Query psy1690
Match_columns 218
No_of_seqs 208 out of 1593
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:35:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 100.0 8.5E-52 2.9E-56 379.0 17.4 173 1-217 180-352 (354)
2 1zbt_A RF-1, peptide chain rel 100.0 9.5E-52 3.3E-56 380.5 17.7 172 1-216 198-369 (371)
3 1rq0_A RF-1, peptide chain rel 100.0 8.5E-52 2.9E-56 377.5 15.7 173 1-217 161-333 (342)
4 2b3t_B RF-1, peptide chain rel 100.0 1.6E-51 5.4E-56 377.9 11.9 173 1-217 184-357 (360)
5 1gqe_A Release factor 2, RF2; 100.0 7.1E-48 2.4E-52 354.4 16.9 161 1-206 201-362 (365)
6 2ihr_1 Peptide chain release f 100.0 2.7E-47 9.2E-52 350.4 16.2 163 1-208 189-352 (365)
7 2rsm_A Probable peptide chain 100.0 8.9E-39 3E-43 252.2 8.9 98 1-101 13-111 (115)
8 1j26_A Immature colon carcinom 99.9 1E-27 3.6E-32 188.7 9.6 72 27-98 11-107 (112)
9 2jva_A Peptidyl-tRNA hydrolase 99.9 1.8E-27 6.3E-32 186.3 8.8 70 30-99 7-100 (108)
10 4dh9_Y YAEJ; ribosome, YAEJ, r 99.9 1.3E-25 4.5E-30 182.8 7.3 72 29-100 6-101 (140)
11 2rsm_A Probable peptide chain 99.9 3.8E-24 1.3E-28 168.8 7.1 83 126-209 22-109 (115)
12 1gqe_A Release factor 2, RF2; 99.9 1.1E-22 3.8E-27 187.1 5.5 94 123-216 209-307 (365)
13 2ihr_1 Peptide chain release f 99.9 2.1E-22 7.3E-27 185.2 5.6 92 125-216 199-295 (365)
14 1zbt_A RF-1, peptide chain rel 99.8 5.5E-22 1.9E-26 182.8 5.3 103 110-216 197-303 (371)
15 3d5a_X RF1, peptide chain rele 99.8 4.5E-22 1.6E-26 182.4 4.4 103 110-216 179-285 (354)
16 1rq0_A RF-1, peptide chain rel 99.8 6.2E-22 2.1E-26 180.8 4.8 102 111-216 161-266 (342)
17 2b3t_B RF-1, peptide chain rel 99.8 9.3E-22 3.2E-26 180.7 0.5 99 110-212 183-286 (360)
18 2jva_A Peptidyl-tRNA hydrolase 99.8 4.2E-20 1.4E-24 144.5 6.3 70 140-209 4-100 (108)
19 1j26_A Immature colon carcinom 99.8 2.4E-19 8.1E-24 141.1 6.7 66 143-208 14-107 (112)
20 4dh9_Y YAEJ; ribosome, YAEJ, r 99.7 1.7E-18 5.8E-23 140.9 5.4 70 139-208 3-99 (140)
21 2ctl_A Vigilin; K homology typ 47.0 15 0.0005 26.9 3.1 48 47-97 33-88 (97)
22 2ctk_A Vigilin; K homology typ 43.4 49 0.0017 24.3 5.6 49 47-100 33-88 (104)
23 2axy_A Poly(RC)-binding protei 40.7 12 0.00042 25.7 1.7 47 47-96 21-72 (73)
24 1vig_A Vigilin; RNA-binding pr 39.5 15 0.0005 25.2 2.0 43 47-93 21-69 (71)
25 2ctm_A Vigilin; K homology typ 38.0 23 0.00077 25.8 2.9 48 47-97 33-86 (95)
26 2ctf_A Vigilin; K homology typ 30.0 73 0.0025 23.4 4.6 47 47-97 43-93 (102)
27 2cte_A Vigilin; K homology typ 27.6 37 0.0013 24.3 2.5 47 47-97 33-85 (94)
28 1we8_A Tudor and KH domain con 24.3 80 0.0027 22.9 3.9 46 47-97 31-87 (104)
29 2ctj_A Vigilin; K homology typ 24.2 54 0.0018 23.8 2.9 45 47-96 33-85 (95)
30 3krm_A Insulin-like growth fac 23.7 28 0.00096 26.8 1.3 51 47-100 101-160 (163)
31 1ec6_A RNA-binding protein NOV 22.6 1E+02 0.0035 21.4 4.1 48 47-97 19-76 (87)
32 2p2r_A Poly(RC)-binding protei 21.3 44 0.0015 22.7 1.8 45 47-95 21-73 (76)
33 2opv_A KHSRP protein; KH domai 20.9 46 0.0016 23.2 1.9 43 47-94 30-83 (85)
34 2lfh_A DNA-binding protein inh 20.0 37 0.0013 24.0 1.2 26 70-95 16-41 (68)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=8.5e-52 Score=379.01 Aligned_cols=173 Identities=42% Similarity=0.616 Sum_probs=167.1
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCCCcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCHH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI 80 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ~ 80 (218)
|||||+||++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||+
T Consensus 180 vqRvp~~es~gR~hTS~asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~~RSQ~ 259 (354)
T 3d5a_X 180 VQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDSRSQI 259 (354)
T ss_dssp EEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECCSSCHH
T ss_pred EEecCCcCCCCcCccCceEEEEeccCcccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECCCCCHH
Confidence 69999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeecC
Q psy1690 81 KNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATG 160 (218)
Q Consensus 81 ~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rssG 160 (218)
+||+.||++|+++|+++..+++.++. ...|+.+++.++||+ +||+|
T Consensus 260 ~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~i~~g~rse---------------------------~IRtY---- 305 (354)
T 3d5a_X 260 KNREKALMILRSRLLEMKRAEEAERL---RKTRLAQIGTGERSE---------------------------KIRTY---- 305 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCGGGGSC---------------------------SSEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccccccC---------------------------CeeeE----
Confidence 99999999999999999999988888 889999999999999 99999
Q ss_pred CCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690 161 AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217 (218)
Q Consensus 161 pGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~~ 217 (218)
| ++.-||+|||||+++.+++.+|+|+ |+.||+.+...+..++++++-
T Consensus 306 ------n--f~q~rVtDhR~~~~~~~l~~vldG~--Ld~~I~a~l~~~~~~~l~~~~ 352 (354)
T 3d5a_X 306 ------N--FPQSRVTDHRIGFTTHDLEGVLSGH--LTPILEALKRADQERQLAALA 352 (354)
T ss_dssp ------E--TTTTEEEETTTTEEECCHHHHTTTC--CHHHHHHHHHHHHHHHHHHHS
T ss_pred ------E--CCCCeeeecccCceeCChHHhhCCc--hHHHHHHHHHHHHHHHHHhhh
Confidence 8 8889999999999999999999998 999999999999999998763
No 2
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=100.00 E-value=9.5e-52 Score=380.46 Aligned_cols=172 Identities=38% Similarity=0.579 Sum_probs=153.8
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCCCcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCHH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI 80 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ~ 80 (218)
|||||+||++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||+
T Consensus 198 vqRvp~tes~gR~hTS~asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~eRSQ~ 277 (371)
