BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1690
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UGC7|RF1ML_HUMAN Peptide chain release factor 1-like, mitochondrial OS=Homo sapiens
GN=MTRF1L PE=1 SV=1
Length = 380
Score = 150 bits (380), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 129/214 (60%), Gaps = 49/214 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+ +++AR I
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK-------RQNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGG--QHVNTTD-SADRITD 177
G+ G + + T + +R+TD
Sbjct: 314 -------------------------------------QIGSKGRSEKIRTYNFPQNRVTD 336
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQH-DYQ 210
HRI +T++++ FM G +L EL+ ++++ DY+
Sbjct: 337 HRINKTLHDLETFMQGDYLLDELVQSLKEYADYE 370
>sp|Q4V7E5|RF1ML_RAT Peptide chain release factor 1-like, mitochondrial OS=Rattus
norvegicus GN=Mtrf1l PE=2 SV=1
Length = 373
Score = 150 bits (378), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 133/218 (61%), Gaps = 45/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y ++ EE+ + + SAR I
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRLEEETAK-------RYSARKI- 306
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + + T + +R+TDHR
Sbjct: 307 -------------------------------QVGTKGRS----EKIRTYNFPQNRVTDHR 331
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH-DYQFRIDQL 216
I ++++++ FM G +L +LI ++ + DY+ ++ +
Sbjct: 332 INKSLHDLESFMQGDCLLDDLIQSLKDYSDYESLVEMI 369
>sp|Q2KI15|RF1ML_BOVIN Peptide chain release factor 1-like, mitochondrial OS=Bos taurus
GN=MTRF1L PE=2 SV=1
Length = 380
Score = 149 bits (377), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 46/210 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++ + +AR I
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK-------RYNARKI- 313
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+ T + + T + +R+TDHR
Sbjct: 314 -----------------------------------QIGTKGRSEKIRTYNFPQNRVTDHR 338
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
I ++++++ FM G +L EL+ ++ DY
Sbjct: 339 INKSLHDLETFMQGEYLLDELVQSLK--DY 366
>sp|Q8BJU9|RF1ML_MOUSE Peptide chain release factor 1-like, mitochondrial OS=Mus musculus
GN=Mtrf1l PE=2 SV=1
Length = 373
Score = 147 bits (371), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 131/218 (60%), Gaps = 45/218 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y + EE+ + + +AR I
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEETAK-------RYNARKI- 306
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+V TK + + + T + +R+TDHR
Sbjct: 307 -------------------------------QVGTKGRS----EKIRTYNFPQNRVTDHR 331
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQ-HDYQFRIDQL 216
I ++++++ FM G +L ++I ++ DY+ ++ +
Sbjct: 332 INKSLHDLESFMQGDCLLDDMIQSLKDCSDYEALVEMI 369
>sp|B1GZI5|RF1_UNCTG Peptide chain release factor 1 OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=prfA PE=3 SV=1
Length = 356
Score = 138 bits (347), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 121/218 (55%), Gaps = 50/218 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTS +VAVLP+ ++++V + +DL+++T RA+GAGGQH+N TDSA+
Sbjct: 183 VQRVPETEASGRVHTSAATVAVLPEAEEVDVEIKMEDLRIDTYRASGAGGQHINKTDSAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V Q++RSQIKNRA A L+ IYE + E E R
Sbjct: 243 RITHLPTGLVVACQDERSQIKNRAKAFKVLRAKIYEQRILEHEMR--------------- 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
L E K+ G+G + + T + +RITD
Sbjct: 288 ------------------------------LSSERKQQIGSGDRSEKIRTYNFPQNRITD 317
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQ 215
HRI +VYN+ E M G L EL++ + + D + ++ +
Sbjct: 318 HRIGYSVYNITEVMDGN--LSELVNKLIKADIESKLKE 353
>sp|Q8R5W0|RF1_FUSNN Peptide chain release factor 1 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=prfA PE=3 SV=1
Length = 365
Score = 136 bits (342), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 47/206 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVPKTE SGR+HTST +VAVLP+ +DI EV +D KDLK++T R+ GAGGQHVN TDSA
