779.1| peptide chain release factor RF-1 [Azospirillum sp. B510]
Length = 361
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 43/216 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 188 VQRVPATEAQGRIHTSAATVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSVNTTDSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +Y+ E+ + R +++
Sbjct: 248 RITHLPTGLVVSQQDEKSQHKNKAKALKVLRARLYD---RERAEKDAARAADRKNQVGSG 304
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 305 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 325
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+Y + + M+G A L EL+ + D R+ +L
Sbjct: 326 NLTLYKIDKVMAGEA-LDELVDALVAEDEAARLAEL 360
>gi|220927713|ref|YP_002504622.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
gi|254790874|sp|B8I562.1|RF1_CLOCE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219998041|gb|ACL74642.1| peptide chain release factor 1 [Clostridium cellulolyticum H10]
Length = 359
Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST++VAVLP+ ++++V ++ DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI V Q++RSQ KN+ A+ L+ +YEI E+Q N
Sbjct: 243 RITHMPTGIVVSCQDERSQHKNKDKAMKILRSKLYEIAQEQQIN 286
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 213 VDINPSDLRIDTYRASGAGGQHINKTDSAIRIT 245
>gi|321310997|ref|YP_004193326.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford
1]
gi|319802841|emb|CBY93487.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford
1]
Length = 364
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 113/201 (56%), Gaps = 44/201 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ DIE+++D DL+++ RA+GAGGQHVN T+S+V
Sbjct: 187 VQRVPATESKGRVHTSTITVSVMPEQDDIEINIDPSDLRIDVYRASGAGGQHVNKTESSV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+++SQI+NRA A+ L+ ++E + +E++++ + V K+ R
Sbjct: 247 RITHLPTGIVVACQQEKSQIQNRAFAMKMLRSKLWEHE-QEKQSKEIAETVRKQIGR--- 302
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
FR C + +RITDHR+
Sbjct: 303 --------GFR---------CEKIR---------------------TYNYPQNRITDHRV 324
Query: 181 QRTVYNVAEFMSGGAM--LHE 199
T+ + E M GG + +HE
Sbjct: 325 SLTLNKLNEIMIGGDLTEIHE 345
>gi|392970038|ref|ZP_10335447.1| peptide chain release factor 1 [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046013|ref|ZP_10901488.1| peptide chain release factor 1 [Staphylococcus sp. OJ82]
gi|392511966|emb|CCI58654.1| peptide chain release factor 1 [Staphylococcus equorum subsp.
equorum Mu2]
gi|402764175|gb|EJX18262.1| peptide chain release factor 1 [Staphylococcus sp. OJ82]
Length = 358
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +D+KV+T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDIKVDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+TH+PTGI S E +SQI+NR A+ LK +++++ +E++ ++ +
Sbjct: 243 RITHVPTGIIATSSE-KSQIQNREKAMKVLKARLFDMKLQEEQQKYAAQ 290
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +D+KV+T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDIKVDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|426375274|ref|XP_004054469.1| PREDICTED: peptide chain release factor 1, mitochondrial [Gorilla
gorilla gorilla]
Length = 445
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA G GGQHVN TD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGPGGQHVNKTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R ++SAR
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR------QQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 397 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 426
>gi|51473710|ref|YP_067467.1| peptide chain release factor 1 [Rickettsia typhi str. Wilmington]
gi|383752487|ref|YP_005427587.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|383843322|ref|YP_005423825.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
gi|61214605|sp|Q68WK7.1|RF1_RICTY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51460022|gb|AAU03985.1| peptide chain release factor 1 (RF-1) [Rickettsia typhi str.
Wilmington]
gi|380759130|gb|AFE54365.1| peptide chain release factor 1 [Rickettsia typhi str. TH1527]
gi|380759969|gb|AFE55203.1| peptide chain release factor 1 [Rickettsia typhi str. B9991CWPP]
Length = 355
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 87/114 (76%), Gaps = 6/114 (5%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ + +++ +++KDL+++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEGVDIKIEDKDLRIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN------RWVV 108
R+THIPTGI+V Q+++SQ KN+A AL L+ +YE + ++E RW V
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARLYEEKRRQKEQERSDSRRWQV 296
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IKIEDKDLRIDTYRSSGAGGQHVNTTDSAVRIT 245
>gi|335041999|ref|ZP_08535026.1| protein chain release factor A [Methylophaga aminisulfidivorans MP]
gi|333788613|gb|EGL54495.1| protein chain release factor A [Methylophaga aminisulfidivorans MP]
Length = 362
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/103 (62%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I EV ++ DLKV+T R+ GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAILPEADEIDEVDINPADLKVDTYRSQGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+THIPTGI VE QE+RSQ KNRA A++ L+ I Q E+Q
Sbjct: 246 VRITHIPTGIVVECQEERSQHKNRAKAMSVLQARIMAAQVEKQ 288
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 134 CTT--LPSS--CPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
CT LP + V + DLKV+T R+ GAGGQHVNTTDSA RIT
Sbjct: 203 CTVAILPEADEIDEVDINPADLKVDTYRSQGAGGQHVNTTDSAVRIT 249
>gi|417401091|gb|JAA47444.1| Putative mitochondrial polypeptide chain release factor [Desmodus
rotundus]
Length = 446
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 116/210 (55%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV +LPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E+E + ++SAR
Sbjct: 320 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKEK------LQQQSAR 372
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 373 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ +F+ G L +LI + Q
Sbjct: 397 DHRIAYEVRDIKKFLCGEKYLDQLIERLLQ 426
>gi|383312620|ref|YP_005365421.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
gi|378931280|gb|AFC69789.1| peptide chain release factor 1 [Candidatus Rickettsia amblyommii
str. GAT-30V]
Length = 355
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ + +KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIADKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIADKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|160947003|ref|ZP_02094206.1| hypothetical protein PEPMIC_00965 [Parvimonas micra ATCC 33270]
gi|158447387|gb|EDP24382.1| peptide chain release factor 1 [Parvimonas micra ATCC 33270]
Length = 365
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 50/207 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +D++V +++ DL+++ RA+G GGQ VNTTDSAV
Sbjct: 192 VQRVPATESSGRIHTSAATVAVLPEVEDVDVVINQNDLRIDVYRASGNGGQCVNTTDSAV 251
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ+KN+ A+ LK +YE +++E++N
Sbjct: 252 RITHIPTGVVVTCQDEKSQLKNKEKAMKILKSRLYE-KYQEEQN---------------- 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
KD+ K G+G + + T + R+TD
Sbjct: 295 ----------------------------KDIADARKSQIGSGDRSERIRTYNFPQGRVTD 326
Query: 178 HRIQRTVYNVAEFMSG--GAMLHELIS 202
HRI T+Y + F++G M+ LI+
Sbjct: 327 HRINMTIYQLDSFLNGDISEMIDALIT 353
>gi|373493931|ref|ZP_09584537.1| peptide chain release factor 1 [Eubacterium infirmum F0142]
gi|371969065|gb|EHO86516.1| peptide chain release factor 1 [Eubacterium infirmum F0142]
Length = 354
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 82/104 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +D++V LD D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSAATVAVLPEVEDVDVALDPNDVRVDVYRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTG+ V Q+++SQIKN+ A LK +Y+++ +EQ++
Sbjct: 243 RLTHVPTGLVVTCQDEKSQIKNKEKAFKVLKSRLYDLKLQEQQS 286
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L+ D++V+ RA+G GGQ VNTTDSA R+T
Sbjct: 213 VALDPNDVRVDVYRASGNGGQCVNTTDSAVRLT 245
>gi|295688344|ref|YP_003592037.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
gi|295430247|gb|ADG09419.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756]
Length = 356
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 118/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + E DL+++T R++GAGGQHVN TDSAV
Sbjct: 180 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIDIKESDLRIDTYRSSGAGGQHVNKTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q E + SAR+
Sbjct: 240 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQREALD-----------SARSEA 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 288 RKSQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 315
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN++ M G A L ++I+ + D R+ L
Sbjct: 316 INLTLYNLSRIMEGDA-LDDVINPLIAEDQAERLASL 351
>gi|374307514|ref|YP_005053945.1| peptide chain release factor 1 [Filifactor alocis ATCC 35896]
gi|291166475|gb|EFE28521.1| peptide chain release factor 1 [Filifactor alocis ATCC 35896]
Length = 354
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 106/196 (54%), Gaps = 48/196 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ D+EV LD D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSTSTVAVLPEVDDVEVELDMNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + Q+++SQ+KN+ A LK +Y+++ E+
Sbjct: 243 RLTHKPTGIVISMQDEKSQLKNKEKAFKILKAKLYDLELEKA------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSAD-RITD 177
+K+L E K G+G + + T + R+TD
Sbjct: 285 ---------------------------QKELAQERKSQVGSGDRSERIRTYNYPQGRVTD 317
Query: 178 HRIQRTVYNVAEFMSG 193
HRI T+Y + F++G
Sbjct: 318 HRIGLTLYKLENFLNG 333
>gi|217077770|ref|YP_002335488.1| peptide chain release factor 1 [Thermosipho africanus TCF52B]
gi|419760369|ref|ZP_14286648.1| peptide chain release factor 1 [Thermosipho africanus H17ap60334]
gi|217037625|gb|ACJ76147.1| peptide chain release factor 1 [Thermosipho africanus TCF52B]
gi|407514472|gb|EKF49287.1| peptide chain release factor 1 [Thermosipho africanus H17ap60334]
Length = 358
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++E+ ++ D++++T RA+GAGGQ+VN T+SAV
Sbjct: 178 VQRVPTTESGGRIHTSTATVAVLPEVSNVEIEINPSDIRIDTYRASGAGGQYVNKTESAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ++N+ A+ L+ +++++ EEQE R I
Sbjct: 238 RITHIPTGIVVTCQSERSQLQNKEQAMNILRARLFKLKLEEQE-------------RKIS 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+S I TG + + T + +R+TDHR
Sbjct: 285 SNRKSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 314
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I T YN+ + G L E I+ + + D +++ +L
Sbjct: 315 INYTSYNLQAVLDG--ELDEFITRLMRIDMLEQLENIL 350
>gi|402313584|ref|ZP_10832498.1| peptide chain release factor 1 [Lachnospiraceae bacterium ICM7]
gi|400366071|gb|EJP19110.1| peptide chain release factor 1 [Lachnospiraceae bacterium ICM7]
Length = 356
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++V +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +YEI+ E+ K+SA
Sbjct: 242 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRSKLYEIELEK-----------KQSAEAAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + R+TDHR
Sbjct: 291 RRSQI--------------------------------GTGDRSEKIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + M+G + ELI
Sbjct: 319 INLTLYKLDKIMNGD--IQELI 338
>gi|376259649|ref|YP_005146369.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
gi|373943643|gb|AEY64564.1| peptide chain release factor 1 [Clostridium sp. BNL1100]
Length = 359
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST++VAVLP+ ++++V ++ DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI V Q++RSQ KN+ A+ L+ +YEI E+Q N
Sbjct: 243 RITHMPTGIVVSCQDERSQHKNKDRAMKILRSKLYEIAQEQQIN 286
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 213 VDINPSDLRIDTYRASGAGGQHINKTDSAIRIT 245
>gi|404482602|ref|ZP_11017828.1| peptide chain release factor 1 [Clostridiales bacterium OBRC5-5]
gi|404344267|gb|EJZ70625.1| peptide chain release factor 1 [Clostridiales bacterium OBRC5-5]
Length = 356
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++V +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +YEI+ E+ K+SA
Sbjct: 242 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRSKLYEIELEK-----------KQSAEAAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + R+TDHR
Sbjct: 291 RRSQI--------------------------------GTGDRSEKIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + M+G + ELI
Sbjct: 319 INLTLYKLDKIMNGD--IQELI 338
>gi|115375817|ref|ZP_01463069.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1]
gi|310822927|ref|YP_003955285.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1]
gi|115367205|gb|EAU66188.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1]
gi|309395999|gb|ADO73458.1| Peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1]
Length = 366
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 120/211 (56%), Gaps = 47/211 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ +D++V ++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 182 VQRVPATETQGRIHTSTITVSVMPEAEDVDVQINPADIEMQVMRSTGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H P+GI V+ Q+++SQ KNRA A+ L+ +YEI EQE R+ RS R +
Sbjct: 242 RLIHKPSGIVVKCQQEKSQTKNRAQAMRMLRAKLYEI---EQE-----RI---RSERDSM 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R + TG + + T + DR+TDHR
Sbjct: 291 RRGQV--------------------------------GTGDRSEKIRTYNFPQDRLTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I TV+N+ M+GG + ++I+ R H YQ
Sbjct: 319 ISLTVHNLPGIMAGG--IDDVITACRTH-YQ 346
>gi|308805082|ref|XP_003079853.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
gi|116058310|emb|CAL53499.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri]
Length = 1134
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAVLP ++++ + ++D+++ET RA+GAGGQHVNTT+SAV
Sbjct: 724 VQRVPETETQGRVHTSTASVAVLPHAAEVDMDIRDEDVRIETMRASGAGGQHVNTTNSAV 783
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI+V Q++RSQ KN+A A + LK +Y+++ E+ N
Sbjct: 784 RLTHLPTGITVAIQDERSQHKNKAKAFSVLKSRLYDMEREKLAN 827
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + ++D+++ET RA+GAGGQHVNTT+SA R+T
Sbjct: 754 MDIRDEDVRIETMRASGAGGQHVNTTNSAVRLT 786
>gi|402820806|ref|ZP_10870370.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
gi|402510452|gb|EJW20717.1| hypothetical protein IMCC14465_16040 [alpha proteobacterium
IMCC14465]
Length = 355
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 88/116 (75%), Gaps = 8/116 (6%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+P++++V ++EKDL+V+ RA+G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESSGRIHTSAATVAVLPEPEEVDVQIEEKDLRVDVFRASGPGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSA 116
R+TH+PTGI V Q+++SQ KNRA A+ L+ ++E + + RL ++RSA
Sbjct: 241 RITHLPTGIVVSQQDEKSQHKNRAKAMQVLRARLFEAERD--------RLDSERSA 288
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 112 TKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS 171
T+ S R IH + + + EP V +EEKDL+V+ RA+G GGQ VNTTDS
Sbjct: 187 TESSGR--IHTSAATVAVLPEPEEV------DVQIEEKDLRVDVFRASGPGGQSVNTTDS 238
Query: 172 ADRIT 176
A RIT
Sbjct: 239 AVRIT 243
>gi|159474546|ref|XP_001695386.1| hypothetical protein CHLREDRAFT_49544 [Chlamydomonas reinhardtii]
gi|158275869|gb|EDP01644.1| hypothetical protein CHLREDRAFT_49544 [Chlamydomonas reinhardtii]
Length = 336
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 108/203 (53%), Gaps = 44/203 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GRLHTST +V VLPQ +++V L E+DL+VET RA+GAGGQHVN TDSAV
Sbjct: 163 VQRVPVTEAGGRLHTSTAAVVVLPQADEVDVRLREEDLRVETMRASGAGGQHVNVTDSAV 222
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q +RSQ NRA AL L+ +Y+++ +R AR
Sbjct: 223 RITHLPTGLVVSCQNERSQHLNRAAALKVLRSRLYDLE-------------AQRRARQAG 269
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ + + A+G + V T + R+TDHR
Sbjct: 270 EQRSALV------------------------------ASGDRSERVRTYNFPQGRVTDHR 299
Query: 180 IQRTVYNVAEFMSGGAMLHELIS 202
I TV+++ + G L L++
Sbjct: 300 IHLTVHDLGSVLEAGEGLQRLMA 322
>gi|307942489|ref|ZP_07657838.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
gi|307774310|gb|EFO33522.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4]
Length = 359
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLPQ +D+++ ++E DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPATESGGRIHTSAATVAVLPQAEDVDIEINESDLRIDTFRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH PTGI V Q++RSQ KN+A A+ L+ IY+
Sbjct: 243 RITHEPTGIVVAVQDERSQHKNKARAMQLLRARIYD 278
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + E DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 213 IEINESDLRIDTFRASGAGGQHVNTTDSAVRIT 245
>gi|222053788|ref|YP_002536150.1| peptide chain release factor 1 [Geobacter daltonii FRC-32]
gi|221563077|gb|ACM19049.1| peptide chain release factor 1 [Geobacter daltonii FRC-32]
Length = 356
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 113/214 (52%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VA++P+ +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 181 VQRVPETEAQGRIHTSACTVAIMPEAEDVDIDINPTDLKIDVYRSSGAGGQHVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG V QE+RSQIKNRA A+ LK I + +EQ +
Sbjct: 241 RITHLPTGTVVACQEERSQIKNRAKAMKVLKTRILDNILQEQNAK--------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K+ G+G + + T + R+TD
Sbjct: 286 ------------------------------LAADRKQQVGSGDRSERIRTYNFPQGRMTD 315
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E+ +R H YQ
Sbjct: 316 HRIGLTLYRLDAIMAGD--IAEIADALRAH-YQM 346
>gi|253702392|ref|YP_003023581.1| peptide chain release factor 1 [Geobacter sp. M21]
gi|251777242|gb|ACT19823.1| peptide chain release factor 1 [Geobacter sp. M21]
Length = 359
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAV+P+ +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG V QE+RSQIKNRA A+ LK I + EQ +
Sbjct: 244 RITHLPTGTVVACQEERSQIKNRAKAMKVLKSRILDNILMEQNAK--------------- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K G+G + + T + R+TD
Sbjct: 289 ------------------------------LAADRKSQVGSGDRSERIRTYNFPQGRMTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E+ +R H YQ
Sbjct: 319 HRIGLTLYRLDAIMAGD--IAEIADSLRAH-YQM 349
>gi|426236273|ref|XP_004012095.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 1
[Ovis aries]
gi|426236275|ref|XP_004012096.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 2
[Ovis aries]
Length = 446
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 111/205 (54%), Gaps = 47/205 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLP P +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQ+KN+ AL L+ +Y+ E+ + +RSAR
Sbjct: 321 SAVRLVHMPTGLVVECQQERSQMKNKEIALRVLRARLYQQIIEKDK-------CQQRSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELI 201
DHRI V N+ EF+ G L +LI
Sbjct: 398 DHRIAYEVRNIKEFLCGEKCLDQLI 422
>gi|334139999|ref|YP_004533199.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
gi|333938023|emb|CCA91381.1| peptide chain release factor RF-1 [Novosphingobium sp. PP1Y]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+G+ V Q++RSQ KN+A A+ L+ +YE
Sbjct: 242 RITHLPSGLVVICQDERSQHKNKAKAMQVLRARLYE 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 169 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPSEV------DVQIEDKDLK 220
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 221 IDIYRASGAGGQHVNTTDSAVRIT 244
>gi|331002270|ref|ZP_08325789.1| peptide chain release factor 1 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|330411364|gb|EGG90780.1| peptide chain release factor 1 [Lachnospiraceae oral taxon 107 str.
F0167]
Length = 355
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++V +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +YEI+ E+ K+SA
Sbjct: 242 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRSKLYEIELEK-----------KQSAEAAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + R+TDHR
Sbjct: 291 RRSQI--------------------------------GTGDRSEKIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + M+G + ELI
Sbjct: 319 INLTLYKLDKIMNGD--IQELI 338
>gi|26553517|ref|NP_757451.1| peptide chain release factor 1 [Mycoplasma penetrans HF-2]
gi|32171558|sp|Q8EWY5.1|RF1_MYCPE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|26453523|dbj|BAC43855.1| peptide chain release factor 1 [Mycoplasma penetrans HF-2]
Length = 359
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 115/209 (55%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAVLP+ +++E+ ++ DLK++T RA+GAGGQH+N T+SAV
Sbjct: 186 VQRVPATESKGRVHTSTITVAVLPELEEVELVINNSDLKIDTYRASGAGGQHINKTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V QE +SQI+NR A+ L+ ++E + E+ENR +
Sbjct: 246 RITHIPTGIFVACQEGKSQIENRETAMKMLRAKLWEKK--EEENRKNI------------ 291
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
DL+ + + TG + + T + +R+TDHR
Sbjct: 292 ----------------------------SDLR-KGQVGTGERAEKIRTYNYPQNRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+ + M G L E+I + HD
Sbjct: 323 INLTLNKLDNVMLGN--LSEIIDSLISHD 349
>gi|354595368|ref|ZP_09013401.1| peptide chain release factor 1 [Commensalibacter intestini A911]
gi|353671278|gb|EHD12984.1| peptide chain release factor 1 [Commensalibacter intestini A911]
Length = 360
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +DEKDL+++ RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVDIDEKDLRIDVYRASGAGGQHVNKTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+P+G+ V QE++SQ KN+A A+ L+ +YE Q
Sbjct: 246 RITHMPSGVVVAMQEEKSQHKNKAKAMKILRARLYEQQ 283
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++EKDL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 216 VDIDEKDLRIDVYRASGAGGQHVNKTESAVRIT 248
>gi|395226708|ref|ZP_10405156.1| peptide chain release factor 1 [Thiovulum sp. ES]
gi|394445034|gb|EJF06030.1| peptide chain release factor 1 [Thiovulum sp. ES]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 104/201 (51%), Gaps = 52/201 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VA++P+ D+E+ ++ DLK++ RA+G GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAIMPEVDDVEIEINSNDLKIDVMRASGNGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQF-----EEQENRWVVRLVTKRS 115
R+TH+PTGI + +Q+++SQ KN+ A+ LK ++EI+ E+ENR RS
Sbjct: 241 RITHLPTGIVITNQDEKSQHKNKDKAMKVLKARLFEIEMREKMASEKENRLAQVGSGDRS 300
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R I + P +RI
Sbjct: 301 ER---------IRTYNYP--------------------------------------QNRI 313
Query: 176 TDHRIQRTVYNVAEFMSGGAM 196
TDHRI T+Y + E M GG M
Sbjct: 314 TDHRIGLTLYRLDEIMQGGVM 334
>gi|329113396|ref|ZP_08242177.1| Peptide chain release factor 1 [Acetobacter pomorum DM001]
gi|326697221|gb|EGE48881.1| Peptide chain release factor 1 [Acetobacter pomorum DM001]
Length = 352
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D++V ++E DL+V+ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEDVDVEVNETDLRVDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE++SQ KNRA A+ L+ +YE
Sbjct: 239 RLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYE 274
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+V+ RA+GAGGQHVN T+SA R+T
Sbjct: 209 VEVNETDLRVDVFRASGAGGQHVNKTESAVRLT 241
>gi|359398832|ref|ZP_09191847.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
gi|357599775|gb|EHJ61479.1| peptide chain release factor RF-1 [Novosphingobium
pentaromativorans US6-1]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPSEVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+G+ V Q++RSQ KN+A A+ L+ +YE
Sbjct: 242 RITHLPSGLVVICQDERSQHKNKAKAMQVLRARLYE 277
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 169 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPSEV------DVQIEDKDLK 220
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 221 IDIYRASGAGGQHVNTTDSAVRIT 244
>gi|335048080|ref|ZP_08541100.1| peptide chain release factor 1 [Parvimonas sp. oral taxon 110 str.
F0139]
gi|333757880|gb|EGL35438.1| peptide chain release factor 1 [Parvimonas sp. oral taxon 110 str.
F0139]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 50/207 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +D++V +++ DL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPATESSGRIHTSAATVAVLPEVEDVDVVINQNDLRIDVYRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ+KN+ A+ LK +YE +++E++N
Sbjct: 243 RITHIPTGVVVTCQDEKSQLKNKEKAMKILKSRLYE-KYQEEQN---------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
KD+ K G+G + + T + R+TD
Sbjct: 286 ----------------------------KDIADARKSQIGSGDRSERIRTYNFPQGRVTD 317
Query: 178 HRIQRTVYNVAEFMSG--GAMLHELIS 202
HRI T+Y + F++G M+ LI+
Sbjct: 318 HRINMTIYQLDSFLNGDISDMIDALIT 344
>gi|312879994|ref|ZP_07739794.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas
paucivorans DSM 12260]
gi|310783285|gb|EFQ23683.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas
paucivorans DSM 12260]
Length = 357
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ ++++V + +DLK++T RA+GAGGQ+VN TDSAV
Sbjct: 184 VQRIPVTEAGGRIHTSTATVAVLPEAEEVDVQVRTEDLKIDTYRASGAGGQYVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q++RSQ+KNR A+ L+ +Y+++ ++Q+
Sbjct: 244 RITHVPTGLVVTCQDERSQLKNRVKAMQLLRTRLYDLELQKQQ----------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNT-TDSADRITDHR 179
AV E+ +V TG + + T + +R+TDHR
Sbjct: 287 ----------------------AVMAAERKGQV----GTGDRSERIRTYSYPQNRLTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + + G L+EL+
Sbjct: 321 IGFTLYKLDQVLDGD--LYELV 340
>gi|379012358|ref|YP_005270170.1| peptide chain release factor RF-1 [Acetobacterium woodii DSM 1030]
gi|375303147|gb|AFA49281.1| peptide chain release factor RF-1 [Acetobacterium woodii DSM 1030]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 51/215 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ +D+E+ + DL+V+ R++G GGQ VNTTDSAV
Sbjct: 184 VQRIPSTESGGRIHTSTATVAVLPEAEDVEIEIGANDLRVDVYRSSGNGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ+KN+ AL LK +YEI+ ++Q++ + R ++
Sbjct: 244 RITHIPTGMVVTCQDEKSQLKNKDKALKILKARLYEIEQQKQQS----EIAENRKSQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + RI+DHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNFPQGRISDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELISD-----IRQH 207
I TVY + F+ G M++ LI++ ++QH
Sbjct: 321 INVTVYQLEAFLDGDIDEMINALITNDQAEKLKQH 355
>gi|294101724|ref|YP_003553582.1| peptide chain release factor 1 [Aminobacterium colombiense DSM
12261]
gi|293616704|gb|ADE56858.1| peptide chain release factor 1 [Aminobacterium colombiense DSM
12261]
Length = 358
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 77/95 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +D++V + +DLK++T R++GAGGQHVN TDSAV
Sbjct: 184 VQRVPMTEAGGRIHTSTSTVAVLPEVEDVDVDIRTEDLKIDTYRSSGAGGQHVNMTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+TH+PTGI V Q++RSQIKNRA A+ L+ +Y
Sbjct: 244 RITHLPTGIVVTCQDERSQIKNRAKAMMYLRAKLY 278
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +DLK++T R++GAGGQHVN TDSA RIT
Sbjct: 214 VDIRTEDLKIDTYRSSGAGGQHVNMTDSAVRIT 246
>gi|399090598|ref|ZP_10754117.1| peptide chain release factor 1 [Caulobacter sp. AP07]
gi|398027667|gb|EJL21211.1| peptide chain release factor 1 [Caulobacter sp. AP07]
Length = 334
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ +++ DL+++T R++GAGGQHVN TDSAV
Sbjct: 159 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIEINDSDLRIDTYRSSGAGGQHVNKTDSAV 218
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q
Sbjct: 219 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQ---------------------- 255
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S +++ +G + + T + R+TDHR
Sbjct: 256 ----------REALDTARSDAR-----------KSQVGSGDRSERIRTYNFPQGRVTDHR 294
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+A + G A L ++I + D R+ L
Sbjct: 295 INLTLYNLARVIEGDA-LDDIIKPLIAEDQAARLASL 330
>gi|377556577|ref|ZP_09786277.1| Peptide chain release factor 1 (RF-1) [Lactobacillus gastricus PS3]
gi|376168281|gb|EHS87069.1| Peptide chain release factor 1 (RF-1) [Lactobacillus gastricus PS3]
Length = 362
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 82/103 (79%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+E+ LD+KD++V+ R++GAGGQH+N T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVEIDLDDKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDY-YQQQE 289
Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L++KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 218 IDLDDKDIRVDVYRSSGAGGQHINKTSSAVRMT 250
>gi|373471088|ref|ZP_09562161.1| peptide chain release factor 1 [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371761101|gb|EHO49748.1| peptide chain release factor 1 [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 356
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++V +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +YEI+ E+ K+SA
Sbjct: 242 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRSKLYEIELEK-----------KQSAEAAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + R+TDHR
Sbjct: 291 RRSQI--------------------------------GTGDRSEKIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + M+G + ELI
Sbjct: 319 INLTLYKLDKIMNGD--IQELI 338
>gi|357420932|ref|YP_004928378.1| peptide chain release factor 1 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803439|gb|AER40553.1| peptide chain release factor 1 [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 370
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS ++VAVLP+ K +E+++D D+K ET R++GAGGQHVN T+SAV
Sbjct: 196 VQRIPRTESQGRIHTSAITVAVLPEIKSVEMNIDLSDIKKETFRSSGAGGQHVNKTESAV 255
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THI + I+VE QE+RSQ KN A+ L+ IY+ + E++
Sbjct: 256 RLTHITSKITVECQEERSQHKNFEKAMKVLRSRIYKNEMEKR------------------ 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
++E+ +K ++ +TG + T + R+TDHR
Sbjct: 298 -------------------------IKERSIKRKSLISTGDRSVKIRTYNYPKSRVTDHR 332
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I +++Y++ FM+G + E+I
Sbjct: 333 IHKSIYDIVGFMNGN--IQEMI 352
>gi|420154949|ref|ZP_14661821.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
gi|394759930|gb|EJF42579.1| peptide chain release factor 1 [Clostridium sp. MSTE9]
Length = 360
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ D+E+ ++ DL+++T RA+GAGGQHVN T+SA+
Sbjct: 184 VQRVPETETQGRIHTSTATVAVLPEVDDVEIEINPTDLQIDTYRASGAGGQHVNKTESAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG VE Q++RSQ KN+ A+ L+ +YE + EQ+ ++ +R ++
Sbjct: 244 RITHLPTGTVVECQDERSQFKNKDKAMKVLRSRLYEAKQREQD----AQVAQQRKSQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + R+TDHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNFPQGRLTDHR 320
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + E +SG
Sbjct: 321 IGLTIYRLEEMLSG 334
>gi|338536127|ref|YP_004669461.1| peptide chain release factor 1 [Myxococcus fulvus HW-1]
gi|337262223|gb|AEI68383.1| peptide chain release factor 1 [Myxococcus fulvus HW-1]
Length = 362
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 47/211 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ +D++VH++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 182 VQRVPATETQGRIHTSTITVSVMPEAEDVDVHINPADIEMQVMRSTGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H PTGI V+ Q+++SQ+KNR A+ L+ +YEI+ E N
Sbjct: 242 RLIHHPTGIVVKCQQEKSQLKNRTMAMRMLRAKLYEIEQERIRN---------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+D + TG + + T + DR+TDHR
Sbjct: 286 ---------------------------ERDSARRAQVGTGDRSEKIRTYNFPQDRLTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I TV+N+ M+G + E+I+ R + YQ
Sbjct: 319 ISLTVHNLPGVMAGD--VEEVITACRTY-YQ 346
>gi|239947714|ref|ZP_04699467.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921990|gb|EER22014.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 355
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPT I+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTSITVALQDEKSQHKNKAKALKILRARIY 277
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASALIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|255280026|ref|ZP_05344581.1| peptide chain release factor 1 [Bryantella formatexigens DSM 14469]
gi|255269117|gb|EET62322.1| peptide chain release factor 1 [Marvinbryantia formatexigens DSM
14469]
Length = 357
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 81/98 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTVTVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH PTGI V SQ ++SQ++N+A A A L+ +Y+I+
Sbjct: 243 RLTHYPTGIVVYSQTEKSQLQNKAKAFALLRAKLYDIE 280
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + VY+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVVYSQTE 258
>gi|412993093|emb|CCO16626.1| peptide chain release factor 1 [Bathycoccus prasinos]
Length = 939
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDE-KDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTST SVA++P+ ++ ++H+DE KD+++ET RA+GAGGQHVNTT+SA
Sbjct: 762 VQRVPATETQGRIHTSTASVAIIPKAEESDIHIDETKDVRIETMRASGAGGQHVNTTNSA 821
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
VR+ HIPTG++V Q++RSQ KN+A AL+ L+ +Y+I+
Sbjct: 822 VRIVHIPTGVTVVIQDERSQHKNKAKALSVLRARVYDIE 860
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 30/33 (90%), Gaps = 1/33 (3%)
Query: 144 VHLEE-KDLKVETKRATGAGGQHVNTTDSADRI 175
+H++E KD+++ET RA+GAGGQHVNTT+SA RI
Sbjct: 792 IHIDETKDVRIETMRASGAGGQHVNTTNSAVRI 824
>gi|241116888|ref|XP_002401657.1| protein releasing factor, putative [Ixodes scapularis]
gi|215493201|gb|EEC02842.1| protein releasing factor, putative [Ixodes scapularis]
Length = 358
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLKIDTYRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPT I+V Q+++SQ KN+A AL L+ IY
Sbjct: 246 RITHIPTSITVALQDEKSQHKNKAKALKILRARIY 280
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 164 ASALIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 214
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 215 DIKIEDKDLKIDTYRASGAGGQHVNTTDSAVRIT 248
>gi|145348023|ref|XP_001418457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578686|gb|ABO96750.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 373
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 49/219 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST S+AVLP +++E+ + E+D++++T RA+GAGGQHVNTT+SAV
Sbjct: 201 VQRVPETETQGRVHTSTASIAVLPHAEEVEMDIKEEDVRIDTMRASGAGGQHVNTTNSAV 260
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V Q++RSQ KN+A A + LK +Y+++ E ++ +RS
Sbjct: 261 RLTHAPTGIQVVIQDERSQHKNKAKAFSVLKARLYDLERE--------KMAKERS----- 307
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
L SS TG + + T + A R+ DHR
Sbjct: 308 ---------------ELRSSLI---------------GTGDRSERIRTYNFAQGRVKDHR 337
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
++ T+ +V M G +L E+ +++ R+++LL+
Sbjct: 338 VEGTISDVNALMD-GFLLDEITEKLKRK----RVEELLA 371
>gi|402848548|ref|ZP_10896805.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
gi|402501295|gb|EJW12950.1| Peptide chain release factor 1 [Rhodovulum sp. PH10]
Length = 359
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 108/196 (55%), Gaps = 42/196 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ ++++V +DEKDL+++T R++GAGGQHVN T+SA+
Sbjct: 183 VQRVPETEASGRIHTSAATVAVLPEAEEVDVAIDEKDLEIDTMRSSGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+P+GI V QE+RSQ +NRA A+A L+ +Y+ E++ R R +R
Sbjct: 243 RVKHVPSGIVVFVQEERSQHRNRAKAMAMLRAKLYDA---ERQRRDSERAADRRGQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 320
Query: 181 QRTVYNVAEFMSGGAM 196
T+Y + + M G A+
Sbjct: 321 GLTLYKLPQVMQGEAL 336
>gi|397690016|ref|YP_006527270.1| peptide chain release factor 1 [Melioribacter roseus P3M]
gi|395811508|gb|AFN74257.1| peptide chain release factor 1 [Melioribacter roseus P3M]
Length = 360
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 48/210 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS SV VLP+ +D++V +D DL+++ R+ GAGGQ+VN ++A+
Sbjct: 185 VQRVPETEASGRIHTSAASVVVLPEVEDVDVEIDPNDLRIDAYRSGGAGGQNVNKVETAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVV--RLVTKRSART 118
R+TH+PTG+ V+ Q++RSQ+KNR A+ LK +Y+++ +EQ + +L+ ++ R+
Sbjct: 245 RITHLPTGLVVQCQDERSQLKNRQKAMKVLKARLYDMKMQEQMSEISAQRKLMVRKGDRS 304
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDH 178
RT P +R+TDH
Sbjct: 305 DKIRT-----------YNFPQ---------------------------------NRVTDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
RI T+YN+ M G L ELI ++ D
Sbjct: 321 RIGLTLYNLDSIMEGD--LDELIEKLKIAD 348
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 10 SGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGI 69
S +L + VL PKD D+KD+ VE + G GG+ A + + +
Sbjct: 87 SKKLEELEEKIKVLLIPKDPN---DDKDVIVEIR--AGTGGEEAGLF--AADLYRMYSRY 139
Query: 70 SVESQEDRSQIKNRANALAKLKRLIY---------EIQFEEQENRWVVRLVTKRSARTII 120
+ + + I L +K +++ +++FE +R V+ V + A I
Sbjct: 140 AEKRGWQKELIDISDTGLGGIKEVVFSLSGTNVFGDMKFESGVHR--VQRVPETEASGRI 197
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
H + + ++ E V ++ DL+++ R+ GAGGQ+VN ++A RIT
Sbjct: 198 HTSAASVVVLPEVEDV------DVEIDPNDLRIDAYRSGGAGGQNVNKVETAIRIT 247
>gi|193222210|emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas
arsenicoxydans]
Length = 361
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 185 VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 244
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+THIPTGI VE Q+DRSQ KN+A+AL L I ++Q EQ+++
Sbjct: 245 VRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQ 290
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 216 VNINPADLRIDTYRASGAGGQHINKTDSAVRIT 248
>gi|114569197|ref|YP_755877.1| peptide chain release factor 1 [Maricaulis maris MCS10]
gi|119361557|sp|Q0ARZ8.1|RF1_MARMM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|114339659|gb|ABI64939.1| bacterial peptide chain release factor 1 (bRF-1) [Maricaulis maris
MCS10]
Length = 357
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VA++PQP+DI++ LD D++V+T RA+GAGGQHVN TDSAV
Sbjct: 182 VQRVPATESQGRIHTSAATVAIMPQPEDIDIELDMGDVRVDTMRASGAGGQHVNKTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
RMTHIPTG+ V QE +SQ +NRA A LK +Y++Q
Sbjct: 242 RMTHIPTGLVVVCQE-KSQHQNRARAQEILKAKLYDMQ 278
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ D++V+T RA+GAGGQHVN TDSA R+T
Sbjct: 212 IELDMGDVRVDTMRASGAGGQHVNKTDSAVRMT 244
>gi|110003948|emb|CAK98288.1| peptide chain release factor 1 protein [Spiroplasma citri]
Length = 358
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTST +VAVLP+ ++++ + DLK++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRIPKTESKGRVHTSTATVAVLPEIEEVDFEIKTADLKIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEE-QENRWVVR 109
R+TH+PTG V SQ+ RSQ N+A A+ L+ +YE Q + E RW +R
Sbjct: 247 RITHLPTGFVVTSQDGRSQHDNKALAMQHLRSKLYEEQQRKINEERWTLR 296
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 223 DLKIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|67969776|dbj|BAE01236.1| unnamed protein product [Macaca fascicularis]
Length = 378
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVNTT
Sbjct: 193 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNTTV 252
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ E+ + ++SAR
Sbjct: 253 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDK-------CQQQSAR 305
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR++
Sbjct: 306 KL------------------------------------QVGTRAQSERIRTYNFTQDRVS 329
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ GG L +LI + Q
Sbjct: 330 DHRIAYEVRDIKEFLCGGKGLDQLIQRLLQ 359
>gi|344281766|ref|XP_003412648.1| PREDICTED: peptide chain release factor 1, mitochondrial [Loxodonta
africana]
Length = 446
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 114/210 (54%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +I+V +D DL+V+T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEIDVKVDPNDLRVDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E++ ++SAR
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRAKLYQ-QIVEKDR------CQQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ G L +LI + Q
Sbjct: 398 DHRIAYEVRDIKEFLCGEKALDQLIQRLLQ 427
>gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans]
Length = 356
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 180 VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 239
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+THIPTGI VE Q+DRSQ KN+A+AL L I ++Q EQ+++
Sbjct: 240 VRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQ 285
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 211 VNINPADLRIDTYRASGAGGQHINKTDSAVRIT 243
>gi|62185243|ref|YP_220028.1| peptide chain release factor 1 [Chlamydophila abortus S26/3]
gi|81312600|sp|Q5L5L4.1|RF1_CHLAB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|62148310|emb|CAH64077.1| peptide chain release factor 1 [Chlamydophila abortus S26/3]
Length = 361
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 116/214 (54%), Gaps = 52/214 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I EIQ +E + RSA
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEIQRRHKEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + S +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFSQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
TDHRI T+Y++ + M G L + S + H Y
Sbjct: 318 TDHRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|424825284|ref|ZP_18250271.1| peptide chain release factor 1 [Chlamydophila abortus LLG]
gi|333410383|gb|EGK69370.1| peptide chain release factor 1 [Chlamydophila abortus LLG]
Length = 361
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 116/214 (54%), Gaps = 52/214 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I EIQ +E + RSA
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEIQRRHKEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + S +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFSQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
TDHRI T+Y++ + M G L + S + H Y
Sbjct: 318 TDHRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille]
gi|166223564|sp|A6SUF6.1|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|151280214|gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille]
Length = 360
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+THIPTGI VE Q+DRSQ KN+A+AL L I ++Q EQ+++
Sbjct: 244 VRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSK 289
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 215 VNINPADLRIDTYRASGAGGQHINKTDSAVRIT 247
>gi|339018166|ref|ZP_08644307.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
tropicalis NBRC 101654]
gi|338752725|dbj|GAA07611.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
tropicalis NBRC 101654]
Length = 352
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +DE DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVTVDEGDLRIDVYRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V QE++SQ KNRA A+ L+ +YE
Sbjct: 239 RITHLPTGIVVAMQEEKSQHKNRAKAMKILRARLYE 274
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VTVDEGDLRIDVYRASGAGGQHVNKTESAVRIT 241
>gi|350566959|ref|ZP_08935573.1| peptide chain release factor RF1 [Peptoniphilus indolicus ATCC
29427]
gi|348659928|gb|EGY76643.1| peptide chain release factor RF1 [Peptoniphilus indolicus ATCC
29427]
Length = 354
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 87/117 (74%), Gaps = 4/117 (3%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D+EV +D ++K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSTATVAVLPEVEDVEVEIDPTEIKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
R+THIPTG+ + Q+++SQ+KN+ AL LK +Y+++ EQ+ L +RSA+
Sbjct: 243 RLTHIPTGLVISCQDEKSQLKNKEKALKVLKTKLYDLKMREQQG----ELSDQRSAQ 295
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ ++K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 VEIDPTEIKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|210608516|ref|ZP_03287892.1| hypothetical protein CLONEX_00071 [Clostridium nexile DSM 1787]
gi|210153007|gb|EEA84013.1| hypothetical protein CLONEX_00071 [Clostridium nexile DSM 1787]
Length = 358
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 185 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 245 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 288
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 215 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 260
>gi|343520488|ref|ZP_08757457.1| peptide chain release factor 1 [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397446|gb|EGV09980.1| peptide chain release factor 1 [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 114/207 (55%), Gaps = 50/207 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +D++V +++ DL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPATESSGRIHTSAATVAVLPEVEDVDVVINQNDLRIDVYRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ+KN+ A+ LK +YE +++E++N
Sbjct: 243 RITHIPTGLVVTCQDEKSQLKNKDKAMKILKSRLYE-KYQEEQN---------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
KD+ K G+G + + T + R+TD
Sbjct: 286 ----------------------------KDIADARKSQIGSGDRSERIRTYNFPQGRVTD 317
Query: 178 HRIQRTVYNVAEFMSG--GAMLHELIS 202
HRI T+Y + F++G M+ LI+
Sbjct: 318 HRINMTIYQLDSFLNGDISDMIDALIT 344
>gi|239617233|ref|YP_002940555.1| peptide chain release factor 1 [Kosmotoga olearia TBF 19.5.1]
gi|239506064|gb|ACR79551.1| peptide chain release factor 1 [Kosmotoga olearia TBF 19.5.1]
Length = 361
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +++V +D +L+++T R++GAGGQHVN T+SAV
Sbjct: 183 VQRVPQTESGGRIHTSTATVAVLPKASEVDVAIDPSELRIDTFRSSGAGGQHVNRTESAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI+V Q +RSQ +N+A A+ L+ +Y + +QE+ T+
Sbjct: 243 RIVHLPTGITVTVQSERSQHQNKARAMEILRARLYSLYRSQQES-------------TLS 289
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ S I TG + + T + +R+TDHR
Sbjct: 290 QQRRSQI------------------------------GTGERSEKIRTYNFPQNRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
I T Y + + + G L ELI+ + + D ++++LL
Sbjct: 320 INYTTYRLQDILDGD--LDELIAKLAEADINIKLEKLL 355
>gi|225575054|ref|ZP_03783664.1| hypothetical protein RUMHYD_03143 [Blautia hydrogenotrophica DSM
10507]
gi|225037724|gb|EEG47970.1| peptide chain release factor 1 [Blautia hydrogenotrophica DSM
10507]
Length = 357
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 80/102 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VA++P+ ++I+ HLD D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAIMPEAEEIDFHLDLNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ+KN+ AL L+ +YE++ ++Q
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELQKQ 284
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
HL+ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 FHLDLNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|304440460|ref|ZP_07400349.1| peptide chain release factor RF1 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371212|gb|EFM24829.1| peptide chain release factor RF1 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 355
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 82/102 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D+E+ +D D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSTATVAVLPEAEDVEIEIDPSDIRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTGI + Q+++SQ+KN+ A+ LK +Y+++ ++Q