T 1zbt_A 198 VQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQEERTQQ 277 (371)
T ss_dssp EEECCTTCSSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECSSSSHH
T ss_pred EEeecCCCCCCcccccceEEEEeccccccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECCcCCHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeecC
Q psy1690 81 KNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATG 160 (218)
Q Consensus 81 ~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rssG 160 (218)
+||+.||++|+++|+++..+++.++. ...|+.+++.++||+ +||+|
T Consensus 278 ~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~ig~g~Rse---------------------------~IRtY---- 323 (371)
T 1zbt_A 278 KNRDKAMKIIRARVADHFAQIAQDEQ---DAERKSTVGTGDRSE---------------------------RIRTY---- 323 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CC----CCSCSCTTS---------------------------EEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccccccCC---------------------------CeeeE----
Confidence 99999999999999999999988888 889999999999999 99999
Q ss_pred CCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhh
Q psy1690 161 AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216 (218)
Q Consensus 161 pGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~ 216 (218)
| ++.-||+|||||+++.+++.+|+|+ |+.||+.+...+..++++++
T Consensus 324 ------n--f~q~rVtDhRtg~~~~~l~~VldGd--Ld~~I~a~l~~~~~~~l~~~ 369 (371)
T 1zbt_A 324 ------N--FPQNRVTDHRIGLTLQKLDSILSGK--LDEVIDALILYDQTQKLEEL 369 (371)
T ss_dssp ------E--TTTTEEEETTTTEEESCHHHHHTTC--CHHHHHHHHHHHHHHHHHHC
T ss_pred ------E--CCCCEeeecccCCeECChHHHhCCc--HHHHHHHHHHHHHHHHHHhh
Confidence 8 8889999999999999999999998 99999999999999999875
No 3
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=8.5e-52 Score=377.45 Aligned_cols=173 Identities=45% Similarity=0.694 Sum_probs=153.7
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCCCcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCHH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI 80 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ~ 80 (218)
|||||+|+++||+|||||+|+|+|+.+++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||+
T Consensus 161 vqRvp~~es~gR~hTS~asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~RSQ~ 240 (342)
T 1rq0_A 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNERSQY 240 (342)
T ss_dssp EEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEESSCHH
T ss_pred EEecCCcccCCCCcccceEEEEeccccccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCCCCHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeecC
Q psy1690 81 KNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATG 160 (218)
Q Consensus 81 ~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rssG 160 (218)
+||+.||++|+++|+++..+++.++. ...|+.+++.++||+ +||+|
T Consensus 241 ~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~i~~g~Rse---------------------------~IRtY---- 286 (342)
T 1rq0_A 241 QNKQTALRILRARLYQLQKEQKEREI---SQKRKSQIGTGERSE---------------------------KIRTY---- 286 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT---CC----------CCC---------------------------EEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccccccC---------------------------CeEEE----
Confidence 99999999999999999999988887 888999999999999 99999
Q ss_pred CCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690 161 AGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217 (218)
Q Consensus 161 pGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~~ 217 (218)
| ++.-||+|||||+++.+++.+|+|+ |+.||+.+...+..+++++++
T Consensus 287 ------n--f~~~rVtDhRt~~~~~~l~~vldGd--Ld~~I~a~l~~~~~~~l~~~~ 333 (342)
T 1rq0_A 287 ------N--FPQNRVTDHRINYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVL 333 (342)
T ss_dssp ------E--TTTTEEEETTTTEEESCHHHHHTTC--CHHHHHHHHHHHHTTTHHHHC
T ss_pred ------E--CCCCeeeecccCceeCCHHHHhCCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 8 7889999999999999999999998 999999999999999998875
No 4
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=1.6e-51 Score=377.94 Aligned_cols=173 Identities=45% Similarity=0.624 Sum_probs=152.1
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCCCcc-cccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ 79 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~~~~-~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ 79 (218)
|||||+||++||+|||||+|+|+|+.++++ +.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||
T Consensus 184 vqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q~~RSQ 263 (360)
T 2b3t_B 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQ 263 (360)
T ss_dssp EEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEEESSCH
T ss_pred EEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEEECCCCCH
Confidence 699999999999999999999999999888 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeec
Q psy1690 80 IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRAT 159 (218)
Q Consensus 80 ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rss 159 (218)
++||+.|+++|+++|+++..+++.++. ...|+.+++.++||+ +||+|
T Consensus 264 ~~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~i~~g~rse---------------------------~IRtY--- 310 (360)
T 2b3t_B 264 HKNKAKALSVLGARIHAAEMAKRQQAE---ASTRRNLLGSGDRSD---------------------------RNRTY--- 310 (360)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTSCC---------CCC-------CC---------------------------EEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcccccccC---------------------------CeeeE---
Confidence 999999999999999999888877777 788999999999999 99999
Q ss_pred CCCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHHHHHHHHhhh
Q psy1690 160 GAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217 (218)
Q Consensus 160 GpGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~~~~r~~~~~ 217 (218)
| ++.-||+|||||+++.+++.+|+|+ |+.||+.+...+..++++++.