Sbjct: 191 VQRVPKTEASGRIHTSTATVAVLPEVEDIQEVTVDPKDLKIDTYRSGGAGGQHVNMTDSA 250
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
VR+TH+PTGI V+ Q++RSQ+KNR A+ L +YE++ E+Q
Sbjct: 251 VRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQ----------------- 293
Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDH 178
R+E E+ L+V TG + + T + D RITDH
Sbjct: 294 --RSEVE--------------------SERRLQV----GTGDRAEKIRTYNFPDGRITDH 327
Query: 179 RIQRTVYNVAEFMSG--GAMLHELIS 202
RI+ TV+ + F+ G M+ LI+
Sbjct: 328 RIKLTVHQLEAFLDGDIDEMIDALIT 353
>sp|B0S2B6|RF1_FINM2 Peptide chain release factor 1 OS=Finegoldia magna (strain ATCC
29328) GN=prfA PE=3 SV=1
Length = 355
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 121/209 (57%), Gaps = 46/209 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLP+ +D++V +++KDL+++ RA+G GGQ VNTTDSAV
Sbjct: 183 VQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQIKN+ A+ LK +Y++ EE++N+ + AR
Sbjct: 243 RITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLYDL-MEEEKNK------DRADAR--- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ TG + + T + RITDHR
Sbjct: 293 ---------------------------------KSQVGTGDRSERIRTYNFPQGRITDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHD 208
I +T++ + F+ G + E+I D+ +D
Sbjct: 320 INKTIFQLQNFLDGD--IEEMIDDLTSYD 346
>sp|B9DMD1|RF1_STACT Peptide chain release factor 1 OS=Staphylococcus carnosus (strain
TM300) GN=prfA PE=3 SV=1
Length = 358
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+EV + + DLK+ET R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEVDIKDADLKIETYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTGI S E +SQI+NR AL LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGIIATSSE-KSQIQNREKALKVLKARVYDMKLQEEQEKY 287
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++ DLK+ET R++GAGGQHVNTTDSA RIT
Sbjct: 213 VDIKDADLKIETYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q1RJT5|RF1_RICBR Peptide chain release factor 1 OS=Rickettsia bellii (strain
RML369-C) GN=prfA PE=3 SV=1
Length = 357
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 81/96 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ L+EKDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE
Sbjct: 246 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE 281
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ LEEKDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 216 IKLEEKDLRIDTYRASGAGGQHVNTTDSAVRIT 248
>sp|A8GXI1|RF1_RICB8 Peptide chain release factor 1 OS=Rickettsia bellii (strain OSU
85-389) GN=prfA PE=3 SV=1
Length = 357
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 81/96 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ L+EKDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 186 VQRVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE
Sbjct: 246 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE 281
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ LEEKDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 216 IKLEEKDLRIDTYRASGAGGQHVNTTDSAVRIT 248
>sp|A8GNQ4|RF1_RICAH Peptide chain release factor 1 OS=Rickettsia akari (strain
Hartford) GN=prfA PE=3 SV=1
Length = 355
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 114/208 (54%), Gaps = 43/208 (20%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ N+ R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRNKEQERADSRRGQIGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHD 208
T+Y + E + G L E I + D
Sbjct: 321 NLTLYKIDEVVKNG-QLDEFIEALIAED 347
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|Q748B1|RF1_GEOSL Peptide chain release factor 1 OS=Geobacter sulfurreducens (strain
ATCC 51573 / DSM 12127 / PCA) GN=prfA PE=3 SV=1
Length = 355
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 114/214 (53%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DIEV ++ DLK++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAVLPEAEDIEVDINPADLKIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI VE Q++RSQIKNRA A+ LK I + +EQ R