Sbjct: 243 RITHLPTGIVISCQDEKSQLKNKEKAMKILKTKLYDLELQKQ 284
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++V+ R++G GGQ VNTTDSA RIT
Sbjct: 213 IEIDPSDIRVDVFRSSGNGGQSVNTTDSAVRIT 245
>gi|410943223|ref|ZP_11374964.1| peptide chain release factor 1 [Gluconobacter frateurii NBRC
101659]
Length = 353
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V QE++SQ KNRA A+ L+ +YE Q R+
Sbjct: 240 RITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQ------------------RSAA 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H + + D K ++ TG + + T + R+TDHR
Sbjct: 282 HESRAA-----------------------DRK--SQVGTGDRSERIRTYNFPQGRVTDHR 316
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + M+G
Sbjct: 317 INLTLYKIERIMAG 330
>gi|329943005|ref|ZP_08291779.1| peptide chain release factor 1 [Chlamydophila psittaci Cal10]
gi|332287587|ref|YP_004422488.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC]
gi|384450744|ref|YP_005663344.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC]
gi|384451739|ref|YP_005664337.1| peptide chain release factor 1 [Chlamydophila psittaci 01DC11]
gi|384452713|ref|YP_005665310.1| peptide chain release factor 1 [Chlamydophila psittaci 08DC60]
gi|384453692|ref|YP_005666288.1| peptide chain release factor 1 [Chlamydophila psittaci C19/98]
gi|384454671|ref|YP_005667266.1| peptide chain release factor 1 [Chlamydophila psittaci 02DC15]
gi|392376818|ref|YP_004064596.1| peptide chain release factor 1 [Chlamydophila psittaci RD1]
gi|407454211|ref|YP_006733319.1| peptide chain release factor 1 [Chlamydia psittaci 84/55]
gi|313848161|emb|CBY17162.1| peptide chain release factor 1 [Chlamydophila psittaci RD1]
gi|325506915|gb|ADZ18553.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC]
gi|328814552|gb|EGF84542.1| peptide chain release factor 1 [Chlamydophila psittaci Cal10]
gi|328914838|gb|AEB55671.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC]
gi|334692473|gb|AEG85692.1| peptide chain release factor 1 [Chlamydophila psittaci C19/98]
gi|334693449|gb|AEG86667.1| peptide chain release factor 1 [Chlamydophila psittaci 01DC11]
gi|334694428|gb|AEG87645.1| peptide chain release factor 1 [Chlamydophila psittaci 02DC15]
gi|334695402|gb|AEG88618.1| peptide chain release factor 1 [Chlamydophila psittaci 08DC60]
gi|405780970|gb|AFS19720.1| peptide chain release factor 1 [Chlamydia psittaci 84/55]
Length = 361
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAENDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + +
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRR---------------- 286
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
H+ S A R + +G + + T + S +R+TD
Sbjct: 287 --HKEAS---AMR----------------------SAQVGSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+Y++ + M G L + S + H Y
Sbjct: 320 HRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP + V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----ENDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|390562364|ref|ZP_10244589.1| peptide chain release factor 1 [Nitrolancetus hollandicus Lb]
gi|390173090|emb|CCF83891.1| peptide chain release factor 1 [Nitrolancetus hollandicus Lb]
Length = 367
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+PK++EV + ++DL+++ R+TG GGQ VNTTDSAV
Sbjct: 184 VQRIPVTESGGRIHTSTATVAVLPEPKEVEVDVKDEDLRIDVYRSTGHGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ+KN+A A+ L+ +Y+I+
Sbjct: 244 RITHIPTGIVVTCQDEKSQLKNKAKAMTVLRARLYDIE 281
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 30/163 (18%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIK---N 82
PKD +DEK++ VE + TG ++A+ + ++ ++ +R +++ +
Sbjct: 102 PKD---PMDEKNVIVEIRAGTGG-------DEAALFAADLFRMYTLYAERNRWKVEVLSS 151
Query: 83 RANALAKLKRLIYEI---------QFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREP 133
+ K +++E+ +FE +R VT+ R IH + + + EP
Sbjct: 152 NETGIGGFKEIVFEVRGNGAYSHLKFESGVHRVQRIPVTESGGR--IHTSTATVAVLPEP 209
Query: 134 CTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++++DL+++ R+TG GGQ VNTTDSA RIT
Sbjct: 210 KEV------EVDVKDEDLRIDVYRSTGHGGQSVNTTDSAVRIT 246
>gi|323136601|ref|ZP_08071682.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
gi|322397918|gb|EFY00439.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLPQ +D+++ +DEKDL+++T RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPETETQGRIHTSAATVAVLPQAEDVDIDIDEKDLQIDTMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+GI V QE+RSQ +N+A A+ L+ +Y+ +
Sbjct: 243 RITHIPSGIVVMMQEERSQHRNKAKAMNVLRSRLYDAE 280
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 14/165 (8%)
Query: 15 TSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD--SAVRMTHIPTGISVE 72
+T+ +A+LP+ + DEK + +E + TG + D A + G VE
Sbjct: 92 ANTLRLALLPKDE-----ADEKGVILEVRAGTGGDEAALFAGDLFRAYQKYAALKGWRVE 146
Query: 73 SQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE 132
+ AL K ++ EI R R R T+ I
Sbjct: 147 L------VSESPGALGGFKEIVAEIIGRGVYGRLKFESGVHRVQRVPETETQGRIHTSAA 200
Query: 133 PCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + + ++EKDL+++T RA GAGGQHVN T+SA RIT
Sbjct: 201 TVAVLPQAEDVDIDIDEKDLQIDTMRAQGAGGQHVNKTESAIRIT 245
>gi|218133361|ref|ZP_03462165.1| hypothetical protein BACPEC_01226 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992234|gb|EEC58238.1| peptide chain release factor 1 [[Bacteroides] pectinophilus ATCC
43243]
Length = 363
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 189 VQRVPETESGGRIHTSTATVAVMPEAEEVDVQIDEKDIRIDVMRASGNGGQCVNTTDSAV 248
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQI+N+ A A L+ +Y+++
Sbjct: 249 RLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDME---------------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
C H E D + ++ TG + + T + R+TDHR
Sbjct: 287 --------------------CQKAHDAEADAR-RSQIGTGDRSEKIRTYNFPQGRVTDHR 325
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M G
Sbjct: 326 IGLTLYKLDKIMDG 339
>gi|15618037|ref|NP_224321.1| peptide chain release factor 1 [Chlamydophila pneumoniae CWL029]
gi|15835649|ref|NP_300173.1| peptide chain release factor 1 [Chlamydophila pneumoniae J138]
gi|16752931|ref|NP_445202.1| peptide chain release factor 1 [Chlamydophila pneumoniae AR39]
gi|33241449|ref|NP_876390.1| peptide chain release factor 1 [Chlamydophila pneumoniae TW-183]
gi|384449622|ref|YP_005662224.1| peptide chain release factor 1 [Chlamydophila pneumoniae LPCoLN]
gi|6225941|sp|Q9Z968.1|RF1_CHLPN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|4376376|gb|AAD18266.1| Peptide Chain Releasing Factor [Chlamydophila pneumoniae CWL029]
gi|7189573|gb|AAF38472.1| peptide chain release factor 1 [Chlamydophila pneumoniae AR39]
gi|8978487|dbj|BAA98324.1| peptide chain releasing factor [Chlamydophila pneumoniae J138]
gi|33235957|gb|AAP98047.1| translation releasing factor RF-1 [Chlamydophila pneumoniae TW-183]
gi|269302994|gb|ACZ33094.1| peptide chain release factor 1 [Chlamydophila pneumoniae LPCoLN]
Length = 357
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 46/196 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS +++AVLP+P +D E+ ++EKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITIAVLPEPSEEDTELLINEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+ A+ LK I + + +++ N RSA+
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKDKAMRILKARIRDAEMQKRHNEA----SAMRSAQV 298
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
+G + + T + S +R+TD
Sbjct: 299 ---------------------------------------GSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSG 193
HRI T+YN+ + M G
Sbjct: 320 HRIGLTLYNLDKVMEG 335
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 19 SVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PTGISVE-- 72
S+ V P P D DL V + G GG+ VRM H+ G E
Sbjct: 97 SLLVPPDPDD--------DLNVIMELRAGTGGEEAALFVGDCVRMYHLYASSKGWKYEVL 148
Query: 73 --SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPII 128
S+ D K ++ +KRL+ Q+E +R V+ V + + +H + I
Sbjct: 149 SASESDLKGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVHTSAITIA 203
Query: 129 AFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
EP + + EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 204 VLPEPS----EEDTELLINEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|326203238|ref|ZP_08193103.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782]
gi|325986496|gb|EGD47327.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782]
Length = 359
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST++VAVLP+ ++++V ++ DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+P+GI V Q++RSQ KN+ A+ L+ +YEI E+Q N
Sbjct: 243 RITHMPSGIVVSCQDERSQHKNKDRAMKILRSKLYEIAQEQQIN 286
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 213 VDINPNDLRIDTYRASGAGGQHINKTDSAIRIT 245
>gi|336420906|ref|ZP_08601067.1| peptide chain release factor 1 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336003925|gb|EGN34001.1| peptide chain release factor 1 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D+++ +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDIQIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +Y+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRAKLYDME---------------------- 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
C H E + + +++ TG + + T + R+TDHR
Sbjct: 281 --------------------CQKRHDAEAEAR-KSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 IGLTLYKLDKIMNG 333
>gi|299144121|ref|ZP_07037201.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518606|gb|EFI42345.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 81/102 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D+E+ ++ D+K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESSGRIHTSTATVAVLPEAEDVEIDIEPSDIKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ++N+ A+ LK +Y+++ +EQ
Sbjct: 243 RLTHIPTGIVISCQDEKSQLRNKEKAMKILKTKLYDLKLQEQ 284
Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E D+K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 IDIEPSDIKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|167759398|ref|ZP_02431525.1| hypothetical protein CLOSCI_01745 [Clostridium scindens ATCC 35704]
gi|167662955|gb|EDS07085.1| peptide chain release factor 1 [Clostridium scindens ATCC 35704]
Length = 356
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D+++ +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDIQIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +Y+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFALLRAKLYDME---------------------- 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
C H E + + +++ TG + + T + R+TDHR
Sbjct: 281 --------------------CQKRHDAEAEAR-KSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 IGLTLYKLDKIMNG 333
>gi|50365449|ref|YP_053874.1| peptide chain release factor 1 [Mesoplasma florum L1]
gi|61214613|sp|Q6F0I3.1|RF1_MESFL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|50364005|gb|AAT75990.1| peptide chain release factor 1 [Mesoplasma florum L1]
Length = 363
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ D+E+ + DL+++T R++GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSDVEIEIKNSDLRIDTYRSSGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTG+ SQ+ RSQ N+ A+ L+ IYE + E+Q+
Sbjct: 247 RITHIPTGVVAASQDGRSQHDNKDIAMTMLRARIYEAELEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 87 LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPS-SCPAVH 145
+ K R+ +++FE +R V+ V K A+ I + + + LP S +
Sbjct: 168 MVKGDRVYSKLKFESGAHR--VQRVPKTEAKGRIQTSTATV-------AVLPEMSDVEIE 218
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++ DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 219 IKNSDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
>gi|452752732|ref|ZP_21952473.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
gi|451960123|gb|EMD82538.1| Peptide chain release factor 1 [alpha proteobacterium JLT2015]
Length = 363
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 81/100 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +D+++ +++ DL+V+ RA+GAGGQHVNTTDSAV
Sbjct: 189 VQRVPATEASGRIHTSAATVAVLPEAEDVDIEINDSDLRVDVFRASGAGGQHVNTTDSAV 248
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+TH+P+G+ V Q+++SQ KNRA A+ L+ ++E++ E
Sbjct: 249 RITHVPSGLVVSQQDEKSQHKNRAKAMKVLRARLFEMERE 288
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + + DL+V+ RA+GAGGQHVNTTDSA RIT
Sbjct: 219 IEINDSDLRVDVFRASGAGGQHVNTTDSAVRIT 251
>gi|407455490|ref|YP_006734381.1| peptide chain release factor 1 [Chlamydia psittaci GR9]
gi|407458225|ref|YP_006736530.1| peptide chain release factor 1 [Chlamydia psittaci WS/RT/E30]
gi|405782033|gb|AFS20782.1| peptide chain release factor 1 [Chlamydia psittaci GR9]
gi|405785309|gb|AFS24055.1| peptide chain release factor 1 [Chlamydia psittaci WS/RT/E30]
Length = 361
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + +
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRR---------------- 286
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
H+ S A R + +G + + T + S +R+TD
Sbjct: 287 --HKEAS---AMR----------------------SAQVGSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+Y++ + M G L + S + H Y
Sbjct: 320 HRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|453331298|dbj|GAC86877.1| peptide chain release factor 1 [Gluconobacter thailandicus NBRC
3255]
Length = 353
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V QE++SQ KNRA A+ L+ +YE Q R+
Sbjct: 240 RITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQ------------------RSAA 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E + +++ TG + + T + R+TDHR
Sbjct: 282 H-------------------------ESRAADRKSQVGTGDRSERIRTYNFPQGRVTDHR 316
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + M+G
Sbjct: 317 INLTLYKIERIMAG 330
>gi|301760227|ref|XP_002915915.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Ailuropoda melanoleuca]
gi|281349098|gb|EFB24682.1| hypothetical protein PANDA_003948 [Ailuropoda melanoleuca]
Length = 445
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 47/208 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIE----------------- 362
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
++ C + + L+V T+ A + + T + + DR+T
Sbjct: 363 -------------KDKCQQQST---------RKLQVGTR----AQSERIRTYNFTQDRVT 396
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDI 204
DHRI V ++ EF+ G L +LI +
Sbjct: 397 DHRIAYEVRDIKEFLCGEKCLDQLIQTL 424
>gi|262277608|ref|ZP_06055401.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
gi|262224711|gb|EEY75170.1| peptide chain release factor 1 [alpha proteobacterium HIMB114]
Length = 355
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTS +VAVLP+ +D++V +DE +L+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPKTETQGRVHTSAATVAVLPEAEDVDVKIDENELRIDVFRSSGPGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+GI V Q+++SQ KN+A AL L+ +YE++ + E + SAR
Sbjct: 244 RITHIPSGIVVSQQDEKSQHKNKAKALKILRSKLYELERSKLEKE-------RSSAR--- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 294 ---------------------------------KSQIGSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T++ +++F+SG ISD Q +Q
Sbjct: 321 INLTLHKLSDFLSGDVFSE--ISDALQIQFQ 349
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 8 EKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGA------GGQHVNTTDSAVR 61
EK G L T + + PKD DEK+ +E + TG G
Sbjct: 87 EKIGDLETK---IKIFMLPKD---EADEKNAIIEIRAGTGGLEASLFAGDLFEMYQKVAS 140
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
T I S D K ++ K + +++FE +R V+ V K + +H
Sbjct: 141 NNGWKTEIISISDSDAGGYKEVVFSVTG-KNVFSKLKFESGVHR--VQRVPKTETQGRVH 197
Query: 122 RTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + + LP + V ++E +L+++ R++G GGQ VNTTDSA RIT
Sbjct: 198 TSAATV-------AVLPEAEDVDVKIDENELRIDVFRSSGPGGQSVNTTDSAVRIT 246
>gi|146329088|ref|YP_001209002.1| peptide chain release factor 1 [Dichelobacter nodosus VCS1703A]
gi|146232558|gb|ABQ13536.1| peptide chain release factor 1 [Dichelobacter nodosus VCS1703A]
Length = 365
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 49/197 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE SGR+HTS +VAVLP+ +IE + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 187 VQRVPETEASGRIHTSAATVAVLPESDEIEDIEINPADLRVDTFRASGAGGQHVNKTDSA 246
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A+ RW+ + R +
Sbjct: 247 IRITHLPTGIVVECQEERSQHKNRAKAM-----------------RWLYAKLMDRERQAA 289
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSAD-RIT 176
EK++ E K G G + + T + R+T
Sbjct: 290 ----------------------------EKEIAAERKSLVGTGDRSERIRTYNYPQGRVT 321
Query: 177 DHRIQRTVYNVAEFMSG 193
DHRI T+Y + + ++G
Sbjct: 322 DHRINLTLYALDDVLNG 338
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 91 KRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSS--CPAVHLEE 148
+R+ ++FE +R V+ V + A IH + + + LP S + +
Sbjct: 172 QRVYSTLKFESGAHR--VQRVPETEASGRIHTSAATV-------AVLPESDEIEDIEINP 222
Query: 149 KDLKVETKRATGAGGQHVNTTDSADRIT 176
DL+V+T RA+GAGGQHVN TDSA RIT
Sbjct: 223 ADLRVDTFRASGAGGQHVNKTDSAIRIT 250
>gi|407459477|ref|YP_006737580.1| peptide chain release factor 1 [Chlamydia psittaci M56]
gi|405786502|gb|AFS25247.1| peptide chain release factor 1 [Chlamydia psittaci M56]
Length = 361
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + +
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRR---------------- 286
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
H+ S A R + +G + + T + S +R+TD
Sbjct: 287 --HKEAS---AMR----------------------SAQVGSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+Y++ + M G L + S + H Y
Sbjct: 320 HRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRLI Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLI---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|227873770|ref|ZP_03991999.1| peptide chain release factor RF1 [Oribacterium sinus F0268]
gi|227840386|gb|EEJ50787.1| peptide chain release factor RF1 [Oribacterium sinus F0268]
Length = 358
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D++V ++ D+++E R++GAGGQH+N T SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEVEDVQVEINPADVRMEVFRSSGAGGQHINKTSSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H PTG+ E QE+RSQ++NR A+ L+ +YEI+ E+Q++ KRS
Sbjct: 243 RLIHEPTGLVAECQEERSQVQNREKAMRLLRARLYEIELEKQQSE---NAAEKRS----- 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ TG + + T + R+TDHR
Sbjct: 295 -----------------------------------QLGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I+ T+YN+ +SG
Sbjct: 320 IKLTLYNIDAVLSG 333
>gi|254504878|ref|ZP_05117029.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
gi|222440949|gb|EEE47628.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11]
Length = 357
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLPQ +++++ + + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPATESGGRIHTSAATVAVLPQAENVDIDVQDSDLRIDTFRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQ KN+A A+ L+ IY+ EE+E R
Sbjct: 243 RITHIPTGIVVAVQDERSQHKNKARAMQLLRARIYD---EERE-------------RAAS 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RTE+ + L+V +G + + T + R+TDHR
Sbjct: 287 ERTEA-----------------------RRLQV----GSGDRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + + ++G + L E+I + DYQ
Sbjct: 320 IGLTLYKLDQIIAGES-LDEVIEAL-ILDYQ 348
>gi|348583491|ref|XP_003477506.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Cavia porcellus]
Length = 446
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 112/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D +DL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPRDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQ+KN+ AL L+ +Y+ E + ++SAR
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIERDK-------CQQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V + EF+ G L +LI + Q
Sbjct: 398 DHRIAYEVRGIKEFLCGEKYLDQLIQRLLQ 427
>gi|255993956|ref|ZP_05427091.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
gi|255993624|gb|EEU03713.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989]
Length = 357
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 102/196 (52%), Gaps = 48/196 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ D+EV L+ D++V+ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPTTESSGRVHTSAATVAVLPEMDDVEVDLNPNDVRVDVYRSSGNGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V Q+++SQIKN+ A LK +Y ++ EEQ
Sbjct: 244 RLTHEPTGIVVTCQDEKSQIKNKDKAFKVLKSRLYNLKMEEQ------------------ 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K L E K G+G + + T + R++D
Sbjct: 286 ---------------------------NKQLSDERKSQVGSGDRSERIRTYNFPQGRVSD 318
Query: 178 HRIQRTVYNVAEFMSG 193
HRI T+Y + FM+G
Sbjct: 319 HRIGLTIYKLDNFMNG 334
>gi|255020676|ref|ZP_05292738.1| Peptide chain release factor 1 [Acidithiobacillus caldus ATCC
51756]
gi|340781209|ref|YP_004747816.1| peptide chain release factor 1 [Acidithiobacillus caldus SM-1]
gi|254969912|gb|EET27412.1| Peptide chain release factor 1 [Acidithiobacillus caldus ATCC
51756]
gi|340555362|gb|AEK57116.1| Peptide chain release factor 1 [Acidithiobacillus caldus SM-1]
Length = 365
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 115/214 (53%), Gaps = 48/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+ + E+H+ DL+++T RA+GAGGQHVN TDSA
Sbjct: 189 VQRVPETESQGRIHTSACTVAVLPEVDAVHEIHIQPSDLRIDTYRASGAGGQHVNKTDSA 248
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTG+ V QEDRSQ KNRA A+A L+ + E+ E+QE+ T + R++
Sbjct: 249 IRITHLPTGLVVACQEDRSQHKNRARAMALLQARLLEMVREQQES------STAATRRSL 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
I +G + + T + RITDH
Sbjct: 303 I-------------------------------------GSGDRSERIRTYNFPQGRITDH 325
Query: 179 RIQRTVYNVAEFMSGGAMLHELISD-IRQHDYQF 211
RI T+Y + ++G L LI IR+H +
Sbjct: 326 RINLTIYRLEAVLAG--ELDALIDPLIREHQAEL 357
>gi|429335284|ref|ZP_19215921.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
gi|428760086|gb|EKX82363.1| peptide chain release factor 1 [Pseudomonas putida CSV86]
Length = 360
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA-------------- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSAD-RIT 176
+ E K G+G + + T + R+T
Sbjct: 292 -------------------------------MASERKLLVGSGDRSERIRTYNYPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLDEVLAGGVDAVIEPLLA-------EYQADQL 355
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 177 LKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQV-----AIEINPADLRVDTY 229
Query: 157 RATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 230 RASGAGGQHVNKTDSAIRIT 249
>gi|87198313|ref|YP_495570.1| peptide chain release factor 1 [Novosphingobium aromaticivorans DSM
12444]
gi|119361571|sp|Q2GBN7.1|RF1_NOVAD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|87133994|gb|ABD24736.1| bacterial peptide chain release factor 1 (bRF-1) [Novosphingobium
aromaticivorans DSM 12444]
Length = 354
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 80/98 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 180 VQRVPVTESGGRIHTSAATVAVLPEPDEVDVAIEDKDLKIDIYRASGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+P+G+ V Q++RSQ KN+A A+ L+ +Y+++
Sbjct: 240 RITHLPSGLVVTCQDERSQHKNKAKAMQVLRTRLYDMR 277
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 167 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPDEV------DVAIEDKDLK 218
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 219 IDIYRASGAGGQHVNTTDSAVRIT 242
>gi|33152002|ref|NP_873355.1| peptide chain release factor 1 [Haemophilus ducreyi 35000HP]
gi|46576749|sp|Q7VMV9.1|RF1_HAEDU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|33148224|gb|AAP95744.1| peptide chain release factor 1 (RF-1) [Haemophilus ducreyi 35000HP]
Length = 360
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 119/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI VE Q++RSQ KN+A ALA L I ++ EQE + + + T+R+
Sbjct: 244 VRITHLPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAMAQADTRRNLLGT 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|414343457|ref|YP_006984978.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
gi|411028792|gb|AFW02047.1| peptide chain release factor 1 [Gluconobacter oxydans H24]
Length = 353
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V QE++SQ KNRA A+ L+ +YE Q R+
Sbjct: 240 RITHIPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQ------------------RSAA 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E + +++ TG + + T + R+TDHR
Sbjct: 282 H-------------------------ESRAADRKSQVGTGDRSERIRTYNFPQGRVTDHR 316
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + M+G
Sbjct: 317 INLTLYKIERIMAG 330
>gi|406592540|ref|YP_006739720.1| peptide chain release factor 1 [Chlamydia psittaci CP3]
gi|406593602|ref|YP_006740781.1| peptide chain release factor 1 [Chlamydia psittaci NJ1]
gi|406594016|ref|YP_006741823.1| peptide chain release factor 1 [Chlamydia psittaci MN]
gi|407460848|ref|YP_006738623.1| peptide chain release factor 1 [Chlamydia psittaci WC]
gi|410858601|ref|YP_006974541.1| peptide chain release factor 1 [Chlamydia psittaci 01DC12]
gi|449071301|ref|YP_007438381.1| peptide chain release factor 1 [Chlamydophila psittaci Mat116]
gi|405782448|gb|AFS21196.1| peptide chain release factor 1 [Chlamydia psittaci MN]
gi|405787045|gb|AFS25789.1| peptide chain release factor 1 [Chlamydia psittaci WC]
gi|405788412|gb|AFS27155.1| peptide chain release factor 1 [Chlamydia psittaci CP3]
gi|405789474|gb|AFS28216.1| peptide chain release factor 1 [Chlamydia psittaci NJ1]
gi|410811496|emb|CCO02149.1| peptide chain release factor 1 [Chlamydia psittaci 01DC12]
gi|449039809|gb|AGE75233.1| peptide chain release factor 1 [Chlamydophila psittaci Mat116]
Length = 361
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 116/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + +
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRR---------------- 286
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
H+ S A R + +G + + T + S +R+TD
Sbjct: 287 --HKEAS---AMR----------------------SAQVGSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+Y++ + M G L + S + H Y
Sbjct: 320 HRIGLTLYSLDKVMEGD--LDTITSALVSHAY 349
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|385808994|ref|YP_005845390.1| protein chain release factor A [Ignavibacterium album JCM 16511]
gi|383801042|gb|AFH48122.1| Protein chain release factor A [Ignavibacterium album JCM 16511]
Length = 359
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 115/209 (55%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS SVAVLP+ +D+EV ++ DLK++ R+ GAGGQ+VN ++AV
Sbjct: 185 VQRVPETEASGRVHTSAASVAVLPEVEDVEVEINPNDLKIDIFRSGGAGGQNVNKVETAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V+ Q++RSQ+KNR A+ LK +Y+++ +Q
Sbjct: 245 RITHLPTGIVVQCQDERSQLKNRQKAMKVLKARLYDMEMRKQ------------------ 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+E+ + +++ +G + + T + +R+TDHR
Sbjct: 287 -------------------------MEQISAQRKSQVRSGDRSEKIRTYNFPQNRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+YN++ M G L LI ++ D
Sbjct: 322 IGLTLYNLSNIMEG--QLDNLIEQLKLAD 348
>gi|332295519|ref|YP_004437442.1| peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
gi|332178622|gb|AEE14311.1| Peptide chain release factor 1 [Thermodesulfobium narugense DSM
14796]
Length = 361
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 48/196 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +I++ +DEKDLK++T RA GAGGQHVN TDSAV
Sbjct: 187 VQRVPETESGGRIHTSTATVAVLPEADEIDITIDEKDLKIDTFRAGGAGGQHVNKTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ +N+ A+ L I E KR A
Sbjct: 247 RITHLPTGIVVACQDERSQFQNKEKAMRILAAKILE---------------EKRVA---- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
EK++ + + G+G + + T + R+TD
Sbjct: 288 --------------------------SEKEIAMSRRIQVGSGDRSEKIRTYNFPQGRVTD 321
Query: 178 HRIQRTVYNVAEFMSG 193
HRI T+Y + E + G
Sbjct: 322 HRINLTLYRLNEVLDG 337
>gi|384228183|ref|YP_005619918.1| peptide chain release factor 1 [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539116|gb|AEO07983.1| peptide chain release factor 1 [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 361
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 114/213 (53%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTST +VAV+P PK + ++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPETESQGRIHTSTCTVAVMPVIPKAEKEEINSADLKIDTFRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEE--QENRWVVRLVTKRSAR 117
+R+THIPTG VE Q++RSQ KN+A AL+ L IY + E+ QEN + +++ R
Sbjct: 244 IRITHIPTGQVVECQDERSQHKNKAKALSILSARIYAAKLEKTHQENSSIRKILLGSGDR 303
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITD 177
+ +RT P +RITD
Sbjct: 304 SDRNRT-----------YNFPQ---------------------------------NRITD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HRI T+Y + E + G L LI I Q +YQ
Sbjct: 320 HRINLTIYKLDEVLQGK--LDFLIDPISQ-EYQ 349
>gi|255083621|ref|XP_002508385.1| predicted protein [Micromonas sp. RCC299]
gi|226523662|gb|ACO69643.1| predicted protein [Micromonas sp. RCC299]
Length = 366
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST SVAVLPQ + +E+ + + DLK++T RA+GAGGQHVNTT+SAV
Sbjct: 188 VQRVPATETQGRVHTSTASVAVLPQAETVELDIRDDDLKIDTMRASGAGGQHVNTTNSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG++V Q++RSQ KN+ A+ L+ +YE++
Sbjct: 248 RITHVPTGVTVVMQDERSQHKNKEKAMKVLRARVYELE 285
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + + DLK++T RA+GAGGQHVNTT+SA RIT
Sbjct: 218 LDIRDDDLKIDTMRASGAGGQHVNTTNSAVRIT 250
>gi|358635920|dbj|BAL23217.1| peptide chain release factor 1 [Azoarcus sp. KH32C]
Length = 359
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 83/106 (78%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ +IE V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPTTETQGRIHTSACTVAVMPEADEIEAVNINPADLRIDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ +NRA A++ L I+++Q EQ+ +
Sbjct: 244 VRITHLPTGIVVECQDDRSQHRNRAQAMSVLAARIHDMQLREQQAK 289
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 143 AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
AV++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 214 AVNINPADLRIDTFRASGAGGQHINKTDSAVRIT 247
>gi|270132345|ref|NP_666072.3| peptide chain release factor 1, mitochondrial [Mus musculus]
gi|27151667|sp|Q8K126.1|RF1M_MOUSE RecName: Full=Peptide chain release factor 1, mitochondrial;
Short=MRF-1; Short=MtRF-1; Flags: Precursor
gi|20810364|gb|AAH28898.1| Mitochondrial translational release factor 1 [Mus musculus]
gi|26336078|dbj|BAC31724.1| unnamed protein product [Mus musculus]
gi|148703819|gb|EDL35766.1| mitochondrial translational release factor 1, isoform CRA_a [Mus
musculus]
Length = 446
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 113/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+V+T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQ+KN+ AL L+ +Y+ E+ +++AR
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDR-------CQQQNAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ G L +LI + Q
Sbjct: 398 DHRIAYEVRDIKEFLRGEKCLDQLIERLLQ 427
>gi|338986692|ref|ZP_08633672.1| PrfA [Acidiphilium sp. PM]
gi|338206380|gb|EGO94536.1| PrfA [Acidiphilium sp. PM]
Length = 352
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR P TE GR+HTSTV+VAVLP+ +D++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRAPATETQGRIHTSTVTVAVLPEAEDVDVEVNEADLRIDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V QE+RSQ KNRA A+ L+ +YE
Sbjct: 239 RITHLPTGIVVAMQEERSQHKNRAKAMKILRARLYE 274
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VEVNEADLRIDVFRASGAGGQHVNKTESAVRIT 241
>gi|302829783|ref|XP_002946458.1| hypothetical protein VOLCADRAFT_103042 [Volvox carteri f.
nagariensis]
gi|300268204|gb|EFJ52385.1| hypothetical protein VOLCADRAFT_103042 [Volvox carteri f.
nagariensis]
Length = 400
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 80/102 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+V VLPQ +++V L ++DL++ET RA+GAGGQHVN TDSAV
Sbjct: 208 VQRVPVTEAQGRVHTSTVAVVVLPQADEVDVKLRDEDLRIETMRASGAGGQHVNVTDSAV 267
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTG+ V Q +RSQ NRA AL L+ +Y+++ +++
Sbjct: 268 RITHVPTGLVVSCQNERSQHLNRAAALKILRARLYDLEMQKR 309
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L ++DL++ET RA+GAGGQHVN TDSA RIT
Sbjct: 238 VKLRDEDLRIETMRASGAGGQHVNVTDSAVRIT 270
>gi|268678716|ref|YP_003303147.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
gi|268616747|gb|ACZ11112.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM
6946]
Length = 355
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 114/213 (53%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS V+VAV+P+ D+EV + EKDLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPLTESQGRVHTSAVTVAVMPEVDDVEVDIQEKDLKIDVMRSSGNGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V +Q+ +SQ KN+ A+ LK +Y++Q +E R + AR
Sbjct: 241 RITHLPTGIVVVNQDGKSQHKNKDAAMKILKAKLYDMQMQE-------RNAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQ--HVNTTDSA-DRITD 177
K+ G+G + + T + +RITD
Sbjct: 291 -----------------------------------KQQVGSGDRSARIRTYNYPQNRITD 315
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HR+ T+Y + M GG + ELI I H YQ
Sbjct: 316 HRVGLTLYRLDAIMEGG-LYDELIDPIITH-YQ 346
>gi|226323866|ref|ZP_03799384.1| hypothetical protein COPCOM_01641 [Coprococcus comes ATCC 27758]
gi|225207415|gb|EEG89769.1| peptide chain release factor 1 [Coprococcus comes ATCC 27758]
Length = 358
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 82/102 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQ 284
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|153854177|ref|ZP_01995485.1| hypothetical protein DORLON_01476 [Dorea longicatena DSM 13814]
gi|149753226|gb|EDM63157.1| peptide chain release factor 1 [Dorea longicatena DSM 13814]
Length = 358
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 109/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ +D+++ +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEDVDIQIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A A L+ +Y+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKDKAFALLRAKLYDLE---------------------- 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
C H E + + +++ TG + + T + R+TDHR
Sbjct: 281 --------------------CQKRHDAEAEAR-KSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + + M+G
Sbjct: 320 IGLTLYKLDKIMNG 333
>gi|163793919|ref|ZP_02187893.1| Protein chain release factor A [alpha proteobacterium BAL199]
gi|159181030|gb|EDP65547.1| Protein chain release factor A [alpha proteobacterium BAL199]
Length = 356
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 116/216 (53%), Gaps = 43/216 (19%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V +D+KDL+++ R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPATESQGRIHTSAATVAVLPEAEEVDVAIDDKDLRIDVYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KNRA A+ L+ +++ +E+ R R ++S
Sbjct: 243 RITHLPTGVVVTQQDEKSQHKNRAKAMKILRARLFD---QERTRRDSERAADRKSQIGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+Y + + MSG A L E++ + D R+ L
Sbjct: 321 NLTLYKIDKVMSGEA-LDEIVDALIAEDEAERLATL 355
>gi|206901386|ref|YP_002250520.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
gi|226739102|sp|B5YDB2.1|RF1_DICT6 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|206740489|gb|ACI19547.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12]
Length = 367
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 81/104 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ ++++V +D KDL++ET R+ GAGGQHVN T+S V
Sbjct: 188 VQRVPITESSGRIHTSTATVAVLPEMEEVDVEIDPKDLRIETFRSGGAGGQHVNKTESGV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+THIP+GI V+ Q++RSQ +NR A+ L+ +YE E+EN
Sbjct: 248 RITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKEN 291
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDL++ET R+ GAGGQHVN T+S RIT
Sbjct: 218 VEIDPKDLRIETFRSGGAGGQHVNKTESGVRIT 250
>gi|409399752|ref|ZP_11249997.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
gi|409131125|gb|EKN00843.1| peptide chain release factor 1 [Acidocella sp. MX-AZ02]
Length = 353
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAV+P+ ++++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 181 VQRVPTTETQGRIHTSTITVAVMPEAEEVDVDINEADLRIDVYRASGAGGQHVNKTESAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V QE+RSQ KNRA A+ L+ IYE Q
Sbjct: 241 RITHIPTGTVVAMQEERSQHKNRAKAMKILRSRIYEQQ 278
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 211 VDINEADLRIDVYRASGAGGQHVNKTESAVRIT 243
>gi|253681032|ref|ZP_04861835.1| peptide chain release factor 1 [Clostridium botulinum D str. 1873]
gi|253562881|gb|EES92327.1| peptide chain release factor 1 [Clostridium botulinum D str. 1873]
Length = 357
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +D D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI V Q+++SQ+KN+ AL LK +YE
Sbjct: 243 RMTHIPTGIVVSCQDEKSQLKNKEKALKVLKARLYE 278
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++V+ RA+G GGQ VNTTDSA R+T
Sbjct: 213 IQIDPNDIRVDVFRASGHGGQCVNTTDSAVRMT 245
>gi|302830560|ref|XP_002946846.1| hypothetical protein VOLCADRAFT_103257 [Volvox carteri f.
nagariensis]
gi|300267890|gb|EFJ52072.1| hypothetical protein VOLCADRAFT_103257 [Volvox carteri f.
nagariensis]
Length = 361
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 80/102 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+V VLPQ +++V L ++DL++ET RA+GAGGQHVN TDSAV
Sbjct: 168 VQRVPVTEAQGRVHTSTVAVVVLPQADEVDVKLRDEDLRIETMRASGAGGQHVNVTDSAV 227
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTG+ V Q +RSQ NRA AL L+ +Y+++ +++
Sbjct: 228 RITHVPTGLVVSCQNERSQHLNRAAALKILRARLYDLEMQKR 269
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L ++DL++ET RA+GAGGQHVN TDSA RIT
Sbjct: 198 VKLRDEDLRIETMRASGAGGQHVNVTDSAVRIT 230
>gi|358067998|ref|ZP_09154470.1| peptide chain release factor 1 [Johnsonella ignava ATCC 51276]
gi|356693967|gb|EHI55636.1| peptide chain release factor 1 [Johnsonella ignava ATCC 51276]
Length = 357
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 82/103 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++VH+D D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTASVAVMPEAEEVDVHIDMNDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH P+GI + SQ ++SQ++N+ A A L+ +YE++ E+++
Sbjct: 243 RLTHYPSGIVIYSQTEKSQLQNKEKAFALLRSKLYELELEKKQ 285
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
VH++ D++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VHIDMNDIRIDVMRASGNGGQCVNTTDSAVRLTHYPSGIVIYSQTE 258
>gi|259503694|ref|ZP_05746596.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
gi|259168326|gb|EEW52821.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041]
Length = 362
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ ++++N +
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQNAY-------------- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
D K + TG + + T + +R+TDHR
Sbjct: 294 -----------------------------DKKRKNAIGTGDRSERIRTYNYPQNRVTDHR 324
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+ + + MSG L E+I + D +++QL
Sbjct: 325 IGLTLNKLDKIMSGE--LDEIIEALIVADQTEKLEQL 359
>gi|73989054|ref|XP_848713.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 2
[Canis lupus familiaris]
Length = 444
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 111/205 (54%), Gaps = 47/205 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 259 VQRIPEVGLSARMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 318
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E
Sbjct: 319 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIE----------------- 361
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
++ C + + L+V T+ A + + T + + DR+T
Sbjct: 362 -------------KDKCQQQST---------RKLQVGTR----AQSERIRTYNFTQDRVT 395
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELI 201
DHRI V + EF+ G L +LI
Sbjct: 396 DHRIAYEVRGIKEFLCGEKCLDQLI 420
>gi|381166791|ref|ZP_09876005.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
gi|380684364|emb|CCG40817.1| peptide chain release factor 1 [Phaeospirillum molischianum DSM
120]
Length = 358
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +++++ +DEKDL+V+ R+ G+GGQ VNTTDSAV
Sbjct: 185 VQRVPATEASGRIHTSAATVAVLPEAEEVDIQIDEKDLRVDVYRSQGSGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG++V Q+++SQ KN+A A+ L+ +YE Q
Sbjct: 245 RVTHIPTGLAVACQQEKSQHKNKATAMTLLRSRLYERQ 282
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 2 QRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
+R+P E++ V ++ PKD DEK+ +E + TG G + R
Sbjct: 88 ERLPDLERA---------VQIMLLPKD---EADEKNAILEVRAGTG-GDEAALFAAELFR 134
Query: 62 MTHIPTGISVESQE----DRSQIKNRANALAKL--KRLIYEIQFEEQENRWVVRLVTKRS 115
M +G+ E + + I A AK+ + + ++FE +R V+ V
Sbjct: 135 MYERYSGLKGWRFEVLDANDTGIGGVREASAKITGRGVFARLKFESGAHR--VQRVPATE 192
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADR 174
A IH + + + LP + + ++EKDL+V+ R+ G+GGQ VNTTDSA R
Sbjct: 193 ASGRIHTSAATV-------AVLPEAEEVDIQIDEKDLRVDVYRSQGSGGQSVNTTDSAVR 245
Query: 175 IT 176
+T
Sbjct: 246 VT 247
>gi|357973917|ref|ZP_09137888.1| peptide chain release factor 1 [Sphingomonas sp. KC8]
Length = 361
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 119/219 (54%), Gaps = 49/219 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V +D+KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPATESGGRIHTSAATVAVLPEAEDVDVQIDDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V Q+++SQ KN+A AL L+ +YE +E+E RL + R+
Sbjct: 246 RITHLPSGLVVIQQDEKSQHKNKAKALKVLRTRLYE---QERE-----RLASARAG---- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 294 ---------------------------------ERKAMVGSGDRSERIRTYNFPQGRVTD 320
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
HRI T++ ++E + G L EL+S + D R+ L
Sbjct: 321 HRINLTLHRLSEILEGPG-LDELVSALIAEDEAARLANL 358
>gi|409427036|ref|ZP_11261567.1| peptide chain release factor 1 [Pseudomonas sp. HYS]
Length = 360
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T RA+GAGGQH+N TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQHINKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + +IQ +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDIQTSAAQNA-------------- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSAD-RIT 176
+ E K G+G + + T + R+T
Sbjct: 292 -------------------------------MASERKLLVGSGDRSERIRTYNYPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLDDVLAGGVDAVIEPLLA-------EYQADQL 355
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 176 KLKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQV-----AIEINPADLRVDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
RA+GAGGQH+N TDSA RIT
Sbjct: 229 YRASGAGGQHINKTDSAIRIT 249
>gi|317121004|ref|YP_004101007.1| peptide chain release factor 1 (bRF-1) [Thermaerobacter marianensis
DSM 12885]
gi|315590984|gb|ADU50280.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter
marianensis DSM 12885]
Length = 381
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +VAVLP+ +++EV +D DL+++T A+G GGQHVN T+SAV
Sbjct: 208 VQRVPVTEAAGRIHTSTATVAVLPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAV 267
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V Q++RSQ KNRA A+ L+ + + Q+
Sbjct: 268 RITHKPTGIVVTCQDERSQHKNRARAMKILRARLLDYYTRRQQ----------------- 310
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE + ++ TG + + T + +R+TDHR
Sbjct: 311 --------------------------EELSQQRRSQVGTGERSEKIRTYNFRENRVTDHR 344
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T+Y + E M G L EL+ + HD Q R+ + +S
Sbjct: 345 IGLTLYRLQEIMDGD--LDELLDALAAHDEQVRLGEAVS 381
>gi|387827112|ref|YP_005806394.1| peptide chain release factor 1 [Borrelia burgdorferi N40]
gi|312148979|gb|ADQ29050.1| peptide chain release factor 1 [Borrelia burgdorferi N40]
Length = 357
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQYKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|291541665|emb|CBL14775.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus
bromii L2-63]
Length = 357
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 48/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ +D DLK++T R++GAGGQH+N T SA+
Sbjct: 183 VQRVPETESQGRVHTSTTTVAVLPEAEDVELEIDPNDLKIDTFRSSGAGGQHINKTSSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSARTI 119
R+TH+PTG+ VE Q++RSQ KN+ AL LK RL+ +E++++ + R +
Sbjct: 243 RITHLPTGMVVECQDERSQYKNKDKALKVLKSRLL-----KEKQDKQASEIAENRKMQV- 296
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
TG + + T + R+TDH
Sbjct: 297 --------------------------------------GTGDRSERIRTYNYPQGRVTDH 318
Query: 179 RIQRTVYNVAEFMSGGAMLHELI 201
RI T+Y + E ++G L E+I
Sbjct: 319 RIGLTLYKLEEILNGS--LDEVI 339
>gi|389873756|ref|YP_006381175.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
gi|388539005|gb|AFK64193.1| peptide chain release factor 1 [Advenella kashmirensis WT001]
Length = 361
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 111/207 (53%), Gaps = 51/207 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+ +I EV L+ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPETESQGRVHTSACTVAVLPEADEIAEVALNPADLRIDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI E Q+DRSQ KN+A A++ L I +I+ ++Q+ +
Sbjct: 244 VRITHIPTGIVAECQDDRSQHKNKARAMSVLAARINDIERQKQQQKEAA----------- 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E K L TG + + T + R+TDH
Sbjct: 293 ---------------------------ERKSLV-----GTGDRSERIRTYNYPQGRVTDH 320
Query: 179 RIQRTVYNVAEFMSG------GAMLHE 199
RI T+Y +A+ M G GA++ E
Sbjct: 321 RINLTLYKLAQIMEGSLDELTGALIAE 347
>gi|342215176|ref|ZP_08707835.1| peptide chain release factor 1 [Veillonella sp. oral taxon 780 str.
F0422]
gi|341589404|gb|EGS32684.1| peptide chain release factor 1 [Veillonella sp. oral taxon 780 str.
F0422]
Length = 360
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 77/91 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTSTV+VAVLP+ +DI++ ++EKDL+++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPDTESSGRIHTSTVTVAVLPEAEDIDIEINEKDLEIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH P+GI V Q++RSQ+KNR A+ L+
Sbjct: 245 RITHKPSGIVVACQDERSQLKNREKAMRVLR 275
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDL+++T RA+GAGGQH+N T+SA RIT
Sbjct: 215 IEINEKDLEIDTYRASGAGGQHINKTESAVRIT 247
>gi|269837927|ref|YP_003320155.1| peptide chain release factor 1 [Sphaerobacter thermophilus DSM
20745]
gi|269787190|gb|ACZ39333.1| peptide chain release factor 1 [Sphaerobacter thermophilus DSM
20745]
Length = 361
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 122/214 (57%), Gaps = 46/214 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +++++ ++E+DL+++ R+TG GGQ VNTTDSAV
Sbjct: 185 VQRVPVTESGGRIHTSTATVAVLPEAEEVDIQINEEDLRIDVFRSTGHGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQIKNRA A+A L+ +Y++ E R RL +RS +
Sbjct: 245 RITHLPTGLVVTCQDEKSQIKNRAKAMAVLRARLYDL-----EQR---RLHEERSG---M 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + DR+TDHR
Sbjct: 294 RRSQV--------------------------------GTGERAEKIRTYNFPQDRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
++ ++ N+ E ++G + I ++R D R+
Sbjct: 322 LKLSLGNLPEILNG--EIDTFIRELRAADQAERL 353
>gi|416348416|ref|ZP_11680318.1| peptide chain release factor 1 [Clostridium botulinum C str.
Stockholm]
gi|338196850|gb|EGO89028.1| peptide chain release factor 1 [Clostridium botulinum C str.
