Query psy16902
Match_columns 90
No_of_seqs 106 out of 1535
Neff 12.4
Searched_HMMs 46136
Date Fri Aug 16 16:38:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.9 2E-19 4.3E-24 82.2 12.2 83 3-87 13-95 (98)
2 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 5.2E-18 1.1E-22 75.8 11.1 78 3-82 8-86 (86)
3 cd05737 Ig_Myomesin_like_C C-t 99.8 5.8E-18 1.3E-22 76.6 11.0 78 3-82 14-92 (92)
4 cd05748 Ig_Titin_like Immunogl 99.8 1.9E-17 4.2E-22 72.1 11.2 73 8-82 2-74 (74)
5 cd05745 Ig3_Peroxidasin Third 99.8 6.5E-18 1.4E-22 73.6 8.8 74 4-82 1-74 (74)
6 cd05852 Ig5_Contactin-1 Fifth 99.8 9.4E-18 2E-22 72.9 9.1 73 5-82 1-73 (73)
7 cd05735 Ig8_DSCAM Eight immuno 99.8 1E-16 2.2E-21 72.0 12.1 81 5-87 1-86 (88)
8 cd05747 Ig5_Titin_like M5, fif 99.8 8.7E-17 1.9E-21 72.7 11.5 76 3-80 16-91 (92)
9 cd05743 Ig_Perlecan_D2_like Im 99.8 7.4E-17 1.6E-21 70.9 10.5 75 5-81 1-75 (78)
10 cd05892 Ig_Myotilin_C C-termin 99.8 5.7E-17 1.2E-21 70.7 10.0 73 8-82 1-75 (75)
11 cd04975 Ig4_SCFR_like Fourth i 99.8 8.3E-17 1.8E-21 73.8 10.7 79 3-83 16-100 (101)
12 cd05867 Ig4_L1-CAM_like Fourth 99.8 1.7E-16 3.6E-21 69.5 11.2 74 5-82 1-75 (76)
13 cd05723 Ig4_Neogenin Fourth im 99.8 9.8E-17 2.1E-21 69.4 10.3 71 7-82 1-71 (71)
14 cd04972 Ig_TrkABC_d4 Fourth do 99.8 2.2E-16 4.8E-21 71.2 11.6 77 3-81 13-89 (90)
15 PF07679 I-set: Immunoglobulin 99.8 1.1E-16 2.3E-21 72.1 10.5 78 3-82 13-90 (90)
16 cd04969 Ig5_Contactin_like Fif 99.8 7.3E-17 1.6E-21 70.1 9.5 73 5-82 1-73 (73)
17 cd05868 Ig4_NrCAM Fourth immun 99.8 1.2E-16 2.7E-21 69.9 9.8 74 5-82 1-75 (76)
18 cd05854 Ig6_Contactin-2 Sixth 99.7 6.2E-16 1.3E-20 69.0 11.8 79 6-86 1-85 (85)
19 cd05744 Ig_Myotilin_C_like Imm 99.7 4.3E-16 9.4E-21 68.0 10.8 73 8-82 1-75 (75)
20 cd04978 Ig4_L1-NrCAM_like Four 99.7 2.1E-16 4.6E-21 69.1 9.9 75 5-82 1-75 (76)
21 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.4E-16 3E-21 73.1 9.6 79 3-83 16-100 (101)
22 cd05891 Ig_M-protein_C C-termi 99.7 4.2E-16 9.1E-21 70.5 11.1 78 3-82 14-92 (92)
23 cd05893 Ig_Palladin_C C-termin 99.7 2.6E-16 5.6E-21 68.7 9.9 73 8-82 1-75 (75)
24 cd05851 Ig3_Contactin-1 Third 99.7 1.4E-16 3E-21 71.5 9.1 74 3-82 14-87 (88)
25 cd05857 Ig2_FGFR Second immuno 99.7 7.4E-16 1.6E-20 68.7 11.4 79 2-82 6-85 (85)
26 cd05730 Ig3_NCAM-1_like Third 99.7 6.8E-16 1.5E-20 70.2 10.7 78 3-84 16-94 (95)
27 cd05728 Ig4_Contactin-2-like F 99.7 3.8E-16 8.1E-21 69.7 9.1 74 3-82 12-85 (85)
28 cd04970 Ig6_Contactin_like Six 99.7 1.3E-15 2.9E-20 67.9 10.7 79 6-86 1-85 (85)
29 cd05869 Ig5_NCAM-1 Fifth immun 99.7 1.1E-15 2.3E-20 69.8 10.5 76 5-82 17-97 (97)
30 cd05863 Ig2_VEGFR-3 Second imm 99.7 4.6E-16 9.9E-21 66.4 8.4 65 8-82 1-65 (67)
31 cd04971 Ig_TrKABC_d5 Fifth dom 99.7 2.1E-15 4.4E-20 66.7 10.3 71 10-82 3-80 (81)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.9E-15 4.2E-20 69.1 10.3 77 3-81 14-97 (98)
33 cd05853 Ig6_Contactin-4 Sixth 99.7 1.6E-15 3.4E-20 67.5 9.6 81 6-86 1-85 (85)
34 cd05736 Ig2_Follistatin_like S 99.7 2.3E-15 5E-20 65.9 10.1 73 9-83 2-74 (76)
35 cd05732 Ig5_NCAM-1_like Fifth 99.7 1.8E-15 3.9E-20 68.9 10.0 77 3-81 14-95 (96)
36 cd05726 Ig4_Robo Fhird immunog 99.7 1.6E-15 3.5E-20 68.3 9.7 76 5-85 1-84 (90)
37 cd05746 Ig4_Peroxidasin Fourth 99.7 1.1E-15 2.5E-20 65.7 8.5 68 8-80 1-68 (69)
38 cd05855 Ig_TrkB_d5 Fifth domai 99.7 2.6E-15 5.7E-20 65.9 9.7 70 10-81 3-77 (79)
39 cd04968 Ig3_Contactin_like Thi 99.7 1.5E-15 3.3E-20 68.1 9.0 74 3-82 14-87 (88)
40 cd05773 Ig8_hNephrin_like Eigh 99.7 9.6E-15 2.1E-19 67.9 11.8 82 4-87 22-109 (109)
41 cd05865 Ig1_NCAM-1 First immun 99.7 8E-15 1.7E-19 66.7 11.1 78 3-82 13-95 (96)
42 cd04976 Ig2_VEGFR Second immun 99.7 1.4E-15 3.1E-20 65.7 8.3 69 8-82 1-69 (71)
43 cd05876 Ig3_L1-CAM Third immun 99.7 1.6E-15 3.4E-20 65.6 8.1 70 8-82 1-70 (71)
44 cd05866 Ig1_NCAM-2 First immun 99.7 1.3E-14 2.8E-19 65.5 11.2 70 3-75 13-83 (92)
45 cd05760 Ig2_PTK7 Second immuno 99.7 5.9E-15 1.3E-19 64.7 9.7 69 8-80 1-70 (77)
46 cd05764 Ig_2 Subgroup of the i 99.7 7.3E-15 1.6E-19 63.9 9.9 72 5-81 1-73 (74)
47 cd05763 Ig_1 Subgroup of the i 99.7 3.5E-15 7.7E-20 65.1 8.8 71 8-82 1-74 (75)
48 cd05864 Ig2_VEGFR-2 Second imm 99.7 2.7E-15 5.8E-20 64.6 8.0 67 9-82 2-68 (70)
49 cd05848 Ig1_Contactin-5 First 99.7 1.6E-14 3.5E-19 65.6 10.9 69 4-76 18-87 (94)
50 cd05856 Ig2_FGFRL1-like Second 99.7 6.9E-15 1.5E-19 65.1 9.3 74 4-81 8-81 (82)
51 cd05750 Ig_Pro_neuregulin Immu 99.7 7.2E-15 1.6E-19 64.1 9.1 69 8-78 1-73 (75)
52 cd05739 Ig3_RPTP_IIa_LAR_like 99.7 1E-14 2.2E-19 62.7 9.4 68 5-80 1-68 (69)
53 cd05858 Ig3_FGFR-2 Third immun 99.7 1.3E-14 2.8E-19 65.4 10.0 76 5-82 1-89 (90)
54 cd05740 Ig_CEACAM_D4 Fourth im 99.6 3E-14 6.4E-19 64.3 10.7 74 3-82 16-90 (91)
55 cd05756 Ig1_IL1R_like First im 99.6 2.8E-15 6.1E-20 68.0 7.1 77 2-82 11-94 (94)
56 cd05725 Ig3_Robo Third immunog 99.6 8.6E-15 1.9E-19 62.9 8.2 69 8-82 1-69 (69)
57 cd04973 Ig1_FGFR First immunog 99.6 1.5E-14 3.2E-19 63.7 9.0 71 3-80 7-77 (79)
58 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1.9E-14 4.2E-19 62.6 8.9 70 8-82 1-73 (74)
59 cd04974 Ig3_FGFR Third immunog 99.6 2.3E-14 5.1E-19 64.6 9.2 76 5-82 1-89 (90)
60 cd07693 Ig1_Robo First immunog 99.6 8.8E-14 1.9E-18 63.6 11.0 78 3-82 14-99 (100)
61 cd05765 Ig_3 Subgroup of the i 99.6 3E-14 6.5E-19 62.9 9.1 76 5-82 1-81 (81)
62 cd05731 Ig3_L1-CAM_like Third 99.6 2E-14 4.4E-19 62.0 8.3 70 8-82 1-70 (71)
63 cd05733 Ig6_L1-CAM_like Sixth 99.6 2.3E-14 5.1E-19 62.8 8.1 65 8-76 1-71 (77)
64 cd05850 Ig1_Contactin-2 First 99.6 1.7E-13 3.7E-18 62.2 10.8 69 5-77 19-88 (94)
65 cd05874 Ig6_NrCAM Sixth immuno 99.6 5.8E-14 1.3E-18 61.6 8.6 66 8-77 1-72 (77)
66 cd05724 Ig2_Robo Second immuno 99.6 1.3E-13 2.8E-18 61.6 9.8 71 3-77 9-80 (86)
67 cd05742 Ig1_VEGFR_like First i 99.6 1.4E-13 3.1E-18 61.2 9.1 76 5-82 1-83 (84)
68 cd05861 Ig1_PDGFR-alphabeta Fr 99.6 3.5E-13 7.6E-18 60.0 10.1 77 5-83 1-83 (84)
69 cd05875 Ig6_hNeurofascin_like 99.6 2.5E-13 5.5E-18 59.5 9.3 66 8-77 1-72 (77)
70 cd07702 Ig2_VEGFR-1 Second imm 99.6 2.4E-13 5.3E-18 58.8 9.0 67 9-80 2-68 (72)
71 cd05758 Ig5_KIRREL3-like Fifth 99.6 7.5E-13 1.6E-17 60.5 11.1 76 3-80 14-97 (98)
72 cd05729 Ig2_FGFR_like Second i 99.6 9.7E-13 2.1E-17 58.5 10.9 77 3-81 7-84 (85)
73 cd05895 Ig_Pro_neuregulin-1 Im 99.5 5.9E-13 1.3E-17 58.2 9.4 70 8-78 1-74 (76)
74 cd04967 Ig1_Contactin First Ig 99.5 7.8E-13 1.7E-17 59.7 10.0 68 5-76 19-87 (91)
75 cd05849 Ig1_Contactin-1 First 99.5 4.1E-13 9E-18 60.8 9.0 67 5-77 19-87 (93)
76 cd05722 Ig1_Neogenin First imm 99.5 1.4E-12 3E-17 59.3 10.4 69 3-76 12-88 (95)
77 cd04977 Ig1_NCAM-1_like First 99.5 1.9E-12 4E-17 58.6 10.4 75 3-80 13-90 (92)
78 cd05749 Ig2_Tyro3_like Second 99.5 1E-12 2.2E-17 58.1 7.9 65 2-76 10-75 (81)
79 cd05734 Ig7_DSCAM Seventh immu 99.5 1.1E-12 2.4E-17 57.7 7.9 63 8-75 1-71 (79)
80 cd07701 Ig1_Necl-3 First (N-te 99.4 1.4E-11 3.1E-16 56.0 10.0 66 3-70 10-84 (95)
81 KOG3513|consensus 99.4 1.4E-12 3E-17 77.9 8.0 81 3-88 439-519 (1051)
82 cd05873 Ig_Sema4D_like Immunog 99.4 1.5E-11 3.3E-16 55.0 9.3 61 3-70 9-70 (87)
83 smart00409 IG Immunoglobulin. 99.4 9.5E-11 2.1E-15 51.6 11.9 78 3-82 7-85 (86)
84 smart00410 IG_like Immunoglobu 99.4 9.5E-11 2.1E-15 51.6 11.9 78 3-82 7-85 (86)
85 cd04979 Ig_Semaphorin_C Immuno 99.4 8.9E-12 1.9E-16 56.0 8.1 76 3-83 9-87 (89)
86 smart00408 IGc2 Immunoglobulin 99.4 1.4E-11 3E-16 51.5 7.9 63 4-72 1-63 (63)
87 KOG3513|consensus 99.4 1.2E-11 2.7E-16 74.1 10.0 76 4-85 345-423 (1051)
88 cd05757 Ig2_IL1R_like Second i 99.4 1.3E-11 2.9E-16 55.8 7.7 72 3-78 8-82 (92)
89 cd05882 Ig1_Necl-1 First (N-te 99.4 1.1E-10 2.3E-15 53.1 10.4 66 3-70 10-84 (95)
90 cd05898 Ig5_KIRREL3 Fifth immu 99.4 1.1E-10 2.4E-15 53.3 10.5 76 3-80 14-97 (98)
91 cd05754 Ig3_Perlecan_like Thir 99.4 2.5E-11 5.5E-16 54.1 8.3 71 3-80 14-84 (85)
92 cd05871 Ig_Semaphorin_classIII 99.4 3.8E-11 8.3E-16 54.2 8.3 75 3-84 9-90 (91)
93 KOG4194|consensus 99.3 1.3E-11 2.9E-16 70.8 7.5 81 4-88 626-709 (873)
94 cd05862 Ig1_VEGFR First immuno 99.3 9.2E-11 2E-15 52.4 8.8 77 5-83 1-85 (86)
95 cd05752 Ig1_FcgammaR_like Frst 99.3 3.4E-11 7.4E-16 52.9 6.7 55 3-70 13-68 (78)
96 KOG4221|consensus 99.3 7.1E-11 1.5E-15 71.7 9.7 83 2-88 249-331 (1381)
97 PF00047 ig: Immunoglobulin do 99.3 4.7E-11 1E-15 50.4 6.7 61 5-67 1-64 (64)
98 cd07690 Ig1_CD4 First immunogl 99.3 7.8E-11 1.7E-15 53.4 7.7 69 3-73 5-90 (94)
99 cd05860 Ig4_SCFR Fourth immuno 99.3 4.1E-10 8.8E-15 51.4 9.8 79 3-83 16-100 (101)
100 cd05753 Ig2_FcgammaR_like Seco 99.3 6E-11 1.3E-15 52.7 6.9 63 2-73 11-73 (83)
101 cd05727 Ig2_Contactin-2-like S 99.3 5.1E-11 1.1E-15 54.1 6.3 67 3-72 16-84 (96)
102 cd05717 Ig1_Necl-1-3_like Firs 99.2 1.6E-09 3.4E-14 49.2 10.2 67 3-71 10-85 (95)
103 PHA02826 IL-1 receptor-like pr 99.2 1.3E-09 2.7E-14 56.7 10.2 66 3-70 142-210 (227)
104 cd05872 Ig_Sema4B_like Immunog 99.2 1E-09 2.2E-14 48.9 7.8 73 3-82 9-82 (85)
105 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 8.5E-10 1.8E-14 50.6 7.4 78 2-81 12-103 (104)
106 cd05845 Ig2_L1-CAM_like Second 99.1 2.2E-10 4.8E-15 51.9 5.0 66 3-72 16-83 (95)
107 cd05900 Ig_Aggrecan Immunoglob 99.1 4.8E-09 1E-13 49.0 9.4 79 4-84 1-110 (112)
108 PF13895 Ig_2: Immunoglobulin 99.1 1.6E-09 3.5E-14 47.4 7.3 58 3-72 12-69 (80)
109 PHA02785 IL-beta-binding prote 99.1 2.3E-09 4.9E-14 58.5 9.1 78 2-84 38-118 (326)
110 cd05714 Ig_CSPGs_LP Immunoglob 99.0 4.2E-08 9.2E-13 45.4 10.6 79 4-84 1-104 (106)
111 cd05881 Ig1_Necl-2 First (N-te 99.0 4.5E-08 9.9E-13 44.5 10.7 66 3-70 10-84 (95)
112 cd05897 Ig2_IL1R2_like Second 99.0 1.1E-08 2.4E-13 46.5 8.1 70 3-73 8-80 (95)
113 cd05759 Ig2_KIRREL3-like Secon 99.0 3.1E-08 6.7E-13 43.8 9.5 63 8-72 2-70 (82)
114 cd05885 Ig2_Necl-4 Second immu 99.0 1.1E-08 2.4E-13 45.0 7.7 65 8-73 2-68 (80)
115 cd05877 Ig_LP_like Immunoglobu 99.0 5.3E-08 1.2E-12 45.0 9.8 79 4-84 1-104 (106)
116 cd00099 IgV Immunoglobulin var 99.0 1.8E-08 3.9E-13 46.4 8.1 69 2-72 3-91 (105)
117 cd05751 Ig1_LILRB1_like First 99.0 1.1E-08 2.4E-13 46.1 7.1 63 2-70 13-75 (91)
118 PHA02785 IL-beta-binding prote 99.0 5.1E-08 1.1E-12 53.3 10.8 68 4-73 234-317 (326)
119 PHA02826 IL-1 receptor-like pr 99.0 1.9E-08 4.2E-13 52.4 8.1 81 2-84 34-134 (227)
120 cd04983 IgV_TCR_alpha_like Imm 99.0 4.4E-08 9.5E-13 45.5 8.6 67 3-71 11-93 (109)
121 cd05878 Ig_Aggrecan_like Immun 98.9 1.5E-07 3.2E-12 44.0 9.9 79 4-84 1-108 (110)
122 cd05713 Ig_MOG_like Immunoglob 98.9 2E-07 4.4E-12 42.7 10.2 78 5-82 1-99 (100)
123 cd05879 Ig_P0 Immunoglobulin ( 98.9 2.6E-07 5.7E-12 43.5 10.2 69 4-72 12-104 (116)
124 cd05718 Ig1_PVR_like First imm 98.9 3.5E-07 7.7E-12 41.6 10.1 75 6-82 1-97 (98)
125 cd05899 IgV_TCR_beta Immunoglo 98.8 7.5E-08 1.6E-12 44.9 7.3 66 2-70 10-94 (110)
126 KOG4222|consensus 98.8 2.9E-08 6.2E-13 60.7 6.9 82 3-88 144-228 (1281)
127 cd07694 Ig2_CD4 Second immunog 98.8 4.2E-07 9E-12 40.5 8.9 75 3-83 12-86 (88)
128 cd05711 Ig_FcalphaRI Immunoglo 98.8 1.3E-07 2.9E-12 42.9 7.1 66 1-69 11-76 (94)
129 cd04982 IgV_TCR_gamma Immunogl 98.8 1.7E-07 3.8E-12 44.0 7.6 65 3-69 11-98 (116)
130 cd05774 Ig_CEACAM_D1 First imm 98.8 5.6E-07 1.2E-11 41.7 9.0 65 2-71 10-93 (105)
131 cd04980 IgV_L_kappa Immunoglob 98.8 2.6E-07 5.6E-12 42.8 7.9 66 3-70 13-93 (106)
132 cd04984 IgV_L_lambda Immunoglo 98.8 3.8E-07 8.3E-12 41.6 8.4 66 2-69 3-84 (98)
133 cd05902 Ig_Neurocan Immunoglob 98.8 8.6E-07 1.9E-11 41.4 9.4 80 5-84 2-108 (110)
134 cd05775 Ig_SLAM-CD84_like_N N- 98.7 4.8E-07 1E-11 41.3 8.0 69 3-73 2-86 (97)
135 cd05741 Ig_CEACAM_D1_like Firs 98.7 8.6E-07 1.9E-11 39.9 8.3 63 5-72 1-81 (92)
136 cd05888 Ig1_Nectin-4_like Frst 98.7 1.6E-06 3.5E-11 39.8 8.4 74 7-82 2-99 (100)
137 PHA03376 BARF1; Provisional 98.6 2.3E-06 4.9E-11 43.4 9.0 69 4-72 25-111 (221)
138 cd05901 Ig_Versican Immunoglob 98.6 3.4E-06 7.4E-11 39.8 10.5 39 46-84 77-115 (117)
139 cd05846 Ig1_MRC-OX-2_like Firs 98.6 2.2E-06 4.8E-11 39.1 8.1 76 5-82 1-96 (97)
140 PHA02987 Ig domain OX-2-like p 98.6 4.7E-06 1E-10 42.1 9.4 84 2-86 27-125 (189)
141 cd05755 Ig2_ICAM-1_like Second 98.6 2.1E-06 4.5E-11 39.5 7.6 70 1-72 12-86 (100)
142 PF13927 Ig_3: Immunoglobulin 98.6 2.7E-07 5.7E-12 39.7 4.4 58 7-69 17-75 (75)
143 KOG4194|consensus 98.5 6E-07 1.3E-11 52.6 6.4 77 3-83 719-796 (873)
144 cd05880 Ig_EVA1 Immunoglobulin 98.5 3.4E-06 7.3E-11 39.7 8.0 68 3-72 11-103 (115)
145 cd05761 Ig2_Necl-1-4_like Seco 98.5 5.2E-06 1.1E-10 36.8 8.3 64 8-72 2-69 (82)
146 cd05720 Ig_CD8_alpha Immunoglo 98.5 4.3E-06 9.3E-11 38.7 7.9 66 2-69 3-90 (104)
147 KOG4222|consensus 98.5 3.3E-07 7.2E-12 56.4 4.6 81 4-89 239-319 (1281)
148 cd05883 Ig2_Necl-2 Second immu 98.5 7.8E-06 1.7E-10 36.3 7.8 63 8-71 2-67 (82)
149 KOG4221|consensus 98.5 4.9E-06 1.1E-10 51.9 9.1 75 4-83 154-229 (1381)
150 cd00098 IgC Immunoglobulin Con 98.5 1.6E-06 3.4E-11 39.2 5.6 67 4-72 12-86 (95)
151 cd05887 Ig1_Nectin-3_like Firs 98.4 1.1E-05 2.4E-10 36.9 9.6 76 6-82 1-95 (96)
152 cd07705 Ig2_Necl-1 Second immu 98.4 9.6E-06 2.1E-10 36.0 8.8 62 8-71 2-69 (83)
153 cd05715 Ig_P0-like Immunoglobu 98.4 1.1E-05 2.3E-10 38.0 8.3 70 3-72 11-104 (116)
154 cd05886 Ig1_Nectin-1_like Firs 98.4 1.5E-05 3.2E-10 36.7 9.8 35 48-82 63-98 (99)
155 cd05884 Ig2_Necl-3 Second immu 98.4 1.8E-05 4E-10 35.2 8.3 63 8-71 2-69 (83)
156 cd07706 IgV_TCR_delta Immunogl 98.4 1.4E-05 3E-10 37.6 7.5 65 3-69 12-93 (116)
157 cd07700 IgV_CD8_beta Immunoglo 98.3 1.4E-05 3.1E-10 37.1 7.3 66 2-69 3-93 (107)
158 cd00096 Ig Immunoglobulin doma 98.3 1.4E-05 3.1E-10 33.2 8.0 62 8-71 1-66 (74)
159 cd05716 Ig_pIgR Immunoglobulin 98.3 5.9E-06 1.3E-10 37.7 6.0 67 3-70 5-86 (98)
160 cd05712 Ig_Siglec_N Immunoglob 98.3 2.4E-05 5.2E-10 37.0 7.9 66 3-70 12-102 (119)
161 cd05771 IgC_Tapasin_R Tapasin- 98.3 2.6E-06 5.6E-11 41.3 4.4 40 49-88 2-41 (139)
162 PF07686 V-set: Immunoglobulin 98.2 6.9E-05 1.5E-09 34.6 8.5 67 3-70 14-101 (114)
163 smart00406 IGv Immunoglobulin 98.1 7.3E-05 1.6E-09 32.5 7.1 58 7-66 1-80 (81)
164 cd04981 IgV_H Immunoglobulin ( 98.1 0.00011 2.4E-09 34.7 7.4 66 2-69 9-97 (117)
165 cd07698 IgC_MHC_I_alpha3 Class 98.1 0.00012 2.5E-09 33.2 7.3 65 5-71 14-83 (93)
166 PF08205 C2-set_2: CD80-like C 98.0 0.00014 3E-09 32.5 7.1 67 5-72 14-85 (89)
167 cd05766 IgC_MHC_II_beta Class 98.0 0.0002 4.4E-09 32.6 8.2 66 4-71 13-83 (94)
168 PHA02633 hypothetical protein; 98.0 0.00012 2.5E-09 30.6 5.4 38 49-86 19-56 (63)
169 cd05889 Ig1_DNAM-1_like First 97.9 0.00026 5.7E-09 32.4 9.6 73 6-79 1-92 (96)
170 cd05770 IgC_beta2m Class I maj 97.8 0.00041 9E-09 31.6 7.8 64 5-70 15-82 (93)
171 cd05767 IgC_MHC_II_alpha Class 97.8 0.00058 1.2E-08 31.1 6.8 61 5-70 15-83 (94)
172 cd05772 IgC_SIRP Signal-regula 97.8 0.00068 1.5E-08 31.9 9.8 65 4-71 20-92 (111)
173 cd07699 IgC_L Immunoglobulin C 97.7 0.00065 1.4E-08 31.3 6.2 66 4-71 16-89 (100)
174 cd07692 Ig_CD3_epsilon Immunog 97.6 0.00052 1.1E-08 29.1 4.6 52 3-70 5-56 (65)
175 PF07654 C1-set: Immunoglobuli 97.5 0.0014 2.9E-08 29.0 5.9 63 4-71 7-77 (83)
176 smart00407 IGc1 Immunoglobulin 97.4 0.0022 4.8E-08 27.8 8.2 61 8-70 2-70 (75)
177 cd05771 IgC_Tapasin_R Tapasin- 97.2 0.0061 1.3E-07 29.6 9.4 65 4-70 52-130 (139)
178 cd05768 IgC_CH4 CH4 domain (fo 97.2 0.005 1.1E-07 28.5 6.4 29 5-35 16-46 (102)
179 cd05719 Ig2_PVR_like Second im 97.2 0.005 1.1E-07 28.2 9.2 63 6-72 16-83 (95)
180 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0053 1.1E-07 28.1 8.8 71 6-78 16-89 (95)
181 cd07697 IgC_TCR_gamma T cell r 97.1 0.0067 1.4E-07 27.8 6.3 29 5-35 16-46 (96)
182 cd05847 IgC_CH2_IgE CH2 domain 96.9 0.0095 2.1E-07 27.2 7.7 65 5-71 14-86 (94)
183 PHA02982 hypothetical protein; 96.7 0.03 6.4E-07 29.5 6.8 66 5-71 39-123 (251)
184 cd07696 IgC_CH3 CH3 domain (th 96.5 0.025 5.4E-07 25.9 7.0 25 5-31 14-41 (96)
185 KOG1480|consensus 96.4 0.0017 3.8E-08 39.7 1.4 67 5-75 144-210 (909)
186 KOG3515|consensus 96.4 0.0091 2E-07 36.7 4.1 64 3-72 20-83 (741)
187 cd07689 Ig2_VCAM-1 Second immu 96.3 0.035 7.7E-07 25.7 6.9 66 3-70 13-85 (99)
188 cd04985 IgC_CH1 CH1 domain (fi 96.2 0.04 8.6E-07 25.2 6.6 27 4-32 15-43 (95)
189 cd05769 IgC_TCR_beta T cell re 96.1 0.054 1.2E-06 25.8 7.6 67 5-73 18-94 (115)
190 PF08204 V-set_CD47: CD47 immu 96.1 0.029 6.4E-07 27.2 4.3 78 4-82 26-119 (130)
191 cd07704 Ig2_Nectin-3-4_like Se 95.9 0.057 1.2E-06 24.9 5.8 67 3-71 14-84 (97)
192 PF07354 Sp38: Zona-pellucida- 95.8 0.039 8.4E-07 30.0 4.4 49 18-69 9-58 (271)
193 KOG4597|consensus 95.7 0.038 8.3E-07 32.5 4.4 78 4-83 210-292 (560)
194 cd07691 Ig_CD3_gamma_delta Imm 95.7 0.061 1.3E-06 23.2 5.6 49 5-69 6-54 (69)
195 cd05721 IgV_CTLA-4 Immunoglobu 95.6 0.096 2.1E-06 25.0 7.8 67 3-69 11-95 (115)
196 KOG3515|consensus 95.3 0.15 3.3E-06 31.8 6.1 68 3-70 110-185 (741)
197 cd04986 IgC_CH2 CH2 domain (se 95.3 0.12 2.6E-06 24.0 6.5 28 5-32 19-47 (99)
198 PHA03042 CD47-like protein; Pr 94.9 0.31 6.8E-06 26.8 7.5 66 4-78 30-100 (286)
199 PHA03052 Hypothetical protein; 93.1 0.34 7.5E-06 20.8 3.5 29 4-33 11-41 (69)
200 PHA02914 Immunoglobulin-like d 91.7 0.65 1.4E-05 27.2 4.2 74 2-75 276-373 (500)
201 PHA02865 MHC-like TNF binding 87.8 3.7 8.1E-05 23.7 5.8 21 7-29 216-238 (338)
202 PF05790 C2-set: Immunoglobuli 87.2 1.8 3.8E-05 19.3 7.1 33 50-82 45-78 (80)
203 PHA03189 UL14 tegument protein 82.6 7.1 0.00015 22.4 8.3 30 54-83 139-168 (348)
204 PF06328 Lep_receptor_Ig: Ig-l 78.9 4.9 0.00011 18.3 5.9 63 3-67 16-81 (89)
205 PF11465 Receptor_2B4: Natural 73.4 8.7 0.00019 18.4 8.4 28 48-75 71-98 (108)
206 COG5475 Uncharacterized small 67.9 8.5 0.00018 16.0 2.2 18 60-77 28-45 (60)
207 PHA03282 envelope glycoprotein 59.8 18 0.00039 22.2 3.0 22 49-70 334-355 (540)
208 PF06832 BiPBP_C: Penicillin-B 58.2 17 0.00037 16.2 6.4 53 9-75 33-85 (89)
209 KOG0613|consensus 57.7 3.6 7.8E-05 27.8 0.1 19 18-36 215-233 (1205)
210 PF03921 ICAM_N: Intercellular 56.7 20 0.00043 16.6 9.3 75 2-87 15-90 (91)
211 PHA03283 envelope glycoprotein 50.3 63 0.0014 20.4 6.4 38 47-84 133-170 (542)
212 cd05890 Ig2_Nectin-1_like Seco 45.7 35 0.00075 16.1 6.7 22 7-29 22-43 (98)
213 PF01688 Herpes_gI: Alphaherpe 43.6 49 0.0011 17.2 4.8 23 49-71 125-147 (161)
214 PF02440 Adeno_E3_CR1: Adenovi 40.7 34 0.00075 14.6 4.2 18 4-27 4-21 (63)
215 PF02480 Herpes_gE: Alphaherpe 39.7 17 0.00038 22.0 1.0 22 49-70 270-291 (439)
216 PF13220 DUF4028: Protein of u 37.9 36 0.00077 14.0 1.7 15 59-73 9-23 (65)
217 PHA03290 envelope glycoprotein 37.7 89 0.0019 18.5 5.1 22 49-70 130-151 (357)
218 PHA03286 envelope glycoprotein 34.8 1.2E+02 0.0025 19.0 5.1 36 48-83 127-163 (492)
219 PHA03271 envelope glycoprotein 28.3 1.2E+02 0.0025 18.8 2.9 31 3-34 258-290 (490)
220 PHA03291 envelope glycoprotein 28.1 1.4E+02 0.0031 18.0 4.9 34 49-82 130-163 (401)
221 PHA03289 envelope glycoprotein 27.1 1.4E+02 0.0031 17.7 4.9 24 49-72 123-146 (352)
222 PHA03292 envelope glycoprotein 24.9 1.7E+02 0.0038 17.8 4.8 24 48-71 128-151 (413)
223 PF11781 RRN7: RNA polymerase 24.6 44 0.00096 12.4 0.7 9 58-66 21-29 (36)
224 PF15096 G6B: G6B family 24.2 85 0.0018 16.9 1.8 25 56-83 82-106 (224)
225 KOG1026|consensus 23.2 85 0.0018 21.0 2.0 28 2-31 204-231 (774)
226 PF10461 Peptidase_S68: Peptid 23.0 49 0.0011 12.3 0.6 8 21-28 23-30 (35)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.86 E-value=2e-19 Score=82.17 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