Sbjct: 240 RITHIPTGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNAR--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------IAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M G + E++ +R H YQ
Sbjct: 315 HRIGLTLYRLDSLMEGD--IAEVVDALRTH-YQM 345
>sp|Q2N5U6|RF1_ERYLH Peptide chain release factor 1 OS=Erythrobacter litoralis (strain
HTCC2594) GN=prfA PE=3 SV=1
Length = 355
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 80/96 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+P +++V +D+KDLK++ RA+GAGGQHVNTTDSAV
Sbjct: 181 VQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDDKDLKIDIYRASGAGGQHVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI V+ Q++RSQ KN+A A+ L+ +Y+
Sbjct: 241 RITHLPTGIVVQQQDERSQHKNKAKAMQVLRTRLYD 276
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V +++KDLK++ RA+GAGGQHVNTTDSA RIT
Sbjct: 211 VQIDDKDLKIDIYRASGAGGQHVNTTDSAVRIT 243
>sp|A8GSC7|RF1_RICRS Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Sheila Smith) GN=prfA PE=3 SV=1
Length = 355
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ + R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRKKEQARADSRRGQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 HLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|B0BXT9|RF1_RICRO Peptide chain release factor 1 OS=Rickettsia rickettsii (strain
Iowa) GN=prfA PE=3 SV=1
Length = 355
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 114/206 (55%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGI+V Q+++SQ KN+A AL L+ IYE EE+ + R ++R
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIYE---EERRKKEQARADSRRGQVGSG 299
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
R+E R P R++DHRI
Sbjct: 300 DRSE------RIRTYNFPQG---------------------------------RVSDHRI 320
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y + E + G + + LI+D
Sbjct: 321 HLTLYKIDEVVKNGQLDEFVEALIAD 346
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|A5CCS8|RF1_ORITB Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain
Boryong) GN=prfA PE=3 SV=1
Length = 359
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 118/205 (57%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE +GR+HTS +V VLP+ ++++V +D KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A A+ L +Y++ E+Q+++
Sbjct: 243 RITHIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDL--EKQKSK--------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+E+ + + + TG + + T + R+TDHR
Sbjct: 286 --------------------------QEQAISRKVQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T+Y + E + G L E+I+++
Sbjct: 320 INLTLYKIEEIIQEGK-LDEIINNL 343
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL + ++FE +R V+ + K + IH + + ++ LP +
Sbjct: 161 ASALISGNGVFANLKFESGVHR--VQRIPKTESNGRIHTSAATVV-------VLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|B3CQD1|RF1_ORITI Peptide chain release factor 1 OS=Orientia tsutsugamushi (strain
Ikeda) GN=prfA PE=3 SV=1
Length = 359
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 118/205 (57%), Gaps = 45/205 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+PKTE +GR+HTS +V VLP+ ++++V +D KDLK++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTG+ V Q+++SQ KN+A A+ L +Y++ E+Q+++
Sbjct: 243 RITHIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDL--EKQKSQ--------------- 285
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSAD-RITDHR 179
+E+ + + + TG + + T + R+TDHR
Sbjct: 286 --------------------------QEQAMSRKVQVGTGDRSERIRTYNYPQGRVTDHR 319
Query: 180 IQRTVYNVAEFMSGGAMLHELISDI 204
I T+Y + E + G L E+I+++
Sbjct: 320 INLTLYKIEEIIQEGK-LDEIINNL 343
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+AL + ++FE +R V+ + K + IH + + ++ LP +
Sbjct: 161 ASALISGNGVFANLKFESGVHR--VQRIPKTESNGRIHTSAATVV-------VLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++ KDLK++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|B9L5Z9|RF1_NAUPA Peptide chain release factor 1 OS=Nautilia profundicola (strain
