RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16902
(90 letters)
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 82.8 bits (205), Expect = 1e-22
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+ + +IE D S +V W+ R L S + T++ G L + I D G Y +
Sbjct: 18 HVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCK 76
Query: 67 VTNNSGSAESTALLSVQGRRE 87
V N+ G S A L V+G RE
Sbjct: 77 VVNDYGEDSSYAELFVKGVRE 97
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 78.1 bits (193), Expect = 8e-21
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
F ++ P+ V W+ NG L SS+ T G ++L++L DSG Y
Sbjct: 25 NTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82
Query: 67 VTNNSGSAESTALLSVQG 84
TN G A A L V G
Sbjct: 83 CTNYKGEASDYATLDVTG 100
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 70.4 bits (173), Expect = 9e-18
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-KFGFISLDLLSIVLHDSG 61
Q HF R+ G P +W+ NG + S R + + L + + DS
Sbjct: 18 GQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSA 75
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
V+ N +G S A L VQ +
Sbjct: 76 SIMVKAINIAGETSSHAFLLVQAK 99
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 70.0 bits (172), Expect = 1e-17
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
F + G+P W +G+ + + + G L++ DSG YT V
Sbjct: 24 AKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81
Query: 68 TNNSGSAESTALLSVQG 84
N++GS S+ L+++
Sbjct: 82 KNSAGSVSSSCKLTIKA 98
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 67.7 bits (166), Expect = 1e-16
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-KFGFISLDLLSIVLHDSG 61
+ + + R++ G+P V W N +P+ R + G L +L+ D+G
Sbjct: 18 REGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAG 75
Query: 62 EYTVRVTNNSGSAESTALLSVQG 84
YT + N G+ + A L V+G
Sbjct: 76 FYTCKAVNEYGARQCEARLEVRG 98
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 69.9 bits (171), Expect = 2e-16
Identities = 17/75 (22%), Positives = 28/75 (37%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
++V+W NG + S R T I L + +D G+Y + + + +
Sbjct: 27 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ 86
Query: 76 STALLSVQGRREGEV 90
T LS Q E
Sbjct: 87 KTVDLSGQAYDEAYA 101
Score = 65.7 bits (160), Expect = 5e-15
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF-GFISLDLLSIVLHDSG 61
+ + ++ + GDP V W N + L + F+ + + DSG
Sbjct: 130 QEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 62 EYTVRVTNNSGSAESTALLSVQ 83
+Y + V N GS S +SV
Sbjct: 188 KYGLVVKNKYGSETSDFTVSVF 209
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 66.2 bits (162), Expect = 3e-16
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 2/77 (2%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+ E G P W + + K S+ S DSG Y ++
Sbjct: 19 THNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLK 76
Query: 67 VTNNSGSAESTALLSVQ 83
V N G E+ + VQ
Sbjct: 77 VKNELGEDEAIFEVIVQ 93
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 66.2 bits (162), Expect = 4e-16
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + G P R+ W +NG+P+ + T + G L + + D G YT
Sbjct: 29 FVLQCSVR--GTPVPRITWLLNGQPIQYARS---TCEAGVAELHIQDALPEDHGTYTCLA 83
Query: 68 TNNSGSAESTALLSVQ 83
N G +A ++V
Sbjct: 84 ENALGQVSCSAWVTVH 99
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 65.8 bits (161), Expect = 8e-16
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+ ++ G + W + + S L +L+ G YT+
Sbjct: 24 SVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLL 81
Query: 67 VTNNSGSAESTALLSVQGR 85
V N GS ++ L+V +
Sbjct: 82 VENKLGSRQAQVNLTVVDK 100
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 65.5 bits (160), Expect = 8e-16
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + G+P V W G+ L AS R + L L + + D+G Y R
Sbjct: 31 AELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRA 88
Query: 68 TNNSGSAESTALLSVQ 83
N +G A + A ++V
Sbjct: 89 RNAAGEAYAAAAVTVL 104
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 65.1 bits (159), Expect = 1e-15
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69
F + G+P V W G+ L S+R T + ++ S+ D G Y+V V N
Sbjct: 34 FSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91
Query: 70 NSGSAESTALLSVQ 83
+ G E+ L++Q
Sbjct: 92 SEGKQEAEFTLTIQ 105
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 67.2 bits (164), Expect = 4e-15
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
++V+W NG + S R T I L + +D G+Y + + + +
Sbjct: 132 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ 191
Query: 76 STALLSVQGRRE 87
T LS Q E