..|+.+.|.|.+. |.|+|.+.|++++..+....++..........|.|..+...|.|.|.|.+.|..|...+...|.|
T Consensus 13 ~~G~~v~l~C~~~--G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V 90 (98)
T cd05762 13 RAGESVELFCKVT--GTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTV 90 (98)
T ss_pred ECCCEEEEEEEEc--ccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEE
Confidence 4699999999998 99999999999999987666666655555667999999999999999999999999999999999
Q ss_pred ecCCC
Q psy16902 83 QGRRE 87 (90)
Q Consensus 83 ~~~~~ 87 (90)
.+.|.
T Consensus 91 ~~~P~ 95 (98)
T cd05762 91 VDKPD 95 (98)
T ss_pred ecCCC
Confidence 87764
No 2
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.81 E-value=5.2e-18 Score=75.85 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=65.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+.+.|.|.+. |.|.|.+.|++++..+... .++..........|.|..+...|.|.|.|.+.|..|.......|.
T Consensus 8 ~~G~~v~l~c~~~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~ 85 (86)
T cd05894 8 VAGNKLRLDVPIS--GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVK 85 (86)
T ss_pred EcCCEEEEEeeEe--ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEE
Confidence 5699999999998 9999999999999988653 355554444456799999999999999999999999988777665
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 86 V 86 (86)
T cd05894 86 V 86 (86)
T ss_pred C
Confidence 3
No 3
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.81 E-value=5.8e-18 Score=76.59 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=64.6
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
.+|+++.|.|.+. |.|.|.+.|++++..+....++..... .....|.|.++...|.|.|.|.+.|..|.......+.
T Consensus 14 ~~G~~v~L~C~v~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 14 MEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS 91 (92)
T ss_pred eCCCcEEEEEEEE--ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence 5699999999998 999999999999998876666555433 3345799999999999999999999999888777665
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 92 v 92 (92)
T cd05737 92 V 92 (92)
T ss_pred C
Confidence 3
No 4
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.80 E-value=1.9e-17 Score=72.13 Aligned_cols=73 Identities=30% Similarity=0.470 Sum_probs=61.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+....++..........|.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 2 ~~l~c~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 2 VRLEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEEEeeEe--eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 67899998 99999999999999886666665554455667999999999999999999999998887776653
No 5
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.79 E-value=6.5e-18 Score=73.64 Aligned_cols=74 Identities=26% Similarity=0.433 Sum_probs=60.4
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+|+++.|.|.+. |.|.|.+.|++++..+....+..... ...|.|.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 eG~~v~l~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC--EecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 588999999987 99999999999998876544433321 125899999999999999999999998888776653
No 6
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.79 E-value=9.4e-18 Score=72.89 Aligned_cols=73 Identities=32% Similarity=0.412 Sum_probs=60.6
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
|+.+.|.|.+. |.|.|.+.|++++..+....++...... .|.|.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK--AAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc--eeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999987 9999999999999877665665543222 5999999999999999999999998888777653
No 7
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.78 E-value=1e-16 Score=71.99 Aligned_cols=81 Identities=23% Similarity=0.319 Sum_probs=66.1
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEe----CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFK----FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 79 (90)
|+.+.|.|.+. |.|++.+.|++++..+... .++..... .....|.|..+...|.|.|.|.+.|..|.......
T Consensus 1 g~~~~l~C~~~--g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAH--GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEE--CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999998 9999999999999877543 34433321 11256999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy16902 80 LSVQGRRE 87 (90)
Q Consensus 80 l~v~~~~~ 87 (90)
|.|.++|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99987764
No 8
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.77 E-value=8.7e-17 Score=72.75 Aligned_cols=76 Identities=25% Similarity=0.452 Sum_probs=63.7
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
..|+.+.|.|.+. +.|.|.+.|++++..+....++..........+.+..+...|.|.|.|.+.|..|.......|
T Consensus 16 ~~G~~~~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 16 SEGESARFSCDVD--GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred eCCCcEEEEEEEe--ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 4689999999998 999999999999988776666655544445679999999999999999999999987776554
No 9
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.77 E-value=7.4e-17 Score=70.94 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=61.4
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
|+++.|.|.+. |.|.|.+.|++++..+....++..........|.+.++...|.|.|.|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVAT--GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEE--EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 67899999998 9999999999998877766665554444456799999999999999999999998776665443
No 10
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.77 E-value=5.7e-17 Score=70.71 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=58.8
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+... .++..... .+...|.|.++...|.|.|.|.+.|..|...+...|.|
T Consensus 1 v~l~C~v~--G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS--AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE--ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46899998 9999999999999988643 45544332 23346999999999999999999999999888877653
No 11
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.77 E-value=8.3e-17 Score=73.80 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCCceEEEEEEEccCC-CCCcEEEEeeCCEEcCCCCceEEEEeC-----CeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 3 PQKRKIHFEARIEPVG-DPSMRVDWFINGRPLPASSRATTTFKF-----GFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
..|+++.|.|.+. | .|+|.+.|++++..+............ ....|.+..+...|.|.|.|.+.|..|....
T Consensus 16 ~~G~~v~L~c~v~--g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~ 93 (101)
T cd04975 16 NLGENLNLVVEVE--AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSL 93 (101)
T ss_pred ECCCCEEEEEEEE--ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEE
Confidence 4688999999998 8 899999999999988754433222111 1356999999999999999999999998888
Q ss_pred EEEEEEe
Q psy16902 77 TALLSVQ 83 (90)
Q Consensus 77 ~~~l~v~ 83 (90)
...|.|.
T Consensus 94 t~~L~V~ 100 (101)
T cd04975 94 TFELYVN 100 (101)
T ss_pred EEEEEEE
Confidence 8877764
No 12
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.76 E-value=1.7e-16 Score=69.51 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=59.0
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCce-EEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRA-TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
|+.+.|.|.+. |.|.|.+.|++++..+...... ...... ..|.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 G~~v~l~C~~~--G~P~p~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEee--EeCCCeEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 67899999997 9999999999999877643211 111122 25899999999999999999999999888877765
No 13
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.76 E-value=9.8e-17 Score=69.40 Aligned_cols=71 Identities=27% Similarity=0.471 Sum_probs=57.4
Q ss_pred eEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 7 ~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
++.|.|.+. |.|.|.+.|++++..+....++....... +.+..+...|.|.|.|.+.|..|.......|.|
T Consensus 1 ~v~l~C~~~--G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE--EeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 378999998 99999999999998876655554443332 667799999999999999999999888777653
No 14
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.76 E-value=2.2e-16 Score=71.15 Aligned_cols=77 Identities=19% Similarity=0.280 Sum_probs=61.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+.+.|.|.+. |.|.|.+.|++++..+................|.+..+...|.|.|.|.+.|..|.......|.
T Consensus 13 ~~G~~v~l~C~~~--G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~ 89 (90)
T cd04972 13 YEGGTATIRCTAE--GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT 89 (90)
T ss_pred cCCCcEEEEEEEE--EcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence 4689999999998 9999999999999877554332222223345689999999999999999999999888777664
No 15
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.76 E-value=1.1e-16 Score=72.08 Aligned_cols=78 Identities=32% Similarity=0.558 Sum_probs=69.0
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
..|+++.|.|.+. +.|.|.+.|++++..+....++..........|.+.++...|.|.|.|.+.+..|.......|.|
T Consensus 13 ~~G~~~~l~c~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 13 KEGESVTLECEVS--GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp ETTSEEEEEEEEE--ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred eCCCEEEEEEEEE--eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 4699999999998 88999999999999988877777776667888999999999999999999999988888877654
No 16
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.76 E-value=7.3e-17 Score=70.14 Aligned_cols=73 Identities=30% Similarity=0.361 Sum_probs=60.8
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
|+++.|.|.+. |.|.|.+.|++++..+....++..... ..|.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK--AAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee--EcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999987 999999999999988766655554322 25899999999999999999999999888877653
No 17
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.75 E-value=1.2e-16 Score=69.90 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=59.1
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCc-eEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
|+.+.|.|.+. |.|.|.+.|+++++.+..... ........ .+.+..+...|.|.|.|.+.|..|.......|.|
T Consensus 1 g~~~~l~C~a~--G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRAN--GNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEee--EeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 67899999998 999999999999988753321 11112222 5788899999999999999999999998888776
No 18
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.75 E-value=6.2e-16 Score=69.00 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=62.1
Q ss_pred ceEEEEEEEccCCCCCc--EEEEeeCCEEcCCC---CceEE-EEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEE
Q psy16902 6 RKIHFEARIEPVGDPSM--RVDWFINGRPLPAS---SRATT-TFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~--~~~w~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 79 (90)
+++.|.|.+. |.|.| .+.|++++..+... .++.. ........|.|.+++..|.|.|.|.+.|..|...+...
T Consensus 1 ~~~~L~C~a~--g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHAS--HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999998 88877 57999999877542 22211 11223347999999999999999999999999999999
Q ss_pred EEEecCC
Q psy16902 80 LSVQGRR 86 (90)
Q Consensus 80 l~v~~~~ 86 (90)
|.|.++|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998876
No 19
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.74 E-value=4.3e-16 Score=68.02 Aligned_cols=73 Identities=27% Similarity=0.370 Sum_probs=58.1
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+... .++..... .+...|.|..+...|.|.|.|.+.|..|...+...|.|
T Consensus 1 v~L~C~v~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS--AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe--ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 46899998 9999999999999988643 44444322 23346999999999999999999999998888776653
No 20
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.74 E-value=2.1e-16 Score=69.12 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=59.5
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
|+++.|.|.+. |.|.|.+.|++++..+......... ......|.+..+...|.|.|.|.+.|..|...+...|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~~~~~~~-~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRR-RVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEce--eeCCCEEEEEECCEECCCCCCcceE-EccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 67899999987 9999999999999887654322111 112235899999999999999999999999888877765
No 21
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.74 E-value=1.4e-16 Score=73.09 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=63.0
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEe------CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFK------FGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
..|+.+.|.|.+. |.|+|.+.|++++..+....+...... .....|.+.++...|.|.|.|.+.|..|....
T Consensus 16 ~~~~~~~l~~~v~--g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~ 93 (101)
T cd05859 16 NLHEVKEFVVEVE--AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY 93 (101)
T ss_pred ecCCcEEEEEEEE--EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence 4578899999998 999999999999999876543322111 11346999999999999999999999999888
Q ss_pred EEEEEEe
Q psy16902 77 TALLSVQ 83 (90)
Q Consensus 77 ~~~l~v~ 83 (90)
...|.|.
T Consensus 94 t~~l~V~ 100 (101)
T cd05859 94 TFALQIQ 100 (101)
T ss_pred EEEEEEE
Confidence 8877764
No 22
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.74 E-value=4.2e-16 Score=70.49 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=63.3
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
.+|+.+.|.|.+. +.|.|.+.|++++..+....++..... .....|.+..+...|.|.|.|.+.|..|.......+.
T Consensus 14 ~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 14 MEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS 91 (92)
T ss_pred cCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence 5699999999987 899999999999988766555443322 2234689999999999999999999999988887765
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 92 ~ 92 (92)
T cd05891 92 V 92 (92)
T ss_pred C
Confidence 3
No 23
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.74 E-value=2.6e-16 Score=68.67 Aligned_cols=73 Identities=29% Similarity=0.461 Sum_probs=58.0
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeC-CeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKF-GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+... .++...... ....|.|..+...|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~v~--G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 46899998 9999999999999887643 444443322 2335899999999999999999999999888776653
No 24
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.74 E-value=1.4e-16 Score=71.54 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=60.4
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
.+|+.+.|.|.+. |.|.|.+.|++++..+....++.. .. ..|.|.++...|.|.|.|.+.|..|.......|.|
T Consensus 14 ~~G~~v~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~--~~--~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 14 LKGQNVTLECFAL--GNPVPVIRWRKILEPMPATAEISM--SG--AVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYV 87 (88)
T ss_pred eCCCcEEEEEEec--ccCCCEEEEEECCcCCCCCCEEec--CC--CEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEE
Confidence 4689999999998 999999999999876654332221 12 25899999999999999999999999888887766
No 25
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.74 E-value=7.4e-16 Score=68.73 Aligned_cols=79 Identities=29% Similarity=0.452 Sum_probs=61.0
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceE-EEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRAT-TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
...|+.+.|.|.+. |.|.|.+.|++++..+....+.. .........+.+..+...|.|.|.|.+.|..|.......|
T Consensus 6 v~~G~~~~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 6 VPAANTVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred cCCCCEEEEEEEcC--CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 35699999999987 89999999999998876543321 1111223357888999999999999999999988887766
Q ss_pred EE
Q psy16902 81 SV 82 (90)
Q Consensus 81 ~v 82 (90)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 53
No 26
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.73 E-value=6.8e-16 Score=70.18 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=63.2
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+.+.|.|.+. |.|.|.+.|++++..+... .++... .....|.+..+...|.|.|.|.+.|..|.......|.
T Consensus 16 ~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 16 NLGQSVTLACDAD--GFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred eCCCCEEEEEecc--EeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 4589999999997 9999999999999887654 333222 2233589999999999999999999999988888887
Q ss_pred Eec
Q psy16902 82 VQG 84 (90)
Q Consensus 82 v~~ 84 (90)
|..
T Consensus 92 V~~ 94 (95)
T cd05730 92 VFA 94 (95)
T ss_pred EEe
Confidence 753
No 27
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.72 E-value=3.8e-16 Score=69.73 Aligned_cols=74 Identities=28% Similarity=0.531 Sum_probs=60.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
..|+.+.|.|.+. |.|.|.+.|++++..+....++... .. .+.+.++...|.|.|.|.+.|..|....+..|.|
T Consensus 12 ~~G~~~~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 12 DIGSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred cCCCcEEEEEEee--EeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 4589999999998 9999999999999987665554432 22 5888999999999999999999998887776653
No 28
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.72 E-value=1.3e-15 Score=67.95 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=60.9
Q ss_pred ceEEEEEEEccCCCCCc--EEEEeeCCEEcCCCC---ceE-EEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEE
Q psy16902 6 RKIHFEARIEPVGDPSM--RVDWFINGRPLPASS---RAT-TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~--~~~w~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 79 (90)
+++.|.|.+. +.|.| .+.|++++..+.... ++. .........|.|.+++..|.|.|.|.+.|..|.......
T Consensus 1 e~~~L~C~~~--g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHAS--HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 4689999997 88877 568999998775331 111 111122346999999999999999999999999999999
Q ss_pred EEEecCC
Q psy16902 80 LSVQGRR 86 (90)
Q Consensus 80 l~v~~~~ 86 (90)
|.|.++|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998876
No 29
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.72 E-value=1.1e-15 Score=69.80 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=59.3
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-----CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-----SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 79 (90)
|+.+.|.|.+. |.|.|.+.|++++..+... .++..........|.|..+...|.|.|.|.+.|..|.......
