Your job contains 1 sequence.
>psy1690
VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV
RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII
HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRI
QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1690
(218 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NW58 - symbol:MTRF1L "Uncharacterized protein... 351 5.2e-41 2
UNIPROTKB|F1S7X5 - symbol:MTRF1L "Uncharacterized protein... 349 2.2e-40 2
MGI|MGI:1918830 - symbol:Mtrf1l "mitochondrial translatio... 347 4.6e-40 2
RGD|1598312 - symbol:Mtrf1l "mitochondrial translational ... 346 9.4e-40 2
UNIPROTKB|E2QTM1 - symbol:MTRF1L "Uncharacterized protein... 345 2.5e-39 2
UNIPROTKB|F6V8L3 - symbol:MTRF1L "Uncharacterized protein... 345 2.5e-39 2
UNIPROTKB|F1MCM1 - symbol:MTRF1L "Peptide chain release f... 352 4.0e-39 2
UNIPROTKB|Q2KI15 - symbol:MTRF1L "Peptide chain release f... 352 4.0e-39 2
ZFIN|ZDB-GENE-030131-8198 - symbol:mtrf1l "mitochondrial ... 343 8.3e-39 2
TIGR_CMR|GSU_3104 - symbol:GSU_3104 "peptide chain releas... 320 6.3e-35 2
FB|FBgn0032486 - symbol:CG5705 species:7227 "Drosophila m... 371 3.6e-34 1
TIGR_CMR|NSE_0406 - symbol:NSE_0406 "peptide chain releas... 316 6.2e-33 2
UNIPROTKB|O75570 - symbol:MTRF1 "Peptide chain release fa... 291 1.4e-32 2
MGI|MGI:2384815 - symbol:Mtrf1 "mitochondrial translation... 294 1.6e-32 2
UNIPROTKB|F1RJ87 - symbol:MTRF1 "Uncharacterized protein"... 295 1.9e-32 2
TIGR_CMR|APH_0420 - symbol:APH_0420 "peptide chain releas... 305 3.4e-32 2
UNIPROTKB|Q3MHI7 - symbol:MTRF1 "Peptide chain release fa... 288 3.6e-32 2
UNIPROTKB|E2RAT2 - symbol:MTRF1 "Uncharacterized protein"... 293 8.1e-32 2
TIGR_CMR|ECH_0597 - symbol:ECH_0597 "peptide chain releas... 296 8.8e-32 2
TIGR_CMR|CJE_1784 - symbol:CJE_1784 "peptide chain releas... 299 1.1e-31 2
UNIPROTKB|Q9UGC7 - symbol:MTRF1L "Peptide chain release f... 347 1.3e-31 1
UNIPROTKB|E1BXF8 - symbol:MTRF1 "Uncharacterized protein"... 286 1.8e-31 2
DICTYBASE|DDB_G0283175 - symbol:prfA "peptide chain relea... 312 2.3e-31 2
TIGR_CMR|SPO_2461 - symbol:SPO_2461 "peptide chain releas... 291 1.3e-30 2
TIGR_CMR|BA_5572 - symbol:BA_5572 "peptide chain release ... 290 1.6e-30 2
TIGR_CMR|CPS_3552 - symbol:CPS_3552 "peptide chain releas... 287 2.6e-30 2
UNIPROTKB|P0A7I0 - symbol:prfA "peptide chain release fac... 284 2.6e-30 2
UNIPROTKB|Q9KQ25 - symbol:prfA "Peptide chain release fac... 280 2.6e-30 2
TIGR_CMR|VC_2179 - symbol:VC_2179 "peptide chain release ... 280 2.6e-30 2
TIGR_CMR|CHY_2563 - symbol:CHY_2563 "peptide chain releas... 282 6.8e-30 2
UNIPROTKB|Q5TF45 - symbol:MTRF1L "Peptide chain release f... 330 7.9e-30 1
TAIR|locus:2041409 - symbol:AT2G47020 species:3702 "Arabi... 293 2.9e-29 2
TIGR_CMR|CBU_1965 - symbol:CBU_1965 "peptide chain releas... 274 5.9e-29 2
ZFIN|ZDB-GENE-050220-8 - symbol:zgc:113104 "zgc:113104" s... 259 1.2e-28 2
UNIPROTKB|B4DG01 - symbol:MTRF1 "Peptide chain release fa... 291 2.8e-28 2
TIGR_CMR|DET_1210 - symbol:DET_1210 "peptide chain releas... 258 5.2e-28 2
UNIPROTKB|P66016 - symbol:prfA "Peptide chain release fac... 266 3.6e-27 2
TAIR|locus:2099137 - symbol:APG3 "AT3G62910" species:3702... 263 6.5e-27 2
SGD|S000003111 - symbol:MRF1 "Mitochondrial translation r... 252 2.6e-26 2
TIGR_CMR|SO_3833 - symbol:SO_3833 "peptide chain release ... 282 9.7e-25 1
CGD|CAL0003702 - symbol:orf19.1303 species:5476 "Candida ... 241 3.6e-24 2
ASPGD|ASPL0000035902 - symbol:AN3462 species:162425 "Emer... 228 1.9e-23 2
TIGR_CMR|CJE_1628 - symbol:CJE_1628 "peptide chain releas... 265 6.1e-23 1
TIGR_CMR|GSU_2278 - symbol:GSU_2278 "peptide chain releas... 259 2.6e-22 1
TIGR_CMR|CHY_0163 - symbol:CHY_0163 "peptide chain releas... 250 2.4e-21 1
TIGR_CMR|APH_0479 - symbol:APH_0479 "peptide chain releas... 250 2.6e-21 1
TIGR_CMR|NSE_0604 - symbol:NSE_0604 "peptide chain releas... 245 8.0e-21 1
POMBASE|SPAC2F7.17 - symbol:SPAC2F7.17 "mitochondrial pep... 247 9.0e-21 1
DICTYBASE|DDB_G0288835 - symbol:prfB "class I peptide cha... 242 4.8e-20 1
UNIPROTKB|P07012 - symbol:prfB species:83333 "Escherichia... 237 7.3e-20 1
TIGR_CMR|ECH_0705 - symbol:ECH_0705 "peptide chain releas... 226 1.5e-18 1
TIGR_CMR|SPO_2585 - symbol:SPO_2585 "peptide chain releas... 221 6.3e-18 1
TAIR|locus:2010748 - symbol:AT1G56350 species:3702 "Arabi... 217 4.2e-17 1
WB|WBGene00020993 - symbol:W03F8.3 species:6239 "Caenorha... 208 2.2e-16 1
GENEDB_PFALCIPARUM|PF14_0265 - symbol:PF14_0265 "peptide ... 198 8.1e-16 1
UNIPROTKB|Q8ILH8 - symbol:PF14_0265 "Peptide chain releas... 198 8.1e-16 1
UNIPROTKB|P66026 - symbol:prfB "Peptide chain release fac... 191 1.4e-14 1
UNIPROTKB|Q74EJ1 - symbol:GSU0971 "Hydrolase, putative" s... 186 1.4e-14 1
TIGR_CMR|GSU_0971 - symbol:GSU_0971 "peptidyl-tRNA hydrol... 186 1.4e-14 1
TAIR|locus:2158936 - symbol:HCF109 "high chlorophyll fluo... 187 6.8e-14 1
UNIPROTKB|Q3Z8Y6 - symbol:prfB "Peptide chain release fac... 174 1.0e-12 1
TIGR_CMR|DET_0570 - symbol:DET_0570 "peptide chain releas... 174 1.0e-12 1
TAIR|locus:2006897 - symbol:AT1G33330 species:3702 "Arabi... 168 1.2e-12 1
GENEDB_PFALCIPARUM|MAL7P1.20 - symbol:MAL7P1.20 "peptide ... 155 8.2e-10 1
UNIPROTKB|Q8IC21 - symbol:MAL7P1.20 "Peptide chain releas... 155 8.2e-10 1
UNIPROTKB|Q74FR0 - symbol:GSU0546 "Peptidyl-tRNA hydrolas... 140 1.1e-09 1
TIGR_CMR|GSU_0546 - symbol:GSU_0546 "peptidyl-tRNA hydrol... 140 1.1e-09 1
CGD|CAL0005347 - symbol:orf19.5488 species:5476 "Candida ... 128 2.7e-08 1
POMBASE|SPBC1105.18c - symbol:SPBC1105.18c "peptide relea... 124 7.9e-08 1
SGD|S000004271 - symbol:YLR281C "Putative protein of unkn... 114 1.2e-06 1
UNIPROTKB|F1NSN8 - symbol:F1NSN8 "Uncharacterized protein... 107 7.3e-06 1
FB|FBgn0050100 - symbol:CG30100 species:7227 "Drosophila ... 104 8.1e-05 1
UNIPROTKB|F5H4X5 - symbol:C12orf65 "Probable peptide chai... 100 9.2e-05 1
UNIPROTKB|F1MLX1 - symbol:C17H12orf65 "Uncharacterized pr... 109 0.00011 1
WB|WBGene00011941 - symbol:T23B5.4 species:6239 "Caenorha... 104 0.00013 1
UNIPROTKB|P40711 - symbol:arfB "peptidyl-tRNA hydrolase, ... 76 0.00016 2
UNIPROTKB|F1RFL3 - symbol:C12orf65 "Uncharacterized prote... 104 0.00075 1
>UNIPROTKB|F1NW58 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 OMA:YSMKLEE
GeneTree:ENSGT00390000011879 EMBL:AADN02025387 EMBL:AADN02025388
IPI:IPI00593690 Ensembl:ENSGALT00000022140 Uniprot:F1NW58
Length = 367
Score = 351 (128.6 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 65/105 (61%), Positives = 88/105 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP ++E+ ++ KDL++ETKRA+GAGGQHVNTTDSAV
Sbjct: 188 VQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLRIETKRASGAGGQHVNTTDSAV 247
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ HIPTG++ E Q++RSQI+N+ A+ L +Y I+ EE EN+
Sbjct: 248 RIVHIPTGVTSECQQERSQIRNKEKAMQMLCAKLYNIKLEE-ENK 291
Score = 131 (51.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 78 SQIKNRANALAKLKRL-IYE-IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
S+I +A+A + L Y+ ++FE +R V+ V K + IH + + +P T
Sbjct: 158 SEIGGLRHAVASIAGLDAYKYMKFEGGVHR--VQRVPKTEKQGRIHTSTMTVAILPQP-T 214
Query: 136 TLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ + + KDL++ETKRA+GAGGQHVNTTDSA RI
Sbjct: 215 EME-----LKINPKDLRIETKRASGAGGQHVNTTDSAVRI 249
Score = 101 (40.6 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 144 VHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLH 198
+ LEE++ K + R G + + T + DRITDHRI R+V++ FM G ML
Sbjct: 284 IKLEEENKKRNSARKIQIGTKGRSEKIRTYNFPQDRITDHRISRSVHHTECFMLGEEMLD 343
Query: 199 ELISDIRQH-DYQ 210
E+I ++++ DY+
Sbjct: 344 EMIKTLKEYADYE 356
>UNIPROTKB|F1S7X5 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:GEAGGYK EMBL:CU633523 Ensembl:ENSSSCT00000004505 Uniprot:F1S7X5
Length = 380
Score = 349 (127.9 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 62/105 (59%), Positives = 87/105 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSLHLEEETSK 306
Score = 118 (46.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ KDL+++TKRA+GAGGQHVNTTDSA RI
Sbjct: 234 INPKDLRIDTKRASGAGGQHVNTTDSAVRI 263
Score = 97 (39.2 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
++HLEE+ K R G + + T + +R+TDHRI +++Y++ FM G +L
Sbjct: 297 SLHLEEETSKRYNARKVQVGTKGRSEKIRTYNFPQNRVTDHRINKSLYDLGTFMQGEYLL 356
Query: 198 HELISDIRQH-DYQ 210
EL+ ++ + +Y+
Sbjct: 357 DELVQSLKDYANYE 370
>MGI|MGI:1918830 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0006415 "translational termination"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 MGI:MGI:1918830 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 CTD:54516 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 HSSP:Q9X183
EMBL:AK036424 EMBL:AK078897 IPI:IPI00222491 RefSeq:NP_780583.1
UniGene:Mm.55082 ProteinModelPortal:Q8BJU9 SMR:Q8BJU9 STRING:Q8BJU9
PhosphoSite:Q8BJU9 PRIDE:Q8BJU9 Ensembl:ENSMUST00000019908
GeneID:108853 KEGG:mmu:108853 UCSC:uc007egi.1
GeneTree:ENSGT00390000011879 InParanoid:Q8BJU9 OMA:GEAGGYK
NextBio:361387 Bgee:Q8BJU9 Genevestigator:Q8BJU9 Uniprot:Q8BJU9
Length = 373
Score = 347 (127.2 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 63/102 (61%), Positives = 86/102 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y + EE+
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHLEEE 296
Score = 119 (46.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V K + IH + + +P T + + + KDL+++TK
Sbjct: 186 MKFEGGVHR--VQRVPKTEKQGRIHTSTMTVAILPQP-TEIK-----LVINPKDLRIDTK 237
Query: 157 RATGAGGQHVNTTDSADRI 175
RA+GAGGQHVNTTDSA RI
Sbjct: 238 RASGAGGQHVNTTDSAVRI 256
Score = 96 (38.9 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 21/80 (26%), Positives = 44/80 (55%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
++HLEE+ K R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 290 SMHLEEETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDCLL 349
Query: 198 HELISDIRQ-HDYQFRIDQL 216
++I ++ DY+ ++ +
Sbjct: 350 DDMIQSLKDCSDYEALVEMI 369
>RGD|1598312 [details] [associations]
symbol:Mtrf1l "mitochondrial translational release factor
1-like" species:10116 "Rattus norvegicus" [GO:0005739
"mitochondrion" evidence=IEA;ISO] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 RGD:1598312 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0
HSSP:Q9X183 GeneTree:ENSGT00390000011879 OMA:GEAGGYK EMBL:BC097970
IPI:IPI00365406 RefSeq:NP_001020894.1 UniGene:Rn.205194
ProteinModelPortal:Q4V7E5 STRING:Q4V7E5 PRIDE:Q4V7E5
Ensembl:ENSRNOT00000025398 GeneID:361473 KEGG:rno:361473
UCSC:RGD:1598312 InParanoid:Q4V7E5 NextBio:676427
Genevestigator:Q4V7E5 Uniprot:Q4V7E5
Length = 373
Score = 346 (126.9 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 64/112 (57%), Positives = 91/112 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE+ GR+HTST++VA+LPQP +I++ ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 195 VQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLRIDTKRASGAGGQHVNTTDSAV 254
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE-NRWVVRLV 111
R+ H+PTGI E Q++RSQ+KNR A+ KL+ +Y ++ EE+ R+ R +
Sbjct: 255 RIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRLEEETAKRYSARKI 306
Score = 119 (46.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V K + IH + + +P T + + + KDL+++TK
Sbjct: 186 MKFEGGVHR--VQRVPKTERQGRIHTSTMTVAILPQP-TEIK-----LVINPKDLRIDTK 237
Query: 157 RATGAGGQHVNTTDSADRI 175
RA+GAGGQHVNTTDSA RI
Sbjct: 238 RASGAGGQHVNTTDSAVRI 256
Score = 94 (38.1 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 21/80 (26%), Positives = 45/80 (56%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
++ LEE+ K + R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 290 SMRLEEETAKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDCLL 349
Query: 198 HELISDIRQH-DYQFRIDQL 216
+LI ++ + DY+ ++ +
Sbjct: 350 DDLIQSLKDYSDYESLVEMI 369
>UNIPROTKB|E2QTM1 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
Ensembl:ENSCAFT00000000841 Uniprot:E2QTM1
Length = 381
Score = 345 (126.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 62/105 (59%), Positives = 86/105 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL++ TKRA+GAGGQHVNTTDSAV
Sbjct: 203 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAV 262
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++
Sbjct: 263 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSK 307
Score = 119 (46.9 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 38/100 (38%), Positives = 56/100 (56%)
Query: 78 SQIKNRANALAKLKRL-IYE-IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
S+I +A A + L Y+ ++FE +R V+ V K + IH + + +P T
Sbjct: 173 SEIGGLRHASASIGGLEAYKHMKFEGGVHR--VQRVPKTEKQGRIHTSTMTVAILPQP-T 229
Query: 136 TLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ + + KDL++ TKRA+GAGGQHVNTTDSA RI
Sbjct: 230 EIN-----LVINPKDLRIHTKRASGAGGQHVNTTDSAVRI 264
Score = 91 (37.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