Stockholm]
Length = 350
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 75/96 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +D D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI V Q+++SQ+KN+ AL LK +YE
Sbjct: 243 RMTHIPTGIVVSCQDEKSQLKNKEKALKVLKARLYE 278
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++V+ RA+G GGQ VNTTDSA R+T
Sbjct: 213 IQIDPNDIRVDVFRASGHGGQCVNTTDSAVRMT 245
>gi|327267784|ref|XP_003218679.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Anolis carolinensis]
Length = 443
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 113/208 (54%), Gaps = 47/208 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+T S R+ HT T+SV VLPQ ++I + +D KDL+++T RA GAGGQHVNTTD
Sbjct: 255 VQRIPETGLSSRMQRIHTGTMSVIVLPQLEEINIKVDPKDLRIDTFRAKGAGGQHVNTTD 314
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTGI+VE Q++RSQ NR A+ LK +Y+ E + L K+SAR
Sbjct: 315 SAVRIVHIPTGITVECQQERSQQVNREKAMQALKDKLYQQAIERE-------LSQKQSAR 367
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T + + + T + + DR++
Sbjct: 368 KM------------------------------------QLGTRSQSERIRTYNFNQDRVS 391
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDI 204
DHRI V ++ +SG +L ELI+ +
Sbjct: 392 DHRISYEVRDIKGILSGKGVLDELINKL 419
>gi|349604376|gb|AEP99945.1| Peptide chain release factor 1, mitochondrial-like protein, partial
[Equus caballus]
Length = 365
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 116/210 (55%), Gaps = 48/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP D +V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 181 VQRIPEVGLSSRMQRIHTGTMSVIVLPQP-DEDVKVDPKDLRIDTFRAKGAGGQHVNTTD 239
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E++ R ++SAR
Sbjct: 240 SAVRLVHVPTGLVVECQQERSQIKNKETALRVLRARLYQ-QIIEKDKR------QQQSAR 292
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
L+V T+ A + + T + + DR+T
Sbjct: 293 K--------------------------------LQVGTR----AQSERIRTYNFTQDRVT 316
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V N+ EF+ G L LI + Q
Sbjct: 317 DHRIAYEVRNIKEFLHGEKCLDHLIQRLLQ 346
>gi|222100202|ref|YP_002534770.1| peptide chain release factor 1 [Thermotoga neapolitana DSM 4359]
gi|221572592|gb|ACM23404.1| Peptide chain release factor 1 [Thermotoga neapolitana DSM 4359]
Length = 349
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +V VLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 168 VQRVPITESGGRIHTSTATVVVLPEIEERDIEIRPEDLKIETFRASGHGGQYVNKTESAV 227
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q +RSQ +N+ AL L+ +Y++Q E+ E L KR ++
Sbjct: 228 RITHIPTGIVVSCQNERSQYQNKQTALRILRARLYQLQREQLEK----ELSQKRKSQI-- 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 282 -------------------------------------GTGERSEKIRTYNFPQNRVTDHR 304
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T Y + E + G L E+I+ + +HD + I+++L
Sbjct: 305 INYTSYRLQEILDGD--LDEIIAKLIEHDIENNIEEILG 341
>gi|410947465|ref|XP_003980467.1| PREDICTED: peptide chain release factor 1, mitochondrial [Felis
catus]
Length = 446
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 114/205 (55%), Gaps = 47/205 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKIDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ +L+ K
Sbjct: 321 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQ------------QLIEK---- 364
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ C + + L+V T+ A + + T + + DR+T
Sbjct: 365 --------------DKCQQQST---------RKLQVGTR----AQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELI 201
DHRI V ++ EF+ G L +LI
Sbjct: 398 DHRIAYEVRDIKEFLCGEKHLDQLI 422
>gi|393769853|ref|ZP_10358370.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
gi|392724675|gb|EIZ82023.1| peptide chain release factor 1 [Methylobacterium sp. GXF4]
Length = 361
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++ +++ DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPNTETQGRIHTSAATVAVLPEAEEVDIVVNDADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V QE+RSQ KNRA A+A L+ +Y+ + K SAR
Sbjct: 246 RITHLPTGIVVFVQEERSQHKNRARAMALLRARLYDAE-----------RTAKDSARAAD 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R + +G + + T + R+TDHR
Sbjct: 295 RRAQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGTAL 339
>gi|343127515|ref|YP_004777446.1| peptide chain release factor 1 [Borrelia bissettii DN127]
gi|342222203|gb|AEL18381.1| peptide chain release factor 1 [Borrelia bissettii DN127]
Length = 357
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE SGRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESSGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESSGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|183222627|ref|YP_001840623.1| peptide chain release factor 1 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189912661|ref|YP_001964216.1| peptide chain release factor 1 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|238687790|sp|B0SH84.1|RF1_LEPBA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238687821|sp|B0SQV0.1|RF1_LEPBP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|167777337|gb|ABZ95638.1| Peptide chain release factor 1 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167781049|gb|ABZ99347.1| Peptide chain release factor 1 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 353
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 75/91 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS V+VA+LP+ ++ EV + E DL+++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRIPETESGGRIHTSAVTVAILPEAEEKEVEIKESDLRIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+THIPTGI V SQE+RSQIKNR A+ L+
Sbjct: 240 RITHIPTGIVVASQEERSQIKNRDKAMRVLR 270
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++E DL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 210 VEIKESDLRIDVYRSSGAGGQHVNTTDSAVRIT 242
>gi|257439051|ref|ZP_05614806.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
gi|257198541|gb|EEU96825.1| peptide chain release factor 1 [Faecalibacterium prausnitzii
A2-165]
Length = 356
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 48/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+PQ +++++ +D KDL+++T R++GAGGQH+N T SA+
Sbjct: 180 VQRVPETETQGRIHTSTATVAVMPQAEEVDLVIDPKDLRIDTFRSSGAGGQHINKTSSAI 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSARTI 119
R+THIPTG+ VE Q +RSQ +N+ AL L+ RL+ + Q E+Q+ + R+ +
Sbjct: 240 RVTHIPTGMVVECQNERSQFQNKDKALEVLRSRLLAQKQKEQQD-----AINANRAGQV- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
TG + + T + DR TDH
Sbjct: 294 --------------------------------------GTGDRSEKIRTYNFPQDRCTDH 315
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
RI TV+N+ + M G L E+I + H+ ++ QL
Sbjct: 316 RIGLTVHNLDKIMDGN--LDEIIDALATHEQAEKLRQL 351
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 8 EKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIP 66
EKS + ++ +L PKD+ D+K + +E + GAGG+ S +RM
Sbjct: 80 EKSQEVAQLENNLKILLLPKDVN---DDKSVIMELR--GGAGGEEAALFAHSLMRMY--- 131
Query: 67 TGISVESQEDRSQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTES 125
+ V+S+ ++ N L +K I + NR R R T+
Sbjct: 132 -TMYVQSRGWELEVLNLNETELGGVKEAILAVNGAGAYNRLKYESGVHRVQRVPETETQG 190
Query: 126 PIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
I +P + + ++ KDL+++T R++GAGGQH+N T SA R+T
Sbjct: 191 RIHTSTATVAVMPQAEEVDLVIDPKDLRIDTFRSSGAGGQHINKTSSAIRVT 242
>gi|348027434|ref|YP_004767239.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
gi|341823488|emb|CCC74412.1| peptide chain release factor 1 [Megasphaera elsdenii DSM 20460]
Length = 362
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 79/99 (79%), Gaps = 1/99 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +D+E+ L+ D++V+ RA+GAGGQHVN T SAV
Sbjct: 188 VQRVPVTEAGGRIHTSTATVAVLPEAEDVEIDLNMDDVRVDYFRASGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQ 98
RMTHIPTG+ VE Q++RSQ++NRA AL LK RL+ + Q
Sbjct: 248 RMTHIPTGMVVECQDERSQLENRAKALRVLKARLLDQAQ 286
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L D++V+ RA+GAGGQHVN T SA R+T
Sbjct: 218 IDLNMDDVRVDYFRASGAGGQHVNKTSSAVRMT 250
>gi|148555445|ref|YP_001263027.1| peptide chain release factor 1 [Sphingomonas wittichii RW1]
gi|166223608|sp|A5V9C3.1|RF1_SPHWW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148500635|gb|ABQ68889.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingomonas
wittichii RW1]
Length = 360
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 49/219 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++VH+D+KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPVTESGGRIHTSAATVAVLPEAEEVDVHIDDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +YE++ E RL ++R+
Sbjct: 246 RITHLPTGLVVIQQDEKSQHKNKAKALKVLRTRLYEMERE--------RLASERAG---- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K G+G + + T + R+TD
Sbjct: 294 ---------------------------------ARKSMVGSGDRSERIRTYNFPQGRVTD 320
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
HRI T++ ++E + G L +L+ + D R+ QL
Sbjct: 321 HRINLTLHRLSEILEGPG-LDDLVGALIAEDEAERLAQL 358
>gi|297183483|gb|ADI19614.1| protein chain release factor a [uncultured SAR11 cluster bacterium
HF0770_37D02]
Length = 358
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 49/219 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTS +VAVLP+ +++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPKTETQGRVHTSAATVAVLPEAEEVDIKINEKDLRIDVFRSSGPGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V Q+++SQ KNRA A+ L+ +YE + E++
Sbjct: 244 RITHLPSGVVVSQQDEKSQHKNRAKAMKILRSRVYENEREKK------------------ 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+K+ + K G+G + + T + R+TD
Sbjct: 286 ---------------------------DKERSRDRKNQIGSGDRSERIRTYNFPQGRVTD 318
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
HRI T++ + EF++G A EL ++R D + ++ L
Sbjct: 319 HRINLTLHKLEEFLNGVA-FEELSQNLRMRDQETKLANL 356
>gi|75674575|ref|YP_316996.1| peptide chain release factor 1 [Nitrobacter winogradskyi Nb-255]
gi|119361570|sp|Q3SVP7.1|RF1_NITWN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|74419445|gb|ABA03644.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
winogradskyi Nb-255]
Length = 358
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPDTEAQGRVHTSAATVAVLPEAEEVDVDIRPDDLRIETMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 243 RITHIPTGIVVSMQDSRSQHKNRASAMNILRSRIYDAERQ--------RINAARSA---- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ KD + +G + + T + R+TDHR
Sbjct: 291 --------------------------DRKD-----QVGSGDRSERIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + ++G A LHELI
Sbjct: 320 INLTLYKLPQVIAGDA-LHELI 340
>gi|420463061|ref|ZP_14961839.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
gi|393080589|gb|EJB81314.1| peptide chain release factor 1 [Helicobacter pylori Hp H-4]
Length = 352
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|47558934|gb|AAT35567.1| protein release factor 1 [Chlamydia trachomatis]
Length = 359
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK--DIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V+VAVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIP+G+ V Q++RSQ KN+A A+ LK I E+Q QE + RSA
Sbjct: 243 AVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIALTLYNLDRVMEG 335
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
RL ++ + P P D DL V + G GG VRM H+
Sbjct: 90 RLSKQLENLLIPPDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSASESDLGGYKEYVMGISGASVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTVAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|366163504|ref|ZP_09463259.1| peptide chain release factor 1 [Acetivibrio cellulolyticus CD2]
Length = 360
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 82/102 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE +GR+HTSTV+VAVLP+ ++++V ++ DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRIPETEANGRIHTSTVTVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTG+ V Q+ RSQ KN+ A+ L+ +YEI E+Q
Sbjct: 243 RITHIPTGLVVCCQDQRSQYKNKDKAMRVLRSKLYEIAQEQQ 284
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 213 VDINPNDLRIDTYRASGAGGQHINKTDSAIRIT 245
>gi|256545370|ref|ZP_05472733.1| peptide chain release factor 1 [Anaerococcus vaginalis ATCC 51170]
gi|256398931|gb|EEU12545.1| peptide chain release factor 1 [Anaerococcus vaginalis ATCC 51170]
Length = 357
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ ++++ +D D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ L+ +YEI EEQ KR
Sbjct: 243 RLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRARLYEI--EEQ----------KRQKEISD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+R +++ TG + + T + RITDHR
Sbjct: 291 NR-------------------------------KSQVGTGDRSERIRTYNYPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGG--AMLHELISD 203
I +T+Y + +F+ G M+ LI++
Sbjct: 320 INKTIYQLDDFLDGNIEEMIESLITE 345
>gi|257791638|ref|YP_003182244.1| peptide chain release factor 1 [Eggerthella lenta DSM 2243]
gi|257475535|gb|ACV55855.1| peptide chain release factor 1 [Eggerthella lenta DSM 2243]
Length = 352
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ ++EV ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 180 VQRVPKTESQGRIHTSTATVAVLPEADEVEVEINENDLRIDVYRAGGPGGQCVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 240 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQ 282
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 210 VEINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 242
>gi|39933683|ref|NP_945959.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192289040|ref|YP_001989645.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
gi|61214634|sp|Q6NC66.1|RF1_RHOPA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229470355|sp|B3QCF6.1|RF1_RHOPT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|39647529|emb|CAE26050.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009]
gi|192282789|gb|ACE99169.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1]
Length = 361
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/202 (40%), Positives = 113/202 (55%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+ KV +G + + T + R+TDHR
Sbjct: 293 ---------------------------ERKAKV----GSGDRSERIRTYNFPQGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + ++G A L ELI
Sbjct: 322 INLTLYKLPQVIAGEA-LGELI 342
>gi|420483345|ref|ZP_14981975.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3]
gi|420513696|ref|ZP_15012169.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3b]
gi|393102570|gb|EJC03134.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3]
gi|393158159|gb|EJC58419.1| peptide chain release factor 1 [Helicobacter pylori Hp P-3b]
Length = 352
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384262086|ref|YP_005417272.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
gi|378403186|emb|CCG08302.1| Peptide chain release factor 1 [Rhodospirillum photometricum DSM
122]
Length = 354
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V +D+KDL+V+T R+ GAGGQHVNTTDSAV
Sbjct: 180 VQRVPVTEAGGRIHTSAATVAVLPEAEEVDVQIDDKDLRVDTYRSQGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+G+ V+ Q+++SQ KNRA A+ L+ +Y+
Sbjct: 240 RITHLPSGVVVQCQDEKSQHKNRAKAMRMLRAKLYD 275
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++KDL+V+T R+ GAGGQHVNTTDSA RIT
Sbjct: 210 VQIDDKDLRVDTYRSQGAGGQHVNTTDSAVRIT 242
>gi|404369826|ref|ZP_10975154.1| peptide chain release factor 1 [Clostridium sp. 7_2_43FAA]
gi|226914046|gb|EEH99247.1| peptide chain release factor 1 [Clostridium sp. 7_2_43FAA]
Length = 361
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTESSGRIHTSTATVAVLPEVDDVEIEINEKDLRIDVYRSSGNGGQCVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTG+ V Q+++SQ+KN+ A+ L+ +YE
Sbjct: 244 RITHIPTGVVVACQDEKSQLKNKEKAMKVLRSRLYE 279
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 214 IEINEKDLRIDVYRSSGNGGQCVNTTDSAVRIT 246
>gi|149185458|ref|ZP_01863774.1| protein chain release factor A [Erythrobacter sp. SD-21]
gi|148830678|gb|EDL49113.1| protein chain release factor A [Erythrobacter sp. SD-21]
Length = 355
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 77/100 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P +++V LD +LK++T RA+GAGGQHVNTTDSA+
Sbjct: 181 VQRVPETESGGRIHTSAATVAVLPEPDEVDVQLDPTELKIDTYRASGAGGQHVNTTDSAI 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE 100
R+TH+PTG V Q+ RSQ KN+ A+ L+ +Y+ Q E
Sbjct: 241 RITHLPTGTVVTCQDGRSQHKNKEKAMQVLRTRLYDAQRE 280
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 15/92 (16%)
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAV 144
N AKLK FE +R V+ V + + IH + + + EP V
Sbjct: 167 NVFAKLK-------FESGVHR--VQRVPETESGGRIHTSAATVAVLPEPDEV------DV 211
Query: 145 HLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
L+ +LK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 QLDPTELKIDTYRASGAGGQHVNTTDSAIRIT 243
>gi|109502759|ref|XP_001073018.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Rattus norvegicus]
gi|392353666|ref|XP_003751566.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Rattus norvegicus]
gi|149050030|gb|EDM02354.1| rCG37077, isoform CRA_b [Rattus norvegicus]
Length = 446
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 116/210 (55%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D +DL+V+T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPRDLRVDTFRARGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQ+KN+ AL L+ +Y+ E+ + +++AR
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDK-------CQQQNAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
L+V T+ A + + T + + DR+T
Sbjct: 374 K--------------------------------LQVGTR----AQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ EF+ G L +LI + Q
Sbjct: 398 DHRIAYEVRDIKEFLRGEKCLDQLIERLLQ 427
>gi|260663282|ref|ZP_05864173.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
gi|260552134|gb|EEX25186.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN]
Length = 362
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GR+HTST +V V+P+ +D++V LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDY-YQQQEQS--------------- 291
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
E D + + TG + + T + +R+TDHR
Sbjct: 292 ---------------------------EYDAQRKNAIGTGDRSERIRTYNYPQNRVTDHR 324
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+ + + M+G L E+I + D +++QL
Sbjct: 325 IGLTLNKLDKIMAGD--LEEIIESLIIADQAQKLEQL 359
>gi|227514467|ref|ZP_03944516.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|385812049|ref|YP_005848440.1| peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
gi|227087153|gb|EEI22465.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC
14931]
gi|299782948|gb|ADJ40946.1| Peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT
5716]
Length = 362
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GR+HTST +V V+P+ +D++V LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 188 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDY-YQQQEQS--------------- 291
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
E D + + TG + + T + +R+TDHR
Sbjct: 292 ---------------------------EYDAQRKNAIGTGDRSERIRTYNYPQNRVTDHR 324
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+ + + M+G L E+I + D +++QL
Sbjct: 325 IGLTLNKLDKIMAGD--LEEIIESLIIADQAQKLEQL 359
>gi|384887120|ref|YP_005761631.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
gi|261838950|gb|ACX98715.1| peptide chain release factor RF-1 [Helicobacter pylori 52]
Length = 352
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|104780100|ref|YP_606598.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
gi|166223588|sp|Q1IEX1.1|RF1_PSEE4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|95109087|emb|CAK13784.1| peptide chain release factor 1 [Pseudomonas entomophila L48]
Length = 360
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILAGGVDAVIEPLLA-------EYQADQL 355
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 176 KLKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQV-----AIEINPADLRVDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 229 YRASGAGGQHVNKTDSAIRIT 249
>gi|355705559|gb|AES02360.1| mitochondrial translational release factor 1 [Mustela putorius
furo]
Length = 198
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 47/205 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV +LPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 28 VQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 87
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ E
Sbjct: 88 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIE----------------- 130
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
++ C + + L+V T+ A + + T + + DR+T
Sbjct: 131 -------------KDKCQQQST---------RKLQVGTR----AQSERIRTYNFTQDRVT 164
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELI 201
DHRI V ++ EF+ G L +LI
Sbjct: 165 DHRIAYEVRDIKEFLCGEKCLDQLI 189
>gi|451941480|ref|YP_007462117.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900867|gb|AGF75329.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 359
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 51/208 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE SGR+HTS +VAVLP+ ++I++ + +DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDLRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA AL L+ +++I+ ++ E ++RSA
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAE--------SERSA---- 291
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K G+G + + T + RITD
Sbjct: 292 ---------------------------------SRKNQVGSGDRSERIRTYNFPQGRITD 318
Query: 178 HRIQRTVYNVAEFMSGGA--MLHELISD 203
HRI T+Y + + G ++H LISD
Sbjct: 319 HRINLTLYKLDRILEGDLDELIHALISD 346
>gi|331270451|ref|YP_004396943.1| peptide chain release factor 1 [Clostridium botulinum BKT015925]
gi|329127001|gb|AEB76946.1| peptide chain release factor 1 [Clostridium botulinum BKT015925]
Length = 357
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 75/96 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRIDVFRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI V Q+++SQ+KN+ AL LK +YE
Sbjct: 243 RMTHIPTGIVVSCQDEKSQLKNKEKALKVLKARLYE 278
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++++ RA+G GGQ VNTTDSA R+T
Sbjct: 213 IQIDPNDIRIDVFRASGHGGQCVNTTDSAVRMT 245
>gi|15604741|ref|NP_219525.1| peptide chain release factor 1 [Chlamydia trachomatis D/UW-3/CX]
gi|76788735|ref|YP_327821.1| peptide chain release factor 1 [Chlamydia trachomatis A/HAR-13]
gi|237804372|ref|YP_002888526.1| peptide chain release factor 1 [Chlamydia trachomatis B/TZ1A828/OT]
gi|255310824|ref|ZP_05353394.1| peptide chain release factor 1 [Chlamydia trachomatis 6276]
gi|255317124|ref|ZP_05358370.1| peptide chain release factor 1 [Chlamydia trachomatis 6276s]
gi|376282032|ref|YP_005155858.1| peptide chain release factor 1 [Chlamydia trachomatis A2497]
gi|385239534|ref|YP_005807376.1| peptide chain release factor 1 [Chlamydia trachomatis G/9768]
gi|385240455|ref|YP_005808296.1| peptide chain release factor 1 [Chlamydia trachomatis G/11222]
gi|385242310|ref|YP_005810149.1| peptide chain release factor 1 [Chlamydia trachomatis G/9301]
gi|385243231|ref|YP_005811077.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis D-EC]
gi|385244111|ref|YP_005811955.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis D-LC]
gi|385245920|ref|YP_005814742.1| peptide chain release factor 1 [Chlamydia trachomatis G/11074]
gi|385269668|ref|YP_005812828.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis A2497]
gi|7388050|sp|O84026.1|RF1_CHLTR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361522|sp|Q3KMZ9.1|RF1_CHLTA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|3328413|gb|AAC67613.1| Peptide Chain Releasing Factor (RF-1) [Chlamydia trachomatis
D/UW-3/CX]
gi|76167265|gb|AAX50273.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
A/HAR-13]
gi|231272672|emb|CAX09575.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
B/TZ1A828/OT]
gi|296435539|gb|ADH17713.1| peptide chain release factor 1 [Chlamydia trachomatis G/9768]
gi|296436463|gb|ADH18633.1| peptide chain release factor 1 [Chlamydia trachomatis G/11222]
gi|296437399|gb|ADH19560.1| peptide chain release factor 1 [Chlamydia trachomatis G/11074]
gi|297139898|gb|ADH96656.1| peptide chain release factor 1 [Chlamydia trachomatis G/9301]
gi|297748154|gb|ADI50700.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis D-EC]
gi|297749034|gb|ADI51712.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis D-LC]
gi|347974808|gb|AEP34829.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia
trachomatis A2497]
gi|371908062|emb|CAX08681.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
A2497]
gi|438689942|emb|CCP49199.1| peptide chain release factor 1 [Chlamydia trachomatis A/7249]
gi|438691026|emb|CCP48300.1| peptide chain release factor 1 [Chlamydia trachomatis A/5291]
gi|438692398|emb|CCP47400.1| peptide chain release factor 1 [Chlamydia trachomatis A/363]
gi|440524939|emb|CCP50190.1| peptide chain release factor 1 [Chlamydia trachomatis K/SotonK1]
gi|440527615|emb|CCP53099.1| peptide chain release factor 1 [Chlamydia trachomatis D/SotonD5]
gi|440528506|emb|CCP53990.1| peptide chain release factor 1 [Chlamydia trachomatis D/SotonD6]
gi|440532079|emb|CCP57589.1| peptide chain release factor 1 [Chlamydia trachomatis G/SotonG1]
gi|440532971|emb|CCP58481.1| peptide chain release factor 1 [Chlamydia trachomatis Ia/SotonIa1]
gi|440533865|emb|CCP59375.1| peptide chain release factor 1 [Chlamydia trachomatis Ia/SotonIa3]
Length = 359
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK--DIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V+VAVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIP+G+ V Q++RSQ KN+A A+ LK I E+Q QE + RSA
Sbjct: 243 AVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMEG 335
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
RL ++ + P P D DL V + G GG VRM H+
Sbjct: 90 RLSKQLENLLIPPDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSTSESDLGGYKEYVMGISGASVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTVAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|388547180|ref|ZP_10150448.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
gi|388274755|gb|EIK94349.1| peptide chain release factor 1 [Pseudomonas sp. M47T1]
Length = 360
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDERVAIEINPADLRVDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTG VE QE+RSQ KNRA A++ L + ++Q T +A I
Sbjct: 246 IRITHLPTGTVVECQEERSQHKNRARAMSWLSAKLNDMQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E+ L V +G + + T + R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E M+GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEVMAGGVDAVIEPLLA-------EYQADQL 355
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 177 LKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDERV-----AIEINPADLRVDTF 229
Query: 157 RATGAGGQHVNTTDSADRIT 176
R++GAGGQHVNTTDSA RIT
Sbjct: 230 RSSGAGGQHVNTTDSAIRIT 249
>gi|166154244|ref|YP_001654362.1| peptide chain release factor 1 [Chlamydia trachomatis 434/Bu]
gi|166155119|ref|YP_001653374.1| peptide chain release factor 1 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335493|ref|ZP_07223737.1| peptide chain release factor 1 [Chlamydia trachomatis L2tet1]
gi|339625668|ref|YP_004717147.1| peptide chain release factor 1 [Chlamydia trachomatis L2c]
gi|238687434|sp|B0B9D0.1|RF1_CHLT2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238687452|sp|B0BB09.1|RF1_CHLTB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|165930232|emb|CAP03717.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
434/Bu]
gi|165931107|emb|CAP06671.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|339460701|gb|AEJ77204.1| peptide chain release factor 1 [Chlamydia trachomatis L2c]
gi|440525831|emb|CCP51315.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/8200/07]
gi|440535655|emb|CCP61168.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/795]
gi|440536545|emb|CCP62059.1| peptide chain release factor 1 [Chlamydia trachomatis L1/440/LN]
gi|440537437|emb|CCP62951.1| peptide chain release factor 1 [Chlamydia trachomatis L1/1322/p2]
gi|440538327|emb|CCP63841.1| peptide chain release factor 1 [Chlamydia trachomatis L1/115]
gi|440539216|emb|CCP64730.1| peptide chain release factor 1 [Chlamydia trachomatis L1/224]
gi|440540106|emb|CCP65620.1| peptide chain release factor 1 [Chlamydia trachomatis L2/25667R]
gi|440540996|emb|CCP66510.1| peptide chain release factor 1 [Chlamydia trachomatis L3/404/LN]
gi|440541884|emb|CCP67398.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/UCH-2]
gi|440542774|emb|CCP68288.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Canada2]
gi|440543666|emb|CCP69180.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/LST]
gi|440544556|emb|CCP70070.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Ams1]
gi|440545446|emb|CCP70960.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/CV204]
gi|440913708|emb|CCP90125.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Ams2]
gi|440914598|emb|CCP91015.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Ams3]
gi|440915488|emb|CCP91905.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Canada1]
gi|440916383|emb|CCP92800.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Ams4]
gi|440917273|emb|CCP93690.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/Ams5]
Length = 359
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK--DIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V+VAVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIP+G+ V Q++RSQ KN+A A+ LK I E+Q QE + RSA
Sbjct: 243 AVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMEG 335
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
RL ++ + P P D DL V + G GG VRM H+
Sbjct: 90 RLSKQLENLLIPPDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSASESDLGGYKEYVMGISGASVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTVAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|317487895|ref|ZP_07946487.1| peptide chain release factor 1 [Eggerthella sp. 1_3_56FAA]
gi|325830623|ref|ZP_08164044.1| peptide chain release factor 1 [Eggerthella sp. HGA1]
gi|316913021|gb|EFV34538.1| peptide chain release factor 1 [Eggerthella sp. 1_3_56FAA]
gi|325487369|gb|EGC89811.1| peptide chain release factor 1 [Eggerthella sp. HGA1]
Length = 357
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ ++EV ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 185 VQRVPKTESQGRIHTSTATVAVLPEADEVEVEINENDLRIDVYRAGGPGGQCVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 245 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQ 287
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 215 VEINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 247
>gi|421527728|ref|ZP_15974305.1| peptide chain release factor 1 [Pseudomonas putida S11]
gi|402214810|gb|EJT86130.1| peptide chain release factor 1 [Pseudomonas putida S11]
Length = 792
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 108 VQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 167
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 168 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 212
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
A+ E K L R+ + + T + R+TDH
Sbjct: 213 -----------------------AIATERKLLVGSGDRS-----ERIRTYNYPQGRVTDH 244
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 245 RINLTLYSLDDILAGGVEAVIEPLLA-------EYQADQL 277
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++FE +R V+ V + ++ IH + + EP A+ + DL+V+T
Sbjct: 98 KLKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEP-----DEQAAIEINPADLRVDT 150
Query: 156 KRATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 151 YRASGAGGQHVNKTDSAIRIT 171
>gi|393774342|ref|ZP_10362707.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
gi|392720198|gb|EIZ77698.1| peptide chain release factor RF-1 [Novosphingobium sp. Rr 2-17]
Length = 356
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 80/104 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPTEVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PT + V Q++RSQ KN+A A+ L+ +YE +E +
Sbjct: 242 RITHLPTNLVVICQDERSQHKNKAKAMQVLRARLYEKMRDEAQG 285
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 169 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPTEV------DVQIEDKDLK 220
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 221 IDIYRASGAGGQHVNTTDSAVRIT 244
>gi|365840148|ref|ZP_09381354.1| peptide chain release factor 1 [Anaeroglobus geminatus F0357]
gi|364562411|gb|EHM40267.1| peptide chain release factor 1 [Anaeroglobus geminatus F0357]
Length = 361
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 78/95 (82%), Gaps = 1/95 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +D+EV L+ +D++V+ RA+GAGGQHVN T SAV
Sbjct: 185 VQRVPVTESGGRIHTSTATVAVLPEAEDVEVELNMEDVRVDYFRASGAGGQHVNKTSSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI 94
RMTHIP+GI VE Q++RSQ++NRA A+ LK RL+
Sbjct: 245 RMTHIPSGIVVECQDERSQLENRAKAVRVLKARLL 279
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +D++V+ RA+GAGGQHVN T SA R+T
Sbjct: 215 VELNMEDVRVDYFRASGAGGQHVNKTSSAVRMT 247
>gi|255348385|ref|ZP_05380392.1| peptide chain release factor 1 [Chlamydia trachomatis 70]
gi|255502926|ref|ZP_05381316.1| peptide chain release factor 1 [Chlamydia trachomatis 70s]
gi|255506595|ref|ZP_05382234.1| peptide chain release factor 1 [Chlamydia trachomatis D(s)2923]
gi|385241383|ref|YP_005809223.1| peptide chain release factor 1 [Chlamydia trachomatis E/11023]
gi|385244992|ref|YP_005813815.1| peptide chain release factor 1 [Chlamydia trachomatis E/150]
gi|386262380|ref|YP_005815659.1| peptide chain release factor 1 [Chlamydia trachomatis Sweden2]
gi|389857721|ref|YP_006359963.1| peptide chain release factor 1 [Chlamydia trachomatis F/SW4]
gi|389858594|ref|YP_006360835.1| peptide chain release factor 1 [Chlamydia trachomatis E/SW3]
gi|389859472|ref|YP_006361712.1| peptide chain release factor 1 [Chlamydia trachomatis F/SW5]
gi|289525068|emb|CBJ14538.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
Sweden2]
gi|296434608|gb|ADH16786.1| peptide chain release factor 1 [Chlamydia trachomatis E/150]
gi|296438326|gb|ADH20479.1| peptide chain release factor 1 [Chlamydia trachomatis E/11023]
gi|380248792|emb|CCE14076.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
F/SW5]
gi|380249668|emb|CCE13187.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
F/SW4]
gi|380250543|emb|CCE12298.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
E/SW3]
gi|440526721|emb|CCP52205.1| peptide chain release factor 1 [Chlamydia trachomatis D/SotonD1]
gi|440529397|emb|CCP54881.1| peptide chain release factor 1 [Chlamydia trachomatis E/SotonE4]
gi|440530290|emb|CCP55774.1| peptide chain release factor 1 [Chlamydia trachomatis E/SotonE8]
gi|440531187|emb|CCP56697.1| peptide chain release factor 1 [Chlamydia trachomatis F/SotonF3]
gi|440534759|emb|CCP60269.1| peptide chain release factor 1 [Chlamydia trachomatis E/Bour]
Length = 359
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK--DIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V+VAVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIP+G+ V Q++RSQ KN+A A+ LK I E+Q QE + RSA
Sbjct: 243 AVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMEG 335
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 27/163 (16%)
Query: 24 PQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PTGISVE----SQE 75
P P D DL V + G GG VRM H+ G E S+
Sbjct: 102 PDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASKGWQCEVLSASES 153
Query: 76 DRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREP 133
D K + A +KR + Q+E +R V+ V + + +H + + EP
Sbjct: 154 DLGGYKEYVMGISGASVKRFL---QYEAGTHR--VQRVPETETQGRVHTSAVTVAVLPEP 208
Query: 134 CTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 209 A----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|184154903|ref|YP_001843243.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
gi|238692951|sp|B2GAT1.1|RF1_LACF3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183226247|dbj|BAG26763.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956]
Length = 360
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GR+HTST +V V+P+ +D++V LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 186 VQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 246 RMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDY-YQQQEQ---------------- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
E D + + TG + + T + +R+TDHR
Sbjct: 289 --------------------------SEYDAQRKNAIGTGDRSERIRTYNYPQNRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+ + + M+G L E+I + D +++QL
Sbjct: 323 IGLTLNKLDKIMAGD--LEEIIESLIIADQAQKLEQL 357
>gi|169333846|ref|ZP_02861039.1| hypothetical protein ANASTE_00232 [Anaerofustis stercorihominis DSM
17244]
gi|169259411|gb|EDS73377.1| peptide chain release factor 1 [Anaerofustis stercorihominis DSM
17244]
Length = 355
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 82/103 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE SGR+HTS ++VAVLP+ +D+EV++D DL+++ R++G GGQ VNTTDSAV
Sbjct: 183 VQRIPDTESSGRIHTSAITVAVLPEAEDVEVNIDPNDLRIDVYRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIP+G+ V Q+++SQ+KN+ AL LK ++EI+ +Q+
Sbjct: 243 RITHIPSGLVVACQDEKSQLKNKDKALKILKARLFEIEQRKQQ 285
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V+++ DL+++ R++G GGQ VNTTDSA RIT
Sbjct: 213 VNIDPNDLRIDVYRSSGNGGQSVNTTDSAVRIT 245
>gi|424780166|ref|ZP_18207046.1| Peptide chain release factor 1 [Catellicoccus marimammalium
M35/04/3]
gi|422843124|gb|EKU27565.1| Peptide chain release factor 1 [Catellicoccus marimammalium
M35/04/3]
Length = 359
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 84/122 (68%), Gaps = 5/122 (4%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAV+P+ +++E+ LDEKD++V+ A+GAGGQHVN T SAV
Sbjct: 183 VQRVPVTESQGRVHTSTATVAVMPEAEEVELDLDEKDIRVDIYHASGAGGQHVNKTASAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY-----EIQFEEQENRWVVRLVTKRS 115
R+TH+PTGI V Q++RSQIKNR A+ L+ +Y E Q E NR + RS
Sbjct: 243 RLTHLPTGIVVAMQDERSQIKNREKAMKVLRARVYDKLQSEAQSEYDANRKLAVGTGDRS 302
Query: 116 AR 117
R
Sbjct: 303 ER 304
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+EKD++V+ A+GAGGQHVN T SA R+T
Sbjct: 213 LDLDEKDIRVDIYHASGAGGQHVNKTASAVRLT 245
>gi|118443694|ref|YP_879014.1| peptide chain release factor 1 [Clostridium novyi NT]
gi|166223551|sp|A0Q312.1|RF1_CLONN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118134150|gb|ABK61194.1| peptide chain release factor 1 [Clostridium novyi NT]
Length = 357
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 75/96 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +D D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI V Q+++SQ+KN+ A+ LK +YE
Sbjct: 243 RMTHIPTGIVVSCQDEKSQLKNKEKAMKVLKARLYE 278
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++V+ RA+G GGQ VNTTDSA R+T
Sbjct: 213 IQIDPNDIRVDVFRASGHGGQCVNTTDSAVRMT 245
>gi|395760366|ref|ZP_10441035.1| peptide chain release factor 1 [Janthinobacterium lividum PAMC
25724]
Length = 358
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I ++Q EQ+++
Sbjct: 244 VRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSK 289
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 215 VNINPADLRIDTYRASGAGGQHINKTDSAVRIT 247
>gi|383649036|ref|ZP_09959442.1| peptide chain release factor 1 [Sphingomonas elodea ATCC 31461]
Length = 357
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 113/218 (51%), Gaps = 44/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++ +V +D+KDL+++ RA+G GGQ VNTTDSAV
Sbjct: 184 VQRVPATEAGGRIHTSAATVAVLPEAEEADVQIDDKDLRIDIYRASGPGGQGVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q++RSQ KN+A A+ L+ +YE E+E R+ +RS
Sbjct: 244 RITHLPTGIVVIQQDERSQHKNKAKAMKVLRTRLYEA---ERERLAAERVGARRSMVGSG 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 301 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 321
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
T++ + E + G L EL+ + D R+ QL S
Sbjct: 322 NLTLHRLPEILEG--ELDELVGALVSQDEADRLAQLDS 357
>gi|333899125|ref|YP_004472998.1| peptide chain release factor 1 [Pseudomonas fulva 12-X]
gi|333114390|gb|AEF20904.1| Peptide chain release factor 1 [Pseudomonas fulva 12-X]
Length = 360
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQMAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A L + ++Q++
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRAKAMAWLA-----AKLKDQQD--------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
A H E D + K G+G + + T + R+T
Sbjct: 286 ----------------------AAAHKEISDTR---KLLVGSGDRSERIRTYNFPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLGEVIAGGVDAVIEPLLA-------EYQADQL 355
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAV 144
N KLK FE +R V+ V + ++ IH + + EP + A+
Sbjct: 172 NVFGKLK-------FESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQM-----AI 217
Query: 145 HLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ DL+V+T R++GAGGQHVNTTDSA RIT
Sbjct: 218 EINPADLRVDTYRSSGAGGQHVNTTDSAIRIT 249
>gi|315638047|ref|ZP_07893232.1| peptide chain release factor RF1 [Campylobacter upsaliensis JV21]
gi|315481895|gb|EFU72514.1| peptide chain release factor RF1 [Campylobacter upsaliensis JV21]
Length = 355
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS ++VA++P+ DIE+ ++ DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRIPQTESQGRIHTSAITVAIMPEVDDIEIQINPNDLKIDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+G+ V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPSGLVVVNQDGKSQHKNKESAMKILKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M GG + ELI + H
Sbjct: 318 INLTLYRLDAIMEGG-LFDELIEPLIAH 344
>gi|420454622|ref|ZP_14953452.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
gi|393072972|gb|EJB73746.1| peptide chain release factor 1 [Helicobacter pylori Hp A-14]
Length = 352
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKACLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|393762737|ref|ZP_10351363.1| peptide chain release factor 1 [Alishewanella agri BL06]
gi|392606359|gb|EIW89244.1| peptide chain release factor 1 [Alishewanella agri BL06]
Length = 363
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 114/217 (52%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ P+ + ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRVHTSACTVAIMPEIPESEAIEINPADLKVDTYRASGAGGQHVNRTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE Q++RSQ KNRA A+A L+ IQ E E R + T+RS
Sbjct: 246 IRITHLPTGIVVECQDERSQHKNRARAMAVLQS---RIQAAEDEKRRLEEQSTRRSLVGS 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P R+TDHR
Sbjct: 303 GDRSE------RIRTYNFPQG---------------------------------RLTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+Y + E M G L ++I ++Q + + DQL
Sbjct: 324 INLTIYRLNEVMEG--ELQQIIEPLKQ---EHQADQL 355
>gi|410584301|ref|ZP_11321406.1| peptide chain release factor 1 [Thermaerobacter subterraneus DSM
13965]
gi|410505163|gb|EKP94673.1| peptide chain release factor 1 [Thermaerobacter subterraneus DSM
13965]
Length = 389
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 114/219 (52%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +++EV +D DL+++T A+G GGQHVN T+SAV
Sbjct: 216 VQRVPVTEAGGRIHTSTATVAVLPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAV 275
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V Q++RSQ KNRA A+ L+ + + T+R +
Sbjct: 276 RITHKPTGIVVTCQDERSQHKNRARAMKILRARLLDY-------------YTRRQQEELS 322
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ S + TG + + T + +R+TDHR
Sbjct: 323 QQRRSQV------------------------------GTGERSEKIRTYNFRENRVTDHR 352
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
I T+Y + E M G L EL+ + HD Q R+ + +S
Sbjct: 353 IGLTLYRLQEVMDGD--LDELLDALAAHDEQVRLGEAVS 389
>gi|57505831|ref|ZP_00371756.1| peptide chain release factor 1 [Campylobacter upsaliensis RM3195]
gi|57015861|gb|EAL52650.1| peptide chain release factor 1 [Campylobacter upsaliensis RM3195]
Length = 355
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS ++VA++P+ DIE+ ++ DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRIPQTESQGRIHTSAITVAIMPEVDDIEIQINPNDLKIDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIP+G+ V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPSGLVVVNQDGKSQHKNKESAMKILKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M GG + ELI + H
Sbjct: 318 INLTLYRLDAIMEGG-LFDELIEPLIAH 344
>gi|26987469|ref|NP_742894.1| peptide chain release factor 1 [Pseudomonas putida KT2440]
gi|32171521|sp|Q88PW5.1|RF1_PSEPK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|24982133|gb|AAN66358.1|AE016264_2 peptide chain release factor 1 [Pseudomonas putida KT2440]
Length = 360
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNA-------------- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSAD-RIT 176
L E K G+G + + T + R+T
Sbjct: 292 -------------------------------LASERKLLVGSGDRSERIRTYNYPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++ + +SGG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLDDILSGGVDAVIEPLLA-------EYQADQL 355
>gi|421849077|ref|ZP_16282061.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus NBRC 101655]
gi|371460101|dbj|GAB27264.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus NBRC 101655]
Length = 352
Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+V+ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNETDLRVDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE++SQ KNRA A+ L+ +YE
Sbjct: 239 RLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYE 274
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+V+ RA+GAGGQHVN T+SA R+T
Sbjct: 209 VEVNETDLRVDVFRASGAGGQHVNKTESAVRLT 241
>gi|336324185|ref|YP_004604152.1| peptide chain release factor 1 [Flexistipes sinusarabici DSM 4947]
gi|336107766|gb|AEI15584.1| Peptide chain release factor 1 [Flexistipes sinusarabici DSM 4947]
Length = 356
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ +D+E+ +D+ DL+++ RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPETESGGRIHTSACTVAVLPEAEDVELEIDQNDLRIDVFRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH PTGI V Q++RSQ KN+ A+ LK + ++ +QE
Sbjct: 243 RITHEPTGIVVSCQDERSQTKNKDKAMKLLKAKLLNMEIRKQE 285
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 3/46 (6%)
Query: 134 CTT--LPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
CT LP + + +++ DL+++ RA+GAGGQHVNTTDSA RIT
Sbjct: 200 CTVAVLPEAEDVELEIDQNDLRIDVFRASGAGGQHVNTTDSAVRIT 245
>gi|170723617|ref|YP_001751305.1| peptide chain release factor 1 [Pseudomonas putida W619]
gi|229470352|sp|B1JEP6.1|RF1_PSEPW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|169761620|gb|ACA74936.1| peptide chain release factor 1 [Pseudomonas putida W619]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILAGGVDAVIEPLLA-------EYQADQL 355
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 177 LKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQV-----AIEINPADLRVDTY 229
Query: 157 RATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 230 RASGAGGQHVNKTDSAIRIT 249
>gi|398848323|ref|ZP_10605144.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
gi|398248763|gb|EJN34164.1| peptide chain release factor 1 [Pseudomonas sp. GM84]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILAGGVDAVIEPLLA-------EYQADQL 355
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++FE +R V+ V + ++ IH + + EP + A+ + DL+V+T
Sbjct: 176 KLKFESGAHR--VQRVPETESQGRIHTSACTVAVLPEPDEQV-----AIEINPADLRVDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 229 YRASGAGGQHVNKTDSAIRIT 249
>gi|331090678|ref|ZP_08339527.1| peptide chain release factor 1 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400092|gb|EGG79743.1| peptide chain release factor 1 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 356
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +D+KD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDDKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 286
Score = 42.7 bits (99), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V +++KD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDDKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|289549312|ref|YP_003474300.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
gi|289182929|gb|ADC90173.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484]
Length = 359
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 117/220 (53%), Gaps = 58/220 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ + EVH+D KDLK+ET RA+ AGGQ+VNTT++AV
Sbjct: 185 VQRVPVTEAGGRIHTSTATVAVLPEADETEVHIDPKDLKIETFRASSAGGQYVNTTETAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRSA 116
R+TH+PTGI V Q++RSQ +NR AL A+LK F +++ R
Sbjct: 245 RITHLPTGIVVTCQDERSQYQNRMKALKILYARLK------DFYDRQKR----------- 287
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDS-AD 173
++L E + G G + + T + +
Sbjct: 288 --------------------------------EELAKEKREQIGTGERSEKIRTYNFIQN 315
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
R+TDHRI T+Y + + + G L E+I + +HD + ++
Sbjct: 316 RVTDHRINLTIYRLQDVLEGK--LDEIIDALIEHDVEQKL 353
>gi|237802457|ref|YP_002887651.1| peptide chain release factor 1 [Chlamydia trachomatis B/Jali20/OT]
gi|231273691|emb|CAX10469.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis
B/Jali20/OT]
Length = 359
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK--DIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V+VAVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIP+G+ V Q++RSQ KN+A A+ LK I E+Q QE + RSA
Sbjct: 243 AVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMEG 335
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
RL ++ + P P D DL V + G GG VRM H+
Sbjct: 90 RLSKQLENLLIPPHPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYAASK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSTSESDLGGYKEYVMGISGASVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTVAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>gi|389876238|ref|YP_006369803.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
gi|388527022|gb|AFK52219.1| peptide chain release factor RF-1 [Tistrella mobilis KA081020-065]
Length = 362
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VA+LP+ +++++ +D DLK++ RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETEAQGRIHTSAATVAILPEAEEVDIAIDPADLKIDVFRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V Q++RSQ KNRA AL L+ ++E
Sbjct: 245 RITHLPTGIVVVQQDERSQHKNRAKALKILRARLFE 280
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 215 IAIDPADLKIDVFRASGAGGQHVNTTDSAVRIT 247
>gi|420518867|ref|ZP_15017312.1| peptide chain release factor 1 [Helicobacter pylori Hp H-5b]
gi|393128770|gb|EJC29210.1| peptide chain release factor 1 [Helicobacter pylori Hp H-5b]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|339445377|ref|YP_004711381.1| hypothetical protein EGYY_18470 [Eggerthella sp. YY7918]
gi|338905129|dbj|BAK44980.1| hypothetical protein EGYY_18470 [Eggerthella sp. YY7918]
Length = 357
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ ++EV ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 185 VQRVPKTESQGRIHTSTATVAVLPEADEVEVEINENDLRIDVYRAGGPGGQCVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 245 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQ 287
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 215 VEINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 247
>gi|444912192|ref|ZP_21232357.1| Peptide chain release factor 1 [Cystobacter fuscus DSM 2262]
gi|444717100|gb|ELW57935.1| Peptide chain release factor 1 [Cystobacter fuscus DSM 2262]
Length = 363
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 115/211 (54%), Gaps = 47/211 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ +D+++ L+ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 182 VQRVPATEAQGRIHTSTITVSVMPEAEDVDIKLNPADIEMQVMRSTGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H P+GI V+ Q+++SQ KNRA A L+ +YEI+ E N
Sbjct: 242 RLIHKPSGIVVKCQQEKSQGKNRAMAERMLRAKLYEIEQERIRN---------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+D + TG + + T + DR+TDHR
Sbjct: 286 ---------------------------ERDSMRRGQVGTGDRSEKIRTYNFPQDRLTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I TV+N+ MSGG + ++I+ R H YQ
Sbjct: 319 IGLTVHNLPGIMSGG--VEDIITACRTH-YQ 346
>gi|168334105|ref|ZP_02692318.1| peptide chain release factor 1 [Epulopiscium sp. 'N.t. morphotype
B']
Length = 356
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 82/103 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTSTV+VA++P+ +D++V ++ D+KV+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTVTVAIMPEAEDVDVEVNPNDVKVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ+KN+ A+ L+ +YE++ +Q+
Sbjct: 243 RLTHLPTGIVVSCQDEKSQLKNKDKAMKVLRAKLYELELNKQK 285
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + D+KV+ R++G GGQ VNTTDSA R+T
Sbjct: 213 VEVNPNDVKVDVFRSSGNGGQSVNTTDSAVRLT 245
>gi|399064447|ref|ZP_10747386.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
gi|398030691|gb|EJL24096.1| peptide chain release factor 1 [Novosphingobium sp. AP12]
Length = 356
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 80/104 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +++KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEPTEVDVQIEDKDLKIDIYRASGAGGQHVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PT + V Q++RSQ KN+A A+ L+ +YE +E +
Sbjct: 242 RITHLPTNLVVICQDERSQHKNKAKAMQVLRARLYEKMRDEAQG 285
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V +E+KDLK
Sbjct: 169 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPTEV------DVQIEDKDLK 220
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++ RA+GAGGQHVNTTDSA RIT
Sbjct: 221 IDIYRASGAGGQHVNTTDSAVRIT 244
>gi|258542227|ref|YP_003187660.1| peptide chain release factor 1 [Acetobacter pasteurianus IFO
3283-01]
gi|384042148|ref|YP_005480892.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-12]
gi|384050665|ref|YP_005477728.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-03]
gi|384053773|ref|YP_005486867.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-07]
gi|384057007|ref|YP_005489674.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-22]
gi|384059648|ref|YP_005498776.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-26]
gi|384062940|ref|YP_005483582.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-32]
gi|384119016|ref|YP_005501640.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256633305|dbj|BAH99280.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01]
gi|256636364|dbj|BAI02333.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-03]
gi|256639417|dbj|BAI05379.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-07]
gi|256642473|dbj|BAI08428.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-22]
gi|256645528|dbj|BAI11476.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-26]
gi|256648581|dbj|BAI14522.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-32]
gi|256651634|dbj|BAI17568.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654625|dbj|BAI20552.1| translation peptide chain release factor 1 (RF-1) [Acetobacter
pasteurianus IFO 3283-12]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+V+ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNETDLRVDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE++SQ KNRA A+ L+ +YE
Sbjct: 239 RLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYE 274
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+V+ RA+GAGGQHVN T+SA R+T
Sbjct: 209 VEVNETDLRVDVFRASGAGGQHVNKTESAVRLT 241
>gi|167769908|ref|ZP_02441961.1| hypothetical protein ANACOL_01249 [Anaerotruncus colihominis DSM
17241]
gi|167667899|gb|EDS12029.1| peptide chain release factor 1 [Anaerotruncus colihominis DSM
17241]
Length = 358
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 82/105 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VAVLP+ +++E LD +DL+++ R++GAGGQHVN T SA+
Sbjct: 184 VQRVPETETQGRIHTSTVTVAVLPEAEEVEFELDPRDLQIDVFRSSGAGGQHVNKTSSAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+TH+PTG+ VE Q++RSQ KN+ AL L+ + +I+ EQ ++
Sbjct: 244 RVTHLPTGMVVECQDERSQYKNKDRALKVLRARLLDIKVREQNDK 288
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 12/167 (7%)
Query: 13 LHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV-RM-THIPTGIS 70
L + + +L P+D D+K++ VE + GAGG+ + RM T G+
Sbjct: 89 LDQTAQELKILLLPRDPN---DDKNVIVEIR--GGAGGEEAALFAGVLYRMYTMYAEGLG 143
Query: 71 VESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAF 130
+ + I L K + + I E +R R R T+ I
Sbjct: 144 WQCE----VISANETELGGYKEICFSITGEGAYSRLKYESGVHRVQRVPETETQGRIHTS 199
Query: 131 REPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + L+ +DL+++ R++GAGGQHVN T SA R+T
Sbjct: 200 TVTVAVLPEAEEVEFELDPRDLQIDVFRSSGAGGQHVNKTSSAIRVT 246
>gi|153809900|ref|ZP_01962568.1| hypothetical protein RUMOBE_00281 [Ruminococcus obeum ATCC 29174]
gi|149834078|gb|EDM89158.1| peptide chain release factor 1 [Ruminococcus obeum ATCC 29174]
Length = 359
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 78/102 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA++P+ ++I+ HLD D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ+KN+ AL L+ +YE++ +Q
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQ 284
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKN-RA 84
PKD D K++ VE + GAGG + + ++ ES+ ++++ +
Sbjct: 101 PKDPN---DSKNVIVEIR--AGAGGDEAALFAAEIYRMYVKY---AESRRWKTEMMSLNE 152
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT--LPSSCP 142
N + K + + IQ + +R R R + TES CT +P +
Sbjct: 153 NGIGGFKEVTFMIQGQGAYSRLKYESGVHRVQR--VPETESGGRIHTSTCTVAIMPEAEE 210
Query: 143 A-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
HL+ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 211 IDFHLDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|304321558|ref|YP_003855201.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
gi|303300460|gb|ADM10059.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P+DI++ + E DL+++ RA+G GGQ VNTTDSAV
Sbjct: 181 VQRVPETETQGRIHTSAATVAVLPEPEDIDIDIQESDLRIDVFRASGPGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG+ V Q+++SQ KNRA A+ L+ +YE +
Sbjct: 241 RITHIPTGVVVSQQDEKSQHKNRAKAMKVLRARLYEAE 278
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++E DL+++ RA+G GGQ VNTTDSA RIT
Sbjct: 211 IDIQESDLRIDVFRASGPGGQSVNTTDSAVRIT 243
>gi|125975076|ref|YP_001038986.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|256003270|ref|ZP_05428262.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281418506|ref|ZP_06249525.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|385777561|ref|YP_005686726.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|419722892|ref|ZP_14250029.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
gi|419726392|ref|ZP_14253415.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|166223552|sp|A3DIL4.1|RF1_CLOTH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|125715301|gb|ABN53793.1| peptide chain release factor 1 [Clostridium thermocellum ATCC
27405]
gi|255992961|gb|EEU03051.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360]
gi|281407590|gb|EFB37849.1| peptide chain release factor 1 [Clostridium thermocellum JW20]
gi|316939241|gb|ADU73275.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313]
gi|380770444|gb|EIC04341.1| Peptide chain release factor 1 [Clostridium thermocellum YS]
gi|380781272|gb|EIC10933.1| Peptide chain release factor 1 [Clostridium thermocellum AD2]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 82/104 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTSTV+VAVLP+ ++I+V ++ DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPVTEANGRVHTSTVTVAVLPEAEEIDVEINPNDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTG+ V Q+ RSQ KN+ A+ L+ +YE+ E+Q N
Sbjct: 243 RITHLPTGLVVCCQDQRSQHKNKEKAMKVLRSKLYEMAREQQHN 286
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 213 VEINPNDLRIDTYRASGAGGQHINKTDSAIRIT 245
>gi|408792024|ref|ZP_11203634.1| peptide chain release factor 1 [Leptospira meyeri serovar Hardjo
str. Went 5]
gi|408463434|gb|EKJ87159.1| peptide chain release factor 1 [Leptospira meyeri serovar Hardjo
str. Went 5]
Length = 349
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS V+VA+LP+ ++ EV + E DL+++ R++GAGGQHVNTTDSAV
Sbjct: 176 VQRIPETESGGRIHTSAVTVAILPEAEEKEVEIRESDLRIDVYRSSGAGGQHVNTTDSAV 235
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI V SQE+RSQIKNR A+ L+ I +
Sbjct: 236 RITHIPTGIVVASQEERSQIKNRDKAMRVLRARIID 271
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 VEIRESDLRIDVYRSSGAGGQHVNTTDSAVRIT 238
>gi|420476750|ref|ZP_14975413.1| peptide chain release factor 1 [Helicobacter pylori Hp H-23]
gi|420480088|ref|ZP_14978732.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1]
gi|420481647|ref|ZP_14980284.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2]
gi|420510532|ref|ZP_15009022.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1b]
gi|420512067|ref|ZP_15010550.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2b]
gi|393095175|gb|EJB95780.1| peptide chain release factor 1 [Helicobacter pylori Hp H-23]
gi|393098001|gb|EJB98593.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1]
gi|393098881|gb|EJB99462.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2]
gi|393122273|gb|EJC22750.1| peptide chain release factor 1 [Helicobacter pylori Hp P-1b]
gi|393157130|gb|EJC57391.1| peptide chain release factor 1 [Helicobacter pylori Hp P-2b]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|312897943|ref|ZP_07757356.1| peptide chain release factor 1 [Megasphaera micronuciformis F0359]
gi|310620977|gb|EFQ04524.1| peptide chain release factor 1 [Megasphaera micronuciformis F0359]
Length = 361
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +D+E++L+ +D++V+ RA+GAGGQHVN T SAV
Sbjct: 185 VQRVPVTESGGRIHTSTATVAVLPEAEDVEINLNMEDVRVDYFRASGAGGQHVNKTSSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI 94
RMTHIP+GI VE Q++RSQ++NRA A+ LK RL+
Sbjct: 245 RMTHIPSGIVVECQDERSQLENRAKAVRVLKARLL 279
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++L +D++V+ RA+GAGGQHVN T SA R+T
Sbjct: 215 INLNMEDVRVDYFRASGAGGQHVNKTSSAVRMT 247
>gi|295109135|emb|CBL23088.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus
obeum A2-162]
Length = 358
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 78/102 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA++P+ ++I+ HLD D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ+KN+ AL L+ +YE++ +Q
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQ 284
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKN-RA 84
PKD D K++ VE + GAGG + + ++ ES+ ++++ +
Sbjct: 101 PKDPN---DSKNVIVEIR--AGAGGDEAALFAAEIYRMYVKY---AESRRWKTEMMSLNE 152
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT--LPSSCP 142
N + K + + IQ + +R R R + TES CT +P +
Sbjct: 153 NGIGGFKEVTFMIQGQGAYSRLKYESGVHRVQR--VPETESGGRIHTSTCTVAIMPEAEE 210
Query: 143 A-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
HL+ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 211 IDFHLDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|217977729|ref|YP_002361876.1| peptide chain release factor 1 [Methylocella silvestris BL2]
gi|254790890|sp|B8EI32.1|RF1_METSB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|217503105|gb|ACK50514.1| peptide chain release factor 1 [Methylocella silvestris BL2]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 111/207 (53%), Gaps = 43/207 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V ++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPDTETQGRIHTSAATVAVLPEAQEVDVEINEADLKIDTMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V Q++RSQ KNRA A+A L+ IY+ E+++ R +RS
Sbjct: 243 RITHIPTGTIVFVQDERSQHKNRARAMALLRSRIYD---EQRQKLDAERAADRRSQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQH 207
T+Y + + ++G A L E+I + H
Sbjct: 321 NLTLYKLDKVITGEA-LDEVIDALTTH 346
>gi|420485110|ref|ZP_14983728.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|420515601|ref|ZP_15014064.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|420517302|ref|ZP_15015757.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
gi|393103245|gb|EJC03808.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4]
gi|393123900|gb|EJC24368.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4c]
gi|393125116|gb|EJC25582.1| peptide chain release factor 1 [Helicobacter pylori Hp P-4d]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420416248|ref|ZP_14915359.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
gi|393037694|gb|EJB38729.1| peptide chain release factor 1 [Helicobacter pylori NQ4044]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|433450163|ref|ZP_20412524.1| peptide chain release factor 1 [Mycoplasma sp. G5847]
gi|431933975|gb|ELK20529.1| peptide chain release factor 1 [Mycoplasma sp. G5847]
Length = 364
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIDIKPGDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHIPTGIVVTSQDGRSQHDNKDVAMTMLRAKVYEAEVEKQQ 289
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 87 LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPS-SCPAVH 145
+ K R+ +++FE +R V+ V K A+ I + + + LP S +
Sbjct: 168 MIKGDRVYSKLKFESGAHR--VQRVPKTEAKGRIQTSTATV-------AVLPEMSEVEID 218
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++ DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 219 IKPGDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|420461366|ref|ZP_14960157.1| peptide chain release factor 1 [Helicobacter pylori Hp H-3]
gi|393081882|gb|EJB82600.1| peptide chain release factor 1 [Helicobacter pylori Hp H-3]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420429732|ref|ZP_14928762.1| peptide chain release factor 1 [Helicobacter pylori Hp A-20]
gi|393048351|gb|EJB49318.1| peptide chain release factor 1 [Helicobacter pylori Hp A-20]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|421852079|ref|ZP_16284770.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371479770|dbj|GAB29973.1| translation peptide chain release factor 1 [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+V+ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVDINETDLRVDVFRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE++SQ KNRA A+ L+ +YE
Sbjct: 239 RLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYE 274
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+V+ RA+GAGGQHVN T+SA R+T
Sbjct: 209 VDINETDLRVDVFRASGAGGQHVNKTESAVRLT 241
>gi|315651889|ref|ZP_07904892.1| peptide chain release factor RF1 [Lachnoanaerobaculum saburreum DSM
3986]
gi|419718622|ref|ZP_14245935.1| peptide chain release factor 1 [Lachnoanaerobaculum saburreum
F0468]
gi|315485891|gb|EFU76270.1| peptide chain release factor RF1 [Lachnoanaerobaculum saburreum DSM
3986]
gi|383305212|gb|EIC96584.1| peptide chain release factor 1 [Lachnoanaerobaculum saburreum
F0468]
Length = 356
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++++V +D D++++ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI + SQ ++SQ++N+ A L+ +YEI+ E+ K+SA
Sbjct: 242 RLTHYPTGIVIYSQTEKSQLQNKEKAFTLLRSKLYEIELEK-----------KQSAEAAD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ TG + + T + R+TDHR
Sbjct: 291 RRSQI--------------------------------GTGDRSEKIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + M+G + ELI
Sbjct: 319 INLTLYKLDKIMNGD--IQELI 338
>gi|420428090|ref|ZP_14927125.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|420444709|ref|ZP_14943626.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|420454265|ref|ZP_14953099.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
gi|393045749|gb|EJB46729.1| peptide chain release factor 1 [Helicobacter pylori Hp A-17]
gi|393064329|gb|EJB65168.1| peptide chain release factor 1 [Helicobacter pylori Hp H-42]
gi|393068738|gb|EJB69540.1| peptide chain release factor 1 [Helicobacter pylori Hp A-8]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|359298769|ref|ZP_09184608.1| peptide chain release factor 1 [Haemophilus [parainfluenzae] CCUG
13788]
gi|402306985|ref|ZP_10826018.1| peptide chain release factor 1 [Haemophilus sputorum HK 2154]
gi|400373829|gb|EJP26756.1| peptide chain release factor 1 [Haemophilus sputorum HK 2154]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|338972237|ref|ZP_08627612.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|414169115|ref|ZP_11424952.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
gi|338234401|gb|EGP09516.1| peptide chain release factor 1 [Bradyrhizobiaceae bacterium SG-6C]
gi|410885874|gb|EKS33687.1| peptide chain release factor 1 [Afipia clevelandensis ATCC 49720]
Length = 361
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 113/204 (55%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEAEEVDVAIKDTDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + RL ++RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RLDSERSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKGQVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L EL+
Sbjct: 320 HRINLTLYKLPQVIAGDA-LGELV 342
>gi|261493250|ref|ZP_05989777.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261496507|ref|ZP_05992887.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261307710|gb|EEY09033.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261311100|gb|EEY12276.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|420486702|ref|ZP_14985310.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8]
gi|420520589|ref|ZP_15019020.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8b]
gi|393104255|gb|EJC04812.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8]
gi|393127176|gb|EJC27621.1| peptide chain release factor 1 [Helicobacter pylori Hp P-8b]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420473478|ref|ZP_14972156.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
gi|393090606|gb|EJB91239.1| peptide chain release factor 1 [Helicobacter pylori Hp H-19]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386755154|ref|YP_006228371.1| peptide chain release factor 1 [Helicobacter pylori PeCan18]
gi|384561412|gb|AFI01878.1| peptide chain release factor 1 [Helicobacter pylori PeCan18]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|336316446|ref|ZP_08571344.1| peptide chain release factor 1 [Rheinheimera sp. A13L]
gi|335879225|gb|EGM77126.1| peptide chain release factor 1 [Rheinheimera sp. A13L]
Length = 363
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 110/211 (52%), Gaps = 49/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ P+ + ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRVHTSACTVAIMPEVPESEAIEINPADLKVDTYRASGAGGQHVNRTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE Q++RSQ KNRA A++ L+ IQ E E R +V T+RS
Sbjct: 246 IRITHLPTGIVVECQDERSQHKNRARAMSVLQS---RIQAAEDEKRRLVEESTRRSLVGS 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P R+TDHR
Sbjct: 303 GDRSE------RIRTYNFPQG---------------------------------RLTDHR 323
Query: 180 IQRTVYNVAEFMSG------GAMLHELISDI 204
I T+Y + + M G G + HE +D+
Sbjct: 324 INLTIYRLLDVMEGDLDLVIGPLSHEHQADL 354
>gi|168185914|ref|ZP_02620549.1| peptide chain release factor 1 [Clostridium botulinum C str.