T Consensus 17 g~~v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 94 (97)
T cd05869 17 EEQITLTCEAS--GDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMY 94 (97)
T ss_pred CCCEEEEEEee--EeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEE
Confidence 68899999998 9999999999988765432 1222222233356899999999999999999999999888877
Q ss_pred EEE
Q psy16902 80 LSV 82 (90)
Q Consensus 80 l~v 82 (90)
|.|
T Consensus 95 l~v 97 (97)
T cd05869 95 LEV 97 (97)
T ss_pred EEC
Confidence 754
No 30
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.71 E-value=4.6e-16 Score=66.41 Aligned_cols=65 Identities=17% Similarity=0.400 Sum_probs=53.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|+++++.+.... ....|.+.++...|.|.|+|.+.|..|.......+.+
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVA--AYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CEEEEEEE--EeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 36889998 99999999999998875321 1236899999999999999999999997777766655
No 31
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.71 E-value=2.1e-15 Score=66.72 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=55.4
Q ss_pred EEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEE-------eCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-------KFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 10 l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.+. |.|.|.++|++++..+....+..... ......|.+..+...|.|.|.|.+.|..|.......+.+
T Consensus 3 i~~~v~--G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 3 IPFTVR--GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEEEeE--eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 578887 99999999999999887654332211 122346899999999999999999999999888776653
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.70 E-value=1.9e-15 Score=69.05 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=58.5
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeC--CEEcCC-----CCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFIN--GRPLPA-----SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
.+|+++.|.|.+. |.|.|.+.|++. +..+.. ..++..........|.|.++...|.|.|.|.+.|..|...
T Consensus 14 ~~G~~v~l~C~~~--G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 91 (98)
T cd05870 14 VENGAATLSCKAE--GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGGHQ 91 (98)
T ss_pred cCCCcEEEEEecc--cCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCcce
Confidence 4689999999987 999999999984 333321 1234333223345699999999999999999999999887
Q ss_pred eEEEEE
Q psy16902 76 STALLS 81 (90)
Q Consensus 76 ~~~~l~ 81 (90)
....|.
T Consensus 92 ~~~~l~ 97 (98)
T cd05870 92 KSMYLD 97 (98)
T ss_pred eEEEEe
Confidence 776654
No 33
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.70 E-value=1.6e-15 Score=67.45 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=62.0
Q ss_pred ceEEEEEEEccCCCCCcEEEEeeCCEEcCC--C-CceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPA--S-SRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~--~-~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
+++.|.|.+...+.+++.+.|+++++.+.. . .++..... .....|.|.+++..|.|.|+|.+.+..+.......|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468899998722355788999999998863 2 23322111 1223599999999999999999999999999999999
Q ss_pred EecCC
Q psy16902 82 VQGRR 86 (90)
Q Consensus 82 v~~~~ 86 (90)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99886
No 34
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.70 E-value=2.3e-15 Score=65.87 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=57.6
Q ss_pred EEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEe
Q psy16902 9 HFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83 (90)
Q Consensus 9 ~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 83 (90)
.|.|.+. |.|.|.+.|++++..+................+.+..+...|.|.|.|.+.|..|.......|.|.
T Consensus 2 ~L~C~v~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAE--GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred EeEeEee--ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 6889998 999999999999988764432222222233468999999999999999999999998888888775
No 35
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.70 E-value=1.8e-15 Score=68.89 Aligned_cols=77 Identities=23% Similarity=0.382 Sum_probs=59.8
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-----CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-----SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~ 77 (90)
.+|+++.|.|.+. |.|.|.+.|++++..+... .++..........|.|.++...|.|.|.|.+.|..|.....
T Consensus 14 ~~g~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s 91 (96)
T cd05732 14 VELEQITLTCEAE--GDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91 (96)
T ss_pred ecCCcEEEEEEEe--EcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence 4688999999998 9999999999988655432 12222222334579999999999999999999999988777
Q ss_pred EEEE
Q psy16902 78 ALLS 81 (90)
Q Consensus 78 ~~l~ 81 (90)
..|.
T Consensus 92 ~~l~ 95 (96)
T cd05732 92 MYLE 95 (96)
T ss_pred EEEe
Confidence 7665
No 36
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.70 E-value=1.6e-15 Score=68.32 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=59.7
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcC--------CCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLP--------ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
|+.+.|.|.+. +.|.|.+.|++++.... ...++..... ..|.|.++...|.|.|.|.+.|..|....
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEAT--GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECC--ccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 67899999987 99999999999875321 1223333211 25899999999999999999999999998
Q ss_pred EEEEEEecC
Q psy16902 77 TALLSVQGR 85 (90)
Q Consensus 77 ~~~l~v~~~ 85 (90)
...|.|.+.
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 888888754
No 37
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.69 E-value=1.1e-15 Score=65.71 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=55.2
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
+.|.|.+. |.|.|.+.|++++..+....++..... ..|.|..+...|.|.|.|.+.|..|.......|
T Consensus 1 v~L~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQ--GDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecce--EeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46899987 999999999999988766555444322 258999999999999999999999988776654
No 38
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.69 E-value=2.6e-15 Score=65.91 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=54.6
Q ss_pred EEEEEccCCCCCcEEEEeeCCEEcCCCCceEEE-----EeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTT-----FKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 10 l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
+.|.+. |.|.|.++|++++..+....+.... .......|.+..+...|.|.|.|.+.|..|.......+.
T Consensus 3 i~~~v~--G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVK--GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEe--EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 568887 9999999999999998765543211 111234699999999999999999999999887776554
No 39
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.69 E-value=1.5e-15 Score=68.13 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=59.6
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
.+|+.+.|.|.+. |.|.|.+.|++++..+....... . ....|.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 14 ~~g~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~--~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 14 LKGQNVTLECFAL--GNPVPQIKWRKVDGSMPSSAEIS--M--SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred eCCCcEEEEEEee--EeCCCEEEEEECCCcCCCccEEE--E--eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEE
Confidence 4689999999987 99999999999876554433222 1 1236899999999999999999999999888887766
No 40
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.69 E-value=9.6e-15 Score=67.92 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=63.7
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEE--e--CCeEEEEEcCCC-CCCCeEEEEEEEcCCcceEeE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTF--K--FGFISLDLLSIV-LHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~--~--~~~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~~~ 77 (90)
.|..+.|.|.+. |.|.|.+.|++++..+... .++.... . .....|.|..+. ..|.|.|.|.+.|..|.....
T Consensus 22 ~g~~v~L~C~a~--G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 22 GSSDANLVCQAQ--GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred CCCEEEEEEECc--ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 357899999987 9999999999999887543 3433221 1 112468888886 589999999999999999988
Q ss_pred EEEEEecCCC
Q psy16902 78 ALLSVQGRRE 87 (90)
Q Consensus 78 ~~l~v~~~~~ 87 (90)
..|.+.+.|.
T Consensus 100 i~L~~~~~p~ 109 (109)
T cd05773 100 IQLVSTSRPD 109 (109)
T ss_pred EEEEecCCCC
Confidence 8998887763
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.68 E-value=8e-15 Score=66.72 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=58.9
Q ss_pred CCCceEEEEEEEccCCCCC-cEEEEee-CCEEcCC-CCceEEEE-eCCeEEEEEcCCCCCCCeEEEEEEEcCC-cceEeE
Q psy16902 3 PQKRKIHFEARIEPVGDPS-MRVDWFI-NGRPLPA-SSRATTTF-KFGFISLDLLSIVLHDSGEYTVRVTNNS-GSAEST 77 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~~~~~-~~~~~~ 77 (90)
..|+.+.|.|.+. |.|. |.+.|++ ++..+.. ..++.... ......|.|..+...|.|.|.|.+.|.. |.....
T Consensus 13 ~~G~~v~l~C~v~--G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s 90 (96)
T cd05865 13 SVGESKFFLCQVA--GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEAT 90 (96)
T ss_pred CCCCeEEEEEEEe--CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence 3589999999998 9984 7999997 6765544 33433322 2223579999999999999999999996 777777
Q ss_pred EEEEE
Q psy16902 78 ALLSV 82 (90)
Q Consensus 78 ~~l~v 82 (90)
..|.|
T Consensus 91 ~~l~v 95 (96)
T cd05865 91 VNVKI 95 (96)
T ss_pred EEEEE
Confidence 77654
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.68 E-value=1.4e-15 Score=65.74 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=55.4
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+....+.. .....|.+.++...|.|.|.|.+.|..|.......+.+
T Consensus 1 ~~l~c~v~--g~P~p~v~W~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVK--AYPPPEIQWYKNGKLISEKNRTK----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEE----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 36889998 99999999999999887653322 11236899999999999999999999988777776654
No 43
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=1.6e-15 Score=65.61 Aligned_cols=70 Identities=27% Similarity=0.384 Sum_probs=54.9
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+.... .... .....|.|.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 ~~L~C~~~--G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAE--GLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 36899988 99999999999987654432 2121 22236899999999999999999999999888777765
No 44
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.68 E-value=1.3e-14 Score=65.53 Aligned_cols=70 Identities=20% Similarity=0.392 Sum_probs=56.2
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEee-CCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFI-NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
..|+++.|.|.+. |.|. .+.|++ ++..+....++..........|.|..+...|.|.|.|.+.|..|...
T Consensus 13 ~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 13 SVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred cCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 4589999999997 8887 899997 46666555566555445455799999999999999999999988754
No 45
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.67 E-value=5.9e-15 Score=64.74 Aligned_cols=69 Identities=28% Similarity=0.397 Sum_probs=52.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCC-ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASS-RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
+.|.|.+. |.|.|.+.|++++..+.... ++.... ....|.+..+...|.|.|.|.+.|..|.......+
T Consensus 1 v~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~ 70 (77)
T cd05760 1 VTLRCHID--GHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNF 70 (77)
T ss_pred CEEEEEee--ecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceE
Confidence 47899988 99999999999998875543 223322 22368899999999999999999999876544333
No 46
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.67 E-value=7.3e-15 Score=63.95 Aligned_cols=72 Identities=26% Similarity=0.496 Sum_probs=55.4
Q ss_pred CceEEEEEEEccCCCCCcEEEEee-CCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFI-NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+.... .. ..+.+..+...|.|.|.|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~-~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVY-DN--GTLDILITTVKDTGSFTCIASNAAGEATATVELH 73 (74)
T ss_pred CCeEEEEEEcc--CcCCCEEEEEeCCCEEecCCCeEEEe-cC--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence 67899999987 99999999997 56655544333222 22 2578888999999999999999999877776654
No 47
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.67 E-value=3.5e-15 Score=65.12 Aligned_cols=71 Identities=24% Similarity=0.421 Sum_probs=53.3
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEc-CC--CCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPL-PA--SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++... .. ..++..... ...+.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 a~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAAT--GHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecc--cccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 36889987 9999999999987632 22 122222212 225889999999999999999999998887777765
No 48
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.67 E-value=2.7e-15 Score=64.63 Aligned_cols=67 Identities=22% Similarity=0.381 Sum_probs=53.7
Q ss_pred EEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 9 HFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 9 ~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
.+.|.+. |.|.|.+.|+++++.+....+. .. ...|.+..+...|.|.|.|.+.|..|.......+.+
T Consensus 2 ~~~c~v~--G~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 2 KIPVKYY--GYPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEEeEEE--EeCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 5789998 9999999999999988654322 11 125899999999999999999999997777665554
No 49
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.67 E-value=1.6e-14 Score=65.56 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=52.3
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCC-CCCCeEEEEEEEcCCcceEe
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~~ 76 (90)
+|+.+.|.|.+. |.|.|.+.|++++..+............+ .+.+.... ..|.|.|.|.+.|..|...+
T Consensus 18 ~g~~v~l~C~~~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 18 DEKKVILNCEAR--GNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CCCEEEEEEEee--ecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 478899999998 99999999999998886443222222222 46777764 68999999999999987654
No 50
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.66 E-value=6.9e-15 Score=65.08 Aligned_cols=74 Identities=22% Similarity=0.417 Sum_probs=57.7
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
.|+++.|.|.+. +.|.|.+.|++++..+....... .......|.+..+...|.|.|.|.+.|..|.......|.
T Consensus 8 ~G~~v~L~C~~~--g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 8 VGSSVRLKCVAS--GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred CCCeEEEEEEee--EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 489999999987 89999999999988665432211 112234689999999999999999999999877666554
No 51
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.66 E-value=7.2e-15 Score=64.08 Aligned_cols=69 Identities=30% Similarity=0.437 Sum_probs=53.3
Q ss_pred EEEEEEEccCC-CCCcEEEEeeCCEEcCCCCceE---EEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 8 IHFEARIEPVG-DPSMRVDWFINGRPLPASSRAT---TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 8 ~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
+.|.|.+. + .|.|.+.|++++..+....+.. .........|.|..+...|.|.|.|.+.|..|......
T Consensus 1 ~~l~C~~~--g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEAT--SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEcc--CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 36899987 8 8999999999998876543321 22223345689999999999999999999998766554
No 52
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.66 E-value=1e-14 Score=62.71 Aligned_cols=68 Identities=25% Similarity=0.383 Sum_probs=51.6
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
|+++.|.|.+. |.|.|.+.|++++..+....+... ....+.+.++. +.|.|.|.+.|..|.......|
T Consensus 1 G~~v~L~C~a~--G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAV--GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEee--ecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999998 999999999999987754433221 12246777764 7899999999999987766544
No 53
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.66 E-value=1.3e-14 Score=65.37 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=56.1
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeC----CEEcCCCC--ceEEEEe-------CCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFIN----GRPLPASS--RATTTFK-------FGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~----~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
|+++.|.|.+. +.|.|.+.|+++ +..+.... ....... .....|.|.+++..|.|.|.|.+.|..
T Consensus 1 G~~v~L~C~~~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVY--SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEe--cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 67899999998 999999999984 33332211 1111111 112469999999999999999999999
Q ss_pred cceEeEEEEEE
Q psy16902 72 GSAESTALLSV 82 (90)
Q Consensus 72 ~~~~~~~~l~v 82 (90)
|.......|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99888887776
No 54
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.65 E-value=3e-14 Score=64.31 Aligned_cols=74 Identities=20% Similarity=0.346 Sum_probs=56.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeE-EEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST-ALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~-~~l~ 81 (90)
.+|+++.|.|.+. |. .|.+.|++++..+... ++... .....|.|.++...|.|.|.|.+.|..|..... ..|.
T Consensus 16 ~~g~~v~l~C~a~--g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~ 89 (91)
T cd05740 16 EDNQPVTLTCEAE--GQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILN 89 (91)
T ss_pred ccCCcEEEEEEeC--CC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEE
Confidence 4599999999997 88 9999999999876543 33332 222368999999999999999999999875553 3444
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 90 V 90 (91)
T cd05740 90 V 90 (91)
T ss_pred e
Confidence 3
No 55
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.64 E-value=2.8e-15 Score=68.00 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=57.3
Q ss_pred CCCCceEEEEEEEccCC-----CCCcEEEEeeCCEEcCCC--CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcce
Q psy16902 2 DPQKRKIHFEARIEPVG-----DPSMRVDWFINGRPLPAS--SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~-----~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~ 74 (90)
..+|+.+.|.|.+. + .|.|.+.|++++..+... ......... ..|.|..+...|+|.|.|.+.|..|..
T Consensus 11 v~~G~~~~L~C~~~--g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 11 VLEGEPVVIKCPLF--YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQK--DLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EecCCCeEEECCCC--CcccccCCCceEEEEEcCCCCcccccccceeeecC--CeEEEccCCcccCeEEEEEEcCCCccE
Confidence 35799999999887 7 688999999998654321 111111112 258999999999999999999999888
Q ss_pred EeEEEEEE
Q psy16902 75 ESTALLSV 82 (90)
Q Consensus 75 ~~~~~l~v 82 (90)
.....|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 87776653
No 56
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=8.6e-15 Score=62.94 Aligned_cols=69 Identities=32% Similarity=0.470 Sum_probs=53.9
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+.. .++.... ...|.+.++...|.|.|.|.+.|..|.......|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG--GDPVPTVLWRKEDGELPK-GRAEILD---DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc--cCCCCEEEEEECCccCCC-CcEEEee---CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 46899987 999999999999766543 2333321 225899999999999999999999998887776653
No 57
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.64 E-value=1.5e-14 Score=63.74 Aligned_cols=71 Identities=21% Similarity=0.334 Sum_probs=56.0
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
.+|+.+.|.|.+. +. .+.+.|++++..+....++... .. .|.|..+...|+|.|.|.+.|..|.......+
T Consensus 7 ~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 7 HPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred cCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 5799999999986 65 5789999999888765554432 22 58999999999999999999988776555544
No 58
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.63 E-value=1.9e-14 Score=62.64 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=52.3
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCC--CCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE-eEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPA--SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE-STALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~l~v 82 (90)
++|.|.+. |.|.|.+.|++++..+.. ..++... .. ..+.+..+...|.|.|.|.+.|..|... ....|.|
T Consensus 1 a~l~C~~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~-~~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAAS--GNPDPEITWFKDFLPVDTTSNGRIKQL-RS--GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECccCCCCCEEEc-CC--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 36899987 999999999999987753 3343332 12 2488999999999999999999988743 3344443
No 59
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.63 E-value=2.3e-14 Score=64.56 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=55.3
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCC----EEcCCC--CceEEEE-------eCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFING----RPLPAS--SRATTTF-------KFGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~----~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
|+.+.|.|.+. |.|.|.+.|++++ ..+... ....... ......+.+.++...|.|.|.|.+.|..
T Consensus 1 G~~v~l~C~v~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEe--CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 67899999998 9999999999863 222111 1111111 0122358899999999999999999999
Q ss_pred cceEeEEEEEE
Q psy16902 72 GSAESTALLSV 82 (90)
Q Consensus 72 ~~~~~~~~l~v 82 (90)
|...+...|.|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99888877766
No 60
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.62 E-value=8.8e-14 Score=63.55 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=53.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-----CceEEEEeCCeEEEEEc--CCCCCCCeEEEEEEEcCCcc-e
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-----SRATTTFKFGFISLDLL--SIVLHDSGEYTVRVTNNSGS-A 74 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~g~y~C~~~~~~~~-~ 74 (90)
.+|+.+.|.|.+. |.|.|.+.|++++..+... .+...........+.+. .....|.|.|.|.+.|..|. .
T Consensus 14 ~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~ 91 (100)
T cd07693 14 SKGDPATLNCKAE--GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV 91 (100)
T ss_pred cCCCeEEEEeeCC--cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence 4689999999987 9999999999999887551 11111112222222222 23678999999999999987 4
Q ss_pred EeEEEEEE
Q psy16902 75 ESTALLSV 82 (90)
Q Consensus 75 ~~~~~l~v 82 (90)
.....|.|
T Consensus 92 s~~~~l~v 99 (100)
T cd07693 92 SRNASLEV 99 (100)
T ss_pred cceEEEEe
Confidence 44445543
No 61
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.62 E-value=3e-14 Score=62.95 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=54.0
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCE---E-cCCCCceE-EEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGR---P-LPASSRAT-TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~---~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 79 (90)
|+++.|.|.+. |.|.|.+.|+++.. . ........ .........|.|..+...|.|.|.|.+.|..|.......
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVT--GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeecc--ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 67899999987 99999999998732 1 11111100 000112235899999999999999999999998887777
Q ss_pred EEE
Q psy16902 80 LSV 82 (90)
Q Consensus 80 l~v 82 (90)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 653
No 62
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.62 E-value=2e-14 Score=62.02 Aligned_cols=70 Identities=30% Similarity=0.431 Sum_probs=54.3
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
+.|.|.+. |.|.|.+.|++++..+... +.... .....|.+.++...|.|.|.|.+.|..|.......+.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE--GLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 46899987 9999999999998766432 21111 12236899999999999999999999998887777665
No 63
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.61 E-value=2.3e-14 Score=62.83 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=46.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC--CceEEEEeCCeEEEEEcCCCC----CCCeEEEEEEEcCCcceEe
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS--SRATTTFKFGFISLDLLSIVL----HDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~g~y~C~~~~~~~~~~~ 76 (90)
+.|.|.+. |.|.|.+.|++++..+... .++... .....+.+..+.. .|.|.|.|.+.|..|...+
T Consensus 1 i~l~C~~~--G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAK--GNPPPTFSWTRNGTHFDPEKDPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCCCCCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 46899987 9999999999999887543 233222 2222466666543 5789999999999987554
No 64
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=1.7e-13 Score=62.21 Aligned_cols=69 Identities=22% Similarity=0.385 Sum_probs=50.9
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCC-CCCCeEEEEEEEcCCcceEeE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~~~ 77 (90)
|+++.|.|.+. |.|.|.+.|++++..+............+ .|.+.... ..|.|.|.|.+.|..|...+.
T Consensus 19 g~~v~l~C~a~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 88 (94)
T cd05850 19 EEKVTLGCRAR--ASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVSR 88 (94)
T ss_pred CCeEEEEeEce--eCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcEEEE
Confidence 46899999987 99999999999998876432211211122 46776654 589999999999999876653
No 65
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=5.8e-14 Score=61.57 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=45.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC--CceEEEEeCCeEEEEEcCCCC----CCCeEEEEEEEcCCcceEeE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS--SRATTTFKFGFISLDLLSIVL----HDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~g~y~C~~~~~~~~~~~~ 77 (90)
+.|.|.+. |.|.|.+.|++++..+... .+.......+ .+.+..+.. .|.|.|.|.+.|..|...+.
T Consensus 1 ~~l~C~a~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAK--GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 46899987 9999999999999876432 2222221222 455555543 36899999999998875553
No 66
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.60 E-value=1.3e-13 Score=61.56 Aligned_cols=71 Identities=25% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~ 77 (90)
..|+++.|.|.+. .+.|.|.+.|++++..+... .++.... ...|.+.++...|.|.|.|.+.|..|.....
T Consensus 9 ~~G~~v~l~C~~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 9 AVGEMAVLECSPP-RGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred eCCCCEEEEEECC-CCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 4689999999872 28899999999999887653 3333322 2258999999999999999999998876543
No 67
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.58 E-value=1.4e-13 Score=61.24 Aligned_cols=76 Identities=12% Similarity=0.231 Sum_probs=55.7
Q ss_pred CceEEEEEEEccCCC--CCcEEEEeeCCEEcCCCCc----eE-EEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeE
Q psy16902 5 KRKIHFEARIEPVGD--PSMRVDWFINGRPLPASSR----AT-TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 5 g~~~~l~C~~~~~~~--~~~~~~w~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~ 77 (90)
|+.+.|.|.+. +. |.|.+.|..++..+..... .. .........|.|.++...|.|.|.|.+.|..+....+
T Consensus 1 Ge~~~L~C~~~--g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVL--TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEE--eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 68899999998 87 8899999877654322110 00 0111123469999999999999999999999888887
Q ss_pred EEEEE
Q psy16902 78 ALLSV 82 (90)
Q Consensus 78 ~~l~v 82 (90)
..+.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 77654
No 68
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.57 E-value=3.5e-13 Score=60.01 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=53.9
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCC----ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCc--ceEeEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASS----RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG--SAESTA 78 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~--~~~~~~ 78 (90)
|+++.|.|.+. +.|.+.+.|...+....... ..........+.|.|.+++..|.|.|.|.+.+... ....+.