T Consensus 311 -------n--f~~~rVtDhRt~~~~~~l~~vldG~--Ld~~I~a~l~~~~~~~l~~~~ 357 (360)
T 2b3t_B 311 -------N--FPQGRVTDHRINLTLYRLDEVMEGK--LDMLIEPIIQEHQADQLAALS 357 (360)
T ss_dssp -------E--TTTTEEEEGGGTEEESCHHHHHHTC--THHHHHHHHHHHHHHHCC---
T ss_pred -------E--CCCCeeeecccCcEECCHHHHhCCC--HHHHHHHHHHHHHHHHHHhhh
Confidence 8 8889999999999999999999998 999999999999999887653
No 5
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=100.00 E-value=7.1e-48 Score=354.38 Aligned_cols=161 Identities=34% Similarity=0.529 Sum_probs=148.9
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCC-CcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK-DIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ 79 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~-~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ 79 (218)
||||||||++||+|||||+|+|+|+.+ ++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||
T Consensus 201 vqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ 280 (365)
T 1gqe_A 201 LVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQ 280 (365)
T ss_dssp EEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCH
T ss_pred EEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCH
Confidence 699999999999999999999999986 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeec
Q psy1690 80 IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRAT 159 (218)
Q Consensus 80 ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rss 159 (218)
++||+.|+++|+++|++...+++.++. ...|+.+ ....||+ +||+|
T Consensus 281 ~~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~~-~~i~~G~---------------------------~IRtY--- 326 (365)
T 1gqe_A 281 HKNKDQAMKQMKAKLYEVEMQKKNAEK---QAMEDNK-SDIGWGS---------------------------QIRSY--- 326 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---TCCSTTC-CCCCSCS---------------------------EEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhh-cccCccC---------------------------CeEeE---
Confidence 999999999999999999999888777 6666533 3455777 99999
Q ss_pred CCCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHH
Q psy1690 160 GAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206 (218)
Q Consensus 160 GpGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~ 206 (218)
| +...||+|||||+++.+++.+|+|+ |+.||+.+..
T Consensus 327 -------~--f~~~rVkDhRt~~~~~~l~~vldGd--ld~~I~a~l~ 362 (365)
T 1gqe_A 327 -------V--LDDSRIKDLRTGVETRNTQAVLDGS--LDQFIEASLK 362 (365)
T ss_dssp -------E--GGGTEEEETTTCCEESCHHHHHTTC--CHHHHHHHHH
T ss_pred -------E--CCCCeeeccccCceECCHHHHhCCC--HHHHHHHHHH
Confidence 8 8888899999999999999999998 9999998764
No 6
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=100.00 E-value=2.7e-47 Score=350.43 Aligned_cols=163 Identities=35% Similarity=0.495 Sum_probs=149.2
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCC-CcccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPK-DIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ 79 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~-~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ 79 (218)
|||||||+++||+|||||+|+|+|+.+ ++++.|+++||+|+|+|||||||||||||+|+|+|+|+||||+|+|+++|||
T Consensus 189 vqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ 268 (365)
T 2ihr_1 189 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQ 268 (365)
T ss_dssp EEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCH
T ss_pred EEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCH
Confidence 699999999999999999999999986 4889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHhhhccccccccCCCccccccccceeccCCCCCccccCCCeEEEEEeec
Q psy1690 80 IKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRAT 159 (218)
Q Consensus 80 ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~v~~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~~~~i~~~d~~i~~~rss 159 (218)
++||+.||++|+++|++...+++.++. ...|.. .....||+ +||+|
T Consensus 269 ~~Nr~~A~~~L~~~L~~~~~~~~~~~~---~~~r~~-~~~i~~G~---------------------------~IRtY--- 314 (365)
T 2ihr_1 269 IKNKELALKILKARLYELERKKREEEL---KALRGE-VRPIEWGS---------------------------QIRSY--- 314 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---TTTTCC-SCCSCCCS---------------------------CSEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhh-hhccCccC---------------------------CeeeE---
Confidence 999999999999999999999888877 666622 23344666 89999
Q ss_pred CCCCCcccccCCceeeeeeccceeEechhhhhcchHHHHHHHHHHHHHH
Q psy1690 160 GAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208 (218)
Q Consensus 160 GpGgQ~vNk~~s~vrv~h~~tgi~v~~~~~~~n~~~al~~l~~~l~~~~ 208 (218)
| ++.-||+|||||+++.+++.+|+|+ |+.||+.+....
