RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1690
(218 letters)
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 175 bits (446), Expect = 1e-53
Identities = 47/104 (45%), Positives = 72/104 (69%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +V V+P+ +++E +D KDL+V+ A+GAGGQ+VN +AV
Sbjct: 198 VQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATAV 257
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+ H+PT I VE QE+R+Q KNR A+ ++ + + + ++
Sbjct: 258 RIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQD 301
Score = 61.8 bits (151), Expect = 1e-11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
++ KDL+V+ A+GAGGQ+VN +A RI
Sbjct: 228 YEIDPKDLRVDIYHASGAGGQNVNKVATAVRII 260
Score = 39.5 bits (93), Expect = 4e-04
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
+R+TDHRI T+ + +SG L E+I + +D
Sbjct: 328 NRVTDHRIGLTLQKLDSILSGK--LDEVIDALILYD 361
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 173 bits (442), Expect = 3e-53
Identities = 53/103 (51%), Positives = 74/103 (71%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ + L+ +++++ RA+G GGQ VNTTDSAV
Sbjct: 180 VQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
R+ H+PTGI V Q+ RSQIKNR AL L+ + E++ E+
Sbjct: 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEA 282
Score = 61.4 bits (150), Expect = 2e-11
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
L +++++ RA+G GGQ VNTTDSA R+
Sbjct: 210 FALNMDEIRIDVMRASGPGGQGVNTTDSAVRVV 242
Score = 39.1 bits (92), Expect = 6e-04
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
R+TDHRI T +++ +SG L ++ +++ D
Sbjct: 310 SRVTDHRIGFTTHDLEGVLSGH--LTPILEALKRAD 343
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 172 bits (437), Expect = 8e-53
Identities = 55/104 (52%), Positives = 79/104 (75%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
VQRVP TE GR+HTST +VAVLP+ ++ ++ + +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220
Query: 61 RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
R+TH+PTGI V Q +RSQ +N+ AL L+ +Y++Q E++E
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKER 264
Score = 61.1 bits (149), Expect = 2e-11
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + +DLK+ET RA+G GGQ+VN T+SA RIT
Sbjct: 191 IEIRPEDLKIETFRASGHGGQYVNKTESAVRIT 223
Score = 39.5 bits (93), Expect = 4e-04
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
R+TDHRI T Y + E + G L E+IS + +HD
Sbjct: 292 RVTDHRINYTSYRLQEILDGD--LDEIISKLIEHD 324
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 169 bits (431), Expect = 1e-51
Identities = 55/104 (52%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEV-HLDEKDLKVETKRATGAGGQHVNTTDSA 59
VQRVP TE GR+HTS +VAV+P+ D E+ ++ DL+++T R++GAGGQHVNTTDSA
Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSA 243
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
+R+TH+PTGI VE Q++RSQ KN+A AL+ L I+ + +++
Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQ 287
Score = 60.6 bits (148), Expect = 3e-11
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 143 AVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ DL+++T R++GAGGQHVNTTDSA RIT
Sbjct: 214 LPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRIT 247
Score = 39.5 bits (93), Expect = 5e-04
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 174 RITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
R+TDHRI T+Y + E M G L LI I Q
Sbjct: 316 RVTDHRINLTLYRLDEVMEGK--LDMLIEPIIQEH 348
>2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial;
GGQ domain, translation; NMR {Mus musculus}
Length = 115
Score = 140 bits (354), Expect = 4e-43
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 1 VQRVPKTEKSGRLHTSTVSVAVLPQPKDI-EVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
+Q P G + +V V + + L+E +L+ + + G GGQ N T +
Sbjct: 13 LQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNC 69
Query: 60 VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
V + H+P+GI V+ + RS +NR A L+ +
Sbjct: 70 VVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGPS 113
Score = 56.2 bits (136), Expect = 9e-11
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ L E +L+ + + G GGQ N T + +
Sbjct: 41 LPLNESELEEQFVKGHGPGGQATNKTSNCVVLK 73
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 142 bits (360), Expect = 4e-41
Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 10 SGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTG 68