+++LEE+ K + R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 298 SMYLEEETSKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLL 357
Query: 198 HELISDIRQH-DYQFRID 214
EL+ ++ + DY+ ++
Sbjct: 358 DELVQSLKDYADYESLVE 375
>UNIPROTKB|F6V8L3 [details] [associations]
symbol:MTRF1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
GO:GO:0016149 GeneTree:ENSGT00390000011879
Ensembl:ENSCAFT00000000841 EMBL:AAEX03000279 OMA:DCTISIS
Uniprot:F6V8L3
Length = 238
Score = 345 (126.5 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 62/105 (59%), Positives = 86/105 (81%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL++ TKRA+GAGGQHVNTTDSAV
Sbjct: 60 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIHTKRASGAGGQHVNTTDSAV 119
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTG+ E Q++RSQ+KNR A+ KL+ +Y + EE+ ++
Sbjct: 120 RIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMYLEEETSK 164
Score = 119 (46.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 38/100 (38%), Positives = 56/100 (56%)
Query: 78 SQIKNRANALAKLKRL-IYE-IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCT 135
S+I +A A + L Y+ ++FE +R V+ V K + IH + + +P T
Sbjct: 30 SEIGGLRHASASIGGLEAYKHMKFEGGVHR--VQRVPKTEKQGRIHTSTMTVAILPQP-T 86
Query: 136 TLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ + + KDL++ TKRA+GAGGQHVNTTDSA RI
Sbjct: 87 EIN-----LVINPKDLRIHTKRASGAGGQHVNTTDSAVRI 121
Score = 91 (37.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
+++LEE+ K + R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 155 SMYLEEETSKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLL 214
Query: 198 HELISDIRQH-DYQFRID 214
EL+ ++ + DY+ ++
Sbjct: 215 DELVQSLKDYADYESLVE 232
>UNIPROTKB|F1MCM1 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 IPI:IPI00714066 UniGene:Bt.20306
GeneTree:ENSGT00390000011879 OMA:VEIHAND EMBL:DAAA02027199
Ensembl:ENSBTAT00000012219 Uniprot:F1MCM1
Length = 380
Score = 352 (129.0 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 63/105 (60%), Positives = 88/105 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK 306
Score = 118 (46.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ KDL+++TKRA+GAGGQHVNTTDSA RI
Sbjct: 234 INPKDLRIDTKRASGAGGQHVNTTDSAVRI 263
Score = 82 (33.9 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
++ LEE+ K R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 297 SLQLEEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLL 356
Query: 198 HELISDIRQH-DYQFRID 214
EL+ ++ + +Y+ ++
Sbjct: 357 DELVQSLKDYANYESLVE 374
>UNIPROTKB|Q2KI15 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:BC112806 IPI:IPI00714066 RefSeq:NP_001039843.1
UniGene:Bt.20306 ProteinModelPortal:Q2KI15 STRING:Q2KI15
PRIDE:Q2KI15 GeneID:534354 KEGG:bta:534354 CTD:54516 eggNOG:COG0216
HOGENOM:HOG000074815 HOVERGEN:HBG017071 InParanoid:Q2KI15 KO:K02835
OrthoDB:EOG49W2G0 NextBio:20876372 Uniprot:Q2KI15
Length = 380
Score = 352 (129.0 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 63/105 (60%), Positives = 88/105 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTGI E Q++RSQ+KN+ A+ KL+ +Y +Q EE+ ++
Sbjct: 262 RIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQLEEETSK 306
Score = 118 (46.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ KDL+++TKRA+GAGGQHVNTTDSA RI
Sbjct: 234 INPKDLRIDTKRASGAGGQHVNTTDSAVRI 263
Score = 82 (33.9 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 143 AVHLEEKDLKVETKRATGAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAML 197
++ LEE+ K R G + + T + +R+TDHRI ++++++ FM G +L
Sbjct: 297 SLQLEEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLL 356
Query: 198 HELISDIRQH-DYQFRID 214
EL+ ++ + +Y+ ++
Sbjct: 357 DELVQSLKDYANYESLVE 374
>ZFIN|ZDB-GENE-030131-8198 [details] [associations]
symbol:mtrf1l "mitochondrial translational release
factor 1-like" species:7955 "Danio rerio" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:0003747 "translation release factor
activity" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 ZFIN:ZDB-GENE-030131-8198 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
EMBL:CU651596 IPI:IPI00802409 Ensembl:ENSDART00000084094
Uniprot:F1QA94
Length = 339
Score = 343 (125.8 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 64/105 (60%), Positives = 83/105 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTE GR HTST++VA+LPQP +I ++ KDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 161 VQRVPKTESKGRTHTSTMTVAILPQPTEISFTINPKDLKIETKRASGAGGQHVNTTDSAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+TH+PTG E Q++RSQIKN+ A+ L+ +Y + EE+ +R
Sbjct: 221 RITHLPTGTVAECQQERSQIKNKDTAMKLLRAKLYSARLEEETSR 265
Score = 133 (51.9 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 52/154 (33%), Positives = 76/154 (49%)
Query: 30 EVHLDEKDLKVETKRATGAGGQHVNT-TDSAVRMTH---IPTGISVESQE-DRSQIKNRA 84
E D +L +E + G GGQ T M G S + E + S++
Sbjct: 80 EEESDMSELVLEV--SAGVGGQEAMLFTAEIFEMYQNYAAFNGWSFDVLEANASELGGVR 137
Query: 85 NALAKLKR-LIYE-IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCP 142
+A A + L Y+ ++FE +R V+ V K ++ H + + +P T + +
Sbjct: 138 HASASVSGPLSYKKLKFEAGVHR--VQRVPKTESKGRTHTSTMTVAILPQP-TEISFT-- 192
Query: 143 AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ KDLK+ETKRA+GAGGQHVNTTDSA RIT
Sbjct: 193 ---INPKDLKIETKRASGAGGQHVNTTDSAVRIT 223
Score = 88 (36.0 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQ 210
DRITDHRI +TV++V F+ G +L E+I ++Q Q
Sbjct: 291 DRITDHRIGKTVHDVHGFLQGEELLEEMIVFLQQFSEQ 328
>TIGR_CMR|GSU_3104 [details] [associations]
symbol:GSU_3104 "peptide chain release factor 1"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 OMA:SVMLEIR RefSeq:NP_954145.1
ProteinModelPortal:Q748B1 SMR:Q748B1 GeneID:2688463
KEGG:gsu:GSU3104 PATRIC:22029063
BioCyc:GSUL243231:GH27-3086-MONOMER Uniprot:Q748B1
Length = 355
Score = 320 (117.7 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +DIEV ++ DLK++ RA+GAGGQHVN T+SAV
Sbjct: 180 VQRVPETEAQGRIHTSACTVAVLPEAEDIEVDINPADLKIDVYRASGAGGQHVNKTESAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+THIPTGI VE Q++RSQIKNRA A+ LK I + +EQ R
Sbjct: 240 RITHIPTGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNAR 284
Score = 74 (31.1 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 144 VHLEEKD-LKVETKRATGAG--GQHVNTTDSAD-RITDHRIQRTVYNVAEFMSGGAMLHE 199
+H E+ + + K+ G+G + + T + R+TDHRI T+Y + M G + E
Sbjct: 277 LHQEQNARIAADRKQQVGSGDRSERIRTYNFPQGRMTDHRIGLTLYRLDSLMEGD--IAE 334
Query: 200 LISDIRQHDYQ 210
++ +R H YQ
Sbjct: 335 VVDALRTH-YQ 344
>FB|FBgn0032486 [details] [associations]
symbol:CG5705 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=ISS]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE014134 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
KO:K02835 GeneTree:ENSGT00390000011879 HSSP:P07012 EMBL:AY061245
RefSeq:NP_609617.1 UniGene:Dm.3674 SMR:Q9VK20 IntAct:Q9VK20
MINT:MINT-821247 STRING:Q9VK20 EnsemblMetazoa:FBtr0080444
GeneID:34720 KEGG:dme:Dmel_CG5705 UCSC:CG5705-RA
FlyBase:FBgn0032486 InParanoid:Q9VK20 OMA:AEKDEDM OrthoDB:EOG46WWQX
GenomeRNAi:34720 NextBio:789875 Uniprot:Q9VK20
Length = 392
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 70/124 (56%), Positives = 97/124 (78%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TEKSGR+HTST S+ V+P+P DI+VH+ EKDLK+ETKRA+GAGGQHVNTTDSAV
Sbjct: 204 VQRVPATEKSGRMHTSTASITVIPRPADIQVHIAEKDLKIETKRASGAGGQHVNTTDSAV 263
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
R+ H+PTG++VE+Q +RSQ+KNR A+ +L+ + + Q E E ++ TK++ + +
Sbjct: 264 RIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQQLESVE---ASKMATKKAQQGSL 320
Query: 121 HRTE 124
+R E
Sbjct: 321 NRNE 324
Score = 143 (55.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 97 IQFEEQENRWVVRL-VTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++E +R V R+ T++S R +H + + I P VH+ EKDLK+ET
Sbjct: 195 LRYEAGVHR-VQRVPATEKSGR--MHTSTASITVIPRPADI------QVHIAEKDLKIET 245
Query: 156 KRATGAGGQHVNTTDSADRI 175
KRA+GAGGQHVNTTDSA RI
Sbjct: 246 KRASGAGGQHVNTTDSAVRI 265
>TIGR_CMR|NSE_0406 [details] [associations]
symbol:NSE_0406 "peptide chain release factor 1"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_506293.1 ProteinModelPortal:Q2GE03 SMR:Q2GE03
STRING:Q2GE03 GeneID:3931950 KEGG:nse:NSE_0406 PATRIC:22680869
ProtClustDB:CLSK2527657 BioCyc:NSEN222891:GHFU-429-MONOMER
Uniprot:Q2GE03
Length = 367
Score = 316 (116.3 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 58/98 (59%), Positives = 82/98 (83%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE +GR+HTST +VAVLP+P+D++V +++KDL+++ R++G GGQ VNTTDSAV
Sbjct: 186 VQRVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAV 245
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+THIPTGI V Q+++SQ KNRA A+ L+ +YEI+
Sbjct: 246 RITHIPTGIVVIQQDEKSQHKNRAKAMKVLRVRLYEIE 283
Score = 109 (43.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 84 ANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPA 143
ANA + +++FE +R V R+ SA I H + + + EP
Sbjct: 164 ANASISGSDVFAKLKFESGVHR-VQRVPETESAGRI-HTSTATVAVLPEPEDV------D 215
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + +KDL+++ R++G GGQ VNTTDSA RIT
Sbjct: 216 VKINDKDLRIDVYRSSGPGGQSVNTTDSAVRIT 248
Score = 59 (25.8 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
RITDHRI T Y + E + G + + + IR+++
Sbjct: 317 RITDHRINLTTYRINETVKEGELEPIIEALIRENE 351
>UNIPROTKB|O75570 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=TAS] [GO:0006449 "regulation of
translational termination" evidence=TAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0006449 GO:GO:0016149 EMBL:AL354696
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
CTD:9617 OrthoDB:EOG48KRBQ EMBL:AF072934 EMBL:BC042196
IPI:IPI00026157 RefSeq:NP_004285.2 UniGene:Hs.382176
ProteinModelPortal:O75570 SMR:O75570 IntAct:O75570 STRING:O75570
PhosphoSite:O75570 PRIDE:O75570 Ensembl:ENST00000379477
Ensembl:ENST00000379480 Ensembl:ENST00000452359 GeneID:9617
KEGG:hsa:9617 UCSC:uc001uxx.3 GeneCards:GC13M041790 HGNC:HGNC:7469
HPA:HPA043316 MIM:604601 neXtProt:NX_O75570 PharmGKB:PA31273
InParanoid:O75570 PhylomeDB:O75570 GenomeRNAi:9617 NextBio:36079
ArrayExpress:O75570 Bgee:O75570 CleanEx:HS_MTRF1
Genevestigator:O75570 GermOnline:ENSG00000120662 Uniprot:O75570
Length = 445
Score = 291 (107.5 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 59/108 (54%), Positives = 79/108 (73%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 260 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 319
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R
Sbjct: 320 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR 366
Score = 107 (42.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V L+ KDL+++T RA GAGGQHVN TDSA R+
Sbjct: 293 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRL 324
Score = 84 (34.6 bits), Expect = 1.4e-32, Sum P(2) = 1.4e-32
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
T A + + T + + DR++DHRI V ++ EF+ GG L +LI + Q + I +LL
Sbjct: 378 TRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAELL 437
Score = 47 (21.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
+ HIP ++E+R + R LA L + EIQ EQ
Sbjct: 93 LQHIPV-----NEENRRSLNRRHAELAPLAAIYQEIQETEQ 128
>MGI|MGI:2384815 [details] [associations]
symbol:Mtrf1 "mitochondrial translational release factor 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0006415 "translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
MGI:MGI:2384815 GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 HOVERGEN:HBG017071 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP OrthoDB:EOG48KRBQ
EMBL:AK043981 EMBL:BC028898 IPI:IPI00169629 RefSeq:NP_666072.3
UniGene:Mm.35306 ProteinModelPortal:Q8K126 SMR:Q8K126 STRING:Q8K126
PhosphoSite:Q8K126 PRIDE:Q8K126 Ensembl:ENSMUST00000022600
GeneID:211253 KEGG:mmu:211253 UCSC:uc007usw.1 InParanoid:Q8K126
NextBio:373184 Bgee:Q8K126 CleanEx:MM_MTRF1 Genevestigator:Q8K126
GermOnline:ENSMUSG00000022022 Uniprot:Q8K126
Length = 446
Score = 294 (108.6 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 62/126 (49%), Positives = 88/126 (69%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+V+T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFE----EQENRWVVRLVTK 113
SAVR+ HIPTG+ VE Q++RSQ+KN+ AL L+ +Y+ E +Q+N +++ T+
Sbjct: 321 SAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQVGTR 380
Query: 114 RSARTI 119
+ I
Sbjct: 381 AQSERI 386
Score = 111 (44.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/32 (68%), Positives = 27/32 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V ++ KDL+V+T RA GAGGQHVNTTDSA R+
Sbjct: 294 VKVDPKDLRVDTFRARGAGGQHVNTTDSAVRL 325
Score = 80 (33.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
T A + + T + + DR+TDHRI V ++ EF+ G L +LI + Q + I + L
Sbjct: 379 TRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAISEFL 438
Score = 49 (22.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 68 GISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
GIS E++ DR + R LA L + EIQ EQ