Sbjct: 192 KTVDLSGQAYDE 203
Score = 65.7 bits (160), Expect = 1e-14
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF-GFISLDLLSIVLHDSGEYTV 65
++ + GDP V W N + L + F+ + + DSG+Y +
Sbjct: 239 ALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGL 296
Query: 66 RVTNNSGSAESTALLSVQ 83
V N GS S +SV
Sbjct: 297 VVKNKYGSETSDFTVSVF 314
Score = 60.3 bits (146), Expect = 1e-12
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + ++ + W+ + R + + FK G +L + D+G Y V +
Sbjct: 24 VLLKCKVAN-IKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVIL 80
Query: 68 TNNSGSAESTALLSVQGRRE 87
++ G +S L + +E
Sbjct: 81 KDDRGKDKSRLKLVDEAFKE 100
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 66.7 bits (163), Expect = 4e-15
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+H E ++ G P +V W + R L + + + S+ +L++ D GEY +
Sbjct: 210 VHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 68 TNNSGSAESTALLSVQG 84
+N+ GS ++++
Sbjct: 268 SNDVGSYTCVGSITLKA 284
Score = 64.8 bits (158), Expect = 3e-14
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
F+ + G +++ W + R + T +L +L + D+G+YT
Sbjct: 23 GTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 68 TNNSGSAESTALLSVQ 83
+N +G +A L VQ
Sbjct: 81 SNVAGKDSCSAQLGVQ 96
Score = 61.3 bits (149), Expect = 4e-13
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+E +I G P ++V W+ + + SS+ +F L++ ++ + DSG+YT
Sbjct: 117 TRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 68 TNNSGSAESTALLSVQ 83
N +GSA S+ L V+
Sbjct: 175 HNAAGSASSSTSLKVK 190
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 64.9 bits (158), Expect = 5e-15
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-KFGFISLDLLSIVLHDSGEYTVR 66
F+ ++E G P V WF + P+ S + + G SL + + D +YT +
Sbjct: 59 ARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116
Query: 67 VTNNSGSAESTALLSVQGRRE 87
N+ G A TA L V+ +
Sbjct: 117 AVNSLGEATCTAELLVETMGK 137
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 65.5 bits (160), Expect = 5e-15
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
Q ++ + R+ G P+ V ++ +G + +S + + SL + DSG
Sbjct: 116 RQGSQVRLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGT 173
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
Y+V TN+ G A STA L VQ
Sbjct: 174 YSVNATNSVGRATSTAELLVQ 194
Score = 63.2 bits (154), Expect = 3e-14
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRV 67
FEA I G P V WF +G+ + S+ F G L + ++ +SG Y+++
Sbjct: 25 FEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKA 82
Query: 68 TNNSGSAESTALLSVQGRRE 87
TN SG A STA L V+
Sbjct: 83 TNGSGQATSTAELLVKAETA 102
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 63.1 bits (154), Expect = 7e-15
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSR--ATTTFKFGFISLDLLSIVLHDSGEYTV 65
+ F R+ G+P ++ WF +G+ + S G SL + L D G YT+
Sbjct: 26 VTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83
Query: 66 RVTNNSGSAESTALLSVQGRREG 88
N G T L VQ G
Sbjct: 84 MAANPQGRISCTGRLMVQAVNSG 106
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 64.7 bits (158), Expect = 1e-14
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+I G P + W+ G+ L S + + +L +++ D G YT
Sbjct: 25 AQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82
Query: 68 TNNSGSAESTALLSVQ 83
TN G E+++ L +Q
Sbjct: 83 TNEVGEVETSSKLLLQ 98
Score = 60.1 bits (146), Expect = 6e-13
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 11 EARIE--PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLH-DSGEYTVRV 67
R+ +G P + WF + L S T + L + ++ +G+Y V++
Sbjct: 120 TLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQL 179
Query: 68 TNNSGSAESTALLSVQGR 85
+N G+ ++ + +Q +
Sbjct: 180 SNVFGTVDAILDVEIQDK 197
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 66.4 bits (162), Expect = 1e-14
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+E +I G P ++V W+ + + SS+ +F L++ ++ + DSG+YT
Sbjct: 309 TRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 366
Query: 68 TNNSGSAESTALLSVQ 83
N +GSA S+ L V+
Sbjct: 367 HNAAGSASSSTSLKVK 382
Score = 63.7 bits (155), Expect = 9e-14
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G ++V W+ +G L + T+F +L +L G+Y +N G+A
Sbjct: 124 RINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTA 183
Query: 75 ESTALLSVQGR 85
S+A L++
Sbjct: 184 SSSAKLTLSEH 194
Score = 63.7 bits (155), Expect = 1e-13
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E G P +V W + R L + + + S+ +L++ D GEY + +N+ GS
Sbjct: 407 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSD 466
Query: 75 ESTALLSVQ 83
++++
