BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16902
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
P+ V W+ NG L SS+ T G ++L++L DSG Y TN G A A
Sbjct: 36 PTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYAT 95
Query: 80 LSVQG 84
L V G
Sbjct: 96 LDVTG 100
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + +IE D S +V W+ R L S + T++ G L + I D G Y +V
Sbjct: 19 VKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKV 77
Query: 68 TNNSGSAESTALLSVQGRRE 87
N+ G S A L V+G RE
Sbjct: 78 VNDYGEDSSYAELFVKGVRE 97
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 9 HFEARI-EPV-------GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDS 60
H EA I EP+ G P +R+ W+ L ++ FK SL + + D
Sbjct: 14 HVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDV 73
Query: 61 GEYTVRVTNNSGSAESTALLSVQGRR 86
GEYT + N+ G+ S+A+L ++ R+
Sbjct: 74 GEYTCKAENSVGAVASSAVLVIKERK 99
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ FE RI G ++V W+ +G L + T+F +L +L G+Y
Sbjct: 119 VAFECRIN--GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSA 176
Query: 68 TNNSGSAESTALLSV 82
+N G+A S+A L++
Sbjct: 177 SNPLGTASSSAKLTL 191
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q +E +I G P ++V W+ + + SS+ +F L++ ++ + DSG+Y
Sbjct: 305 QDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 64 TVRVTNNSGSAESTALLSVQ 83
T N +GSA S+ L V+
Sbjct: 363 TCEAHNAAGSASSSTSLKVK 382
Score = 32.3 bits (72), Expect = 0.065, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+H E ++ G P +V W + R L + + + S+ +L++ D GEY +
Sbjct: 402 VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 459
Query: 68 TNNSGS 73
+N+ GS
Sbjct: 460 SNDVGS 465
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G +++ W + R + T +L +L + D+G+YT +N +G +
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Query: 78 ALLSVQ 83
A L VQ
Sbjct: 283 AQLGVQ 288
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 7 KIHFEARIEPVGDPSMRVDWFIN-GRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65
++ +A IE G + V WF + G + S ++ +L ++G+YT
Sbjct: 494 EVQLQATIE--GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTC 551
Query: 66 RVTNNSGSAESTALLSV 82
++ N +G+ E A LSV
Sbjct: 552 QIKNEAGTQECFATLSV 568
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRV 67
FEA I G P V WF +G+ + S+ F G L + ++ +SG Y+++
Sbjct: 25 FEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82
Query: 68 TNNSGSAESTALLSVQG 84
TN SG A STA L V+
Sbjct: 83 TNGSGQATSTAELLVKA 99
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q ++ + R+ G P+ V ++ +G + +S + + SL + DSG Y
Sbjct: 117 QGSQVRLQVRV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 64 TVRVTNNSGSAESTALLSVQGRREGE 89
+V TN+ G A STA L VQG E
Sbjct: 175 SVNATNSVGRATSTAELLVQGETREE 200
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRV 67
FEA I G P V WF +G+ + S+ F G L + ++ +SG Y+++
Sbjct: 25 FEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82
Query: 68 TNNSGSAESTALLSVQG 84
TN SG A STA L V+
Sbjct: 83 TNGSGQATSTAELLVKA 99
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q ++ + R+ G P+ V ++ +G + +S + + SL + DSG Y
Sbjct: 117 QGSQVRLQVRV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTY 174
Query: 64 TVRVTNNSGSAESTALLSVQ 83
+V TN+ G A STA L VQ
Sbjct: 175 SVNATNSVGRATSTAELLVQ 194
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 18 GDPSMRVDWFINGRPL-PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P V W N +P+ P R + G L +L+ D+G YT + N G+ +
Sbjct: 31 GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
Query: 77 TALLSVQG 84
A L V+G
Sbjct: 91 EARLEVRG 98
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPL-PASSRATTTFKF-GFISLDLLSIVLHDSGEYTV 65
+ F R+ G+P ++ WF +G+ + P S T G SL + L D G YT+
Sbjct: 26 VTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
Query: 66 RVTNNSGSAESTALLSVQGRREG 88
N G T L VQ G
Sbjct: 84 MAANPQGRISCTGRLMVQAVNSG 106
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPL-PASSRATTTFKF-GFISLDLLSIVLHDSGEYTV 65
+ F R+ G+P ++ WF +G+ + P S T G SL + L D G YT+
Sbjct: 25 VTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 82
Query: 66 RVTNNSGSAESTALLSVQ 83
N G T L VQ
Sbjct: 83 MAANPQGRVSCTGRLMVQ 100
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P + WF NG+ + + + K L + +I+ D G Y R TN +G E
Sbjct: 30 GSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 87
Query: 78 ALLSV 82
A L V
Sbjct: 88 AFLQV 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 18 GDPSMRVDWFINGRPLPASSR---ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G+P V W G+ L S+R TT +K F ++ S+ D G Y+V V N+ G
Sbjct: 40 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF---EISSVQASDEGNYSVVVENSEGKQ 96
Query: 75 ESTALLSVQ 83
E+ L++Q
Sbjct: 97 EAEFTLTIQ 105
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 18 GDPSMRVDWFINGRPLPASSR---ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G+P V W G+ L S+R TT +K F ++ S+ D G Y+V V N+ G