Sbjct: 96 GIS-ENEGDRRALHRRHAQLAPLAAVYQEIQEAEQ 129
>UNIPROTKB|F1RJ87 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:CU062515
RefSeq:NP_001230509.1 UniGene:Ssc.41357 Ensembl:ENSSSCT00000010343
GeneID:100155739 KEGG:ssc:100155739 Uniprot:F1RJ87
Length = 446
Score = 295 (108.9 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 59/106 (55%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 261 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 320
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
SAVR+ H+PTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E+E
Sbjct: 321 SAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKE 365
Score = 110 (43.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V ++ KDL+++T RA GAGGQHVNTTDSA R+
Sbjct: 294 VKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRL 325
Score = 78 (32.5 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
T A + + T + + DR+TDHRI V N+ EF+ G L LI + Q
Sbjct: 379 TRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDLLIQRLLQ 427
Score = 38 (18.4 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 76 DRSQIKNRANALAKLKRLIYEIQFEEQ 102
DR + R LA L + EIQ EQ
Sbjct: 103 DRRSLNRRHAELAPLAVIYKEIQEAEQ 129
>TIGR_CMR|APH_0420 [details] [associations]
symbol:APH_0420 "peptide chain release factor 1"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 RefSeq:YP_505023.1
ProteinModelPortal:Q2GKS8 STRING:Q2GKS8 GeneID:3929978
KEGG:aph:APH_0420 PATRIC:20949454 OMA:EMPEINP ProtClustDB:PRK00591
BioCyc:APHA212042:GHPM-447-MONOMER TIGRFAMs:TIGR00019
Uniprot:Q2GKS8
Length = 359
Score = 305 (112.4 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 56/103 (54%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VAVLP+ +++++ +DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 185 VQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI V Q+++SQ KN++ AL L+ +Y ++ +++E
Sbjct: 245 RITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRE 287
Score = 63 (27.2 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 148 EKDLKVETKRATGAG--GQHVNTTDSAD-RITDHRIQRTVYNVAEFMSGGAMLHELISDI 204
E+++ K G+G + + T + RITDHRI T Y + M G L E I +
Sbjct: 287 EEEISKMRKSQIGSGDRSERIRTYNFLQSRITDHRINLTSYRLDYVMKEGD-LDEFIDAL 345
Query: 205 RQHDYQFRIDQL 216
D ++ Q+
Sbjct: 346 VADDQANKLKQI 357
>UNIPROTKB|Q3MHI7 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9913 "Bos taurus" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0016149 "translation release
factor activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815
HOVERGEN:HBG017071 KO:K02835 GeneTree:ENSGT00390000011879
EMBL:BC105224 IPI:IPI00698094 RefSeq:NP_001030185.1
UniGene:Bt.37767 HSSP:P0A7I0 ProteinModelPortal:Q3MHI7
STRING:Q3MHI7 PRIDE:Q3MHI7 Ensembl:ENSBTAT00000016261 GeneID:504754
KEGG:bta:504754 CTD:9617 InParanoid:Q3MHI7 OMA:VWLFRHP
OrthoDB:EOG48KRBQ NextBio:20866812 Uniprot:Q3MHI7
Length = 447
Score = 288 (106.4 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 58/106 (54%), Positives = 79/106 (74%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLP P +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 262 VQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 321
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E++
Sbjct: 322 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKD 366
Score = 110 (43.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V ++ KDL+++T RA GAGGQHVNTTDSA R+
Sbjct: 295 VKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRL 326
Score = 84 (34.6 bits), Expect = 3.6e-32, Sum P(2) = 3.6e-32
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
T A + + T + + DR+TDHRI V N+ EF+ G L +LI + Q + I + L
Sbjct: 380 TRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDQLIQRLLQSADEEAITEFL 439
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 73 SQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
S+ DR + R LA L + EIQ EQ
Sbjct: 101 SEGDRRSLTRRHAELAPLAVIYKEIQEAEQ 130
>UNIPROTKB|E2RAT2 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
GO:GO:0005739 Gene3D:3.30.160.20 GO:GO:0016149 KO:K02835
GeneTree:ENSGT00390000011879 CTD:9617 OMA:VWLFRHP EMBL:AAEX03013173
RefSeq:XP_848713.1 ProteinModelPortal:E2RAT2
Ensembl:ENSCAFT00000007724 GeneID:485465 KEGG:cfa:485465
NextBio:20859471 Uniprot:E2RAT2
Length = 444
Score = 293 (108.2 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 59/106 (55%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V +D KDL+++T RA GAGGQHVNTTD
Sbjct: 259 VQRIPEVGLSARMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHVNTTD 318
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
SAVR+ HIPTG+ VE Q++RSQIKN+ AL L+ +Y+ Q E++
Sbjct: 319 SAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQ-QIIEKD 363
Score = 110 (43.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 21/32 (65%), Positives = 27/32 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V ++ KDL+++T RA GAGGQHVNTTDSA R+
Sbjct: 292 VKVDPKDLRIDTFRAKGAGGQHVNTTDSAVRL 323
Score = 74 (31.1 bits), Expect = 8.1e-32, Sum P(2) = 8.1e-32
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELI 201
T A + + T + + DR+TDHRI V + EF+ G L +LI
Sbjct: 377 TRAQSERIRTYNFTQDRVTDHRIAYEVRGIKEFLCGEKCLDQLI 420
Score = 44 (20.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 69 ISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
+SV ++ DR + R LA L + EIQ EQ
Sbjct: 95 LSV-NEGDRKSLNRRHAELAPLAAIYQEIQEAEQ 127
>TIGR_CMR|ECH_0597 [details] [associations]
symbol:ECH_0597 "peptide chain release factor 1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:YP_507408.1
ProteinModelPortal:Q2GGM5 SMR:Q2GGM5 STRING:Q2GGM5 GeneID:3927422
KEGG:ech:ECH_0597 PATRIC:20576648
BioCyc:ECHA205920:GJNR-599-MONOMER Uniprot:Q2GGM5
Length = 359
Score = 296 (109.3 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 54/103 (52%), Positives = 83/103 (80%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGRLHTS +VAVLP+ +++++ +DEKDL+++ R++G GGQ VNTTDSAV
Sbjct: 185 VQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTTDSAV 244
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIP+GI V Q+++SQ KN++ AL L+ +Y ++ ++++
Sbjct: 245 RITHIPSGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRD 287
Score = 68 (29.0 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 147 EEKDLKVETKRAT--GAG--GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELI 201
+++D ++ R + G+G + + T + RITDHRI T+Y + + M G L E I
Sbjct: 284 QKRDAEISQMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTLYRLDDIMKEGN-LDEFI 342
Query: 202 SDIRQHDYQFRIDQL 216
+ D ++ L
Sbjct: 343 EALIAEDEANKLKNL 357
>TIGR_CMR|CJE_1784 [details] [associations]
symbol:CJE_1784 "peptide chain release factor 1"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_179756.1 ProteinModelPortal:Q5HSH9
SMR:Q5HSH9 STRING:Q5HSH9 GeneID:3232411 KEGG:cjr:CJE1784
PATRIC:20045378 BioCyc:CJEJ195099:GJC0-1814-MONOMER Uniprot:Q5HSH9
Length = 355
Score = 299 (110.3 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 57/102 (55%), Positives = 79/102 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS ++VAV+P+ DIE+ ++ DLKV+ R++G GGQ VNTTDSAV
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+THIPTGI V +Q+ +SQ KN+ +A+ LK +YE+Q E+
Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESER 282
Score = 64 (27.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 156 KRATGAG--GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
K G+G + + T + +RI+DHRI T+Y + M G + E+I + H
Sbjct: 291 KSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDG-LFDEIIEPLITH 344
>UNIPROTKB|Q9UGC7 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005739 EMBL:CH471051 Gene3D:3.30.160.20
GO:GO:0016149 EMBL:AL080276 CTD:54516 eggNOG:COG0216
HOVERGEN:HBG017071 KO:K02835 OrthoDB:EOG49W2G0 EMBL:AK027684
EMBL:AK095240 EMBL:AK290662 EMBL:BC011873 EMBL:BC014428
EMBL:BC105973 IPI:IPI00295737 IPI:IPI00477207 IPI:IPI00513970
IPI:IPI00890825 RefSeq:NP_001107656.1 RefSeq:NP_061914.3
UniGene:Hs.225836 HSSP:Q9X183 ProteinModelPortal:Q9UGC7 SMR:Q9UGC7
STRING:Q9UGC7 PhosphoSite:Q9UGC7 DMDM:74753314 PRIDE:Q9UGC7
DNASU:54516 Ensembl:ENST00000367230 Ensembl:ENST00000367231
Ensembl:ENST00000367233 Ensembl:ENST00000414771 GeneID:54516
KEGG:hsa:54516 UCSC:uc003qpi.4 UCSC:uc003qpk.4 UCSC:uc003qpl.4
GeneCards:GC06M153308 H-InvDB:HIX0006308 HGNC:HGNC:21051
HPA:HPA036367 MIM:613542 neXtProt:NX_Q9UGC7 PharmGKB:PA134870441
InParanoid:Q9UGC7 OMA:YSMKLEE PhylomeDB:Q9UGC7 GenomeRNAi:54516
NextBio:56904 ArrayExpress:Q9UGC7 Bgee:Q9UGC7 CleanEx:HS_MTRF1L
Genevestigator:Q9UGC7 Uniprot:Q9UGC7
Length = 380
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 62/105 (59%), Positives = 87/105 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 202 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 261
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y + EE+ N+
Sbjct: 262 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINK 306
Score = 118 (46.6 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ KDL+++TKRA+GAGGQHVNTTDSA RI
Sbjct: 234 INPKDLRIDTKRASGAGGQHVNTTDSAVRI 263
>UNIPROTKB|E1BXF8 [details] [associations]
symbol:MTRF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016149 "translation release factor activity, codon
specific" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005739
Gene3D:3.30.160.20 GO:GO:0016149 GeneTree:ENSGT00390000011879
OMA:VWLFRHP EMBL:AADN02005497 IPI:IPI00591431
Ensembl:ENSGALT00000027399 Uniprot:E1BXF8
Length = 417
Score = 286 (105.7 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 61/126 (48%), Positives = 88/126 (69%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+T S R+ HT T+SV VLPQP++++V +D KDL+++T RA GAGGQHVN TD
Sbjct: 229 VQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHVNKTD 288
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANAL----AKLKRLIYEIQFEEQENRWVVRLVTK 113
SAVR+ H+PTG+ VE Q++RSQ N+ AL AKL + I E Q ++++ ++L T+
Sbjct: 289 SAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQLSQEQSARKLQLGTR 348
Query: 114 RSARTI 119
+ I
Sbjct: 349 AQSERI 354
Score = 75 (31.5 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELIS 202
T A + + T + + DR+TDHRI N+ E +SG L +LI+
Sbjct: 347 TRAQSERIRTYNFTQDRVTDHRISYDARNIKEILSGKEELDKLIN 391
>DICTYBASE|DDB_G0283175 [details] [associations]
symbol:prfA "peptide chain release factor 1"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720
dictyBase:DDB_G0283175 GO:GO:0005737 GenomeReviews:CM000153_GR
Gene3D:3.30.160.20 EMBL:AAFI02000051 GO:GO:0016149 eggNOG:COG0216
KO:K02835 RefSeq:XP_639198.1 ProteinModelPortal:Q54RE7
STRING:Q54RE7 EnsemblProtists:DDB0237484 GeneID:8623973
KEGG:ddi:DDB_G0283175 InParanoid:Q54RE7 OMA:HAAICIN
ProtClustDB:CLSZ2430394 Uniprot:Q54RE7
Length = 430
Score = 312 (114.9 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST++VA+LP+PKD+++ + ++DLKV+ R++G GGQ VNTTDSAV
Sbjct: 257 VQRVPLTETQGRIHTSTITVAILPEPKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAV 316
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYE 96
R+TH+PTGI+V Q++RSQ +NR+ A+ LK IYE
Sbjct: 317 RITHLPTGITVAMQDERSQHQNRSKAMKILKARIYE 352
Score = 100 (40.3 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 45/162 (27%), Positives = 74/162 (45%)
Query: 21 AVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD--SAVRMTHIPTGISVESQE-DR 77
++LP KD D D +E + TG + T D R + G + E E
Sbjct: 172 SLLPGSKD-----DAGDAILEIRAGTGGSEAQLFTQDVYEMYRSYCLQKGWTFEPLELSV 226
Query: 78 SQIKNRANALAKL--KRLIYEIQFEEQENRWVVRL-VTKRSARTIIHRTESPIIAFREPC 134
+++ + + K + +++E +R V R+ +T+ R IH + + EP
Sbjct: 227 TEVGGYRDVTVSVSGKGVFGFLKYESGVHR-VQRVPLTETQGR--IHTSTITVAILPEPK 283
Query: 135 TTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + ++DLKV+ R++G GGQ VNTTDSA RIT
Sbjct: 284 DV------DIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRIT 319
Score = 48 (22.0 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
DRITDHR+ N+ M+ L I +I + +++LLS
Sbjct: 387 DRITDHRVSING-NLNSCMNSDG-LDSFIDEILVEFHTKELEELLS 430
>TIGR_CMR|SPO_2461 [details] [associations]
symbol:SPO_2461 "peptide chain release factor 1"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
HSSP:P0A7I0 ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 OMA:SVMLEIR
RefSeq:YP_167678.1 ProteinModelPortal:Q5LQM7 GeneID:3194030
KEGG:sil:SPO2461 PATRIC:23378321 Uniprot:Q5LQM7
Length = 351
Score = 291 (107.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 53/98 (54%), Positives = 78/98 (79%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTS +VAVLP+ +D+++ +D D++++T R++GAGGQHVNTTDSAV
Sbjct: 179 VQRVPETESGGRIHTSAATVAVLPEAQDVDIQIDPGDIRIDTMRSSGAGGQHVNTTDSAV 238
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+TH+P+GI V S E +SQ +NR A+ LK +Y+++
Sbjct: 239 RITHLPSGIVVTSSE-KSQHRNREIAMQVLKTRLYDLE 275
Score = 110 (43.8 bits), Expect = 0.00067, P = 0.00067
Identities = 19/33 (57%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ D++++T R++GAGGQHVNTTDSA RIT