T Consensus 315 -------n--f~~~rVtDhRtg~~~~~l~~VldGd--ld~~I~a~l~~~ 352 (365)
T 2ihr_1 315 -------V--LDKNYVKDHRTGLMRHDPENVLDGD--LMDLIWAGLEWK 352 (365)
T ss_dssp -------E--GGGTEEEETTTCCEESCHHHHTTTC--CHHHHHHHHHHH
T ss_pred -------E--CCCccchhcccCceeCChHHHhCCc--HHHHHHHHHHHH
Confidence 8 8889999999999999999999998 999999987654
No 7
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=100.00 E-value=8.9e-39 Score=252.22 Aligned_cols=98 Identities=27% Similarity=0.348 Sum_probs=93.1
Q ss_pred CeecCCCCCCCceEEeeeEEEEeCCCCC-cccccCCCCeEEEeeecCCCCCccccccCcceEEEEcCCceEEEEcccCCH
Q psy1690 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQ 79 (218)
Q Consensus 1 v~rv~~~~~~~~~~ts~asV~V~P~~~~-~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~HlPtGi~v~~~~~RSQ 79 (218)
|||||+||+.| ||+|+|+|+|+.+. ..++|+++||+|+|+|||||||||||||+|||+|+|+||||+|+|+++|||
T Consensus 13 vqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ 89 (115)
T 2rsm_A 13 LQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSV 89 (115)
T ss_dssp CCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCH
T ss_pred EEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCH
Confidence 79999999999 99999999999875 468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy1690 80 IKNRANALAKLKRLIYEIQFEE 101 (218)
Q Consensus 80 ~~Nk~~A~~~L~~~L~~~~~~~ 101 (218)
++||+.||++|+++|++....+
T Consensus 90 ~~Nr~~A~~~L~~kL~e~~~~~ 111 (115)
T 2rsm_A 90 DQNRKIARKVLQEKVDVFYNSG 111 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 8
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.95 E-value=1e-27 Score=188.73 Aligned_cols=72 Identities=28% Similarity=0.467 Sum_probs=68.7
Q ss_pred CCcccccCCCCeEEEeeecCCCCCccccccCcceEEE-EcCCc------------------------eEEEEcccCCHHH
Q psy1690 27 KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMT-HIPTG------------------------ISVESQEDRSQIK 81 (218)
Q Consensus 27 ~~~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~-HlPtG------------------------i~v~~~~~RSQ~~ 81 (218)
+.+++.|+++||+++|+|||||||||||||+|||+|+ |+|+| |+|+|+++|||++
T Consensus 11 ~~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~ 90 (112)
T 1j26_A 11 KQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFR 90 (112)
T ss_dssp CSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHH
T ss_pred cceEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHH
Confidence 4678999999999999999999999999999999997 99997 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy1690 82 NRANALAKLKRLIYEIQ 98 (218)
Q Consensus 82 Nk~~A~~~L~~~L~~~~ 98 (218)
||++||++|+++|+++.
T Consensus 91 Nr~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 91 NLAECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999874
No 9
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.94 E-value=1.8e-27 Score=186.27 Aligned_cols=70 Identities=40% Similarity=0.646 Sum_probs=67.0
Q ss_pred ccccCCCCeEEEeeecCCCCCccccccCcceEEEE------cC-----------------Cc-eEEEEcccCCHHHHHHH
Q psy1690 30 EVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTH------IP-----------------TG-ISVESQEDRSQIKNRAN 85 (218)
Q Consensus 30 ~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~H------lP-----------------tG-i~v~~~~~RSQ~~Nk~~ 85 (218)
++.|+++||+|+|+|||||||||||||+|||+|+| || +| |+|+|+++|||++||++
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 57899999999999999999999999999999999 99 88 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1690 86 ALAKLKRLIYEIQF 99 (218)
Q Consensus 86 A~~~L~~~L~~~~~ 99 (218)
|+++|+++|+++..
T Consensus 87 Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 87 ALLRLSELIVNAAK 100 (108)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999998753
No 10
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.92 E-value=1.3e-25 Score=182.80 Aligned_cols=72 Identities=42% Similarity=0.601 Sum_probs=67.6
Q ss_pred cccccCCCCeEEEeeecCCCCCccccccCcceEEE------EcCC------------------ceEEEEcccCCHHHHHH
Q psy1690 29 IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMT------HIPT------------------GISVESQEDRSQIKNRA 84 (218)
Q Consensus 29 ~~~~I~~~dl~i~~~RsSGpGGQ~VNkt~saV~l~------HlPt------------------Gi~v~~~~~RSQ~~Nk~ 84 (218)
.++.|+++||+|+|+|||||||||||||+|+|+|+ |||+ ||+|+|+++|||++|++
T Consensus 6 ~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~ 85 (140)
T 4dh9_Y 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNRE 85 (140)
T ss_dssp SSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHH
T ss_pred CCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHH
Confidence 36889999999999999999999999999999999 6997 49999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1690 85 NALAKLKRLIYEIQFE 100 (218)
Q Consensus 85 ~A~~~L~~~L~~~~~~ 100 (218)
+|+++|.++|+++...
T Consensus 86 ~A~~rL~~~l~~a~~~ 101 (140)
T 4dh9_Y 86 AALARLVAMIKELTTE 101 (140)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999998653
No 11
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus}
Probab=99.90 E-value=3.8e-24 Score=168.79 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=75.1
Q ss_pred ccccccccceeccCCC--CCccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh---hhhcchHHHHHH
Q psy1690 126 PIIAFREPCTTLPSSC--PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA---EFMSGGAMLHEL 200 (218)
Q Consensus 126 ~v~~w~~~V~v~p~~~--~~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~---~~~n~~~al~~l 200 (218)
+.++| .+|+++|+.+ ..+.|+++||+|+|+||||||||||||++|+|||+|+||||.|.|++ ++.|++.||++|
T Consensus 22 ~gts~-~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~RSQ~~Nr~~A~~~L 100 (115)
T 2rsm_A 22 PGMAA-STVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVL 100 (115)
T ss_dssp CCCCC-CCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCSSCHHHHHHHHHHHH
T ss_pred Cccce-EEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCCCCHHHHHHHHHHHH
Confidence 33444 5899999997 36899999999999999999999999999999999999999999985 599999999999
Q ss_pred HHHHHHHHH
Q psy1690 201 ISDIRQHDY 209 (218)
Q Consensus 201 ~~~l~~~~~ 209 (218)
.++|+++..