T Consensus 1 Ge~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQ--GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEE--CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 78899999998 88999999998765332111 11111111245699999999999999999998754 555556
Q ss_pred EEEEe
Q psy16902 79 LLSVQ 83 (90)
Q Consensus 79 ~l~v~ 83 (90)
.|.|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 66653
No 69
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.57 E-value=2.5e-13 Score=59.53 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=46.4
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCC--CCceEEEEeCCeEEEEEcCCC---C-CCCeEEEEEEEcCCcceEeE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPA--SSRATTTFKFGFISLDLLSIV---L-HDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~-~~~g~y~C~~~~~~~~~~~~ 77 (90)
+.|.|.+. |.|.|.+.|++++..+.. ..++...... ..+.+..+. . .+.|.|.|.+.|..|.....
T Consensus 1 ~~l~C~~~--G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAK--GNPVPTFQWTRNGKFFNVAKDPRVSMRRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEecc--ccCCCEEEEEECCEEccCcCCCcEEEeCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899998 999999999999987632 3333332222 246666543 2 35899999999999866554
No 70
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.57 E-value=2.4e-13 Score=58.77 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=49.9
Q ss_pred EEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 9 HFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 9 ~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
.|.|.+. |.|.|.+.|++++..+...... ..... ..|.|.++...|.|.|.|.+.+..........+
T Consensus 2 ~l~c~v~--g~P~P~v~W~kdg~~l~~~~~~-~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 2 RLTPKVK--AFPAPEVIWLKDGLPAAEKCSR-YHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred eEEeeEE--EcCCCeEEEEECCEECCCCCcE-EEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 5789998 9999999999999887654221 11122 259999999999999999999975444444433
No 71
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.57 E-value=7.5e-13 Score=60.51 Aligned_cols=76 Identities=21% Similarity=0.175 Sum_probs=58.0
Q ss_pred CCCceEEEEEEEccCCCCCc-EEEEeeCCEEcCCC--CceEEEEe----CCeEEEEEcCCCCCC-CeEEEEEEEcCCcce
Q psy16902 3 PQKRKIHFEARIEPVGDPSM-RVDWFINGRPLPAS--SRATTTFK----FGFISLDLLSIVLHD-SGEYTVRVTNNSGSA 74 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~-~g~y~C~~~~~~~~~ 74 (90)
.+|+.+.|.|.+. |.|.| .+.|.+++..+... .++..... .....|.|..+...+ .|.|.|.+.|..|..
T Consensus 14 ~~G~~v~L~C~~~--g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~ 91 (98)
T cd05758 14 ILGDKGRVECFIF--STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG 91 (98)
T ss_pred eCCCcEEEEEEEc--ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence 4689999999998 99999 59999999877543 34444322 123468999999855 799999999999987
Q ss_pred EeEEEE
Q psy16902 75 ESTALL 80 (90)
Q Consensus 75 ~~~~~l 80 (90)
.....|
T Consensus 92 ~~~~~L 97 (98)
T cd05758 92 TAIISL 97 (98)
T ss_pred cEEEEe
Confidence 766544
No 72
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.56 E-value=9.7e-13 Score=58.46 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=58.3
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEE-EeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTT-FKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+++.|.|.+. +.|.+.+.|++++..+......... .......+.+..+...|.|.|.|.+.|..|.......|.
T Consensus 7 ~~G~~~~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 7 PAGSTVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred cCCCcEEEEEEcC--CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 4688999999987 8899999999999877544322211 112234578889999999999999999988877666554
No 73
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.55 E-value=5.9e-13 Score=58.20 Aligned_cols=70 Identities=27% Similarity=0.422 Sum_probs=51.0
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCC----CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS----SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
+.|.|.+. .+.|.+.+.|+++++.+... .++..........|.|.++...|.|.|.|.+.|..|......
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 36899875 13577899999999877532 122222233445789999999999999999999988766554
No 74
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.54 E-value=7.8e-13 Score=59.69 Aligned_cols=68 Identities=22% Similarity=0.417 Sum_probs=49.5
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCC-CCCCeEEEEEEEcCCcceEe
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~~ 76 (90)
+.++.|.|.+. |.|.|.+.|++++..+............+ .|.+.+.. ..|.|.|.|.+.|..|....
T Consensus 19 ~~~~~l~C~~~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 19 EGKVSLNCRAR--GSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCEEEEEEeee--EcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 45799999997 99999999999998874322211221222 46777665 48999999999999886543
No 75
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.54 E-value=4.1e-13 Score=60.81 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=50.8
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeCCeEEEEEcCCC-CCCCeEEEEEEEcCCcceEeE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~~~ 77 (90)
+..+.|.|.+. |.|.|.+.|++++..+... .++... .+ .|.+.... ..|.|.|.|.+.|..|...+.
T Consensus 19 ~~~v~l~C~a~--G~P~P~i~W~k~~~~i~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~ 87 (93)
T cd05849 19 EGKVSVNCRAR--ANPFPIYKWRKNNLDIDLTNDRYSMV--GG--NLVINNPDKYKDAGRYVCIVSNIYGKVRSR 87 (93)
T ss_pred CCeEEEeCcCc--cCCCCEEEEEECCEEccCCCCeEEEE--CC--EEEECcCCcCCCCEEEEEEEEeCcceEEEc
Confidence 34699999987 9999999999999877532 333222 22 47787774 589999999999999876543
No 76
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=1.4e-12 Score=59.31 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=50.2
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCc--eEEEEeCCeEEEEEcCC-----CCCCCeEEEEEEEcC-Ccce
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR--ATTTFKFGFISLDLLSI-----VLHDSGEYTVRVTNN-SGSA 74 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~g~y~C~~~~~-~~~~ 74 (90)
.+|+++.|.|.+. +.|.|.+.|++++..+..... ....... .+.+..+ ...|.|.|.|.+.|. .|..
T Consensus 12 ~~g~~v~l~C~v~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~ 86 (95)
T cd05722 12 VRGGPVVLNCSAE--GEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI 86 (95)
T ss_pred cCCCCEEEeeecc--cCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence 4689999999997 999999999999988764432 2222222 2333333 578999999999999 8876
Q ss_pred Ee
Q psy16902 75 ES 76 (90)
Q Consensus 75 ~~ 76 (90)
.+
T Consensus 87 ~s 88 (95)
T cd05722 87 VS 88 (95)
T ss_pred EE
Confidence 43
No 77
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.53 E-value=1.9e-12 Score=58.59 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=53.4
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEee-CCEEcCCCCceEEEE-eCCeEEEEEcCCCCCCCeEEEEEEEcCCcc-eEeEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFI-NGRPLPASSRATTTF-KFGFISLDLLSIVLHDSGEYTVRVTNNSGS-AESTAL 79 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~-~~~~~~ 79 (90)
..|+++.|.|.+. |.| +.+.|++ ++..+....+..... ......|.|.++...|.|.|.|.+.|..|. ...+..
T Consensus 13 ~~G~~~~l~C~~~--G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~ 89 (92)
T cd04977 13 SVGESKFFLCQVI--GEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN 89 (92)
T ss_pred CCCCeEEEEEEeE--eeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence 3589999999997 876 5899997 555554433333322 233457999999999999999999998653 344444
Q ss_pred E
Q psy16902 80 L 80 (90)
Q Consensus 80 l 80 (90)
|
T Consensus 90 l 90 (92)
T cd04977 90 L 90 (92)
T ss_pred E
Confidence 4
No 78
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.49 E-value=1e-12 Score=58.10 Aligned_cols=65 Identities=15% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCCCceEEEEEEEccCCCCCc-EEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 2 DPQKRKIHFEARIEPVGDPSM-RVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
...|+.+.|.|.+. |.|.| .+.|++++..+.... ......|.+.... |.|.|.|.+.|..|...+
T Consensus 10 v~~G~~v~l~C~a~--G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 10 VTANTPFNLTCQAV--GPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred EcCCCCEEEEEEee--eecCCeEEEEEECCEECCCCC------CCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence 35689999999998 99999 799999998775411 0112246666653 679999999999886554
No 79
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.49 E-value=1.1e-12 Score=57.73 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=45.9
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEc-C-------CCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPL-P-------ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
+.|.|.+. |.|.|.+.|++++... . ...++.... ...|.|..+...|.|.|.|.+.|..|...
T Consensus 1 v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 71 (79)
T cd05734 1 VTLNCSAE--GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS---NGSLLIKHVLEEDSGYYLCKVSNDVGADA 71 (79)
T ss_pred CEeEeeCe--EeCCCEEEEEECCCccccccccccccCCCEEEec---CCeEEECcCCcccCEEEEEEEEeCCCCCC
Confidence 46899987 9999999999864321 1 122332221 13588999999999999999999988653
No 80
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.44 E-value=1.4e-11 Score=56.02 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=48.5
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCE--------EcCCCCceEEEEe-CCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGR--------PLPASSRATTTFK-FGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.+|+++.|.|.+. +.|.+.+.|++.+. ......++..... .....|.|.++..+|.|.|.|.+...
T Consensus 10 ~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 10 VEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 5799999999997 88999999985322 1122344443222 23457999999999999999998874
No 81
>KOG3513|consensus
Probab=99.43 E-value=1.4e-12 Score=77.95 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=70.5
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
..|.++.+.|... +.|.|.++|.+++..+....|+.+..++ .|.|.+++..|.|.|+|++.|.+|.......|.|
T Consensus 439 ~~g~~v~i~C~~~--asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~V 513 (1051)
T KOG3513|consen 439 VVGGTVTIDCKPF--ASPKPKVSWLKGGEKLLQSGRIRILEDG---TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIV 513 (1051)
T ss_pred EeCCeEEEeeccC--CCCcceEEEEcCCcccccCceEEECCCC---cEEecccCcccCcEEEEEEEcccCccceEEEEEE
Confidence 4588899999886 9999999999998877777777776555 4899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy16902 83 QGRREG 88 (90)
Q Consensus 83 ~~~~~~ 88 (90)
.+++.|
T Consensus 514 kd~tri 519 (1051)
T KOG3513|consen 514 KDATRI 519 (1051)
T ss_pred ecCceE
Confidence 877665
No 82
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.43 E-value=1.5e-11 Score=54.96 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCC-CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPAS-SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
..|+++.|.|.+ ..+.+.+.|.+++..+... .++.. .+. .|.|.++...|.|.|.|.+...
T Consensus 9 ~~G~~v~L~C~~---~~~~~~i~W~~ng~~i~~~~~r~~~-~~~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 9 KLGNNAELKCSP---KSNLARVVWKFDGKVLTPESAKYLL-YRD---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ECCCCEEEEEEC---CCCCCeEEEEECCEECCCCCceEEE-ECC---cEEEeCCCHHHCEEEEEEEEec
Confidence 469999999986 4467899999999988765 34333 222 4889999999999999998875
No 83
>smart00409 IG Immunoglobulin.
Probab=99.42 E-value=9.5e-11 Score=51.58 Aligned_cols=78 Identities=31% Similarity=0.496 Sum_probs=60.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeC-CEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFIN-GRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+++.|.|.+. +.+.+.+.|+++ +..+....+...........+.+..+...|.|.|.|.+.+..+.......|.
T Consensus 7 ~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00409 7 KEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 4689999999987 667889999998 7766644555554444345799999999999999999998877666665554
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 85 V 85 (86)
T smart00409 85 V 85 (86)
T ss_pred E
Confidence 4
No 84
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.42 E-value=9.5e-11 Score=51.58 Aligned_cols=78 Identities=31% Similarity=0.496 Sum_probs=60.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeC-CEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFIN-GRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+++.|.|.+. +.+.+.+.|+++ +..+....+...........+.+..+...|.|.|.|.+.+..+.......|.
T Consensus 7 ~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~ 84 (86)
T smart00410 7 KEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLT 84 (86)
T ss_pred eCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEE
Confidence 4689999999987 667889999998 7766644555554444345799999999999999999998877666665554
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
|
T Consensus 85 V 85 (86)
T smart00410 85 V 85 (86)
T ss_pred E
Confidence 4
No 85
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.41 E-value=8.9e-12 Score=56.01 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=53.4
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCC--ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC-CcceEeEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASS--RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN-SGSAESTAL 79 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~-~~~~~~~~~ 79 (90)
..|+.+.|.|.+. + |.+.+.|++++..+.... ........ ..+.|..+...|.|.|.|.+.+. .+.......
T Consensus 9 ~~g~~v~L~C~~~--~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~ 83 (89)
T cd04979 9 VEGNSVFLECSPK--S-NLASVVWLFQGGPLQRKEEPEERLLVTE--DGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS 83 (89)
T ss_pred ECCCcEEEEEeCC--C-CCceEEEEECCcccccccCcCceEEEcC--CCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence 4689999999974 5 888999999987654431 11111111 24789999999999999999865 455555566
Q ss_pred EEEe
Q psy16902 80 LSVQ 83 (90)
Q Consensus 80 l~v~ 83 (90)
+.|.
T Consensus 84 l~V~ 87 (89)
T cd04979 84 LNVL 87 (89)
T ss_pred EEEe
Confidence 6664
No 86
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.39 E-value=1.4e-11 Score=51.45 Aligned_cols=63 Identities=32% Similarity=0.616 Sum_probs=48.0
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
+|+++.|.|.+. +.+.+.+.|++++..+.. ..... .....+.+..+...|.|.|.|.+.+..|
T Consensus 1 ~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~--~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAE--GDPVPNITWLKDGKPLPE--SNRLS--ASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCc--cCCCCeEEEEECCEECCC--CCEEe--cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999976 788899999999887762 11111 2233688999999999999999988643
No 87
>KOG3513|consensus
Probab=99.39 E-value=1.2e-11 Score=74.08 Aligned_cols=76 Identities=28% Similarity=0.451 Sum_probs=64.9
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCc---eEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSR---ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
.|+++.|.|.+. |.|.|.+.|++|+..+....+ ..+. .+ .|.+..+...|.|.|+|.+.|..|...++..|
T Consensus 345 ~gs~v~~eC~a~--g~P~p~v~WlkNg~pl~~~~r~~~~~i~--~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L 418 (1051)
T KOG3513|consen 345 TGSNVTLECKAS--GKPNPTVKWLKNGEPLEPAERDPRYKID--DG--TLIISNVQESDSGVYQCIAENKYGTIYANAEL 418 (1051)
T ss_pred CCCCeEEEEEec--CCCCCceEEeeCCeecCccCCCcceEEe--CC--EEEEEecccccCeEEEeeeecccceEeeeeEE
Confidence 488999999998 999999999999998875544 3332 22 58999999999999999999999999999999
Q ss_pred EEecC
Q psy16902 81 SVQGR 85 (90)
Q Consensus 81 ~v~~~ 85 (90)
.|.+.
T Consensus 419 ~V~a~ 423 (1051)
T KOG3513|consen 419 KVLAS 423 (1051)
T ss_pred EEEcc
Confidence 98765
No 88
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.38 E-value=1.3e-11 Score=55.75 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred CCCceEEEEEEEcc---CCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 3 PQKRKIHFEARIEP---VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 3 ~~g~~~~l~C~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
..|++..|.|+... ...|.|.+.|+++++.+....+... ....|.+..+...|.|.|.|.+.+..+...-..
T Consensus 8 ~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~ 82 (92)
T cd05757 8 FSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNV 82 (92)
T ss_pred eeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEE
Confidence 45788999997641 0125789999999998875443321 223689999999999999999998876555444
No 89
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.37 E-value=1.1e-10 Score=53.13 Aligned_cols=66 Identities=12% Similarity=0.213 Sum_probs=48.7
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEc--------CCCCceEEEE-eCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPL--------PASSRATTTF-KFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
..|+++.|.|.+. +.|.|.+.|++.+..+ ....++.... ......|.|.++...|.|.|.|.+...
T Consensus 10 ~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 10 AVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 5799999999998 8999999998876432 1123333222 122357999999999999999998773
No 90
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.37 E-value=1.1e-10 Score=53.26 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=57.1
Q ss_pred CCCceEEEEEEEccCCCCCcE-EEEeeCCEEcCC--CCceEEEEe----CCeEEEEEcCCCCCC-CeEEEEEEEcCCcce
Q psy16902 3 PQKRKIHFEARIEPVGDPSMR-VDWFINGRPLPA--SSRATTTFK----FGFISLDLLSIVLHD-SGEYTVRVTNNSGSA 74 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~-~~w~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~-~g~y~C~~~~~~~~~ 74 (90)
.+|+++.|.|.+. +.|+|. +.|..++..+.. ..++..... ...+.|.|.++...| .|.|.|.+.|.+|..
T Consensus 14 ~~G~~~~L~C~~~--s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d 91 (98)
T cd05898 14 VRGERGKVKCFIG--STPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSG 91 (98)
T ss_pred eCCCcEEEEEEEc--cCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccc
Confidence 4799999999996 777765 689887766543 245554432 356679999998777 689999999999988
Q ss_pred EeEEEE
Q psy16902 75 ESTALL 80 (90)
Q Consensus 75 ~~~~~l 80 (90)
.....|
T Consensus 92 ~~~i~L 97 (98)
T cd05898 92 TAIIQL 97 (98)
T ss_pred eEEEEe
Confidence 766554
No 91
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.37 E-value=2.5e-11 Score=54.08 Aligned_cols=71 Identities=24% Similarity=0.300 Sum_probs=53.3
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
..|++++|.|.+. .+.|.+.+.|++++..+.... . .....|.|..+...|.|.|.|.+.|..|.......|
T Consensus 14 ~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~~----~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 14 RPGADVSFICRAK-SKSPAYTLVWTRVGGGLPSRA----M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred cCCCCEEEEEEcC-CCCCCcEEEEEECCCcCCCcc----c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 5689999999875 136788999999876543211 1 112358999999999999999999998877766544
No 92
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.35 E-value=3.8e-11 Score=54.20 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=52.5
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCC--EEc----CCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEE-cCCcceE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFING--RPL----PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVT-NNSGSAE 75 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~-~~~~~~~ 75 (90)
.+|+++.|.|.. +.|.|.+.|++.. ... ....+.... . ..|.|..+...|.|.|.|.+. +..+...
T Consensus 9 ~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~--~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 9 VENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIHT--E--RGLLLRSLQRSDAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred ecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEEe--c--CeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence 468999999984 6788999999742 111 112232221 1 248899999999999999997 5666666
Q ss_pred eEEEEEEec
Q psy16902 76 STALLSVQG 84 (90)
Q Consensus 76 ~~~~l~v~~ 84 (90)
....|.|.+
T Consensus 82 ~~~~l~v~~ 90 (91)
T cd05871 82 AKYTLHVIE 90 (91)
T ss_pred EEEEEEEec
Confidence 666777653
No 93
>KOG4194|consensus
Probab=99.33 E-value=1.3e-11 Score=70.83 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=65.8
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEE-cCCC--CceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRP-LPAS--SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
.|+...|.|.++ |.|.|++.|.+++.. ++.. .|........ .+-|.+++.+|.|.|.|.+.|..|...+...+
T Consensus 626 tg~mArl~CaAt--G~P~PeIawqkdggtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL 701 (873)
T KOG4194|consen 626 TGQMARLECAAT--GHPRPEIAWQKDGGTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATL 701 (873)
T ss_pred cccceeeeeecc--CCCCcceeehhcCCCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEE
Confidence 488899999988 999999999998765 5433 2333333333 58899999999999999999999999999999
Q ss_pred EEecCCCC
Q psy16902 81 SVQGRREG 88 (90)
Q Consensus 81 ~v~~~~~~ 88 (90)
.|.+.|.+
T Consensus 702 ~V~e~p~f 709 (873)
T KOG4194|consen 702 TVLETPSF 709 (873)
T ss_pred EEecCCcc
Confidence 99988764
No 94
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.33 E-value=9.2e-11 Score=52.45 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=53.7
Q ss_pred CceEEEEEEEccCCCC--CcEEEEeeCCEEcCCC---C--ceEE-EEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 5 KRKIHFEARIEPVGDP--SMRVDWFINGRPLPAS---S--RATT-TFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~--~~~~~w~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
|+++.|.|.+. +.+ ...+.|...+...... . +... ......+.|.|.++...|.|.|.|.+.|..+....
T Consensus 1 Ge~~~L~C~~~--~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTAR--TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEE--eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 68899999986 554 4577998766432110 1 1000 01122456999999999999999999999888888
Q ss_pred EEEEEEe
Q psy16902 77 TALLSVQ 83 (90)
Q Consensus 77 ~~~l~v~ 83 (90)
...+.|.
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 8887775
No 95
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=3.4e-11 Score=52.90 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=42.7
Q ss_pred CCCceEEEEEEEccCCCCC-cEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPS-MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.+|++++|.|.+. +.|. ..+.|++++..+... ...+.+..+ ..|.|.|.|.+.+.
T Consensus 13 ~~G~~V~L~C~~~--~~p~~~~~~W~kng~~l~~~----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 13 FQGEKVTLTCNGF--NSPEQNSTQWYHNGKLLETT----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eCCCCEEEEEeCC--CCCCCccEEEEECCEEeecc----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 4699999999986 6665 469999999876321 124677788 89999999998875
No 96
>KOG4221|consensus
Probab=99.31 E-value=7.1e-11 Score=71.67 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=65.2
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
.+.|+.+.|.|.+. +.|.|.+.|.+|+..+.... +.+... ....+.+.++...|+|.|+|.+.|......+...+.
T Consensus 249 v~~g~~v~leCvvs--~~p~p~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~ 324 (1381)
T KOG4221|consen 249 VVEGDDVVLECVVS--GVPKPSVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVT 324 (1381)
T ss_pred cccCCcEEEEEEec--CCCCCceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEE
Confidence 46799999999998 99999999999998876554 222211 123588999999999999999999666666777777
Q ss_pred EecCCCC
Q psy16902 82 VQGRREG 88 (90)
Q Consensus 82 v~~~~~~ 88 (90)
|..+|.+
T Consensus 325 V~a~P~~ 331 (1381)
T KOG4221|consen 325 VLAPPGF 331 (1381)
T ss_pred EEcCCCC
Confidence 8777765
No 97
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.30 E-value=4.7e-11 Score=50.43 Aligned_cols=61 Identities=26% Similarity=0.445 Sum_probs=44.0
Q ss_pred CceEEEEEEE-ccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCe--EEEEEcCCCCCCCeEEEEEE
Q psy16902 5 KRKIHFEARI-EPVGDPSMRVDWFINGRPLPASSRATTTFKFGF--ISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 5 g~~~~l~C~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~y~C~~ 67 (90)
|+++.|.|.+ . +.+...+.|++++................. ..|.|.++...|.|.|.|.+
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999998 5 788899999999865443322222211111 12899999999999999975
No 98
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.30 E-value=7.8e-11 Score=53.42 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=48.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEc-CC-------------CCceEEEE---eCCeEEEEEcCCCCCCCeEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPL-PA-------------SSRATTTF---KFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~-~~-------------~~~~~~~~---~~~~~~~~~~~~~~~~~g~y~C 65 (90)
..|++++|.|... +.+.+.+.|+++++.. .. .+++.... ..+...|.|.++..+|.|.|.|
T Consensus 5 ~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 5 KKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred eCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4699999999987 8889999999765321 11 11222211 2233569999999999999999
Q ss_pred EEEcCCcc
Q psy16902 66 RVTNNSGS 73 (90)
Q Consensus 66 ~~~~~~~~ 73 (90)
.+.+..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99887543
No 99
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.29 E-value=4.1e-10 Score=51.41 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=61.0
Q ss_pred CCCceEEEEEEEccCCCCCcE-EEEeeCCEEcCCCCceEEEEeC-----CeEEEEEcCCCCCCCeEEEEEEEcCCcceEe
Q psy16902 3 PQKRKIHFEARIEPVGDPSMR-VDWFINGRPLPASSRATTTFKF-----GFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~ 76 (90)
..|+++.|.|.+. +.|+|. +.|.+++..+............ ..+.|.+.+++..+.|.|+|.+.|+......