Eklund]
gi|169296113|gb|EDS78246.1| peptide chain release factor 1 [Clostridium botulinum C str.
Eklund]
Length = 357
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 75/96 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +D D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI V Q+++SQ+KN+ A+ LK +YE
Sbjct: 243 RMTHIPTGIVVSCQDEKSQLKNKEKAMKVLKARLYE 278
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++V+ RA+G GGQ VNTTDSA R+T
Sbjct: 213 IQIDPNDIRVDVFRASGHGGQCVNTTDSAVRMT 245
>gi|254362308|ref|ZP_04978420.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213]
gi|452745893|ref|ZP_21945725.1| peptide chain release factor 1 [Mannheimia haemolytica serotype 6
str. H23]
gi|153093888|gb|EDN74816.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213]
gi|452086032|gb|EME02423.1| peptide chain release factor 1 [Mannheimia haemolytica serotype 6
str. H23]
Length = 360
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|420474957|ref|ZP_14973628.1| peptide chain release factor 1 [Helicobacter pylori Hp H-21]
gi|393093064|gb|EJB93681.1| peptide chain release factor 1 [Helicobacter pylori Hp H-21]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386750513|ref|YP_006223733.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
gi|384556771|gb|AFH97239.1| peptide chain release factor 1 [Helicobacter pylori Shi417]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|295105808|emb|CBL03351.1| bacterial peptide chain release factor 1 (bRF-1) [Gordonibacter
pamelaeae 7-10-1-b]
Length = 357
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ ++EV ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 185 VQRVPKTESQGRIHTSTATVAVLPEADEVEVDINENDLRIDVYRAGGPGGQCVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 245 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQ 287
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 215 VDINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 247
>gi|445494095|ref|ZP_21461139.1| peptide chain release factor 1 [Janthinobacterium sp. HH01]
gi|444790256|gb|ELX11803.1| peptide chain release factor 1 [Janthinobacterium sp. HH01]
Length = 371
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 197 VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 256
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I ++Q EQ+++
Sbjct: 257 VRITHLPTGIVVECQDDRSQHKNKAQAMRVLATRIKDVQLREQQSK 302
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 228 VNINPADLRIDTYRASGAGGQHINKTDSAVRIT 260
>gi|420500531|ref|ZP_14999077.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
gi|393152298|gb|EJC52599.1| peptide chain release factor 1 [Helicobacter pylori Hp P-30]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420424660|ref|ZP_14923724.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|420530596|ref|ZP_15028972.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
gi|393043247|gb|EJB44251.1| peptide chain release factor 1 [Helicobacter pylori Hp A-5]
gi|393139375|gb|EJC39753.1| peptide chain release factor 1 [Helicobacter pylori Hp P-28b]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|92116091|ref|YP_575820.1| peptide chain release factor 1 [Nitrobacter hamburgensis X14]
gi|119361567|sp|Q1QQY7.1|RF1_NITHX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91798985|gb|ABE61360.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter
hamburgensis X14]
Length = 361
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRVHTSAATVAVLPEAEEVDVDIKTDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RINAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ KD + +G + + T + R+TDHR
Sbjct: 293 --------------------------DRKD-----QVGSGDRSERIRTYNFPQGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + ++G A LHELI
Sbjct: 322 INLTLYKLPQVIAGDA-LHELI 342
>gi|420496957|ref|ZP_14995518.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25]
gi|420527312|ref|ZP_15025707.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25c]
gi|420529137|ref|ZP_15027525.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25d]
gi|393114654|gb|EJC15169.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25]
gi|393135279|gb|EJC35681.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25c]
gi|393138251|gb|EJC38633.1| peptide chain release factor 1 [Helicobacter pylori Hp P-25d]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420468129|ref|ZP_14966874.1| peptide chain release factor 1 [Helicobacter pylori Hp H-10]
gi|393088671|gb|EJB89317.1| peptide chain release factor 1 [Helicobacter pylori Hp H-10]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420451410|ref|ZP_14950262.1| peptide chain release factor 1 [Helicobacter pylori Hp A-6]
gi|393070268|gb|EJB71058.1| peptide chain release factor 1 [Helicobacter pylori Hp A-6]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420441437|ref|ZP_14940383.1| peptide chain release factor 1 [Helicobacter pylori Hp H-36]
gi|393060498|gb|EJB61370.1| peptide chain release factor 1 [Helicobacter pylori Hp H-36]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|188526883|ref|YP_001909570.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
gi|238691882|sp|B2URQ8.1|RF1_HELPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|188143123|gb|ACD47540.1| peptide chain release factor 1 [Helicobacter pylori Shi470]
Length = 352
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINSSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|1526559|dbj|BAA08795.1| peptide termination factor [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 370
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|420456333|ref|ZP_14955155.1| peptide chain release factor 1 [Helicobacter pylori Hp A-16]
gi|393076431|gb|EJB77184.1| peptide chain release factor 1 [Helicobacter pylori Hp A-16]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386390132|ref|ZP_10074928.1| peptide chain release factor 1 [Haemophilus paraphrohaemolyticus
HK411]
gi|385693816|gb|EIG24448.1| peptide chain release factor 1 [Haemophilus paraphrohaemolyticus
HK411]
Length = 360
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|352102003|ref|ZP_08959050.1| peptide chain release factor 1 [Halomonas sp. HAL1]
gi|350600174|gb|EHA16244.1| peptide chain release factor 1 [Halomonas sp. HAL1]
Length = 362
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 116/215 (53%), Gaps = 53/215 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D+ ++ ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVMPEVDDVGDIDINSADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+TH+PTG+ VE QE+RSQ KNRA A+ AKLKR + Q +EQ + +RS
Sbjct: 246 IRITHLPTGVVVECQEERSQHKNRAKAMSLLAAKLKRNAVDSQRQEQAD-------ARRS 298
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R+E R P RI
Sbjct: 299 LVGSGDRSE------RIRTYNFPQG---------------------------------RI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
TDHRI T+Y + E +S G L ++I+ + H+YQ
Sbjct: 320 TDHRINLTLYKLNEVVS-GEQLDDVINPL-IHEYQ 352
>gi|167038767|ref|YP_001661752.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514]
gi|300913648|ref|ZP_07130965.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561]
gi|307723337|ref|YP_003903088.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513]
gi|238687578|sp|B0K1F7.1|RF1_THEPX RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166853007|gb|ABY91416.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514]
gi|300890333|gb|EFK85478.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561]
gi|307580398|gb|ADN53797.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513]
Length = 356
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+KV+ R+ G GGQ VNTTDSAV
Sbjct: 182 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 285 ----------REIAETRKSQV----------------GTGERSERIRTYNYPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYRLQEVLDGD--LDEIIDALILND 345
>gi|421709474|ref|ZP_16148834.1| peptide chain release factor 1 [Helicobacter pylori R018c]
gi|421722728|ref|ZP_16161987.1| peptide chain release factor 1 [Helicobacter pylori R056a]
gi|407212031|gb|EKE81896.1| peptide chain release factor 1 [Helicobacter pylori R018c]
gi|407226512|gb|EKE96278.1| peptide chain release factor 1 [Helicobacter pylori R056a]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|407693843|ref|YP_006818632.1| peptide chain release factor 1 [Actinobacillus suis H91-0380]
gi|407389900|gb|AFU20393.1| peptide chain release factor 1 [Actinobacillus suis H91-0380]
Length = 360
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|420439760|ref|ZP_14938720.1| peptide chain release factor 1 [Helicobacter pylori Hp H-30]
gi|393057786|gb|EJB58682.1| peptide chain release factor 1 [Helicobacter pylori Hp H-30]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|308183875|ref|YP_003928008.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
gi|308059795|gb|ADO01691.1| peptide chain release factor 1 [Helicobacter pylori SJM180]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|406706711|ref|YP_006757064.1| peptide chain release factor 1 (bRF-1) [alpha proteobacterium
HIMB5]
gi|406652487|gb|AFS47887.1| bacterial peptide chain release factor 1 (bRF-1) [alpha
proteobacterium HIMB5]
Length = 356
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 108/197 (54%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V +++ DL+++ RA G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTETQGRVHTSAATVAVLPEAEEVDVKINDSDLRIDVFRAGGPGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KN+A + L+ IYE FE R+ +RS
Sbjct: 244 RITHIPTGISVSQQDEKSQHKNKAKGMKILRSRIYE--FERS------RIDQERS----- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
KD K TK TG + + T + R+TDHR
Sbjct: 291 ----------------------------KDRK--TKIGTGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGAM 196
I T++ + EF+ G A
Sbjct: 321 INLTLHKLEEFLEGEAF 337
>gi|420431656|ref|ZP_14930675.1| peptide chain release factor 1 [Helicobacter pylori Hp H-16]
gi|420478528|ref|ZP_14977181.1| peptide chain release factor 1 [Helicobacter pylori Hp H-34]
gi|393049249|gb|EJB50215.1| peptide chain release factor 1 [Helicobacter pylori Hp H-16]
gi|393097302|gb|EJB97896.1| peptide chain release factor 1 [Helicobacter pylori Hp H-34]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420408067|ref|ZP_14907226.1| peptide chain release factor 1 [Helicobacter pylori NQ4216]
gi|393025552|gb|EJB26658.1| peptide chain release factor 1 [Helicobacter pylori NQ4216]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|385218343|ref|YP_005779818.1| peptide chain release factor 1 [Helicobacter pylori Gambia94/24]
gi|317013501|gb|ADU80937.1| peptide chain release factor 1 [Helicobacter pylori Gambia94/24]
Length = 352
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|253580116|ref|ZP_04857383.1| peptide chain release factor 1 [Ruminococcus sp. 5_1_39B_FAA]
gi|251848635|gb|EES76598.1| peptide chain release factor 1 [Ruminococcus sp. 5_1_39BFAA]
Length = 358
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 78/102 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA++P+ ++I+ HLD D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ+KN+ AL L+ +YE++ +Q
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQ 284
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
HL+ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 FHLDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|126337707|ref|XP_001368579.1| PREDICTED: peptide chain release factor 1, mitochondrial
[Monodelphis domestica]
Length = 447
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 113/205 (55%), Gaps = 47/205 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP ++++ ++ KDL+++T RA GAGGQHVNTTD
Sbjct: 259 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDIRVEPKDLRIDTFRAKGAGGQHVNTTD 318
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTG+ VE Q+ RSQI+N+ A L+ +Y+ E+++++ K+S R
Sbjct: 319 SAVRIVHIPTGLVVECQQQRSQIQNKDTAFRLLRAKLYQQTIEKEQSK-------KQSVR 371
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
L+V T+ A + + T + + DR+T
Sbjct: 372 K--------------------------------LQVGTR----AQSERIRTYNFTQDRVT 395
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELI 201
DHRI ++ EF+ GG L LI
Sbjct: 396 DHRISYEARDIKEFLCGGRPLDTLI 420
>gi|51891211|ref|YP_073902.1| peptide chain release factor 1 [Symbiobacterium thermophilum IAM
14863]
gi|81610729|sp|Q67TD5.1|RF1_SYMTH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51854900|dbj|BAD39058.1| peptide chain release factor 1 [Symbiobacterium thermophilum IAM
14863]
Length = 356
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAV+P+ +++++ + +DLK+E +RA GAGGQHVN T+SAV
Sbjct: 183 VQRVPVTESQGRIHTSTVTVAVMPEMEEVDIEIKPEDLKIEVQRAGGAGGQHVNKTESAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V ++RSQ++NR AL R++ R A
Sbjct: 243 RMTHLPTGIVVYCADERSQMQNREKAL---------------------RVLRARVADYYA 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ +S EE+ L+ + TG + + T + DR+TDHR
Sbjct: 282 QQAKS---------------------EEEQLR-RAQVGTGERSEKIRTYNFPQDRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I TV+N+A M G + +I + QH+
Sbjct: 320 IGLTVHNIAAVMDG--EIDHIIDALAQHE 346
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISV 71
+L T + + +L P+D D+K++ +E + GAGG + A + + T ++
Sbjct: 87 KLQTLSDELRILLLPRDPN---DDKNVIMEIR--AGAGGDEASLF--AAELFRMYTRLAE 139
Query: 72 ESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFR 131
+ + N +K ++++I E +R R R + ++ I
Sbjct: 140 RHKWKTEVLSISENEAGGIKEVLFQINAEGAYSRLKYEGGVHRVQRVPVTESQGRIHTST 199
Query: 132 EPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+P + ++ +DLK+E +RA GAGGQHVN T+SA R+T
Sbjct: 200 VTVAVMPEMEEVDIEIKPEDLKIEVQRAGGAGGQHVNKTESAVRMT 245
>gi|420502046|ref|ZP_15000587.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
gi|393153326|gb|EJC53619.1| peptide chain release factor 1 [Helicobacter pylori Hp P-41]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|326389251|ref|ZP_08210819.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW
200]
gi|325994614|gb|EGD53038.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW
200]
Length = 356
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+KV+ R+ G GGQ VNTTDSAV
Sbjct: 182 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 285 ----------REIAETRKSQV----------------GTGERSERIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYRLQEVLDGD--LDEIIDALILND 345
>gi|384890458|ref|YP_005764591.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|385223128|ref|YP_005783054.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
gi|385230976|ref|YP_005790895.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|307636767|gb|ADN79217.1| peptide chain release factor 1 [Helicobacter pylori 908]
gi|325995353|gb|ADZ50758.1| Peptide chain release factor 1 [Helicobacter pylori 2018]
gi|325996950|gb|ADZ49158.1| Peptide chain release factor 1 [Helicobacter pylori 2017]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420488281|ref|ZP_14986881.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11]
gi|393108852|gb|EJC09384.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420438109|ref|ZP_14937086.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
gi|393057484|gb|EJB58386.1| peptide chain release factor 1 [Helicobacter pylori Hp H-29]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420433258|ref|ZP_14932267.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24]
gi|420507014|ref|ZP_15005527.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24b]
gi|420508705|ref|ZP_15007207.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24c]
gi|420532450|ref|ZP_15030813.1| peptide chain release factor 1 [Helicobacter pylori Hp M1]
gi|420534015|ref|ZP_15032366.1| peptide chain release factor 1 [Helicobacter pylori Hp M2]
gi|420535820|ref|ZP_15034162.1| peptide chain release factor 1 [Helicobacter pylori Hp M3]
gi|420537525|ref|ZP_15035855.1| peptide chain release factor 1 [Helicobacter pylori Hp M4]
gi|420539252|ref|ZP_15037571.1| peptide chain release factor 1 [Helicobacter pylori Hp M5]
gi|420541007|ref|ZP_15039315.1| peptide chain release factor 1 [Helicobacter pylori Hp M6]
gi|420542404|ref|ZP_15040701.1| peptide chain release factor 1 [Helicobacter pylori Hp M9]
gi|393052126|gb|EJB53076.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24]
gi|393119095|gb|EJC19586.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24b]
gi|393120131|gb|EJC20620.1| peptide chain release factor 1 [Helicobacter pylori Hp H-24c]
gi|393140081|gb|EJC40454.1| peptide chain release factor 1 [Helicobacter pylori Hp M1]
gi|393142238|gb|EJC42592.1| peptide chain release factor 1 [Helicobacter pylori Hp M2]
gi|393143468|gb|EJC43812.1| peptide chain release factor 1 [Helicobacter pylori Hp M3]
gi|393145080|gb|EJC45411.1| peptide chain release factor 1 [Helicobacter pylori Hp M4]
gi|393146937|gb|EJC47262.1| peptide chain release factor 1 [Helicobacter pylori Hp M5]
gi|393147627|gb|EJC47951.1| peptide chain release factor 1 [Helicobacter pylori Hp M6]
gi|393160325|gb|EJC60572.1| peptide chain release factor 1 [Helicobacter pylori Hp M9]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|425433306|ref|ZP_18813843.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
gi|410714191|gb|EKQ71672.1| peptide chain release factor 1 [Helicobacter pylori GAM100Ai]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|307244800|ref|ZP_07526899.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253754|ref|ZP_07535608.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258211|ref|ZP_07539954.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854245|gb|EFM86451.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863238|gb|EFM95178.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867671|gb|EFM99516.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 360
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|420471558|ref|ZP_14970256.1| peptide chain release factor 1 [Helicobacter pylori Hp H-18]
gi|393092022|gb|EJB92648.1| peptide chain release factor 1 [Helicobacter pylori Hp H-18]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420448092|ref|ZP_14946976.1| peptide chain release factor 1 [Helicobacter pylori Hp H-44]
gi|393066905|gb|EJB67723.1| peptide chain release factor 1 [Helicobacter pylori Hp H-44]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|157736354|ref|YP_001489037.1| peptide chain release factor 1 [Arcobacter butzleri RM4018]
gi|315635491|ref|ZP_07890757.1| peptide chain release factor RF1 [Arcobacter butzleri JV22]
gi|384154795|ref|YP_005537610.1| peptide chain release factor 1 [Arcobacter butzleri ED-1]
gi|166977359|sp|A8EQZ4.1|RF1_ARCB4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|157698208|gb|ABV66368.1| peptide chain release factor 1 [Arcobacter butzleri RM4018]
gi|315480249|gb|EFU70916.1| peptide chain release factor RF1 [Arcobacter butzleri JV22]
gi|345468349|dbj|BAK69800.1| peptide chain release factor 1 [Arcobacter butzleri ED-1]
Length = 355
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 79/102 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+E+ ++E DLK++ RA+G GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEIEINENDLKIDVMRASGNGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIP+GI V +Q+ +SQ KN+ AL LK +YEI+ E++
Sbjct: 241 RITHIPSGIVVTNQDQKSQHKNKDRALKVLKAKLYEIEMEKK 282
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + E DLK++ RA+G GGQ VNTTDSA RIT
Sbjct: 211 IEINENDLKIDVMRASGNGGQSVNTTDSAVRIT 243
>gi|189424095|ref|YP_001951272.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
gi|238692126|sp|B3E628.1|RF1_GEOLS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189420354|gb|ACD94752.1| peptide chain release factor 1 [Geobacter lovleyi SZ]
Length = 355
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 112/214 (52%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VA++ + +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V QE+RSQIKNRA A+ LK I + +EQ +
Sbjct: 240 RITHIPTGTVVACQEERSQIKNRAKAMKVLKTRILDTIQQEQNAK--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------LAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E+ +R H YQ
Sbjct: 315 HRIGLTLYRLDSIMAGD--IEEITDALRAH-YQM 345
>gi|46446286|ref|YP_007651.1| peptide chain release factor 1 [Candidatus Protochlamydia
amoebophila UWE25]
gi|61214629|sp|Q6MDH3.1|RF1_PARUW RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|46399927|emb|CAF23376.1| probable translation releasing factor RF-1 [Candidatus
Protochlamydia amoebophila UWE25]
Length = 359
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 80/99 (80%), Gaps = 1/99 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP-KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +++AVLP+P ++ E+ LDEKDL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPATEAQGRVHTSAITIAVLPEPDENEEIDLDEKDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
VR+TH+P+GI V QE+RSQ KN+ A+ LK + EI+
Sbjct: 244 VRITHVPSGIVVYCQEERSQHKNKDKAMRLLKAKMAEIE 282
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 138 PSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
P + L+EKDL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 209 PDENEEIDLDEKDLRIDTYRSSGAGGQHVNTTDSAVRIT 247
>gi|374710396|ref|ZP_09714830.1| peptide chain release factor 1 [Sporolactobacillus inulinus CASD]
Length = 357
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 60/223 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ L++KD++V+ ++G GGQ VNTT SA+
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEARDVEIELNDKDIRVDRFASSGPGGQSVNTTMSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY-----EIQFEEQENRWVVRLVTKRS 115
R+TH+PTGI V QE+RSQIKN+ A+ L+ +Y E Q E NR
Sbjct: 243 RLTHLPTGIVVSCQEERSQIKNKEKAMKVLRARVYDKYQKEAQAEYDSNR---------- 292
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SA 172
K A G G + + T + S
Sbjct: 293 ----------------------------------------KMAVGTGDRSERIRTYNFSQ 312
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQ 215
+R+TDHRI T++ + + ++G L E+I + HD + +I+Q
Sbjct: 313 NRVTDHRIGLTIHQLDQVLNGK--LDEIIQALILHDQEKKIEQ 353
>gi|421596648|ref|ZP_16040424.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
gi|404271243|gb|EJZ35147.1| peptide chain release factor 1 [Bradyrhizobium sp. CCGE-LA001]
Length = 361
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+EV + +DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVEVDIKTEDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 245 RITHMPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|389795949|ref|ZP_10199055.1| peptide chain release factor 1 [Rhodanobacter fulvus Jip2]
gi|388429999|gb|EIL87213.1| peptide chain release factor 1 [Rhodanobacter fulvus Jip2]
Length = 359
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 119/218 (54%), Gaps = 50/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA++P P +I E+ ++ DLK +T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSAATVAIMPVPDEIDEIEINPADLKTDTFRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE Q++RSQ KNRA AL+ LK + +++ +Q +RS
Sbjct: 244 IRITHIPTGTVVECQDERSQHKNRARALSLLKARLLDVERSKQSE--------ERS---- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
E + L+V +G Q + T + RITDH
Sbjct: 292 ---------------------------EARRLQV----GSGDRSQRIRTYNYPQGRITDH 320
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
RI T+Y + E + G L ELI + + +++ DQL
Sbjct: 321 RINLTLYRLPEIVQGD--LGELIDALNR---EYQADQL 353
>gi|197301354|ref|ZP_03166435.1| hypothetical protein RUMLAC_00081 [Ruminococcus lactaris ATCC
29176]
gi|197299511|gb|EDY34030.1| peptide chain release factor 1 [Ruminococcus lactaris ATCC 29176]
Length = 356
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH PTGI + SQ ++SQ++N+ A L+ +Y+++ E+Q+
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKQQ 285
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|420419179|ref|ZP_14918269.1| peptide chain release factor 1 [Helicobacter pylori NQ4076]
gi|393031085|gb|EJB32157.1| peptide chain release factor 1 [Helicobacter pylori NQ4076]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPGDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VTLNPGDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|377822674|ref|YP_005175600.1| peptide chain release factor 1 [Mycoplasma pneumoniae 309]
gi|385326947|ref|YP_005881379.1| peptide chain release factor 1 [Mycoplasma pneumoniae FH]
gi|301633339|gb|ADK86893.1| peptide chain release factor 1 [Mycoplasma pneumoniae FH]
gi|358640642|dbj|BAL21936.1| peptide chain release factor 1 [Mycoplasma pneumoniae 309]
gi|440453518|gb|AGC04277.1| Peptide chain release factor RF-1 [Mycoplasma pneumoniae M129-B7]
Length = 359
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 77/102 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLPQ + +EVH++ DL+V+T RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNRTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTGI V QE +SQ NR A+ L+ ++E EQ
Sbjct: 246 RITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQ 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
VH+ DL+V+T RA+GAGGQHVN T+SA RIT
Sbjct: 216 VHINPADLRVDTYRASGAGGQHVNRTESAVRIT 248
>gi|144897745|emb|CAM74609.1| peptide chain release factor RF-1 [Magnetospirillum gryphiswaldense
MSR-1]
Length = 352
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 107/196 (54%), Gaps = 42/196 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VA++P+ +++++ +D+KDL+ + R+ G+GGQ VNTTDSAV
Sbjct: 178 VQRVPATESGGRIHTSAATVAIMPEAEEVDIQIDDKDLRFDVYRSQGSGGQSVNTTDSAV 237
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG++V Q+++SQ KN+A A+ L+ +YE+ E+ ++ R ++S
Sbjct: 238 RVTHIPTGLAVACQQEKSQHKNKATAMKLLRARLYEM---ERASKAAERAANRKSQVGSG 294
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 295 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 315
Query: 181 QRTVYNVAEFMSGGAM 196
T+Y + + M+G A+
Sbjct: 316 NLTLYKIDDMMNGTAL 331
>gi|13508100|ref|NP_110049.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129]
gi|2500138|sp|P75420.1|RF1_MYCPN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|1674166|gb|AAB96123.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129]
Length = 359
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 77/102 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLPQ + +EVH++ DL+V+T RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNRTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+TH+PTGI V QE +SQ NR A+ L+ ++E EQ
Sbjct: 246 RITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQ 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
VH+ DL+V+T RA+GAGGQHVN T+SA RIT
Sbjct: 216 VHINPADLRVDTYRASGAGGQHVNRTESAVRIT 248
>gi|83319336|ref|YP_424135.1| peptide chain release factor 1 [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|90110051|sp|P71496.2|RF1_MYCCT RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|83283222|gb|ABC01154.1| peptide chain release factor 1 [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 363
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|298292694|ref|YP_003694633.1| peptide chain release factor 1 [Starkeya novella DSM 506]
gi|296929205|gb|ADH90014.1| peptide chain release factor 1 [Starkeya novella DSM 506]
Length = 365
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +D+++ ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 185 VQRVPETEGSGRIHTSAATVAVLPEVEDVDIAINESDLRIDVFRASGAGGQHVNKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTG V Q++RSQ KN+A A+ L+ IYE + E++++
Sbjct: 245 RITHLPTGTVVAVQDERSQHKNKARAMGMLRARIYEAEREKRDS 288
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 15 TSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQ 74
T V +A+LP+ +DE+ + +E + TG G + RM G++ S
Sbjct: 94 THAVRLALLPKDA-----MDERGVILEVRAGTG-GDEAALFAGDLFRMYERFAGLNGWSV 147
Query: 75 EDRSQIKNRANALAKLKRLIY------EIQFEEQENRWVVRLVTKRSARTIIHRTESPII 128
E S + A ++ ++ +++FE +R V+ V + IH + + +
Sbjct: 148 EVLSLTEGTAGGFKEIVAALHGSGAYAKLKFESGVHR--VQRVPETEGSGRIHTSAATV- 204
Query: 129 AFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 205 ------AVLPEVEDVDIAINESDLRIDVFRASGAGGQHVNKTESAVRIT 247
>gi|256384120|gb|ACU78690.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256384952|gb|ACU79521.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455380|gb|ADH21615.1| peptide chain release factor 1 [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 364
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|357031644|ref|ZP_09093587.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
gi|356414874|gb|EHH68518.1| peptide chain release factor 1 [Gluconobacter morbifer G707]
Length = 353
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVTINDDDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V QE++SQ KNRA A+ L+ +YE Q R+
Sbjct: 240 RITHLPTGVVVAMQEEKSQHKNRAKAMKILRARLYERQ------------------RSAA 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E + +++ TG + + T + R+TDHR
Sbjct: 282 H-------------------------ESRAADRKSQVGTGDRSERIRTYNFPQGRVTDHR 316
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + M+G
Sbjct: 317 INLTLYKIDRVMAG 330
>gi|313665080|ref|YP_004046951.1| peptide chain release factor 1 [Mycoplasma leachii PG50]
gi|392388904|ref|YP_005907313.1| peptide chain release factor 1 [Mycoplasma leachii 99/014/6]
gi|312949513|gb|ADR24109.1| peptide chain release factor 1 [Mycoplasma leachii PG50]
gi|339276549|emb|CBV67128.1| Peptide chain release factor 1 [Mycoplasma leachii 99/014/6]
Length = 363
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|331703153|ref|YP_004399840.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801708|emb|CBW53861.1| Peptide chain release factor 1 [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 364
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|165977491|ref|YP_001653084.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165877592|gb|ABY70640.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 333
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 157 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSA 216
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 217 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 273
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 274 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 294
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 295 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 326
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P DL+++
Sbjct: 147 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPT------DLRID 198
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 199 TYRSSGAGGQHVNTTDSAVRIT 220
>gi|420522209|ref|ZP_15020635.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11b]
gi|393130439|gb|EJC30868.1| peptide chain release factor 1 [Helicobacter pylori Hp P-11b]
Length = 316
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 147 VQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVNTTDSAV 206
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 207 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 249
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 177 VTLNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 209
>gi|323486285|ref|ZP_08091611.1| hypothetical protein HMPREF9474_03362 [Clostridium symbiosum
WAL-14163]
gi|323693924|ref|ZP_08108111.1| peptide chain release factor 1 [Clostridium symbiosum WAL-14673]
gi|355625219|ref|ZP_09048116.1| peptide chain release factor 1 [Clostridium sp. 7_3_54FAA]
gi|323400395|gb|EGA92767.1| hypothetical protein HMPREF9474_03362 [Clostridium symbiosum
WAL-14163]
gi|323502021|gb|EGB17896.1| peptide chain release factor 1 [Clostridium symbiosum WAL-14673]
gi|354821406|gb|EHF05793.1| peptide chain release factor 1 [Clostridium sp. 7_3_54FAA]
Length = 357
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST SVAV+P+ ++ +V +D+KD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTASVAVMPEAEEFDVVIDDKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI + SQ ++SQ++N+ A L+ +Y+++ E+++N+
Sbjct: 243 RLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELEKRQNQ--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE+ ++ TG + + T + R+T+HR
Sbjct: 288 ------------------------EAEERRSQI----GTGDRSEKIRTYNFPQGRVTEHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I+ T+Y + M+G L+ELI +
Sbjct: 320 IKLTLYKIDSVMNGE--LNELIDSL 342
>gi|242309130|ref|ZP_04808285.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
gi|239524171|gb|EEQ64037.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489]
Length = 356
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 77/102 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLKIEVFRAGGHGGQCVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGISV Q+++SQ KN+ AL LK IYE + E Q
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQ 282
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 20 VAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD---SAVRMTHIPTGISVE---S 73
+ VL PKD DEK++ +E + TG + D + VR G VE S
Sbjct: 93 IKVLLLPKDPN---DEKNIYLELRAGTGGDEAGIFVGDLFKAYVRYAE-SKGWKVEIISS 148
Query: 74 QEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREP 133
E+ AL K K +++E +R V+ V + ++ IH T + +A
Sbjct: 149 NENNFGGYKEVIALIKGKGAYSRLKYEGGTHR--VQRVPETESQGRIH-TSAITVAIMPE 205
Query: 134 CTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 206 VDDVE-----VVINPNDLKIEVFRAGGHGGQCVNTTDSAVRIT 243
>gi|85709577|ref|ZP_01040642.1| protein chain release factor A [Erythrobacter sp. NAP1]
gi|85688287|gb|EAQ28291.1| protein chain release factor A [Erythrobacter sp. NAP1]
Length = 355
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 74/96 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P +++V +D DLK++T RA+GAGGQHVNTTDSA+
Sbjct: 181 VQRVPVTESGGRIHTSAATVAVLPEPDEVDVQIDPGDLKIDTYRASGAGGQHVNTTDSAI 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH PTG+ V Q+ RSQ KNR A+ L+ +YE
Sbjct: 241 RITHEPTGLVVTCQDGRSQHKNREKAMQVLRARLYE 276
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 8/84 (9%)
Query: 93 LIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLK 152
+ +++FE +R VT+ R IH + + + EP V ++ DLK
Sbjct: 168 VFAKLKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPDEV------DVQIDPGDLK 219
Query: 153 VETKRATGAGGQHVNTTDSADRIT 176
++T RA+GAGGQHVNTTDSA RIT
Sbjct: 220 IDTYRASGAGGQHVNTTDSAIRIT 243
>gi|316932075|ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
gi|315599789|gb|ADU42324.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1]
Length = 361
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + ++DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQEDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 245 RITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|225848358|ref|YP_002728521.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644346|gb|ACN99396.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 360
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 77/91 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +++++ + +DLK+ET RA GAGGQHVNTTDSAV
Sbjct: 187 VQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEDLKIETMRAGGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+PTGI V+ Q++RSQ++N+ A+ L+
Sbjct: 247 RITHLPTGIVVQCQDERSQLQNKLKAMQILR 277
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ +DLK+ET RA GAGGQHVNTTDSA RIT
Sbjct: 217 IEIKPEDLKIETMRAGGAGGQHVNTTDSAVRIT 249
>gi|302384870|ref|YP_003820692.1| peptide chain release factor 1 [Clostridium saccharolyticum WM1]
gi|302195498|gb|ADL03069.1| peptide chain release factor 1 [Clostridium saccharolyticum WM1]
Length = 358
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ ++ +V +++KD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEAEEFDVVIEDKDVRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI + SQ ++SQ++N+ A L+ +Y+I+ E+++N
Sbjct: 243 RLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDIELEKRQNS--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE+ ++ TG + + T + R+TDHR
Sbjct: 288 ------------------------EAEERRSQI----GTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I+ T+Y + M+G + EL+ + D R+ +L
Sbjct: 320 IKLTLYKIDSIMNGD--IQELLDSLIAADQAVRLSKL 354
>gi|190151400|ref|YP_001969925.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303250479|ref|ZP_07336676.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251821|ref|ZP_07337992.1| Peptide chain release factor 1 (RF-1) [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307249121|ref|ZP_07531128.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251520|ref|ZP_07533427.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307256019|ref|ZP_07537807.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307262579|ref|ZP_07544210.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|238692365|sp|B3GZJ0.1|RF1_ACTP7 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|189916531|gb|ACE62783.1| Peptide chain release factor 1 (RF-1) [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649251|gb|EFL79436.1| Peptide chain release factor 1 (RF-1) [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302650467|gb|EFL80626.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306854409|gb|EFM86605.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860984|gb|EFM92990.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306865441|gb|EFM97336.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306872077|gb|EFN03790.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 360
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPT------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|32033818|ref|ZP_00134103.1| COG0216: Protein chain release factor A [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307249197|ref|ZP_07531194.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307260449|ref|ZP_07542144.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306858721|gb|EFM90780.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306869852|gb|EFN01634.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 360
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPT------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|407472714|ref|YP_006787114.1| peptide chain release factor 1 [Clostridium acidurici 9a]
gi|407049222|gb|AFS77267.1| peptide chain release factor 1 [Clostridium acidurici 9a]
Length = 355
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 105/204 (51%), Gaps = 44/204 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+++ +++ D++V+ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPATESSGRIHTSTATVAVLPEADDVDIVINQNDVRVDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V Q+++SQ+KN+ A LK +Y+ EEQ + +R ++
Sbjct: 243 RLTHTPTGIVVSCQDEKSQLKNKEKAFKILKARLYDKMIEEQN----AEIAQERKSQVGT 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
+ I + P RITDHR+
Sbjct: 299 GDRSAKIRTYNFP--------------------------------------QGRITDHRV 320
Query: 181 QRTVYNVAEFMSG--GAMLHELIS 202
TVY + F+ G ML LI+
Sbjct: 321 NLTVYKLDAFLDGDINEMLDSLIT 344
>gi|126209498|ref|YP_001054723.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126098290|gb|ABN75118.1| Peptide chain release factor 1 (RF-1) [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 333
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 157 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSA 216
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 217 VRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 273
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 274 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 294
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 295 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 326
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P P DL+++
Sbjct: 147 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPT------DLRID 198
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 199 TYRSSGAGGQHVNTTDSAVRIT 220
>gi|387126387|ref|YP_006294992.1| peptide chain release factor 1 [Methylophaga sp. JAM1]
gi|386273449|gb|AFI83347.1| Peptide chain release factor 1 [Methylophaga sp. JAM1]
Length = 362
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 108/198 (54%), Gaps = 51/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ +I ++ ++ D+K++T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAILPEADEIDQIEINPADIKMDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE QE+RSQ KNRA A++ L+ I + E+Q +
Sbjct: 246 VRITHIPTGIIVECQEERSQHKNRAKAMSVLQSRIMAAKEEKQASE-------------- 291
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKR---ATGAGGQHVNTTDSAD-RI 175
+ ET+R +G + + T + RI
Sbjct: 292 --------------------------------QAETRRLLVGSGDRSERIRTYNYPQGRI 319
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+Y + E MSG
Sbjct: 320 TDHRINLTLYKLDEVMSG 337
>gi|257064123|ref|YP_003143795.1| peptide chain release factor 1 [Slackia heliotrinireducens DSM
20476]
gi|256791776|gb|ACV22446.1| bacterial peptide chain release factor 1 (bRF-1) [Slackia
heliotrinireducens DSM 20476]
Length = 352
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ +I+V ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 180 VQRVPKTESQGRIHTSTATVAVLPEADEIDVEINENDLRIDVYRAGGPGGQCVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 240 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRSRLYEKMLAEQQ 282
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 210 VEINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 242
>gi|115522190|ref|YP_779101.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisA53]
gi|122298096|sp|Q07VB3.1|RF1_RHOP5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|115516137|gb|ABJ04121.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisA53]
Length = 359
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAV+P+ ++++V + + DLK++T RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVMPEVEEVDVEIKQDDLKIDTMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HRI T+Y + + ++G A L EL+ D DYQ
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELV-DALTTDYQ 350
>gi|103488191|ref|YP_617752.1| peptide chain release factor 1 [Sphingopyxis alaskensis RB2256]
gi|119361612|sp|Q1GPK3.1|RF1_SPHAL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|98978268|gb|ABF54419.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingopyxis
alaskensis RB2256]
Length = 355
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/101 (55%), Positives = 80/101 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V +++ DLK++ RA+GAGGQHVNTTDSA+
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEAEEVDVAINDSDLKIDIYRASGAGGQHVNTTDSAI 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEE 101
R+THIPTG+ V Q+ RSQ KNRA A+ L+ +Y+++ E+
Sbjct: 242 RITHIPTGLVVIQQDQRSQHKNRAKAMQVLRARLYDLEREK 282
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 212 VAINDSDLKIDIYRASGAGGQHVNTTDSAIRIT 244
>gi|452994950|emb|CCQ93433.1| peptide chain release factor RF-1 [Clostridium ultunense Esp]
Length = 355
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 106/194 (54%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ +DI++ +++ D++++ R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPTTESSGRIHTSTATVAVLPEAEDIDIEINQNDIRIDVFRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KNR A+ LK +Y+ EQ N
Sbjct: 243 RITHIPTGMVVSCQDEKSQHKNRDKAMKILKTRLYDQMMREQHNE--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
IA EE+ +V TG + + T + RITDHR
Sbjct: 288 -------IA-----------------EERRSQV----GTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + F+ G
Sbjct: 320 INMTLYKLENFLDG 333
>gi|188580162|ref|YP_001923607.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
gi|226739114|sp|B1Z914.1|RF1_METPB RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|179343660|gb|ACB79072.1| peptide chain release factor 1 [Methylobacterium populi BJ001]
Length = 361
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 108/197 (54%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++ ++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEEVDIAINEADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V QE+RSQ KNRA A+A L+ +++ + K SAR
Sbjct: 246 RITHMPTGVVVFVQEERSQHKNRARAMALLRSKLFDAE-----------RTAKDSARA-- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 293 ----------------------------ADRKAQV--GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGPAL 339
>gi|197104299|ref|YP_002129676.1| peptide chain release factor 1 [Phenylobacterium zucineum HLK1]
gi|196477719|gb|ACG77247.1| peptide chain release factor RF-1 [Phenylobacterium zucineum HLK1]
Length = 377
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 116/216 (53%), Gaps = 44/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + ++D++++T R++GAGGQHVN TDSAV
Sbjct: 201 VQRVPATEAQGRIHTSAATVAVLPEVEDVEIEVRDQDIRIDTYRSSGAGGQHVNKTDSAV 260
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V S E +SQ +NRA A+ LK +YE Q E ++ R +++S
Sbjct: 261 RITHLPTGIVVTSSE-KSQHQNRARAMKVLKARLYEQQREALDS---ARAESRKSQVGSG 316
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 317 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 337
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
T+YN+A+ M G A L ++I + D R+ L
Sbjct: 338 NLTLYNLAKVMEGEA-LDDVIEPLIAEDQAARLAAL 372
>gi|347530046|ref|YP_004836794.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
gi|345138728|dbj|BAK68337.1| peptide chain release factor 1 [Sphingobium sp. SYK-6]
Length = 359
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 116/218 (53%), Gaps = 46/218 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEK-DLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+ ++++V ++E DL+++ R++GAGGQHVNTTDSA
Sbjct: 182 VQRVPVTESGGRIHTSAATVAVLPEAEEVDVQINEATDLRIDVYRSSGAGGQHVNTTDSA 241
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V Q+++SQ KN+A AL L+ +YE + E
Sbjct: 242 VRITHLPTGIVVTQQDEKSQHKNKAKALKVLRARLYEAERE------------------- 282
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
RT+S R+ +G + + T + R+TDH
Sbjct: 283 --RTQSEQAGARKAMV----------------------GSGDRSERIRTYNFPQGRVTDH 318
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
RI T++ + E + G L E+IS + D R+ QL
Sbjct: 319 RINLTLHRLPEILEGPG-LDEMISALIAQDEAARLAQL 355
>gi|227513055|ref|ZP_03943104.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
gi|227083630|gb|EEI18942.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577]
Length = 361
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 83/106 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +D KD++V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++++
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQY 292
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|167031789|ref|YP_001667020.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
gi|189039985|sp|B0KNE4.1|RF1_PSEPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166858277|gb|ABY96684.1| peptide chain release factor 1 [Pseudomonas putida GB-1]
Length = 360
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + +SGG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILSGGVEAVIEPLLA-------EYQADQL 355
>gi|23012458|ref|ZP_00052537.1| COG0216: Protein chain release factor A [Magnetospirillum
magnetotacticum MS-1]
Length = 361
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V ++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEEVDVVINEADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V QE+RSQ KNRA A+A L+ +++ + K SAR
Sbjct: 246 RITHLPTGVVVFVQEERSQHKNRARAMALLRARLFDAERS-----------AKDSARA-- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 293 ----------------------------ADRKAQV--GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGPAL 339
>gi|42560702|ref|NP_975153.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|61214633|sp|Q6MU89.1|RF1_MYCMS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|42492198|emb|CAE76795.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|301320433|gb|ADK69076.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides
SC str. Gladysdale]
Length = 364
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 79/103 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++E+ + DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V SQ+ RSQ N+ A+ L+ +YE + E+Q+
Sbjct: 247 RITHLPTGIVVTSQDGRSQHDNKDIAMTMLRTKVYEAEVEKQQ 289
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 134 CTTLPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP S + + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 206 VAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|227510126|ref|ZP_03940175.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190331|gb|EEI70398.1| peptide chain release factor 1 [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 357
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 83/106 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +D KD++V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++++
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQY 292
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|365853802|ref|ZP_09394067.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
gi|363711960|gb|EHL95666.1| peptide chain release factor 1 [Lactobacillus parafarraginis F0439]
Length = 361
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 83/106 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +D KD++V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++++
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYSQQEQDQY 292
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|363543169|ref|NP_001241798.1| peptide chain release factor 1 [Zea mays]
gi|195650889|gb|ACG44912.1| peptide chain release factor 1 [Zea mays]
Length = 356
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 182 VQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 242 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 279
Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 212 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 244
>gi|413917590|gb|AFW57522.1| peptide chain release factor 1 [Zea mays]
Length = 368
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 194 VQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 253
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 254 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 291
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 224 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 256
>gi|409408061|ref|ZP_11256505.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
gi|386432517|gb|EIJ45344.1| peptide chain release factor 1 [Herbaspirillum sp. GW103]
Length = 355
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V ++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 180 VQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSA 239
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I ++Q EQ+++
Sbjct: 240 VRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSK 285
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 211 VDINPADLRIDTYRASGAGGQHINKTDSAVRIT 243
>gi|153814377|ref|ZP_01967045.1| hypothetical protein RUMTOR_00587 [Ruminococcus torques ATCC 27756]
gi|317500091|ref|ZP_07958326.1| peptide chain release factor 1 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087685|ref|ZP_08336611.1| peptide chain release factor 1 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438107|ref|ZP_08617748.1| peptide chain release factor 1 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145848773|gb|EDK25691.1| peptide chain release factor 1 [Ruminococcus torques ATCC 27756]
gi|316898576|gb|EFV20612.1| peptide chain release factor 1 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409666|gb|EGG89102.1| peptide chain release factor 1 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336015151|gb|EGN44975.1| peptide chain release factor 1 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 356
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VA++P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAIMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH PTGI + SQ ++SQ++N+ A L+ +Y+++ E+Q+
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKQQ 285
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|54288338|gb|AAV31626.1| predicted protein chain release factor A [uncultured alpha
proteobacterium EBAC2C11]
Length = 335
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ +DE DL+V+ RA+G GGQ VNTTDSAV
Sbjct: 185 VQRVPETEAGGRIHTSAATVAVLPEAEDVDIRIDESDLRVDVFRASGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTGI V Q+++SQ KNRA A+ L+ IY+ +
Sbjct: 245 RITHLPTGIVVSQQDEKSQHKNRAKAMKILRARIYDAE 282
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++E DL+V+ RA+G GGQ VNTTDSA RIT
Sbjct: 215 IRIDESDLRVDVFRASGPGGQSVNTTDSAVRIT 247
>gi|118581059|ref|YP_902309.1| peptide chain release factor 1 [Pelobacter propionicus DSM 2379]
gi|166223584|sp|A1ASD1.1|RF1_PELPD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|118503769|gb|ABL00252.1| bacterial peptide chain release factor 1 (bRF-1) [Pelobacter
propionicus DSM 2379]
Length = 354
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VA++ + +D+++ ++ DLK++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPTDLKIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG V QE+RSQIKNRA A+ LK I + +EQ R
Sbjct: 240 RITHLPTGTVVACQEERSQIKNRAKAMKVLKTRIMDSIQQEQNAR--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------MAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M+G + E++ +R H YQ
Sbjct: 315 HRIGLTLYRLDAIMAGD--IAEIVDALRAH-YQM 345
>gi|331085530|ref|ZP_08334614.1| peptide chain release factor 1 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407417|gb|EGG86919.1| peptide chain release factor 1 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 358
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V ++EKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIEEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 286
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V +EEKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIEEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|386010393|ref|YP_005928670.1| protein PrfA [Pseudomonas putida BIRD-1]
gi|395447154|ref|YP_006387407.1| PrfA [Pseudomonas putida ND6]
gi|397693751|ref|YP_006531631.1| peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|421524618|ref|ZP_15971239.1| peptide chain release factor 1 [Pseudomonas putida LS46]
gi|313497099|gb|ADR58465.1| PrfA [Pseudomonas putida BIRD-1]
gi|388561151|gb|AFK70292.1| PrfA [Pseudomonas putida ND6]
gi|397330481|gb|AFO46840.1| Peptide chain release factor 1 [Pseudomonas putida DOT-T1E]
gi|402751081|gb|EJX11594.1| peptide chain release factor 1 [Pseudomonas putida LS46]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + +SGG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILSGGVDAVIEPLLA-------EYQADQL 355
>gi|290969299|ref|ZP_06560824.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str.