ATCC BAA-1463 / DSM 18972 / AmH) GN=prfA PE=3 SV=1
Length = 355
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 115/211 (54%), Gaps = 46/211 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TE GR+HTS V+VA++P+ D+++ LD KD+K+E RA GAGGQHVN T+SAV
Sbjct: 181 VQRIPATESQGRIHTSAVTVAIMPEVDDVDIELDPKDIKIEVMRAGGAGGQHVNKTESAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
RMTHIPTGI+V Q++RSQ +N+ A+ LK + FE+ EN RL AR
Sbjct: 241 RMTHIPTGITVSMQDERSQQRNKEKAMQILKARV----FEKLENE---RLAAIGEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+++ +G + + T + +RITDHR
Sbjct: 291 ---------------------------------KSQVGSGDRSERIRTYNYPQNRITDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
I T+Y + + MS G + E+I + H YQ
Sbjct: 318 IGLTLYRLEQIMSEG-LFDEIIDPLIAH-YQ 346
>sp|Q7VFA0|RF1_HELHP Peptide chain release factor 1 OS=Helicobacter hepaticus (strain
ATCC 51449 / 3B1) GN=prfA PE=3 SV=1
Length = 355
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 45/208 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VA++P+ D+E++++ DLK++ R+ G GGQ VNTTDSAV
Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEININPNDLKIDVFRSGGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+THIPTGISV Q+++SQ KN+ AL LK +YE + E Q + AR
Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQN-------AQNKEAR--- 290
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSA-DRITDHR 179
+T+ +G + + T + +R+TDHR
Sbjct: 291 ---------------------------------KTQVGSGDRSERIRTYNYPQNRLTDHR 317
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQH 207
I T+Y++ E M GG +L E I+ + H
Sbjct: 318 IGLTLYSLEEIMLGG-LLDEFINPLIAH 344
>sp|Q0BUJ8|RF1_GRABC Peptide chain release factor 1 OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=prfA PE=3 SV=1
Length = 352
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/98 (61%), Positives = 79/98 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTSTV+VAVLP+ +D++V +DE DL+++ RA+GAGGQHVN T+SAV
Sbjct: 179 VQRVPATESQGRIHTSTVTVAVLPEAEDVDVQVDEGDLRIDVYRASGAGGQHVNKTESAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+P+GI V QE++SQ KNRA A+ LK +YE Q
Sbjct: 239 RITHLPSGIVVAMQEEKSQHKNRAKAMKILKARLYEQQ 276
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V ++E DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 209 VQVDEGDLRIDVYRASGAGGQHVNKTESAVRIT 241
>sp|Q4L7Z9|RF1_STAHJ Peptide chain release factor 1 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=prfA PE=3 SV=1
Length = 358
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+TH+PTG+ S E +SQI+NR AL LK +Y+++ +E++ ++ +
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKALKVLKARLYDMKLQEEQQKYAAQ 290
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|B1M766|RF1_METRJ Peptide chain release factor 1 OS=Methylobacterium radiotolerans
(strain ATCC 27329 / DSM 1819 / JCM 2831) GN=prfA PE=3
SV=1
Length = 361
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 109/197 (55%), Gaps = 44/197 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +++++H+++ DLK++T RA GAGGQHVN T+SA+
Sbjct: 186 VQRVPDTETQGRIHTSAATVAVLPEAEEVDIHVNDADLKIDTMRAQGAGGQHVNKTESAI 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI V QE+RSQ KNRA A+A L+ +YE + K SAR
Sbjct: 246 RITHLPTGIVVFVQEERSQHKNRARAMALLRARLYEAERN-----------AKDSARA-- 292
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
D K + +G + + T + R+TDHR
Sbjct: 293 ----------------------------ADRKAQV--GSGDRSERIRTYNFPQGRVTDHR 322
Query: 180 IQRTVYNVAEFMSGGAM 196
I T+Y + E M+G A+
Sbjct: 323 INLTLYKLEEVMAGTAL 339
>sp|Q8CNI7|RF1_STAES Peptide chain release factor 1 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=prfA PE=3 SV=1
Length = 358
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q5HMA4|RF1_STAEQ Peptide chain release factor 1 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=prfA PE=3 SV=1
Length = 358
Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 85/107 (79%), Gaps = 1/107 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWV 107