T Consensus 16 ~~gE~~~L~V~ie--AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~ 93 (101)
T cd05860 16 NAGENLDLIVEYE--AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASV 93 (101)
T ss_pred ECCCCEEEEEEEE--eCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEE
Confidence 4699999999998 999998 9999988765433221122111 2357999999999999999999999988888
Q ss_pred EEEEEEe
Q psy16902 77 TALLSVQ 83 (90)
Q Consensus 77 ~~~l~v~ 83 (90)
.+.|.+.
T Consensus 94 tF~l~v~ 100 (101)
T cd05860 94 TFNVYVN 100 (101)
T ss_pred EEEEEEe
Confidence 8877764
No 100
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.29 E-value=6e-11 Score=52.70 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcc
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~ 73 (90)
..+|++++|.|... .+.+.+.+.|++++..+... .....+.+..+...|+|.|.|.+.+..+.
T Consensus 11 V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 11 VFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred ecCCCCEEEEeeCC-CCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCce
Confidence 46799999999874 23556789999998765321 11235899999999999999999998763
No 101
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=5.1e-11 Score=54.07 Aligned_cols=67 Identities=21% Similarity=0.352 Sum_probs=49.8
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEc--CCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPL--PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
.+|+.+.|.|.. +.+.|.+.+.|++++..+ ....+.......+ .|.+..+...|.|.|.|.+.|...
T Consensus 16 ~eG~~~~L~C~p-P~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 16 KEGWGVVLFCDP-PPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred eeCCcEEEeeCC-CCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEeccc
Confidence 468999999976 358899999999998653 2233333332122 489999999999999999998754
No 102
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.23 E-value=1.6e-09 Score=49.23 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=47.0
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEc--------CCCCceEEEE-eCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPL--------PASSRATTTF-KFGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.+|+++.|.|.+. +.+.+.+.|++.+..+ ....++.... ......|.|.++...|.|.|.|.+....
T Consensus 10 ~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 10 VEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred cCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 5699999999987 7788899998532210 1123443321 1233468999999999999999988764
No 103
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.21 E-value=1.3e-09 Score=56.71 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCCceEEEEEEEcc---CCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEP---VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~---~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
..|+++.|.|.+.. .+.|.|.+.|+++++.+....++..... ...|.+.++...|.|.|.|.+...
T Consensus 142 ~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 142 NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred ecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEe
Confidence 35889999998641 0235789999999999876666544322 236899999999999999998874
No 104
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.18 E-value=1e-09 Score=48.89 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=51.2
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEE-cCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVT-NNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~-~~~~~~~~~~~l~ 81 (90)
..|.++.|.|.. ..+...+.|++++..+..+.++..... .+.|..+...|.|.|.|.+. +.+-.......+.
T Consensus 9 ~~g~~v~L~C~~---~s~~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~ 81 (85)
T cd05872 9 APGADVVLPCQL---RSNLASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLN 81 (85)
T ss_pred ecCCCEEEECCC---CCCCccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEE
Confidence 468899999976 556789999999988765555443322 26788999999999999865 3333333333444
Q ss_pred E
Q psy16902 82 V 82 (90)
Q Consensus 82 v 82 (90)
+
T Consensus 82 v 82 (85)
T cd05872 82 V 82 (85)
T ss_pred E
Confidence 3
No 105
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.17 E-value=8.5e-10 Score=50.58 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=50.8
Q ss_pred CCCCceEEEEEEEcc---------CCCCCcEEEEeeCCEEcCCCCc-----eEEEEeCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 2 DPQKRKIHFEARIEP---------VGDPSMRVDWFINGRPLPASSR-----ATTTFKFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~---------~~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
..+|+.+.|.|+... .......+.|++++........ ....... ..+.+..+..+|+|.|.|.+
T Consensus 12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~--~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE--DSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC--CEEEEEeCChhhCeEEEEEE
Confidence 467999999998620 0122347899999744333211 1111122 25899999999999999999
Q ss_pred EcCCcceEeEEEEE
Q psy16902 68 TNNSGSAESTALLS 81 (90)
Q Consensus 68 ~~~~~~~~~~~~l~ 81 (90)
.|........+.|.
T Consensus 90 rN~t~C~~~~i~l~ 103 (104)
T cd05896 90 RNSTYCMKVSMSLT 103 (104)
T ss_pred CCCCcceEEEEEEE
Confidence 99876555555444
No 106
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.14 E-value=2.2e-10 Score=51.94 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=49.4
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEE-cCCCCceEEEEeCCeEEEEEcCCCCCCCe-EEEEEEEcCCc
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRP-LPASSRATTTFKFGFISLDLLSIVLHDSG-EYTVRVTNNSG 72 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~y~C~~~~~~~ 72 (90)
.+|+.+.|.|.. +.|.|.|.+.|+.++.. +....++.....+ .|.+.++...|.| .|.|.+.+...
T Consensus 16 ~eG~~~~L~C~p-P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 16 EEGDSVVLPCNP-PKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred ecCCCEEEEecC-CCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEEcccc
Confidence 469999999964 24999999999977644 3334454443333 4899999999999 79999998753
No 107
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.13 E-value=4.8e-09 Score=49.05 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCceEEEEEEEccCCCC------------CcEEEEeeCCE----E-c---------CC--CCceEEEE---eCCeEEEEE
Q psy16902 4 QKRKIHFEARIEPVGDP------------SMRVDWFINGR----P-L---------PA--SSRATTTF---KFGFISLDL 52 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~------------~~~~~w~~~~~----~-~---------~~--~~~~~~~~---~~~~~~~~~ 52 (90)
.|++++|.|... ... .+.+.|++... . + .. ..|+.+.. ......|.|
T Consensus 1 ~G~~VtLpC~~~--~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQ--DPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEe--CCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEE
Confidence 388999999886 322 46899987421 0 0 00 12333332 224567999
Q ss_pred cCCCCCCCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 53 LSIVLHDSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 53 ~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
.+++..|.|.|.|.+............|.|.+
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999999998776666666666653
No 108
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.12 E-value=1.6e-09 Score=47.38 Aligned_cols=58 Identities=31% Similarity=0.659 Sum_probs=45.1
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
..|+.+.|.|.+. +.|.+.+.|++++..+.... + .+.+..+...+.|.|.|.+.+..+
T Consensus 12 ~~g~~~~l~C~~~--~~p~~~~~w~~~~~~~~~~~--------~--~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 12 EEGDSVTLTCSVS--GNPPPQVQWYKNGSPINSSQ--------N--GLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp ETTSEEEEEEEEE--SSSSSEEEEEETTEEEEEES--------S--EEEESSEEGGGTEEEEEEEEETTE
T ss_pred eCCCcEEEEEEEE--cccceeeeeeeeeeeeeeee--------e--eeeeeeeccccCEEEEEEEEeCCC
Confidence 4689999999987 88889999999886654211 1 145577788899999999998654
No 109
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.12 E-value=2.3e-09 Score=58.46 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCCceEEEEEEEc---cCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 2 DPQKRKIHFEARIE---PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 2 ~~~g~~~~l~C~~~---~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
..+|+.+.+.|++. ..|.|.+.+.|++++.... +...... ...+.+......|.|.|.|.+.|..+......
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~--g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDN--GSNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccC--CceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 45689999999861 1278889999999974311 1111111 12467888899999999999999988777777
Q ss_pred EEEEec
Q psy16902 79 LLSVQG 84 (90)
Q Consensus 79 ~l~v~~ 84 (90)
.|.|..
T Consensus 113 ~L~V~~ 118 (326)
T PHA02785 113 NLTIVS 118 (326)
T ss_pred EEEEEe
Confidence 666643
No 110
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.05 E-value=4.2e-08 Score=45.39 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=52.8
Q ss_pred CCceEEEEEEEccCCC------CCcEEEEeeCC-----E-Ec--CCCCc------e--EEE---EeCCeEEEEEcCCCCC
Q psy16902 4 QKRKIHFEARIEPVGD------PSMRVDWFING-----R-PL--PASSR------A--TTT---FKFGFISLDLLSIVLH 58 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~------~~~~~~w~~~~-----~-~~--~~~~~------~--~~~---~~~~~~~~~~~~~~~~ 58 (90)
.|++++|.|.+. .. ..+.+.|++.. . .+ ..... + ... ...+..+|.|.+++..
T Consensus 1 ~G~~V~L~C~~~--~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s 78 (106)
T cd05714 1 LGGNVTLPCRFH--LEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE 78 (106)
T ss_pred CCCCEEEeEEeE--CCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH
Confidence 488999999986 33 35789998762 1 11 01110 0 111 1224567999999999
Q ss_pred CCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 59 DSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 59 ~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
|.|.|.|.+.+..+.......|.|.+
T Consensus 79 D~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred HCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999998877666666776654
No 111
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.04 E-value=4.5e-08 Score=44.51 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=48.4
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEc--------CCCCceEEEE-eCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPL--------PASSRATTTF-KFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.+|+++.|.|.+. ......+.|++.+..+ ....|+.... ......|.|..+...|.|.|.|.+...
T Consensus 10 ~~G~ta~L~C~v~--~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 10 VEGEVAIISCRVK--NNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred cCCCcEEEEEEEc--cCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4699999999997 6656667787655322 2345666554 344556999999999999999998764
No 112
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.03 E-value=1.1e-08 Score=46.49 Aligned_cols=70 Identities=16% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCCceEEEEEEE-ccC--CCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcc
Q psy16902 3 PQKRKIHFEARI-EPV--GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73 (90)
Q Consensus 3 ~~g~~~~l~C~~-~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~ 73 (90)
..|.+..|.|+- ... ..+.|.+.|++++..+........... +...|.+..+...|.|.|.|.+.+..+.
T Consensus 8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 357788899962 101 346789999999998765432211111 1235899999999999999999987543
No 113
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.03 E-value=3.1e-08 Score=43.80 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=41.4
Q ss_pred EEEEEEEccCC-CCCcEEEEeeCCEEcCCCCceEE-EEeCC----eEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 8 IHFEARIEPVG-DPSMRVDWFINGRPLPASSRATT-TFKFG----FISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 8 ~~l~C~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
+.|.|.+. + .|.+.+.|+++++.+........ ..... .+.+.+......+.+.|.|.+.+...
T Consensus 2 ~~L~C~v~--g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 2 YNLTCRAR--GAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred EEEEEEEe--CccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 57899987 5 68889999999987754321111 11111 23466666666677899999988643
No 114
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.03 E-value=1.1e-08 Score=45.04 Aligned_cols=65 Identities=6% Similarity=0.069 Sum_probs=45.4
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEE--EeCCeEEEEEcCCCCCCCeEEEEEEEcCCcc
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTT--FKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~ 73 (90)
+.|.|... .+.|++.+.||++++.+......... .......|.+......|.+.|.|.+.|..+.
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 67899875 57899999999999988643211000 0011234777777788889999999998654
No 115
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.00 E-value=5.3e-08 Score=45.04 Aligned_cols=79 Identities=18% Similarity=0.221 Sum_probs=52.6
Q ss_pred CCceEEEEEEEccCCC------CCcEEEEeeCCE------E--cCC----------CCceEEEEe-CCeEEEEEcCCCCC
Q psy16902 4 QKRKIHFEARIEPVGD------PSMRVDWFINGR------P--LPA----------SSRATTTFK-FGFISLDLLSIVLH 58 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~------~~~~~~w~~~~~------~--~~~----------~~~~~~~~~-~~~~~~~~~~~~~~ 58 (90)
+|++++|.|.+. .. ....+.|++... . +.. ..+..+... .+...|.|.++...
T Consensus 1 ~G~~vtL~C~~~--~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYH--YEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeE--CCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH
Confidence 488999999876 33 346799997531 0 000 122222111 22457999999999
Q ss_pred CCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 59 DSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 59 ~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
|.|.|.|.+.+..+.....+.|.|.+
T Consensus 79 DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 79 DYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred HCEEEEEEEEecccceEEEEEEEEEE
Confidence 99999999998877777666666643
No 116
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=1.8e-08 Score=46.40 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=48.3
Q ss_pred CCCCceEEEEEEEccCCC-CCcEEEEeeCCE-----Ec------------CCCCceEEEEeC--CeEEEEEcCCCCCCCe
Q psy16902 2 DPQKRKIHFEARIEPVGD-PSMRVDWFINGR-----PL------------PASSRATTTFKF--GFISLDLLSIVLHDSG 61 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~-----~~------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 61 (90)
..+|+++.|.|.+. .. +...+.|++... .+ ....++...... ....|.|.+++..|.|
T Consensus 3 v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 3 VSEGESVTLSCTYS--GSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred ecCCCCEEEEEEEe--CCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 45799999999987 54 667899987432 00 011233333222 4567999999999999
Q ss_pred EEEEEEEcCCc
Q psy16902 62 EYTVRVTNNSG 72 (90)
Q Consensus 62 ~y~C~~~~~~~ 72 (90)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 117
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.98 E-value=1.1e-08 Score=46.14 Aligned_cols=63 Identities=8% Similarity=0.095 Sum_probs=45.5
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
...|++++|.|.. ..+...+.|++++....... .........+.+..+...|.|.|.|...+.
T Consensus 13 V~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEec---CCCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4579999999975 45677788999886433210 011233446889999999999999998875
No 118
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.98 E-value=5.1e-08 Score=53.30 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCceEEEEEEEccCCCCC---cEEEEeeCCEEcCCCC-----ceEEEE-----e---CCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPS---MRVDWFINGRPLPASS-----RATTTF-----K---FGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~---~~~~w~~~~~~~~~~~-----~~~~~~-----~---~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
.|+.+.|.|.+. +.|. +.+.|.+|+..+.... +..... . .....|.|..++..|.|.|.|.+
T Consensus 234 ~G~~v~L~C~a~--g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A 311 (326)
T PHA02785 234 IGSNLTIACRVS--LRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMA 311 (326)
T ss_pred CCCcEEEEEEEE--CCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEE
Confidence 489999999997 7775 4799999998775321 111111 0 01236899999999999999999
Q ss_pred EcCCcc
Q psy16902 68 TNNSGS 73 (90)
Q Consensus 68 ~~~~~~ 73 (90)
.|..+.
T Consensus 312 ~n~~~~ 317 (326)
T PHA02785 312 FTIPSI 317 (326)
T ss_pred EeccCc
Confidence 997643
No 119
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.95 E-value=1.9e-08 Score=52.38 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=54.7
Q ss_pred CCCCceEEEEEEEccCCC-----------CCcEEEEeeCCEEc--C-CCCc---eEEEE---eCCeEEEEEcCCCCCCCe
Q psy16902 2 DPQKRKIHFEARIEPVGD-----------PSMRVDWFINGRPL--P-ASSR---ATTTF---KFGFISLDLLSIVLHDSG 61 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~-----------~~~~~~w~~~~~~~--~-~~~~---~~~~~---~~~~~~~~~~~~~~~~~g 61 (90)
..+|+.+.|.|.+. +. ..+.+.|++++... . ...+ ..... ......|.+.++...|.|
T Consensus 34 v~eGe~v~L~C~~~--~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG 111 (227)
T PHA02826 34 AKFGDPMVLLCTGK--HYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG 111 (227)
T ss_pred ecCCCCEEEEcccc--ccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence 35799999999875 43 34689999987541 1 1111 00000 011236899999999999
Q ss_pred EEEEEEEcCCcceEeEEEEEEec
Q psy16902 62 EYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 62 ~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
.|.|.+.|..+.......|.|..
T Consensus 112 ~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 112 IYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred EEEEEEEECCcceEEEEEEEEec
Confidence 99999999887777777776643
No 120
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.95 E-value=4.4e-08 Score=45.47 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=47.8
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEE------c--------CCCCceEEEEe--CCeEEEEEcCCCCCCCeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRP------L--------PASSRATTTFK--FGFISLDLLSIVLHDSGEYTVR 66 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~------~--------~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~y~C~ 66 (90)
.+|+++.|.|.+. +.+...+.|++.... + ....++..... .....|.|.+++..|.|.|.|.
T Consensus 11 ~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~ 88 (109)
T cd04983 11 QEGENVTLNCNYS--TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCA 88 (109)
T ss_pred cCCCCEEEEEEEC--CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEE
Confidence 4689999999987 667788999975321 0 01234444322 2456799999999999999999
Q ss_pred EEcCC
Q psy16902 67 VTNNS 71 (90)
Q Consensus 67 ~~~~~ 71 (90)
+.+..
T Consensus 89 ~~~~~ 93 (109)
T cd04983 89 LSESG 93 (109)
T ss_pred EecCC
Confidence 88653
No 121
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.93 E-value=1.5e-07 Score=43.96 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=52.4
Q ss_pred CCceEEEEEEEccCCCC----------CcEEEEeeCC--EE---c---------CC--CCceEEE---EeCCeEEEEEcC
Q psy16902 4 QKRKIHFEARIEPVGDP----------SMRVDWFING--RP---L---------PA--SSRATTT---FKFGFISLDLLS 54 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~----------~~~~~w~~~~--~~---~---------~~--~~~~~~~---~~~~~~~~~~~~ 54 (90)
.|++++|.|... ..+ ...+.|++.. +. + .. ..|+.+. ...+...+.|.+
T Consensus 1 ~G~~V~LpC~~~--~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFT--LPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEee--CCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECC
Confidence 388999999886 322 3668999752 11 0 00 0232221 112446799999
Q ss_pred CCCCCCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 55 IVLHDSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 55 ~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
++..|.|.|.|.+............|.|.+
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999987766667777777654
No 122
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.91 E-value=2e-07 Score=42.66 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=48.7
Q ss_pred CceEEEEEEEccCCC-CCcEEEEeeCCE--Ec---CC------------CCceEEEE---eCCeEEEEEcCCCCCCCeEE
Q psy16902 5 KRKIHFEARIEPVGD-PSMRVDWFINGR--PL---PA------------SSRATTTF---KFGFISLDLLSIVLHDSGEY 63 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~~~~~~w~~~~~--~~---~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~g~y 63 (90)
|+++.|.|...+... ....+.|++... .+ .. ..|..... ..+...|.|.+++..|.|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 678999998752111 124578877541 11 00 01222211 12345799999999999999
Q ss_pred EEEEEcCCcceEeEEEEEE
Q psy16902 64 TVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 64 ~C~~~~~~~~~~~~~~l~v 82 (90)
.|.+.+..+.......|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987766666666654
No 123
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.90 E-value=2.6e-07 Score=43.54 Aligned_cols=69 Identities=14% Similarity=0.195 Sum_probs=45.2
Q ss_pred CCceEEEEEEEccCC--CCCcEEEEee---------------CCEEcCC-----CCceEEEE--eCCeEEEEEcCCCCCC
Q psy16902 4 QKRKIHFEARIEPVG--DPSMRVDWFI---------------NGRPLPA-----SSRATTTF--KFGFISLDLLSIVLHD 59 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~--~~~~~~~w~~---------------~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~ 59 (90)
.|+++.|.|.+.+.. .+...+.|.. +++.... ..|..+.. ..+..++.|.+++..|
T Consensus 12 ~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD 91 (116)
T cd05879 12 VGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTD 91 (116)
T ss_pred cCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCccc
Confidence 489999999987211 2456899932 2332211 02333321 1234579999999999
Q ss_pred CeEEEEEEEcCCc
Q psy16902 60 SGEYTVRVTNNSG 72 (90)
Q Consensus 60 ~g~y~C~~~~~~~ 72 (90)
.|.|.|.+.|...
T Consensus 92 ~G~Y~C~v~n~p~ 104 (116)
T cd05879 92 NGTFTCDVKNPPD 104 (116)
T ss_pred CEEEEEEEEcCCC
Confidence 9999999998754
No 124
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.85 E-value=3.5e-07 Score=41.63 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=48.1
Q ss_pred ceEEEEEEEccCCCC---CcEEEEeeCCEE-------c--------CC--CCceEEEEeC-CeEEEEEcCCCCCCCeEEE
Q psy16902 6 RKIHFEARIEPVGDP---SMRVDWFINGRP-------L--------PA--SSRATTTFKF-GFISLDLLSIVLHDSGEYT 64 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~---~~~~~w~~~~~~-------~--------~~--~~~~~~~~~~-~~~~~~~~~~~~~~~g~y~ 64 (90)
+++.|.|... ..+ ...+.|++.... . .. ..+..+.... +...|.|.++...|.|.|.
T Consensus 1 ~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFP--VPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEee--CCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEE
Confidence 4689999886 433 456899975421 0 01 1122221111 3457999999999999999
Q ss_pred EEEEc-CCcceEeEEEEEE
Q psy16902 65 VRVTN-NSGSAESTALLSV 82 (90)
Q Consensus 65 C~~~~-~~~~~~~~~~l~v 82 (90)
|.+.. ..|.......|.|
T Consensus 79 C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEeCCCCcEEEEEEEEe
Confidence 99875 5577776666665
No 125
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.84 E-value=7.5e-08 Score=44.86 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCE--Ec------C----------CCCceEEEEeC-CeEEEEEcCCCCCCCeE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGR--PL------P----------ASSRATTTFKF-GFISLDLLSIVLHDSGE 62 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~--~~------~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 62 (90)
..+|++++|.|.+. + +.+.+.|++... .+ . ...++...... ....|.|.++..+|.|.
T Consensus 10 v~~G~~v~l~C~~~--~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~ 86 (110)
T cd05899 10 KGRGQSVTLRCSQT--S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAV 86 (110)
T ss_pred EcCCCcEEEEEEEC--C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEE
Confidence 35799999999986 5 678899997532 00 0 01233322221 34569999999999999
Q ss_pred EEEEEEcC
Q psy16902 63 YTVRVTNN 70 (90)
Q Consensus 63 y~C~~~~~ 70 (90)
|.|.+...
T Consensus 87 Y~Ca~~~~ 94 (110)
T cd05899 87 YLCASSLG 94 (110)
T ss_pred EEEEeeCC
Confidence 99998764
No 126
>KOG4222|consensus
Probab=98.83 E-value=2.9e-08 Score=60.68 Aligned_cols=82 Identities=27% Similarity=0.310 Sum_probs=63.0
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCC--CCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE-E
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPA--SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA-L 79 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~-~ 79 (90)
..|+.+.|.|.. +.+.|.|.+.|.+++..+.. .....+..++ .+.|.++...|.|+|.|++.|..|...... .
T Consensus 144 a~ge~avlEcgp-P~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~ 219 (1281)
T KOG4222|consen 144 AVGEEAVLECGP-PRGHPEPTVSWVKDGKPLDHYDVPIIALISGG---NLLISNVRKSDEGTYACVATNMVGERESIPAR 219 (1281)
T ss_pred cccceeEEeccC-CCCCCCCcceeecCCCccccccceeEEEecCC---cEEEeccccCCCceeeeeecccccccccccce
Confidence 348899999975 46889999999999988763 2333333333 388999999999999999999988666554 7
Q ss_pred EEEecCCCC
Q psy16902 80 LSVQGRREG 88 (90)
Q Consensus 80 l~v~~~~~~ 88 (90)
+.|.+.|.+
T Consensus 220 lsv~e~P~f 228 (1281)
T KOG4222|consen 220 LSVQEKPWF 228 (1281)
T ss_pred eeeccCCcc
Confidence 778777765
No 127
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.82 E-value=4.2e-07 Score=40.52 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=48.5
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
..|++++|.|...+...|.+.++|...+..... ....+...+.+..+...|+|.|.|.+....-.....+.+.|
T Consensus 12 L~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 12 LSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred ecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 358999999987522233458999865432111 00122335788899999999999999765445555556655
Q ss_pred e
Q psy16902 83 Q 83 (90)
Q Consensus 83 ~ 83 (90)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 4
No 128
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.79 E-value=1.3e-07 Score=42.94 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=42.5
Q ss_pred CCCCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy16902 1 MDPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69 (90)
Q Consensus 1 ~~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~ 69 (90)
+..+|++++|.|... . ..-.+.|++++...................+.|..+...+.|.|.|....