28L]
gi|290780805|gb|EFD93408.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str.
28L]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ D+E+ LD KD++V+ RA+GAGGQH+N T SAV
Sbjct: 186 VQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRVDYFRASGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI 94
RMTH+P+GI VE Q++RSQ++NR AL LK RL+
Sbjct: 246 RMTHMPSGIVVECQDERSQLENRTKALRVLKARLL 280
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ RA+GAGGQH+N T SA R+T
Sbjct: 216 IDLDMKDVRVDYFRASGAGGQHINKTSSAVRMT 248
>gi|227524270|ref|ZP_03954319.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
gi|227088501|gb|EEI23813.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290]
Length = 361
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 83/106 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +D KD++V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++++
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQY 292
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|254472406|ref|ZP_05085806.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|374328358|ref|YP_005078542.1| peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
gi|211958689|gb|EEA93889.1| peptide chain release factor 1 [Pseudovibrio sp. JE062]
gi|359341146|gb|AEV34520.1| Peptide chain release factor 1 [Pseudovibrio sp. FO-BEG1]
Length = 357
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 80/104 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLPQ ++++V ++ DL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSAATVAVLPQAEEVDVDINPADLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI V Q++RSQ KN+ A+ L+ IY+++ E N
Sbjct: 243 RITHNPTGIVVAVQDERSQHKNKDRAMKLLRAKIYDVERERAAN 286
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 213 VDINPADLRIDTYRASGAGGQHVNTTDSAVRIT 245
>gi|188996904|ref|YP_001931155.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931971|gb|ACD66601.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 113/202 (55%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTSTV+VAVLP+ +++++ + ++LK+ET RA GAGGQHVNTTDSAV
Sbjct: 187 VQRVPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELKIETMRAGGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ++N+ A+ L+ RL +
Sbjct: 247 RITHIPTGMVVTCQDERSQLQNKMKAMQILR----------------ARL------KDYY 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R E IA +E+ +V TG + + T + +R+TDHR
Sbjct: 285 ERLEKEKIA-----------------KERKEQV----GTGERSEKIRTYNFPQNRVTDHR 323
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
+ T Y + + M G L E+I
Sbjct: 324 VNYTSYRINDIMDGD--LDEII 343
>gi|413917589|gb|AFW57521.1| hypothetical protein ZEAMMB73_731523 [Zea mays]
Length = 285
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 111 VQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 170
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 171 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 208
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 141 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 173
>gi|408380658|ref|ZP_11178240.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
gi|407745434|gb|EKF56968.1| peptide chain release factor 1 [Agrobacterium albertimagni AOL15]
Length = 359
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 114/206 (55%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +DI++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETEASGRIHTSAATVAVLPEAEDIDIEIKPEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA AL L+ +Y+I+
Sbjct: 245 RITHLPTGLIVTSSE-KSQHQNRAKALQVLRSRLYDIER--------------------- 282
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H+ +S E+ +++ +G + + T + R+TDHR
Sbjct: 283 HKLDS----------------------ERSANRKSQVGSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELISD 203
I T+Y + + G ML LISD
Sbjct: 321 INLTLYKLDRMIEGDLDEMLDALISD 346
>gi|325273244|ref|ZP_08139524.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
gi|324101621|gb|EGB99187.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + +SGG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILSGGVDAVIEPLLA-------EYQADQL 355
>gi|385215355|ref|YP_005775311.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|420493433|ref|ZP_14992004.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
gi|317179883|dbj|BAJ57669.1| peptide chain release factor 1 [Helicobacter pylori F32]
gi|393112689|gb|EJC13209.1| peptide chain release factor 1 [Helicobacter pylori Hp P-16]
Length = 352
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|224035189|gb|ACN36670.1| unknown [Zea mays]
Length = 301
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 127 VQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 186
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 187 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 224
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 157 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 189
>gi|335049819|ref|ZP_08542803.1| peptide chain release factor 1 [Megasphaera sp. UPII 199-6]
gi|333762096|gb|EGL39608.1| peptide chain release factor 1 [Megasphaera sp. UPII 199-6]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/95 (62%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ D+E+ LD KD++V+ RA+GAGGQH+N T SAV
Sbjct: 186 VQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRVDYFRASGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI 94
RMTH+P+GI VE Q++RSQ++NR AL LK RL+
Sbjct: 246 RMTHMPSGIVVECQDERSQLENRTKALRVLKARLL 280
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ RA+GAGGQH+N T SA R+T
Sbjct: 216 IDLDMKDVRVDYFRASGAGGQHINKTSSAVRMT 248
>gi|325660746|ref|ZP_08149374.1| peptide chain release factor 1 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472820|gb|EGC76030.1| peptide chain release factor 1 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 356
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 84/104 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V ++EKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIEEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH PTGI + SQ ++SQ++N+ A L+ +YE++ E+Q++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQS 286
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V +EEKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIEEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|148546007|ref|YP_001266109.1| peptide chain release factor 1 [Pseudomonas putida F1]
gi|166223590|sp|A5VYG5.1|RF1_PSEP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|148510065|gb|ABQ76925.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas
putida F1]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIASERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + +SGG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILSGGVDAVIEPLLA-------EYQADQL 355
>gi|420457948|ref|ZP_14956758.1| peptide chain release factor 1 [Helicobacter pylori Hp A-26]
gi|393075469|gb|EJB76223.1| peptide chain release factor 1 [Helicobacter pylori Hp A-26]
Length = 352
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|351710127|gb|EHB13046.1| Peptide chain release factor 1, mitochondrial [Heterocephalus
glaber]
Length = 446
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 112/210 (53%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D +D++++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDHRDVRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ HIPTGI VE Q++RSQIKN+ A L+ +Y+ E+ + ++SAR
Sbjct: 321 SAVRLVHIPTGIVVECQQERSQIKNKEIAFHVLRTRLYQEIIEKDK-------CQQQSAR 373
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T + + T + + DR+T
Sbjct: 374 KL------------------------------------QVGTRTQSERIRTYNFTQDRVT 397
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI + ++ EF+ G L +LI + Q
Sbjct: 398 DHRIAYEIRDIKEFLCGEKCLDQLIQRLLQ 427
>gi|322513486|ref|ZP_08066596.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976]
gi|322120705|gb|EFX92589.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976]
Length = 360
Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A AL+ L I ++ EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALSVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P RITDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRITDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|421720989|ref|ZP_16160266.1| peptide chain release factor 1 [Helicobacter pylori R055a]
gi|407225773|gb|EKE95543.1| peptide chain release factor 1 [Helicobacter pylori R055a]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|406670553|ref|ZP_11077798.1| peptide chain release factor 1 [Facklamia hominis CCUG 36813]
gi|405582069|gb|EKB56075.1| peptide chain release factor 1 [Facklamia hominis CCUG 36813]
Length = 358
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 116/218 (53%), Gaps = 48/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +V V+P+ ++++ LDE D++V+ A+GAGGQHVN T SAV
Sbjct: 183 VQRVPETESQGRVHTSTATVVVMPEQEELDFDLDENDIRVDIYHASGAGGQHVNKTASAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY-EIQFEEQENRWVVRLVTKRSARTI 119
RMTHIPTGI V Q++RSQ+KNR A+ L+ +Y E+Q E QE
Sbjct: 243 RMTHIPTGIVVAMQDERSQLKNREKAMKVLRTRVYDELQSERQE---------------- 286
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
AF D K + TG + + T + +R+TDH
Sbjct: 287 ---------AF-------------------DSKRKLAVGTGDRSERIRTYNYPQNRVTDH 318
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
RI T+ + M G L E+I+ + +D ++++L
Sbjct: 319 RIGLTIQQLDSIMQGN--LDEIINALVLYDQAQKLEEL 354
>gi|359786973|ref|ZP_09290046.1| peptide chain release factor 1 [Halomonas sp. GFAJ-1]
gi|359295739|gb|EHK60001.1| peptide chain release factor 1 [Halomonas sp. GFAJ-1]
Length = 362
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 115/215 (53%), Gaps = 53/215 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D+ ++ ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVMPEVDDVGDIDINPSDLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+TH+P+G+ VE QE+RSQ KNRA A+ AKLKR + Q +EQ + +RS
Sbjct: 246 IRITHLPSGVVVECQEERSQHKNRAKAMSLLAAKLKRNAVDSQRQEQAD-------ARRS 298
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R+E R P RI
Sbjct: 299 LVGSGDRSE------RIRTYNFPQG---------------------------------RI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
TDHRI T+Y + E +S G L E+I + H+YQ
Sbjct: 320 TDHRINLTLYKLTEVVS-GEQLDEVIEPL-IHEYQ 352
>gi|385224770|ref|YP_005784695.1| peptide chain release factor RF1 [Helicobacter pylori 83]
gi|385248583|ref|YP_005776802.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|317181378|dbj|BAJ59162.1| peptide chain release factor 1 [Helicobacter pylori F57]
gi|332672916|gb|AEE69733.1| peptide chain release factor RF1 [Helicobacter pylori 83]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|385221579|ref|YP_005770712.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
gi|317010358|gb|ADU84105.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|313893571|ref|ZP_07827140.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441842|gb|EFR60265.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str.
F0412]
Length = 360
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ ++EKDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+PTGI V Q+ RSQ+KN+ A+ L+
Sbjct: 245 RITHLPTGIVVACQDQRSQLKNKDKAMRVLR 275
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 215 IEVNEKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|425788711|ref|YP_007016631.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
gi|425627026|gb|AFX90494.1| peptide chain release factor 1 [Helicobacter pylori Aklavik117]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420411425|ref|ZP_14910557.1| peptide chain release factor 1 [Helicobacter pylori NQ4228]
gi|393030214|gb|EJB31293.1| peptide chain release factor 1 [Helicobacter pylori NQ4228]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420395969|ref|ZP_14895193.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|420396807|ref|ZP_14896025.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
gi|393012181|gb|EJB13364.1| peptide chain release factor 1 [Helicobacter pylori CPY1124]
gi|393012469|gb|EJB13647.1| peptide chain release factor 1 [Helicobacter pylori CPY1313]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384893686|ref|YP_005767735.1| peptide chain release factor 1 [Helicobacter pylori Sat464]
gi|308062940|gb|ADO04827.1| peptide chain release factor 1 [Helicobacter pylori Sat464]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|210134282|ref|YP_002300721.1| peptide chain release factor 1 [Helicobacter pylori P12]
gi|238058714|sp|B6JPI0.1|RF1_HELP2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|210132250|gb|ACJ07241.1| peptide chain release factor RF-1 [Helicobacter pylori P12]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420498637|ref|ZP_14997194.1| peptide chain release factor 1 [Helicobacter pylori Hp P-26]
gi|393152616|gb|EJC52912.1| peptide chain release factor 1 [Helicobacter pylori Hp P-26]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386745600|ref|YP_006218817.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
gi|384551849|gb|AFI06797.1| peptide chain release factor 1 [Helicobacter pylori HUP-B14]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420398142|ref|ZP_14897355.1| peptide chain release factor 1 [Helicobacter pylori CPY1962]
gi|393014816|gb|EJB15987.1| peptide chain release factor 1 [Helicobacter pylori CPY1962]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386753588|ref|YP_006226806.1| peptide chain release factor 1 [Helicobacter pylori Shi112]
gi|384559846|gb|AFI00313.1| peptide chain release factor 1 [Helicobacter pylori Shi112]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|345016594|ref|YP_004818947.1| hypothetical protein Thewi_0154 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344031937|gb|AEM77663.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_0154
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 356
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+K++ R+ G GGQ VNTTDSAV
Sbjct: 182 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 285 ----------REIAETRKSQV----------------GTGERSERIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYRLQEVLDGD--LDEIIDALILND 345
>gi|385219943|ref|YP_005781415.1| peptide chain release factor 1 [Helicobacter pylori India7]
gi|317008750|gb|ADU79330.1| peptide chain release factor 1 [Helicobacter pylori India7]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|208434043|ref|YP_002265709.1| peptide chain release factor 1 [Helicobacter pylori G27]
gi|238058715|sp|B5Z680.1|RF1_HELPG RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|208431972|gb|ACI26843.1| peptide chain release factor RF-1 [Helicobacter pylori G27]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420495159|ref|ZP_14993724.1| peptide chain release factor 1 [Helicobacter pylori Hp P-23]
gi|393113292|gb|EJC13811.1| peptide chain release factor 1 [Helicobacter pylori Hp P-23]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420420826|ref|ZP_14919910.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
gi|393035625|gb|EJB36669.1| peptide chain release factor 1 [Helicobacter pylori NQ4161]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384892075|ref|YP_005766168.1| peptide chain release factor 1 [Helicobacter pylori Cuz20]
gi|308061372|gb|ADO03260.1| peptide chain release factor 1 [Helicobacter pylori Cuz20]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|217034576|ref|ZP_03439984.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
gi|216942931|gb|EEC22416.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|28210063|ref|NP_781007.1| peptide chain release factor 1 [Clostridium tetani E88]
gi|32171526|sp|Q898Y5.1|RF1_CLOTE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|28202498|gb|AAO34944.1| bacterial peptide chain release factor 1 [Clostridium tetani E88]
Length = 355
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ +D++V +++ DL+V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATVAVLPEVEDVDVEINQNDLRVDVYRASGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V Q+++SQ+KN+ A+ LK +Y++ L ++RSA
Sbjct: 243 RITHLPSGLVVTCQDEKSQLKNKEKAMKVLKSRLYDM------------LESERSASIAE 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
R +++ TG + + T + R+TDHR
Sbjct: 291 DR-------------------------------KSQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + F+ G
Sbjct: 320 IGLTLYKLESFLDG 333
>gi|420446379|ref|ZP_14945276.1| peptide chain release factor 1 [Helicobacter pylori Hp H-43]
gi|393065251|gb|EJB66080.1| peptide chain release factor 1 [Helicobacter pylori Hp H-43]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|386752059|ref|YP_006225278.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
gi|384558317|gb|AFH98784.1| peptide chain release factor 1 [Helicobacter pylori Shi169]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384888733|ref|YP_005763035.1| peptide chain release factor 1 [Helicobacter pylori v225d]
gi|297379299|gb|ADI34186.1| peptide chain release factor 1 [Helicobacter pylori v225d]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|217033144|ref|ZP_03438604.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128]
gi|298736978|ref|YP_003729508.1| peptide chain release factor RF-1 [Helicobacter pylori B8]
gi|216945129|gb|EEC23827.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128]
gi|298356172|emb|CBI67044.1| peptide chain release factor RF-1 [Helicobacter pylori B8]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|15644707|ref|NP_206877.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|383749136|ref|YP_005424239.1| peptide chain release factor 1 [Helicobacter pylori ELS37]
gi|410023311|ref|YP_006892564.1| peptide chain release factor 1 [Helicobacter pylori Rif1]
gi|410501080|ref|YP_006935607.1| peptide chain release factor 1 [Helicobacter pylori Rif2]
gi|410681597|ref|YP_006933999.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|419416126|ref|ZP_13956709.1| peptide chain release factor 1 [Helicobacter pylori P79]
gi|2500136|sp|P55998.1|RF1_HELPY RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|2313158|gb|AAD07148.1| peptide chain release factor RF-1 (prfA) [Helicobacter pylori
26695]
gi|380873882|gb|AFF19663.1| peptide chain release factor 1 [Helicobacter pylori ELS37]
gi|384375651|gb|EIE30920.1| peptide chain release factor 1 [Helicobacter pylori P79]
gi|409893238|gb|AFV41296.1| peptide chain release factor 1 [Helicobacter pylori 26695]
gi|409894968|gb|AFV42890.1| peptide chain release factor 1 [Helicobacter pylori Rif1]
gi|409896631|gb|AFV44485.1| peptide chain release factor 1 [Helicobacter pylori Rif2]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|15611143|ref|NP_222794.1| peptide chain release factor 1 [Helicobacter pylori J99]
gi|7388059|sp|Q9ZMZ0.1|RF1_HELPJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|4154581|gb|AAD05656.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|421720741|ref|ZP_16160021.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
gi|407219333|gb|EKE89150.1| peptide chain release factor 1 [Helicobacter pylori R046Wa]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|421711082|ref|ZP_16150426.1| peptide chain release factor 1 [Helicobacter pylori R030b]
gi|407213287|gb|EKE83145.1| peptide chain release factor 1 [Helicobacter pylori R030b]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|398826725|ref|ZP_10584962.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
gi|398220670|gb|EJN07113.1| peptide chain release factor 1 [Bradyrhizobium sp. YR681]
Length = 361
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 48/199 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVEIKNDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q R+ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RINAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAM 196
HRI T+Y + + ++G A+
Sbjct: 320 HRINLTLYKLPQVIAGEAL 338
>gi|420414576|ref|ZP_14913694.1| peptide chain release factor 1 [Helicobacter pylori NQ4053]
gi|393034818|gb|EJB35871.1| peptide chain release factor 1 [Helicobacter pylori NQ4053]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420402818|ref|ZP_14902006.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
gi|393016285|gb|EJB17445.1| peptide chain release factor 1 [Helicobacter pylori CPY6081]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|387781776|ref|YP_005792489.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
gi|261837535|gb|ACX97301.1| peptide chain release factor RF-1 [Helicobacter pylori 51]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|167038490|ref|YP_001666068.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|320116886|ref|YP_004187045.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|238687641|sp|B0K7G6.1|RF1_THEP3 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|166857324|gb|ABY95732.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus
ATCC 33223]
gi|319929977|gb|ADV80662.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 356
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+K++ R+ G GGQ VNTTDSAV
Sbjct: 182 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKIDVFRSGGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 285 ----------REIAETRKSQV----------------GTGERSERIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYRLQEVLDGD--LDEIIDALILND 345
>gi|420406208|ref|ZP_14905379.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
gi|393024229|gb|EJB25340.1| peptide chain release factor 1 [Helicobacter pylori CPY6311]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|385229393|ref|YP_005789309.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
gi|344335831|gb|AEN17792.1| peptide chain release factor 1 [Helicobacter pylori Puno135]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|207091639|ref|ZP_03239426.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_AG0C1]
gi|419418273|ref|ZP_13958616.1| peptide chain release factor 1 [Helicobacter pylori NCTC 11637 =
CCUG 17874]
gi|384374462|gb|EIE29854.1| peptide chain release factor 1 [Helicobacter pylori NCTC 11637 =
CCUG 17874]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|403387543|ref|ZP_10929600.1| peptide chain release factor 1 [Clostridium sp. JC122]
Length = 359
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 109/205 (53%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST ++AVLP+ D+++ ++ DLK++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPDTESSGRIHTSTATIAVLPEVDDVDIEINANDLKIDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTG+ V Q+++SQ+KN+ AL L+ +YE Q E +RSA
Sbjct: 243 RMTHLPTGLVVSCQDEKSQLKNKEKALKILRARLYE-QAE-----------AERSAGIAE 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
R + TG + + T + R+TDHR
Sbjct: 291 DR-------------------------------RNQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSG--GAMLHELIS 202
I T+Y + F+ G ML+ LI+
Sbjct: 320 IGLTLYKLESFLDGDIDEMLNALIT 344
>gi|420443080|ref|ZP_14942009.1| peptide chain release factor 1 [Helicobacter pylori Hp H-41]
gi|393061485|gb|EJB62350.1| peptide chain release factor 1 [Helicobacter pylori Hp H-41]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384899588|ref|YP_005774968.1| peptide chain release factor 1 [Helicobacter pylori F30]
gi|317179532|dbj|BAJ57320.1| peptide chain release factor 1 [Helicobacter pylori F30]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|385216848|ref|YP_005778324.1| peptide chain release factor 1 [Helicobacter pylori F16]
gi|317176897|dbj|BAJ54686.1| peptide chain release factor 1 [Helicobacter pylori F16]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|108562503|ref|YP_626819.1| peptide chain release factor 1 [Helicobacter pylori HPAG1]
gi|119361549|sp|Q1CV77.1|RF1_HELPH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|107836276|gb|ABF84145.1| peptide chain release factor RF-1 [Helicobacter pylori HPAG1]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|421714241|ref|ZP_16153562.1| peptide chain release factor 1 [Helicobacter pylori R036d]
gi|421716135|ref|ZP_16155447.1| peptide chain release factor 1 [Helicobacter pylori R037c]
gi|421717631|ref|ZP_16156933.1| peptide chain release factor 1 [Helicobacter pylori R038b]
gi|407217926|gb|EKE87755.1| peptide chain release factor 1 [Helicobacter pylori R036d]
gi|407222033|gb|EKE91836.1| peptide chain release factor 1 [Helicobacter pylori R037c]
gi|407223138|gb|EKE92931.1| peptide chain release factor 1 [Helicobacter pylori R038b]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|421713596|ref|ZP_16152927.1| peptide chain release factor 1 [Helicobacter pylori R32b]
gi|407216962|gb|EKE86799.1| peptide chain release factor 1 [Helicobacter pylori R32b]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420466393|ref|ZP_14965150.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
gi|393084791|gb|EJB85479.1| peptide chain release factor 1 [Helicobacter pylori Hp H-9]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420434965|ref|ZP_14933965.1| peptide chain release factor 1 [Helicobacter pylori Hp H-27]
gi|420505507|ref|ZP_15004023.1| peptide chain release factor 1 [Helicobacter pylori Hp P-74]
gi|393052733|gb|EJB53679.1| peptide chain release factor 1 [Helicobacter pylori Hp H-27]
gi|393117039|gb|EJC17543.1| peptide chain release factor 1 [Helicobacter pylori Hp P-74]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|194468250|ref|ZP_03074236.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
gi|194453103|gb|EDX42001.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23]
Length = 362
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDY-YQQQE 289
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KD++V+ R++GAGGQHVN T SA R+T
Sbjct: 218 VDIDPKDIRVDVYRSSGAGGQHVNKTSSAVRMT 250
>gi|20806672|ref|NP_621843.1| peptide chain release factor 1 [Thermoanaerobacter tengcongensis
MB4]
gi|22096035|sp|Q8RD98.1|RF1_THETN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|20515122|gb|AAM23447.1| Protein chain release factor A [Thermoanaerobacter tengcongensis
MB4]
Length = 356
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 112/209 (53%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ ++++V ++ D+K++ R++G GGQ VNTTDSAV
Sbjct: 182 VQRIPTTEAGGRIHTSTATVAVLPEAEEVDVEINPNDIKIDVFRSSGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+ R I
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALKEQQ-------------REIA 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+S + TG + + T + R+TDHR
Sbjct: 289 EARKSQV------------------------------GTGERSERIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYKLQEVLDG--ELDEIIDALILND 345
>gi|420503640|ref|ZP_15002170.1| peptide chain release factor 1 [Helicobacter pylori Hp P-62]
gi|393155029|gb|EJC55306.1| peptide chain release factor 1 [Helicobacter pylori Hp P-62]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420491997|ref|ZP_14990573.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|420525764|ref|ZP_15024167.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
gi|393108692|gb|EJC09226.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15]
gi|393133785|gb|EJC34201.1| peptide chain release factor 1 [Helicobacter pylori Hp P-15b]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420464766|ref|ZP_14963533.1| peptide chain release factor 1 [Helicobacter pylori Hp H-6]
gi|393082253|gb|EJB82969.1| peptide chain release factor 1 [Helicobacter pylori Hp H-6]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420421457|ref|ZP_14920535.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
gi|393037975|gb|EJB39009.1| peptide chain release factor 1 [Helicobacter pylori NQ4110]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420411081|ref|ZP_14910217.1| peptide chain release factor 1 [Helicobacter pylori NQ4200]
gi|393026294|gb|EJB27394.1| peptide chain release factor 1 [Helicobacter pylori NQ4200]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|385227845|ref|YP_005787778.1| peptide chain release factor 1 [Helicobacter pylori Puno120]
gi|344334283|gb|AEN14727.1| peptide chain release factor 1 [Helicobacter pylori Puno120]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|148543687|ref|YP_001271057.1| peptide chain release factor 1 [Lactobacillus reuteri DSM 20016]
gi|227363334|ref|ZP_03847463.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227544508|ref|ZP_03974557.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|325682058|ref|ZP_08161576.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|338204026|ref|YP_004650171.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
gi|148530721|gb|ABQ82720.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus
reuteri DSM 20016]
gi|227071641|gb|EEI09935.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3]
gi|227185531|gb|EEI65602.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A]
gi|324978702|gb|EGC15651.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A]
gi|336449266|gb|AEI57881.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112]
Length = 362
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDY-YQQQE 289
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KD++V+ R++GAGGQHVN T SA R+T
Sbjct: 218 VDIDPKDIRVDVYRSSGAGGQHVNKTSSAVRMT 250
>gi|444374452|ref|ZP_21173758.1| peptide chain release factor 1 [Helicobacter pylori A45]
gi|443621107|gb|ELT81547.1| peptide chain release factor 1 [Helicobacter pylori A45]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|162147699|ref|YP_001602160.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542323|ref|YP_002274552.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
gi|189039975|sp|A9HJ50.1|RF1_GLUDA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|161786276|emb|CAP55858.1| putative peptide chain release factor 1 [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530000|gb|ACI49937.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus
PAl 5]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 76/96 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ D++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAGDVDVQINDGDLRIDVYRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTG+ V QE++SQ KNRA A+ L +YE
Sbjct: 239 RITHLPTGLVVAMQEEKSQHKNRAKAMKILMARLYE 274
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 134 CTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + V + + DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 198 VAVLPEAGDVDVQINDGDLRIDVYRASGAGGQHVNKTESAVRIT 241
>gi|449280319|gb|EMC87646.1| Peptide chain release factor 1, mitochondrial, partial [Columba
livia]
Length = 409
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 112/206 (54%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+T S R+ HT T+SV VLPQP++++V +D KDL+++T RA GAGGQHVN TD
Sbjct: 227 VQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTD 286
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG++VE Q++RSQ N+ AL L+ +Y+ E+Q L ++SAR
Sbjct: 287 SAVRIVHLPTGLAVECQQERSQQLNKEMALRTLRAKLYQQVIEKQ-------LSQEQSAR 339
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 340 KL------------------------------------QLGTRAQSERIRTYNFTQDRVT 363
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELIS 202
DHRI N+ E + G L +LI+
Sbjct: 364 DHRISYEARNIKEILCGKEALDKLIN 389
>gi|420412943|ref|ZP_14912068.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
gi|393030704|gb|EJB31782.1| peptide chain release factor 1 [Helicobacter pylori NQ4099]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|308182253|ref|YP_003926380.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|420426270|ref|ZP_14925326.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
gi|308064438|gb|ADO06330.1| peptide chain release factor 1 [Helicobacter pylori PeCan4]
gi|393044990|gb|EJB45980.1| peptide chain release factor 1 [Helicobacter pylori Hp A-9]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420451240|ref|ZP_14950094.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
gi|393065172|gb|EJB66002.1| peptide chain release factor 1 [Helicobacter pylori Hp H-45]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420436481|ref|ZP_14935474.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|420459550|ref|ZP_14958350.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
gi|393054792|gb|EJB55716.1| peptide chain release factor 1 [Helicobacter pylori Hp H-28]
gi|393077634|gb|EJB78382.1| peptide chain release factor 1 [Helicobacter pylori Hp A-27]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|373465770|ref|ZP_09557214.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
gi|371759372|gb|EHO48110.1| peptide chain release factor 1 [Lactobacillus kisonensis F0435]
Length = 361
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 83/106 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +D KD++V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++++
Sbjct: 247 RMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYSQQEQDQY 292
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|384896816|ref|YP_005772244.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
gi|317011921|gb|ADU82529.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|184153097|ref|YP_001841438.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|423335983|ref|ZP_17313734.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
gi|238058717|sp|B2G676.1|RF1_LACRJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|183224441|dbj|BAG24958.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112]
gi|337729186|emb|CCC04310.1| peptide chain release factor 1 [Lactobacillus reuteri ATCC 53608]
Length = 360
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 186 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++QE
Sbjct: 246 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDY-YQQQE 287
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KD++V+ R++GAGGQHVN T SA R+T
Sbjct: 216 VDIDPKDIRVDVYRSSGAGGQHVNKTSSAVRMT 248
>gi|399117370|emb|CCG20185.1| peptide chain release factor [Taylorella asinigenitalis 14/45]
Length = 359
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 45/195 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAV+P+ ++ EV L+ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPETESQGRVHTSACTVAVMPEADELAEVVLNPADLRIDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI E Q+DRSQ KN+A A++ L I +IQ +EQ+++
Sbjct: 244 VRITHIPTGIVAECQDDRSQHKNKARAMSVLAARINDIQRQEQQSKEAA----------- 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E K L TG + + T + R+TDH
Sbjct: 293 ---------------------------ERKSLV-----GTGDRSERIRTYNYPQGRVTDH 320
Query: 179 RIQRTVYNVAEFMSG 193
RI T+Y + + M G
Sbjct: 321 RINLTLYKLPQIMEG 335
>gi|423097283|ref|ZP_17085079.1| peptide chain release factor 1 [Pseudomonas fluorescens Q2-87]
gi|397884652|gb|EJL01135.1| peptide chain release factor 1 [Pseudomonas fluorescens Q2-87]
Length = 360
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A+A L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMAWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|182420270|ref|ZP_02951499.1| peptide chain release factor 1 [Clostridium butyricum 5521]
gi|237666557|ref|ZP_04526542.1| peptide chain release factor 1 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182375865|gb|EDT73457.1| peptide chain release factor 1 [Clostridium butyricum 5521]
gi|237657756|gb|EEP55311.1| peptide chain release factor 1 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 360
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+ + EKDL+++ RA+G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTESSGRIHTSTSTVAVLPEVDDVEIEISEKDLRIDVFRASGNGGQCVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V Q+++SQ+KN+ A+ LK +YE Q E + A I
Sbjct: 244 RITHLPSGLVVSCQDEKSQLKNKEKAMKVLKSRLYE-QAE------------RERAEGIA 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+S + TG + + T + R+TDHR
Sbjct: 291 EDRKSQV------------------------------GTGDRSERIRTYNYPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELIS 202
I T+Y + F++G M++ LI+
Sbjct: 321 IGLTLYKLETFLNGDIDEMINALIT 345
>gi|226492409|ref|NP_001142228.1| uncharacterized protein LOC100274396 [Zea mays]
gi|194707706|gb|ACF87937.1| unknown [Zea mays]
gi|413917591|gb|AFW57523.1| peptide chain release factor 1 [Zea mays]
Length = 416
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 242 VQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 301
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 302 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 339
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 272 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 304
>gi|420422962|ref|ZP_14922036.1| peptide chain release factor 1 [Helicobacter pylori Hp A-4]
gi|393042913|gb|EJB43918.1| peptide chain release factor 1 [Helicobacter pylori Hp A-4]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|374287419|ref|YP_005034504.1| peptide chain release factor 1 [Bacteriovorax marinus SJ]
gi|301165960|emb|CBW25534.1| peptide chain release factor 1 [Bacteriovorax marinus SJ]
Length = 357
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 77/102 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST++VAV+P+ D+E LD D++++ R+ GAGGQ VNTTDSAV
Sbjct: 184 VQRVPKTESQGRVHTSTITVAVMPETDDVEFDLDMNDVRIDVYRSGGAGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTG V +Q+ +SQ+KN+ AL LK IY+ +E+
Sbjct: 244 RVTHIPTGTVVANQDQKSQLKNKEKALRILKNRIYDKMLQEK 285
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
L+ D++++ R+ GAGGQ VNTTDSA R+T
Sbjct: 216 LDMNDVRIDVYRSGGAGGQSVNTTDSAVRVT 246
>gi|339485721|ref|YP_004700249.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|431800788|ref|YP_007227691.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
gi|338836564|gb|AEJ11369.1| peptide chain release factor 1 [Pseudomonas putida S16]
gi|430791553|gb|AGA71748.1| peptide chain release factor 1 [Pseudomonas putida HB3267]
Length = 360
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A++ L + ++Q +N
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQN--------------- 290
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
A+ E K L +G + + T + R+TDH
Sbjct: 291 -----------------------AIATERKLLV-----GSGDRSERIRTYNYPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ + ++GG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDDILAGGVEAVIEPLLA-------EYQADQL 355
>gi|238917365|ref|YP_002930882.1| peptide chain release factor RF-1 [Eubacterium eligens ATCC 27750]
gi|259585239|sp|C4Z1S4.1|RF1_EUBE2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|238872725|gb|ACR72435.1| peptide chain release factor RF-1 [Eubacterium eligens ATCC 27750]
Length = 357
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GR+ TST SVAV+P+ +++++H+DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPVTESNGRIQTSTASVAVMPEAEEVDIHIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH PTGI + SQ ++SQI+N+ A A L+ +Y+I+
Sbjct: 243 RLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDIE 280
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
+H++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 IHIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|225548553|ref|ZP_03769601.1| peptide chain release factor 1 [Borrelia burgdorferi 94a]
gi|225370816|gb|EEH00251.1| peptide chain release factor 1 [Borrelia burgdorferi 94a]
Length = 357
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|27375329|ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
gi|32171530|sp|Q89XT9.1|RF1_BRAJA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|27348465|dbj|BAC45483.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110]
Length = 361
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 110/204 (53%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|386747730|ref|YP_006220938.1| peptide chain release factor 1 [Helicobacter cetorum MIT 99-5656]
gi|384553972|gb|AFI05728.1| peptide chain release factor 1 [Helicobacter cetorum MIT 99-5656]
Length = 352
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DL++E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLRIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHIPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL++E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|336435165|ref|ZP_08614882.1| peptide chain release factor 1 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336001556|gb|EGN31692.1| peptide chain release factor 1 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 357
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 79/102 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VA++P+ ++++V LD D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAIMPEAEEVDVELDMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI + Q+++SQ+KN+ AL L+ +YE++ +Q
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKDKALKVLRARLYEMELAKQ 284
Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L+ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 VELDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|420399525|ref|ZP_14898730.1| peptide chain release factor 1 [Helicobacter pylori CPY3281]
gi|393019674|gb|EJB20815.1| peptide chain release factor 1 [Helicobacter pylori CPY3281]
Length = 223
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 54 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 113
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 114 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 156
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 84 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 116
>gi|338997725|ref|ZP_08636417.1| peptide chain release factor 1 [Halomonas sp. TD01]
gi|338765354|gb|EGP20294.1| peptide chain release factor 1 [Halomonas sp. TD01]
Length = 362
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 116/215 (53%), Gaps = 53/215 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ +D+ ++ ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVMPEVEDVGDIDINPSDLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+TH+PTG+ VE QE+RSQ KNRA A+ AKLKR + Q +EQ + +RS
Sbjct: 246 IRITHLPTGVVVECQEERSQHKNRAKAMSLLAAKLKRNAVDSQRQEQAD-------ARRS 298
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R+E R P RI
Sbjct: 299 LVGSGDRSE------RIRTYNFPQG---------------------------------RI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
TDHRI T+Y + E ++ G L ++I + H+YQ
Sbjct: 320 TDHRINLTLYKLTEIIT-GEQLDDVIEPL-IHEYQ 352
>gi|266621433|ref|ZP_06114368.1| peptide chain release factor 1 [Clostridium hathewayi DSM 13479]
gi|288866872|gb|EFC99170.1| peptide chain release factor 1 [Clostridium hathewayi DSM 13479]
Length = 358
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D++V +++KD +++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEAEDVDVVIEDKDCRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQ++N+ A L+ +Y+++ E+++N
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELEKRQNS--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE+ ++ TG + + T + R+TDHR
Sbjct: 288 ------------------------EAEERRSQI----GTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGG--AMLHELIS 202
I+ T+Y + M+G +L LI+
Sbjct: 320 IKLTLYKIDSIMNGDITELLDSLIA 344
>gi|348589614|ref|YP_004874076.1| peptide chain release factor 1 [Taylorella asinigenitalis MCE3]
gi|347973518|gb|AEP36053.1| Peptide chain release factor 1 [Taylorella asinigenitalis MCE3]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 106/195 (54%), Gaps = 45/195 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAV+P+ ++ EV L+ DL+++T RA+GAGGQH+N TDSA
Sbjct: 180 VQRVPETESQGRVHTSACTVAVMPEADELAEVVLNPADLRIDTFRASGAGGQHINKTDSA 239
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI E Q+DRSQ KN+A A++ L I +IQ +EQ+++
Sbjct: 240 VRITHIPTGIVAECQDDRSQHKNKARAMSVLAARINDIQRQEQQSKEAA----------- 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
E K L TG + + T + R+TDH
Sbjct: 289 ---------------------------ERKSLV-----GTGDRSERIRTYNYPQGRVTDH 316
Query: 179 RIQRTVYNVAEFMSG 193
RI T+Y + + M G
Sbjct: 317 RINLTLYKLPQIMEG 331
>gi|405983472|ref|ZP_11041778.1| peptide chain release factor 1 [Slackia piriformis YIT 12062]
gi|404389078|gb|EJZ84159.1| peptide chain release factor 1 [Slackia piriformis YIT 12062]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 80/103 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +VAVLP+ +I++ ++E DL+++ RA G GGQ VNTTDSAV
Sbjct: 180 VQRVPKTESQGRIHTSTATVAVLPEADEIDIEINENDLRIDVYRAGGPGGQCVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+P+G+ V+SQ+ +SQ++N+ A+A L+ +YE EQ+
Sbjct: 240 RITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQ 282
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + E DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 210 IEINENDLRIDVYRAGGPGGQCVNTTDSAVRIT 242
>gi|399019154|ref|ZP_10721303.1| peptide chain release factor 1 [Herbaspirillum sp. CF444]
gi|398098301|gb|EJL88588.1| peptide chain release factor 1 [Herbaspirillum sp. CF444]
Length = 356
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V ++ D++++T RA+GAGGQH+N TDSA
Sbjct: 180 VQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSA 239
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A+AL L I ++Q EQ+++
Sbjct: 240 VRITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSK 285
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + D++++T RA+GAGGQH+N TDSA RIT
Sbjct: 211 VDINPADIRIDTYRASGAGGQHINKTDSAVRIT 243
>gi|358061930|ref|ZP_09148580.1| peptide chain release factor 1 [Clostridium hathewayi WAL-18680]
gi|356699770|gb|EHI61280.1| peptide chain release factor 1 [Clostridium hathewayi WAL-18680]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 83/104 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAV+P+ +D++V +++KD +++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVMPEAEDVDVVIEDKDCRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+THIPTGI + SQ ++SQ++N+ A L+ +Y+++ E+++N
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELEKRQN 286
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +E+KD +++ RA+G GGQ VNTTDSA R+T
Sbjct: 213 VVIEDKDCRIDVMRASGNGGQCVNTTDSAVRLT 245
>gi|407456899|ref|YP_006735472.1| peptidyl-tRNA hydrolase domain-containing protein [Chlamydia
psittaci VS225]
gi|405784160|gb|AFS22907.1| peptidyl-tRNA hydrolase domain protein [Chlamydia psittaci VS225]
Length = 279
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 74/89 (83%), Gaps = 2/89 (2%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANAL 87
AVR+TH+PTG+ V Q++RSQ KN+A A+
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAM 271
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHI---PT 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKILENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASAK 141
Query: 68 GISVE----SQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K ++ +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGTGVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>gi|414175690|ref|ZP_11430094.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
gi|410889519|gb|EKS37322.1| peptide chain release factor 1 [Afipia broomeae ATCC 49717]
Length = 361
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEAEEVDVAIKNDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ ++RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RIDSERSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKGQVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGDA-LGELI 342
>gi|258544629|ref|ZP_05704863.1| peptide chain release factor 1 [Cardiobacterium hominis ATCC 15826]
gi|258520137|gb|EEV88996.1| peptide chain release factor 1 [Cardiobacterium hominis ATCC 15826]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 117/210 (55%), Gaps = 51/210 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP DI+ + ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESGGRIHTSAATVAILPVGDDIQPIEINPADLKVDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A+ RL+ RL+
Sbjct: 244 IRITHLPSGIVVECQEERSQHKNRAKAM----RLL------------AARLLD------- 280
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
+ RT++ + + E K G+G + + T + R+T
Sbjct: 281 VERTKA----------------------QNEQAAERKSLVGSGDRSERIRTYNYPQSRVT 318
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI T+Y++A+ + GG L +I+ ++Q
Sbjct: 319 DHRINLTLYSLADILEGG--LDAIITPLQQ 346
>gi|216264551|ref|ZP_03436543.1| peptide chain release factor 1 [Borrelia burgdorferi 156a]
gi|218249543|ref|YP_002374724.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7]
gi|221217544|ref|ZP_03589014.1| peptide chain release factor 1 [Borrelia burgdorferi 72a]
gi|223889241|ref|ZP_03623829.1| peptide chain release factor 1 [Borrelia burgdorferi 64b]
gi|224532854|ref|ZP_03673469.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23]
gi|224534094|ref|ZP_03674677.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a]
gi|225549805|ref|ZP_03770769.1| peptide chain release factor 1 [Borrelia burgdorferi 118a]
gi|226321514|ref|ZP_03797040.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26]
gi|387825850|ref|YP_005805303.1| peptide chain release factor 1 [Borrelia burgdorferi JD1]
gi|3914620|sp|O51214.1|RF1_BORBU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|226739097|sp|B7J1C9.1|RF1_BORBZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|215981024|gb|EEC21831.1| peptide chain release factor 1 [Borrelia burgdorferi 156a]
gi|218164731|gb|ACK74792.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7]
gi|221192607|gb|EEE18824.1| peptide chain release factor 1 [Borrelia burgdorferi 72a]
gi|223885274|gb|EEF56376.1| peptide chain release factor 1 [Borrelia burgdorferi 64b]
gi|224512243|gb|EEF82629.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23]
gi|224512793|gb|EEF83161.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a]
gi|225369613|gb|EEG99062.1| peptide chain release factor 1 [Borrelia burgdorferi 118a]
gi|226232703|gb|EEH31456.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26]
gi|312148526|gb|ADQ31185.1| peptide chain release factor 1 [Borrelia burgdorferi JD1]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|386749203|ref|YP_006222410.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
gi|384555446|gb|AFI03780.1| peptide chain release factor 1 [Helicobacter cetorum MIT 00-7128]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DL++E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLRIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHIPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL++E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLRIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|325847800|ref|ZP_08170022.1| peptide chain release factor 1 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480818|gb|EGC83871.1| peptide chain release factor 1 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 112/206 (54%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ ++++ +D D++ + R++G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ L+ +YE++ E KR
Sbjct: 243 RLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRARLYEMEEE------------KRQKEISD 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+R +++ TG + + T + RITDHR
Sbjct: 291 NR-------------------------------KSQVGTGDRSERIRTYNYPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGG--AMLHELISD 203
I +T+Y + +F+ G M+ LI++
Sbjct: 320 INKTIYQLDDFLDGNIEEMIDSLITE 345
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Query: 4 VPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRM 62
+ + +K+ + + + ++PQ + D KD+ VE + GAGG+ + RM
Sbjct: 81 IDENKKNLEKYNEDLKILLIPQDPN-----DHKDVIVEIR--AGAGGEEAGLFAGNLYRM 133
Query: 63 THIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHR 122
H+ ED I + + +K + ++ E ++ R R
Sbjct: 134 YHMYADKQNYKTED---IDVSSQGIGGMKEATFIVRGEGAYSKLKYESGVHRVQRVPETE 190
Query: 123 TESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ I LP + + ++ D++ + R++G GGQ VNTTDSA R+T
Sbjct: 191 SGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTDSAVRLT 245
>gi|227529623|ref|ZP_03959672.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
gi|227350413|gb|EEJ40704.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540]
Length = 362
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 117/217 (53%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++ +
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAY-------------- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + TG + + T + +R+TDHR
Sbjct: 294 -----------------------------DAKRKDAIGTGDRSERIRTYNYPQNRVTDHR 324
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+ + + MSG L E+I + D +++QL
Sbjct: 325 IGLTLNKLDKIMSGD--LDEIIEALIVADQTKKLEQL 359
>gi|392940166|ref|ZP_10305810.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
gi|392291916|gb|EIW00360.1| LOW QUALITY PROTEIN: peptide chain release factor 1
[Thermoanaerobacter siderophilus SR4]
Length = 356
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+K++ R+ G GGQ VNTTDSAV
Sbjct: 182 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 242 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 285 ----------REIAETRKSQV----------------GTGERSERIRTYNFPQGRVTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 319 IGLTLYRLQEVLDGD--LDEIIDALILND 345
>gi|344205377|ref|YP_004790519.1| peptide chain release factor 1 [Mycoplasma putrefaciens KS1]
gi|343957300|gb|AEM69015.1| peptide chain release factor 1 [Mycoplasma putrefaciens KS1]
Length = 364
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +VAVLP+ ++EV + DL+++T R++GAGGQHVNTTDSAV
Sbjct: 187 VQRVPKTEAKGRIQTSTATVAVLPEMSEVEVDIKPSDLRIDTYRSSGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI SQ+ RSQ N+ A+ L+ IYE + E+Q+
Sbjct: 247 RITHIPTGIVAASQDGRSQHDNKDVAMTMLRAKIYEAELEKQQ 289
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 87 LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHL 146
+ K R+ +++FE +R V+ V K A+ I + + + E S V +
Sbjct: 168 MIKGDRVYSKLKFESGAHR--VQRVPKTEAKGRIQTSTATVAVLPE------MSEVEVDI 219
Query: 147 EEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 220 KPSDLRIDTYRSSGAGGQHVNTTDSAVRIT 249
>gi|398974412|ref|ZP_10685039.1| peptide chain release factor 1 [Pseudomonas sp. GM25]
gi|398141614|gb|EJM30530.1| peptide chain release factor 1 [Pseudomonas sp. GM25]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRARAMA-----------------WLAAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|339499058|ref|YP_004697093.1| peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
gi|338833407|gb|AEJ18585.1| Peptide chain release factor 1 [Spirochaeta caldaria DSM 7334]
Length = 356
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTSTV+VAVLP+ ++ E+ + ++DL+++ RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPATEASGRIHTSTVTVAVLPEAEETEIEIKQEDLRIDVMRAGGPGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+GI V Q+++SQIKN+A A+ L+ +YE++
Sbjct: 243 RITHIPSGIVVHCQDEKSQIKNKAKAMRILRARLYEME 280
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++++DL+++ RA G GGQ VNTTDSA RIT
Sbjct: 213 IEIKQEDLRIDVMRAGGPGGQCVNTTDSAVRIT 245
>gi|408789820|ref|ZP_11201461.1| Peptide chain release factor 1 [Lactobacillus florum 2F]
gi|408520842|gb|EKK20864.1| Peptide chain release factor 1 [Lactobacillus florum 2F]
Length = 368
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 82/106 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +V V+P+ +D+++ LD D++ + R++GAGGQH+N T SAV
Sbjct: 191 VQRVPETESAGRVHTSTATVGVMPEEEDVDIQLDPADIRTDVYRSSGAGGQHINKTSSAV 250
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++E+++
Sbjct: 251 RMTHLPTGIVVAMQDERSQQQNRAKAMKVLKARVYDYYKQKEEDQY 296
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ D++ + R++GAGGQH+N T SA R+T
Sbjct: 221 IQLDPADIRTDVYRSSGAGGQHINKTSSAVRMT 253
>gi|387773833|ref|ZP_10129118.1| peptide chain release factor 1 [Haemophilus parahaemolyticus HK385]
gi|386903654|gb|EIJ68461.1| peptide chain release factor 1 [Haemophilus parahaemolyticus HK385]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI VE Q++RSQ KN+A ALA L I ++ EQE + + T+R+
Sbjct: 244 VRITHLPTGIVVECQDERSQHKNKAKALAVLASRIVQV---EQERQAAEQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + +P PA DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPA------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|384895459|ref|YP_005769448.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
gi|315586075|gb|ADU40456.1| peptide chain release factor RF1 [Helicobacter pylori 35A]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E+ ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 219 DLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|256751358|ref|ZP_05492237.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus
CCSD1]
gi|256749740|gb|EEU62765.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus
CCSD1]
Length = 246
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 110/209 (52%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++++V ++ D+K++ R+ G GGQ VNTTDSAV
Sbjct: 72 VQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKIDVFRSGGHGGQSVNTTDSAV 131
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQI+NR AL L+ +YE+ +EQ+
Sbjct: 132 RVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQ----------------- 174
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T S TG + + T + R+TDHR
Sbjct: 175 ----------REIAETRKSQV----------------GTGERSERIRTYNFPQGRVTDHR 208
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I T+Y + E + G L E+I + +D
Sbjct: 209 IGLTLYRLQEVLDGD--LDEIIDALILND 235
>gi|330811719|ref|YP_004356181.1| peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|378952822|ref|YP_005210310.1| peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|423699274|ref|ZP_17673764.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
gi|327379827|gb|AEA71177.1| Peptide chain release factor 1 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|359762836|gb|AEV64915.1| Peptide chain release factor 1 [Pseudomonas fluorescens F113]
gi|387996495|gb|EIK57825.1| peptide chain release factor 1 [Pseudomonas fluorescens Q8r1-96]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A+A L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMAWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|109948016|ref|YP_665244.1| peptide chain release factor 1 [Helicobacter acinonychis str.