T Consensus 101 ~~kL~e~~~ 109 (115)
T 2rsm_A 101 QEKVDVFYN 109 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 12
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=99.86 E-value=1.1e-22 Score=187.12 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=85.3
Q ss_pred CCCccccccccceeccCCC--CCccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh---hhhcchHHH
Q psy1690 123 TESPIIAFREPCTTLPSSC--PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA---EFMSGGAML 197 (218)
Q Consensus 123 se~~v~~w~~~V~v~p~~~--~~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~---~~~n~~~al 197 (218)
+...+-+|+++|+|+|+++ ..+.|+++||+|+|||||||||||||||+|+|||+|+||||.|.|++ ++.|++.||
T Consensus 209 s~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~HiPtgivv~~q~~RSQ~~Nr~~A~ 288 (365)
T 1gqe_A 209 SGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAM 288 (365)
T ss_dssp SSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEEEEEETTTCCEEEECSSSCHHHHHHHHH
T ss_pred CcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCccceEEEEECCCeEEEEECCCCCHHHHHHHHH
Confidence 3334568899999999996 47789999999999999999999999999999999999999999995 599999999
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy1690 198 HELISDIRQHDYQFRIDQL 216 (218)
Q Consensus 198 ~~l~~~l~~~~~~~r~~~~ 216 (218)
.+|.++|++.+.+++.++.
T Consensus 289 ~~L~~~L~~~~~~~~~~~~ 307 (365)
T 1gqe_A 289 KQMKAKLYEVEMQKKNAEK 307 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887764
No 13
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=99.85 E-value=2.1e-22 Score=185.22 Aligned_cols=92 Identities=26% Similarity=0.285 Sum_probs=84.9
Q ss_pred CccccccccceeccCCC--CCccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh---hhhcchHHHHH
Q psy1690 125 SPIIAFREPCTTLPSSC--PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA---EFMSGGAMLHE 199 (218)
Q Consensus 125 ~~v~~w~~~V~v~p~~~--~~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~---~~~n~~~al~~ 199 (218)
...-+|+++|+++|+++ ..+.|+++||+|+|||||||||||||||+|+|||+|+||||.|.|++ ++.|++.||.+
T Consensus 199 gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~h~Ptgivv~~q~~RSQ~~Nr~~A~~~ 278 (365)
T 2ihr_1 199 GRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTGITVTCQTTRSQIKNKELALKI 278 (365)
T ss_dssp CCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEEEETTTTEEEEECSSSCHHHHHHHHHHH
T ss_pred CCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecccceEEEEEEcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 35568999999999996 47789999999999999999999999999999999999999999994 69999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1690 200 LISDIRQHDYQFRIDQL 216 (218)
Q Consensus 200 l~~~l~~~~~~~r~~~~ 216 (218)
|.++|++.+.+++.++.
T Consensus 279 L~~~L~~~~~~~~~~~~ 295 (365)
T 2ihr_1 279 LKARLYELERKKREEEL 295 (365)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887764
No 14
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=99.84 E-value=5.5e-22 Score=182.79 Aligned_cols=103 Identities=21% Similarity=0.241 Sum_probs=78.9
Q ss_pred HHhhhccccccccCCCccccccccceeccCCCC-CccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh
Q psy1690 110 LVTKRSARTIIHRTESPIIAFREPCTTLPSSCP-AVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA 188 (218)
Q Consensus 110 ~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~-~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~ 188 (218)
+-.|-....+..|-. ++| ++|+|+|+++. .+.|+++||+|+|||||||||||||||+|+|||+|+||||.|.|++
T Consensus 197 RvqRvp~tes~gR~h---TS~-asV~V~Pe~~ev~i~I~~~dl~i~~~RssGpGGQ~VNkt~SaVrlthlPtGivV~~q~ 272 (371)
T 1zbt_A 197 RVQRVPVTESQGRVH---TST-ATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAVRIIHLPTNIKVEMQE 272 (371)
T ss_dssp EEEECCTTCSSCCCE---EEE-EEEEEEECCCGGGSCCCGGGEEEEEECC---------CCCCEEEEEETTTTEEEEECS
T ss_pred EEEeecCCCCCCccc---ccc-eEEEEeccccccccccCcCcEEEEEecCCCCCCCcccccceeEEEEECCCeEEEEECC
Confidence 334434444455555 455 69999999974 7889999999999999999999999999999999999999999985
Q ss_pred ---hhhcchHHHHHHHHHHHHHHHHHHHHhh
Q psy1690 189 ---EFMSGGAMLHELISDIRQHDYQFRIDQL 216 (218)
Q Consensus 189 ---~~~n~~~al~~l~~~l~~~~~~~r~~~~ 216 (218)
++.|++.||.+|.++|++.+.+++.+++
T Consensus 273 eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 303 (371)
T 1zbt_A 273 ERTQQKNRDKAMKIIRARVADHFAQIAQDEQ 303 (371)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999998877654
No 15
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=99.84 E-value=4.5e-22 Score=182.44 Aligned_cols=103 Identities=23% Similarity=0.259 Sum_probs=87.4
Q ss_pred HHhhhccccccccCCCccccccccceeccCCCC-CccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh
Q psy1690 110 LVTKRSARTIIHRTESPIIAFREPCTTLPSSCP-AVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA 188 (218)
Q Consensus 110 ~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~-~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~ 188 (218)
+-.|-....+..|-. ++| ++|+|+|+++. .+.|+++||+|+|||||||||||||||+|+|||+|+||||.|.|++
T Consensus 179 RvqRvp~~es~gR~h---TS~-asV~V~P~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~SaVrl~HlPtgivv~~q~ 254 (354)
T 3d5a_X 179 RVQRVPVTETQGRIH---TST-ATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQD 254 (354)
T ss_dssp EEEECCSSCSSCCCE---EEE-EEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCCEEEEEETTTTEEEEECC
T ss_pred EEEecCCcCCCCcCc---cCc-eEEEEeccCcccccccCccceEEEeecCCCCCCcccccccceEEEEEcCCeEEEEECC
Confidence 334433344445555 455 69999999974 7889999999999999999999999999999999999999999985
Q ss_pred ---hhhcchHHHHHHHHHHHHHHHHHHHHhh
Q psy1690 189 ---EFMSGGAMLHELISDIRQHDYQFRIDQL 216 (218)
Q Consensus 189 ---~~~n~~~al~~l~~~l~~~~~~~r~~~~ 216 (218)
++.|++.||.+|.++|++.+.+++.++.