T Consensus 11 vV~~G~~VTL~C~~~--~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 11 VVPSGENVTLQCHSD--I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred ccCCCCeEEEEEecC--C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 356799999999764 2 44568899987542210000000112234589999999999999999753
No 129
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.79 E-value=1.7e-07 Score=44.00 Aligned_cols=65 Identities=11% Similarity=0.279 Sum_probs=45.8
Q ss_pred CCCceEEEEEEEccCC--CCCcEEEEeeCC--EE----c--C-----------CCCceEEEEeC--CeEEEEEcCCCCCC
Q psy16902 3 PQKRKIHFEARIEPVG--DPSMRVDWFING--RP----L--P-----------ASSRATTTFKF--GFISLDLLSIVLHD 59 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~--~~~~~~~w~~~~--~~----~--~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~ 59 (90)
.+|++++|.|.+. + .+.+.+.|++.. .. + . ...++...... ....|.|.++...|
T Consensus 11 ~~G~~v~l~C~~~--~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 88 (116)
T cd04982 11 EESKSVTISCKVS--GIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKED 88 (116)
T ss_pred CCCCCEEEEEEEe--CCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHH
Confidence 5699999999986 5 567789999742 11 0 0 12344444333 45679999999999
Q ss_pred CeEEEEEEEc
Q psy16902 60 SGEYTVRVTN 69 (90)
Q Consensus 60 ~g~y~C~~~~ 69 (90)
.|.|.|.+..
T Consensus 89 sg~Y~C~~~~ 98 (116)
T cd04982 89 SATYYCAYWE 98 (116)
T ss_pred CEEEEEEEec
Confidence 9999998764
No 130
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.78 E-value=5.6e-07 Score=41.72 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=43.1
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEc---------CC----------CCceEEEEeCCeEEEEEcCCCCCCCeE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPL---------PA----------SSRATTTFKFGFISLDLLSIVLHDSGE 62 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~---------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 62 (90)
..+|+++.|.|... ......+.|++..... .. ..|..+.. ..+|.|.++...|.|.
T Consensus 10 ~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~---ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 10 VAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP---NGSLLIQNVTQKDTGF 84 (105)
T ss_pred ccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC---CCcEEEecCCcccCEE
Confidence 35699999999643 3344588999863211 00 11222221 1269999999999999
Q ss_pred EEEEEEcCC
Q psy16902 63 YTVRVTNNS 71 (90)
Q Consensus 63 y~C~~~~~~ 71 (90)
|.|.+.+..
T Consensus 85 Y~~~v~~~~ 93 (105)
T cd05774 85 YTLQTITTN 93 (105)
T ss_pred EEEEEEeCC
Confidence 999998865
No 131
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.78 E-value=2.6e-07 Score=42.79 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCceEEEEEEEccCCCC-CcEEEEeeCCE-----EcC---------CCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDP-SMRVDWFINGR-----PLP---------ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
.+|++++|.|.+. +.. ...+.|++... .+. ...++..........|.|.++...|.|.|.|.+
T Consensus 13 ~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~ 90 (106)
T cd04980 13 SPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQ 90 (106)
T ss_pred CCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEE
Confidence 5799999999875 444 56789986431 110 012333332334456899999999999999998
Q ss_pred EcC
Q psy16902 68 TNN 70 (90)
Q Consensus 68 ~~~ 70 (90)
.+.
T Consensus 91 ~~~ 93 (106)
T cd04980 91 YGT 93 (106)
T ss_pred eCC
Confidence 653
No 132
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.78 E-value=3.8e-07 Score=41.64 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=45.7
Q ss_pred CCCCceEEEEEEEccCCC--CCcEEEEeeCCE--EcC------------CCCceEEEEeCCeEEEEEcCCCCCCCeEEEE
Q psy16902 2 DPQKRKIHFEARIEPVGD--PSMRVDWFINGR--PLP------------ASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~--~~~~~~w~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C 65 (90)
..+|+++.|.|... .. ....+.|++... .+. ...++..........|.|.+++..|.|.|.|
T Consensus 3 v~~G~~v~l~C~~~--~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 3 VSPGETVTITCTGS--SGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred cCCCCCEEEEEEEc--CCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 46799999999875 43 456689986432 110 0124444444455679999999999999999
Q ss_pred EEEc
Q psy16902 66 RVTN 69 (90)
Q Consensus 66 ~~~~ 69 (90)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 8765
No 133
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.76 E-value=8.6e-07 Score=41.43 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=51.8
Q ss_pred CceEEEEEEEc--cC---CCCCcEEEEeeCC-----EE----cCCC----------CceEEEE---eCCeEEEEEcCCCC
Q psy16902 5 KRKIHFEARIE--PV---GDPSMRVDWFING-----RP----LPAS----------SRATTTF---KFGFISLDLLSIVL 57 (90)
Q Consensus 5 g~~~~l~C~~~--~~---~~~~~~~~w~~~~-----~~----~~~~----------~~~~~~~---~~~~~~~~~~~~~~ 57 (90)
|.++.|.|... +. ....+.+.|.+.. .. +... .|..+.. ..+..++.+.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999865 11 1124789998641 11 1111 2333321 12356799999999
Q ss_pred CCCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 58 HDSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 58 ~~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
.|.|.|.|.+............|.|.+
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999998766666667777653
No 134
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.74 E-value=4.8e-07 Score=41.32 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=45.3
Q ss_pred CCCceEEEEEEEccCC-CCCcEEEEeeCCEEcC--C-----C------Cce--EEEEeCCeEEEEEcCCCCCCCeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVG-DPSMRVDWFINGRPLP--A-----S------SRA--TTTFKFGFISLDLLSIVLHDSGEYTVR 66 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~-~~~~~~~w~~~~~~~~--~-----~------~~~--~~~~~~~~~~~~~~~~~~~~~g~y~C~ 66 (90)
..|++++|.|... . .....+.|++....+. . . .++ +........+|.|.+++..|.|.|.|.
T Consensus 2 ~~G~sVtL~c~~~--~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIP--DGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCC--CCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence 3689999999764 3 4456789987643211 0 0 111 122223345799999999999999999
Q ss_pred EEcCCcc
Q psy16902 67 VTNNSGS 73 (90)
Q Consensus 67 ~~~~~~~ 73 (90)
+....+.
T Consensus 80 v~~~~~~ 86 (97)
T cd05775 80 INTKNGV 86 (97)
T ss_pred EEcCCCC
Confidence 8876543
No 135
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.70 E-value=8.6e-07 Score=39.88 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=43.5
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCC------------------CCceEEEEeCCeEEEEEcCCCCCCCeEEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPA------------------SSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~ 66 (90)
|++++|.|... ......+.|+++...... ..+..+. .+ .+|.|.+++..|.|.|.|.
T Consensus 1 G~~VtL~c~~~--~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~--~~-~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNL--PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY--PN-GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccC--CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc--CC-ceEEEccCCchhcEEEEEE
Confidence 78899999876 555668999876522110 0112221 22 4699999999999999999
Q ss_pred EEcCCc
Q psy16902 67 VTNNSG 72 (90)
Q Consensus 67 ~~~~~~ 72 (90)
+....+
T Consensus 76 v~~~~~ 81 (92)
T cd05741 76 IISTNG 81 (92)
T ss_pred EEcCCC
Confidence 887653
No 136
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.65 E-value=1.6e-06 Score=39.81 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=47.0
Q ss_pred eEEEEEEEccCCCC---CcEEEEeeCCE-----E---c-CC---------CCceEEEE--eCCeEEEEEcCCCCCCCeEE
Q psy16902 7 KIHFEARIEPVGDP---SMRVDWFINGR-----P---L-PA---------SSRATTTF--KFGFISLDLLSIVLHDSGEY 63 (90)
Q Consensus 7 ~~~l~C~~~~~~~~---~~~~~w~~~~~-----~---~-~~---------~~~~~~~~--~~~~~~~~~~~~~~~~~g~y 63 (90)
++.|.|... ... ...+.|++... . + .. ..+..+.. ......+.|.+++..|.|.|
T Consensus 2 ~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYN--VSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEe--cCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEE
Confidence 588999885 332 34788987321 0 0 00 02333332 22345699999999999999
Q ss_pred EEEEEc-CCcceEeEEEEEE
Q psy16902 64 TVRVTN-NSGSAESTALLSV 82 (90)
Q Consensus 64 ~C~~~~-~~~~~~~~~~l~v 82 (90)
.|.+.+ ..|.......|.|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999987 5666666666665
No 137
>PHA03376 BARF1; Provisional
Probab=98.63 E-value=2.3e-06 Score=43.39 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=45.6
Q ss_pred CCceEEEEEEEccC-CCCCcEEEEeeCCE----E-cC--C----------CCceEEEEeCCeEEEEEcCCCCCCCeEEEE
Q psy16902 4 QKRKIHFEARIEPV-GDPSMRVDWFINGR----P-LP--A----------SSRATTTFKFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 4 ~g~~~~l~C~~~~~-~~~~~~~~w~~~~~----~-~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C 65 (90)
.|+++.|.|...+. ..+...+.|++.+. . +. . ..+.......+..++.|.++..+|.|.|.|
T Consensus 25 VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C 104 (221)
T PHA03376 25 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC 104 (221)
T ss_pred eCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEE
Confidence 48899999987522 23556789999532 1 10 0 112222223456679999999999999999
Q ss_pred EEEcCCc
Q psy16902 66 RVTNNSG 72 (90)
Q Consensus 66 ~~~~~~~ 72 (90)
.++....
T Consensus 105 ~fQkge~ 111 (221)
T PHA03376 105 RMKLGET 111 (221)
T ss_pred EEEcCCC
Confidence 9887543
No 138
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.63 E-value=3.4e-06 Score=39.80 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 46 ~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
+..++.+.+++..|.|.|.|.+............|.|.+
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 346799999999999999999998877777777777654
No 139
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.60 E-value=2.2e-06 Score=39.10 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=47.7
Q ss_pred CceEEEEEEEccCCCCC-cEEEEeeCCE----Ec----C-C--------CCceEEE-EeCCeEEEEEcCCCCCCCeEEEE
Q psy16902 5 KRKIHFEARIEPVGDPS-MRVDWFINGR----PL----P-A--------SSRATTT-FKFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~-~~~~w~~~~~----~~----~-~--------~~~~~~~-~~~~~~~~~~~~~~~~~~g~y~C 65 (90)
|++++|.|... .... -.+.|++... .+ . . ..+.... .......|.|.++..+|.|.|.|
T Consensus 1 G~~vtL~C~~~--~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLT--LPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeC--CCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEE
Confidence 68899999865 3322 3689987421 10 0 0 0111111 12234579999999999999999
Q ss_pred EEEc-CCcceEeEEEEEE
Q psy16902 66 RVTN-NSGSAESTALLSV 82 (90)
Q Consensus 66 ~~~~-~~~~~~~~~~l~v 82 (90)
.+.. +.|.......|.|
T Consensus 79 ~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEeCCCCCeeeEEEEEE
Confidence 9775 4566666666665
No 140
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.58 E-value=4.7e-06 Score=42.09 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=55.0
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEEc----------CC--CCceEE-EEeCCeEEEEEcCCCCCCCeEEEEEEE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPL----------PA--SSRATT-TFKFGFISLDLLSIVLHDSGEYTVRVT 68 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~----------~~--~~~~~~-~~~~~~~~~~~~~~~~~~~g~y~C~~~ 68 (90)
+.+|+++.|.|... .+...+.+.|.+....+ .. ..|+.. ........+.+.++...|.|.|.|.+.
T Consensus 27 V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~ 105 (189)
T PHA02987 27 VSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFN 105 (189)
T ss_pred EcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEE
Confidence 35789999999873 24457889998863211 11 123321 222334569999999999999999877
Q ss_pred c-CCc-ceEeEEEEEEecCC
Q psy16902 69 N-NSG-SAESTALLSVQGRR 86 (90)
Q Consensus 69 ~-~~~-~~~~~~~l~v~~~~ 86 (90)
- +.| .......|.|.+..
T Consensus 106 tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 106 TLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred ecCCCCCceeEEEEEEEchh
Confidence 5 345 55666677776543
No 141
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.58 E-value=2.1e-06 Score=39.45 Aligned_cols=70 Identities=9% Similarity=0.119 Sum_probs=43.6
Q ss_pred CCCCCceEEEEEEEccCCCCCcE--EEEeeCCEEcCCCCceEE--EEeCCeEEEEEcCCCCCCCe-EEEEEEEcCCc
Q psy16902 1 MDPQKRKIHFEARIEPVGDPSMR--VDWFINGRPLPASSRATT--TFKFGFISLDLLSIVLHDSG-EYTVRVTNNSG 72 (90)
Q Consensus 1 ~~~~g~~~~l~C~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g-~y~C~~~~~~~ 72 (90)
++.+|+.++|.|.+. .+.|.+. +.|++++..+........ ........+.+. ....|.| .|.|.+.+...
T Consensus 12 ~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 12 WQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLR 86 (100)
T ss_pred cccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccC
Confidence 356899999999997 3466666 699999988754321110 001112234444 3444544 89999987654
No 142
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.57 E-value=2.7e-07 Score=39.68 Aligned_cols=58 Identities=21% Similarity=0.418 Sum_probs=37.9
Q ss_pred eEEEEEEEccCCCC-CcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy16902 7 KIHFEARIEPVGDP-SMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69 (90)
Q Consensus 7 ~~~l~C~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~ 69 (90)
.+.|.|.+. +.+ .+.+.|+ +....... ...........|.+..+...|.|.|.|.+.|
T Consensus 17 ~~~l~C~~~--~~~~~~~~~W~-~~~~~~~~--~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 17 SVTLTCSAE--GGPPPPSISWY-DSNPSFNS--NSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEES--SEESSEEEEEE-TEEEEEEE--EEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred eEEEEEEEc--cccCCeEEEEE-ecCCceee--eeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 389999987 666 7889999 11110000 0011122234688999999999999999875
No 143
>KOG4194|consensus
Probab=98.54 E-value=6e-07 Score=52.58 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=58.5
Q ss_pred CCCceEEEEEEEccCCCCC-cEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPS-MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 81 (90)
..|+++.+.|.+. +.|. |+..|++..+.+...++..+. .+..-+.+.....+|.|.|+|.+.+..|.......+.
T Consensus 719 ~~get~vlqC~a~--~~~a~pr~~W~k~d~pil~t~rh~f~--d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~ 794 (873)
T KOG4194|consen 719 VVGETLVLQCLAE--GAPADPRLEWFKEDKPILITERHTFP--DGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLL 794 (873)
T ss_pred EecceEEEEEecC--CCCCCccccccCCCCceEEeecccCC--CCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEE
Confidence 3588999999987 7776 999999998877665544433 2334577788889999999999999888777666554
Q ss_pred Ee
Q psy16902 82 VQ 83 (90)
Q Consensus 82 v~ 83 (90)
+.
T Consensus 795 ~~ 796 (873)
T KOG4194|consen 795 VY 796 (873)
T ss_pred Ee
Confidence 43
No 144
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.54 E-value=3.4e-06 Score=39.73 Aligned_cols=68 Identities=16% Similarity=0.284 Sum_probs=42.6
Q ss_pred CCCceEEEEEEEccCCCC----CcEEEEeeC----CE--Ec----C-----CC----CceEEEE--eCCeEEEEEcCCCC
Q psy16902 3 PQKRKIHFEARIEPVGDP----SMRVDWFIN----GR--PL----P-----AS----SRATTTF--KFGFISLDLLSIVL 57 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~----~~~~~w~~~----~~--~~----~-----~~----~~~~~~~--~~~~~~~~~~~~~~ 57 (90)
.+|+++.|.|... ..+ ...+.|++. +. .+ . .. .+..+.. ..+...+.|.+++.
T Consensus 11 ~~G~~v~L~C~~s--~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~~ 88 (115)
T cd05880 11 VNGTDVRLKCTFS--SSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQP 88 (115)
T ss_pred EcCCCEEEEEEEE--eCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCCh
Confidence 4699999999875 322 246899742 11 11 0 01 1111111 12345699999999
Q ss_pred CCCeEEEEEEEcCCc
Q psy16902 58 HDSGEYTVRVTNNSG 72 (90)
Q Consensus 58 ~~~g~y~C~~~~~~~ 72 (90)
.|.|.|.|.+.+...
T Consensus 89 ~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 89 TDNGTYTCQVKNPPD 103 (115)
T ss_pred hhCEEEEEEEEeCCC
Confidence 999999999997543
No 145
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.53 E-value=5.2e-06 Score=36.76 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=38.5
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCC----eEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFG----FISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
+.|.|.+. .+.|.+.+.|++++..+............+ .+.+.+......+.+.|.|.+.+...
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence 57899986 345888999999998875432111111111 12244333344455799999988643
No 146
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.51 E-value=4.3e-06 Score=38.68 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=43.3
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCEE----------cCC------------CCceEEEEeCCeEEEEEcCCCCCC
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRP----------LPA------------SSRATTTFKFGFISLDLLSIVLHD 59 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~----------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 59 (90)
...|++++|.|.+. ......+.|++.... +.. ..++......+...|.|..+..+|
T Consensus 3 v~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 3 AELGQKVELKCEVL--NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred ccCCCeEEEEEEec--CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 56799999999875 444456889864311 000 112222223345569999999999
Q ss_pred CeEEEEEEEc
Q psy16902 60 SGEYTVRVTN 69 (90)
Q Consensus 60 ~g~y~C~~~~ 69 (90)
.|.|.|.+..
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998763
No 147
>KOG4222|consensus
Probab=98.49 E-value=3.3e-07 Score=56.36 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=64.7
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEe
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 83 (90)
.|..+.+.|.+. |.|.|.+.|-+++..++.. ++.+..+ ...+.+.+....|.|.|.|.+.|..|.......+.|.
T Consensus 239 ~g~~~~f~c~v~--GdP~P~Vrwkk~~~~~P~~-ry~i~~d--~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ 313 (1281)
T KOG4222|consen 239 VGAAAEFDCRVG--GDPQPTVRWKKDDPSLPRS-RYSILDD--TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ 313 (1281)
T ss_pred cccccccccccC--CCCCCceeeeccCCCCCcc-ceeeeec--cccccccccCCCcccceeeeccccccccccccceEEe
Confidence 466788899987 9999999999977665543 3333322 2357889999999999999999999999999999999
Q ss_pred cCCCCC
Q psy16902 84 GRREGE 89 (90)
Q Consensus 84 ~~~~~~ 89 (90)
++|.+.
T Consensus 314 apP~f~ 319 (1281)
T KOG4222|consen 314 APPSFG 319 (1281)
T ss_pred cCcccc
Confidence 988764
No 148
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.47 E-value=7.8e-06 Score=36.26 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=40.8
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeC---CeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF---GFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
+.|.|.+. .+.|.+.+.|++++..+............ ..+.+.+..-...|...|.|.+.+..
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence 67899886 45688899999999988654221101111 23346665555555668999998864
No 149
>KOG4221|consensus
Probab=98.47 E-value=4.9e-06 Score=51.92 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=57.1
Q ss_pred CCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeE-EEEEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST-ALLSV 82 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~-~~l~v 82 (90)
.|+.+.|.|.+. +.+.|.+.|.++.+.+...+++.....+ .+.|..+...|.|.|.|.+.+..-..... ..+.+
T Consensus 154 ~g~ta~f~c~vn--~e~~p~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv 228 (1381)
T KOG4221|consen 154 YGQTALFSCEVN--AEPVPTIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTV 228 (1381)
T ss_pred cCCcEEEEEEEc--CccCceeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEe
Confidence 588899999997 8888999999999977776665444333 58999999999999999999864333322 34555
Q ss_pred e
Q psy16902 83 Q 83 (90)
Q Consensus 83 ~ 83 (90)
.
T Consensus 229 ~ 229 (1381)
T KOG4221|consen 229 L 229 (1381)
T ss_pred c
Confidence 4
No 150
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.46 E-value=1.6e-06 Score=39.25 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=42.6
Q ss_pred CCceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCCc-eEEE--EeCCe---EEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 4 QKRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASSR-ATTT--FKFGF---ISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
.|+.+.|.|.+. +. | ...+.|++++..+..... .... .+... +.+.+......+.+.|.|.+.+...
T Consensus 12 ~~~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 12 LGGSVTLTCLAT--GFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred cCCCeEEEEEEe--eEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 578899999997 75 4 467999999987754432 1111 11111 2244444444578999999988643
No 151
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.45 E-value=1.1e-05 Score=36.87 Aligned_cols=76 Identities=17% Similarity=0.322 Sum_probs=48.6
Q ss_pred ceEEEEEEEccCCCCCcEEEEeeCC----EEcC--C-----------CCceEEE-EeCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 6 RKIHFEARIEPVGDPSMRVDWFING----RPLP--A-----------SSRATTT-FKFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~~~~w~~~~----~~~~--~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
+++.|.|... .......++|.+.. ..+. . ..|..+. ......++.+.++...|.|.|.|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQ-VNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEec-CCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 4689999875 12234578997642 1110 0 0233222 1122346899999999999999998
Q ss_pred Ec-CCcceEeEEEEEE
Q psy16902 68 TN-NSGSAESTALLSV 82 (90)
Q Consensus 68 ~~-~~~~~~~~~~l~v 82 (90)
.. +.|.......|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 76 5688887777766
No 152
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.45 E-value=9.6e-06 Score=36.03 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=39.1
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCC------eEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFG------FISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
+.|.|.+. .+.|.+.+.|+++++.+..... ....... .+.+.+......+...|.|.+.+..
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 67899987 3458889999999988755322 1111111 1224443444456678999999864
No 153
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.44 E-value=1.1e-05 Score=38.02 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCCceEEEEEEEccCCC--CCcEEEEeeCCE------Ec---C-------CC----CceEEEE--eCCeEEEEEcCCCCC
Q psy16902 3 PQKRKIHFEARIEPVGD--PSMRVDWFINGR------PL---P-------AS----SRATTTF--KFGFISLDLLSIVLH 58 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~--~~~~~~w~~~~~------~~---~-------~~----~~~~~~~--~~~~~~~~~~~~~~~ 58 (90)
..|++++|.|.+..... ....+.|++... .+ . .. .|+.+.. ..+...|.|.+++..
T Consensus 11 ~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 90 (116)
T cd05715 11 VNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQFT 90 (116)
T ss_pred EcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCCcc
Confidence 36899999998851111 125689975321 10 0 01 1122211 122356999999999
Q ss_pred CCeEEEEEEEcCCc
Q psy16902 59 DSGEYTVRVTNNSG 72 (90)
Q Consensus 59 ~~g~y~C~~~~~~~ 72 (90)
|.|.|.|.+.+...
T Consensus 91 D~G~Y~C~v~~~~~ 104 (116)
T cd05715 91 DNGTYTCDVKNPPD 104 (116)
T ss_pred cCEEEEEEEEeCCC
Confidence 99999999987543
No 154
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.41 E-value=1.5e-05 Score=36.65 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCCCeEEEEEEEc-CCcceEeEEEEEE
Q psy16902 48 ISLDLLSIVLHDSGEYTVRVTN-NSGSAESTALLSV 82 (90)
Q Consensus 48 ~~~~~~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v 82 (90)
.++.+.+++..|.|.|.|.+.+ +.|.......|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 5799999999999999999999 5677777777765
No 155
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.36 E-value=1.8e-05 Score=35.17 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=38.7
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeC-----CeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF-----GFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
+.|.|.+. ...|...+.|++++..+............ ..+.+.+......+...|.|.+.+..