Sbjct: 209 IQIDPGDIRIDTMRSSGAGGQHVNTTDSAVRIT 241
Score = 62 (26.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 148 EKDLKVETKRATGAGGQHVNTTDSAD-RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQ 206
E+ + TG + + T + R+TDHRI T+Y + M G L E+I D
Sbjct: 282 ERSASRSAQVGTGDRSERIRTYNFPQGRMTDHRINLTLYKLDAVMQGD--LDEVI-DALA 338
Query: 207 HDYQFRI 213
D Q R+
Sbjct: 339 ADGQARM 345
>TIGR_CMR|BA_5572 [details] [associations]
symbol:BA_5572 "peptide chain release factor 1"
species:198094 "Bacillus anthracis str. Ames" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 RefSeq:NP_847729.1
RefSeq:YP_022240.1 RefSeq:YP_031417.1 ProteinModelPortal:Q81JX1
SMR:Q81JX1 DNASU:1085262 EnsemblBacteria:EBBACT00000012375
EnsemblBacteria:EBBACT00000014683 EnsemblBacteria:EBBACT00000022198
GeneID:1085262 GeneID:2819896 GeneID:2852042 KEGG:ban:BA_5572
KEGG:bar:GBAA_5572 KEGG:bat:BAS5178
BioCyc:BANT260799:GJAJ-5253-MONOMER
BioCyc:BANT261594:GJ7F-5432-MONOMER Uniprot:Q81JX1
Length = 355
Score = 290 (107.1 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 56/110 (50%), Positives = 81/110 (73%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VAVLP+ +++E+ + EKD++V+T ++G GGQ VNTT SAV
Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIY-----EIQFEEQENR 105
R+TH+PTG+ V Q+++SQIKN+ A+ L+ +Y E Q E +NR
Sbjct: 243 RLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNR 292
Score = 88 (36.0 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 49/181 (27%), Positives = 83/181 (45%)
Query: 7 TEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIP 66
+E + T + + +L PKD D+K++ VE + A G G + RM
Sbjct: 82 SELESQEKTLSERLKILLVPKDPN---DDKNVIVEVRGAAG-GDEAALFAGDLYRMY--- 134
Query: 67 TGISVESQEDRSQIKNRA-NALAKLKRLIY---------EIQFEEQENRWVVRLVTKRSA 116
E Q +++I + L K +I+ +++FE +R V+ V + +
Sbjct: 135 -SRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAHR--VQRVPETES 191
Query: 117 RTIIHRTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
IH T + +A LP + + + EKD++V+T ++G GGQ VNTT SA R+
Sbjct: 192 GGRIH-TSTATVA------VLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSAVRL 244
Query: 176 T 176
T
Sbjct: 245 T 245
Score = 62 (26.9 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 156 KRATGAG--GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFR 212
K+A G G + + T + +R+TDHRI T+ + + + G L + I+ + D R
Sbjct: 293 KQAVGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQG--KLDDFINALVMEDQAQR 350
Query: 213 ID 214
++
Sbjct: 351 ME 352
>TIGR_CMR|CPS_3552 [details] [associations]
symbol:CPS_3552 "peptide chain release factor 1"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 OMA:EMPEINP
TIGRFAMs:TIGR00019 RefSeq:YP_270226.1 ProteinModelPortal:Q47Y94
SMR:Q47Y94 STRING:Q47Y94 GeneID:3522324 KEGG:cps:CPS_3552
PATRIC:21470035 BioCyc:CPSY167879:GI48-3580-MONOMER Uniprot:Q47Y94
Length = 362
Score = 287 (106.1 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 56/105 (53%), Positives = 79/105 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +V V+P+ P+ + +++ DLKV+T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPATESQGRVHTSACTVVVMPEIPEADAIEINKADLKVDTFRASGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
+R+THIPTG+ VE QE RSQ KNRA A++ L+ + + + E++ +
Sbjct: 246 IRITHIPTGVVVECQEQRSQHKNRAQAMSVLQARLQQAEDEKRRS 290
Score = 123 (48.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETK 156
++FE +R V+ V ++ +H + ++ E +P + A+ + + DLKV+T
Sbjct: 177 MKFESGGHR--VQRVPATESQGRVHTSACTVVVMPE----IPEA-DAIEINKADLKVDTF 229
Query: 157 RATGAGGQHVNTTDSADRIT 176
RA+GAGGQHVN TDSA RIT
Sbjct: 230 RASGAGGQHVNKTDSAIRIT 249
Score = 63 (27.2 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 158 ATGAGGQHVNTTDSAD-RITDHRIQRTVYNVAEFMSGGAML 197
A+G + + T + R++DHRI T+Y + E M G L
Sbjct: 301 ASGDRSERIRTYNFPQGRMSDHRINLTLYRLNEIMEGSLQL 341
>UNIPROTKB|P0A7I0 [details] [associations]
symbol:prfA "peptide chain release factor RF1"
species:83333 "Escherichia coli K-12" [GO:0043022 "ribosome
binding" evidence=IDA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA;IDA] [GO:0006415
"translational termination" evidence=IEA;IMP] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
Gene3D:3.30.160.20 GO:GO:0043022 GO:GO:0016149 EMBL:M25323
EMBL:U18555 EMBL:D28567 PDB:2B3T PDBsum:2B3T eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 EMBL:M11519 PIR:H64867 RefSeq:NP_415729.1
RefSeq:YP_489478.1 ProteinModelPortal:P0A7I0 SMR:P0A7I0
DIP:DIP-35936N IntAct:P0A7I0 MINT:MINT-1219241 PaxDb:P0A7I0
PRIDE:P0A7I0 EnsemblBacteria:EBESCT00000004821
EnsemblBacteria:EBESCT00000015260 GeneID:12931113 GeneID:949002
KEGG:ecj:Y75_p1183 KEGG:eco:b1211 PATRIC:32117674 EchoBASE:EB0754
EcoGene:EG10761 BioCyc:EcoCyc:EG10761-MONOMER
BioCyc:ECOL316407:JW1202-MONOMER EvolutionaryTrace:P0A7I0
Genevestigator:P0A7I0 Uniprot:P0A7I0
Length = 360
Score = 284 (105.0 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 55/104 (52%), Positives = 79/104 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+R+TH+PTGI VE Q++RSQ KN+A AL+ L I+ + +++
Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQ 287
Score = 121 (47.7 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 55/180 (30%), Positives = 85/180 (47%)
Query: 8 EKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPT 67
EKS +L + V +LP+ D DE++ +E + TG G + RM
Sbjct: 87 EKSEQLEQQ-LQVLLLPKDPD-----DERNAFLEVRAGTG-GDEAALFAGDLFRMY---- 135
Query: 68 GISVESQEDRSQIKNRANA--------LAKLKRL-IY-EIQFEEQENRWVVRLVTKRSAR 117
E++ R +I + + +AK+ +Y ++FE +R V+ V ++
Sbjct: 136 SRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR--VQRVPATESQ 193
Query: 118 TIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
IH + + E P LP PA DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 194 GRIHTSACTVAVMPELPDAELPDINPA------DLRIDTFRSSGAGGQHVNTTDSAIRIT 247
Score = 66 (28.3 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
R+TDHRI T+Y + E M G L LI I Q + + DQL
Sbjct: 316 RVTDHRINLTLYRLDEVMEG--KLDMLIEPIIQ---EHQADQL 353
>UNIPROTKB|Q9KQ25 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.30.160.20 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 280 (103.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 57/104 (54%), Positives = 77/104 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ + E+ + DLK++T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+R+TH+PTGI VE Q++RSQ KN+A A++ L I Q EE +
Sbjct: 246 IRITHLPTGIVVECQDERSQHKNKAKAMSVLAARI--AQAEESK 287
Score = 117 (46.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVET 155
++FE +R V+ V A+ IH + + E P +P ++ DLK++T
Sbjct: 177 LKFESGGHR--VQRVPATEAQGRIHTSACTVAVMPEIPEAEIPE------IKASDLKIDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
R++GAGGQHVNTTDSA RIT
Sbjct: 229 FRSSGAGGQHVNTTDSAIRIT 249
Score = 70 (29.7 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
R++DHRI TVY + E M G + LI + H++Q DQL
Sbjct: 318 RVSDHRINLTVYRLTEVMEGD--MQSLIDPVI-HEHQ--ADQL 355
>TIGR_CMR|VC_2179 [details] [associations]
symbol:VC_2179 "peptide chain release factor 1" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:3.30.160.20
GO:GO:0003747 GO:GO:0016149 eggNOG:COG0216 KO:K02835 OMA:GEAGGYK
ProtClustDB:PRK00591 TIGRFAMs:TIGR00019 PIR:B82109
RefSeq:NP_231810.1 ProteinModelPortal:Q9KQ25 SMR:Q9KQ25
DNASU:2613315 GeneID:2613315 KEGG:vch:VC2179 PATRIC:20083371
Uniprot:Q9KQ25
Length = 362
Score = 280 (103.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 57/104 (54%), Positives = 77/104 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ + E+ + DLK++T R++GAGGQHVNTTDSA
Sbjct: 186 VQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVNTTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+R+TH+PTGI VE Q++RSQ KN+A A++ L I Q EE +
Sbjct: 246 IRITHLPTGIVVECQDERSQHKNKAKAMSVLAARI--AQAEESK 287
Score = 117 (46.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 97 IQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFRE-PCTTLPSSCPAVHLEEKDLKVET 155
++FE +R V+ V A+ IH + + E P +P ++ DLK++T
Sbjct: 177 LKFESGGHR--VQRVPATEAQGRIHTSACTVAVMPEIPEAEIPE------IKASDLKIDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
R++GAGGQHVNTTDSA RIT
Sbjct: 229 FRSSGAGGQHVNTTDSAIRIT 249
Score = 70 (29.7 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQL 216
R++DHRI TVY + E M G + LI + H++Q DQL
Sbjct: 318 RVSDHRINLTVYRLTEVMEGD--MQSLIDPVI-HEHQ--ADQL 355
>TIGR_CMR|CHY_2563 [details] [associations]
symbol:CHY_2563 "peptide chain release factor 1"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.160.20 GO:GO:0016149
eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0
OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
RefSeq:YP_361356.1 ProteinModelPortal:Q3A928 SMR:Q3A928
STRING:Q3A928 GeneID:3727190 KEGG:chy:CHY_2563 PATRIC:21278175
BioCyc:CHYD246194:GJCN-2562-MONOMER Uniprot:Q3A928
Length = 358
Score = 282 (104.3 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 54/103 (52%), Positives = 77/103 (74%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ +++EV ++ DL+++ A+GAGGQHVN T+SAV
Sbjct: 183 VQRVPTTESGGRIHTSTATVAVLPEAEEVEVEINPNDLRIDVFCASGAGGQHVNKTESAV 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+THIPTGI V Q+++SQ KN+ A+ L+ + + +EQE
Sbjct: 243 RITHIPTGIVVTCQDEKSQHKNKERAMKILRARLLDKARQEQE 285
Score = 64 (27.6 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 147 EEKDLKVETKRATGAG--GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISD 203
+E +L K G G + + T + +R+TDHRI T++ + + G L E+I
Sbjct: 284 QEAELASARKSQVGTGDRSERIRTYNFPQNRVTDHRIGLTLHRLDAVLEGD--LDEIIDA 341
Query: 204 IRQHDYQFRIDQL 216
+ D R+ Q+
Sbjct: 342 LITTDQAERLKQV 354
>UNIPROTKB|Q5TF45 [details] [associations]
symbol:MTRF1L "Peptide chain release factor 1-like,
mitochondrial" species:9606 "Homo sapiens" [GO:0003747 "translation
release factor activity" evidence=IEA] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0003747 EMBL:AL080276 eggNOG:COG0216
HOGENOM:HOG000074815 UniGene:Hs.225836 HGNC:HGNC:21051
IPI:IPI00514520 SMR:Q5TF45 STRING:Q5TF45 Ensembl:ENST00000448966
Uniprot:Q5TF45
Length = 164
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 59/97 (60%), Positives = 82/97 (84%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVPKTEK GR+HTST++VA+LPQP +I + ++ KDL+++TKRA+GAGGQHVNTTDSAV
Sbjct: 66 VQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAV 125
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI 97
R+ H+PTG+ E Q++RSQ+KN+ A+ KL+ +Y +
Sbjct: 126 RIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSM 162
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRI 175
+ KDL+++TKRA+GAGGQHVNTTDSA RI
Sbjct: 98 INPKDLRIDTKRASGAGGQHVNTTDSAVRI 127
>TAIR|locus:2041409 [details] [associations]
symbol:AT2G47020 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM;IEA] [GO:0006415
"translational termination" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.30.160.20 GO:GO:0016149
KO:K02835 OMA:EMPEINP TIGRFAMs:TIGR00019 EMBL:BT030058
IPI:IPI00517548 RefSeq:NP_182225.3 UniGene:At.43988
ProteinModelPortal:A2RVR7 SMR:A2RVR7 PRIDE:A2RVR7
EnsemblPlants:AT2G47020.1 GeneID:819316 KEGG:ath:AT2G47020
TAIR:At2g47020 PhylomeDB:A2RVR7 Genevestigator:Q3E6W0
Uniprot:A2RVR7
Length = 413
Score = 293 (108.2 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 55/98 (56%), Positives = 76/98 (77%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQR+P TEKSGR+HTS +SVA+LPQ +++V L +DL+++T R+ G+GGQH NTT+SAV
Sbjct: 237 VQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAV 296
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQ 98
R+ H+PTG+ V Q++RSQ NRA AL L +YEI+
Sbjct: 297 RIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIE 334
Score = 111 (44.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 55/176 (31%), Positives = 87/176 (49%)
Query: 8 EKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPT 67
E+ RL T + ++LP KD DE+D +E + TG + D RM +
Sbjct: 140 EEEKRLQTLLLK-SLLP--KD---EADERDCILEVRAGTGGEEASLFAMD-IFRMYERYS 192
Query: 68 ---GISVESQE-DRSQIKNRANALAKL-KRLIY-EIQFEEQENRWVVRL-VTKRSARTII 120
G + + S +K A A + +Y +++FE +R V R+ +T++S R I
Sbjct: 193 QKKGWKFDIVDITESDMKGYKEASAAICGASVYGKLKFESGIHR-VQRIPITEKSGR--I 249
Query: 121 HRTESPIIAFREPCTTLPSSCPA-VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
H T + +A LP + V L +DL+++T R+ G+GGQH NTT+SA RI
Sbjct: 250 H-TSAISVAI------LPQADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRI 298
Score = 47 (21.6 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 174 RITDHRIQRTVYNVAEFMSG 193
R+TDHR+ T + + + M G
Sbjct: 368 RVTDHRVGITHHAIEDMMQG 387
>TIGR_CMR|CBU_1965 [details] [associations]
symbol:CBU_1965 "peptide chain release factor 1"
species:227377 "Coxiella burnetii RSA 493" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0016149 EMBL:X78969 eggNOG:COG0216 HOGENOM:HOG000074815
KO:K02835 OMA:EMPEINP ProtClustDB:PRK00591 TIGRFAMs:TIGR00019
PIR:A61648 RefSeq:NP_820940.1 ProteinModelPortal:P47849 SMR:P47849
PRIDE:P47849 GeneID:1209878 KEGG:cbu:CBU_1965 PATRIC:17932673
BioCyc:CBUR227377:GJ7S-1939-MONOMER Uniprot:P47849