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKLQEEQQKYA 288
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q30NW2|RF1_SULDN Peptide chain release factor 1 OS=Sulfurimonas denitrificans
(strain ATCC 33889 / DSM 1251) GN=prfA PE=3 SV=1
Length = 355
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 110/206 (53%), Gaps = 45/206 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS ++VAV+P+ D+E+ ++E DLK++ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPATESQGRVHTSAITVAVMPEVDDVEIQINENDLKIDVMRSSGCGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V +Q+ +SQ KN+ A+ LK +Y+++ +E + + RSA+
Sbjct: 241 RITHLPTGLVVTNQDQKSQHKNKEKAMKVLKARLYDLEMQEA----IAKDSANRSAQVGT 296
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI 180
I + P +R++DHRI
Sbjct: 297 GDRSGRIRTYNYP--------------------------------------QNRMSDHRI 318
Query: 181 QRTVYNVAEFMSGGAM---LHELISD 203
T+Y +AE M GG M + LI+D
Sbjct: 319 TLTLYRLAEIMQGGLMDEIIEPLIAD 344
>sp|Q822M2|RF1_CHLCV Peptide chain release factor 1 OS=Chlamydophila caviae (strain
GPIC) GN=prfA PE=3 SV=1
Length = 361
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 115/212 (54%), Gaps = 48/212 (22%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS ++VAVLP+P D EV +DEKDLK++T RA+GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+TH+PTG+ V Q++RSQ KN+A A+ LK I + + + ++ RSA+
Sbjct: 243 AVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRRQK----EASAMRSAQV 298
Query: 119 IIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITD 177
+G + + T + S +R+TD
Sbjct: 299 ---------------------------------------GSGDRSERIRTYNFSQNRVTD 319
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDY 209
HRI T+YN+ + M G L + S + H Y
Sbjct: 320 HRIGLTLYNLDKVMEGD--LDAITSALVSHAY 349
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPT--- 67
+L+ ++ V P P D DL V + G GG VRM H+
Sbjct: 90 KLYKVLENLLVPPDPDD--------DLNVIMELRAGTGGDEAALFVGDCVRMYHLYASTK 141
Query: 68 GISVE----SQEDRSQIKNRANAL--AKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
G E S+ D K + A +KRL+ Q+E +R V+ V + + +H
Sbjct: 142 GWKYEVLSASESDIGGYKEYVMGISGAAVKRLL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EP V ++EKDLK++T RA+GAGGQHVN TDSA RIT
Sbjct: 197 TSAITVAVLPEPA----EDDEEVFIDEKDLKIDTFRASGAGGQHVNVTDSAVRIT 247
>sp|Q39YQ1|RF1_GEOMG Peptide chain release factor 1 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=prfA PE=3 SV=1
Length = 355
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 114/214 (53%), Gaps = 51/214 (23%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DIE+ ++ DLK++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAVLPEAEDIEIDINPVDLKIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTGI VE Q++RSQIKNR+ A+ LK I + +EQ R
Sbjct: 240 RITHLPTGIVVECQDERSQIKNRSKAMKVLKSRILDGLQQEQNAR--------------- 284
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAG--GQHVNTTD-SADRITD 177
+ + K+ G+G + + T + R+TD
Sbjct: 285 ------------------------------IAADRKQQVGSGDRSERIRTYNFPQGRMTD 314
Query: 178 HRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQF 211
HRI T+Y + M G + E++ +R H YQ
Sbjct: 315 HRIGLTLYRLDALMEGD--IAEVVDSLRAH-YQM 345
>sp|Q9A9V5|RF1_CAUCR Peptide chain release factor 1 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=prfA PE=3 SV=2
Length = 356
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 118/217 (54%), Gaps = 46/217 (21%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTS +VAVLP+ +D+E+ + E DL+++T R++GAGGQHVN TDSAV
Sbjct: 180 VQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+TH+PTG+ V S E +SQ +NRA A+ LK +Y++Q E + SAR+
Sbjct: 240 RITHLPTGVVVTSSE-KSQHQNRARAMKNLKARLYDMQREALD-----------SARSEA 287
Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRITDHR 179
+++ +G + + T + R+TDHR
Sbjct: 288 RKSQV--------------------------------GSGDRSERIRTYNFPQGRVTDHR 315
Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
I T+YN+A M G A L ++I+ + D R+ L