T Consensus 255 ~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 285 (354)
T 3d5a_X 255 SRSQIKNREKALMILRSRLLEMKRAEEAERL 285 (354)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999988876653
No 16
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=99.84 E-value=6.2e-22 Score=180.79 Aligned_cols=102 Identities=26% Similarity=0.293 Sum_probs=83.0
Q ss_pred HhhhccccccccCCCccccccccceeccCCCC-CccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEechh-
Q psy1690 111 VTKRSARTIIHRTESPIIAFREPCTTLPSSCP-AVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVA- 188 (218)
Q Consensus 111 ~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~-~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~~- 188 (218)
-.|-....+..|-. ++| ++|+|||++++ .+.|+++||+|+|+|||||||||||||+|+|||+|+||||.|.|++
T Consensus 161 vqRvp~~es~gR~h---TS~-asV~V~Pe~~~~~i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPtGivv~~q~~ 236 (342)
T 1rq0_A 161 VQRVPVTESGGRIH---TST-ATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNE 236 (342)
T ss_dssp EEECCTTSCSCCCE---EEE-EEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTCCEEEEEES
T ss_pred EEecCCcccCCCCc---ccc-eEEEEeccccccccccChhHeEEEeecCCCCCCcccccccceEEEEECCCeEEEEECCC
Confidence 33333344444555 455 69999999974 7889999999999999999999999999999999999999999985
Q ss_pred --hhhcchHHHHHHHHHHHHHHHHHHHHhh
Q psy1690 189 --EFMSGGAMLHELISDIRQHDYQFRIDQL 216 (218)
Q Consensus 189 --~~~n~~~al~~l~~~l~~~~~~~r~~~~ 216 (218)
++.|++.||.+|.++|++...+++.++.
T Consensus 237 RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~ 266 (342)
T 1rq0_A 237 RSQYQNKQTALRILRARLYQLQKEQKEREI 266 (342)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999998876653
No 17
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=99.82 E-value=9.3e-22 Score=180.71 Aligned_cols=99 Identities=29% Similarity=0.298 Sum_probs=83.3
Q ss_pred HHhhhccccccccCCCccccccccceeccCCCC-C-ccccCCCeEEEEEeecCCCCCcccccCCceeeeeeccceeEech
Q psy1690 110 LVTKRSARTIIHRTESPIIAFREPCTTLPSSCP-A-VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNV 187 (218)
Q Consensus 110 ~~~rk~~~~~~~Rse~~v~~w~~~V~v~p~~~~-~-~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h~~tgi~v~~~ 187 (218)
+-.|-....+..|-. ++| ++|+|+|+++. . +.|+++||+|+|+|||||||||||||+|+|||+|+||||.|.|+
T Consensus 183 RvqRvp~~es~gR~h---TS~-asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl~hlPtGivv~~q 258 (360)
T 2b3t_B 183 RVQRVPATESQGRIH---TSA-CTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQ 258 (360)
T ss_dssp EEEECCTTCSSCCCE---EEE-EEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETTTCCEEEEE
T ss_pred EEEecCCCcccCcCC---ccc-eEEEEecCcccccccccChhheEEeeecCCCCCCCccccccceEEEEECCCeEEEEEC
Confidence 333434444445555 555 69999999975 4 78999999999999999999999999999999999999999998
Q ss_pred h---hhhcchHHHHHHHHHHHHHHHHHH
Q psy1690 188 A---EFMSGGAMLHELISDIRQHDYQFR 212 (218)
Q Consensus 188 ~---~~~n~~~al~~l~~~l~~~~~~~r 212 (218)
+ ++.|++.||.+|.++|++...+++
T Consensus 259 ~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~ 286 (360)
T 2b3t_B 259 DERSQHKNKAKALSVLGARIHAAEMAKR 286 (360)
T ss_dssp ESSCHHHHHHHHHHHHHHHHTTTTTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 599999999999999998776554
No 18
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=99.80 E-value=4.2e-20 Score=144.54 Aligned_cols=70 Identities=24% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCCCccccCCCeEEEEEeecCCCCCcccccCCceeeee------ec-----------------cc-eeEechh---hhhc
Q psy1690 140 SCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITD------HR-----------------IQ-RTVYNVA---EFMS 192 (218)
Q Consensus 140 ~~~~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~h------~~-----------------tg-i~v~~~~---~~~n 192 (218)
+...+.|+++||+++|+||||||||||||++|+|+++| +| +| |.+.|++ +..|
T Consensus 4 i~~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~N 83 (108)
T 2jva_A 4 ISNNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQN 83 (108)
T ss_dssp CSSSCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHH
T ss_pred cccccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHH
Confidence 34578999999999999999999999999999999999 88 88 8999985 6999
Q ss_pred chHHHHHHHHHHHHHHH
Q psy1690 193 GGAMLHELISDIRQHDY 209 (218)
Q Consensus 193 ~~~al~~l~~~l~~~~~ 209 (218)
+++||++|.++|++...
T Consensus 84 r~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 84 RADALLRLSELIVNAAK 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 99999999999988653
No 19
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=99.77 E-value=2.4e-19 Score=141.07 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=61.4
Q ss_pred CccccCCCeEEEEEeecCCCCCcccccCCceeee-eeccc------------------------eeEechh---hhhcch
Q psy1690 143 AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT-DHRIQ------------------------RTVYNVA---EFMSGG 194 (218)
Q Consensus 143 ~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~-h~~tg------------------------i~v~~~~---~~~n~~ 194 (218)
.+.|+++||+++|+||||||||||||++|+|+|+ |+|++ |.|.|++ +.+|++
T Consensus 14 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~ 93 (112)
T 1j26_A 14 SSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLA 93 (112)
T ss_dssp CCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHH
T ss_pred EEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHH
Confidence 5679999999999999999999999999999997 99998 9999985 599999
Q ss_pred HHHHHHHHHHHHHH
Q psy1690 195 AMLHELISDIRQHD 208 (218)
Q Consensus 195 ~al~~l~~~l~~~~ 208 (218)
+||++|.++|++..