Length = 361
Score = 274 (101.5 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 54/106 (50%), Positives = 80/106 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VA++P+ +I+ + ++ +L+++T RA+GAGGQHVN TDSA
Sbjct: 186 VQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQHVNRTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKL--KRLIYEIQFEEQE 103
+R+TH+PTG+ VE Q++RSQ KN+A A++ L K L E ++QE
Sbjct: 246 IRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQE 291
Score = 63 (27.2 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 147 EEKDLKVETKRATGAG--GQHVNTTDSAD-RITDHRIQRTVYNVAEFMSG 193
++++ + K G+G + + T + R+TDHRI T+Y + E + G
Sbjct: 288 QDQEQAAKRKSLVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEVIEG 337
>ZFIN|ZDB-GENE-050220-8 [details] [associations]
symbol:zgc:113104 "zgc:113104" species:7955 "Danio
rerio" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016149
"translation release factor activity, codon specific" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 InterPro:IPR014720 ZFIN:ZDB-GENE-050220-8
GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149 HOGENOM:HOG000074815
KO:K02835 EMBL:BC090173 IPI:IPI00484442 RefSeq:NP_001012512.1
UniGene:Dr.77520 ProteinModelPortal:Q5EB09 GeneID:503530
KEGG:dre:503530 InParanoid:Q5EB09 NextBio:20866191 Uniprot:Q5EB09
Length = 235
Score = 259 (96.2 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 50/108 (46%), Positives = 75/108 (69%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T++V VLPQ +++++ + KDL+++T R+ GAGGQHVNTTD
Sbjct: 54 VQRIPEVGLSSRMQRIHTGTMTVIVLPQMEEVDIDIAPKDLRIDTFRSRGAGGQHVNTTD 113
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
SAVR+ H+PTG E Q+ RSQ+KNR AL L+ +++ +Q +
Sbjct: 114 SAVRLVHLPTGTVSECQQFRSQLKNRETALRVLRARLHQCMMGQQREQ 161
Score = 111 (44.1 bits), Expect = 0.00022, P = 0.00022
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMS 192
+ + KDL+++T R+ GAGGQHVNTTDSA R+ H TV +F S
Sbjct: 87 IDIAPKDLRIDTFRSRGAGGQHVNTTDSAVRLV-HLPTGTVSECQQFRS 134
Score = 75 (31.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
T A + + T + + DR+TDHRI ++ EFM G L +L+ ++++ + + +LL
Sbjct: 172 TRAQSERIRTYNFTQDRVTDHRIGFVTRDIKEFMRGAEGLEDLLRLLQENQDREELLKLL 231
>UNIPROTKB|B4DG01 [details] [associations]
symbol:MTRF1 "Peptide chain release factor 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
EMBL:AL354696 HOGENOM:HOG000074815 HOVERGEN:HBG017071 OMA:VWLFRHP
UniGene:Hs.382176 HGNC:HGNC:7469 EMBL:AK294343 IPI:IPI00909024
SMR:B4DG01 STRING:B4DG01 Ensembl:ENST00000430347 UCSC:uc010tff.2
Uniprot:B4DG01
Length = 468
Score = 291 (107.5 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 59/108 (54%), Positives = 79/108 (73%)
Query: 1 VQRVPKTEKSGRL---HTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTD 57
VQR+P+ S R+ HT T+SV VLPQP +++V LD KDL+++T RA GAGGQHVN TD
Sbjct: 273 VQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTD 332
Query: 58 SAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
SAVR+ HIPTG+ VE Q++RSQIKN+ A L+ +Y+ Q E++ R
Sbjct: 333 SAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQ-QIIEKDKR 379
Score = 107 (42.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 21/32 (65%), Positives = 26/32 (81%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V L+ KDL+++T RA GAGGQHVN TDSA R+
Sbjct: 306 VKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRL 337
Score = 47 (21.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
+ HIP ++E+R + R LA L + EIQ EQ
Sbjct: 106 LQHIPV-----NEENRRSLNRRHAELAPLAAIYQEIQETEQ 141
Score = 46 (21.3 bits), Expect = 2.8e-28, Sum P(2) = 2.8e-28
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 159 TGAGGQHVNTTD-SADRITDHRIQRTVYNV-AEFMSGG 194
T A + + T + + DR++DHRI V ++ A+ S G
Sbjct: 391 TRAQSERIRTYNFTQDRVSDHRIAYEVRDIKAQSHSTG 428
>TIGR_CMR|DET_1210 [details] [associations]
symbol:DET_1210 "peptide chain release factor 1"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 HSSP:P0A7I0 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:YP_181923.1 ProteinModelPortal:Q3Z776
STRING:Q3Z776 GeneID:3229489 KEGG:det:DET1210 PATRIC:21609455
OMA:SVMLEIR BioCyc:DETH243164:GJNF-1211-MONOMER Uniprot:Q3Z776
Length = 355
Score = 258 (95.9 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 50/106 (47%), Positives = 78/106 (73%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE SGR+HTST +VAVLPQ +++++ ++ D++V+ ++GAGGQ+V +A+
Sbjct: 183 VQRVPQTEASGRIHTSTATVAVLPQVEEVDIDINMDDVRVDIFHSSGAGGQNVQKVATAI 242
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEI-QFEEQENR 105
R+THIPTG+ V Q++RSQ+KN+ A A L+ + E+ Q + E R
Sbjct: 243 RLTHIPTGLVVCCQDERSQLKNKNKAFAVLRARLMELEQSKVDEER 288
Score = 70 (29.7 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 152 KVETKRA-TGAG--GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQH 207
+ E++RA G + + T + DR+TDHRI T +N+ + G L E+I + H
Sbjct: 288 RTESRRAQVGQADRSEKIRTYNFPQDRLTDHRIGLTAHNLPHILEG--YLDEIIDTLATH 345
Query: 208 D 208
+
Sbjct: 346 E 346
>UNIPROTKB|P66016 [details] [associations]
symbol:prfA "Peptide chain release factor 1" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_00093 InterPro:IPR000352 InterPro:IPR004373
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842576 Gene3D:3.30.160.20 GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 PIR:G70773 RefSeq:NP_215815.1 RefSeq:NP_335786.1
RefSeq:YP_006514676.1 ProteinModelPortal:P66016 SMR:P66016
PRIDE:P66016 EnsemblBacteria:EBMYCT00000003633
EnsemblBacteria:EBMYCT00000071350 GeneID:13319881 GeneID:886948
GeneID:924722 KEGG:mtc:MT1338 KEGG:mtu:Rv1299 KEGG:mtv:RVBD_1299
PATRIC:18124710 TubercuList:Rv1299 OMA:VEIHAND Uniprot:P66016
Length = 357
Score = 266 (98.7 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 53/103 (51%), Positives = 73/103 (70%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS V V P+P+++ +V +DE DL+++ R++G GGQ VNTTDSA
Sbjct: 185 VQRVPVTESQGRVHTSAAGVLVYPEPEEVGQVQIDESDLRIDVFRSSGKGGQGVNTTDSA 244
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+TH+PTGI V Q +RSQ++N+ AL L + + EEQ
Sbjct: 245 VRITHLPTGIVVTCQNERSQLQNKTRALQVLAARL-QAMAEEQ 286
Score = 111 (44.1 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 97 IQFEEQENRWVVRL-VTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
++FE +R V R+ VT+ R +H + + ++ + EP V ++E DL+++
Sbjct: 176 MKFEGGVHR-VQRVPVTESQGR--VHTSAAGVLVYPEP-----EEVGQVQIDESDLRIDV 227
Query: 156 KRATGAGGQHVNTTDSADRIT 176
R++G GGQ VNTTDSA RIT
Sbjct: 228 FRSSGKGGQGVNTTDSAVRIT 248
Score = 54 (24.1 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQ 215
+RITDHRI +N+ + + G L L + D Q R+ Q
Sbjct: 316 NRITDHRIGYKSHNLDQVLDGD--LDALFDALSAADKQSRLRQ 356
>TAIR|locus:2099137 [details] [associations]
symbol:APG3 "AT3G62910" species:3702 "Arabidopsis
thaliana" [GO:0003747 "translation release factor activity"
evidence=IGI;ISS] [GO:0006415 "translational termination"
evidence=IGI;ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009658 "chloroplast organization" evidence=IMP;NAS]
[GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP]
[GO:0032544 "plastid translation" evidence=IGI] [GO:0006783 "heme
biosynthetic process" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0034660 "ncRNA metabolic process"
evidence=RCA] [GO:0042793 "transcription from plastid promoter"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] HAMAP:MF_00093 InterPro:IPR000352
InterPro:IPR004373 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.30.160.20
GO:GO:0009658 GO:GO:0010027 GO:GO:0003747 GO:GO:0032544
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
TIGRFAMs:TIGR00019 OMA:SVMLEIR HSSP:P07012 EMBL:AY090253
EMBL:AY125535 EMBL:AB109893 IPI:IPI00529197 RefSeq:NP_191850.2
UniGene:At.28015 ProteinModelPortal:Q8RX79 SMR:Q8RX79 STRING:Q8RX79
PaxDb:Q8RX79 PRIDE:Q8RX79 EnsemblPlants:AT3G62910.1 GeneID:825466
KEGG:ath:AT3G62910 TAIR:At3g62910 InParanoid:Q8RX79
PhylomeDB:Q8RX79 ProtClustDB:CLSN2690621 Genevestigator:Q8RX79
Uniprot:Q8RX79
Length = 422
Score = 263 (97.6 bits), Expect = 6.5e-27, Sum P(2) = 6.5e-27
Identities = 47/105 (44%), Positives = 77/105 (73%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP+TE GR+HTST +VA++P+ ++EV +D KD+++ + R+ GAGGQ+VN ++A+
Sbjct: 240 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAI 299
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
+ H P+GI + E+R+QI+N+A A L+ +YEI+ EQ+ +
Sbjct: 300 DLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEK 344
Score = 60 (26.2 bits), Expect = 6.5e-27, Sum P(2) = 6.5e-27
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 144 VHLEEKDLKVETKR----ATGAGGQHVNTTDSAD-RITDHRIQRTVYNVAEFMSG 193
+ + E+ K+ +R TGA + + T + D R+TDHR++ + + F+ G
Sbjct: 336 IKVREQQEKIRNERKSQVGTGARSEKIRTYNYKDSRVTDHRLKMN-FALTTFLDG 389
>SGD|S000003111 [details] [associations]
symbol:MRF1 "Mitochondrial translation release factor"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA;IMP] [GO:0070126 "mitochondrial translational
termination" evidence=IGI;IMP] [GO:0006415 "translational
termination" evidence=IEA;IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA;IGI;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0032543 "mitochondrial translation" evidence=IMP]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 SGD:S000003111 InterPro:IPR014720
GO:GO:0005739 EMBL:BK006941 Gene3D:3.30.160.20 GO:GO:0003747
EMBL:X99960 GO:GO:0016149 RefSeq:NP_011376.3 GeneID:852738
KEGG:sce:YGL139W EMBL:X60381 GO:GO:0070126 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 GeneTree:ENSGT00390000011879
OrthoDB:EOG4JWZP5 EMBL:Z72665 PIR:S28602 RefSeq:NP_011372.3
ProteinModelPortal:P30775 SMR:P30775 DIP:DIP-2626N IntAct:P30775
MINT:MINT-427494 STRING:P30775 PaxDb:P30775 EnsemblFungi:YGL143C
GeneID:852734 KEGG:sce:YGL143C CYGD:YGL143c OMA:PPHPFAD
NextBio:972135 Genevestigator:P30775 GermOnline:YGL143C
Uniprot:P30775
Length = 413
Score = 252 (93.8 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 56/112 (50%), Positives = 75/112 (66%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-----PKDIEVH---LDEKDLKVETKRATGAGGQH 52
VQR+P TE GR HTST +V VLPQ K I+ + +++V+ RA+G GGQH
Sbjct: 229 VQRIPSTETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGGQH 288
Query: 53 VNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQE 103
VNTTDSAVR+THIP+GI V Q++RSQ KN+A A L+ RL + + E++E
Sbjct: 289 VNTTDSAVRLTHIPSGIVVSMQDERSQHKNKAKAFTILRARLAEKERLEKEE 340
Score = 66 (28.3 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 147 EEKDLKVETKRATGAG-GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHELISDI 204
EEK+ K + + + T + +RITDHR T+ ++ +SG L E+I +
Sbjct: 339 EEKERKARKSQVSSTNRSDKIRTYNFPQNRITDHRCGFTLLDLPGVLSG-ERLDEVIEAM 397
Query: 205 RQHDYQFRIDQLL 217
++D R +LL
Sbjct: 398 SKYDSTERAKELL 410
>TIGR_CMR|SO_3833 [details] [associations]
symbol:SO_3833 "peptide chain release factor 1"
species:211586 "Shewanella oneidensis MR-1" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00093
InterPro:IPR000352 InterPro:IPR004373 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016149 eggNOG:COG0216
HOGENOM:HOG000074815 KO:K02835 OMA:GEAGGYK ProtClustDB:PRK00591
TIGRFAMs:TIGR00019 RefSeq:NP_719366.1 ProteinModelPortal:Q8EAR3
SMR:Q8EAR3 GeneID:1171478 KEGG:son:SO_3833 PATRIC:23527352
Uniprot:Q8EAR3
Length = 363
Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
Identities = 62/116 (53%), Positives = 80/116 (68%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIE-VHLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP+TE GR+HTS V+V V+ + + E + ++ DLKV+T R++GAGGQHVN TDSA
Sbjct: 186 VQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVNKTDSA 245
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRS 115
+R+THIPTGI VE Q+ RSQ KNRA A++ L IQ E E R T+RS
Sbjct: 246 IRITHIPTGIVVECQDQRSQHKNRAQAMSVLAA---RIQAVEDEKRRSAEESTRRS 298
Score = 121 (47.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 96 EIQFEEQENRWVVRLVTKRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVET 155
+++FE +R V+ V + ++ +H + ++ E +P + A+ + DLKV+T
Sbjct: 176 KLKFESGGHR--VQRVPETESQGRVHTSAVTVVVMHE----VPEA-EAISINPADLKVDT 228
Query: 156 KRATGAGGQHVNTTDSADRIT 176
R++GAGGQHVN TDSA RIT
Sbjct: 229 FRSSGAGGQHVNKTDSAIRIT 249
>CGD|CAL0003702 [details] [associations]
symbol:orf19.1303 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003747 "translation release
factor activity" evidence=IEA] [GO:0070126 "mitochondrial
translational termination" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 CGD:CAL0003702 GO:GO:0005737
Gene3D:3.30.160.20 GO:GO:0016149 EMBL:AACQ01000138
HOGENOM:HOG000074815 KO:K02835 RefSeq:XP_709944.1
ProteinModelPortal:Q59TR5 STRING:Q59TR5 GeneID:3645356
KEGG:cal:CaO19.1303 Uniprot:Q59TR5
Length = 394
Score = 241 (89.9 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 57/110 (51%), Positives = 76/110 (69%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHL--DEK-----DLKVETKRATGAGGQH 52