Sbjct: 316 INLTLYNLARIMEGDA-LDDVINPLIAEDQAERLASL 351
>sp|Q2GE03|RF1_NEOSM Peptide chain release factor 1 OS=Neorickettsia sennetsu (strain
Miyayama) GN=prfA PE=3 SV=1
Length = 367
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/98 (59%), Positives = 82/98 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +VAVLP+P+D++V +++KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ KNRA A+ L+ +YEI+
Sbjct: 246 RITHIPTGIVVIQQDEKSQHKNRAKAMKVLRVRLYEIE 283
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +KDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 216 VKINDKDLRIDVYRSSGPGGQSVNTTDSAVRIT 248
>sp|B0UAV4|RF1_METS4 Peptide chain release factor 1 OS=Methylobacterium sp. (strain
4-46) GN=prfA PE=3 SV=1
Length = 359
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 58/96 (60%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++H++E DLK++T RA GAGGQHVN T+SA+
Sbjct: 184 VQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNKTESAI 243
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIP+GI V QE+RSQ KNRA A+A L+ +YE
Sbjct: 244 RITHIPSGIVVFVQEERSQHKNRARAMAVLRARLYE 279
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 27/33 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+H+ E DLK++T RA GAGGQHVN T+SA RIT
Sbjct: 214 IHVNEADLKIDTMRAQGAGGQHVNKTESAIRIT 246
>sp|Q49Z65|RF1_STAS1 Peptide chain release factor 1 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=prfA PE=3 SV=1
Length = 358
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 86/109 (78%), Gaps = 1/109 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVR 109
R+THIPTG+ S E +SQI+NR AL LK +++++ +E++ ++ +
Sbjct: 243 RITHIPTGVIATSSE-KSQIQNREKALKVLKARLFDMKLQEEQQKYAAQ 290
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEVRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|A8F1S1|RF1_RICM5 Peptide chain release factor 1 OS=Rickettsia massiliae (strain
Mtu5) GN=prfA PE=3 SV=1
Length = 361
Score = 127 bits (318), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIQIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|C3PNN0|RF1_RICAE Peptide chain release factor 1 OS=Rickettsia africae (strain ESF-5)
GN=prfA PE=3 SV=1
Length = 355
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|Q92HK9|RF1_RICCN Peptide chain release factor 1 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=prfA PE=3 SV=1
Length = 355
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|Q9PL16|RF1_CHLMU Peptide chain release factor 1 OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=prfA PE=3 SV=1
Length = 359
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 109/198 (55%), Gaps = 50/198 (25%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQP--KDIEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
VQRVP+TE GR+HTS V++AVLP+P D EV +DEKDL+++T R++GAGGQHVN TDS
Sbjct: 183 VQRVPETETQGRVHTSAVTIAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDS 242
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI--YEIQFEEQENRWVVRLVTKRSA 116
AVR+THIPTG+ V Q++RSQ KN+A A+ LK I E+Q EQE + RSA
Sbjct: 243 AVRITHIPTGVVVSCQDERSQHKNKAKAMRVLKARIRDAEVQKREQEASAM------RSA 296
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTD-SADRI 175
+ +G + + T + +R+
Sbjct: 297 QV---------------------------------------GSGDRSERIRTYNFPQNRV 317
Query: 176 TDHRIQRTVYNVAEFMSG 193
TDHRI T+YN+ M G
Sbjct: 318 TDHRIGLTLYNLDRVMQG 335
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 12 RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTHIPTGIS 70
RL ++ + P P D DL V + G GG VRM H+ I
Sbjct: 90 RLSKQLENLLIPPDPDD--------DLSVIMELRAGTGGDEAALFVGDCVRMYHLYASIK 141
Query: 71 -------VESQEDRSQIKNRANALA--KLKRLIYEIQFEEQENRWVVRLVTKRSARTIIH 121
S+ D K ++ +KR + Q+E +R V+ V + + +H
Sbjct: 142 GWQCEVLSASESDLGGYKEYIMGVSGTSVKRFL---QYEAGTHR--VQRVPETETQGRVH 196
Query: 122 RTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ I EP V ++EKDL+++T R++GAGGQHVN TDSA RIT
Sbjct: 197 TSAVTIAVLPEPA----EDDEEVFIDEKDLRIDTFRSSGAGGQHVNVTDSAVRIT 247