Sheeba]
gi|122973223|sp|Q17VT1.1|RF1_HELAH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|109715237|emb|CAK00245.1| peptide chain release factor RF-1 [Helicobacter acinonychis str.
Sheeba]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E+ ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 219 DLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|215764957|dbj|BAG86654.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 314
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 140 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 199
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG V Q++RSQ +N+A AL L+ +YEI+
Sbjct: 200 RITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIE 237
Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 170 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 202
>gi|205355626|ref|ZP_03222396.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CG8421]
gi|419644630|ref|ZP_14176206.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|419660231|ref|ZP_14190712.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419671138|ref|ZP_14200812.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-14]
gi|205346403|gb|EDZ33036.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CG8421]
gi|380621654|gb|EIB40447.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|380637292|gb|EIB54935.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380649755|gb|EIB66439.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-14]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|419648646|ref|ZP_14179980.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|380626157|gb|EIB44652.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9217]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|315125019|ref|YP_004067023.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|419673330|ref|ZP_14202802.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
51037]
gi|315018741|gb|ADT66834.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|380653966|gb|EIB70351.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
51037]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|197120814|ref|YP_002132765.1| peptide chain release factor 1 [Anaeromyxobacter sp. K]
gi|238689845|sp|B4UAY8.1|RF1_ANASK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|196170663|gb|ACG71636.1| peptide chain release factor 1 [Anaeromyxobacter sp. K]
Length = 370
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAV+P+ ++I+V ++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 187 VQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V+ Q+++SQ+KNR A+ L+ ++EI+ E Q RSAR
Sbjct: 247 RLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQ-----------RSARDAT 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + DR+TDHR
Sbjct: 296 RKSQV--------------------------------GTGDRSEKIRTYNFPQDRLTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
+ T +N+ M G
Sbjct: 324 VNYTRHNLPAVMDG 337
>gi|420403221|ref|ZP_14902407.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
gi|393020387|gb|EJB21526.1| peptide chain release factor 1 [Helicobacter pylori CPY6261]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E+ ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 219 DLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|419642839|ref|ZP_14174616.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|380623764|gb|EIB42450.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
ATCC 33560]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|220915515|ref|YP_002490819.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans
2CP-1]
gi|254790857|sp|B8JAU2.1|RF1_ANAD2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219953369|gb|ACL63753.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans
2CP-1]
Length = 370
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAV+P+ ++I+V ++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 187 VQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V+ Q+++SQ+KNR A+ L+ ++EI+ E Q RSAR
Sbjct: 247 RLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQ-----------RSARDAT 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + DR+TDHR
Sbjct: 296 RKSQV--------------------------------GTGDRSEKIRTYNFPQDRLTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
+ T +N+ M G
Sbjct: 324 VNYTRHNLPAVMDG 337
>gi|431904883|gb|ELK10020.1| Peptide chain release factor 1, mitochondrial [Pteropus alecto]
Length = 378
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 111/210 (52%), Gaps = 47/210 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL++ T RA GAGGQHVNTTD
Sbjct: 193 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIATFRAKGAGGQHVNTTD 252
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ E+ ++SAR
Sbjct: 253 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDR-------CHQQSAR 305
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 306 KL------------------------------------QVGTRAQSERIRTYNFTQDRVT 329
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
DHRI V ++ F+ G L +LI + Q
Sbjct: 330 DHRIAYEVRDIKRFLCGEKCLDQLIQTLLQ 359
>gi|50730809|ref|XP_417026.1| PREDICTED: peptide chain release factor 1, mitochondrial [Gallus
gallus]
Length = 455
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+T S R+ HT T+SV VLPQP++++V +D KDL+++T RA GAGGQHVN TD
Sbjct: 267 VQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTD 326
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQ N+ AL L+ +Y+ E+Q L ++SAR
Sbjct: 327 SAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQ-------LSQEQSAR 379
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 380 KL------------------------------------QLGTRAQSERIRTYNFTQDRVT 403
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELIS 202
DHRI N+ E +SG L +LI+
Sbjct: 404 DHRISYDARNIKEILSGKEELDKLIN 429
>gi|153952433|ref|YP_001398893.1| peptide chain release factor 1 [Campylobacter jejuni subsp. doylei
269.97]
gi|166223543|sp|A7H5W3.1|RF1_CAMJD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|152939879|gb|ABS44620.1| peptide chain release factor 1 [Campylobacter jejuni subsp. doylei
269.97]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQENE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|86152274|ref|ZP_01070485.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
260.94]
gi|121613478|ref|YP_001001255.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
81-176]
gi|148925756|ref|ZP_01809444.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157415831|ref|YP_001483087.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
81116]
gi|384442185|ref|YP_005658488.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
M1]
gi|415746550|ref|ZP_11475558.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
327]
gi|419617720|ref|ZP_14151289.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
129-258]
gi|419626097|ref|ZP_14159096.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|419635881|ref|ZP_14168173.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
55037]
gi|419640047|ref|ZP_14171987.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23357]
gi|166223544|sp|A1W1L4.1|RF1_CAMJJ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|172047202|sp|A8FNS3.1|RF1_CAMJ8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|85840763|gb|EAQ58014.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
260.94]
gi|87249710|gb|EAQ72669.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
81-176]
gi|145845766|gb|EDK22857.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157386795|gb|ABV53110.1| peptide chain release factor RF-1 [Campylobacter jejuni subsp.
jejuni 81116]
gi|307748468|gb|ADN91738.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
M1]
gi|315931656|gb|EFV10617.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
327]
gi|380596711|gb|EIB17391.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
129-258]
gi|380603796|gb|EIB23859.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|380611443|gb|EIB30992.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
55037]
gi|380619852|gb|EIB38881.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23357]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|51598456|ref|YP_072644.1| peptide chain release factor 1 [Borrelia garinii PBi]
gi|61214604|sp|Q662G9.1|RF1_BORGA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|51573027|gb|AAU07052.1| peptide chain release factor 1 [Borrelia garinii PBi]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---ERKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +++EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|419698143|ref|ZP_14225865.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|380675981|gb|EIB90869.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23211]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|283956995|ref|ZP_06374467.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1336]
gi|283791496|gb|EFC30293.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1336]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|254778803|ref|YP_003056908.1| peptide chain release factor 1 [Helicobacter pylori B38]
gi|254000714|emb|CAX28630.1| Peptide chain release factor 1 (RF-1) [Helicobacter pylori B38]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKVRLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|420469976|ref|ZP_14968687.1| peptide chain release factor 1 [Helicobacter pylori Hp H-11]
gi|393087022|gb|EJB87692.1| peptide chain release factor 1 [Helicobacter pylori Hp H-11]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKVRLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|419630162|ref|ZP_14162863.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
60004]
gi|419639659|ref|ZP_14171678.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
86605]
gi|380606074|gb|EIB26005.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
60004]
gi|380615655|gb|EIB34892.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
86605]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMEDG-LFDEIIEPLITH 344
>gi|219685818|ref|ZP_03540627.1| peptide chain release factor 1 [Borrelia garinii Far04]
gi|219672651|gb|EED29681.1| peptide chain release factor 1 [Borrelia garinii Far04]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---ERKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +++EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|219684506|ref|ZP_03539449.1| peptide chain release factor 1 [Borrelia garinii PBr]
gi|219671868|gb|EED28922.1| peptide chain release factor 1 [Borrelia garinii PBr]
Length = 357
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---ERKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +++EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|419669878|ref|ZP_14199641.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-11]
gi|380646062|gb|EIB63054.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|419657545|ref|ZP_14188196.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380634666|gb|EIB52537.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-1]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|424846652|ref|ZP_18271246.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NW]
gi|356485950|gb|EHI15937.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NW]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|283953774|ref|ZP_06371305.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
414]
gi|283794815|gb|EFC33553.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
414]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|57238625|ref|YP_179756.1| peptide chain release factor 1 [Campylobacter jejuni RM1221]
gi|384443976|ref|YP_005660228.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
S3]
gi|419620713|ref|ZP_14154130.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
51494]
gi|419634004|ref|ZP_14166421.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|419646902|ref|ZP_14178353.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
53161]
gi|419667972|ref|ZP_14197917.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-10]
gi|419679590|ref|ZP_14208578.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
87459]
gi|419696234|ref|ZP_14224100.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|424849079|ref|ZP_18273548.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
D2600]
gi|73621534|sp|Q5HSH9.1|RF1_CAMJR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|57167429|gb|AAW36208.1| peptide chain release factor 1 [Campylobacter jejuni RM1221]
gi|315059063|gb|ADT73392.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
S3]
gi|356487716|gb|EHI17658.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
D2600]
gi|380598636|gb|EIB19028.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
51494]
gi|380610445|gb|EIB30037.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|380622656|gb|EIB41400.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
53161]
gi|380644998|gb|EIB62087.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380656951|gb|EIB73074.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
87459]
gi|380674977|gb|EIB89894.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23210]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|425790477|ref|YP_007018394.1| peptide chain release factor 1 [Helicobacter pylori Aklavik86]
gi|425628792|gb|AFX89332.1| peptide chain release factor 1 [Helicobacter pylori Aklavik86]
Length = 352
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E+ ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/27 (74%), Positives = 21/27 (77%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 219 DLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|392398519|ref|YP_006435120.1| peptide chain release factor 1 (bRF-1) [Flexibacter litoralis DSM
6794]
gi|390529597|gb|AFM05327.1| bacterial peptide chain release factor 1 (bRF-1) [Flexibacter
litoralis DSM 6794]
Length = 358
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 106/204 (51%), Gaps = 48/204 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++AVLP+ +E++LD D+K +T RA+GAGGQHVN T+SA+
Sbjct: 183 VQRVPDTESQGRVHTSAATIAVLPETDAVEINLDMGDIKKDTFRASGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY--EIQFEEQENRWVVRLVTKRSART 118
R+TH+P+G+ VE Q+ RSQ++N AL LK +Y E+Q + E V R + R R+
Sbjct: 243 RLTHLPSGLVVECQDGRSQLQNYEQALKVLKARLYDQELQKKNDETSEVRRSMVGRGDRS 302
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDH 178
RT + S R+TDH
Sbjct: 303 DKIRTYNY--------------------------------------------SQGRVTDH 318
Query: 179 RIQRTVYNVAEFMSG--GAMLHEL 200
RI +V+N+ M G G+ + EL
Sbjct: 319 RINFSVFNLPNVMDGDIGSFIEEL 342
>gi|385325990|ref|YP_005880427.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str. F]
gi|284931146|gb|ADC31084.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str. F]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 74/96 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST+++AVLPQ D+E+ ++ DL+++T RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPATEAKGRVHTSTITIAVLPQQDDVEIEINPADLRIDTYRASGAGGQHVNRTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI QE +SQI NR A+ L+ ++E
Sbjct: 246 RITHIPTGIVAACQEGKSQIANRETAMKMLRSKLWE 281
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + DL+++T RA+GAGGQHVN T+SA RIT
Sbjct: 216 IEINPADLRIDTYRASGAGGQHVNRTESAVRIT 248
>gi|86156794|ref|YP_463579.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans
2CP-C]
gi|119361506|sp|Q2IMW2.1|RF1_ANADE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|85773305|gb|ABC80142.1| bacterial peptide chain release factor 1 (bRF-1) [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 370
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAV+P+ ++I+V ++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 187 VQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V+ Q+++SQ+KNR A+ L+ ++EI+ E Q RSAR
Sbjct: 247 RLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQ-----------RSARDAT 295
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + DR+TDHR
Sbjct: 296 RKSQV--------------------------------GTGDRSEKIRTYNFPQDRLTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
+ T +N+ M G
Sbjct: 324 VNYTRHNLPAVMDG 337
>gi|374572180|ref|ZP_09645276.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
gi|374420501|gb|EHR00034.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM471]
Length = 361
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 48/199 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAV+P+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVMPEVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAM 196
HRI T+Y + + M+G A+
Sbjct: 320 HRINLTLYKLPQVMAGEAL 338
>gi|86149291|ref|ZP_01067522.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|218563201|ref|YP_002344981.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|317511425|ref|ZP_07968752.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
305]
gi|384448826|ref|YP_005656877.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
IA3902]
gi|403056323|ref|YP_006633728.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|407942947|ref|YP_006858594.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
PT14]
gi|415731397|ref|ZP_11473471.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|419624823|ref|ZP_14157897.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|419626996|ref|ZP_14159911.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|419632332|ref|ZP_14164880.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|419636896|ref|ZP_14169081.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|419650994|ref|ZP_14182190.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419656656|ref|ZP_14187438.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419661653|ref|ZP_14191974.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-831]
gi|419663169|ref|ZP_14193371.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419677248|ref|ZP_14206403.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
87330]
gi|419680361|ref|ZP_14209222.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
140-16]
gi|419685395|ref|ZP_14213953.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1577]
gi|419691245|ref|ZP_14219410.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1893]
gi|20139359|sp|Q9PM63.1|RF1_CAMJE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|85840073|gb|EAQ57331.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|112360908|emb|CAL35709.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|284926807|gb|ADC29159.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927641|gb|EFV06972.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929077|gb|EFV08310.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
305]
gi|380597689|gb|EIB18184.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|380607480|gb|EIB27341.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380609047|gb|EIB28761.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|380616384|gb|EIB35589.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|380627676|gb|EIB46046.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380634366|gb|EIB52250.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380639680|gb|EIB57162.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380643482|gb|EIB60707.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380654757|gb|EIB71102.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
87330]
gi|380660524|gb|EIB76469.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
140-16]
gi|380664174|gb|EIB79782.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1577]
gi|380667289|gb|EIB82746.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1893]
gi|401781975|emb|CCK67686.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|407906785|gb|AFU43614.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
PT14]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|407363822|ref|ZP_11110354.1| peptide chain release factor 1 [Pseudomonas mandelii JR-1]
Length = 360
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQETIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +F+ DQL
Sbjct: 323 RVNLTLYSLDEVLAGGVEAVIEPLLA-------EFQADQL 355
>gi|48926665|gb|AAT47454.1| putative peptide chain release factor [Oryza sativa Japonica Group]
Length = 350
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 176 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 235
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG V Q++RSQ +N+A AL L+ +YEI+
Sbjct: 236 RITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIE 273
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 206 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 238
>gi|296116158|ref|ZP_06834776.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
gi|295977264|gb|EFG84024.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC
23769]
Length = 353
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 78/96 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V +++ DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEINDNDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+P+GI V QE++SQ KNRA A+ L+ +YE
Sbjct: 240 RITHMPSGIVVAMQEEKSQHKNRAKAMKILRARLYE 275
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 210 VEINDNDLRIDVYRASGAGGQHVNKTESAVRIT 242
>gi|424783047|ref|ZP_18209890.1| Peptide chain release factor 1 [Campylobacter showae CSUNSWCD]
gi|421959190|gb|EKU10801.1| Peptide chain release factor 1 [Campylobacter showae CSUNSWCD]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 114/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS V+VA++P+ +D E+ ++ DL+++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDLRIDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ A+ LK +YEIQ EE RL + S R
Sbjct: 241 RITHIPTGIVVTNQDGKSQHKNKEAAMKVLKARLYEIQEEE-------RLAKETSER--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGTGDRSGRIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + M+ G + E+I + H YQ
Sbjct: 318 INLTLYRLDAIMAAG-LFDEIIEPLIAH-YQ 346
>gi|255323257|ref|ZP_05364392.1| peptide chain release factor 1 [Campylobacter showae RM3277]
gi|255299780|gb|EET79062.1| peptide chain release factor 1 [Campylobacter showae RM3277]
Length = 355
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 114/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS V+VA++P+ +D E+ ++ DL+++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDLRIDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ A+ LK +YEIQ EE RL + S R
Sbjct: 241 RITHIPTGIVVTNQDGKSQHKNKEAAMKVLKARLYEIQEEE-------RLAKETSER--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGTGDRSGRIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + M+ G + E+I + H YQ
Sbjct: 318 INLTLYRLDAIMAAG-LFDEIIEPLIAH-YQ 346
>gi|294660260|ref|NP_852919.2| peptide chain release factor 1 [Mycoplasma gallisepticum str.
R(low)]
gi|385325225|ref|YP_005879663.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str.
R(high)]
gi|401766002|ref|YP_006581008.1| peptide chain release factor 1 [Mycoplasma gallisepticum
VA94_7994-1-7P]
gi|401766770|ref|YP_006581775.1| peptide chain release factor 1 [Mycoplasma gallisepticum
NC95_13295-2-2P]
gi|401767525|ref|YP_006582529.1| peptide chain release factor 1 [Mycoplasma gallisepticum
NC96_1596-4-2P]
gi|401768297|ref|YP_006583300.1| peptide chain release factor 1 [Mycoplasma gallisepticum
NY01_2001.047-5-1P]
gi|401769058|ref|YP_006584060.1| peptide chain release factor 1 [Mycoplasma gallisepticum
WI01_2001.043-13-2P]
gi|401769805|ref|YP_006584806.1| peptide chain release factor 1 [Mycoplasma gallisepticum
NC06_2006.080-5-2P]
gi|401770550|ref|YP_006585550.1| peptide chain release factor 1 [Mycoplasma gallisepticum
CA06_2006.052-5-2P]
gi|46576715|sp|Q7NBX3.2|RF1_MYCGA RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|284811917|gb|AAP56487.2| Peptide chain release factor 1 [Mycoplasma gallisepticum str.
R(low)]
gi|284930381|gb|ADC30320.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str.
R(high)]
gi|400272309|gb|AFP75772.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
VA94_7994-1-7P]
gi|400273077|gb|AFP76539.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
NC95_13295-2-2P]
gi|400273832|gb|AFP77293.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
NC96_1596-4-2P]
gi|400274604|gb|AFP78064.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
NY01_2001.047-5-1P]
gi|400275365|gb|AFP78824.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
WI01_2001.043-13-2P]
gi|400276112|gb|AFP79570.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
NC06_2006.080-5-2P]
gi|400276857|gb|AFP80314.1| Peptide chain release factor 1 [Mycoplasma gallisepticum
CA06_2006.052-5-2P]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 74/96 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST+++AVLPQ D+E+ ++ DL+++T RA+GAGGQHVN T+SAV
Sbjct: 186 VQRVPATEAKGRVHTSTITIAVLPQQDDVEIEINPADLRIDTYRASGAGGQHVNRTESAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI QE +SQI NR A+ L+ ++E
Sbjct: 246 RITHIPTGIVAACQEGKSQIANRETAMKMLRSKLWE 281
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + DL+++T RA+GAGGQHVN T+SA RIT
Sbjct: 216 IEINPADLRIDTYRASGAGGQHVNRTESAVRIT 248
>gi|386399803|ref|ZP_10084581.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
gi|385740429|gb|EIG60625.1| peptide chain release factor 1 [Bradyrhizobium sp. WSM1253]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 48/199 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAV+P+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVMPEVEEVDVEIRNDDLRIETMRAGGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAM 196
HRI T+Y + + M+G A+
Sbjct: 320 HRINLTLYKLPQVMAGEAL 338
>gi|419683389|ref|ZP_14212091.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1213]
gi|380659067|gb|EIB75056.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1213]
Length = 355
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|237745909|ref|ZP_04576389.1| peptide chain release factor 1 [Oxalobacter formigenes HOxBLS]
gi|229377260|gb|EEO27351.1| peptide chain release factor 1 [Oxalobacter formigenes HOxBLS]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 111/203 (54%), Gaps = 45/203 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D+ +VH++ D++V+T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPVTETQGRIHTSACTVAVMPEADDVSDVHINPADIRVDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I + Q +EQ+ + T++S
Sbjct: 244 VRITHLPTGIVVECQDDRSQHKNKAQAMQVLAARIKDRQMQEQQAKEA---ATRKSLIGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E I + P R+TDHR
Sbjct: 301 GDRSER-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELIS 202
I T+Y + EF+ G M EL+S
Sbjct: 322 INLTLYKL-EFIMDGDM-DELVS 342
>gi|115462961|ref|NP_001055080.1| Os05g0277300 [Oryza sativa Japonica Group]
gi|113578631|dbj|BAF16994.1| Os05g0277300, partial [Oryza sativa Japonica Group]
Length = 349
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 175 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 234
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG V Q++RSQ +N+A AL L+ +YEI+
Sbjct: 235 RITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIE 272
Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 205 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 237
>gi|88596258|ref|ZP_01099495.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
84-25]
gi|419675869|ref|ZP_14205126.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
110-21]
gi|88191099|gb|EAQ95071.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
84-25]
gi|380651109|gb|EIB67684.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
110-21]
Length = 355
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|419652035|ref|ZP_14183120.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380630429|gb|EIB48664.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-894]
Length = 355
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|377831957|ref|ZP_09814921.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
gi|377553964|gb|EHT15679.1| peptide chain release factor RF1 [Lactobacillus mucosae LM1]
Length = 362
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 81/106 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+E+ +D KD++ + R++GAGGQH+N T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVEIDIDPKDIRTDVYRSSGAGGQHINKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ ++++N +
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKARVYDYYQQKEQNAY 293
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KD++ + R++GAGGQH+N T SA R+T
Sbjct: 218 IDIDPKDIRTDVYRSSGAGGQHINKTSSAVRMT 250
>gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group]
gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group]
Length = 368
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 194 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 253
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG V Q++RSQ +N+A AL L+ +YEI+
Sbjct: 254 RITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIE 291
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 224 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 256
>gi|402702451|ref|ZP_10850430.1| peptide chain release factor 1 [Pseudomonas fragi A22]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPSDLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ W+ SA+
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMS-----------------WL-------SAKLN 281
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+T ++ A+ E K L +G + + T + A R+TDH
Sbjct: 282 DQQT--------------SAAANAIASERKSLV-----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ + ++GG A++ L++ +F+ DQL
Sbjct: 323 RVNLTLYSLDDVLAGGVDAVIEPLLA-------EFQADQL 355
>gi|386853602|ref|YP_006202887.1| peptide chain release factor 1 [Borrelia garinii BgVir]
gi|365193636|gb|AEW68534.1| PrfA [Borrelia garinii BgVir]
Length = 349
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 176 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 235
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 236 RITHMPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 286 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 309
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 310 DHRANITLYKLEEFMQG 326
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 88 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---ERKKWK 137
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +++EI+ ++ + R R I + +
Sbjct: 138 TEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 197
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 198 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 238
>gi|383768854|ref|YP_005447917.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
gi|381356975|dbj|BAL73805.1| peptide chain release factor 1 [Bradyrhizobium sp. S23321]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAV+P+ ++++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVMPEVEEVDVEIKNDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|408670823|ref|YP_006870894.1| peptide chain release factor 1 [Borrelia garinii NMJW1]
gi|407240645|gb|AFT83528.1| peptide chain release factor 1 [Borrelia garinii NMJW1]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHMPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---ERKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +++EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIVFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|383935144|ref|ZP_09988582.1| peptide chain release factor 1 [Rheinheimera nanhaiensis E407-8]
gi|383703909|dbj|GAB58673.1| peptide chain release factor 1 [Rheinheimera nanhaiensis E407-8]
Length = 363
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 102/194 (52%), Gaps = 43/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ P+ + ++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRVHTSACTVAIMPEIPESEAIEINPADLKVDTYRASGAGGQHVNRTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE Q++RSQ KNRA A++ L+ IQ E E R + T+RS
Sbjct: 246 IRITHLPTGIVVECQDERSQHKNRARAMSVLQS---RIQAAEDEKRRLAEESTRRSLVGS 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P R+TDHR
Sbjct: 303 GDRSE------RIRTYNFPQG---------------------------------RLTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + E M G
Sbjct: 324 INLTIYRLNEVMEG 337
>gi|86152633|ref|ZP_01070838.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|419654676|ref|ZP_14185590.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419665596|ref|ZP_14195660.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419687269|ref|ZP_14215675.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1798]
gi|419689018|ref|ZP_14217325.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1854]
gi|419692948|ref|ZP_14221006.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1928]
gi|85843518|gb|EAQ60728.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|380629865|gb|EIB48114.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380643132|gb|EIB60371.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380662761|gb|EIB78453.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1798]
gi|380664136|gb|EIB79746.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1854]
gi|380668306|gb|EIB83668.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
1928]
Length = 355
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|195941927|ref|ZP_03087309.1| peptide chain release factor 1 [Borrelia burgdorferi 80a]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYRLEEFMQG 334
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|182677881|ref|YP_001832027.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|238691232|sp|B2IHL7.1|RF1_BEII9 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|182633764|gb|ACB94538.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 358
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 117/211 (55%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLPQ ++++V ++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 183 VQRVPDTETQGRIHTSAATVAVLPQAEEVDVEINEADLKIDTMRAQGAGGQHVNKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG + Q++RSQ KNRA A++ L+ IY+ + ++ E +R+A
Sbjct: 243 RITHLPTGTVIFVQDERSQHKNRARAMSLLRSRIYDAKRQQLE--------AERAA---- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 291 -----------------------------DRKAQV--GSGDRSERIRTYNFPQGRLTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + + M+G A L E+I D DYQ
Sbjct: 320 INLTLYKLDKVMTGEA-LDEVI-DALITDYQ 348
>gi|390629611|ref|ZP_10257605.1| Peptide chain release factor 1 [Weissella confusa LBAE C39-2]
gi|390485247|emb|CCF29953.1| Peptide chain release factor 1 [Weissella confusa LBAE C39-2]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 79/106 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+++ +++KDL+V+ R++GAGGQHVN T SAV
Sbjct: 187 VQRVPDTESAGRVHTSTATVGVMPEYEDVDIEIEDKDLRVDVYRSSGAGGQHVNKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q+ RSQ +NRA A+ LK +Y+ + E +
Sbjct: 247 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKARVYDYYASQNEAEY 292
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+V+ R++GAGGQHVN T SA R+T
Sbjct: 217 IEIEDKDLRVDVYRSSGAGGQHVNKTSSAVRMT 249
>gi|394989620|ref|ZP_10382453.1| peptide chain release factor 1 [Sulfuricella denitrificans skB26]
gi|393791120|dbj|GAB72092.1| peptide chain release factor 1 [Sulfuricella denitrificans skB26]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 49/206 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ ++ EV+L+ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPATETQGRIHTSACTVAIMPEADELAEVNLNPADLRIDTYRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI VE Q+DRSQ KN++ A++ L I + Q E++++ T++S
Sbjct: 244 VRITHLPTGIVVECQDDRSQHKNKSQAMSVLAARIMDGQLRERQSKEA---ATRKSLIGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P RITDHR
Sbjct: 301 GDRSE------RIRTYNFPQG---------------------------------RITDHR 321
Query: 180 IQRTVYNVAEFMSG------GAMLHE 199
I T+Y + + M G GA++ E
Sbjct: 322 INLTLYKIDQIMDGDLDELVGALMSE 347
>gi|357979429|emb|CCE67050.1| peptide chain release factor 1 [Candidatus Mycoplasma haemominutum
'Birmingham 1']
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 49/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++V+VLP+P +IE+ LD +L+++ RA+GAGGQHVN T+SAV
Sbjct: 185 VQRVPETESKGRVHTSTITVSVLPEPDEIEIQLDPSELRIDVYRASGAGGQHVNKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PT I V Q++RSQ+ N+ A LK ++E
Sbjct: 245 RIVHLPTNIMVACQQERSQMLNKEIAFKILKAKLWE------------------------ 280
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDS-ADRITD 177
RE L++ +L K+ G G + + T + +R+TD
Sbjct: 281 ----------RER-----------KLQKDELFSTLKQQIGKGERSEKIRTYNYPQNRMTD 319
Query: 178 HRIQRTVYNVAEFMSGG-AMLHELISDIRQHDY 209
HRI T+ N++ M G A++H+ +S Q D+
Sbjct: 320 HRILLTINNLSSIMEGNLAVIHQQLSLREQEDW 352
>gi|389845176|ref|YP_006347256.1| peptide chain release factor 1 [Mesotoga prima MesG1.Ag.4.2]
gi|387859922|gb|AFK08013.1| peptide chain release factor 1 [Mesotoga prima MesG1.Ag.4.2]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ + EV +D DL+++T R++GAGGQHVN TDSAV
Sbjct: 183 VQRVPTTESGGRIHTSTATVAVLPEVSETEVKIDPADLRIDTYRSSGAGGQHVNKTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H PTGI V Q++RSQ +N+A AL L+ +YE+ + EN +T+ + RT I
Sbjct: 243 RIVHEPTGIVVAVQKERSQHQNKARALEILRARLYEMYSSKAENE-----ITE-ARRTQI 296
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
TG + + T + +R+TDHR
Sbjct: 297 -------------------------------------GTGERSEKIRTYNFPQNRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T Y + M G L EL++++ D R++ L
Sbjct: 320 INFTSYRLLYVMDGD--LDELVTELSAADINKRLELL 354
>gi|291561383|emb|CBL40182.1| bacterial peptide chain release factor 1 (bRF-1)
[butyrate-producing bacterium SS3/4]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 112/205 (54%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA++P+ ++ +V +D+KD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAIMPEAEEFDVVIDDKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + SQ ++SQ++N+ A L+ +Y+++ E ++N
Sbjct: 243 RLTHIPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELERRQN---------------- 286
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+ + ++ TG + + T + R+TDHR
Sbjct: 287 ---------------------------EEAAERRSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I+ T+Y + M G + ELI +
Sbjct: 320 IKLTLYKIDAIMDGD--IQELIDSL 342
>gi|374294759|ref|YP_005044950.1| peptide chain release factor 1 (bRF-1) [Clostridium clariflavum DSM
19732]
gi|359824253|gb|AEV67026.1| bacterial peptide chain release factor 1 (bRF-1) [Clostridium
clariflavum DSM 19732]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 82/102 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE +GR+HTSTV+VAVLP+ ++++V ++ DLK++T RA+GAGGQH+N T+SA+
Sbjct: 183 VQRIPETEANGRIHTSTVTVAVLPEVEEVDVEINPNDLKIDTFRASGAGGQHINKTESAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI V Q+ RSQ KN+ A+ L+ +YE+ E+Q
Sbjct: 243 RITHIPTGIVVTCQDQRSQHKNKDKAMRILRSKLYEMAQEQQ 284
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 213 VEINPNDLKIDTFRASGAGGQHINKTESAIRIT 245
>gi|187918069|ref|YP_001883632.1| peptide chain release factor 1 [Borrelia hermsii DAH]
gi|238689283|sp|B2RZQ6.1|RF1_BORHD RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119860917|gb|AAX16712.1| bacterial peptide chain release factor 1 [Borrelia hermsii DAH]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GRL TS +VAVLP+ +D ++ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRVPITESNGRLQTSAATVAVLPEVEDTDIEINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENR 105
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFENLKKQEQR 289
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 214 IEINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|359403155|ref|ZP_09196062.1| peptide chain release factor 1 [Spiroplasma melliferum KC3]
gi|357968372|gb|EHJ90881.1| peptide chain release factor 1 [Spiroplasma melliferum KC3]
Length = 358
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTST +VAVLP+ ++++ + DLK++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRIPKTESKGRVHTSTATVAVLPEIEEVDFEIKTADLKIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V SQ+ RSQ N+A A+ L+ +YE Q
Sbjct: 247 RITHLPTGVVVTSQDGRSQHDNKALAMQHLRSKLYEEQ 284
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 223 DLKIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|299821847|ref|ZP_07053735.1| peptide chain release factor RF1 [Listeria grayi DSM 20601]
gi|299817512|gb|EFI84748.1| peptide chain release factor RF1 [Listeria grayi DSM 20601]
Length = 358
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 107/194 (55%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA+LP+ +D+E+ + +KD++ +T +TGAGGQ VNTT SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAILPEAEDVEIDIQDKDIRTDTFASTGAGGQSVNTTMSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQIKN+ A+ L+ IY+ +FE R AR
Sbjct: 243 RLTHIPTGIVVSMQDERSQIKNKEKAMKVLRARIYD-KFE-------------REAR--- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
EE D ++ TG + + T + +R+TDHR
Sbjct: 286 --------------------------EEYDANRKSAVGTGDRSERIRTYNFPQNRVTDHR 319
Query: 180 IQRTVYNVAEFMSG 193
I T+ + + M G
Sbjct: 320 IGLTIQKLDQVMEG 333
>gi|341820757|emb|CCC57057.1| peptide chain release factor 1 (RF-1) [Weissella thailandensis
fsh4-2]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +V V+P+ +D+++ +++KDL+V+ R++GAGGQH+N T SAV
Sbjct: 187 VQRVPETESAGRVHTSTATVGVMPEYEDVDIEIEDKDLRVDVYRSSGAGGQHINKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q+ RSQ +NRA A+ LK +Y+ + E +
Sbjct: 247 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKTRVYDYYASQNEAEY 292
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+V+ R++GAGGQH+N T SA R+T
Sbjct: 217 IEIEDKDLRVDVYRSSGAGGQHINKTSSAVRMT 249
>gi|317499018|ref|ZP_07957299.1| peptide chain release factor 1 [Lachnospiraceae bacterium
5_1_63FAA]
gi|291560728|emb|CBL39528.1| bacterial peptide chain release factor 1 (bRF-1)
[butyrate-producing bacterium SSC/2]
gi|316893668|gb|EFV15869.1| peptide chain release factor 1 [Lachnospiraceae bacterium
5_1_63FAA]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 76/98 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST++VA++P+ +D+EV +D D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPATESGGRIHTSTITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ+KN+ AL L+ +YE++
Sbjct: 243 RLTHIPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELE 280
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 VEIDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|253827187|ref|ZP_04870072.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313141390|ref|ZP_07803583.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|253510593|gb|EES89252.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
gi|313130421|gb|EFR48038.1| peptide chain release factor 1 [Helicobacter canadensis MIT
98-5491]
Length = 356
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/102 (57%), Positives = 77/102 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV ++ DL++E RA G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGISV Q+++SQ KN+ AL LK IYE + E Q
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQ 282
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 20 VAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD---SAVRMTHIPTGISVE---S 73
+ +L PKD DEK++ +E + TG + D + +R G VE S
Sbjct: 93 IKILLLPKDPN---DEKNIYLELRAGTGGDEAGIFVGDLFKAYIRYAE-SKGWKVEIISS 148
Query: 74 QEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREP 133
E+ AL K K ++FE +R V+ V + ++ IH T + +A
Sbjct: 149 SENNVGGYKEVIALIKGKGAYSRLKFEGGTHR--VQRVPETESQGRIH-TSAITVAIMPE 205
Query: 134 CTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ V + DL++E RA G GGQ VNTTDSA RIT
Sbjct: 206 VDDVE-----VVINPNDLRIEVFRAGGHGGQCVNTTDSAVRIT 243
>gi|326914097|ref|XP_003203364.1| PREDICTED: peptide chain release factor 1, mitochondrial-like
[Meleagris gallopavo]
Length = 455
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 47/208 (22%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+T S R+ HT T+SV VLPQP++++V +D KDL+++T RA GAGGQHVN TD
Sbjct: 267 VQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTD 326
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
SAVR+ H+PTG+ VE Q++RSQ N+ AL L+ +Y+ E+Q L ++SAR
Sbjct: 327 SAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQ-------LSQEQSAR 379
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRIT 176
+ + T A + + T + + DR+T
Sbjct: 380 KL------------------------------------QLGTRAQSERIRTYNFTQDRVT 403
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDI 204
DHRI N+ E +SG L +LI+ +
Sbjct: 404 DHRISYDARNIKEILSGKEELDKLINRL 431
>gi|296271838|ref|YP_003654469.1| peptide chain release factor 1 [Arcobacter nitrofigilis DSM 7299]
gi|296096013|gb|ADG91963.1| peptide chain release factor 1 [Arcobacter nitrofigilis DSM 7299]
Length = 355
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 78/102 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+EV +D DLK++ RA+G GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEVEIDPGDLKIDVMRASGNGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIP+G+ V +Q+ +SQ KN+ A+ LK +Y+IQ +E+
Sbjct: 241 RITHIPSGLVVTNQDQKSQHKNKDKAMKVLKARLYDIQMQEK 282
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ DLK++ RA+G GGQ VNTTDSA RIT
Sbjct: 211 VEIDPGDLKIDVMRASGNGGQSVNTTDSAVRIT 243
>gi|443473457|ref|ZP_21063481.1| Peptide chain release factor 1 [Pseudomonas pseudoalcaligenes
KF707]
gi|442904194|gb|ELS29310.1| Peptide chain release factor 1 [Pseudomonas pseudoalcaligenes
KF707]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 60/223 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIP+GI VE QE+RSQ KNRA A+A L +L ++ A
Sbjct: 246 VRITHIPSGIVVECQEERSQHKNRAKAMAWL----------------AAKLNDQQEA--- 286
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKR---ATGAGGQHVNTTDSA-DRI 175
A H E D T+R +G + + T + R+
Sbjct: 287 -----------------------AAHKEMSD----TRRLLVGSGDRSERIRTYNYPQGRV 319
Query: 176 TDHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
TDHRI T+Y + + M+GG A++ L++ +++ DQL
Sbjct: 320 TDHRINLTLYALDDVMAGGVEAVIEPLLA-------EYQADQL 355
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 14/92 (15%)
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAV 144
N AKLK FE +R V+ V + ++ IH + + EP A+
Sbjct: 172 NVYAKLK-------FESGAHR--VQRVPETESQGRIHTSACTVAVLPEP-----DEQAAI 217
Query: 145 HLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ DL+V+T RA+GAGGQHVN TDSA RIT