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 57899987 24677889999999987543211111111 12235554444455678999998754
No 156
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.35 E-value=1.4e-05 Score=37.62 Aligned_cols=65 Identities=20% Similarity=0.344 Sum_probs=44.3
Q ss_pred CCCceEEEEEEEccCCC-CCcEEEEeeCCE--E---c---------CCCCceEEEE--eCCeEEEEEcCCCCCCCeEEEE
Q psy16902 3 PQKRKIHFEARIEPVGD-PSMRVDWFINGR--P---L---------PASSRATTTF--KFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~--~---~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~y~C 65 (90)
..|++++|.|... .. ....+.|++... . + ....++.... ..+...|.|..+...|.|.|.|
T Consensus 12 ~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C 89 (116)
T cd07706 12 QVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFC 89 (116)
T ss_pred cCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEE
Confidence 5699999999875 33 456689987421 0 0 0123444432 2345679999999999999999
Q ss_pred EEEc
Q psy16902 66 RVTN 69 (90)
Q Consensus 66 ~~~~ 69 (90)
.+..
T Consensus 90 ~~~~ 93 (116)
T cd07706 90 ALST 93 (116)
T ss_pred EEEC
Confidence 9875
No 157
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.34 E-value=1.4e-05 Score=37.10 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=42.6
Q ss_pred CCCCceEEEEEEEccCCC-CCcEEEEeeCCEE---------c--CC-----------CCceEEE--EeCCeEEEEEcCCC
Q psy16902 2 DPQKRKIHFEARIEPVGD-PSMRVDWFINGRP---------L--PA-----------SSRATTT--FKFGFISLDLLSIV 56 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~-~~~~~~w~~~~~~---------~--~~-----------~~~~~~~--~~~~~~~~~~~~~~ 56 (90)
..+|++++|.|.+. .. ....+.|++.... + .. ..++... .......|.|.++.
T Consensus 3 v~~G~~vtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 3 VQTNNTVKLSCEAK--GISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EcCCCCEEEEEEEe--cCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 46799999999875 43 3457899864321 0 00 1233222 12234468999999
Q ss_pred CCCCeEEEEEEEc
Q psy16902 57 LHDSGEYTVRVTN 69 (90)
Q Consensus 57 ~~~~g~y~C~~~~ 69 (90)
.+|.|.|.|....
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999998753
No 158
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.34 E-value=1.4e-05 Score=33.23 Aligned_cols=62 Identities=29% Similarity=0.565 Sum_probs=42.0
Q ss_pred EEEEEEEccCCCCCcEEEEeeCCEEcCCCCce----EEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRA----TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 8 ~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
+.+.|.+. +.+...+.|++++......... ..........+.+......+.|.|.|.+.+..
T Consensus 1 ~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEec--CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36789886 6677889999987665432210 00111223458888888899999999988764
No 159
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.34 E-value=5.9e-06 Score=37.68 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEE-----c--------CCCCceEEEE--eCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRP-----L--------PASSRATTTF--KFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~-----~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
.+|++++|.|... .......+.|++.... + ....++.... ..+...|.+.+++.+|.|.|.|.+
T Consensus 5 ~~G~~vtl~C~~~-~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 83 (98)
T cd05716 5 ELGGSVTIPCPYP-PKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV 83 (98)
T ss_pred EeCCeEEEEeeCC-CCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence 4699999999875 1235567889875321 1 0113343321 133457999999999999999987
Q ss_pred EcC
Q psy16902 68 TNN 70 (90)
Q Consensus 68 ~~~ 70 (90)
...
T Consensus 84 ~~~ 86 (98)
T cd05716 84 GDD 86 (98)
T ss_pred ccC
Confidence 764
No 160
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.32 E-value=2.4e-05 Score=37.02 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCCceEEEEEEEccCCCC------CcEEEEeeCCEE-------c-CC---------CCceEEE--EeCCeEEEEEcCCCC
Q psy16902 3 PQKRKIHFEARIEPVGDP------SMRVDWFINGRP-------L-PA---------SSRATTT--FKFGFISLDLLSIVL 57 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~------~~~~~w~~~~~~-------~-~~---------~~~~~~~--~~~~~~~~~~~~~~~ 57 (90)
..|++++|.|... ... ...+.|++.... + .. ..|+... ...+...|.|.+++.
T Consensus 12 ~~G~~VtL~C~f~--~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~ 89 (119)
T cd05712 12 QEGLCVLIPCSFS--YPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQP 89 (119)
T ss_pred eccccEEEEEEee--CcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCCh
Confidence 4699999999764 211 345889875321 0 00 1233332 123456799999999
Q ss_pred CCCeEEEEEEEcC
Q psy16902 58 HDSGEYTVRVTNN 70 (90)
Q Consensus 58 ~~~g~y~C~~~~~ 70 (90)
.|.|.|.|.+...
T Consensus 90 ~Dsg~Y~C~~~~~ 102 (119)
T cd05712 90 EDSGKYFFRVELG 102 (119)
T ss_pred hhCeEEEEEEEcC
Confidence 9999999998764
No 161
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.29 E-value=2.6e-06 Score=41.31 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEecCCCC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRREG 88 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~~~~ 88 (90)
+|.+.+++..|.|.|.|.+.+..+.......|.+..+|.+
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v 41 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV 41 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce
Confidence 4788999999999999999988888888888888877765
No 162
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.18 E-value=6.9e-05 Score=34.65 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=44.3
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCE-----EcC----C----------CCceEEEEe--CCeEEEEEcCCCCCCCe
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGR-----PLP----A----------SSRATTTFK--FGFISLDLLSIVLHDSG 61 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~-----~~~----~----------~~~~~~~~~--~~~~~~~~~~~~~~~~g 61 (90)
..|+++.|.|... .......+.|++... .+. . ..+..+... .....|.+.+++..|.|
T Consensus 14 ~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG 92 (114)
T PF07686_consen 14 QEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSG 92 (114)
T ss_dssp ETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEE
T ss_pred ecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCE
Confidence 4699999999885 123456789987321 111 0 122222222 23567999999999999
Q ss_pred EEEEEEEcC
Q psy16902 62 EYTVRVTNN 70 (90)
Q Consensus 62 ~y~C~~~~~ 70 (90)
.|.|.+...
T Consensus 93 ~Y~C~v~~~ 101 (114)
T PF07686_consen 93 TYFCQVSTS 101 (114)
T ss_dssp EEEEEEEES
T ss_pred EEEEEEEEC
Confidence 999998876
No 163
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.12 E-value=7.3e-05 Score=32.53 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=36.6
Q ss_pred eEEEEEEEccCCCCC--cEEEEeeCCE-----Ec---C----------CCCceEEEEe--CCeEEEEEcCCCCCCCeEEE
Q psy16902 7 KIHFEARIEPVGDPS--MRVDWFINGR-----PL---P----------ASSRATTTFK--FGFISLDLLSIVLHDSGEYT 64 (90)
Q Consensus 7 ~~~l~C~~~~~~~~~--~~~~w~~~~~-----~~---~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~g~y~ 64 (90)
++.|.|.+. .... ..+.|++... .+ . ...++..... .+...|.|.+++..|.|.|.
T Consensus 1 ~v~l~C~~~--~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKAS--GFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEe--ccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEE
Confidence 367899876 3333 3688986431 00 0 1123333322 44567999999999999999
Q ss_pred EE
Q psy16902 65 VR 66 (90)
Q Consensus 65 C~ 66 (90)
|.
T Consensus 79 C~ 80 (81)
T smart00406 79 CA 80 (81)
T ss_pred Ec
Confidence 95
No 164
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.08 E-value=0.00011 Score=34.71 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCCCceEEEEEEEccCCCC--CcEEEEeeCCE--E---c---C-----------CCCceEEEEeC--CeEEEEEcCCCCC
Q psy16902 2 DPQKRKIHFEARIEPVGDP--SMRVDWFINGR--P---L---P-----------ASSRATTTFKF--GFISLDLLSIVLH 58 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~--~~~~~w~~~~~--~---~---~-----------~~~~~~~~~~~--~~~~~~~~~~~~~ 58 (90)
..+|++++|.|... ... ...+.|++... . + . ...++...... ....|.|.++..+
T Consensus 9 v~~G~~vtL~C~~~--~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~ 86 (117)
T cd04981 9 VKPGQSLKLSCKAS--GFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE 86 (117)
T ss_pred EcCCCCEEEEEEEe--CCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence 35799999999864 332 45688986421 1 1 0 01233333222 2346899999999
Q ss_pred CCeEEEEEEEc
Q psy16902 59 DSGEYTVRVTN 69 (90)
Q Consensus 59 ~~g~y~C~~~~ 69 (90)
|.|.|.|....
T Consensus 87 Dsa~YyCa~~~ 97 (117)
T cd04981 87 DTAVYYCARGL 97 (117)
T ss_pred HCEEEEEEEEc
Confidence 99999998764
No 165
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.07 E-value=0.00012 Score=33.22 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=36.7
Q ss_pred CceEEEEEEEccCCC-CC-cEEEEeeCCEEcCCCC---ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 5 KRKIHFEARIEPVGD-PS-MRVDWFINGRPLPASS---RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~~-~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
++...|.|.+. |. |. ..+.|++++....... ......+..........+...+...|.|.+....
T Consensus 14 ~~~~~L~C~a~--gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHAT--GFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEE--EEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 56799999997 74 43 3789999986332211 1111111222222222333346789999988753
No 166
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.03 E-value=0.00014 Score=32.52 Aligned_cols=67 Identities=18% Similarity=0.328 Sum_probs=39.9
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEE-EeCC----eEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTT-FKFG----FISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
|+.+.+.|.+. .+.|.|.+.|+.++..+......... ...+ .+.+.+......+...+.|.+.+...
T Consensus 14 ~~~~~~~C~s~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSS-GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEE-EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeC-CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 56899999775 47889999999998765111000000 0111 12355554444466789999988643
No 167
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.97 E-value=0.0002 Score=32.58 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=37.0
Q ss_pred CCceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCC---ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 4 QKRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASS---RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.++..+|.|.+. |. | ...+.|++++..+.... ......+..........+...+...|.|.+....
T Consensus 13 ~~~~~~L~C~~~--gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 13 LSHPHLLVCHVW--GFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred CCCCeEEEEEEe--eecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 467799999997 53 3 33679999998765431 1111111112221112223345568999987653
No 168
>PHA02633 hypothetical protein; Provisional
Probab=97.96 E-value=0.00012 Score=30.63 Aligned_cols=38 Identities=24% Similarity=0.142 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEecCC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRR 86 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~~ 86 (90)
.|.+..+..+|+|.|.|..+|..-....+..+.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 47888999999999999999987777777777776543
No 169
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.93 E-value=0.00026 Score=32.39 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=44.2
Q ss_pred ceEEEEEEEccCCCCCcEEEEeeCCE----EcC-----------CC--CceEEEE-eCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 6 RKIHFEARIEPVGDPSMRVDWFINGR----PLP-----------AS--SRATTTF-KFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~~~~w~~~~~----~~~-----------~~--~~~~~~~-~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
++++|.|... .......++|.+... .+. .. .|..... .....++.+.++...|.|.|.|.+
T Consensus 1 ~~vtL~C~~~-~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYP-KTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcC-CCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 4688999875 233456788976421 110 00 2222221 012346899999999999999998
Q ss_pred EcC-CcceEeEEE
Q psy16902 68 TNN-SGSAESTAL 79 (90)
Q Consensus 68 ~~~-~~~~~~~~~ 79 (90)
... .|...+...
T Consensus 80 ~t~P~g~~~~~i~ 92 (96)
T cd05889 80 VTYPQGSWEKVIE 92 (96)
T ss_pred EeCCCCCeEEEEE
Confidence 764 565555443
No 170
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.83 E-value=0.00041 Score=31.56 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=36.5
Q ss_pred CceEEEEEEEccCCC--CCcEEEEeeCCEEcCCCC--ceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 5 KRKIHFEARIEPVGD--PSMRVDWFINGRPLPASS--RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 5 g~~~~l~C~~~~~~~--~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
|+...|.|.+. |- +.-.+.|.+|+..+.... ......+..........+...+...|.|.+...
T Consensus 15 g~~~~L~C~a~--gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 15 GKPNVLNCYVT--GFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CCceEEEEEEE--EEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 44568999997 63 345579999998865211 111112222222222233445666899998764
No 171
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.76 E-value=0.00058 Score=31.15 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=34.8
Q ss_pred CceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCCc---eEEEEeCCe---EEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 5 KRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASSR---ATTTFKFGF---ISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
++..+|.|.+. |- | .-.+.|.+++..+..... .....+... +.+.+. ..+...|.|.+...
T Consensus 15 ~~~~tL~C~a~--gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~ 83 (94)
T cd05767 15 GEPNTLICFVD--NFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW 83 (94)
T ss_pred CCCeEEEEEEE--EEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence 44479999997 63 3 355799999987654211 111111211 123333 33456899998765
No 172
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.76 E-value=0.00068 Score=31.87 Aligned_cols=65 Identities=20% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCCceEEE-EeC-C---eEEEEEcCCCCCCC-eEEEEEEEcCC
Q psy16902 4 QKRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASSRATTT-FKF-G---FISLDLLSIVLHDS-GEYTVRVTNNS 71 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~-~~~-~---~~~~~~~~~~~~~~-g~y~C~~~~~~ 71 (90)
.|+.++|.|.+. +. | ...+.|++|+..+......... .+. . .+.+.+.. ...+. ..|.|.+....
T Consensus 20 ~g~~~tL~C~a~--gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 20 PGQSVNFTCSAH--GFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred CCCCEEEEEEEe--eEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 466789999987 53 4 3578999999887542111111 111 1 11233333 22333 35999988753
No 173
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.69 E-value=0.00065 Score=31.26 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCC---ceEEEEeCCeE---EEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 4 QKRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASS---RATTTFKFGFI---SLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.++.+.|.|.+. +. | ...+.|++++..+.... ......++... .+.+....-.+...|.|.+....
T Consensus 16 ~~~~~~L~C~~~--gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 16 KSGKATLVCLIN--DFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred cCCCcEEEEEEE--eEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 356789999997 53 3 45689999998764321 00111122221 23332222223568999987653
No 174
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.58 E-value=0.00052 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
+.|.+++|.|+.. ...+.|.+++..+...... +...+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~-----~~~i~W~~n~~~~~g~~~~----------~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLS-----GDDIKWKKNDQVSQGSDEK----------YLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCC-----CCCceEEeCCccCCCCCce----------EEeeccC-CCCceEEEEeCCC
Confidence 4588999999643 2228999998655442211 2222333 7789999987643
No 175
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.52 E-value=0.0014 Score=29.02 Aligned_cols=63 Identities=24% Similarity=0.424 Sum_probs=37.1
Q ss_pred CCceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCCceEEEE---eCCe---EEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 4 QKRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASSRATTTF---KFGF---ISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.++.+.|.|.+. +. | .-.+.|++++..+.......... ++.. +.+.+. ..+...|.|.+....
T Consensus 7 ~~~~~~L~C~v~--~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVS--GFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEE--EEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEE--EEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 377899999997 53 3 34689999998776542221111 1111 223443 334457999887653
No 176
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.36 E-value=0.0022 Score=27.82 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=34.7
Q ss_pred EEEEEEEccCCC-CC-cEEEEeeCCEEcCCCCc---eEEEEeCCe---EEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 8 IHFEARIEPVGD-PS-MRVDWFINGRPLPASSR---ATTTFKFGF---ISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 8 ~~l~C~~~~~~~-~~-~~~~w~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
++|.|.+. +. |. ..+.|++++..+..... .....+... +.+.+......+...|.|.+...
T Consensus 2 ~~L~C~a~--gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 2 ATLVCLVS--GFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred eEEEEEEE--eEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 57899987 64 33 57999999986433211 011111111 22444444445667899988764
No 177
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.21 E-value=0.0061 Score=29.62 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCceEEEEEEEccCCC-CC-cEEEEeeCCEEcCC----CCce-----EEEEeCCe---EEEEEcCCCCCCCeEEEEEEEc
Q psy16902 4 QKRKIHFEARIEPVGD-PS-MRVDWFINGRPLPA----SSRA-----TTTFKFGF---ISLDLLSIVLHDSGEYTVRVTN 69 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-~~-~~~~w~~~~~~~~~----~~~~-----~~~~~~~~---~~~~~~~~~~~~~g~y~C~~~~ 69 (90)
.|+.+.|.|.+. +. |. ..+.|++++..... .... ....++.. +.+.+......+...|.|.+..
T Consensus 52 ~~~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H 129 (139)
T cd05771 52 IEEPQTLICHIA--GYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSH 129 (139)
T ss_pred cCCcEEEEEEEC--CCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEc
Confidence 467789999997 64 43 47999998753211 0011 00111111 2344443333445689999876
Q ss_pred C
Q psy16902 70 N 70 (90)
Q Consensus 70 ~ 70 (90)
.
T Consensus 130 ~ 130 (139)
T cd05771 130 V 130 (139)
T ss_pred C
Confidence 5
No 178
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.20 E-value=0.005 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=21.9
Q ss_pred CceEEEEEEEccCCCCC--cEEEEeeCCEEcCC
Q psy16902 5 KRKIHFEARIEPVGDPS--MRVDWFINGRPLPA 35 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~--~~~~w~~~~~~~~~ 35 (90)
++.++|.|.+. |..+ -.+.|++++..+..
T Consensus 16 ~~~~tL~C~a~--gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 16 QETATLTCLVK--GFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CCceEEEEEEe--eEeCCCCEEEEEECCEECCc
Confidence 56899999997 6433 35799999987643
No 179
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.18 E-value=0.005 Score=28.16 Aligned_cols=63 Identities=11% Similarity=0.041 Sum_probs=35.5
Q ss_pred ceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEE-E-eCC---eEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTT-F-KFG---FISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
+...+.|... .|.|.+.+.|+++. ......... . ++. .+.+.+......+...+.|.+.+...
T Consensus 16 ~~~va~C~s~-~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 16 PVTVATCVSA-NGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred ccEEEEEECC-CCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3567789874 58899999999871 111000110 0 111 12344444444455689999988653
No 180
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.16 E-value=0.0053 Score=28.11 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=38.2
Q ss_pred ceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCC---eEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 6 ~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
+.+.+.|... .+.|.+.+.|+.+...... .......+.. .+.+.+......+...+.|.+.+.........
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~ 89 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLL 89 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 3577889775 5789999999987211100 0000001111 12344434444455689999998754333333
No 181
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.08 E-value=0.0067 Score=27.83 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=21.1
Q ss_pred CceEEEEEEEccCCC-C-CcEEEEeeCCEEcCC
Q psy16902 5 KRKIHFEARIEPVGD-P-SMRVDWFINGRPLPA 35 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~ 35 (90)
+...+|.|.+. +- | .-.+.|.+++..+..
T Consensus 16 ~~~~tL~C~a~--gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 16 QGQGIYLCLLE--NFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred CCCEEEEEEEE--EEeCCCeEEEEEECCEECcC
Confidence 45689999997 53 3 345799999987543
No 182
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.94 E-value=0.0095 Score=27.18 Aligned_cols=65 Identities=20% Similarity=0.377 Sum_probs=35.3
Q ss_pred CceEEEEEEEccCCC-C-CcEEEEeeCCEEcCCCC---ceEEEEeCCe---EEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 5 KRKIHFEARIEPVGD-P-SMRVDWFINGRPLPASS---RATTTFKFGF---ISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~-~~~~~w~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
...+.|.|.+. |. | .-.+.|++++..+.... ......+... +.+.+....-.+...|.|.+....
T Consensus 14 ~~~~~L~C~a~--gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 14 SETIQLLCLIS--GYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCEEEEEEEE--eEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 34588999997 63 3 35689999998753221 0011111111 123333222224468999988754
No 183
>PHA02982 hypothetical protein; Provisional
Probab=96.70 E-value=0.03 Score=29.49 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=43.8
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCC-EEcC---------------CC---CceEEEEeCCeEEEEEcCCCCCCCeEEEE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFING-RPLP---------------AS---SRATTTFKFGFISLDLLSIVLHDSGEYTV 65 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~-~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~~g~y~C 65 (90)
++.+.|.|.. +.+.-..+..|..+. ..+. .. ....++...+.+.|.+.+++..+.|.|+|
T Consensus 39 d~~V~L~C~~-~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GCYtc 117 (251)
T PHA02982 39 DQEVKLQCLF-KDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGCFTC 117 (251)
T ss_pred CCcEEEEecC-CCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCceEE
Confidence 6789999974 334444567787643 1111 01 12233445667789999999999999999
Q ss_pred EEEcCC
Q psy16902 66 RVTNNS 71 (90)
Q Consensus 66 ~~~~~~ 71 (90)
.+....
T Consensus 118 ~~ks~~ 123 (251)
T PHA02982 118 EAKDAE 123 (251)
T ss_pred EEecCC
Confidence 998754
No 184
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.49 E-value=0.025 Score=25.94 Aligned_cols=25 Identities=12% Similarity=0.387 Sum_probs=19.2
Q ss_pred CceEEEEEEEccCCC--C-CcEEEEeeCCE
Q psy16902 5 KRKIHFEARIEPVGD--P-SMRVDWFINGR 31 (90)
Q Consensus 5 g~~~~l~C~~~~~~~--~-~~~~~w~~~~~ 31 (90)
++..+|.|.+. +. | ...++|.+++.
T Consensus 14 ~~~~tLtC~v~--gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 14 TKSVKLTCLVT--NLTSPEGVNVTWTRGSG 41 (96)
T ss_pred CCCeEEEEEEe--CCCCCCCcEEEEEECCe
Confidence 67899999998 55 3 34579999864
No 185
>KOG1480|consensus
Probab=96.44 E-value=0.0017 Score=39.67 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=46.6
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
+..+.+.|.. +.+.|...++|++++..+............ .+.+..+...+.|+|+|.+.|..+...
T Consensus 144 ~s~~~l~cr~-pe~~paae~~w~k~e~~~~pd~n~~~~~d~---~li~~~arlsd~~nytc~a~ni~~~r~ 210 (909)
T KOG1480|consen 144 ETTLQLPCRP-PEGDPKAEVEWLKNEVVIDPDANVIRASDH---NLIISQARLSDSGNYTCEATNIVAKRK 210 (909)
T ss_pred cccccccccC-cccchhhhhhccccCCCCCccccchhhhcC---Cccccchhhhhcccceeeeehhhcccc
Confidence 4456777765 357788889999998776654333222222 267778889999999999998765443
No 186
>KOG3515|consensus
Probab=96.40 E-value=0.0091 Score=36.71 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
+.|+++.|.|.+. .+.|...++|++.+.... .+.....+. .+..........+.|.|.+.|+.+
T Consensus 20 ~~g~~v~l~C~v~-~~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ns~~ 83 (741)
T KOG3515|consen 20 RLGEDVPLPCRVN-SNPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAFNSVG 83 (741)
T ss_pred ccCCcceeeeecC-CCCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhccccc
Confidence 5699999999987 234556799998875443 222111111 244445555556677787777643
No 187
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.29 E-value=0.035 Score=25.68 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=36.9
Q ss_pred CCCceEEEEEEEccCCCCC--cEEEEeeCCEEcCCCCceEE----EEeCCeEEEEEcCCCCCCCe-EEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPS--MRVDWFINGRPLPASSRATT----TFKFGFISLDLLSIVLHDSG-EYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~--~~~~w~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g-~y~C~~~~~ 70 (90)
..|..+++.|.+. ...|. ..+.|++....+........ ........+.+... .+|.| .|.|.+...
T Consensus 13 ~~G~~vtv~C~v~-~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 13 EEGKPVTVKCEVP-DVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cCCceEEEEEEec-CcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4589999999985 23444 56888877655443221110 00111223444443 55555 899987754
No 188
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.18 E-value=0.04 Score=25.21 Aligned_cols=27 Identities=7% Similarity=0.175 Sum_probs=20.3
Q ss_pred CCceEEEEEEEccCCCC--CcEEEEeeCCEE
Q psy16902 4 QKRKIHFEARIEPVGDP--SMRVDWFINGRP 32 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~--~~~~~w~~~~~~ 32 (90)
.++.++|.|.+. +.- .-.+.|.+++..