Sbjct: 34 GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF---EISSVQASDEGNYSVVVENSEGKQ 90
Query: 75 ESTALLSVQ 83
E+ L++Q
Sbjct: 91 EAEFTLTIQ 99
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P + WF NG+ + + + K L + +I+ D G Y R TN +G E
Sbjct: 124 GSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 181
Query: 78 ALLSV 82
A L V
Sbjct: 182 AFLQV 186
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P R+ W +NG+P+ A +T + G L + + D G YT N G +
Sbjct: 37 GTPVPRITWLLNGQPI---QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCS 93
Query: 78 ALLSVQ 83
A ++V
Sbjct: 94 AWVTVH 99
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSG 61
P + F R G+P+ + W NGR R + SL + S+V D G
Sbjct: 28 PAANTVRF--RCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 85
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
YT V N GS T L V R
Sbjct: 86 NYTCVVENKFGSIRQTYTLDVLER 109
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%)
Query: 48 ISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRREGE 89
+ L L ++ D GEY R TN G AE LSV G R E
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAE 223
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSG 61
P + F R G+P+ + W NGR R + SL + S+V D G
Sbjct: 136 PAANTVRF--RCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRG 193
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
YT V N GS T L V R
Sbjct: 194 NYTCVVENKFGSIRQTYTLDVLER 217
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 20 PSMRVDWFI-NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
P V W + NG L +SR +L+ ++L D+G YT VTN +G++ ++A
Sbjct: 378 PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASA 437
Query: 79 LLSV 82
L+V
Sbjct: 438 YLNV 441
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P + WF NG+ + + + K L + +I+ D G Y R TN +G E
Sbjct: 220 GSPEPAISWFRNGKLIEENEK--YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277
Query: 78 ALLSV 82
A L V
Sbjct: 278 AFLQV 282
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P V W +G+PL + +R + L +VL DSG Y N G+ ++
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Query: 78 ALLSVQG 84
A L+VQ
Sbjct: 376 AELTVQA 382
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-KFGFISLDLLSIVLHDSGE 62
Q HF R+ VG P +W+ NG + S R + + L + + DS
Sbjct: 19 QGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 76
Query: 63 YTVRVTNNSGSAESTALLSVQGR 85
V+ N +G S A L VQ +
Sbjct: 77 IMVKAINIAGETSSHAFLLVQAK 99
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human
Leucine- Rich Repeat-Containing Protein 4
Length = 103
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFI-NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ R + R P+ V W + NG L +SR +L+ ++L D+G
Sbjct: 21 EGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGV 76
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
YT VTN +G++ ++A L+V
Sbjct: 77 YTCMVTNVAGNSNASAYLNVS 97
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
V W + R L S + + L + + D GEYTVR N+ G+ E L+V
Sbjct: 408 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSG 61
P + + F+ +P++R W NG+ R ++ S+ + S+V D G
Sbjct: 29 PAAKTVKFKCPSSGTPNPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
YT V N GS T L V R
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVER 110
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G P V W NG PL + +R L + L DSG Y N G+ +
Sbjct: 318 AGKPRPTVRWLRNGEPLASQNRVEVLAG----DLRFSKLSLEDSGMYQCVAENKHGTIYA 373
Query: 77 TALLSVQG 84
+A L+VQ
Sbjct: 374 SAELAVQA 381
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
V W + R L S + + L + + D GEYTVR N+ G+ E L+V
Sbjct: 514 VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 33.1 bits (74), Expect = 0.042, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q +E +I G P ++V W+ + + SS+ +F L++ ++ + DSG+Y
Sbjct: 113 QDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 64 TVRVTNNSGSAESTALLSVQ 83
T N +GSA S+ L V+
Sbjct: 171 TCEAHNAAGSASSSTSLKVK 190
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+H E ++ G P +V W + R L + + + S+ +L++ D GEY +
Sbjct: 210 VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 68 TNNSGS 73
+N+ GS
Sbjct: 268 SNDVGS 273
Score = 30.0 bits (66), Expect = 0.33, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G +++ W + R + T +L +L + D+G+YT +N +G +
Sbjct: 31 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 90
Query: 78 ALLSVQG 84
A L VQ
Sbjct: 91 AQLGVQA 97
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 33.1 bits (74), Expect = 0.043, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q +E +I G P ++V W+ + + SS+ +F L++ ++ + DSG+Y
Sbjct: 113 QDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 64 TVRVTNNSGSAESTALLSVQ 83
T N +GSA S+ L V+
Sbjct: 171 TCEAHNAAGSASSSTSLKVK 190