Sbjct: 218 EINPADLRVDTYRASGAGGQHVNKTDSAVRIT 249
>gi|398985057|ref|ZP_10690884.1| peptide chain release factor 1 [Pseudomonas sp. GM24]
gi|399013284|ref|ZP_10715594.1| peptide chain release factor 1 [Pseudomonas sp. GM16]
gi|398114223|gb|EJM04055.1| peptide chain release factor 1 [Pseudomonas sp. GM16]
gi|398154660|gb|EJM43126.1| peptide chain release factor 1 [Pseudomonas sp. GM24]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRARAMA-----------------WLSAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|303228461|ref|ZP_07315294.1| peptide chain release factor 1 [Veillonella atypica
ACS-134-V-Col7a]
gi|303230754|ref|ZP_07317501.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6]
gi|429759622|ref|ZP_19292120.1| peptide chain release factor 1 [Veillonella atypica KON]
gi|302514514|gb|EFL56509.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6]
gi|302516963|gb|EFL58872.1| peptide chain release factor 1 [Veillonella atypica
ACS-134-V-Col7a]
gi|429179583|gb|EKY20830.1| peptide chain release factor 1 [Veillonella atypica KON]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ +++KDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+PTGI V Q+ RSQ++NR A+ L+
Sbjct: 245 RITHLPTGIVVACQDQRSQLQNREKAMRVLR 275
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +KDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 215 IEINDKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|298529663|ref|ZP_07017066.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511099|gb|EFI35002.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans
ASO3-1]
Length = 356
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS V+VA+LP+ ++++V+++ DL+V+ RA+G GGQ VNTTDSAV
Sbjct: 182 VQRVPETESQGRVHTSAVTVAILPEAEEVDVNIEPNDLRVDVFRASGPGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KNRA AL L+ + +I EEQ+ +
Sbjct: 242 RITHIPTGLVVSCQDEKSQHKNRAKALKVLRSRLLQIMEEEQKREY-------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D + +G + + T + R+TDHR
Sbjct: 288 -----------------------------DDNRRAQVGSGDRSERIRTYNFPQSRVTDHR 318
Query: 180 IQRTVYNVAEFMSG 193
I T+YN+ M G
Sbjct: 319 INLTLYNLESVMQG 332
>gi|401679720|ref|ZP_10811644.1| peptide chain release factor 1 [Veillonella sp. ACP1]
gi|400218847|gb|EJO49718.1| peptide chain release factor 1 [Veillonella sp. ACP1]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ +++KDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+PTGI V Q+ RSQ++NR A+ L+
Sbjct: 245 RITHLPTGIVVACQDQRSQLQNREKAMRVLR 275
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +KDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 215 IEINDKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|365879438|ref|ZP_09418861.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
gi|365292622|emb|CCD91392.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 375]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + ++ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------KVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|216263966|ref|ZP_03435960.1| peptide chain release factor 1 [Borrelia afzelii ACA-1]
gi|215980010|gb|EEC20832.1| peptide chain release factor 1 [Borrelia afzelii ACA-1]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|373450051|ref|ZP_09542126.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
gi|371932744|emb|CCE77114.1| peptide chain release factor 1 [Wolbachia pipientis wAlbB]
Length = 363
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VA+LP+ ++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESSGRLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ KN+A AL L+ +YEI+ +++E
Sbjct: 246 RVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKE 288
Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+EEKDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 216 FEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVT 248
>gi|167766740|ref|ZP_02438793.1| hypothetical protein CLOSS21_01246 [Clostridium sp. SS2/1]
gi|167711494|gb|EDS22073.1| peptide chain release factor 1 [Clostridium sp. SS2/1]
Length = 366
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 76/98 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST++VA++P+ +D+EV +D D K + RA+G GGQ VNTTDSAV
Sbjct: 192 VQRIPATESGGRIHTSTITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSAV 251
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ+KN+ AL L+ +YE++
Sbjct: 252 RLTHIPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELE 289
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 222 VEIDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 254
>gi|429762333|ref|ZP_19294729.1| peptide chain release factor 1 [Anaerostipes hadrus DSM 3319]
gi|429181841|gb|EKY22979.1| peptide chain release factor 1 [Anaerostipes hadrus DSM 3319]
Length = 366
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 76/98 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST++VA++P+ +D+EV +D D K + RA+G GGQ VNTTDSAV
Sbjct: 192 VQRIPATESGGRIHTSTITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSAV 251
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ+KN+ AL L+ +YE++
Sbjct: 252 RLTHIPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELE 289
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ D K + RA+G GGQ VNTTDSA R+T
Sbjct: 222 VEIDMNDCKFDVFRASGNGGQCVNTTDSAVRLT 254
>gi|330444669|ref|YP_004377655.1| peptide chain release factor 1 [Chlamydophila pecorum E58]
gi|328807779|gb|AEB41952.1| peptide chain release factor 1 [Chlamydophila pecorum E58]
Length = 363
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 51/220 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP-KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS ++VA+LP+P +D E+ +DEKDL+++T RA+GAGGQHVN TDSA
Sbjct: 185 VQRVPETETQGRVHTSAITVAILPEPAEDDEIIIDEKDLRIDTFRASGAGGQHVNVTDSA 244
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTG+ V Q++RSQ KN+ A+ LK I + + ++++ RSA+
Sbjct: 245 VRITHLPTGVVVTCQDERSQHKNKDKAMRILKARIRDAEMQKRQK----EASAMRSAQV- 299
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
+G + + T + S +R+TDH
Sbjct: 300 --------------------------------------GSGDRSERIRTYNFSQNRVTDH 321
Query: 179 RIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
RI T+Y++ + M G L + + + H Y QLLS
Sbjct: 322 RIGLTLYSLDKVMEGD--LDPITTALVSHAYH----QLLS 355
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPTG-- 68
RL ++ V P P D DL V + G GG+ VRM H+ +
Sbjct: 92 RLRKVLENLLVPPDPDD--------DLNVIMELRAGTGGEEAALFVGDCVRMYHLYSAAK 143
Query: 69 -----ISVESQEDRSQIKNRANALAK--LKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
+ S+ D K ++ +KR + Q+E +R V+ V + + +H
Sbjct: 144 GWKYEVLSSSESDLKGYKEYVMGISGTGVKRFL---QYEAGTHR--VQRVPETETQGRVH 198
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP + ++EKDL+++T RA+GAGGQHVN TDSA RIT
Sbjct: 199 TSAITVAILPEPAED-----DEIIIDEKDLRIDTFRASGAGGQHVNVTDSAVRIT 248
>gi|111115018|ref|YP_709636.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|384206694|ref|YP_005592415.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|119361512|sp|Q0SNW8.1|RF1_BORAP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|110890292|gb|ABH01460.1| peptide chain release factor 1 [Borrelia afzelii PKo]
gi|342856577|gb|AEL69425.1| peptide chain release factor 1 [Borrelia afzelii PKo]
Length = 357
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYSMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|356503962|ref|XP_003520768.1| PREDICTED: peptide chain release factor 1-like [Glycine max]
Length = 415
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQH NTT+SAV
Sbjct: 239 VQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDLRIDTYRSGGSGGQHANTTNSAV 298
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI + Q++RSQ N+A AL L +YE++
Sbjct: 299 RVTHIPTGIMITIQDERSQHMNKAKALKVLCAKLYEME 336
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 22/159 (13%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTH---IPTGISVE----SQEDRS 78
PKD DE+D +E + TG + D RM + G E +Q D
Sbjct: 157 PKD---DADERDCILEVRAGTGGEEASLFAMD-IFRMYEKYALEKGWKFEVVDIAQSDHK 212
Query: 79 QIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLP 138
K + A+A + +++FE +R VT++S R IH + + LP
Sbjct: 213 GYKEASAAIAG-DGVFRKLKFESGIHRVQRVPVTEKSGR--IHTSAVSV-------AILP 262
Query: 139 SSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ V L+ +DL+++T R+ G+GGQH NTT+SA R+T
Sbjct: 263 QADEVDVQLKNEDLRIDTYRSGGSGGQHANTTNSAVRVT 301
>gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis]
gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis]
Length = 422
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQH NTT+SAV
Sbjct: 246 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAV 305
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG++V Q++RSQ N+A AL L +YEI+
Sbjct: 306 RVTHLPTGMTVSIQDERSQHMNKAKALKVLCAKLYEIE 343
Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQH NTT+SA R+T
Sbjct: 276 VQLRNEDLRIDTYRSGGSGGQHANTTNSAVRVT 308
>gi|260914191|ref|ZP_05920664.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325]
gi|260631824|gb|EEX50002.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325]
Length = 360
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 118/217 (54%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A AL+ L I + + E QE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALSVLASRIVQAEKERQEQQ---QADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + LP P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|367472871|ref|ZP_09472444.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
gi|365274841|emb|CCD84912.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 285]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + ++ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------KVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|384213954|ref|YP_005605117.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
gi|354952850|dbj|BAL05529.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 6]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 48/199 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVEIKNDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + R+ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------RVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAM 196
HRI T+Y + + ++G A+
Sbjct: 320 HRINLTLYKLPQVIAGEAL 338
>gi|392375295|ref|YP_003207128.1| peptide chain release factor 1 [Candidatus Methylomirabilis
oxyfera]
gi|258592988|emb|CBE69299.1| peptide chain release factor 1 [Candidatus Methylomirabilis
oxyfera]
Length = 358
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 75/91 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTSTV+VAVLP+ +D+E+ +D KDL+++ R+TG GGQ VNTTDSAV
Sbjct: 186 VQRVPVTESSGRIHTSTVTVAVLPEAEDVEIQIDPKDLRIDVFRSTGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+PTG+ V Q+++SQ KNRA A+ L+
Sbjct: 246 RITHLPTGMVVSCQDEKSQHKNRAKAMKVLR 276
Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KDL+++ R+TG GGQ VNTTDSA RIT
Sbjct: 216 IQIDPKDLRIDVFRSTGPGGQSVNTTDSAVRIT 248
>gi|438118391|ref|ZP_20871368.1| peptide chain release factor 1 [Spiroplasma melliferum IPMB4A]
gi|434155818|gb|ELL44736.1| peptide chain release factor 1 [Spiroplasma melliferum IPMB4A]
Length = 358
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTST +VAVLP+ ++++ + DLK++T RA+GAGGQHVNTTDSAV
Sbjct: 187 VQRIPKTESKGRVHTSTATVAVLPEIEEVDFEIKTADLKIDTYRASGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V SQ+ RSQ N+A A+ L+ +YE Q
Sbjct: 247 RITHLPTGVVVTSQDGRSQHDNKALAMQHLRSKLYEEQ 284
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 223 DLKIDTYRASGAGGQHVNTTDSAVRIT 249
>gi|365887823|ref|ZP_09426640.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
gi|365336576|emb|CCD99171.1| peptide chain release factor 1 [Bradyrhizobium sp. STM 3809]
Length = 361
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + ++ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------KVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
>gi|254465069|ref|ZP_05078480.1| peptide chain release factor 1 [Rhodobacterales bacterium Y4I]
gi|206685977|gb|EDZ46459.1| peptide chain release factor 1 [Rhodobacterales bacterium Y4I]
Length = 351
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 117/214 (54%), Gaps = 48/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+++H+D D++++T RA+GAGGQHVNTTDSAV
Sbjct: 179 VQRVPATESGGRIHTSAATVAVLPEAEDVDIHIDANDIRIDTMRASGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V S E +SQ +NR A+ LK +Y+++ + R+ ++RSA
Sbjct: 239 RITHLPTGIIVTSSE-KSQHRNREIAMQVLKTRLYDLERQ--------RIDSERSADRA- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
++ +G + + T + R+TDHR
Sbjct: 289 ----------------------------------SQVGSGDRSERIRTYNFPQGRMTDHR 314
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRI 213
I T+Y + + M G L E+I D D Q R+
Sbjct: 315 INLTLYKLDQVMGGD--LDEII-DALTADNQARL 345
>gi|346467731|gb|AEO33710.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 78/95 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE+SGR+HTST++VAV+P P +++V L+ KDL ++TKRA+G GGQHVNTT+SAV
Sbjct: 245 VQRVPATERSGRIHTSTMAVAVMPMPSEVDVALNPKDLVMKTKRASGPGGQHVNTTESAV 304
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
++ H+PTGI VES ++RSQ+ N+ AL L+ +Y
Sbjct: 305 QIQHVPTGIMVESAQERSQLMNKEIALKILRAKLY 339
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R T+RS R IH + + P V L KDL ++TK
Sbjct: 236 LKFESGVHRVQRVPATERSGR--IHTSTMAVAVMPMPSEV------DVALNPKDLVMKTK 287
Query: 157 RATGAGGQHVNTTDSADRI 175
RA+G GGQHVNTT+SA +I
Sbjct: 288 RASGPGGQHVNTTESAVQI 306
>gi|385226349|ref|YP_005786273.1| peptide chain release factor 1 [Helicobacter pylori SNT49]
gi|344331262|gb|AEN16292.1| peptide chain release factor 1 [Helicobacter pylori SNT49]
Length = 352
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +++A++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRIPETESQGRIHTSAITIAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|332637164|ref|ZP_08416027.1| peptide chain release factor 1 [Weissella cibaria KACC 11862]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +V V+P+ +D+++ +++KDL+V+ R++GAGGQHVN T SAV
Sbjct: 187 VQRVPETESAGRVHTSTATVGVMPEYEDVDIEIEDKDLRVDVYRSSGAGGQHVNKTSSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+P+GI V Q+ RSQ +NRA AL LK +Y+ + E +
Sbjct: 247 RMTHLPSGIVVAMQDQRSQQQNRAKALEILKARVYDYYASQNEAEY 292
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+V+ R++GAGGQHVN T SA R+T
Sbjct: 217 IEIEDKDLRVDVYRSSGAGGQHVNKTSSAVRMT 249
>gi|386347700|ref|YP_006045949.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
gi|339412667|gb|AEJ62232.1| Peptide chain release factor 1 [Spirochaeta thermophila DSM 6578]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+P++ EV + +D++V+ R++G GGQ VNTTDSAV
Sbjct: 185 VQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +YE++ + QE S R +
Sbjct: 245 RITHLPTGLVVSCQDEKSQHKNKAKALKILRARLYEMEKQRQE-----------SERAAM 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ +G + + T + +R+TDHR
Sbjct: 294 RRSQI--------------------------------GSGDRSERIRTYNFPQNRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIR 205
I T+Y + M G L E+I +R
Sbjct: 322 INLTLYKLEAVMDGD--LDEIIDALR 345
>gi|225019405|ref|ZP_03708597.1| hypothetical protein CLOSTMETH_03358 [Clostridium methylpentosum
DSM 5476]
gi|224947822|gb|EEG29031.1| hypothetical protein CLOSTMETH_03358 [Clostridium methylpentosum
DSM 5476]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTSTV+VAVLP+ +++E ++ D++V+T RA+GAGGQHVN T+SA+
Sbjct: 187 VQRVPETEASGRIHTSTVTVAVLPEAEEVEFDINPTDIQVDTFRASGAGGQHVNKTESAI 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+T++PTG+ VE Q++RSQ KN+ A+ L+ +YE +E + ++ ++R A+
Sbjct: 247 RLTYLPTGLVVECQDERSQHKNKDKAMKILRTRLYEQAMKEATD----KIASERKAQV-- 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
TG + + T + RITDHR
Sbjct: 301 -------------------------------------GTGDRSERIRTYNYPQGRITDHR 323
Query: 180 IQRTVYNVAEFMSG 193
I T+Y++ + M+G
Sbjct: 324 IGLTLYHLEQNMNG 337
>gi|224534432|ref|ZP_03675010.1| peptide chain release factor 1 [Borrelia spielmanii A14S]
gi|224514534|gb|EEF84850.1| peptide chain release factor 1 [Borrelia spielmanii A14S]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 50/197 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GRL TS +VAVLP ++ E+ ++EKDL+++ R++GAGGQHVNTTDSAV
Sbjct: 184 VQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ-FEEQENRWVVRLVTKRSARTI 119
R+TH+PTGI V+ Q +RSQ KN+ A+ L+ +YE + ++QE R R
Sbjct: 244 RITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNR---------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
K+ G+G + + T + +RIT
Sbjct: 294 ------------------------------------KQQVGSGDRSERIRTYNFPQNRIT 317
Query: 177 DHRIQRTVYNVAEFMSG 193
DHR T+Y + EFM G
Sbjct: 318 DHRANITLYKLEEFMQG 334
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ + +LPQ ++ D K++ +E + G GG+ + + +I E ++ +
Sbjct: 96 IKILLLPQDEN-----DSKNIIIEIR--AGTGGEEAALFANNLYGMYIKYS---EKKKWK 145
Query: 78 SQIKN-RANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
++I N L K +I+EI+ ++ + R R I + +
Sbjct: 146 TEIINFNETELGGFKEIIFEIKGKDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAV 205
Query: 137 LPS-SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP+ + + EKDL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 206 LPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTTDSAVRIT 246
>gi|190570518|ref|YP_001974876.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019274|ref|ZP_03335081.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238054477|sp|B3CL87.1|RF1_WOLPP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|190356790|emb|CAQ54152.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995383|gb|EEB56024.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 363
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VA+LP+ ++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESSGRLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ KN+A AL L+ +YEI+ +++E
Sbjct: 246 RVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKE 288
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+EEKDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 216 FEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVT 248
>gi|49475009|ref|YP_033050.1| peptide chain release factor 1 [Bartonella henselae str. Houston-1]
gi|61214620|sp|Q6G5T7.1|RF1_BARHE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|49237814|emb|CAF27009.1| Peptide chain release factor 1 [Bartonella henselae str. Houston-1]
Length = 359
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ ++I++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA AL L+ +++I+ ++ EN
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAEN---------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+ +++ +G + + T + R+TDHR
Sbjct: 288 ---------------------------ERSASRKSQVGSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGA--MLHELISD 203
I T+Y + + G ++H LISD
Sbjct: 321 INLTLYKLDRVLEGDLDELIHALISD 346
>gi|398832820|ref|ZP_10590970.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
gi|398222599|gb|EJN08969.1| peptide chain release factor 1 [Herbaspirillum sp. YR522]
Length = 359
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V ++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I ++Q +Q+++
Sbjct: 244 VRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSK 289
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 215 VDINPADLRIDTYRASGAGGQHINKTDSAVRIT 247
>gi|83859678|ref|ZP_00953198.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
gi|83852037|gb|EAP89891.1| peptide chain release factor 1 [Oceanicaulis sp. HTCC2633]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 113/211 (53%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+P+++E+ + ++D++++T RA+GAGGQHVN T+SAV
Sbjct: 183 VQRVPVTESGGRIHTSAATVAVLPEPENVEIDIKDEDIRIDTMRASGAGGQHVNKTESAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTHIPTGI V S E +SQ +NRA A+ LK +YE + E K AR
Sbjct: 243 RMTHIPTGIVVVSSE-KSQHQNRAIAMQVLKARLYEKERRE-----------KDEARA-- 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R++D
Sbjct: 289 --------------------------------AERKGQVGSGDRSERIRTYNFPQGRVSD 316
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
HRI T+Y + E +SG A L E+I + D
Sbjct: 317 HRINLTLYKLDEILSGDA-LDEVIDALLSED 346
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 91 KRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKD 150
K + +++FE +R VT+ R IH + + + EP + ++++D
Sbjct: 168 KGVFGKMKFESGVHRVQRVPVTESGGR--IHTSAATVAVLPEPENV------EIDIKDED 219
Query: 151 LKVETKRATGAGGQHVNTTDSADRIT 176
++++T RA+GAGGQHVN T+SA R+T
Sbjct: 220 IRIDTMRASGAGGQHVNKTESAVRMT 245
>gi|338731422|ref|YP_004660814.1| peptide chain release factor 1 (bRF-1) [Thermotoga thermarum DSM
5069]
gi|335365773|gb|AEH51718.1| bacterial peptide chain release factor 1 (bRF-1) [Thermotoga
thermarum DSM 5069]
Length = 352
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ ++EV +D KDLK+ET +A+G GGQ+VN T+SAV
Sbjct: 177 VQRVPITESSGRIHTSTATVAVLPEVSEVEVVIDPKDLKIETCKASGHGGQYVNKTESAV 236
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q +RSQ +NR A A L+ +YE++
Sbjct: 237 RITHIPTGIIVTCQSERSQHQNRERAFAILRSKLYELK 274
Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDLK+ET +A+G GGQ+VN T+SA RIT
Sbjct: 207 VVIDPKDLKIETCKASGHGGQYVNKTESAVRIT 239
>gi|406908258|gb|EKD48818.1| Peptide chain release factor 1 [uncultured bacterium]
Length = 228
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 116/219 (52%), Gaps = 46/219 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ K++EV ++ DL+++ RA+GAGGQHVNTTDSAV
Sbjct: 51 VQRVPATETQGRVHTSTATVAVLPEAKEVEVTINPSDLRIDVYRASGAGGQHVNTTDSAV 110
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ KN+A A+ L I Q E++
Sbjct: 111 RITHIPTGVVVACQDERSQHKNKAKAMKILGARILAAQEEKK------------------ 152
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
L+E + + TG + V T + +R+TDH+
Sbjct: 153 -------------------------LQEMSEQRKGLIGTGERSEKVRTYNYPQNRVTDHQ 187
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ T+ + + M G + E+I +RQ ++ R + LS
Sbjct: 188 VNITLKKLDQVMLGN--MDEIIDALRQGEHDARKELFLS 224
>gi|353327645|ref|ZP_08969972.1| peptide chain release factor 1 [Wolbachia endosymbiont wVitB of
Nasonia vitripennis]
Length = 363
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VA+LP+ ++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESSGRLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ KN+A AL L+ +YEI+ +++E
Sbjct: 246 RVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKE 288
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+EEKDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 216 FEIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVT 248
>gi|238019080|ref|ZP_04599506.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748]
gi|237864335|gb|EEP65625.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ ++EKDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+P+GI V Q+ RSQ++NR A+ L+
Sbjct: 245 RITHLPSGIVVACQDQRSQLQNREKAMRVLR 275
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 215 IEVNEKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|220933707|ref|YP_002512606.1| peptide chain release factor 1 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|254790905|sp|B8GLA1.1|RF1_THISH RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|219995017|gb|ACL71619.1| peptide chain release factor 1 [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/194 (38%), Positives = 103/194 (53%), Gaps = 43/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+P ++E ++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSAATVAVMPEPDEVEAPEINPADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE Q++RSQ KNRA A++ L ++E EQ + + T++S
Sbjct: 246 IRLTHLPTGIVVECQDERSQHKNRARAMSLLAAKLFEA---EQARQQAEQSATRKSLVGS 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P RITDHR
Sbjct: 303 GDRSE------RIRTYNFPQG---------------------------------RITDHR 323
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + M+G
Sbjct: 324 INLTLYKLDAVMAG 337
>gi|269798159|ref|YP_003312059.1| peptide chain release factor 1 [Veillonella parvula DSM 2008]
gi|416999011|ref|ZP_11939680.1| peptide chain release factor 1 [Veillonella parvula
ACS-068-V-Sch12]
gi|269094788|gb|ACZ24779.1| peptide chain release factor 1 [Veillonella parvula DSM 2008]
gi|333977164|gb|EGL78023.1| peptide chain release factor 1 [Veillonella parvula
ACS-068-V-Sch12]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ ++EKDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+P+GI V Q+ RSQ++NR A+ L+
Sbjct: 245 RITHLPSGIVVACQDQRSQLQNREKAMRVLR 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 22 VLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIK 81
VL PKD D+K++ +E + GAGG A + + T + ESQ R +I
Sbjct: 99 VLLLPKDPN---DDKNIIIEIR--GGAGGDEAALF--AGDLFRMYTKYA-ESQGWRCEII 150
Query: 82 NRANA--LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPS 139
+ AN L K +I+ + E ++ R R T+ + LP
Sbjct: 151 D-ANEPELGGFKEVIFSVDGENVYSKMKFESGVHRVQRVPATETQGRVHTSTVTVAVLPE 209
Query: 140 SCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 210 MEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|420490087|ref|ZP_14988673.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13]
gi|420523927|ref|ZP_15022337.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13b]
gi|393109430|gb|EJC09961.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13]
gi|393133086|gb|EJC33503.1| peptide chain release factor 1 [Helicobacter pylori Hp P-13b]
Length = 352
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E L+ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAITVAIMPEVDDVEATLNPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQ 285
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 22/31 (70%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
L DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 215 LNPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|384227612|ref|YP_005619357.1| peptide chain release factor 1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538552|gb|AEO08529.1| peptide chain release factor 1 [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 114/213 (53%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLP-QPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTST +VAV+P PK + ++ DLK++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPETESQGRIHTSTCTVAVMPVTPKAEKEVINFADLKIDTFRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEE--QENRWVVRLVTKRSAR 117
+R+THIPTG VE Q++RSQ KN+A AL+ L IY E+ QEN + +++ R
Sbjct: 244 IRITHIPTGNVVECQDERSQHKNKAKALSILSARIYAATLEKKHQENSSMRKILLGTGER 303
Query: 118 TIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITD 177
+ +RT P +RITD
Sbjct: 304 SDRNRT-----------YNFPQ---------------------------------NRITD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HRI T+Y + E + G L+ LI I Q +YQ
Sbjct: 320 HRINLTIYKLDEVLQG--RLNLLIDPITQ-EYQ 349
>gi|291550093|emb|CBL26355.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus
torques L2-14]
Length = 356
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VAV+P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH PTGI + SQ ++SQ++N+ A L+ +Y+++ E+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKKQ 285
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|448747308|ref|ZP_21728968.1| Peptide chain release factor 1 [Halomonas titanicae BH1]
gi|445565000|gb|ELY21113.1| Peptide chain release factor 1 [Halomonas titanicae BH1]
Length = 362
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 115/215 (53%), Gaps = 53/215 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D+ ++ ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVMPEVDDVGDIDINPSDLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+TH+PTG+ VE QE+RSQ KNRA A+ AKLKR + Q + Q + +RS
Sbjct: 246 IRITHLPTGVVVECQEERSQHKNRAKAMSLLAAKLKRNAVDSQRQTQAD-------ARRS 298
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R+E R P RI
Sbjct: 299 LVGSGDRSE------RIRTYNFPQG---------------------------------RI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
TDHRI T+Y + E +S G L ++IS + H+YQ
Sbjct: 320 TDHRINLTLYKLNEVVS-GEQLDDVISPL-IHEYQ 352
>gi|404399170|ref|ZP_10990754.1| peptide chain release factor 1 [Pseudomonas fuscovaginae UPB0736]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+++T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIP+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHIPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E+ L V +G + + T + R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E M+GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEIMAGGVDAVIEPLLA-------EYQADQL 355
>gi|398969075|ref|ZP_10682688.1| peptide chain release factor 1 [Pseudomonas sp. GM30]
gi|398142769|gb|EJM31660.1| peptide chain release factor 1 [Pseudomonas sp. GM30]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRARAMA-----------------WLSAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|304394129|ref|ZP_07376052.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
gi|303293569|gb|EFL87946.1| peptide chain release factor 1 [Ahrensia sp. R2A130]
Length = 358
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 66/216 (30%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRVHTSAATVAVLPEAEDVDIEIRNEDIRIDTMRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V S E +SQ +NRANA+ +L+ +Y+++ +
Sbjct: 243 RITHIPTGVVVLSTE-KSQHQNRANAMKELRTRLYDMERQ-------------------- 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI----- 175
KV+ +RA GQ V + D ++RI
Sbjct: 282 -------------------------------KVDQERADSRKGQ-VGSGDRSERIRTYNF 309
Query: 176 -----TDHRIQRTVYNVAEFMSGGA---MLHELISD 203
+DHRI T+Y + + ++G ML LI+D
Sbjct: 310 PQGRVSDHRINLTLYKLDKMIAGEGLDEMLDALITD 345
>gi|77460969|ref|YP_350476.1| peptide chain release factor 1 [Pseudomonas fluorescens Pf0-1]
gi|119361582|sp|Q3K6W9.1|RF1_PSEPF RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|77384972|gb|ABA76485.1| peptide chain release factor RF-1 [Pseudomonas fluorescens Pf0-1]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRARAMA-----------------WLSAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|383454516|ref|YP_005368505.1| peptide chain release factor 1 [Corallococcus coralloides DSM 2259]
gi|380733977|gb|AFE09979.1| peptide chain release factor 1 [Corallococcus coralloides DSM 2259]
Length = 363
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 114/211 (54%), Gaps = 47/211 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++V+V+P+ +D++V ++ D++++ R+TG+GGQ VNTTDSAV
Sbjct: 182 VQRVPATETQGRIHTSTITVSVMPEAEDVDVQVNPADIEMQVMRSTGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H P+GI V+ Q+++SQ KNRA A+ L+ +YEI+ E N
Sbjct: 242 RLIHKPSGIVVKCQQEKSQGKNRAMAMRMLRAKLYEIEQERIRN---------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
E+D + TG + + T + DR+TDHR
Sbjct: 286 ---------------------------ERDSMRRGQVGTGDRSEKIRTYNFPQDRLTDHR 318
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I TV+N+ M G + E+I+ R H YQ
Sbjct: 319 IGLTVHNLPAIMVGN--VDEVITACRTH-YQ 346
>gi|56476056|ref|YP_157645.1| peptide chain release factor 1 [Aromatoleum aromaticum EbN1]
gi|81598974|sp|Q5P7G7.1|RF1_AZOSE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|56312099|emb|CAI06744.1| peptide chain release factor 1 (RF-1) [Aromatoleum aromaticum EbN1]
Length = 359
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQR+P TE GR+HTS +VAV+P+ ++E V+++ DL+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRIPVTETQGRIHTSACTVAVMPEADEVEAVNINPADLRIDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ +NRA A++ L I + Q EQ+ R
Sbjct: 244 VRITHLPTGIVVECQDDRSQHRNRAQAMSVLAARIQDRQLREQQAR 289
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 143 AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
AV++ DL+++T RA+GAGGQH+N TDSA RIT
Sbjct: 214 AVNINPADLRIDTFRASGAGGQHINKTDSAVRIT 247
>gi|212697120|ref|ZP_03305248.1| hypothetical protein ANHYDRO_01686 [Anaerococcus hydrogenalis DSM
7454]
gi|212675895|gb|EEB35502.1| hypothetical protein ANHYDRO_01686 [Anaerococcus hydrogenalis DSM
7454]
Length = 263
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 50/208 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ ++++ +D D++ + R++G GGQ VNTTDSAV
Sbjct: 89 VQRVPETESGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTDSAV 148
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ L+ +YE+ E+E R
Sbjct: 149 RLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRARLYEM---EEEKR--------------- 190
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTDSA-DRITD 177
+K++ K G G + + T + RITD
Sbjct: 191 ---------------------------QKEISDNRKSQVGTGDRSERIRTYNYPQGRITD 223
Query: 178 HRIQRTVYNVAEFMSGG--AMLHELISD 203
HRI +T+Y + +F+ G M+ LI++
Sbjct: 224 HRINKTIYQLDDFLDGNIEEMIDSLITE 251
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPTGISVESQED 76
+ + ++PQ + D KD+ VE + GAGG+ + RM H+ ED
Sbjct: 1 MKILLIPQDPN-----DHKDVIVEIR--AGAGGEEAGLFAGNLYRMYHMYADKQNYKTED 53
Query: 77 RSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
I + + +K + ++ E ++ R R + I
Sbjct: 54 ---IDVSSQGIGGMKEATFIVRGEGAYSKLKYESGVHRVQRVPETESGGRIHTSTATVAV 110
Query: 137 LPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + + ++ D++ + R++G GGQ VNTTDSA R+T
Sbjct: 111 LPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTDSAVRLT 151
>gi|389695992|ref|ZP_10183634.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
gi|388584798|gb|EIM25093.1| peptide chain release factor 1 [Microvirga sp. WSM3557]
Length = 362
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V L++ DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEDVDVVLNDADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ KNRA A+A L+ +Y+ +
Sbjct: 246 RITHIPTGTVVFVQDERSQHKNRARAMALLRARLYDAE 283
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L + DLK++T RA GAGGQHVN T+SA RIT
Sbjct: 216 VVLNDADLKIDTMRAQGAGGQHVNKTESAIRIT 248
>gi|282850388|ref|ZP_06259767.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745]
gi|294792026|ref|ZP_06757174.1| peptide chain release factor 1 [Veillonella sp. 6_1_27]
gi|294793891|ref|ZP_06759028.1| peptide chain release factor 1 [Veillonella sp. 3_1_44]
gi|282579881|gb|EFB85285.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745]
gi|294455461|gb|EFG23833.1| peptide chain release factor 1 [Veillonella sp. 3_1_44]
gi|294457256|gb|EFG25618.1| peptide chain release factor 1 [Veillonella sp. 6_1_27]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 76/91 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D+++ ++EKDLK++T RA+GAGGQH+N T+SAV
Sbjct: 185 VQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK 91
R+TH+P+GI V Q+ RSQ++NR A+ L+
Sbjct: 245 RITHLPSGIVVACQDQRSQLQNREKAMRVLR 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 22 VLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIK 81
VL PKD D+K++ +E + GAGG A + + T + ESQ R +I
Sbjct: 99 VLLLPKDPN---DDKNIIIEIR--GGAGGDEAALF--AGDLFRMYTKYA-ESQGWRCEII 150
Query: 82 NRANA--LAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPS 139
+ AN L K +I+ + E ++ R R T+ + LP
Sbjct: 151 D-ANEPELGGFKEVIFSVDGENVYSKMKFESGVHRVQRVPATETQGRVHTSTVTVAVLPE 209
Query: 140 SCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDLK++T RA+GAGGQH+N T+SA RIT
Sbjct: 210 MEDVDIEVNEKDLKIDTYRASGAGGQHINKTESAVRIT 247
>gi|225568388|ref|ZP_03777413.1| hypothetical protein CLOHYLEM_04465 [Clostridium hylemonae DSM
15053]
gi|225162616|gb|EEG75235.1| hypothetical protein CLOHYLEM_04465 [Clostridium hylemonae DSM
15053]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTSTV+VA++P+ ++++V +DEKD++++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTVTVAIMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH PTGI + SQ ++SQ++N+ A L+ +Y+++ E+++
Sbjct: 243 RLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLEMEKKQ 285
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAE 189
V ++EKD++++ RA+G GGQ VNTTDSA R+T + +Y+ E
Sbjct: 213 VVIDEKDIRIDVMRASGNGGQCVNTTDSAVRLTHYPTGIVIYSQTE 258
>gi|88704041|ref|ZP_01101756.1| Peptide chain release factor 1 [Congregibacter litoralis KT71]
gi|88701868|gb|EAQ98972.1| Peptide chain release factor 1 [Congregibacter litoralis KT71]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+L +P+++E V +++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAILAEPEELEAVEINKADLRVDTYRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQ-ENRWVVRLVTKR 114
VR+TH+PTGI VE Q++RSQ KNRA A+ AKL + E Q EQ E R + R
Sbjct: 246 VRLTHLPTGIVVECQDERSQHKNRARAMSLLQAKLDSVAEESQASEQAEQRRNLVGTGDR 305
Query: 115 SARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADR 174
S R + P R
Sbjct: 306 SDRIRTY--------------NFPQG---------------------------------R 318
Query: 175 ITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
+TDHRI T+Y + E M+G + ++ +RQ + + DQL
Sbjct: 319 VTDHRINLTLYKLDEVMAGD--MEAVLGPLRQ---EHQADQL 355
>gi|424924881|ref|ZP_18348242.1| peptide chain release factor 1 [Pseudomonas fluorescens R124]
gi|404306041|gb|EJZ60003.1| peptide chain release factor 1 [Pseudomonas fluorescens R124]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+PTGI VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHLPTGIVVECQEERSQHKNRARAMA-----------------WLSAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|420406039|ref|ZP_14905212.1| peptide chain release factor 1 [Helicobacter pylori CPY6271]
gi|393021858|gb|EJB22988.1| peptide chain release factor 1 [Helicobacter pylori CPY6271]
Length = 352
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 77/103 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VA++P+ D+EV ++ DLK+E RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPGTESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PT ISV Q+++SQ KN+ AL LK +YE Q EEQ+
Sbjct: 243 RITHLPTNISVSMQDEKSQHKNKDKALKILKVRLYEKQIEEQQ 285
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + DLK+E RA G GGQ VNTTDSA RIT
Sbjct: 213 VSINPSDLKIEVFRAGGHGGQCVNTTDSAVRIT 245
>gi|452944167|ref|YP_007500332.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
gi|452882585|gb|AGG15289.1| peptide chain release factor 1 [Hydrogenobaculum sp. HO]
Length = 356
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 46/203 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAVLP+ + EV ++ +DL++ET RA+GAGGQ+VNTT+SAV
Sbjct: 185 VQRVPITESGGRIHTSTITVAVLPEADETEVIINPQDLRIETFRASGAGGQYVNTTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGIS+ Q++RSQ++N+ A+ R++Y AR
Sbjct: 245 RITHIPTGISISCQDERSQLQNKLKAM----RILY--------------------AR--- 277
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
L EE D + + + TG + + T + S +R+TDHR
Sbjct: 278 ----------------LKDFYEKQKKEETDKERKEQVGTGERSEKIRTYNFSQNRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELIS 202
I T++ + + + G L ++IS
Sbjct: 322 INLTLHKLQDVLDGD--LDDIIS 342
>gi|415942784|ref|ZP_11555980.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
gi|407758794|gb|EKF68568.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30]
Length = 355
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ ++E V ++ D++++T RA+GAGGQH+N TDSA
Sbjct: 180 VQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSA 239
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
VR+TH+PTGI VE Q+DRSQ KN+A A+ L I ++Q EQ+++
Sbjct: 240 VRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSK 285
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + D++++T RA+GAGGQH+N TDSA RIT
Sbjct: 211 VDINPADIRIDTYRASGAGGQHINKTDSAVRIT 243
>gi|163850388|ref|YP_001638431.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218528948|ref|YP_002419764.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240137464|ref|YP_002961935.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254559642|ref|YP_003066737.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|418059797|ref|ZP_12697735.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
gi|226739112|sp|A9W1A4.1|RF1_METEP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|254790888|sp|B7L246.1|RF1_METC4 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|163661993|gb|ABY29360.1| peptide chain release factor 1 [Methylobacterium extorquens PA1]
gi|218521251|gb|ACK81836.1| peptide chain release factor 1 [Methylobacterium extorquens CM4]
gi|240007432|gb|ACS38658.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1]
gi|254266920|emb|CAX22719.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4]
gi|373566681|gb|EHP92672.1| Peptide chain release factor 1 [Methylobacterium extorquens DSM
13060]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 108/197 (54%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++ ++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEEVDIVVNEADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V QE+RSQ KNRA A++ L+ +++ + K SAR
Sbjct: 246 RITHIPTGVVVFVQEERSQHKNRARAMSLLRSKLFDAE-----------RTAKDSARA-- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 293 ----------------------------ADRKAQV--GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGQAL 339
>gi|149377994|ref|ZP_01895719.1| peptide chain release factor 1 [Marinobacter algicola DG893]
gi|149357703|gb|EDM46200.1| peptide chain release factor 1 [Marinobacter algicola DG893]
Length = 361
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 104/194 (53%), Gaps = 43/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAV+P+ + E V +++ DL+V+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVMPEADETEAVEINKSDLRVDTFRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTGI VE QE+RSQ KNRA A++ L +Q EE E + T++S
Sbjct: 246 IRITHIPTGIVVECQEERSQHKNRAKAMSFLAS---RLQNEEIERQQKTMAATRKSLVGS 302
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R+E R P R+TDHR
Sbjct: 303 GDRSE------RIRTYNFPQG---------------------------------RVTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
I T+Y + E +SG
Sbjct: 324 INLTLYKLDEVISG 337
>gi|359395824|ref|ZP_09188876.1| Peptide chain release factor 1 [Halomonas boliviensis LC1]
gi|357970089|gb|EHJ92536.1| Peptide chain release factor 1 [Halomonas boliviensis LC1]
Length = 362
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 115/215 (53%), Gaps = 53/215 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D+ ++ ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVMPEVDDVGDIDINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+TH+PTG+ VE QE+RSQ KNRA A+ AKLKR + Q + Q + +RS
Sbjct: 246 IRITHLPTGVVVECQEERSQHKNRAKAMSLLAAKLKRNAVDSQRQTQAD-------ARRS 298
Query: 116 ARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
R+E R P RI
Sbjct: 299 LVGSGDRSE------RIRTYNFPQG---------------------------------RI 319
Query: 176 TDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
TDHRI T+Y + E +S G L ++IS + H+YQ
Sbjct: 320 TDHRINLTLYKLNEVVS-GEQLDDVISPL-IHEYQ 352
>gi|347759800|ref|YP_004867361.1| translation peptide chain release factor 1 [Gluconacetobacter
xylinus NBRC 3288]
gi|347578770|dbj|BAK82991.1| translation peptide chain release factor 1 [Gluconacetobacter
xylinus NBRC 3288]
Length = 353
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PT I V QE++SQ KNRA A+ L+ +YE
Sbjct: 240 RITHLPTNIVVAMQEEKSQHKNRAKAMKILRARLYE 275
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 210 VEVNEGDLRIDVYRASGAGGQHVNKTESAVRIT 242
>gi|297181249|gb|ADI17443.1| protein chain release factor a [uncultured Rhodospirillales
bacterium HF0070_31K06]
Length = 357
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP T+ GR+HTS +VAVLP+ +++++ +D DL+V+T RA+GAGGQHVN TDSA+
Sbjct: 184 VQRVPTTDSGGRIHTSAATVAVLPEAEEVDIQIDTSDLRVDTYRASGAGGQHVNKTDSAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V+ Q+++SQ KNRA A+ L+ +Y+
Sbjct: 244 RITHLPTGIVVQCQDEKSQHKNRAKAMKVLRARLYD 279
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ DL+V+T RA+GAGGQHVN TDSA RIT
Sbjct: 214 IQIDTSDLRVDTYRASGAGGQHVNKTDSAIRIT 246
>gi|442322337|ref|YP_007362358.1| peptide chain release factor 1 [Myxococcus stipitatus DSM 14675]
gi|441489979|gb|AGC46674.1| peptide chain release factor 1 [Myxococcus stipitatus DSM 14675]
Length = 364
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 106/193 (54%), Gaps = 42/193 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VAV+P+ ++++V ++E D+ + R+TG+GGQ VNTTDSAV
Sbjct: 182 VQRVPATETQGRIHTSTITVAVMPEAEEVDVKINEADIDRQAMRSTGSGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH PTGI V+ Q+++SQ+KN AL L+ IYEI EQE R T+RS
Sbjct: 242 RLTHRPTGIVVKCQQEKSQLKNYNMALRMLRAKIYEI---EQERIRSERDSTRRSQVGTG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E I + P DR+TDHRI
Sbjct: 299 DRSEK-IRTYNFP--------------------------------------QDRLTDHRI 319
Query: 181 QRTVYNVAEFMSG 193
TV+N+ M+G
Sbjct: 320 GLTVHNLPAVMTG 332
>gi|18311184|ref|NP_563118.1| peptide chain release factor 1 [Clostridium perfringens str. 13]
gi|110799590|ref|YP_696880.1| peptide chain release factor 1 [Clostridium perfringens ATCC 13124]
gi|110802815|ref|YP_699476.1| peptide chain release factor 1 [Clostridium perfringens SM101]
gi|168205561|ref|ZP_02631566.1| peptide chain release factor 1 [Clostridium perfringens E str.
JGS1987]
gi|168210131|ref|ZP_02635756.1| peptide chain release factor 1 [Clostridium perfringens B str. ATCC
3626]
gi|168213694|ref|ZP_02639319.1| peptide chain release factor 1 [Clostridium perfringens CPE str.
F4969]
gi|168215831|ref|ZP_02641456.1| peptide chain release factor 1 [Clostridium perfringens NCTC 8239]
gi|169344167|ref|ZP_02865149.1| peptide chain release factor 1 [Clostridium perfringens C str.
JGS1495]
gi|182624062|ref|ZP_02951850.1| peptide chain release factor 1 [Clostridium perfringens D str.
JGS1721]
gi|422346868|ref|ZP_16427782.1| peptide chain release factor 1 [Clostridium perfringens WAL-14572]
gi|422875116|ref|ZP_16921601.1| peptide chain release factor 1 [Clostridium perfringens F262]
gi|20139327|sp|Q8XIB9.1|RF1_CLOPE RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361525|sp|Q0TNB0.1|RF1_CLOP1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119361526|sp|Q0SQY1.1|RF1_CLOPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|18145867|dbj|BAB81908.1| peptide chain release factor 1 [Clostridium perfringens str. 13]
gi|110674237|gb|ABG83224.1| peptide chain release factor 1 [Clostridium perfringens ATCC 13124]
gi|110683316|gb|ABG86686.1| peptide chain release factor 1 [Clostridium perfringens SM101]
gi|169297625|gb|EDS79725.1| peptide chain release factor 1 [Clostridium perfringens C str.
JGS1495]
gi|170662868|gb|EDT15551.1| peptide chain release factor 1 [Clostridium perfringens E str.
JGS1987]
gi|170711762|gb|EDT23944.1| peptide chain release factor 1 [Clostridium perfringens B str. ATCC
3626]
gi|170714864|gb|EDT27046.1| peptide chain release factor 1 [Clostridium perfringens CPE str.
F4969]
gi|177910955|gb|EDT73309.1| peptide chain release factor 1 [Clostridium perfringens D str.