VQR+P+TE GR+HTST +V VLP+ + E L DE+ +++++T RA G GGQH
Sbjct: 223 VQRIPETETKGRVHTSTAAVVVLPKLSEGNESSLKDDERVFAPGEVRIDTMRAGGKGGQH 282
Query: 53 VNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEE 101
VNTTDSAVR+ HIPTG+ V Q++RSQ N+A A A L+ RL + Q EE
Sbjct: 283 VNTTDSAVRLLHIPTGMIVIQQDERSQPLNKAKAFAILRSRLAQKEQEEE 332
Score = 56 (24.8 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 146 LEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISDIR 205
L++K L+ + +T + +R+TDHRI +++++ E + G L +LI R
Sbjct: 334 LKQKKLRTDQVSSTDRSDKIKTYNYKENRVTDHRINYSMHDL-EGVLEGRKLGQLIDVYR 392
>ASPGD|ASPL0000035902 [details] [associations]
symbol:AN3462 species:162425 "Emericella nidulans"
[GO:0070126 "mitochondrial translational termination" evidence=IEA]
[GO:0016149 "translation release factor activity, codon specific"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:BN001306 GO:GO:0016149 HOGENOM:HOG000074815
OMA:QCQAGNA EnsemblFungi:CADANIAT00009571 Uniprot:C8VHA3
Length = 418
Score = 228 (85.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 54/121 (44%), Positives = 71/121 (58%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI--------------EVHLDEKDLKVETKRAT 46
VQRVP TE GR HTS VSV VLP D + ++D ++++ E RA+
Sbjct: 219 VQRVPTTEAKGRTHTSAVSVMVLPSFPDTGGGDGAFNFDDPNSDYYIDPQEVRTEKMRAS 278
Query: 47 GAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRW 106
GAGGQHVN T+SA+R+TH+PTGI V Q+ RSQ NR A L+ + E + E +E
Sbjct: 279 GAGGQHVNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRAKLAEARQEAREQEL 338
Query: 107 V 107
V
Sbjct: 339 V 339
Score = 66 (28.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 148 EKDLKVETKRAT--GAG----GQHVNTTD-SADRITDHRIQRTVYNVAEFMSGGAMLHEL 200
E++L VE +R G G G V T + R TDHR TV+N+ + GG L ++
Sbjct: 335 EQEL-VELRRGAMGGIGRMGRGDKVRTYNYGQSRCTDHRSGFTVHNLDNVLEGGETLVKV 393
Query: 201 ISDIR 205
+ +R
Sbjct: 394 MDSVR 398
>TIGR_CMR|CJE_1628 [details] [associations]
symbol:CJE_1628 "peptide chain release factor 2"
species:195099 "Campylobacter jejuni RM1221" [GO:0003747
"translation release factor activity" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000025 GenomeReviews:CP000025_GR eggNOG:COG1186
GO:GO:0016149 RefSeq:YP_179609.1 ProteinModelPortal:Q5HSX6
STRING:Q5HSX6 GeneID:3232256 KEGG:cjr:CJE1628 PATRIC:20045053
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
BioCyc:CJEJ195099:GJC0-1658-MONOMER PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 Uniprot:Q5HSX6
Length = 365
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 52/103 (50%), Positives = 73/103 (70%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R + +GR HTS SV V P+ DIE+ ++EKD++++ RA+GAGGQHVN T+SAVR
Sbjct: 202 RTSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVR 261
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
+TH PTGI V+ Q DRSQ KN+A A LK +YE++ +Q++
Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQD 304
Score = 111 (44.1 bits), Expect = 0.00055, P = 0.00055
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ +EEKD++++ RA+GAGGQHVN T+SA RIT
Sbjct: 231 IEIEEKDIRIDYYRASGAGGQHVNKTESAVRIT 263
>TIGR_CMR|GSU_2278 [details] [associations]
symbol:GSU_2278 "peptide chain release factor 2,
programmed frameshift" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:NP_953327.1
ProteinModelPortal:Q74AS3 SMR:Q74AS3 GeneID:2686956
KEGG:gsu:GSU2278 PATRIC:22027411 ProtClustDB:CLSK828793
Uniprot:Q74AS3
Length = 372
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 53/102 (51%), Positives = 73/102 (71%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ + + R HTS SV V P+ +D IE+ + E DL+V+T R++GAGGQHVNTTDSAVR
Sbjct: 201 RISPFDSNARRHTSFASVFVFPEIEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVR 260
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+TH+PTGI V Q +RSQ N+A AL L+ +YE + +E+E
Sbjct: 261 LTHLPTGIVVACQCERSQHLNKATALRMLRAKLYEKELQERE 302
Score = 114 (45.2 bits), Expect = 0.00025, P = 0.00025
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + E DL+V+T R++GAGGQHVNTTDSA R+T
Sbjct: 230 IKIAESDLRVDTYRSSGAGGQHVNTTDSAVRLT 262
>TIGR_CMR|CHY_0163 [details] [associations]
symbol:CHY_0163 "peptide chain release factor 2,
programmed frameshift" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003747 "translation release factor
activity" evidence=ISS] [GO:0006415 "translational termination"
evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:CP000141 GenomeReviews:CP000141_GR Gene3D:3.30.160.20
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_359035.1 ProteinModelPortal:Q3AFP9 STRING:Q3AFP9
GeneID:3727359 KEGG:chy:CHY_0163 PATRIC:21273511 Uniprot:Q3AFP9
Length = 371
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQ-PKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
R+ + SGR HTS SV VLP+ +DI E+ L E++LK+ET R+ GAGGQHVN T+SAV
Sbjct: 201 RISPFDFSGRRHTSFASVDVLPEVAEDIPEIELKEEELKIETFRSGGAGGQHVNKTESAV 260
Query: 61 RMTHIPTGISVESQEDRSQIKNRANA--LAKLKRLIYEIQFEEQE 103
R+TH+PTGI+V Q +RSQ+ NRA A L K K L E++ +E+E
Sbjct: 261 RITHLPTGITVVCQNERSQLMNRALAEKLLKAKLLDLEMKKKEEE 305
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 22/35 (62%), Positives = 29/35 (82%)
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
P + L+E++LK+ET R+ GAGGQHVN T+SA RIT
Sbjct: 229 PEIELKEEELKIETFRSGGAGGQHVNKTESAVRIT 263
>TIGR_CMR|APH_0479 [details] [associations]
symbol:APH_0479 "peptide chain release factor 2,
programmed frameshift" species:212042 "Anaplasma phagocytophilum
HZ" [GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG1186 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 RefSeq:YP_505078.1 ProteinModelPortal:Q2GKM3
STRING:Q2GKM3 GeneID:3930254 KEGG:aph:APH_0479 PATRIC:20949594
ProtClustDB:CLSK747346 Uniprot:Q2GKM3
Length = 376
Score = 250 (93.1 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 50/104 (48%), Positives = 74/104 (71%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ + + + HTS SV V P +I++ + EKDL+++T RA+GAGGQHVN T+SAVR
Sbjct: 204 RISPFDHAAKRHTSFASVEVSPVVDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVR 263
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
+THIP+G+ V+ Q RSQ +NRA A + LK +YE++ +E+E R
Sbjct: 264 ITHIPSGMVVQCQTSRSQHQNRAEAYSLLKSRLYEMELQEKEKR 307
Score = 111 (44.1 bits), Expect = 0.00058, P = 0.00058
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + EKDL+++T RA+GAGGQHVN T+SA RIT
Sbjct: 233 IKILEKDLRIDTYRASGAGGQHVNKTESAVRIT 265
>TIGR_CMR|NSE_0604 [details] [associations]
symbol:NSE_0604 "peptide chain release factor 2,
programmed frameshift" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 eggNOG:COG1186 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016149 HOGENOM:HOG000074814
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020
RefSeq:YP_506484.1 ProteinModelPortal:Q2GDG2 STRING:Q2GDG2
GeneID:3931929 KEGG:nse:NSE_0604 PATRIC:22681243 OMA:SAVRITY
ProtClustDB:CLSK2527643 Uniprot:Q2GDG2
Length = 365
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 47/104 (45%), Positives = 73/104 (70%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPK-DIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ + + + HTS + V P + +I + +DEKDLK++T RA+GAGGQHVN T+SA+R
Sbjct: 202 RISPFDANAKRHTSFAKIFVSPCIEGEINISIDEKDLKIDTYRASGAGGQHVNKTESAIR 261
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
+TH+P+ I V+SQ RSQ +N+A A+ LK +YEI+ ++E +
Sbjct: 262 ITHLPSKIVVQSQSSRSQHQNKAEAMQMLKSRLYEIELRKKEEK 305
Score = 119 (46.9 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++EKDLK++T RA+GAGGQHVN T+SA RIT
Sbjct: 231 ISIDEKDLKIDTYRASGAGGQHVNKTESAIRIT 263
>POMBASE|SPAC2F7.17 [details] [associations]
symbol:SPAC2F7.17 "mitochondrial peptide chain release
factor (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003747 "translation release factor activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0006415
"translational termination" evidence=ISS] [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0032543
"mitochondrial translation" evidence=NAS] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 PomBase:SPAC2F7.17 GO:GO:0005739
EMBL:CU329670 Gene3D:3.30.160.20 GO:GO:0032543 GO:GO:0003747
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
PIR:S58161 RefSeq:NP_592987.1 ProteinModelPortal:Q09691
STRING:Q09691 EnsemblFungi:SPAC2F7.17.1 GeneID:2541478
KEGG:spo:SPAC2F7.17 OMA:QEANSIL OrthoDB:EOG4JWZP5 NextBio:20802577
Uniprot:Q09691
Length = 396
Score = 247 (92.0 bits), Expect = 9.0e-21, P = 9.0e-21
Identities = 59/126 (46%), Positives = 75/126 (59%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVH--LDEKDLKVETKRATGAGGQHVNTTDS 58
VQR P TE GR+HTST SV VLPQ + E D ++K+E R+ GAGGQHVN T+S
Sbjct: 218 VQRTPATETKGRVHTSTASVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTES 277
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSART 118
AVR+THIPTGI+V Q+ RSQ +N+ A L + + +EN RL K T
Sbjct: 278 AVRLTHIPTGITVSMQDSRSQHQNKEKAFLVLNSRLAALN-AAKENE-AERLKRKNQV-T 334
Query: 119 IIHRTE 124
R+E
Sbjct: 335 SSDRSE 340
>DICTYBASE|DDB_G0288835 [details] [associations]
symbol:prfB "class I peptide chain release factor"
species:44689 "Dictyostelium discoideum" [GO:0016149 "translation
release factor activity, codon specific" evidence=IEA] [GO:0006415
"translational termination" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 dictyBase:DDB_G0288835
GO:GO:0005737 Gene3D:3.30.160.20 GenomeReviews:CM000154_GR
eggNOG:COG1186 EMBL:AAFI02000125 GO:GO:0016149
PANTHER:PTHR11075:SF6 RefSeq:XP_636549.1 ProteinModelPortal:Q54IC8
STRING:Q54IC8 EnsemblProtists:DDB0237485 GeneID:8626834
KEGG:ddi:DDB_G0288835 InParanoid:Q54IC8 OMA:LINESHN Uniprot:Q54IC8
Length = 424
Score = 242 (90.2 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 50/101 (49%), Positives = 69/101 (68%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ SG+ HTS SV V P D I++++D KDL ET R++GAGGQHVN T+SAVR
Sbjct: 259 RISPFSSSGKRHTSFASVVVYPISDDSIKINIDPKDLHFETLRSSGAGGQHVNKTESAVR 318
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
+ HIPTGISV S +RSQ +N++N L LK +Y + +++
Sbjct: 319 IVHIPTGISVLSSSERSQHQNKSNGLLLLKSKLYSHELKKK 359
>UNIPROTKB|P07012 [details] [associations]
symbol:prfB species:83333 "Escherichia coli K-12"
[GO:0015858 "nucleoside transport" evidence=IMP] [GO:0015864
"pyrimidine nucleoside transport" evidence=IMP] [GO:0015862
"uridine transport" evidence=IMP] [GO:0006412 "translation"
evidence=IEA] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA;IDA] [GO:0006415 "translational
termination" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
PROSITE:PS00745 SMART:SM00937 InterPro:IPR014720 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.30.160.20 EMBL:U28375
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 EMBL:M11520 EMBL:J03795 PIR:C65073
RefSeq:NP_417367.1 RefSeq:YP_491092.1 PDB:1GQE PDB:1MI6 PDB:1ML5
PDBsum:1GQE PDBsum:1MI6 PDBsum:1ML5 ProteinModelPortal:P07012
SMR:P07012 DIP:DIP-10559N IntAct:P07012 MINT:MINT-1238444
PaxDb:P07012 PRIDE:P07012 EnsemblBacteria:EBESCT00000002308
EnsemblBacteria:EBESCT00000016130 GeneID:12930712 GeneID:947369
KEGG:ecj:Y75_p2823 KEGG:eco:b2891 PATRIC:32121192 EchoBASE:EB0755
EcoGene:EG10762 BioCyc:EcoCyc:EG10762-MONOMER
BioCyc:ECOL316407:JW5847-MONOMER EvolutionaryTrace:P07012
Genevestigator:P07012 GO:GO:0015862 Uniprot:P07012
Length = 365
Score = 237 (88.5 bits), Expect = 7.3e-20, P = 7.3e-20
Identities = 46/103 (44%), Positives = 71/103 (68%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
V++ P + GR HTS S V P+ DI++ ++ DL+++ R +GAGGQHVN T+SA
Sbjct: 202 VRKSP-FDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESA 260
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
VR+THIPTGI + Q DRSQ KN+ A+ ++K +YE++ +++
Sbjct: 261 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKK 303
>TIGR_CMR|ECH_0705 [details] [associations]
symbol:ECH_0705 "peptide chain release factor 2,
programmed frameshift" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000236
GenomeReviews:CP000236_GR Gene3D:3.30.160.20 eggNOG:COG1186
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_507510.1
ProteinModelPortal:Q2GGC3 STRING:Q2GGC3 GeneID:3927613
KEGG:ech:ECH_0705 PATRIC:20576858 ProtClustDB:CLSK748740
Uniprot:Q2GGC3
Length = 366
Score = 226 (84.6 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 45/104 (43%), Positives = 71/104 (68%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ + + HT+ S+ V P +D + + +KDL+++T RA+GAGGQHVN T+SAVR
Sbjct: 203 RISPFNSNAKRHTTFSSILVSPVINEDTNIEILDKDLRIDTYRASGAGGQHVNKTESAVR 262
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
+THIP+GI V+ Q +RSQ +N A A LK +Y+++ +E+E +
Sbjct: 263 ITHIPSGIVVQCQNNRSQHQNLAEAHNLLKSRLYQLKLQEKEKK 306
Score = 111 (44.1 bits), Expect = 0.00055, P = 0.00055
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAMLHELISD 203
+ + +KDL+++T RA+GAGGQHVN T+SA RIT H V S L E +
Sbjct: 232 IEILDKDLRIDTYRASGAGGQHVNKTESAVRIT-HIPSGIVVQCQNNRSQHQNLAEAHNL 290
Query: 204 IRQHDYQFRIDQ 215
++ YQ ++ +