Score = 32.3 bits (72), Expect = 0.062, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+H E ++ G P +V W + R L + + + S+ +L++ D GEY +
Sbjct: 210 VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 68 TNNSGS 73
+N+ GS
Sbjct: 268 SNDVGS 273
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G +++ W + R + T +L +L + D+G+YT +N +G +
Sbjct: 31 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 90
Query: 78 ALLSVQ 83
A L VQ
Sbjct: 91 AQLGVQ 96
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSG 61
P + + F+ P++R W NG+ R ++ S+ + S+V D G
Sbjct: 30 PAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 87
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
YT V N GS T L V R
Sbjct: 88 NYTCIVENEYGSINHTYQLDVVER 111
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSG 61
P + + F+ P++R W NG+ R ++ S+ + S+V D G
Sbjct: 29 PAAKTVKFKCPSSGTPQPTLR--WLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 86
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
YT V N GS T L V R
Sbjct: 87 NYTCIVENEYGSINHTYQLDVVER 110
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
+L+ ++ + D+G+YT VTN++G+ ++A L+V
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 32.7 bits (73), Expect = 0.051, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+G P + W+ NG PL ++ T K G + L ++ + D+G YTV +TN +
Sbjct: 355 LGYPPPEIKWYKNGIPLESNH----TIKAGHV-LTIMEVSERDTGNYTVILTNPISKEKQ 409
Query: 77 TALLSV 82
+ ++S+
Sbjct: 410 SHVVSL 415
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P ++ WF + L S K G +L + + D G YT + + G A+
Sbjct: 692 GNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 78 ALLSVQGRRE 87
A ++G +E
Sbjct: 750 AFFIIEGAQE 759
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 32.7 bits (73), Expect = 0.052, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSA 74
GDP V W N + L + F+ G + +++ +S DSG+Y + V N GS
Sbjct: 248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA--DSGKYGLVVKNKYGSE 305
Query: 75 ESTALLSV 82
S +SV
Sbjct: 306 TSDFTVSV 313
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 22 MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81
++V+W NG + S R T I L + +D G+Y + + + + T LS
Sbjct: 138 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 197
Query: 82 VQGRREG 88
Q E
Sbjct: 198 GQAYDEA 204
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+G P + W+ NG PL ++ T K G + L ++ + D+G YTV +TN +
Sbjct: 225 LGYPPPEIKWYKNGIPLESNH----TIKAGHV-LTIMEVSERDTGNYTVILTNPISKEKQ 279
Query: 77 TALLSV 82
+ ++S+
Sbjct: 280 SHVVSL 285
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSA 74
GDP V W N + L + F+ G + +++ +S DSG+Y + V N GS
Sbjct: 143 GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTA--DSGKYGLVVKNKYGSE 200
Query: 75 ESTALLSV 82
S +SV
Sbjct: 201 TSDFTVSV 208
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
I FE + G P V+W NG + S G +L +L +V D G Y
Sbjct: 330 IEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIV---GGSNLRILGVVKSDEGFYQCVA 384
Query: 68 TNNSGSAESTALLSV 82
N +G+A+S+A L V
Sbjct: 385 ENEAGNAQSSAQLIV 399
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 77 TALLSV 82
T L V
Sbjct: 94 TYHLDV 99
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 39 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 98
Query: 77 TALLSV 82
T L V
Sbjct: 99 TYHLDV 104
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 105 TYHLDVVER 113
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 50 LDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRREG 88
L L ++ D+GEY +V+N G A +A L+V +++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 38 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 97
Query: 77 TALLSV 82
T L V
Sbjct: 98 TYHLDV 103
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 35 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 95 TYHLDVVER 103
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 45 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 105 TYHLDVVER 113
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 50 LDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRREG 88
L L ++ D+GEY +V+N G A +A L+V +++
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 97 TYHLDVVER 105
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 14 IEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
++ G+P W +G+ + + + G L++ DSG YT V N++GS
Sbjct: 28 VKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGS 87
Query: 74 AESTALLSVQ 83
S+ L+++
Sbjct: 88 VSSSCKLTIK 97
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 36 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 96 TYHLDVVER 104
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 97 TYHLDVVER 105
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 37 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 97 TYHLDVVER 105