T Consensus 94 ~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 94 ECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 20
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=99.73 E-value=1.7e-18 Score=140.88 Aligned_cols=70 Identities=26% Similarity=0.335 Sum_probs=63.8
Q ss_pred CCCCCccccCCCeEEEEEeecCCCCCcccccCCceeee------eecc------------------ceeEechh---hhh
Q psy1690 139 SSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT------DHRI------------------QRTVYNVA---EFM 191 (218)
Q Consensus 139 ~~~~~~~i~~~d~~i~~~rssGpGgQ~vNk~~s~vrv~------h~~t------------------gi~v~~~~---~~~ 191 (218)
.+.+.+.|+++||+|+|+|||||||||||||+|+|+|+ |+|+ +|.|.|++ +..
T Consensus 3 ~i~~~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~ 82 (140)
T 4dh9_Y 3 VISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQEL 82 (140)
T ss_dssp CCCSSSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHH
T ss_pred cccCCCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHH
Confidence 34568899999999999999999999999999999999 6898 59999985 699
Q ss_pred cchHHHHHHHHHHHHHH
Q psy1690 192 SGGAMLHELISDIRQHD 208 (218)
Q Consensus 192 n~~~al~~l~~~l~~~~ 208 (218)
|+++||++|.+.|++..
T Consensus 83 Nr~~A~~rL~~~l~~a~ 99 (140)
T 4dh9_Y 83 NREAALARLVAMIKELT 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999998865
No 21
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.01 E-value=15 Score=26.89 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=31.0
Q ss_pred CCCCccccc--cCcceEEEEcCCc------eEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTG------ISVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtG------i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
||||.++|+ .+|.|+|..-+.| -.|..... ..|-+.|.+++...+.+.
T Consensus 33 GkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~---~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 33 GRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY---EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC---HHHHHHHHHHHHHHHHHH
Confidence 899999995 4577887655555 12333332 247778888888776553
No 22
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.44 E-value=49 Score=24.34 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCCCccccc--cCcceEEEEcCCc----e-EEEEcccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTG----I-SVESQEDRSQIKNRANALAKLKRLIYEIQFE 100 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtG----i-~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~ 100 (218)
||||-++++ -+|.|+|..-+.| . .+... . .|-+.|.+++..++.+...+
T Consensus 33 G~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~----~-e~v~~A~~~I~~i~~e~e~~ 88 (104)
T 2ctk_A 33 GQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL----A-ANLDRAKAGLLERVKELQAE 88 (104)
T ss_dssp CSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC----H-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC----H-HHHHHHHHHHHHHHhhHHHh
Confidence 899999985 4577886654455 3 33332 2 57888999988888766543
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=40.68 E-value=12 Score=25.66 Aligned_cols=47 Identities=17% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCCCccccc--cCcceEEEEcCCce---EEEEcccCCHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTGI---SVESQEDRSQIKNRANALAKLKRLIYE 96 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtGi---~v~~~~~RSQ~~Nk~~A~~~L~~~L~~ 96 (218)
|+||.++++ .+|.++|.--+.|- +|..... ..+-..|++.+..+|.+
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~---~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 21 GKKGESVKKMREESGARINISEGNCPERIITLAGP---TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC---HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC---HHHHHHHHHHHHHHHhc
Confidence 899999984 46777876656551 2333322 34677888888887753
No 24
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=39.54 E-value=15 Score=25.16 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCCCccccc--cCcceEEEEcCCc----eEEEEcccCCHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTG----ISVESQEDRSQIKNRANALAKLKRL 93 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtG----i~v~~~~~RSQ~~Nk~~A~~~L~~~ 93 (218)
||||.++|+ -++.|+|..-++| .+.-. .. . .+-+.|.+++...
T Consensus 21 G~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~-G~-~--~~v~~A~~~I~~i 69 (71)
T 1vig_A 21 GKSGANINRIKDQYKVSVRIPPDSEKSNLIRIE-GD-P--QGVQQAKRELLEL 69 (71)
T ss_dssp CSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEE-ES-S--HHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHCCEEEECCCCCcccEEEEE-cC-H--HHHHHHHHHHHHH
Confidence 899999995 4678887766666 33322 22 1 3677777777653
No 25
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.03 E-value=23 Score=25.77 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCCccccc--cCcceEEEEcCCce----EEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTGI----SVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtGi----~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
||||.++++ -+|.|+|..-+.|- .|..... ..|-+.|.++|...+.+.
T Consensus 33 G~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~---~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 33 GARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL---PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp CSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC---HHHHHHHHHHHHHHHHHH
Confidence 889999885 45778876544550 2222222 257788888887776544
No 26
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.05 E-value=73 Score=23.36 Aligned_cols=47 Identities=13% Similarity=0.305 Sum_probs=29.9
Q ss_pred CCCCccccccC---cceEEEEcCCc-eEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNTTD---SAVRMTHIPTG-ISVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNkt~---saV~l~HlPtG-i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
|+||+++++-- ++|+| ++|.+ -.|..... ...-+.|...|..++.+.
T Consensus 43 G~~G~~Ik~i~~~~~~v~I-~fp~~~~~ItI~G~---~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 43 GKKGQNLAKITQQMPKVHI-EFTEGEDKITLEGP---TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp TTTTCHHHHHHHHCSSSEE-EECSSSCEEEEEEC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHcCCcEE-EeCCCCCEEEEECC---HHHHHHHHHHHHHHHHHH
Confidence 88999998643 36776 57732 23333332 356777888887777554
No 27
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.63 E-value=37 Score=24.35 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=28.4
Q ss_pred CCCCcccccc--CcceEEEEcC----CceEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNTT--DSAVRMTHIP----TGISVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNkt--~saV~l~HlP----tGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
||||.++++- +|.|+|..-+ +|.+.-.. . ..+-+.|.+++..++.+.