Sbjct: 291 LKSRLYQLKLQE 302
>TIGR_CMR|SPO_2585 [details] [associations]
symbol:SPO_2585 "peptide chain release factor 2"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003747 "translation
release factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745 SMART:SM00937
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR Gene3D:3.30.160.20 GO:GO:0016149
HOGENOM:HOG000074814 KO:K02836 OMA:KAWDMLR ProtClustDB:PRK00578
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 RefSeq:YP_167798.1
ProteinModelPortal:Q5LQA8 SMR:Q5LQA8 GeneID:3194310
KEGG:sil:SPO2585 PATRIC:23378573 Uniprot:Q5LQA8
Length = 375
Score = 221 (82.9 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 47/101 (46%), Positives = 69/101 (68%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR 61
R+ + + + HTS SV V P D IE+ ++ D++++T R++GAGGQHVNTTDSAVR
Sbjct: 201 RISPYDAAAKRHTSFSSVWVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVR 260
Query: 62 MTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
+THIPTGI V S E +SQ +NR A+ LK +Y+ + + +
Sbjct: 261 ITHIPTGIVVTSSE-KSQHQNRDIAMKALKSRLYQQELDRR 300
>TAIR|locus:2010748 [details] [associations]
symbol:AT1G56350 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016149 "translation release factor activity,
codon specific" evidence=IEA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0019915 "lipid storage" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
EMBL:CP002684 GO:GO:0005737 Gene3D:3.30.160.20 GO:GO:0016149
KO:K02836 PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:SAVRITY
IPI:IPI00540527 RefSeq:NP_176032.2 UniGene:At.42791
ProteinModelPortal:F4I532 SMR:F4I532 PRIDE:F4I532
EnsemblPlants:AT1G56350.1 GeneID:842089 KEGG:ath:AT1G56350
Uniprot:F4I532
Length = 482
Score = 217 (81.4 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 45/102 (44%), Positives = 66/102 (64%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPKD--IEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
R+ + R HTS +VAV+P D V +++ DL++E R+ GAGGQH NTTDSAV
Sbjct: 311 RISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAV 370
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
R+ HIPTGI+ Q +RSQ N+A+A+A L+ + +++ Q
Sbjct: 371 RIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQ 412
>WB|WBGene00020993 [details] [associations]
symbol:W03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] InterPro:IPR000352
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.30.160.20
GO:GO:0016149 eggNOG:COG0216 HOGENOM:HOG000074815 KO:K02835
GeneTree:ENSGT00390000011879 EMBL:FO080652 PIR:T15102
RefSeq:NP_500737.1 ProteinModelPortal:O44568 SMR:O44568
STRING:O44568 PaxDb:O44568 EnsemblMetazoa:W03F8.3.1
EnsemblMetazoa:W03F8.3.2 GeneID:177294 KEGG:cel:CELE_W03F8.3
UCSC:W03F8.3 CTD:177294 WormBase:W03F8.3 InParanoid:O44568
OMA:QCQAGNA NextBio:896154 Uniprot:O44568
Length = 389
Score = 208 (78.3 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 47/114 (41%), Positives = 71/114 (62%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP + R+HTST S++VLP+P+++ V + +K+E RA+G GGQ+VN +AV
Sbjct: 211 VQRVPVNDS--RMHTSTASISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAV 268
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKR 114
RMTH TGI+V ++R Q N KRL I ++Q + + ++V+KR
Sbjct: 269 RMTHKETGIAVHCMDERFQ---HLNIQIAYKRLA-AILMQKQVDAMLEKIVSKR 318
>GENEDB_PFALCIPARUM|PF14_0265 [details] [associations]
symbol:PF14_0265 "peptide chain release factor
1, putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 InterPro:IPR005139
Pfam:PF00472 Pfam:PF03462 InterPro:IPR014720 GO:GO:0005737
Gene3D:3.30.160.20 EMBL:AE014187 GO:GO:0016149 KO:K02835
RefSeq:XP_001348439.1 ProteinModelPortal:Q8ILH8
EnsemblProtists:PF14_0265:mRNA GeneID:811847 KEGG:pfa:PF14_0265
EuPathDB:PlasmoDB:PF3D7_1428600 HOGENOM:HOG000281260
ProtClustDB:CLSZ2433411 Uniprot:Q8ILH8
Length = 304
Score = 198 (74.8 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 41/105 (39%), Positives = 68/105 (64%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
V+R+PK + R+H+ST +VA+ K+ + ++ KDLK+ T R++ GGQ+VN +S
Sbjct: 145 VKRIPKNDSKNRIHSSTATVAIFFHKKEEPKYEINLKDLKISTFRSSKPGGQNVNKIESG 204
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
V + H PTGI E QE+R+Q N+ A+ +L + I ++ +E+EN
Sbjct: 205 VCILHKPTGIQTECQEERTQELNKKLAMKRLIQKIQHMESKEKEN 249
>UNIPROTKB|Q8ILH8 [details] [associations]
symbol:PF14_0265 "Peptide chain release factor 1, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 InterPro:IPR005139 Pfam:PF00472
Pfam:PF03462 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AE014187 GO:GO:0016149 KO:K02835 RefSeq:XP_001348439.1
ProteinModelPortal:Q8ILH8 EnsemblProtists:PF14_0265:mRNA
GeneID:811847 KEGG:pfa:PF14_0265 EuPathDB:PlasmoDB:PF3D7_1428600
HOGENOM:HOG000281260 ProtClustDB:CLSZ2433411 Uniprot:Q8ILH8
Length = 304
Score = 198 (74.8 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 41/105 (39%), Positives = 68/105 (64%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
V+R+PK + R+H+ST +VA+ K+ + ++ KDLK+ T R++ GGQ+VN +S
Sbjct: 145 VKRIPKNDSKNRIHSSTATVAIFFHKKEEPKYEINLKDLKISTFRSSKPGGQNVNKIESG 204
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
V + H PTGI E QE+R+Q N+ A+ +L + I ++ +E+EN
Sbjct: 205 VCILHKPTGIQTECQEERTQELNKKLAMKRLIQKIQHMESKEKEN 249
>UNIPROTKB|P66026 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00094
InterPro:IPR000352 InterPro:IPR004374 InterPro:IPR005139
InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.30.160.20 EMBL:BX842582
eggNOG:COG1186 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
OMA:KAWDMLR ProtClustDB:PRK00578 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 PIR:H70919 RefSeq:NP_217621.1 RefSeq:NP_337713.1
RefSeq:YP_006516568.1 ProteinModelPortal:P66026 SMR:P66026
EnsemblBacteria:EBMYCT00000000199 EnsemblBacteria:EBMYCT00000071451
GeneID:13317912 GeneID:888820 GeneID:926714 KEGG:mtc:MT3188
KEGG:mtu:Rv3105c KEGG:mtv:RVBD_3105c PATRIC:18128778
TubercuList:Rv3105c Uniprot:P66026
Length = 371
Score = 191 (72.3 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 43/103 (41%), Positives = 66/103 (64%)
Query: 3 RVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLD--EKDLKVETKRATGAGGQHVNTTDSAV 60
R+ + R TS V VLP + + H+D E D++V+ R++G GGQ VNTTDSAV
Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVETTD-HIDIPEGDVRVDVYRSSGPGGQSVNTTDSAV 262
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLK-RLIYEIQFEEQ 102
R+THIP+GI V Q ++SQ++N+ A+ L+ +L+ + EE+
Sbjct: 263 RLTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERKRLEER 305
>UNIPROTKB|Q74EJ1 [details] [associations]
symbol:GSU0971 "Hydrolase, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 31 VHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKL 90
V + + D+KVE RA+G GGQH NTTDSAVR+ H+PTGI V++ E RSQ +NR A+ +L
Sbjct: 3 VDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREKAMERL 62
Query: 91 KRLIYEIQFEEQENRWVVRLVTK--RSARTIIHRTESPIIAFRE 132
+ I E++E + R+ T R AR TE ++ ++
Sbjct: 63 R-----IALEKRERKAKKRIATTVPRGAREK-RLTEKKLVGMKK 100
Score = 97 (39.2 bits), Expect = 0.00010, P = 0.00010
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V + + D+KVE RA+G GGQH NTTDSA RI
Sbjct: 3 VDIRDADIKVEYYRASGPGGQHRNTTDSAVRI 34
>TIGR_CMR|GSU_0971 [details] [associations]
symbol:GSU_0971 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_952025.1 ProteinModelPortal:Q74EJ1 GeneID:2687546
KEGG:gsu:GSU0971 PATRIC:22024716 OMA:QHRNKTE ProtClustDB:CLSK828124
BioCyc:GSUL243231:GH27-988-MONOMER Uniprot:Q74EJ1
Length = 107
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 44/104 (42%), Positives = 64/104 (61%)
Query: 31 VHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKL 90
V + + D+KVE RA+G GGQH NTTDSAVR+ H+PTGI V++ E RSQ +NR A+ +L
Sbjct: 3 VDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREKAMERL 62
Query: 91 KRLIYEIQFEEQENRWVVRLVTK--RSARTIIHRTESPIIAFRE 132
+ I E++E + R+ T R AR TE ++ ++
Sbjct: 63 R-----IALEKRERKAKKRIATTVPRGAREK-RLTEKKLVGMKK 100
Score = 97 (39.2 bits), Expect = 0.00010, P = 0.00010
Identities = 20/32 (62%), Positives = 24/32 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRI 175
V + + D+KVE RA+G GGQH NTTDSA RI
Sbjct: 3 VDIRDADIKVEYYRASGPGGQHRNTTDSAVRI 34
>TAIR|locus:2158936 [details] [associations]
symbol:HCF109 "high chlorophyll fluorescent 109"
species:3702 "Arabidopsis thaliana" [GO:0003747 "translation
release factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006415 "translational termination"
evidence=IEA;ISS;IMP] [GO:0016149 "translation release factor
activity, codon specific" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006396 "RNA processing" evidence=IMP] [GO:0009657 "plastid
organization" evidence=IMP] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 EMBL:CP002688 GO:GO:0009570
Gene3D:3.30.160.20 GO:GO:0006396 GO:GO:0009657 GO:GO:0006415
GO:GO:0016149 EMBL:AB018112 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 HSSP:P07012
UniGene:At.9505 EMBL:AY056234 EMBL:AY117253 EMBL:AY084711
IPI:IPI00546331 RefSeq:NP_851096.1 ProteinModelPortal:Q9LVY0
SMR:Q9LVY0 STRING:Q9LVY0 PRIDE:Q9LVY0 EnsemblPlants:AT5G36170.1
GeneID:833614 KEGG:ath:AT5G36170 TAIR:At5g36170 InParanoid:Q9LVY0
OMA:MGWGSQI PhylomeDB:Q9LVY0 ProtClustDB:CLSN2680355
ArrayExpress:Q9LVY0 Genevestigator:Q9LVY0 Uniprot:Q9LVY0
Length = 456
Score = 187 (70.9 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 44/104 (42%), Positives = 65/104 (62%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQ-PKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDS 58
V++ P K G TS V V+P P++ + + + E+DL + RA G GGQ+VN ++
Sbjct: 281 VRQSPFNSK-GLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVET 339
Query: 59 AVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQ 102
AVR+THIPTG++V E+RSQ+ N+ AL +LK + I EEQ
Sbjct: 340 AVRITHIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIA-EEQ 382
>UNIPROTKB|Q3Z8Y6 [details] [associations]
symbol:prfB "Peptide chain release factor 2" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003747 "translation release
factor activity" evidence=ISS] [GO:0006415 "translational
termination" evidence=ISS] HAMAP:MF_00094 InterPro:IPR000352
InterPro:IPR004374 InterPro:IPR005139 InterPro:IPR020853
Pfam:PF00472 Pfam:PF03462 SMART:SM00937 InterPro:IPR014720
GO:GO:0005737 Gene3D:3.30.160.20 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG1186 GO:GO:0003747
GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836 PANTHER:PTHR11075:SF6
TIGRFAMs:TIGR00020 OMA:MGWGSQI RefSeq:YP_181313.1
ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6 GeneID:3230122
KEGG:det:DET0570 PATRIC:21608209 ProtClustDB:CLSK837416
Uniprot:Q3Z8Y6
Length = 362
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/93 (41%), Positives = 60/93 (64%)
Query: 14 HTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVE 72
HTS V V+P+ +D +++ + +D+K++ R++G GGQ+V +AVR+THIP+GI V
Sbjct: 206 HTSFALVEVMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVA 265
Query: 73 SQEDRSQIKNRANALAKL--KRLIYEIQFEEQE 103
SQ +RSQ +NR A+ L K L EI +E
Sbjct: 266 SQTERSQHQNREIAMRILASKLLAVEIAKRAEE 298
>TIGR_CMR|DET_0570 [details] [associations]
symbol:DET_0570 "peptide chain release factor 2,
programmed frameshift" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003747 "translation release factor activity"
evidence=ISS] [GO:0006415 "translational termination" evidence=ISS]
HAMAP:MF_00094 InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 InterPro:IPR020853 Pfam:PF00472 Pfam:PF03462
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:CP000027 GenomeReviews:CP000027_GR eggNOG:COG1186
GO:GO:0003747 GO:GO:0016149 HOGENOM:HOG000074814 KO:K02836
PANTHER:PTHR11075:SF6 TIGRFAMs:TIGR00020 OMA:MGWGSQI
RefSeq:YP_181313.1 ProteinModelPortal:Q3Z8Y6 STRING:Q3Z8Y6
GeneID:3230122 KEGG:det:DET0570 PATRIC:21608209
ProtClustDB:CLSK837416 Uniprot:Q3Z8Y6
Length = 362
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/93 (41%), Positives = 60/93 (64%)
Query: 14 HTSTVSVAVLPQPKD-IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVE 72
HTS V V+P+ +D +++ + +D+K++ R++G GGQ+V +AVR+THIP+GI V
Sbjct: 206 HTSFALVEVMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRVTHIPSGIVVA 265
Query: 73 SQEDRSQIKNRANALAKL--KRLIYEIQFEEQE 103
SQ +RSQ +NR A+ L K L EI +E
Sbjct: 266 SQTERSQHQNREIAMRILASKLLAVEIAKRAEE 298
>TAIR|locus:2006897 [details] [associations]
symbol:AT1G33330 species:3702 "Arabidopsis thaliana"
[GO:0003747 "translation release factor activity" evidence=IEA;ISS]
[GO:0006415 "translational termination" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=RCA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 EMBL:CP002684 GO:GO:0009507 Gene3D:3.30.160.20
GO:GO:0003747 EMBL:AC027035 EMBL:BT006129 EMBL:AK117494
IPI:IPI00545134 RefSeq:NP_174601.2 UniGene:At.28050
ProteinModelPortal:Q9C875 SMR:Q9C875 STRING:Q9C875 PRIDE:Q9C875