SGR HTS V V+P+ +++EV L ++L+++ RA+G GGQ VNTTDSAVR+ H+PTG
Sbjct: 198 SGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVHLPTG 257
Query: 69 ISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
I+V Q RSQIKN+ AL LK +YE++ +++E
Sbjct: 258 ITVTCQTTRSQIKNKELALKILKARLYELERKKRE 292
Score = 61.9 bits (151), Expect = 1e-11
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V L+ ++L+++ RA+G GGQ VNTTDSA R+
Sbjct: 220 VVLKPEELRIDVMRASGPGGQGVNTTDSAVRVV 252
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 140 bits (356), Expect = 2e-40
Identities = 45/95 (47%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Query: 10 SGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTG 68
GR HTS S V P+ DI++ ++ DL+++ RA+GAGGQHVN T+SAVR+THIPTG
Sbjct: 210 GGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTG 269
Query: 69 ISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQE 103
I + Q DRSQ KN+ A+ ++K +YE++ +++
Sbjct: 270 IVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKN 304
Score = 61.5 bits (150), Expect = 2e-11
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ + DL+++ RA+GAGGQHVN T+SA RIT
Sbjct: 232 IEINPADLRIDVYRASGAGGQHVNRTESAVRIT 264
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 75.6 bits (186), Expect = 8e-18
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 29/121 (23%)
Query: 29 IEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMT------------------------H 64
V + + +L++ RA GAGGQHVN T +A+ +
Sbjct: 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLIS 65
Query: 65 IPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTIIHRTE 124
I +++QE RSQ NR ALA+L +I E+ E++ R T+ + + R
Sbjct: 66 SDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKA-----RRPTRPTRASKERRLA 120
Query: 125 S 125
S
Sbjct: 121 S 121
Score = 42.8 bits (101), Expect = 1e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
V + + +L++ RA GAGGQHVN T +A +
Sbjct: 6 RHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLR 40
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural
genomics, PSI-2, protein STRU initiative; NMR
{Pseudomonas syringae PV}
Length = 108
Score = 73.0 bits (179), Expect = 3e-17
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 24/100 (24%)
Query: 30 EVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTG--------------------- 68
VHL + ++++ RA GAGGQ+VN SA+ +
Sbjct: 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITS 66
Query: 69 ---ISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENR 105
I +++Q+ R+Q +NRA+AL +L LI E +
Sbjct: 67 DGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKLEHHHH 106
Score = 40.3 bits (94), Expect = 5e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
VHL + ++++ RA GAGGQ+VN SA +
Sbjct: 6 NNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLR 40
>1j26_A Immature colon carcinoma transcript 1; peptide chain release
factors, RF-1, the GGQ motif, immature carcinoma
transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Length = 112
Score = 62.8 bits (152), Expect = 3e-13
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 25/98 (25%)
Query: 24 PQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTG--------------- 68
K ++ L + R++G GGQ+VN +S +
Sbjct: 8 EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67
Query: 69 ----------ISVESQEDRSQIKNRANALAKLKRLIYE 96
+ + S+ R Q +N A L K++ +I E
Sbjct: 68 HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
Score = 33.6 bits (76), Expect = 0.011
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 142 PAVHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
+ ++ L + R++G GGQ+VN +S +
Sbjct: 13 ASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVR 47
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 32.7 bits (75), Expect = 0.081
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ V V E+M G++ L R+HD QF + QL+
Sbjct: 118 SKPVMIVTEYMENGSLDSFL----RKHDAQFTVIQLVG 151
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 31.9 bits (73), Expect = 0.12
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ + + E+M GA+ L R+ D +F + QL+
Sbjct: 118 YKPMMIITEYMENGALDKFL----REKDGEFSVLQLVG 151
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 31.1 bits (71), Expect = 0.23
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
TV + + M G +L + R+H LL+
Sbjct: 88 TSTVQLITQLMPFGCLLDYV----REHKDNIGSQYLLN 121
