RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1690
         (218 letters)



>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 90.1 bits (223), Expect = 6e-22
 Identities = 60/202 (29%), Positives = 88/202 (43%), Gaps = 46/202 (22%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQ-PKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
           + R    +  GR HTS  S  V P+   DI++ ++  DL+++  RA+GAGGQHVN T+SA
Sbjct: 198 LVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 257

Query: 60  VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTI 119
           VR+THIPTGI  + Q DRSQ KN+  A+ ++K  +YE++ +++                 
Sbjct: 258 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKN---------------- 301

Query: 120 IHRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNTTDSADRITDHR 179
                                       EK    + K   G G Q  +      RI D R
Sbjct: 302 ---------------------------AEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLR 334

Query: 180 IQRTVYNVAEFMSGGAMLHELI 201
                 N    + G   L + I
Sbjct: 335 TGVETRNTQAVLDGS--LDQFI 354


>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
           {Thermotoga maritima [TaxId: 2336]}
          Length = 333

 Score = 75.9 bits (186), Expect = 6e-17
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 46/218 (21%)

Query: 1   VQRVPKTEKSGRLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAV 60
           VQRVP TE  GR+HTST +VAVLP+ ++ ++ +  +DLK+ET RA+G GGQ+VN T+SAV
Sbjct: 161 VQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAV 220

Query: 61  RMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQENRWVVRLVTKRSARTII 120
           R+TH+PTGI V  Q +RSQ +N+        R++    ++ Q+ +               
Sbjct: 221 RITHLPTGIVVSCQNERSQYQNKQ----TALRILRARLYQLQKEQ--------------- 261

Query: 121 HRTESPIIAFREPCTTLPSSCPAVHLEEKDLKVETKRATGAGGQHVNT-TDSADRITDHR 179
                                      E   K +++  TG   + + T     +R+TDHR
Sbjct: 262 ------------------------KEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHR 297

Query: 180 IQRTVYNVAEFMSGGAMLHELISDIRQHDYQFRIDQLL 217
           I  T Y + E + G   L E+IS + +HD +  ++++L
Sbjct: 298 INYTSYRLQEILDGD--LDEIISKLIEHDIENNLEEVL 333


>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 112

 Score = 68.1 bits (166), Expect = 1e-15
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 25/98 (25%)

Query: 24  PQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHI------------------ 65
              K    ++    L +   R++G GGQ+VN  +S   +                     
Sbjct: 8   EHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALT 67

Query: 66  -------PTGISVESQEDRSQIKNRANALAKLKRLIYE 96
                     + + S+  R Q +N A  L K++ +I E
Sbjct: 68  HKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105



 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 144 VHLEEKDLKVETKRATGAGGQHVNTTDSADRIT 176
            ++    L +   R++G GGQ+VN  +S   + 
Sbjct: 15  SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVR 47


>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
           {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 63.2 bits (153), Expect = 2e-12
 Identities = 46/105 (43%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 1   VQRVPKTEKSG-RLHTSTVSVAVLPQPKDIEVHLDEKDLKVETKRATGAGGQHVNTTDSA 59
           VQRVP TE  G    ++     +   P      ++  DL+++T R++GAGGQHVNTTDSA
Sbjct: 174 VQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSA 233

Query: 60  VRMTHIPTGISVESQEDRSQIKNRANALAKLKRLIYEIQFEEQEN 104
           +R+TH+PTGI VE Q++RSQ KN+A AL+ L   I+  +  +++ 
Sbjct: 234 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQ 278



 Score = 32.0 bits (72), Expect = 0.040
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 173 DRITDHRIQRTVYNVAEFMSGGAMLHELISDIRQHD 208
            R+TDHRI  T+Y + E M G   L  LI  I Q  
Sbjct: 305 GRVTDHRINLTLYRLDEVMEGK--LDMLIEPIIQEH 338


>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 118

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 13/66 (19%), Positives = 25/66 (37%)

Query: 27  KDIEVHLDEKDLKVETKRATGAGGQHVNTTDSAVRMTHIPTGISVESQEDRSQIKNRANA 86
           K + V  +EK L +   R      +  + +           G+ VE+++ R +I N   A
Sbjct: 40  KKVRVMSNEKTLGLIASRIEEIKSELGDVSIELGETVDTMGGVIVETEDGRIRIDNTFEA 99

Query: 87  LAKLKR 92
             +   
Sbjct: 100 RMERFE 105


>d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli
          [TaxId: 562]}
          Length = 343

 Score = 26.5 bits (57), Expect = 2.6
 Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)

Query: 23 LPQPKDIEVHLDEKDLKVETKRATGAGG 50
          + +P D  +HL + D+         +  
Sbjct: 6  IRRPDDWHLHLRDGDMLKTV-VPYTSEI 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.129    0.362 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 732,252
Number of extensions: 30260
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 16
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)