T Consensus 33 G~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G-~---~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 33 GKNGEKLQDLELKTATKIQIPRPDDPSNQIKITG-T---KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEE-C---HHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEE-C---HHHHHHHHHHHHHHhhcc
Confidence 8999999853 4566654322 45332222 2 357777888887776543
No 28
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=24.35 E-value=80 Score=22.87 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=28.4
Q ss_pred CCCCccccc--cCcceEEEEcC--------Cc-eEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIP--------TG-ISVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlP--------tG-i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
|+||.++++ -.|.++|.--+ ++ +.|....+ +-+.|++++.+++.+.
T Consensus 31 GkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~-----~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 31 GRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK-----EVAAAKHLILEKVSED 87 (104)
T ss_dssp TTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHH-----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHH-----HHHHHHHHHHHHHhhC
Confidence 889999884 34556654322 34 34444332 5688888888887653
No 29
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.24 E-value=54 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=27.2
Q ss_pred CCCCcccccc--Cc-ceEEEEcCCc-----eEEEEcccCCHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNTT--DS-AVRMTHIPTG-----ISVESQEDRSQIKNRANALAKLKRLIYE 96 (218)
Q Consensus 47 GpGGQ~VNkt--~s-aV~l~HlPtG-----i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~ 96 (218)
||||..+++- ++ .|.|..-.+| +.+.... .+-+.|.+++..++.+
T Consensus 33 G~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-----~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 33 GTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-----SDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-----HHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-----HHHHHHHHHHHHHHhh
Confidence 8999999864 35 6776543456 3333322 2666777777766543
No 30
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=23.72 E-value=28 Score=26.80 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCCccccc--cCcceEEEEcCCce-------EEEEcccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTGI-------SVESQEDRSQIKNRANALAKLKRLIYEIQFE 100 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtGi-------~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~~~~ 100 (218)
|+||.+++. ..|.++|..-+.+. .|....+ ..+-+.|...+..+|.+....
T Consensus 101 GkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~---~~~v~~A~~~I~~~i~~~~~~ 160 (163)
T 3krm_A 101 GKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGH---FYASQMAQRKIRDILAQVKQQ 160 (163)
T ss_dssp CGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEEC---HHHHHHHHHHHHHHHHHHTC-
T ss_pred cCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeC---HHHHHHHHHHHHHHHHHHHHh
Confidence 899999985 35778875433331 3333332 246788888888888766443
No 31
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=22.57 E-value=1e+02 Score=21.38 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCCccccc--cCcceEEEEcCC-----c---eEEEEcccCCHHHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPT-----G---ISVESQEDRSQIKNRANALAKLKRLIYEI 97 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPt-----G---i~v~~~~~RSQ~~Nk~~A~~~L~~~L~~~ 97 (218)
|+||.+++. -.|.++|.--+. | -.|....+ ..+-+.|...+.++|.+.
T Consensus 19 GkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~---~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 19 GKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS---PAATQAAQYLISQRVTYE 76 (87)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC---HHHHHHHHHHHHHHHhcc
Confidence 889999884 345666643321 2 23333333 347788888888887664
No 32
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=21.33 E-value=44 Score=22.68 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=26.5
Q ss_pred CCCCccccc--cCcceEEEEcC------CceEEEEcccCCHHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIP------TGISVESQEDRSQIKNRANALAKLKRLIY 95 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlP------tGi~v~~~~~RSQ~~Nk~~A~~~L~~~L~ 95 (218)
|+||.+++. -.|.++|.-.+ .+. |..... ..+-+.|...+.++|.
T Consensus 21 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~-v~I~G~---~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 21 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQ-VTITGS---AASISLAQYLINVRLS 73 (76)
T ss_dssp CGGGHHHHHHHHHHCCEEEECCCCTTCSEEE-EEEEEC---HHHHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHCCEEEEcCCCCCCCeEE-EEEEeC---HHHHHHHHHHHHHHHH
Confidence 889999884 34566665432 233 222222 3466778887777664
No 33
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=20.95 E-value=46 Score=23.20 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=25.2
Q ss_pred CCCCccccc--cCcceEEEEcCCc---------eEEEEcccCCHHHHHHHHHHHHHHHH
Q psy1690 47 GAGGQHVNT--TDSAVRMTHIPTG---------ISVESQEDRSQIKNRANALAKLKRLI 94 (218)
Q Consensus 47 GpGGQ~VNk--t~saV~l~HlPtG---------i~v~~~~~RSQ~~Nk~~A~~~L~~~L 94 (218)
|+||.+++. -.|.++|.-..+| +.+..+ + .+-+.|.+.+.+++
T Consensus 30 GkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~----~-~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 30 GKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD----P-YKVQQACEMVMDIL 83 (85)
T ss_dssp TTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEEC----H-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeC----H-HHHHHHHHHHHHHh
Confidence 788888773 4466666544444 444431 1 35666777776655
No 34
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.02 E-value=37 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.1
Q ss_pred EEEEcccCCHHHHHHHHHHHHHHHHH
Q psy1690 70 SVESQEDRSQIKNRANALAKLKRLIY 95 (218)
Q Consensus 70 ~v~~~~~RSQ~~Nk~~A~~~L~~~L~ 95 (218)
.-.++.||....+-..||+.|+..|=
T Consensus 16 ~~a~erER~Rm~~lN~aF~~LR~~VP 41 (68)
T 2lfh_A 16 GPAAEEPLSLLDDMNHCYSRLRELVP 41 (68)
T ss_dssp CCCBCCCSCSSSHHHHHHHHHHHHCC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHCC
Confidence 34568899999999999999999873
Done!