T Consensus 15 ~~~~~~L~C~a~--gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLAT--GFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEe--eEECCCcEEEEeECCEE
Confidence 355689999997 543 355799999986
No 189
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.08 E-value=0.054 Score=25.76 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=36.5
Q ss_pred CceEEEEEEEccCCC-CC-cEEEEeeCCEEcCCCCc---eEEEEe-CCe---EEEEEcCCCCCC-CeEEEEEEEcCCcc
Q psy16902 5 KRKIHFEARIEPVGD-PS-MRVDWFINGRPLPASSR---ATTTFK-FGF---ISLDLLSIVLHD-SGEYTVRVTNNSGS 73 (90)
Q Consensus 5 g~~~~l~C~~~~~~~-~~-~~~~w~~~~~~~~~~~~---~~~~~~-~~~---~~~~~~~~~~~~-~g~y~C~~~~~~~~ 73 (90)
+..++|.|.+. +. |. ..+.|++|+..+..... .....+ ... +.|.+....-.+ ...|.|.+......
T Consensus 18 ~~~~tL~Cla~--gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 18 KRKATLVCLAT--GFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred CCCcEEEEEEE--eEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 45689999997 53 33 47899999987654211 111111 111 123333322212 45799998865433
No 190
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.07 E-value=0.029 Score=27.24 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCceEEEEEEEcc---CCCCCcEEEEeeCCEEcC---CCCceE---------EE-EeCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 4 QKRKIHFEARIEP---VGDPSMRVDWFINGRPLP---ASSRAT---------TT-FKFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 4 ~g~~~~l~C~~~~---~~~~~~~~~w~~~~~~~~---~~~~~~---------~~-~~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
..+++.++|.+.. ...+...+.|..++..+. ...... +. ...+.++|.+...+.. .|+|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 4678999998751 012345689998887542 111111 00 0122334666554444 79999999
Q ss_pred EcCCcceEeEEEEEE
Q psy16902 68 TNNSGSAESTALLSV 82 (90)
Q Consensus 68 ~~~~~~~~~~~~l~v 82 (90)
............|..
T Consensus 105 t~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 105 TELSREGETTIELKY 119 (130)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EecCCCceEEEEEEE
Confidence 877666666665555
No 191
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.95 E-value=0.057 Score=24.92 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=36.3
Q ss_pred CCCceEEE-EEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCC---eEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 3 PQKRKIHF-EARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFG---FISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 3 ~~g~~~~l-~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.+|+.+.+ .|... .+.|.+.++|+.+...... .......++. .+.+.+......+...+.|.+....
T Consensus 14 ~~g~~~~vA~C~sa-~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 14 DGGNGTTLAACCAA-EGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred ecCcceeEEEEEcc-CCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 34666667 78764 6889999999976321110 0000000111 1224443444445668999988763
No 192
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.83 E-value=0.039 Score=29.96 Aligned_cols=49 Identities=22% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCCcEEEEeeC-CEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy16902 18 GDPSMRVDWFIN-GRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69 (90)
Q Consensus 18 ~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~ 69 (90)
....|...|... +..+....+..++..+ .|.+.+.....+|.|+|...-
T Consensus 9 E~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 9 ELIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred ccCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence 345788999864 5556666666655333 488899999999999998654
No 193
>KOG4597|consensus
Probab=95.73 E-value=0.038 Score=32.47 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=52.3
Q ss_pred CCceEEEEEEEccCCCCCcEEEEee---CCEEcCCCCceEEE--EeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWFI---NGRPLPASSRATTT--FKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
++++..+.|.+. |.+.+.+.|-+ +...+......... .-.+..-+.+.+....+.|-|.|.+.+..|.....+
T Consensus 210 ~wetcS~tCg~~--G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv 287 (560)
T KOG4597|consen 210 DWETCSSTCGVQ--GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDV 287 (560)
T ss_pred cchhhccccccc--CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeeccc
Confidence 467888999887 99999999953 32222111110000 011233477888899999999999999999888888
Q ss_pred EEEEe
Q psy16902 79 LLSVQ 83 (90)
Q Consensus 79 ~l~v~ 83 (90)
.+.+.
T Consensus 288 ~c~s~ 292 (560)
T KOG4597|consen 288 PCSSV 292 (560)
T ss_pred eeeee
Confidence 66654
No 194
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.67 E-value=0.061 Score=23.18 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=30.2
Q ss_pred CceEEEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEc
Q psy16902 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~ 69 (90)
...+.|.|.. .-.+.|+++....... ...+.+......-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~------~tsi~W~kG~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG------ATNITWKKGKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC------CCcEEEecCccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 4578999943 2449999944332221 11345555556668999997655
No 195
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.60 E-value=0.096 Score=24.98 Aligned_cols=67 Identities=7% Similarity=0.082 Sum_probs=40.5
Q ss_pred CCCceEEEEEEEccCCCCC-cEEEEeeCCE-E-------------cC-CCCceEEE--EeCCeEEEEEcCCCCCCCeEEE
Q psy16902 3 PQKRKIHFEARIEPVGDPS-MRVDWFINGR-P-------------LP-ASSRATTT--FKFGFISLDLLSIVLHDSGEYT 64 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~-~~~~w~~~~~-~-------------~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~g~y~ 64 (90)
.+|..+.|.|.+....... -.+.|++.-. . .. ...++... ...+...|.+.+++.+|.+.|.
T Consensus 11 ~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~Y~ 90 (115)
T cd05721 11 SSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDIYF 90 (115)
T ss_pred cCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeEEE
Confidence 4577899999886222333 4577876311 1 00 11222222 2344556999999999999999
Q ss_pred EEEEc
Q psy16902 65 VRVTN 69 (90)
Q Consensus 65 C~~~~ 69 (90)
|....
T Consensus 91 Ca~e~ 95 (115)
T cd05721 91 CKIEL 95 (115)
T ss_pred EEeee
Confidence 96543
No 196
>KOG3515|consensus
Probab=95.33 E-value=0.15 Score=31.81 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=42.6
Q ss_pred CCCceEEEEEEEccCCCCCcEEEEeeCCEEcCCCC----ceE----EEEeCCeEEEEEcCCCCCCCeEEEEEEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASS----RAT----TTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~~~~~w~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.++..+.+.|.....+.|.+.+.|..+.+...... ... .......+.+.+...+..+.|+|+|.+.+.
T Consensus 110 ~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr 185 (741)
T KOG3515|consen 110 VDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR 185 (741)
T ss_pred hcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence 34667888885554577889999998876432211 000 001011234666677788899999998873
No 197
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.26 E-value=0.12 Score=23.97 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=19.3
Q ss_pred CceEEEEEEEccCCCC-CcEEEEeeCCEE
Q psy16902 5 KRKIHFEARIEPVGDP-SMRVDWFINGRP 32 (90)
Q Consensus 5 g~~~~l~C~~~~~~~~-~~~~~w~~~~~~ 32 (90)
+..++|.|.+.....| ...+.|.+++..
T Consensus 19 ~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 19 GSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 5578999999822213 346899998764
No 198
>PHA03042 CD47-like protein; Provisional
Probab=94.88 E-value=0.31 Score=26.82 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCceEEEEEEEccCCC-----CCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEE
Q psy16902 4 QKRKIHFEARIEPVGD-----PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 78 (90)
..+++.++|.+. .. -...+.|..++..+.... ..+.+++.+.... .-.|+|+|.+.+.........
T Consensus 30 CN~TV~IpC~v~--n~~~~ni~~~~V~Wkf~~~~If~~n------~tn~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~I 100 (286)
T PHA03042 30 CNKTIVIVCNLN--LLIYYNISNIHINWKFNNKVIFKKN------NTNTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTI 100 (286)
T ss_pred cCceEEEEeecC--ChhhcCccceEEEEEeCCeeEEEec------CCcceEEEEeccc-cCCCceeEEEeecccCccEEE
Confidence 467889999874 21 356789998886542211 1122344443333 347999999887544333333
No 199
>PHA03052 Hypothetical protein; Provisional
Probab=93.10 E-value=0.34 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCceEEEEEEEccCCC--CCcEEEEeeCCEEc
Q psy16902 4 QKRKIHFEARIEPVGD--PSMRVDWFINGRPL 33 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~--~~~~~~w~~~~~~~ 33 (90)
.|.++++.|.+. .+. ..+.+.|..|+..+
T Consensus 11 lGs~ltI~Ckv~-lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 11 LGSNLTITCKVS-LRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccCCceEeEEEE-ecCCCcceEEEEEeCCcEE
Confidence 488999999886 333 35678999988765
No 200
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.70 E-value=0.65 Score=27.21 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=46.5
Q ss_pred CCCCceEEEEEEEccCCCC-CcEEEEeeCCEEcC-----------------CCCceEEEE------eCCeEEEEEcCCCC
Q psy16902 2 DPQKRKIHFEARIEPVGDP-SMRVDWFINGRPLP-----------------ASSRATTTF------KFGFISLDLLSIVL 57 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~-~~~~~w~~~~~~~~-----------------~~~~~~~~~------~~~~~~~~~~~~~~ 57 (90)
...|..+.+.|-....|.. ...+.|+.-+-++. ....+.+.. +-..+.|.+.+++.
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I 355 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI 355 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence 3458899999988754544 35678976543221 112222221 12245689999999
Q ss_pred CCCeEEEEEEEcCCcceE
Q psy16902 58 HDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 58 ~~~g~y~C~~~~~~~~~~ 75 (90)
.+.|.|.|.+....-...
T Consensus 356 ~N~GCY~~~a~~g~~~~e 373 (500)
T PHA02914 356 NNAGCYEAQAFMGKFKEE 373 (500)
T ss_pred EcCCceEEEEecCcchhh
Confidence 999999999887644333
No 201
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=87.75 E-value=3.7 Score=23.68 Aligned_cols=21 Identities=5% Similarity=0.257 Sum_probs=16.0
Q ss_pred eEEEEEEEccCCCCCc--EEEEeeC
Q psy16902 7 KIHFEARIEPVGDPSM--RVDWFIN 29 (90)
Q Consensus 7 ~~~l~C~~~~~~~~~~--~~~w~~~ 29 (90)
+++|.|.+. |--+. .+.|.++
T Consensus 216 ~~tL~C~A~--GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFD--SHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEE--eEeCCccEEEEEec
Confidence 478999998 65444 4689999
No 202
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=87.17 E-value=1.8 Score=19.31 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred EEEcCCCCCCCeEEEEEE-EcCCcceEeEEEEEE
Q psy16902 50 LDLLSIVLHDSGEYTVRV-TNNSGSAESTALLSV 82 (90)
Q Consensus 50 ~~~~~~~~~~~g~y~C~~-~~~~~~~~~~~~l~v 82 (90)
.........|.|.+.|.+ .+..-.......+.+
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 455667778999999999 555444444444443
No 203
>PHA03189 UL14 tegument protein; Provisional
Probab=82.56 E-value=7.1 Score=22.36 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=21.8
Q ss_pred CCCCCCCeEEEEEEEcCCcceEeEEEEEEe
Q psy16902 54 SIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83 (90)
Q Consensus 54 ~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 83 (90)
++.....|.|.|...|..+.......+.+.
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf~ivt 168 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRFVIVT 168 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEeeeee
Confidence 445567899999999988766666655554
No 204
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=78.95 E-value=4.9 Score=18.30 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCceEEEEEEEccCC---CCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEE
Q psy16902 3 PQKRKIHFEARIEPVG---DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~ 67 (90)
..|.+++..|.+...- .....+.|..++..++.. ++... +...+...+........-.|.|..
T Consensus 16 ~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~i-n~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 16 SLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVI-NDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEE-STTEEEEEESS--SSEEEEEEEEE
T ss_pred eCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-Hccee-CCeEEEEEEccCCCCCceEEEEEE
Confidence 4589999999885211 245678899888765553 33333 233355666666555444555553
No 205
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=73.37 E-value=8.7 Score=18.35 Aligned_cols=28 Identities=36% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 48 ISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 48 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
.+|.|..++..|+|.|.-.+.+..|...
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~ 98 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVC 98 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEE
Confidence 3689999999999999999988877653
No 206
>COG5475 Uncharacterized small protein [Function unknown]
Probab=67.87 E-value=8.5 Score=16.00 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.6
Q ss_pred CeEEEEEEEcCCcceEeE
Q psy16902 60 SGEYTVRVTNNSGSAEST 77 (90)
Q Consensus 60 ~g~y~C~~~~~~~~~~~~ 77 (90)
.|.|.|...+..+.....
T Consensus 28 ~Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 28 DGMYECRWFDGYGVKREA 45 (60)
T ss_pred CCeEEEEEecCCCccccc
Confidence 399999999887754443
No 207
>PHA03282 envelope glycoprotein E; Provisional
Probab=59.84 E-value=18 Score=22.22 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=18.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.|.+.+....++|.|.|++.-.
T Consensus 334 dL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 5888999999999999987643
No 208
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=58.25 E-value=17 Score=16.24 Aligned_cols=53 Identities=25% Similarity=0.434 Sum_probs=29.7
Q ss_pred EEEEEEccCCCCCcEEEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceE
Q psy16902 9 HFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75 (90)
Q Consensus 9 ~l~C~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 75 (90)
.+...+. +. .+.+.|+.|+..+....... .+ .+.....|.|...+....|...
T Consensus 33 ~l~l~a~--~~-~~~~~W~vdg~~~g~~~~~~--------~~---~~~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 33 PLVLKAA--GG-RGPVYWFVDGEPLGTTQPGH--------QL---FWQPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred eEEEEEe--CC-CCcEEEEECCEEcccCCCCC--------eE---EeCCCCCeeEEEEEEcCCCCEE
Confidence 3334444 44 45899999999874322110 11 1222356888887776666543
No 209
>KOG0613|consensus
Probab=57.66 E-value=3.6 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.3
Q ss_pred CCCCcEEEEeeCCEEcCCC
Q psy16902 18 GDPSMRVDWFINGRPLPAS 36 (90)
Q Consensus 18 ~~~~~~~~w~~~~~~~~~~ 36 (90)
|.|.+...|+.++..+...
T Consensus 215 gqp~~~~~~~~~g~~i~~~ 233 (1205)
T KOG0613|consen 215 GQPEPLERWEILGELIAPG 233 (1205)
T ss_pred CCCccchhhhhcccccCCC
Confidence 8899999999988766543
No 210
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=56.69 E-value=20 Score=16.56 Aligned_cols=75 Identities=11% Similarity=0.065 Sum_probs=42.3
Q ss_pred CCCCceEEEEEEEccCCCCCcE-EEEeeCCEEcCCCCceEEEEeCCeEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMR-VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l 80 (90)
...|.++.+.|.. .-+.|. +.|-..- .+.....+.+...+.+.++.. | ..-.|++............|
T Consensus 15 V~~G~Sv~VNCSt---sC~~p~~~GLET~L------~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~I 83 (91)
T PF03921_consen 15 VPPGGSVWVNCST---SCPQPEKIGLETSL------SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANI 83 (91)
T ss_dssp EETTEEEEEEEEE---SSSS-SEEEEESSS------EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEE
T ss_pred ECCCCCEEEEEcC---CCCCCCcceEEEec------CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEee
Confidence 3568899999976 344443 3332211 111222344555677777775 3 56789988765566666788
Q ss_pred EEecCCC
Q psy16902 81 SVQGRRE 87 (90)
Q Consensus 81 ~v~~~~~ 87 (90)
.|..+|.
T Consensus 84 tVY~~Pe 90 (91)
T PF03921_consen 84 TVYKPPE 90 (91)
T ss_dssp EEEB--S
T ss_pred EEeCCCC
Confidence 8877663
No 211
>PHA03283 envelope glycoprotein E; Provisional
Probab=50.27 E-value=63 Score=20.38 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEEec
Q psy16902 47 FISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQG 84 (90)
Q Consensus 47 ~~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 84 (90)
...++|.+....+.|.|+-..++..+.......+.|.+
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 34689999999999999999888766444445666654
No 212
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=45.67 E-value=35 Score=16.10 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=15.8
Q ss_pred eEEEEEEEccCCCCCcEEEEeeC
Q psy16902 7 KIHFEARIEPVGDPSMRVDWFIN 29 (90)
Q Consensus 7 ~~~l~C~~~~~~~~~~~~~w~~~ 29 (90)
...-.|... .|.|++.+.|..+
T Consensus 22 v~VA~CiSa-~GrPpa~ItW~t~ 43 (98)
T cd05890 22 MLVATCVSA-NGKPPSVVRWDTR 43 (98)
T ss_pred EEEEEEEcC-CCcCCcEeEEEcc
Confidence 344568753 6899999999743
No 213
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.61 E-value=49 Score=17.21 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
.+.+.+.+..|+|.|...+.-..
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECC
Confidence 48899999999999999887653
No 214
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=40.67 E-value=34 Score=14.62 Aligned_cols=18 Identities=22% Similarity=0.615 Sum_probs=12.4
Q ss_pred CCceEEEEEEEccCCCCCcEEEEe
Q psy16902 4 QKRKIHFEARIEPVGDPSMRVDWF 27 (90)
Q Consensus 4 ~g~~~~l~C~~~~~~~~~~~~~w~ 27 (90)
.|.+++|. |.+...+.|+
T Consensus 4 ~G~N~TL~------Gp~~~~V~Wy 21 (63)
T PF02440_consen 4 VGSNVTLV------GPPDGPVTWY 21 (63)
T ss_pred EcCcEEEe------CCCCCceEEE
Confidence 36677763 6665678998
No 215
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=39.74 E-value=17 Score=21.96 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=15.8
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.|.+.++...++|.|.|.+.-.
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEET
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 4888999999999999987643
No 216
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=37.94 E-value=36 Score=14.01 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=10.3
Q ss_pred CCeEEEEEEEcCCcc
Q psy16902 59 DSGEYTVRVTNNSGS 73 (90)
Q Consensus 59 ~~g~y~C~~~~~~~~ 73 (90)
.+..+.|.++|..|.
T Consensus 9 ssnsflctvqnkng~ 23 (65)
T PF13220_consen 9 SSNSFLCTVQNKNGD 23 (65)
T ss_pred CCCceEEEEecccHh
Confidence 345688988887653
No 217
>PHA03290 envelope glycoprotein I; Provisional
Probab=37.70 E-value=89 Score=18.53 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNN 70 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~ 70 (90)
.|.+.+....|+|.|...+.-.
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeC
Confidence 5888999999999999988765
No 218
>PHA03286 envelope glycoprotein E; Provisional
Probab=34.77 E-value=1.2e+02 Score=18.99 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCcceEeEE-EEEEe
Q psy16902 48 ISLDLLSIVLHDSGEYTVRVTNNSGSAESTA-LLSVQ 83 (90)
Q Consensus 48 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~-~l~v~ 83 (90)
..+.+.+....+.|.|.-...+..+...... .+.|.
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 4589999999999999999998866554444 55554
No 219
>PHA03271 envelope glycoprotein C; Provisional
Probab=28.28 E-value=1.2e+02 Score=18.83 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=21.2
Q ss_pred CCCceEEEEEEEccCCCCC--cEEEEeeCCEEcC
Q psy16902 3 PQKRKIHFEARIEPVGDPS--MRVDWFINGRPLP 34 (90)
Q Consensus 3 ~~g~~~~l~C~~~~~~~~~--~~~~w~~~~~~~~ 34 (90)
..|+...-.|.+. .-.|+ ..+.|+.|+....
T Consensus 258 L~Ge~YkAtC~vA-nYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 258 LSGENYKASCIVR-HFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred ccCCCceEEEEee-eecCCCceEEEEEeCCcccc
Confidence 4578888889875 12233 3578999987654
No 220
>PHA03291 envelope glycoprotein I; Provisional
Probab=28.11 E-value=1.4e+02 Score=17.96 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=24.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCcceEeEEEEEE
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 82 (90)
.|.+.+....|.|.|...+..........+.+.+
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~ 163 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATNASLFPLGL 163 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcccceEEEee
Confidence 4888899999999999998876444333333333
No 221
>PHA03289 envelope glycoprotein I; Provisional
Probab=27.08 E-value=1.4e+02 Score=17.67 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCc
Q psy16902 49 SLDLLSIVLHDSGEYTVRVTNNSG 72 (90)
Q Consensus 49 ~~~~~~~~~~~~g~y~C~~~~~~~ 72 (90)
.+.+.+....|+|.|...+.-...
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCC
Confidence 588899999999999998876533
No 222
>PHA03292 envelope glycoprotein I; Provisional
Probab=24.89 E-value=1.7e+02 Score=17.84 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCC
Q psy16902 48 ISLDLLSIVLHDSGEYTVRVTNNS 71 (90)
Q Consensus 48 ~~~~~~~~~~~~~g~y~C~~~~~~ 71 (90)
..+.+.+....|+|.|...+.-..
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCC
Confidence 358889999999999999887653
No 223
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=24.55 E-value=44 Score=12.36 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=6.3
Q ss_pred CCCeEEEEE
Q psy16902 58 HDSGEYTVR 66 (90)
Q Consensus 58 ~~~g~y~C~ 66 (90)
.+.|.|.|.
T Consensus 21 ~~dG~~yC~ 29 (36)
T PF11781_consen 21 SDDGFYYCD 29 (36)
T ss_pred ccCCEEEhh
Confidence 466888883
No 224
>PF15096 G6B: G6B family
Probab=24.23 E-value=85 Score=16.91 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=15.4
Q ss_pred CCCCCeEEEEEEEcCCcceEeEEEEEEe
Q psy16902 56 VLHDSGEYTVRVTNNSGSAESTALLSVQ 83 (90)
Q Consensus 56 ~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 83 (90)
...|+|+|.|..... ..+...+.|.
T Consensus 82 s~GDSGTFfCkGr~e---~ESRT~LhVL 106 (224)
T PF15096_consen 82 SAGDSGTFFCKGRQE---EESRTVLHVL 106 (224)
T ss_pred hcCCccceEecCccc---ccceeeeeee
Confidence 456999999985543 3333444544
No 225
>KOG1026|consensus
Probab=23.25 E-value=85 Score=20.97 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=22.6
Q ss_pred CCCCceEEEEEEEccCCCCCcEEEEeeCCE
Q psy16902 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGR 31 (90)
Q Consensus 2 ~~~g~~~~l~C~~~~~~~~~~~~~w~~~~~ 31 (90)
...+..+++.|... +.+.|...|+....
T Consensus 204 v~~~~~~~~~c~~~--~~~vp~~~~~~~~~ 231 (774)
T KOG1026|consen 204 VEEGSSITLKCSQA--GIPVPCHYWFPNCL 231 (774)
T ss_pred hcccchheeeeecc--cCCCcceeeecccc
Confidence 45677899999887 99999999987653
No 226
>PF10461 Peptidase_S68: Peptidase S68; InterPro: IPR019502 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry contains serine peptidases belonging to MEROPS peptidase family S68 (PIDD auto-processing protein, clan S-). These proteins are known as Pidd (short for p53-induced protein with a death domain) proteins. Pidd forms a complex with Raidd and procaspase-2 that is known as the 'Piddosome'. The Piddosome forms when DNA damage occurs and either activates NF-kappaB, leading to cell survival, or caspase-2, which leads to apoptosis.
Probab=23.03 E-value=49 Score=12.28 Aligned_cols=8 Identities=25% Similarity=0.908 Sum_probs=5.4
Q ss_pred CcEEEEee
Q psy16902 21 SMRVDWFI 28 (90)
Q Consensus 21 ~~~~~w~~ 28 (90)
-|+++|+.
T Consensus 23 V~hFSWFl 30 (35)
T PF10461_consen 23 VPHFSWFL 30 (35)
T ss_pred ccccEEEE
Confidence 36788873
Done!