EnsemblPlants:AT1G33330.1 GeneID:840227 KEGG:ath:AT1G33330
TAIR:At1g33330 HOGENOM:HOG000152202 InParanoid:Q9C875 OMA:KSTIRTS
PhylomeDB:Q9C875 ProtClustDB:CLSN2680351 ArrayExpress:Q9C875
Genevestigator:Q9C875 Uniprot:Q9C875
Length = 257
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 36 KDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI 94
K ++ET R +G GGQH N DSAVR+ H+PTGI ++ EDRSQ KNRA+AL +L+ L+
Sbjct: 96 KQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNRASALNRLRTLL 154
>GENEDB_PFALCIPARUM|MAL7P1.20 [details] [associations]
symbol:MAL7P1.20 "peptide chain release factor,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 155 (59.6 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 30/74 (40%), Positives = 54/74 (72%)
Query: 33 LDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKL-K 91
+++ DL ++T R+ G GGQ+VN ++AVR+ H PT ISV++ +R+Q+ N+ NAL ++ +
Sbjct: 221 INKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKRIYE 280
Query: 92 RLIYEIQFEEQENR 105
+L+Y +Q E +N+
Sbjct: 281 KLLY-LQTEALKNK 293
>UNIPROTKB|Q8IC21 [details] [associations]
symbol:MAL7P1.20 "Peptide chain release factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000352 InterPro:IPR004374
InterPro:IPR005139 Pfam:PF00472 Pfam:PF03462 PROSITE:PS00745
SMART:SM00937 InterPro:IPR014720 GO:GO:0005737 Gene3D:3.30.160.20
EMBL:AL844506 GO:GO:0016149 HOGENOM:HOG000074814
PANTHER:PTHR11075:SF6 RefSeq:XP_001348982.1 HSSP:P07012
ProteinModelPortal:Q8IC21 IntAct:Q8IC21 MINT:MINT-1551615
EnsemblProtists:MAL7P1.20:mRNA GeneID:2655192 KEGG:pfa:MAL7P1.20
EuPathDB:PlasmoDB:PF3D7_0704900 ProtClustDB:CLSZ2434502
Uniprot:Q8IC21
Length = 352
Score = 155 (59.6 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 30/74 (40%), Positives = 54/74 (72%)
Query: 33 LDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKL-K 91
+++ DL ++T R+ G GGQ+VN ++AVR+ H PT ISV++ +R+Q+ N+ NAL ++ +
Sbjct: 221 INKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNALKRIYE 280
Query: 92 RLIYEIQFEEQENR 105
+L+Y +Q E +N+
Sbjct: 281 KLLY-LQTEALKNK 293
>UNIPROTKB|Q74FR0 [details] [associations]
symbol:GSU0546 "Peptidyl-tRNA hydrolase-related protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 27 KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANA 86
K E+ + E DL+ R++GAGGQHVN T + V++ H PTGI V+ +DRSQ NR A
Sbjct: 19 KMAELGVSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPTGIEVKCMKDRSQSVNRFLA 78
Query: 87 LAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
++ I + E V + K+ AR
Sbjct: 79 RREILERIERLNKGESPRDVRVEKLRKQKAR 109
>TIGR_CMR|GSU_0546 [details] [associations]
symbol:GSU_0546 "peptidyl-tRNA hydrolase domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0016787 EMBL:AE017180
GenomeReviews:AE017180_GR HOGENOM:HOG000244440 GO:GO:0003747
RefSeq:NP_951604.1 ProteinModelPortal:Q74FR0 GeneID:2685772
KEGG:gsu:GSU0546 PATRIC:22023849 OMA:TATCVQI ProtClustDB:CLSK827916
BioCyc:GSUL243231:GH27-530-MONOMER Uniprot:Q74FR0
Length = 126
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 35/91 (38%), Positives = 50/91 (54%)
Query: 27 KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANA 86
K E+ + E DL+ R++GAGGQHVN T + V++ H PTGI V+ +DRSQ NR A
Sbjct: 19 KMAELGVSEADLEETFVRSSGAGGQHVNKTATCVQIRHRPTGIEVKCMKDRSQSVNRFLA 78
Query: 87 LAKLKRLIYEIQFEEQENRWVVRLVTKRSAR 117
++ I + E V + K+ AR
Sbjct: 79 RREILERIERLNKGESPRDVRVEKLRKQKAR 109
>CGD|CAL0005347 [details] [associations]
symbol:orf19.5488 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR000352 Pfam:PF00472
InterPro:IPR014720 CGD:CAL0005347 Gene3D:3.30.160.20 GO:GO:0005622
eggNOG:COG1186 GO:GO:0003747 HOGENOM:HOG000217812 EMBL:AACQ01000196
EMBL:AACQ01000195 RefSeq:XP_711480.1 RefSeq:XP_711504.1
ProteinModelPortal:Q59P48 STRING:Q59P48 GeneID:3646889
GeneID:3646913 KEGG:cal:CaO19.12943 KEGG:cal:CaO19.5488
Uniprot:Q59P48
Length = 171
Score = 128 (50.1 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 30/68 (44%), Positives = 43/68 (63%)
Query: 24 PQPKDIEVHLDEKDLKVETKRA-TGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKN 82
P+PK + + E+D++ + G GGQ +N T+S V++THIPTG+ V Q RSQ +N
Sbjct: 29 PRPKHL---IKEEDIEEKFLHGGRGPGGQKINKTNSKVQLTHIPTGMVVSCQATRSQEQN 85
Query: 83 RANALAKL 90
RA A KL
Sbjct: 86 RAIAREKL 93
>POMBASE|SPBC1105.18c [details] [associations]
symbol:SPBC1105.18c "peptide release factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003747
"translation release factor activity" evidence=IEA] [GO:0004045
"aminoacyl-tRNA hydrolase activity" evidence=ISM] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006415 "translational
termination" evidence=IC] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
PomBase:SPBC1105.18c GO:GO:0005739 EMBL:CU329671 Gene3D:3.30.160.20
GO:GO:0032543 eggNOG:COG1186 GO:GO:0004045 GO:GO:0003747
GO:GO:0006415 OrthoDB:EOG4WHCWF RefSeq:NP_596474.2
ProteinModelPortal:Q9Y811 STRING:Q9Y811 EnsemblFungi:SPBC1105.18c.1
GeneID:2539814 KEGG:spo:SPBC1105.18c NextBio:20800963
Uniprot:Q9Y811
Length = 162
Score = 124 (48.7 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 26 PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRAN 85
P +E L E+D++ G GGQ +N T ++ HIPTGI V SQ+ RS+ +NR
Sbjct: 41 PYQLE-RLQEEDIEETFICGKGPGGQKINKTSIVAQVKHIPTGIIVRSQDTRSREQNRCI 99
Query: 86 ALAKLKRLIYEIQFEEQE--NRWVVRLVTKRSAR 117
A +L + E + R V R+V K+ R
Sbjct: 100 ARKRLTEKVDEFKHGNDSLLARKVQRIVKKKKQR 133
>SGD|S000004271 [details] [associations]
symbol:YLR281C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0006415 "translational
termination" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0003747 "translation release factor activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR000352
Pfam:PF00472 PROSITE:PS00745 InterPro:IPR014720 SGD:S000004271
GO:GO:0005739 Gene3D:3.30.160.20 EMBL:BK006945 EMBL:U17243
eggNOG:COG1186 GO:GO:0003747 HOGENOM:HOG000217812
GeneTree:ENSGT00390000012759 EMBL:AY557931 PIR:S50367
RefSeq:NP_013383.1 ProteinModelPortal:Q05863 SMR:Q05863
DIP:DIP-2590N STRING:Q05863 EnsemblFungi:YLR281C GeneID:850987
KEGG:sce:YLR281C CYGD:YLR281c OMA:KHERARA OrthoDB:EOG4WHCWF
NextBio:967507 Genevestigator:Q05863 GermOnline:YLR281C
Uniprot:Q05863
Length = 155
Score = 114 (45.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 31/72 (43%), Positives = 40/72 (55%)
Query: 24 PQPK---DIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQI 80
P+PK ++E EK L G GGQ +N +S V++ H PTGI VE QE RS+
Sbjct: 25 PRPKFTPEMEAQCTEKFLH----GGRGPGGQKINKCNSKVQLRHEPTGIVVECQETRSRE 80
Query: 81 KNRANALAKLKR 92
+NR A KL R
Sbjct: 81 QNRKLARLKLAR 92
>UNIPROTKB|F1NSN8 [details] [associations]
symbol:F1NSN8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:AADN02034888 EMBL:AADN02034889
EMBL:AADN02034890 EMBL:AADN02034891 EMBL:AADN02034892
IPI:IPI00587441 Ensembl:ENSGALT00000005399 Uniprot:F1NSN8
Length = 141
Score = 107 (42.7 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 31 VHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNR 83
V L E +LK + R G GGQ N T + V + H+P+GI V+ + RS KNR
Sbjct: 30 VELTEAELKEQFVRGDGPGGQATNKTSNCVVLKHVPSGIVVKCHQTRSVEKNR 82
>FB|FBgn0050100 [details] [associations]
symbol:CG30100 species:7227 "Drosophila melanogaster"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720 EMBL:AE013599
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 EMBL:BT030757 RefSeq:NP_725560.1
UniGene:Dm.38081 SMR:A1ZAD7 STRING:A1ZAD7
EnsemblMetazoa:FBtr0087140 GeneID:246457 KEGG:dme:Dmel_CG30100
UCSC:CG30100-RA FlyBase:FBgn0050100 eggNOG:NOG295143
InParanoid:A1ZAD7 OMA:CHTHRLA OrthoDB:EOG4JH9Z9 NextBio:842552
Uniprot:A1ZAD7
Length = 146
Score = 104 (41.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 33 LDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANA 86
L E D++ R +G GGQ VN T + V + H+PT I+V+ R KNR A
Sbjct: 30 LQESDIEETFMRGSGPGGQAVNKTSNCVFLRHLPTNITVKCHTHRLASKNRVEA 83
>UNIPROTKB|F5H4X5 [details] [associations]
symbol:C12orf65 "Probable peptide chain release factor
C12orf65, mitochondrial" species:9606 "Homo sapiens" [GO:0003747
"translation release factor activity" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 HGNC:HGNC:26784
EMBL:AC073857 EMBL:AC068768 IPI:IPI01014644 Ensembl:ENST00000543139
ArrayExpress:F5H4X5 Bgee:F5H4X5 Uniprot:F5H4X5
Length = 138
Score = 100 (40.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 33 LDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNR 83
LDE +L+ + + G GGQ N T + V + HIP+GI V+ + RS +NR
Sbjct: 55 LDENELEEQFVKGHGPGGQATNKTSNCVVLKHIPSGIVVKCHQTRSVDQNR 105
>UNIPROTKB|F1MLX1 [details] [associations]
symbol:C17H12orf65 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:DAAA02045238 IPI:IPI00704175
Ensembl:ENSBTAT00000027321 Uniprot:F1MLX1
Length = 173
Score = 109 (43.4 bits), Expect = 0.00011, P = 0.00011
Identities = 37/112 (33%), Positives = 55/112 (49%)
Query: 8 EKSGRLHTSTVSVAVLPQPKDIE---VHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTH 64
EK L TV+ V K + LDE++L+ + + G GGQ N T + V + H
Sbjct: 28 EKLPLLSPGTVATPVQAAGKKDRPTLLSLDERELEEQFVKGHGPGGQATNKTSNCVVLRH 87
Query: 65 IPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSA 116
+P+GI V+ + RS +NR A L+ + ++ F EN V R KR A
Sbjct: 88 VPSGIVVKCHQTRSVDQNRKLARRILQEKV-DV-FYNGENSLVCR--EKREA 135
>WB|WBGene00011941 [details] [associations]
symbol:T23B5.4 species:6239 "Caenorhabditis elegans"
[GO:0003747 "translation release factor activity" evidence=IEA]
[GO:0006415 "translational termination" evidence=IEA]
InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747
GeneTree:ENSGT00390000012759 EMBL:Z93390 RefSeq:NP_001255660.1
ProteinModelPortal:E5QCJ3 SMR:E5QCJ3 EnsemblMetazoa:T23B5.4b
GeneID:3565854 KEGG:cel:CELE_T23B5.4 CTD:3565854 WormBase:T23B5.4b
OMA:AVQLTHL Uniprot:E5QCJ3
Length = 149
Score = 104 (41.7 bits), Expect = 0.00013, P = 0.00013
Identities = 29/83 (34%), Positives = 44/83 (53%)
Query: 47 GAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKRLI-YEIQ----FEE 101
G GGQ VNT +AV++TH+PTG ++ E R KN A ++K ++ +I +EE
Sbjct: 57 GPGGQKVNTAQNAVQLTHLPTGTVLKVHESRLLPKNIDIAFERMKFVLDRQINGENCYEE 116
Query: 102 QENRWVVRLVTKRSARTIIHRTE 124
Q R + K + R + R E
Sbjct: 117 QLKRLQIAKEEKSNKRRVQARKE 139
>UNIPROTKB|P40711 [details] [associations]
symbol:arfB "peptidyl-tRNA hydrolase, ribosome rescue
factor" species:83333 "Escherichia coli K-12" [GO:0006415
"translational termination" evidence=IEA] [GO:0003747 "translation
release factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IDA]
[GO:0072344 "rescue of stalled ribosome" evidence=IDA] [GO:0004045
"aminoacyl-tRNA hydrolase activity" evidence=IEA;IDA]
InterPro:IPR000352 Pfam:PF00472 PROSITE:PS00745 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0043022 EMBL:D49445 EMBL:U70214
GO:GO:0072344 EMBL:L38619 EMBL:U18345 PIR:G64743 RefSeq:NP_414733.1
RefSeq:YP_488494.1 PDB:4DH9 PDBsum:4DH9 ProteinModelPortal:P40711
SMR:P40711 IntAct:P40711 PRIDE:P40711
EnsemblBacteria:EBESCT00000003139 EnsemblBacteria:EBESCT00000014361
GeneID:12934377 GeneID:946046 KEGG:ecj:Y75_p0188 KEGG:eco:b0191
PATRIC:32115495 EchoBASE:EB2258 EcoGene:EG12354 eggNOG:COG1186
HOGENOM:HOG000244440 KO:K15034 OMA:VLIIKAQ ProtClustDB:PRK09256
BioCyc:EcoCyc:EG12354-MONOMER BioCyc:ECOL316407:JW0187-MONOMER
BioCyc:MetaCyc:EG12354-MONOMER Genevestigator:P40711 GO:GO:0004045
GO:GO:0003747 Uniprot:P40711
Length = 140
Score = 76 (31.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 31 VHLDEKDLKVETKRATGAGGQHVNTTDSAVRM 62
V + + +L++ RA GAGGQHVN T +A+ +
Sbjct: 8 VAIPDGELEITAIRAQGAGGQHVNKTSTAIHL 39
Score = 65 (27.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 69 ISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
I +++QE RSQ NR ALA+L +I E+ E++ R
Sbjct: 70 IVIKAQEYRSQELNREAALARLVAMIKELTTEKKARR 106
>UNIPROTKB|F1RFL3 [details] [associations]
symbol:C12orf65 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003747 "translation release factor activity"
evidence=IEA] InterPro:IPR000352 Pfam:PF00472 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003747 OMA:WESSKNV
GeneTree:ENSGT00390000012759 EMBL:CU462966
Ensembl:ENSSSCT00000010716 Uniprot:F1RFL3
Length = 187
Score = 104 (41.7 bits), Expect = 0.00075, P = 0.00075
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 33 LDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANALAKLKR 92
LDE++L+ + + G GGQ N T + V + HIP+GI V+ + RS +NR A L+
Sbjct: 58 LDERELEEQFVKGHGPGGQATNKTSNCVVLRHIPSGIVVKCHQTRSVDQNRKLARRILQE 117
Query: 93 LIYEIQFEEQENRWVVRLVTKRSA 116
+ ++ F EN V + KR A
Sbjct: 118 KV-DV-FYNGENSPVYK--EKREA 137
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 218 218 0.00091 112 3 11 22 0.40 33
32 0.39 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 77
No. of states in DFA: 585 (62 KB)
Total size of DFA: 155 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.73u 0.05s 20.78t Elapsed: 00:00:05
Total cpu time: 20.74u 0.05s 20.79t Elapsed: 00:00:06
Start: Thu Aug 15 11:02:30 2013 End: Thu Aug 15 11:02:36 2013