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 31.1 bits (71), Expect = 0.24
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
R V E+M G++ L R HD QF I QL+
Sbjct: 122 GRLAMIVTEYMENGSLDTFL----RTHDGQFTIMQLVG 155
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 30.2 bits (69), Expect = 0.46
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 184 VYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+Y V E++S G +L+ L R H QLL
Sbjct: 78 IYIVTEYISNGCLLNYL----RSHGKGLEPSQLLE 108
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 29.9 bits (68), Expect = 0.60
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 4/37 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
+ V E GG + L + + +
Sbjct: 81 AEALMLVMEMAGGGPLHKFL----VGKREEIPVSNVA 113
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 29.1 bits (65), Expect = 1.1
Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLLS 218
+ V+ + E + G + L + + + L+
Sbjct: 462 ENPVWIIMELCTLGELRSFL----QVRKFSLDLASLIL 495
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.2
Identities = 5/42 (11%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 113 KRSARTIIHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVE 154
K++ + + ++ + + S PA+ ++ +E
Sbjct: 19 KQA----LKKLQASLKLYA------DDSAPALAIKA---TME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.4
Identities = 33/187 (17%), Positives = 50/187 (26%), Gaps = 90/187 (48%)
Query: 17 TVSVAVLPQPKDIEVHLDEKDLKVET---KRATGAGGQHVNTTDSAVRMTHIPTGISV-E 72
+ A +DLK + AT AG H S+ E
Sbjct: 1738 LMEKAAF------------EDLKSKGLIPADATFAG--------------H-----SLGE 1766
Query: 73 -SQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKR--SARTIIHRTESP--- 126
+ ALA L ++ E +V +V R + + + R E
Sbjct: 1767 YA------------ALASLADVM---SIES-----LVEVVFYRGMTMQVAVPRDELGRSN 1806
Query: 127 --IIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQH---VNTTDSADRITDHRIQ 181
+IA P A ++ L+ +R G VN
Sbjct: 1807 YGMIAIN------PGRV-AASFSQEALQYVVERVGKRTGWLVEIVN-------------- 1845
Query: 182 RTVYNVA 188
YNV
Sbjct: 1846 ---YNVE 1849
Score = 28.9 bits (64), Expect = 1.7
Identities = 34/209 (16%), Positives = 58/209 (27%), Gaps = 56/209 (26%)
Query: 21 AVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVR-MTHIPTGISVESQEDRSQ 79
+LP+P + DE E + + ++ + + Q
Sbjct: 39 KILPEPTEGFAADDEPTTPAE----------------LVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 80 IKNRANALAKLKRLIYEIQFEE---QEN---RWVVRLVTKRSARTIIHRTESPIIAFREP 133
+ L + E FE + N +L+ T + +T+ I +
Sbjct: 83 V---------LNLCLTE--FENCYLEGNDIHALAAKLLQ--ENDTTLVKTKELIKNYITA 129
Query: 134 CTTLPSSCPAVHLEEKDL--KVETKRATGA---GGQHVNTTDSADRITDHRIQRTVYN-- 186
P L V A GGQ NT D + + R +Y
Sbjct: 130 RIMAKR--PFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDYFEEL------RDLYQTY 180
Query: 187 ---VAEFM-SGGAMLHELISDIRQHDYQF 211
V + + L ELI + F
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVF 209
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 27.4 bits (60), Expect = 3.7
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 46 TGAGGQHVNTTDSAVRMTHIPTGISVE--SQEDRSQIKNRANALAKLK-RLIYEIQFEEQ 102
+GA H + V + P G+ + ++ + + YE+
Sbjct: 105 SGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAG 164
Query: 103 ENRWVVRLVTKRSART 118
+ V+ V RT
Sbjct: 165 QGAGSVQRVEILEGRT 180
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 27.2 bits (61), Expect = 3.9
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 181 QRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
++ +Y V E + GG L L R + R+ LL
Sbjct: 184 KQPIYIVMELVQGGDFLTFL----RTEGARLRVKTLL 216
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 25.6 bits (56), Expect = 8.5
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 38/130 (29%)
Query: 95 YEIQFEEQE---------NRWVVRLVTKRSARTIIHRTESPIIAFREPCTTL-------- 137
E EE + W V ++ T++ + L
Sbjct: 9 AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLELVFHLPVNY 68
Query: 138 PSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHRIQRTVYNVAEFMSGGAML 197
PS P + + + L ++ + AE + M+
Sbjct: 69 PSCLPGISINSEQLTRAQCV---------------------TVKEKLLEQAESLLSEPMV 107
Query: 198 HELISDIRQH 207
HEL+ I+Q+
Sbjct: 108 HELVLWIQQN 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.362
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,110,369
Number of extensions: 175238
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 39
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)