JGS1721]
gi|182382220|gb|EDT79699.1| peptide chain release factor 1 [Clostridium perfringens NCTC 8239]
gi|373225701|gb|EHP48032.1| peptide chain release factor 1 [Clostridium perfringens WAL-14572]
gi|380303914|gb|EIA16208.1| peptide chain release factor 1 [Clostridium perfringens F262]
Length = 360
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+ +++KD+K++ RA+G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTESSGRIHTSTATVAVLPEVDDVEIEINDKDIKIDVFRASGNGGQCVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+G+ V Q+++SQ+KN+ A+ L+ + FE+ E + + R ++
Sbjct: 244 RITHLPSGLVVSCQDEKSQLKNKEKAMKVLRARL----FEQAEAERLAGIAEDRKSQV-- 297
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
TG + + T + R+TDHR
Sbjct: 298 -------------------------------------GTGDRSERIRTYNYPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELISD 203
I T+Y + F+ G +L+ LI++
Sbjct: 321 INMTLYKLDSFLEGDIDEILNALITE 346
>gi|83951817|ref|ZP_00960549.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM]
gi|83836823|gb|EAP76120.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM]
Length = 349
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++H+D D++++T RA+GAGGQHVNTTDSAV
Sbjct: 177 VQRVPETESGGRIHTSAATVAVLPEAEDVDIHIDPSDIRIDTMRASGAGGQHVNTTDSAV 236
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+GI V S E +SQ +NR A+ LK +Y+++
Sbjct: 237 RITHIPSGIVVTSSE-KSQHRNREIAMQVLKTRLYDLE 273
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++ D++++T RA+GAGGQHVNTTDSA RIT
Sbjct: 207 IHIDPSDIRIDTMRASGAGGQHVNTTDSAVRIT 239
>gi|357134763|ref|XP_003568985.1| PREDICTED: peptide chain release factor 1-like [Brachypodium
distachyon]
Length = 417
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 243 VQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 302
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG V Q++RSQ +N+A AL L+ +YE++
Sbjct: 303 RITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEME 340
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 273 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 305
>gi|42520141|ref|NP_966056.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58698355|ref|ZP_00373269.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
gi|81652805|sp|Q73IC2.1|RF1_WOLPM RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|42409878|gb|AAS13990.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58535109|gb|EAL59194.1| peptide chain release factor 1 [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 359
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VA+LP+ ++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ KN+A AL L+ +YEI+ +++E
Sbjct: 246 RVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKE 288
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+EEKDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 218 IEEKDLRIDVYRSSGPGGQSVNTTDSAVRVT 248
>gi|390939259|ref|YP_006402996.1| peptide chain release factor 1 (bRF-1) [Sulfurospirillum barnesii
SES-3]
gi|390192366|gb|AFL67421.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurospirillum
barnesii SES-3]
Length = 355
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 114/213 (53%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS V+VAV+P+ D+E+ + EKDLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPLTESQGRVHTSAVTVAVMPEVDDVEIDIAEKDLKIDVMRSSGNGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+GI V +Q+ +SQ KN+ A+ LK +Y++Q +E R + AR
Sbjct: 241 RITHLPSGIVVVNQDGKSQHKNKDAAMKILKAKLYDMQMQE-------RNAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQ--HVNTTDSA-DRITD 177
K+ G+G + + T + +R+TD
Sbjct: 291 -----------------------------------KQQVGSGDRSARIRTYNYPQNRMTD 315
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HR+ T+Y + M GG + ELI I H YQ
Sbjct: 316 HRVGLTLYRLDAIMEGG-LYDELIDPIIAH-YQ 346
>gi|417886510|ref|ZP_12530654.1| peptide chain release factor 1 [Lactobacillus oris F0423]
gi|341592901|gb|EGS35758.1| peptide chain release factor 1 [Lactobacillus oris F0423]
Length = 362
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 82/106 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+ +++++ +
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAY 293
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KD++V+ R++GAGGQHVN T SA R+T
Sbjct: 218 VDIDPKDIRVDVYRSSGAGGQHVNKTSSAVRMT 250
>gi|339634497|ref|YP_004726138.1| peptide chain release factor 1 [Weissella koreensis KACC 15510]
gi|420162128|ref|ZP_14668888.1| peptide chain release factor 1 [Weissella koreensis KCTC 3621]
gi|338854293|gb|AEJ23459.1| peptide chain release factor 1 [Weissella koreensis KACC 15510]
gi|394744562|gb|EJF33504.1| peptide chain release factor 1 [Weissella koreensis KCTC 3621]
Length = 359
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +V V+P+ +D+++ +++KDL+V+ R++GAGGQH+N T SAV
Sbjct: 186 VQRVPETESAGRVHTSTATVGVMPEYEDVDIKIEDKDLRVDVYRSSGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTH+PTG+ V Q++RSQ +NRA A+ LK +Y + E +
Sbjct: 246 RMTHLPTGVVVAMQDERSQQQNRAKAMEILKTRVYNFYASQNEAEY 291
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+V+ R++GAGGQH+N T SA R+T
Sbjct: 216 IKIEDKDLRVDVYRSSGAGGQHINKTSSAVRMT 248
>gi|225630064|ref|YP_002726855.1| peptide chain release factor 1 [Wolbachia sp. wRi]
gi|225592045|gb|ACN95064.1| peptide chain release factor 1 [Wolbachia sp. wRi]
Length = 357
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VA+LP+ ++++ ++EKDL+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+TH+PTGI V Q+++SQ KN+A AL L+ +YEI+ +++E
Sbjct: 244 RVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKE 286
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+EEKDL+++ R++G GGQ VNTTDSA R+T
Sbjct: 216 IEEKDLRIDVYRSSGPGGQSVNTTDSAVRVT 246
>gi|398842534|ref|ZP_10599713.1| peptide chain release factor 1 [Pseudomonas sp. GM102]
gi|398105631|gb|EJL95718.1| peptide chain release factor 1 [Pseudomonas sp. GM102]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ W+ SA+
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMS-----------------WL-------SAKLN 281
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+T ++ A+ E K L +G + + T + A R+TDH
Sbjct: 282 DQQT--------------SAAANAIATERKLLV-----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|326803667|ref|YP_004321485.1| peptide chain release factor 1 [Aerococcus urinae ACS-120-V-Col10a]
gi|326651316|gb|AEA01499.1| peptide chain release factor 1 [Aerococcus urinae ACS-120-V-Col10a]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 78/106 (73%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+HTST +V V+P+ +D++ +DEKD++ + RA+GAGGQHVN T SAV
Sbjct: 184 VQRVPKTESQGRVHTSTATVGVMPELEDLDFEIDEKDIRTDIYRASGAGGQHVNKTSSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
RMTHIPTGI V Q+ RSQ +NR A+ L+ +Y+ ++++ +
Sbjct: 244 RMTHIPTGIQVAMQDQRSQQQNREKAMLILRSRVYDYYQSQEQDEY 289
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++EKD++ + RA+GAGGQHVN T SA R+T
Sbjct: 216 IDEKDIRTDIYRASGAGGQHVNKTSSAVRMT 246
>gi|398854310|ref|ZP_10610880.1| peptide chain release factor 1 [Pseudomonas sp. GM80]
gi|398236402|gb|EJN22187.1| peptide chain release factor 1 [Pseudomonas sp. GM80]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 118/220 (53%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A W+ + +
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRARAMA-----------------WLSAKLNDQQTAAA 288
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+ S E+ L V +G + + T + A R+TDH
Sbjct: 289 ANAIAS----------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|34557214|ref|NP_907029.1| peptide chain release factor 1 [Wolinella succinogenes DSM 1740]
gi|46576699|sp|Q7M9M4.1|RF1_WOLSU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|34482930|emb|CAE09929.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Wolinella succinogenes]
Length = 355
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 106/195 (54%), Gaps = 44/195 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+EV+++ DLK++ R+ G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVNINPNDLKIDVFRSGGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGISV Q+++SQ KN+ AL LK +YE + E +L +AR +
Sbjct: 241 RITHLPTGISVSMQDEKSQHKNKDKALKILKARLYEAELE-------AKLSENSAARKL- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+ +G + + T + +R+TDHR
Sbjct: 293 -----------------------------------QVGSGDRSERIRTYNYPQNRLTDHR 317
Query: 180 IQRTVYNVAEFMSGG 194
I T+Y++ E M G
Sbjct: 318 IGLTLYSLEEIMLSG 332
>gi|330994789|ref|ZP_08318711.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1]
gi|329758050|gb|EGG74572.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1]
Length = 353
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PT I V QE++SQ KNRA A+ L+ +YE
Sbjct: 240 RITHLPTNIVVAMQEEKSQHKNRAKAMKILRARLYE 275
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 210 VEVNEGDLRIDVYRASGAGGQHVNKTESAVRIT 242
>gi|307719604|ref|YP_003875136.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
gi|306533329|gb|ADN02863.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192]
Length = 357
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 112/206 (54%), Gaps = 46/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+P++ EV + +D++V+ R++G GGQ VNTTDSAV
Sbjct: 185 VQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ KN+A AL L+ +YE++ + QE S R +
Sbjct: 245 RITHLPTGLVVTCQDEKSQHKNKAKALKILRARLYEMEKQRQE-----------SERAAM 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R++ +G + + T + +R+TDHR
Sbjct: 294 RRSQI--------------------------------GSGDRSERIRTYNFPQNRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIR 205
I T+Y + M G L E+I +R
Sbjct: 322 INLTLYKLEAVMDGD--LDEIIDALR 345
>gi|374290546|ref|YP_005037599.1| peptide chain release factor 1 [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377338|gb|AEU09526.1| peptide chain release factor 1 [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 375
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 44/195 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE GR+HTS ++VAVLP+ KDIE+ + D+K +T R++G+GGQHVN T+SAV
Sbjct: 199 VQRIPKTESQGRIHTSAITVAVLPEIKDIEMDIHLSDIKKDTFRSSGSGGQHVNKTESAV 258
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+P+ I+VE QE+RSQ KN A+ L+ +Y+ + E+Q
Sbjct: 259 RLTHLPSKITVECQEERSQHKNFEKAMNVLRSRLYQNEIEKQS----------------- 301
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
+E+ +K ++ +TG + T + R+TDHR
Sbjct: 302 --------------------------KERSIKRKSLVSTGDRSVKIRTYNYPKKRVTDHR 335
Query: 180 IQRTVYNVAEFMSGG 194
I ++++++ FM+G
Sbjct: 336 IHKSIHDLTGFMNGN 350
>gi|349700134|ref|ZP_08901763.1| peptide chain release factor 1 [Gluconacetobacter europaeus LMG
18494]
Length = 353
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PT I V QE++SQ KNRA A+ L+ +YE
Sbjct: 240 RITHLPTNIVVAMQEEKSQHKNRAKAMKILRARLYE 275
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 210 VEVNEGDLRIDVYRASGAGGQHVNKTESAVRIT 242
>gi|330502033|ref|YP_004378902.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
gi|328916319|gb|AEB57150.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 58/222 (26%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+P + + ++ DL+V+T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE QE+RSQ KNRA A+A L + ++Q++
Sbjct: 246 IRITHIPTGTVVECQEERSQHKNRAKAMAWLA-----AKLQDQQD--------------- 285
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
A H K++ K G+G + + T + R+T
Sbjct: 286 ----------------------AAAH---KEISETRKLLVGSGDRSERIRTYNFPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
DHRI T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 321 DHRINLTLYSLNEVIAGGVEAVIEPLLA-------EYQADQL 355
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 14/92 (15%)
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAV 144
N AKLK FE +R V+ V + ++ IH + + EP A+
Sbjct: 172 NVYAKLK-------FESGAHR--VQRVPETESQGRIHTSACTVAVLPEP-----DEQAAI 217
Query: 145 HLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ DL+V+T R++GAGGQHVNTTDSA RIT
Sbjct: 218 EINPADLRVDTYRSSGAGGQHVNTTDSAIRIT 249
>gi|399923811|ref|ZP_10781169.1| peptide chain release factor 1 [Peptoniphilus rhinitidis 1-13]
Length = 355
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 81/105 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+++ +D ++K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVDIEIDPTEIKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI + Q+++SQ++N+ A+ L+ +Y+++ +EQ +
Sbjct: 243 RLTHIPTGIVISCQDEKSQLRNKEKAMKLLRSKLYDLKLQEQNEK 287
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ ++K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 IEIDPTEIKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|33519808|ref|NP_878640.1| peptide chain release factor 1 [Candidatus Blochmannia floridanus]
gi|81666793|sp|Q7VR74.1|RF1_BLOFL RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|33504153|emb|CAD83415.1| peptide chain release factor 1 (RF-1) [Candidatus Blochmannia
floridanus]
Length = 358
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/104 (52%), Positives = 81/104 (77%), Gaps = 1/104 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQR+P TE GR+HTST ++AV+P P I ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 182 VQRIPNTESQGRIHTSTCTIAVIPNIPNAILPEINSNDLRIDTFRSSGAGGQHVNTTDSA 241
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+R+THIP+G+SVE Q++RSQ KN++ AL+ LK +Y I ++++
Sbjct: 242 IRITHIPSGLSVECQDERSQHKNKSKALSVLKSRLYAINIKQKQ 285
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Query: 133 PCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
P LP + DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 208 PNAILPE------INSNDLRIDTFRSSGAGGQHVNTTDSAIRIT 245
>gi|312869581|ref|ZP_07729732.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
gi|311094867|gb|EFQ53160.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3]
Length = 362
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/96 (57%), Positives = 76/96 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D++V +D KD++V+ R++GAGGQHVN T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTH+PTGI V Q++RSQ +NRA A+ LK +Y+
Sbjct: 248 RMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYD 283
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KD++V+ R++GAGGQHVN T SA R+T
Sbjct: 218 VDIDPKDIRVDVYRSSGAGGQHVNKTSSAVRMT 250
>gi|317052432|ref|YP_004113548.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
gi|316947516|gb|ADU66992.1| peptide chain release factor 1 [Desulfurispirillum indicum S5]
Length = 355
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS V+VAVLP+ +++++ ++ DL+++ R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPQTESSGRIHTSAVTVAVLPEAEEVDIDINPADLRIDVYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLI 94
R+THIPTG+SV QE RSQ KN+ AL+ L+ RL+
Sbjct: 243 RVTHIPTGVSVACQEGRSQHKNKEKALSILRSRLL 277
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 24/27 (88%)
Query: 150 DLKVETKRATGAGGQHVNTTDSADRIT 176
DL+++ R++GAGGQHVNTTDSA R+T
Sbjct: 219 DLRIDVYRSSGAGGQHVNTTDSAVRVT 245
>gi|419622595|ref|ZP_14155824.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23216]
gi|380599172|gb|EIB19549.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni
LMG 23216]
Length = 355
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 112/208 (53%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVIPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E RL + AR
Sbjct: 241 RITHVPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESE-------RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y + M G + E+I + H
Sbjct: 318 INLTLYRLDAIMQDG-LFDEIIEPLITH 344
>gi|456358592|dbj|BAM93037.1| peptide chain release factor 1 [Agromonas oligotrophica S58]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 112/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q ++ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------KVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L E+I
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGEMI 342
>gi|349686191|ref|ZP_08897333.1| peptide chain release factor 1 [Gluconacetobacter oboediens 174Bp2]
Length = 353
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 77/96 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ ++++V ++E DL+++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNETDLRIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PT I V QE++SQ KNRA A+ L+ +YE
Sbjct: 240 RITHLPTNIVVAMQEEKSQHKNRAKAMKILRARLYE 275
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 210 VEVNETDLRIDVYRASGAGGQHVNKTESAVRIT 242
>gi|323339960|ref|ZP_08080227.1| peptide chain release factor RF1 [Lactobacillus ruminis ATCC 25644]
gi|323092602|gb|EFZ35207.1| peptide chain release factor RF1 [Lactobacillus ruminis ATCC 25644]
Length = 362
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+E+ LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 188 VQRVPVTESAGRVHTSTATVVVMPEEEDVEIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI-----QFEEQENR 105
RMTH+PTGI V Q+ RSQ +NR A+ LK +Y+ Q E ENR
Sbjct: 248 RMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYKSQEQSEYDENR 297
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 218 IDLDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 250
>gi|398992801|ref|ZP_10695762.1| peptide chain release factor 1 [Pseudomonas sp. GM21]
gi|398136257|gb|EJM25349.1| peptide chain release factor 1 [Pseudomonas sp. GM21]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|225437801|ref|XP_002274067.1| PREDICTED: peptide chain release factor 1 [Vitis vinifera]
gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera]
Length = 392
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVA+LPQ +++V L +DL+++T R+ G+GGQH NTT+SAV
Sbjct: 209 VQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAV 268
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIP+G++V Q++RSQ N+A AL L +YEI+
Sbjct: 269 RITHIPSGMTVAIQDERSQHMNKAKALKVLCAKLYEIE 306
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQH NTT+SA RIT
Sbjct: 239 VQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIT 271
>gi|345877352|ref|ZP_08829103.1| UDP-glucose 6-dehydrogenase [endosymbiont of Riftia pachyptila
(vent Ph05)]
gi|344225663|gb|EGV52015.1| UDP-glucose 6-dehydrogenase [endosymbiont of Riftia pachyptila
(vent Ph05)]
Length = 359
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 45/196 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ I EV ++ DL+++T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSACTVAILPEADAIDEVEINSNDLRIDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI +E Q++RSQ KN+A A++ L SAR +
Sbjct: 244 VRITHLPTGIVIECQDERSQHKNKARAMSLL------------------------SARLL 279
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E+ SS A + + L+V +G + + T + +R+TDH
Sbjct: 280 SQAQEA------------QSSAQA---QNRKLQV----GSGDRSERIRTYNFPQNRLTDH 320
Query: 179 RIQRTVYNVAEFMSGG 194
R+ T+Y + E M+GG
Sbjct: 321 RVNLTLYKLDEIMAGG 336
>gi|88606704|ref|YP_505023.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
gi|119361507|sp|Q2GKS8.1|RF1_ANAPZ RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|88597767|gb|ABD43237.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ]
Length = 359
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VAVLP+ +++++ +DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 185 VQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI V Q+++SQ KN++ AL L+ +Y ++ +++E
Sbjct: 245 RITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRE 287
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++EKDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 215 LKIDEKDLRIDVYRSSGPGGQSVNTTDSAVRIT 247
>gi|119477466|ref|ZP_01617657.1| peptide chain release factor 1 [marine gamma proteobacterium
HTCC2143]
gi|119449392|gb|EAW30631.1| peptide chain release factor 1 [marine gamma proteobacterium
HTCC2143]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 52/219 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA++P+ + EV +++ DL+++T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSACTVAIMPEVDSVDEVEINKSDLRIDTFRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSART 118
+R+THIP+G+ VE Q++RSQ KN+A A++ L+ RL+ IQ ++Q+ + R R+
Sbjct: 246 IRITHIPSGLVVECQDERSQHKNKARAMSLLQSRLLTGIQDKQQQEQSDER-------RS 298
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITD 177
++ +G + + T + R+TD
Sbjct: 299 LV-------------------------------------GSGDRSERIRTYNYPQGRVTD 321
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
HRI T+Y +AE M G L ++I +R +++ DQL
Sbjct: 322 HRINLTLYKLAEVMEGA--LGDVIDPLRN---EYQADQL 355
>gi|150015294|ref|YP_001307548.1| peptide chain release factor 1 [Clostridium beijerinckii NCIMB
8052]
gi|189039964|sp|A6LQG2.1|RF1_CLOB8 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|149901759|gb|ABR32592.1| peptide chain release factor 1 [Clostridium beijerinckii NCIMB
8052]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 111/205 (54%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+ + +KD++++ RA+G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTESSGRIHTSTATVAVLPEVDDVEIEVADKDVRIDVFRASGNGGQCVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q+++SQ+KN+ A+ LK +YE Q E + A+ I
Sbjct: 244 RITHLPTGLVVSCQDEKSQLKNKEKAMKVLKSRLYE-QAE------------RERAQGIA 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDS-ADRITDHR 179
+S + TG + + T + RITDHR
Sbjct: 291 EDRKSQV------------------------------GTGDRSERIRTYNYPQGRITDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELIS 202
I T+Y + F+ G M++ LI+
Sbjct: 321 IGLTLYKLDTFLGGDIDEMINALIT 345
>gi|347525808|ref|YP_004832556.1| peptide chain release factor 1 [Lactobacillus ruminis ATCC 27782]
gi|417974453|ref|ZP_12615272.1| peptide chain release factor 1 [Lactobacillus ruminis ATCC 25644]
gi|345284767|gb|AEN78620.1| peptide chain release factor 1 [Lactobacillus ruminis ATCC 27782]
gi|346329183|gb|EGX97483.1| peptide chain release factor 1 [Lactobacillus ruminis ATCC 25644]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+E+ LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 186 VQRVPVTESAGRVHTSTATVVVMPEEEDVEIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI-----QFEEQENR 105
RMTH+PTGI V Q+ RSQ +NR A+ LK +Y+ Q E ENR
Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYKSQEQSEYDENR 295
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 216 IDLDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 248
>gi|269926759|ref|YP_003323382.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
gi|269790419|gb|ACZ42560.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC
BAA-798]
Length = 355
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 77/95 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +++EV +D +DL+++ R+TG GGQ VNTTDSAV
Sbjct: 182 VQRVPVTESQGRIHTSTATVAVLPEAEEVEVEIDPEDLRIDVFRSTGHGGQSVNTTDSAV 241
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+TH+PTG+ V Q+++SQ+KNRA A+A L+ +Y
Sbjct: 242 RITHLPTGLVVTCQDEKSQLKNRAKAMAVLRARLY 276
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 12/161 (7%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDR 77
+ +A+LP+ + DEKD+ VE + TG + D T E Q +
Sbjct: 94 LKIALLPKDPN-----DEKDVIVEIRAGTGGEEAALFAADLYRMYTRY-----AERQGWK 143
Query: 78 SQIKNRANALAK-LKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTT 136
+++ + + + A K +I+E++ +R R R + ++ I
Sbjct: 144 TEVLSTSESDAGGFKEIIFEVKGRGAYSRLKYESGVHRVQRVPVTESQGRIHTSTATVAV 203
Query: 137 LPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP + V ++ +DL+++ R+TG GGQ VNTTDSA RIT
Sbjct: 204 LPEAEEVEVEIDPEDLRIDVFRSTGHGGQSVNTTDSAVRIT 244
>gi|307244007|ref|ZP_07526126.1| peptide chain release factor 1 [Peptostreptococcus stomatis DSM
17678]
gi|306492531|gb|EFM64565.1| peptide chain release factor 1 [Peptostreptococcus stomatis DSM
17678]
Length = 354
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 50/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAVLP+ +D+E+ ++ +D++V+ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRIPTTESGGRIHTSTATVAVLPEVEDVEIDINPEDVRVDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG V Q+++SQ+KN+ A+ LK +Y+ EQ
Sbjct: 243 RLTHIPTGEVVSCQDEKSQLKNKEKAMKVLKARLYDKALAEQ------------------ 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+KD+ E K G G + + T + R++D
Sbjct: 285 ---------------------------QKDIAAERKSQVGTGDRSERIRTYNFPQGRVSD 317
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + F+ G L E+I
Sbjct: 318 HRINLTLYKLDSFIDGD--LDEMI 339
>gi|425065343|ref|ZP_18468463.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
gi|404384207|gb|EJZ80650.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida P1059]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A A++ L I + + E QE + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQ---AQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + LP P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|423689826|ref|ZP_17664346.1| peptide chain release factor 1 [Pseudomonas fluorescens SS101]
gi|388002153|gb|EIK63482.1| peptide chain release factor 1 [Pseudomonas fluorescens SS101]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|383310198|ref|YP_005363008.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871470|gb|AFF23837.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. HN06]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A A++ L I + + E QE + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQ---AQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + LP P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|451344482|ref|ZP_21913539.1| peptide chain release factor 1 [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449336760|gb|EMD15931.1| peptide chain release factor 1 [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 79/105 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR+ TST +V V+P+ +++++ +D KDL+++T R++GAGGQH+N TDSAV
Sbjct: 185 VQRVPKTESQGRVQTSTATVLVMPEAEEVDIQIDPKDLRIDTYRSSGAGGQHINKTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI SQ+ RSQ NR A+ L+ IY+ +EQE +
Sbjct: 245 RITHIPTGIVATSQDGRSQHDNRDKAMQSLRARIYKHFLDEQEEK 289
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ KDL+++T R++GAGGQH+N TDSA RIT
Sbjct: 215 IQIDPKDLRIDTYRSSGAGGQHINKTDSAVRIT 247
>gi|237756512|ref|ZP_04585042.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691328|gb|EEP60406.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 44/194 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTSTV+VAVLP+ +++++ + ++L++ET RA GAGGQHVNTTDSAV
Sbjct: 187 VQRVPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELRIETMRAGGAGGQHVNTTDSAV 246
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q++RSQ++N+ A+ L+ RL +
Sbjct: 247 RITHIPTGMVVTCQDERSQLQNKMKAMQILR----------------ARL------KDYY 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
R E IA +E+ +V TG + + T + +R+TDHR
Sbjct: 285 ERLEKEKIA-----------------KERKEQV----GTGERSEKIRTYNFPQNRVTDHR 323
Query: 180 IQRTVYNVAEFMSG 193
+ T Y + + M G
Sbjct: 324 VNYTSYRINDIMDG 337
>gi|340029419|ref|ZP_08665482.1| peptide chain release factor 1 [Paracoccus sp. TRP]
Length = 352
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ + D++++T RA+GAGGQHVNTTDSAV
Sbjct: 179 VQRVPETESGGRIHTSAATVAVLPEAQEVDIEIPANDIRIDTMRASGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTGI V S E +SQ +NRANA+A L+ +Y+++
Sbjct: 239 RITHLPTGIVVTSSE-KSQHQNRANAMAVLRARLYDLE 275
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + D++++T RA+GAGGQHVNTTDSA RIT
Sbjct: 209 IEIPANDIRIDTMRASGAGGQHVNTTDSAVRIT 241
>gi|335996956|ref|ZP_08562873.1| peptide chain release factor 1 [Lactobacillus ruminis SPM0211]
gi|335352026|gb|EGM53517.1| peptide chain release factor 1 [Lactobacillus ruminis SPM0211]
Length = 351
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 79/110 (71%), Gaps = 5/110 (4%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE +GR+HTST +V V+P+ +D+E+ LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 177 VQRVPVTESAGRVHTSTATVVVMPEEEDVEIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 236
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI-----QFEEQENR 105
RMTH+PTGI V Q+ RSQ +NR A+ LK +Y+ Q E ENR
Sbjct: 237 RMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYKSQEQSEYDENR 286
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 207 IDLDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 239
>gi|312958850|ref|ZP_07773369.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6]
gi|311286620|gb|EFQ65182.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|15602420|ref|NP_245492.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|378774264|ref|YP_005176507.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|421263288|ref|ZP_15714345.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425063244|ref|ZP_18466369.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
gi|13431785|sp|P57852.1|RF1_PASMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|12720821|gb|AAK02639.1| PrfA [Pasteurella multocida subsp. multocida str. Pm70]
gi|356596812|gb|AET15538.1| peptide chain release factor 1 [Pasteurella multocida 36950]
gi|401689798|gb|EJS85175.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404382807|gb|EJZ79264.1| Peptide chain release factor 1 [Pasteurella multocida subsp.
gallicida X73]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A A++ L I + + E QE + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQ---AQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + LP P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|440739072|ref|ZP_20918594.1| peptide chain release factor 1 [Pseudomonas fluorescens BRIP34879]
gi|447915107|ref|YP_007395675.1| peptide chain release factor 1 [Pseudomonas poae RE*1-1-14]
gi|440380444|gb|ELQ17011.1| peptide chain release factor 1 [Pseudomonas fluorescens BRIP34879]
gi|445198970|gb|AGE24179.1| peptide chain release factor 1 [Pseudomonas poae RE*1-1-14]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQETIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|395242226|ref|ZP_10419225.1| Peptide chain release factor 1 [Lactobacillus pasteurii CRBIP
24.76]
gi|394480587|emb|CCI85465.1| Peptide chain release factor 1 [Lactobacillus pasteurii CRBIP
24.76]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 2/105 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTST +VAV+P+ + +++ LD KD++V+ RA+GAGGQH+N T SAV
Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIELDPKDIRVDVYRASGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
RMTH+PTGI V Q+ RSQ +NR A+ LK +Y+ F E +NR
Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYD--FYESQNR 288
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ RA+GAGGQH+N T SA R+T
Sbjct: 216 IELDPKDIRVDVYRASGAGGQHINKTSSAVRMT 248
>gi|388470749|ref|ZP_10144958.1| peptide chain release factor 1 [Pseudomonas synxantha BG33R]
gi|388007446|gb|EIK68712.1| peptide chain release factor 1 [Pseudomonas synxantha BG33R]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|386834324|ref|YP_006239639.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
gi|385201025|gb|AFI45880.1| peptide chain release factor 1 [Pasteurella multocida subsp.
multocida str. 3480]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ + E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A A++ L I + + E QE + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQ---AQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P + LP P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPESELPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|398904470|ref|ZP_10652313.1| peptide chain release factor 1 [Pseudomonas sp. GM50]
gi|398175849|gb|EJM63589.1| peptide chain release factor 1 [Pseudomonas sp. GM50]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|399002460|ref|ZP_10705146.1| peptide chain release factor 1 [Pseudomonas sp. GM18]
gi|398124900|gb|EJM14396.1| peptide chain release factor 1 [Pseudomonas sp. GM18]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|395650290|ref|ZP_10438140.1| peptide chain release factor 1 [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|352516337|ref|YP_004885654.1| peptide chain release factor 1 [Tetragenococcus halophilus NBRC
12172]
gi|348600444|dbj|BAK93490.1| peptide chain release factor 1 [Tetragenococcus halophilus NBRC
12172]
Length = 358
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 115/216 (53%), Gaps = 44/216 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +V V+P+ +++E+ +D+KD++ + A+GAGGQHVN T SAV
Sbjct: 184 VQRVPETESQGRVHTSTATVVVMPEAEEVELDIDDKDIRTDIYHASGAGGQHVNKTASAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q++RSQIKNR A+ L+ +Y+ +E +N + +RSA
Sbjct: 244 RLTHIPTGIVVAMQDERSQIKNREKAMKVLRARLYDKYEQEAQNEYD---ANRRSAIGSG 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P + R+TDHRI
Sbjct: 301 DRSE------RIRTYNFPQN---------------------------------RVTDHRI 321
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
TV + + + G L E+I + +D ++++L
Sbjct: 322 NLTVQQLDKILDGD--LEEIIEALILYDQTSKLEEL 355
>gi|339443178|ref|YP_004709183.1| hypothetical protein CXIVA_21140 [Clostridium sp. SY8519]
gi|338902579|dbj|BAK48081.1| hypothetical protein CXIVA_21140 [Clostridium sp. SY8519]
Length = 357
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 46/205 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST++VA++P+ +D++V L+ D K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTITVAIMPEAEDVDVELNMNDCKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI + Q+++SQ+KN+ AL L+ +Y+++ ++
Sbjct: 243 RLTHIPTGIVISCQDEKSQLKNKEKALKVLRAKLYDMELQK------------------- 283
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
H E D + ++ TG + + T + R+TDHR
Sbjct: 284 -----------------------AHDAEADAR-RSQIGTGDRSEKIRTYNFPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I+ T+Y + ++G L E+I ++
Sbjct: 320 IKLTLYKLDAILNGD--LQEIIDNL 342
>gi|229588283|ref|YP_002870402.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25]
gi|259585227|sp|C3KDC6.1|RF1_PSEFS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|229360149|emb|CAY47006.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|417861352|ref|ZP_12506407.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
gi|338821756|gb|EGP55725.1| peptide chain release factor 1 [Agrobacterium tumefaciens F2]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ +DI++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETEASGRIHTSAATVAVLPEAEDIDIEIRPEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTG+ V S E +SQ +NRA A+ L+ +Y+I+ ++ +N
Sbjct: 245 RITHLPTGLIVTSSE-KSQHQNRAKAMQVLRSRLYDIERQKVDN 287
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +D++++T RA+GAGGQHVNTTDSA RIT
Sbjct: 215 IEIRPEDIRIDTMRASGAGGQHVNTTDSAVRIT 247
>gi|429765265|ref|ZP_19297565.1| peptide chain release factor 1 [Clostridium celatum DSM 1785]
gi|429186715|gb|EKY27651.1| peptide chain release factor 1 [Clostridium celatum DSM 1785]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 76/96 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTST +VAVLP+ D+E+ +++KDL+++ R++G GGQ VNTTDSAV
Sbjct: 184 VQRVPDTESSGRIHTSTATVAVLPEVDDVEIEINDKDLRIDVYRSSGNGGQCVNTTDSAV 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTG V Q+++SQ+KN+ A+ L+ +YE
Sbjct: 244 RITHIPTGTVVACQDEKSQLKNKEKAMKVLRARLYE 279
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +KDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 214 IEINDKDLRIDVYRSSGNGGQCVNTTDSAVRIT 246
>gi|387891957|ref|YP_006322254.1| peptide chain release factor 1 [Pseudomonas fluorescens A506]
gi|387160126|gb|AFJ55325.1| peptide chain release factor 1 [Pseudomonas fluorescens A506]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|408411439|ref|ZP_11182598.1| Peptide chain release factor 1 [Lactobacillus sp. 66c]
gi|409351084|ref|ZP_11233931.1| Peptide chain release factor 1 [Lactobacillus equicursoris CIP
110162]
gi|407874448|emb|CCK84404.1| Peptide chain release factor 1 [Lactobacillus sp. 66c]
gi|407876984|emb|CCK85989.1| Peptide chain release factor 1 [Lactobacillus equicursoris CIP
110162]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 80/105 (76%), Gaps = 2/105 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE +GR+HTST +VAV+P+ + +++ LD KD++V+ R++GAGGQH+N T SAV
Sbjct: 186 VQRIPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
RMTH+PTGI V Q+ RSQ +NRA A+ LK +Y+ + E +NR
Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYD--YYESQNR 288
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L+ KD++V+ R++GAGGQH+N T SA R+T
Sbjct: 216 IDLDPKDIRVDVYRSSGAGGQHINKTSSAVRMT 248
>gi|395794825|ref|ZP_10474141.1| peptide chain release factor 1 [Pseudomonas sp. Ag1]
gi|421138189|ref|ZP_15598259.1| peptide chain release factor 1 [Pseudomonas fluorescens BBc6R8]
gi|395340986|gb|EJF72811.1| peptide chain release factor 1 [Pseudomonas sp. Ag1]
gi|404510612|gb|EKA24512.1| peptide chain release factor 1 [Pseudomonas fluorescens BBc6R8]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|345864857|ref|ZP_08817053.1| peptide chain release factor 1 [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345124094|gb|EGW53978.1| peptide chain release factor 1 [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 359
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 110/196 (56%), Gaps = 45/196 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VA+LP+ I EV ++ DL+++T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRIHTSACTVAILPEADAIDEVEINSNDLRIDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI +E Q++RSQ KN+A A++ L SAR +
Sbjct: 244 VRITHLPTGIVIECQDERSQHKNKARAMSLL------------------------SARLL 279
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E+ SS A + + L+V +G + + T + +R+TDH
Sbjct: 280 SQAQEA------------QSSAQA---QNRKLQV----GSGDRSERIRTYNFPQNRLTDH 320
Query: 179 RIQRTVYNVAEFMSGG 194
R+ T+Y + E M+GG
Sbjct: 321 RVNLTLYKLDEIMAGG 336
>gi|300025029|ref|YP_003757640.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
gi|299526850|gb|ADJ25319.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC
51888]
Length = 359
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 112/207 (54%), Gaps = 48/207 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +D+E+ + D++++T RA GAGGQHVN T+SAV
Sbjct: 185 VQRVPATEASGRIHTSAATVAVLPEAEDVEIDIKPDDIRIDTMRAGGAGGQHVNKTESAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V S E +SQ +NR A+ LK +YE++
Sbjct: 245 RITHLPTGIVVVSAE-KSQHQNRRLAMNVLKARVYELE---------------------- 281
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
RE T E D + +++ +G Q + T + R+TDHR
Sbjct: 282 ----------REKAAT----------ERSDAR-KSQVGSGDRSQRIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGG---AMLHELISD 203
I T+YN+ E M G A++ LI+D
Sbjct: 321 INLTLYNLDEVMVGNGLDALVDALITD 347
>gi|449124523|ref|ZP_21760842.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|449129526|ref|ZP_21765756.1| peptide chain release factor 1 [Treponema denticola SP37]
gi|448942854|gb|EMB23748.1| peptide chain release factor 1 [Treponema denticola OTK]
gi|448945574|gb|EMB26444.1| peptide chain release factor 1 [Treponema denticola SP37]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 113/202 (55%), Gaps = 46/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS V+VAVLP+ ++ E+ ++++DL+++ RA G GGQ VNTTDSAV
Sbjct: 183 VQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+A A+ L+ +Y+++ +K+ A
Sbjct: 243 RITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLE------------ESKKQAERAQ 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+R +++ +G + + T + +R+TDHR
Sbjct: 291 NR-------------------------------KSQVGSGDRSERIRTYNFPQNRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + M G L ELI
Sbjct: 320 INLTLYKLDSVMQGA--LDELI 339
>gi|82703754|ref|YP_413320.1| peptide chain release factor 1 [Nitrosospira multiformis ATCC
25196]
gi|119361568|sp|Q2Y5P3.1|RF1_NITMU RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|82411819|gb|ABB75928.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrosospira
multiformis ATCC 25196]
Length = 358
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 110/205 (53%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ +IE V L+ +L+++T RA+GAGGQH+N TDSA
Sbjct: 184 VQRVPATETQGRIHTSACTVAVMPEADEIEDVALNPAELRIDTFRASGAGGQHINKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI VE Q+ RSQ KN+A A++ L I + Q +EQ+++ T++S
Sbjct: 244 VRITHLPTGIVVECQDGRSQHKNKAQAMSVLAARIRDKQMQEQQSKQA---ATRKSLVGT 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
+R+ R P RITDHR
Sbjct: 301 GNRSG------RIRTYNFPQG---------------------------------RITDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T+Y + + M G L+EL S +
Sbjct: 322 INLTLYKIEQIMDGD--LNELCSAL 344
>gi|408374426|ref|ZP_11172113.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
gi|407765701|gb|EKF74151.1| peptide chain release factor 1 [Alcanivorax hongdengensis A-11-3]
Length = 361
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 114/213 (53%), Gaps = 55/213 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++ + +D+ ++ + +DL+++T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAIMAEAEDLGDIQIRNEDLRIDTYRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTG+ VE Q++RSQ KN+A A++ L +Y+ Q+N
Sbjct: 246 VRITHLPTGVVVECQDERSQHKNKAKAMSLLSARLYDA----QQN--------------- 286
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
A H E+ E K G+G + + T + R+T
Sbjct: 287 -----------------------AAHAEQ---AAERKSLVGSGDRSERIRTYNFPQGRVT 320
Query: 177 DHRIQRTVYNVAEFMSG------GAMLHELISD 203
DHRI T+Y + E M G GA+L E +D
Sbjct: 321 DHRINLTLYRLGEVMEGDLDEVLGALLAEYQAD 353
>gi|406933498|gb|EKD68136.1| hypothetical protein ACD_48C00064G0003 [uncultured bacterium]
Length = 353
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 76/96 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TEK GR+HTST SVAVLP+ ++ ++H+D D++V+T A G GGQ VNTT SAV
Sbjct: 183 VQRVPETEKQGRIHTSTASVAVLPEVEEKDIHVDPSDIRVDTYCAGGNGGQSVNTTYSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
RMTHIPTGI + Q+++SQIKNRA+A+ L IYE
Sbjct: 243 RMTHIPTGIVAQCQDEKSQIKNRASAMKVLLARIYE 278
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++ D++V+T A G GGQ VNTT SA R+T
Sbjct: 213 IHVDPSDIRVDTYCAGGNGGQSVNTTYSAVRMT 245
>gi|395500681|ref|ZP_10432260.1| peptide chain release factor 1 [Pseudomonas sp. PAMC 25886]
Length = 360
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+V+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
E+ L V +G + + T + A R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|456988494|gb|EMG23535.1| peptide chain release factor 1 [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 354
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 110/211 (52%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+ + EV ++E DL+++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRIPSTESGGRIHTSAVTVAVLPEADEEEVQINESDLRIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A AL L I E Q E+ K+ A I
Sbjct: 240 RITHIPTGVVVACQDEKSQHKNKAKALRILSARILEKQAED-----------KKQASDAI 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K+ G+G + V T + R TD
Sbjct: 289 K----------------------------------KQMIGSGDRSERVRTYNFPQGRCTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
HRI T +N++ M G L ELI + + D
Sbjct: 315 HRIGFTSHNLSAIMEGD--LDELIGALTEED 343
>gi|113461093|ref|YP_719161.1| peptide chain release factor 1 [Haemophilus somnus 129PT]
gi|119361547|sp|Q0I3B5.1|RF1_HAES1 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|112823136|gb|ABI25225.1| bacterial peptide chain release factor 1 (bRF-1) [Haemophilus
somnus 129PT]
Length = 360
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ P++ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A AL+ L I + EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALSVLASRIAQA---EQERQAQAQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P +P P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|24212814|ref|NP_710295.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai
str. 56601]
gi|45656013|ref|YP_000099.1| peptide chain release factor 1 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386072588|ref|YP_005986905.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai
str. IPAV]
gi|417763058|ref|ZP_12411041.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000624]
gi|417768005|ref|ZP_12415940.1| peptide chain release factor 1 [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|417774767|ref|ZP_12422631.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000621]
gi|417785305|ref|ZP_12433010.1| peptide chain release factor 1 [Leptospira interrogans str. C10069]
gi|418670088|ref|ZP_13231462.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418673976|ref|ZP_13235286.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000623]
gi|418689196|ref|ZP_13250318.1| peptide chain release factor 1 [Leptospira interrogans str.
FPW2026]
gi|418698413|ref|ZP_13259390.1| peptide chain release factor 1 [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418707611|ref|ZP_13268431.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418713401|ref|ZP_13274128.1| peptide chain release factor 1 [Leptospira interrogans str. UI
08452]
gi|418726958|ref|ZP_13285557.1| peptide chain release factor 1 [Leptospira interrogans str. UI
12621]
gi|418730829|ref|ZP_13289305.1| peptide chain release factor 1 [Leptospira interrogans str. UI
12758]
gi|421087495|ref|ZP_15548331.1| peptide chain release factor 1 [Leptospira santarosai str. HAI1594]
gi|421104399|ref|ZP_15564994.1| peptide chain release factor 1 [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421123244|ref|ZP_15583526.1| peptide chain release factor 1 [Leptospira interrogans str. Brem
329]
gi|421124604|ref|ZP_15584861.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421133771|ref|ZP_15593917.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|32171561|sp|Q8F9S6.1|RF1_LEPIN RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|59798055|sp|Q72W38.1|RF1_LEPIC RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|24193465|gb|AAN47313.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai
str. 56601]
gi|45599246|gb|AAS68736.1| peptide chain release factor 1 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353456377|gb|AER00922.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai
str. IPAV]
gi|400349450|gb|EJP01743.1| peptide chain release factor 1 [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400361341|gb|EJP17307.1| peptide chain release factor 1 [Leptospira interrogans str.
FPW2026]
gi|409941114|gb|EKN86748.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000624]
gi|409952094|gb|EKO06608.1| peptide chain release factor 1 [Leptospira interrogans str. C10069]
gi|409959705|gb|EKO23471.1| peptide chain release factor 1 [Leptospira interrogans str. UI
12621]
gi|410022216|gb|EKO88995.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410343988|gb|EKO95183.1| peptide chain release factor 1 [Leptospira interrogans str. Brem
329]
gi|410365851|gb|EKP21244.1| peptide chain release factor 1 [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410429744|gb|EKP74119.1| peptide chain release factor 1 [Leptospira santarosai str. HAI1594]
gi|410437735|gb|EKP86834.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410575609|gb|EKQ38627.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000621]
gi|410578959|gb|EKQ46810.1| peptide chain release factor 1 [Leptospira interrogans str.
2002000623]
gi|410754378|gb|EKR16033.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410762556|gb|EKR28717.1| peptide chain release factor 1 [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410772032|gb|EKR47226.1| peptide chain release factor 1 [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410774391|gb|EKR54399.1| peptide chain release factor 1 [Leptospira interrogans str. UI
12758]
gi|410790484|gb|EKR84178.1| peptide chain release factor 1 [Leptospira interrogans str. UI
08452]
gi|455790182|gb|EMF42072.1| peptide chain release factor 1 [Leptospira interrogans serovar Lora
str. TE 1992]
gi|456823585|gb|EMF72022.1| peptide chain release factor 1 [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 354
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 110/211 (52%), Gaps = 50/211 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+ + EV ++E DL+++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRIPSTESGGRIHTSAVTVAVLPEADEEEVQINESDLRIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A AL L I E Q E+ K+ A I
Sbjct: 240 RITHIPTGVVVACQDEKSQHKNKAKALRILSARILEKQAED-----------KKQASDAI 288
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K+ G+G + V T + R TD
Sbjct: 289 K----------------------------------KQMIGSGDRSERVRTYNFPQGRCTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
HRI T +N++ M G L ELI + + D
Sbjct: 315 HRIGFTSHNLSAIMEGD--LDELIGALTEED 343
>gi|357385917|ref|YP_004900641.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
gi|351594554|gb|AEQ52891.1| peptide chain release factor 1 [Pelagibacterium halotolerans B2]
Length = 358
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 108/196 (55%), Gaps = 43/196 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE SGR+HTS +VAVLP+ +DI++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPDTEASGRIHTSAATVAVLPEVEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V S E +SQ +NRANA+ L+ +++ E+Q R +++S
Sbjct: 243 RITHIPTGIVVTSAE-KSQHQNRANAMKVLRARLFD---EQQHKASSERAESRKSQVGSG 298
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 299 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 319
Query: 181 QRTVYNVAEFMSGGAM 196
T+Y + + ++G A+
Sbjct: 320 NLTLYKLPQIITGEAL 335
>gi|350563206|ref|ZP_08932028.1| peptide chain release factor 1 [Thioalkalimicrobium aerophilum AL3]
gi|349779070|gb|EGZ33417.1| peptide chain release factor 1 [Thioalkalimicrobium aerophilum AL3]
Length = 362
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 113/213 (53%), Gaps = 50/213 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ D+E V L+ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATETQGRVHTSAATVAIMPEAADVEQVELNPADLKVDTFRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIPTG VE Q++RSQ KNRA A++ L I + KR A
Sbjct: 246 IRITHIPTGTIVECQDERSQHKNRARAMSLLAARIMD---------------AKRQAHNQ 290
Query: 120 -IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITD 177
I +T ++ +G + + T + R+TD
Sbjct: 291 EIAQTRKSLV-----------------------------GSGDRSERIRTYNYPQGRVTD 321
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
HRI T+Y + + M+GG L ++I D H+YQ
Sbjct: 322 HRINLTLYKLDDVMNGG--LAQVI-DPLNHEYQ 351
>gi|146337703|ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
gi|146190509|emb|CAL74508.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS 278]
Length = 361
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D++V + + DL++ET RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEIEDVDVDIKQDDLRIETMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q+ RSQ KNRA+A+ L+ IY+ + + ++ RSA
Sbjct: 245 RITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQ--------KVDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L EL+
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELV 342
>gi|344345147|ref|ZP_08776003.1| Peptide chain release factor 1 [Marichromatium purpuratum 984]
gi|343803238|gb|EGV21148.1| Peptide chain release factor 1 [Marichromatium purpuratum 984]
Length = 360
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 110/196 (56%), Gaps = 45/196 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS +VAVLP+ + I+ + ++ DL+++T RA+GAGGQHVN TDSA
Sbjct: 184 VQRVPETESQGRVHTSACTVAVLPEVEAIDSIEINSADLRIDTYRASGAGGQHVNKTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ L+ RL+ + A
Sbjct: 244 IRITHLPSGIVVECQEERSQHKNRARAMSLLQ----------------ARLLAEAQASQT 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
++ES + L+V +G + + T + +R+TDH
Sbjct: 288 SEQSES-----------------------RRLQV----GSGDRSERIRTYNFPQNRVTDH 320
Query: 179 RIQRTVYNVAEFMSGG 194
RI T+Y + E M+G
Sbjct: 321 RINLTLYKLDEVMAGA 336
>gi|251771816|gb|EES52391.1| peptide chain release factor 1 [Leptospirillum ferrodiazotrophum]
Length = 362
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 116/212 (54%), Gaps = 52/212 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VA+LP+ ++EV +++KDL+++T ++GAGGQ VNTT SAV
Sbjct: 190 VQRVPVTEAGGRIHTSTVTVAILPEASEVEVDIEQKDLRIDTFCSSGAGGQSVNTTYSAV 249
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQENRWVVRLVTKRSARTI 119
R+THIP+GI V Q++RSQ+KNR A++ L+ RL+ EQE
Sbjct: 250 RITHIPSGIVVSCQDERSQLKNRTKAMSVLRSRLL------EQE---------------- 287
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRIT 176
V + +++ + K G+G + + T + +R+T
Sbjct: 288 ------------------------VSRQNQEIASQRKTLVGSGDRSERIRTYNFPQNRVT 323
Query: 177 DHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
DHRI T+Y + M G L L+ +R HD
Sbjct: 324 DHRIGLTLYQLDRVMEG--ELEPLVDALRAHD 353
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI-KNRA 84
PKD DE++L +E + GAGG+ + + ++ VE Q R+++ ++
Sbjct: 108 PKD---QRDERNLFIEIR--AGAGGEEAALFAAELGRMYLRF---VERQGFRAEVMESNE 159
Query: 85 NALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA- 143
+ K I +Q +R R R + I LP +
Sbjct: 160 TDIGGSKEFIIYVQGRNAFSRLKYESGVHRVQRVPVTEAGGRIHTSTVTVAILPEASEVE 219
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +E+KDL+++T ++GAGGQ VNTT SA RIT
Sbjct: 220 VDIEQKDLRIDTFCSSGAGGQSVNTTYSAVRIT 252
>gi|91974579|ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB5]
gi|119361592|sp|Q13F02.1|RF1_RHOPS RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|91681035|gb|ABE37337.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas
palustris BisB5]
Length = 361
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 111/204 (54%), Gaps = 49/204 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ ++++V + DLK++T RA GAGGQHVN T+SA+
Sbjct: 185 VQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKTESAI 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V Q+ RSQ KNRA+A+ L+ IY+ E+Q RL RSA
Sbjct: 245 RITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDA--EQQ------RLDAARSA---- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
E K G+G + + T + R+TD
Sbjct: 293 ---------------------------------ERKEKVGSGDRSERIRTYNFPQGRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELI 201
HRI T+Y + + ++G A L ELI
Sbjct: 320 HRINLTLYKLPQVIAGEA-LGELI 342
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 18 VSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTH---IPTGISVESQ 74
+ VA+LP+ +DE+++ +E + TG + D RM G SVE
Sbjct: 97 IRVALLPKDA-----MDERNVMLEIRAGTGGDEASLFAGD-LFRMYEKFAALQGWSVEV- 149
Query: 75 EDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPC 134
I ++ K +I E++ + R R T+ I
Sbjct: 150 -----ISASEGSMGGFKEIIAEVKGRGAFAKLKFESGVHRVQRVPDTETQGRIHTSAATV 204
Query: 135 TTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
LP V ++ DLK++T RA GAGGQHVN T+SA RIT
Sbjct: 205 AVLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKTESAIRIT 247
>gi|170717669|ref|YP_001784745.1| peptide chain release factor 1 [Haemophilus somnus 2336]
gi|189039976|sp|B0UUE6.1|RF1_HAES2 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|168825798|gb|ACA31169.1| peptide chain release factor 1 [Haemophilus somnus 2336]
Length = 360
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 117/217 (53%), Gaps = 48/217 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE GR+HTS +VAV+P+ P++ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPSDLRIDTYRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+THIPTGI VE Q++RSQ KN+A AL+ L I + EQE + + T+R+
Sbjct: 244 VRITHIPTGIVVECQDERSQHKNKAKALSVLASRIAQA---EQERQAQAQADTRRNLLGS 300
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
R++ I + P R+TDHR
Sbjct: 301 GDRSDK-IRTYNYP--------------------------------------QGRVTDHR 321
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I TVY + E M+G + ELI I +++ DQL
Sbjct: 322 INLTVYRLDEVMNG--KIDELIQPIIT---EYQADQL 353
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 9/82 (10%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVE 154
+++FE +R V+ V K ++ IH + + E P +P P+ DL+++
Sbjct: 174 QLKFESGGHR--VQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPS------DLRID 225
Query: 155 TKRATGAGGQHVNTTDSADRIT 176
T R++GAGGQHVNTTDSA RIT
Sbjct: 226 TYRSSGAGGQHVNTTDSAVRIT 247
>gi|242089427|ref|XP_002440546.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
gi|241945831|gb|EES18976.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor]
Length = 416
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTS VSVAVLPQ +++V L +DL+++T R+ G+GGQ VNTTDSAV
Sbjct: 242 VQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAV 301
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTG V Q++RSQ N+A AL L+ +YE++
Sbjct: 302 RITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELE 339
Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L +DL+++T R+ G+GGQ VNTTDSA RIT
Sbjct: 272 VQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRIT 304
>gi|121602027|ref|YP_988678.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|421760486|ref|ZP_16197303.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
gi|166223530|sp|A1URS5.1|RF1_BARBK RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|120614204|gb|ABM44805.1| peptide chain release factor 1 [Bartonella bacilliformis KC583]
gi|411175770|gb|EKS45795.1| peptide chain release factor 1 [Bartonella bacilliformis INS]
Length = 359
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 47/203 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ ++I++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA AL L+ +++I+ ++ E ++RSA
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARALQILRSRLFDIERQKAE--------SERSASR-- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+T+ +G + + T + R+TDHR
Sbjct: 294 ---------------------------------KTQVGSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSGGAMLHELIS 202
I T+Y + M G L ELI+
Sbjct: 321 INLTLYKLDRIMEGD--LDELIN 341
>gi|70732476|ref|YP_262238.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
gi|119361580|sp|Q4K695.1|RF1_PSEF5 RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|68346775|gb|AAY94381.1| peptide chain release factor 1 [Pseudomonas protegens Pf-5]
Length = 360
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+++T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+THIP+GI VE QE+RSQ KNRA A++ L + + Q T +A I
Sbjct: 246 IRITHIPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQ-------------TSAAANAI 292
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDH 178
E+ L V +G + + T + R+TDH
Sbjct: 293 AS--------------------------ERKLLV----GSGDRSERIRTYNFPQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
RI T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RINLTLYSLDEILAGGVEAVIEPLLA-------EYQADQL 355
>gi|319407578|emb|CBI81228.1| peptide chain release factor 1 [Bartonella sp. 1-1C]
Length = 359
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ ++I++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA AL L+ +++I+ ++ E ++RSA
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAE--------SERSASR-- 293
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+T+ +G + + T + R+TDHR
Sbjct: 294 ---------------------------------KTQVGSGDRSERIRTYNFPQGRVTDHR 320
Query: 180 IQRTVYNVAEFMSG--GAMLHELISD 203
I T+Y + M G +++ LISD
Sbjct: 321 INLTLYKLDRIMEGDLNELINALISD 346
>gi|282882091|ref|ZP_06290732.1| peptide chain release factor 1 [Peptoniphilus lacrimalis 315-B]
gi|281298121|gb|EFA90576.1| peptide chain release factor 1 [Peptoniphilus lacrimalis 315-B]
Length = 358
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 80/105 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+EV +D ++K + RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEVEIDPTEIKFDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI + Q+++SQ+ N+ A+ L+ +Y+++ +EQ +
Sbjct: 243 RLTHIPTGIVISCQDEKSQLMNKEKAMKLLRAKLYDLKIQEQNEK 287
Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ ++K + RA+G GGQ VNTTDSA R+T
Sbjct: 213 VEIDPTEIKFDVFRASGNGGQCVNTTDSAVRLT 245
>gi|83953606|ref|ZP_00962327.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1]
gi|83841551|gb|EAP80720.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1]
Length = 351
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 78/98 (79%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+++H+D DL+++T R++GAGGQHVNTTDSAV
Sbjct: 179 VQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDANDLRIDTMRSSGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTG+ V S E +SQ +NR A+ LK +Y+++
Sbjct: 239 RITHLPTGLVVTSSE-KSQHRNREIAMQVLKARLYDME 275
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++ DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 209 IHIDANDLRIDTMRSSGAGGQHVNTTDSAVRIT 241
>gi|119383645|ref|YP_914701.1| peptide chain release factor 1 [Paracoccus denitrificans PD1222]
gi|166223583|sp|A1B0G1.1|RF1_PARDP RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|119373412|gb|ABL69005.1| bacterial peptide chain release factor 1 (bRF-1) [Paracoccus
denitrificans PD1222]
Length = 351
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/98 (57%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ ++++V + D++++T RA+GAGGQHVNTTDSAV
Sbjct: 179 VQRVPETESGGRIHTSAATVAVLPEAEEVDVDIPAADIRIDTMRASGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+PTGI V S E +SQ +NRANA+A L+ +Y+++
Sbjct: 239 RITHLPTGIVVTSSE-KSQHQNRANAMAVLRARLYDME 275
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + D++++T RA+GAGGQHVNTTDSA RIT
Sbjct: 209 VDIPAADIRIDTMRASGAGGQHVNTTDSAVRIT 241
>gi|222823061|ref|YP_002574634.1| peptide chain release factor 1 [Campylobacter lari RM2100]
gi|254790870|sp|B9KE98.1|RF1_CAMLR RecName: Full=Peptide chain release factor 1; Short=RF-1
gi|222538282|gb|ACM63383.1| peptide chain release factor 1 [Campylobacter lari RM2100]
Length = 355
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 113/202 (55%), Gaps = 45/202 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E+ ++ DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRVHTSAITVAIMPEVDDVEIQINPNDLKIDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V +Q+ +SQ KN+ +A+ LK ++E+Q EQE RL + AR
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLFEMQ--EQE-----RLAKESEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + +RI+DHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNFPQNRISDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
I T+Y + + GG + E++
Sbjct: 318 INLTLYRLDAILEGG-LFDEIV 338
>gi|417770340|ref|ZP_12418250.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pomona str. Pomona]
gi|418680803|ref|ZP_13242041.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|418705266|ref|ZP_13266131.1| peptide chain release factor 1 [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|421117419|ref|ZP_15577782.1| peptide chain release factor 1 [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|400327453|gb|EJO79704.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|409947894|gb|EKN97888.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pomona str. Pomona]
gi|410011130|gb|EKO69258.1| peptide chain release factor 1 [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410765117|gb|EKR35819.1| peptide chain release factor 1 [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|455670214|gb|EMF35241.1| peptide chain release factor 1 [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 354
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 78/102 (76%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VAVLP+ + EV ++E DL+++ R++GAGGQHVNTTDSAV
Sbjct: 180 VQRIPSTESGGRIHTSAVTVAVLPEADEEEVQINESDLRIDVYRSSGAGGQHVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTG+ V Q+++SQ KN+A AL L I E Q E++
Sbjct: 240 RITHIPTGVVVACQDEKSQHKNKAKALRILSARILEKQAEDK 281
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + E DL+++ R++GAGGQHVNTTDSA RIT
Sbjct: 210 VQINESDLRIDVYRSSGAGGQHVNTTDSAVRIT 242
>gi|265982882|ref|ZP_06095617.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306838261|ref|ZP_07471111.1| peptide chain release factor 1 [Brucella sp. NF 2653]
gi|264661474|gb|EEZ31735.1| peptide chain release factor 1 [Brucella sp. 83/13]
gi|306406664|gb|EFM62893.1| peptide chain release factor 1 [Brucella sp. NF 2653]
Length = 359
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DI++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA A+ L+ +Y+++ ++ E+ R +RS
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARAMQILRARLYDMERQKAESE---RSQARRSQVGSG 300
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R+TDHRI
Sbjct: 301 DRSE------RIRTYNFPQG---------------------------------RVTDHRI 321
Query: 181 QRTVYNVAEFMSG--GAMLHELISD 203
T+Y + M G +++ LISD
Sbjct: 322 NLTLYKLDRVMEGDLDELVNALISD 346
>gi|398866181|ref|ZP_10621681.1| peptide chain release factor 1 [Pseudomonas sp. GM78]
gi|398241518|gb|EJN27168.1| peptide chain release factor 1 [Pseudomonas sp. GM78]
Length = 360
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 54/220 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAVLP+P + E + ++ DL+++T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
+R+TH+P+GI VE QE+RSQ KNRA A++ W+ SA+
Sbjct: 246 IRITHLPSGIVVECQEERSQHKNRARAMS-----------------WL-------SAKLN 281
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDH 178
+T ++ A+ E K L +G + + T + A R+TDH
Sbjct: 282 DQQT--------------SAAANAIASERKLLV-----GSGDRSERIRTYNYAQGRVTDH 322
Query: 179 RIQRTVYNVAEFMSGG--AMLHELISDIRQHDYQFRIDQL 216
R+ T+Y++ E ++GG A++ L++ +++ DQL
Sbjct: 323 RVNLTLYSLDEILAGGVDAVIEPLLA-------EYQADQL 355
>gi|395792483|ref|ZP_10471910.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713144|ref|ZP_17687404.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423800|gb|EJF89989.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395432456|gb|EJF98442.1| peptide chain release factor 1 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 359
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 51/208 (24%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE SGR+HTS +VAVLP+ ++I++ + +D++++T RA+GAGGQHVNTTDSAV
Sbjct: 185 VQRIPETETSGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI V Q ++SQ +NRA AL L+ +++I+ ++ E ++RSA
Sbjct: 245 RITHIPTGIMV-VQAEKSQHQNRARALQILRARLFDIERQKAE--------SERSA---- 291
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
K G+G + + T + RITD
Sbjct: 292 ---------------------------------SRKNQVGSGDRSERIRTYNFPQGRITD 318
Query: 178 HRIQRTVYNVAEFMSGGA--MLHELISD 203
HRI T+Y + + G ++H LIS+
Sbjct: 319 HRINLTLYKLDRILEGDLEELIHALISN 346
>gi|254488030|ref|ZP_05101235.1| peptide chain release factor 1 [Roseobacter sp. GAI101]
gi|214044899|gb|EEB85537.1| peptide chain release factor 1 [Roseobacter sp. GAI101]
Length = 371
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/98 (58%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+++H+D DL+++T R++GAGGQHVNTTDSAV
Sbjct: 199 VQRVPSTESGGRIHTSAATVAVLPEAEDVDIHVDPNDLRIDTMRSSGAGGQHVNTTDSAV 258
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V S E +SQ +NR A+ LK +Y+ +
Sbjct: 259 RITHIPTGIVVTSSE-KSQHRNREIAMQVLKARLYDAE 295
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H++ DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 229 IHVDPNDLRIDTMRSSGAGGQHVNTTDSAVRIT 261
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,176,849,278
Number of Sequences: 23463169
Number of extensions: 119191009
Number of successful extensions: 337182
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8364
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 312574
Number of HSP's gapped (non-prelim): 21452
length of query: 218
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 81
effective length of database: 9,144,741,214
effective search space: 740724038334
effective search space used: 740724038334
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)