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 18 GDPSMRVDWFINGRPL-PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G P+ + W ++G+P+ P S+ + G SL + + D+G YT TN +G
Sbjct: 35 GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSF 94
Query: 77 TALLSVQGRREG 88
+ L V + G
Sbjct: 95 SLELVVAAKESG 106
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 13 RIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
+ + GDP + W G P T + G +L + ++ + D+G YT T++SG
Sbjct: 29 KCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSG 86
Query: 73 SAESTALLSV 82
+A+L V
Sbjct: 87 ETSWSAVLDV 96
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQG 84
+L+ ++ + D+G YT V+N+ G+ ++A L+V G
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTG 433
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 50 LDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRREG 88
L L ++ D+GEY +V+N G A +A L+V +++
Sbjct: 186 LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 224
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P W NG+ R + SL S+V D G YT V N GS
Sbjct: 44 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 103
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 104 TYHLDVVER 112
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASS-RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G P+ V W++NGR + + + G SL + D+G Y N +G A
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATF 90
Query: 77 TALLSVQGR 85
T L V +
Sbjct: 91 TVQLDVLAK 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P W NG+ R + SL S+V D G YT V N GS
Sbjct: 37 GNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYTCVVENEYGSINH 96
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 97 TYHLDVVER 105
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
VG P + W+ G+ L S + + +L +++ D G YT TN G E+
Sbjct: 32 VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Query: 77 TALLSVQG 84
++ L +Q
Sbjct: 92 SSKLLLQA 99
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 369 GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 78 ALLSVQGR 85
A L + GR
Sbjct: 419 AELKLGGR 426
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFIS--LDLLSIVLHDSGEYTVRVTNNSGS 73
P GD + +DW ++G+ + + TT + G L + ++ +G +T N +G
Sbjct: 644 PGGDLPLNIDWTLDGQAI-SEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702
Query: 74 AESTALLSV 82
+ T L+V
Sbjct: 703 QQFTTPLNV 711
>pdb|2PTT|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTU|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|C Chain C, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|D Chain D, Structure Of Nk Cell Receptor 2b4 (Cd244)
Length = 112
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 24 VDWFINGRPLPASSRATTT----FKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
++W+ +G P+ S + + F +G +L + S L DSG Y + +TN G
Sbjct: 50 LNWYNDG---PSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGG 99
>pdb|1Z2K|A Chain A, Nmr Structure Of The D1 Domain Of The Natural Killer
Cell Receptor, 2b4
Length = 109
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 24 VDWFINGRPLPASSRATTT----FKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
++W+ +G P+ S + + F +G +L + S L DSG Y + +TN G
Sbjct: 47 LNWYNDG---PSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGG 96
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG----FISLDLLSIVLHDSGEYTVRVTNNSGS 73
G P ++WF +G P+ + + + +F F + D GEY N G
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Query: 74 AES 76
A S
Sbjct: 95 AVS 97
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG----FISLDLLSIVLHDSGEYTVRVTNNSGS 73
G P ++WF +G P+ + + + +F F + D GEY N G
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Query: 74 AES 76
A S
Sbjct: 95 AVS 97
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P ++ WF + L S K G +L + + D G YT + + G A+
Sbjct: 36 GNPPPQIMWFKDNETLVEDS--GIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93
Query: 78 ALLSVQGRRE 87
A ++G +E
Sbjct: 94 AFFIIEGAQE 103
>pdb|2DKU|A Chain A, Solution Structure Of The Third Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 103
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
P+ V W L AS + + + + L + ++ DS YT + G A+S A
Sbjct: 35 PAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQ 90
Query: 80 LSVQGRREG 88
L VQGRR G
Sbjct: 91 LLVQGRRSG 99
>pdb|2YXM|A Chain A, Crystal Structure Of I-Set Domain Of Human Myosin
Binding Proteinc
pdb|2YUV|A Chain A, Solution Structure Of 2nd Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ DP + V W+ NG+ + S++ K L + + + D EY V + S E
Sbjct: 32 LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTAGDEKCSTE 90
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 18 GDPSMRVDWFING-RPLPASSRATTTFKFGFISLDLLS-------IVLHDSGEYTVRVTN 69
G P WF +G L A ++ T F ++D S + DSGEY + N
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 190