>sp|Q4ULG0|RF1_RICFE Peptide chain release factor 1 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=prfA PE=3 SV=1
Length = 355
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|C4K0C9|RF1_RICPU Peptide chain release factor 1 OS=Rickettsia peacockii (strain
Rustic) GN=prfA PE=3 SV=1
Length = 355
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/95 (60%), Positives = 80/95 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +++++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY 95
R+THIPTGI+V Q+++SQ KN+A AL L+ IY
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARIY 277
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 10/94 (10%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
A+A K K + +++FE +R V+ V + ++ IH + + + LP +
Sbjct: 161 ASASIKGKDVFSKLKFESGVHR--VQRVPETESQGRIHTSAATV-------AVLPEAEEV 211
Query: 144 -VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 212 DIKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|Q9ZD21|RF1_RICPR Peptide chain release factor 1 OS=Rickettsia prowazekii (strain
Madrid E) GN=prfA PE=3 SV=1
Length = 355
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 80/96 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P+TE GR+HTS +VAVLP+ + I++ +++KDL+++T RA+GAGGQHVNTTDSAV
Sbjct: 183 VQRIPETESQGRIHTSAATVAVLPEAEGIDIKIEDKDLRIDTYRASGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+THIPTGI+V Q+++SQ KN+A AL L+ +YE
Sbjct: 243 RITHIPTGITVALQDEKSQHKNKAKALKILRARLYE 278
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +E+KDL+++T RA+GAGGQHVNTTDSA RIT
Sbjct: 213 IKIEDKDLRIDTYRASGAGGQHVNTTDSAVRIT 245
>sp|Q6GEV7|RF1_STAAR Peptide chain release factor 1 OS=Staphylococcus aureus (strain
MRSA252) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q2YUN5|RF1_STAAB Peptide chain release factor 1 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|P66020|RF1_STAAW Peptide chain release factor 1 OS=Staphylococcus aureus (strain
MW2) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|A8YY83|RF1_STAAT Peptide chain release factor 1 OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q6G7J2|RF1_STAAS Peptide chain release factor 1 OS=Staphylococcus aureus (strain
MSSA476) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|P66019|RF1_STAAN Peptide chain release factor 1 OS=Staphylococcus aureus (strain
N315) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|P66018|RF1_STAAM Peptide chain release factor 1 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=prfA PE=1 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|A6QIW2|RF1_STAAE Peptide chain release factor 1 OS=Staphylococcus aureus (strain
Newman) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q5HE82|RF1_STAAC Peptide chain release factor 1 OS=Staphylococcus aureus (strain
COL) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|A5IUR3|RF1_STAA9 Peptide chain release factor 1 OS=Staphylococcus aureus (strain
JH9) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q2FWE0|RF1_STAA8 Peptide chain release factor 1 OS=Staphylococcus aureus (strain
NCTC 8325) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
>sp|Q2FF10|RF1_STAA3 Peptide chain release factor 1 OS=Staphylococcus aureus (strain
USA300) GN=prfA PE=3 SV=1
Length = 358
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +D+E+ + +DLK++T R++GAGGQHVNTTDSAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
R+TH+PTG+ S E +SQI+NR A+ LK +Y+++ +E++ ++
Sbjct: 243 RITHLPTGVIATSSE-KSQIQNREKAMKVLKARLYDMKVQEEQQKY 287
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK++T R++GAGGQHVNTTDSA RIT
Sbjct: 213 IEIRNEDLKIDTYRSSGAGGQHVNTTDSAVRIT 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,243,952
Number of Sequences: 539616
Number of extensions: 2907501
Number of successful extensions: 10648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7567
Number of HSP's gapped (non-prelim): 2597
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)