Query: 70 NSGSA 74
G+A
Sbjct: 191 GYGTA 195
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFK---------FGFISLDLLSIVLHDSGEYTVRVT 68
G P WF +G +P + ++T F G + D LS D+GEY+
Sbjct: 134 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS--ASDTGEYSCEAR 191
Query: 69 NNSGS 73
N G+
Sbjct: 192 NGYGT 196
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 44 KFGFISLDLLSI-VLHDSGEYTVRVTNNSGSAESTALLSVQ 83
K + L+++++ + D GEY TN+ GSA + +L V+
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P W NG PL R + +L++ + L D+G Y N G S+
Sbjct: 321 GRPKPTYRWLKNGDPLLTRDR----IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Query: 78 ALLSV 82
A LSV
Sbjct: 377 AELSV 381
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P W NG PL R + +L++ + L D+G Y N G S+
Sbjct: 320 GRPKPTYRWLKNGDPLLTRDR----IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS 375
Query: 78 ALLSV 82
A LSV
Sbjct: 376 AELSV 380
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 26 WFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
W++NG+ LP S R G +L L ++ +D+ Y + N+ + S
Sbjct: 500 WWVNGQSLPVSPR--LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRS 548
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
+P + WF+NG TF+ L + +I +++SG YT + N+ T
Sbjct: 230 NPPAQYSWFVNG-----------TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTT 278
Query: 79 LLSV 82
+ ++
Sbjct: 279 VTTI 282
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 336 GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEAS 385
Query: 78 ALLSV 82
A L +
Sbjct: 386 AELKL 390
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 339 GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEAS 388
Query: 78 ALLSV 82
A L +
Sbjct: 389 AELKL 393
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 333 GNPIKTVSWMKDGKAIGHSESV----------LRIESVKKEDKGMYQCFVRNDRESAEAS 382
Query: 78 ALLSV 82
A L +
Sbjct: 383 AELKL 387
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G+P+ V W GR + + + + +L ++ + D G YT+ + N GS
Sbjct: 33 GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 92
Query: 76 STALLSVQ 83
+T + ++
Sbjct: 93 ATVNIHIR 100
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G+P+ V W GR + + + + +L ++ + D G YT+ + N GS
Sbjct: 31 GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 90
Query: 76 STALLSVQ 83
+T + ++
Sbjct: 91 ATVNIHIR 98
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 76
>pdb|2WBJ|B Chain B, Tcr Complex
pdb|2WBJ|F Chain F, Tcr Complex
Length = 200
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 21 SMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
S+ V WF+NG+ A +T + G F +L +L V YT +V + S T
Sbjct: 126 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS----VT 181
Query: 78 ALLSVQGRREGE 89
+ L+V+ R E
Sbjct: 182 SPLTVEWRARSE 193
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 34 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 73
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 76
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 76
>pdb|1FCG|A Chain A, Ectodomain Of Human Fc Gamma Receptor, Fcgriia
Length = 174
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 40 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 79
>pdb|1BX2|B Chain B, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
pdb|1BX2|E Chain E, Crystal Structure Of Hla-Dr2 (Dra0101,Drb11501) Complexed
With A Peptide From Human Myelin Basic Protein
Length = 191
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 21 SMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
S+ V WF+NG+ A +T + G F +L +L V YT +V + S T
Sbjct: 124 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS----VT 179
Query: 78 ALLSVQGRREGE 89
+ L+V+ R E
Sbjct: 180 SPLTVEWRARSE 191
>pdb|1YMM|B Chain B, TcrHLA-Dr2bMBP-Peptide Complex
Length = 198
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 21 SMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
S+ V WF+NG+ A +T + G F +L +L V YT +V + S T
Sbjct: 126 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS----VT 181
Query: 78 ALLSVQGRREGE 89
+ L+V+ R E
Sbjct: 182 SPLTVEWRARSE 193
>pdb|3RY4|A Chain A, 1.5 Angstrom Resolution Structure Of Glycosylated
Fcgammariia (Low- Responder Polymorphism)
Length = 170
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 76
>pdb|2FCB|A Chain A, Human Fc Gamma Receptor Iib Ectodomain (Cd32)
Length = 173
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+ WF NG +P ++ + FK +DSGEYT + S S
Sbjct: 37 IQWFHNGNLIPTHTQPSYRFKANN----------NDSGEYTCQTGQTSLS 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,492,692
Number of Sequences: 62578
Number of extensions: 83071
Number of successful extensions: 317
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 114
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)