Sbjct: 467 TCVGSITLK 475
Score = 62.9 bits (153), Expect = 2e-13
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65
I + +++ G P +R+ W+ L ++ FK SL + + D GEYT
Sbjct: 21 EPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTC 78
Query: 66 RVTNNSGSAESTALLSVQGRRE 87
+ N+ G+ S+A+L ++ R+
Sbjct: 79 KAENSVGAVASSAVLVIKERKL 100
Score = 61.4 bits (149), Expect = 7e-13
Identities = 16/67 (23%), Positives = 29/67 (43%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G +++ W + R + T +L +L + D+G+YT +N +G +
Sbjct: 223 GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS 282
Query: 78 ALLSVQG 84
A L VQ
Sbjct: 283 AQLGVQE 289
Score = 60.6 bits (147), Expect = 1e-12
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 18 GDPSMRVDWFINGRPL-PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G + V WF + + S ++ +L ++G+YT ++ N +G+ E
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Query: 77 TALLSVQ 83
A LSV
Sbjct: 563 FATLSVL 569
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 61.6 bits (150), Expect = 2e-14
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF-KFGFISLDLLSIVLHDSG 61
+ R + ++ G P+ V W++NGR + + + G SL + D+G
Sbjct: 18 DEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAG 75
Query: 62 EYTVRVTNNSGSAESTALLSVQGR 85
Y N +G A T L V +
Sbjct: 76 AYACVAKNRAGEATFTVQLDVLAK 99
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 60.8 bits (148), Expect = 7e-14
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFK-FGFISLDLLSIVLHDSGEYTVR 66
+ ++ G P+ + W ++G+P+ S + G SL + + D+G YT
Sbjct: 27 CRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84
Query: 67 VTNNSGSAESTALLSVQGRREG 88
TN +G + L V + G
Sbjct: 85 ATNRAGQNSFSLELVVAAKESG 106
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 60.5 bits (147), Expect = 1e-13
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTF--KFGFISLDLLSIVLHDSGEYTVRV 67
E +I P ++ W N + ++ + + G ++L + + D+G YTV
Sbjct: 35 LECQIS--AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92
Query: 68 TNNSGSAESTALLSVQGR 85
N +G L V R
Sbjct: 93 VNEAGVTTCNTRLDVTAR 110
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 59.6 bits (145), Expect = 1e-13
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASS--RATTTFKFGFISLDLLSIVLHDSGEY 63
+ + G+P+ V W GR + + R +L ++ + D G Y
Sbjct: 21 KVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLY 78
Query: 64 TVRVTNNSGSAESTALLSVQG 84
T+ + N GS +T + ++
Sbjct: 79 TLSLGNEFGSDSATVNIHIRS 99
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 60.0 bits (146), Expect = 1e-13
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P ++ WF + L S K G +L + + D G YT + + G A+
Sbjct: 36 GNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 93
Query: 78 ALLSVQGRRE 87
A ++G +E
Sbjct: 94 AFFIIEGAQE 103
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 62.9 bits (152), Expect = 2e-13
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P ++ WF + L S K G +L + + D G YT + + G A+
Sbjct: 692 GNPPPQIMWFKDNETLVEDSG--IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE 749
Query: 78 ALLSVQGRRE 87
A ++G +E
Sbjct: 750 AFFIIEGAQE 759
Score = 50.9 bits (121), Expect = 3e-09
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ A+ G P + W+ NG PL ++ L ++ + D+G YTV +
Sbjct: 348 VRIPAKYL--GYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVIL 400
Query: 68 TNNSGSAESTALLSVQ 83
TN + + ++S+
Sbjct: 401 TNPISKEKQSHVVSLV 416
Score = 47.8 bits (113), Expect = 4e-08
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ + + + R +P +R + K GF + S ++ +G
Sbjct: 141 NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISYAGM 197
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
N S +S + V
Sbjct: 198 VFCEAKINDESYQSIMYIVVV 218
Score = 45.5 bits (107), Expect = 3e-07
Identities = 9/87 (10%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPA--------SSRATTTFKFGFISLDLLSIVLH 58
K+ + + +W +++ + K +L + +
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300
Query: 59 DSGEYTVRVTNNSGSAESTALLSVQGR 85
D G YT ++ + +++ + V +
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEK 327
Score = 43.6 bits (102), Expect = 1e-06
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFIS-LDLLSIVLHDSGEYTVRVTNNSGSAES 76
G + W N T F L + ++ +D+G Y ++
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 77 TALLSVQGR 85
+
Sbjct: 115 YVYVQDYRS 123
Score = 39.0 bits (90), Expect = 6e-05
Identities = 8/73 (10%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 11 EARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
+ ++ W +N S+ ++L + L D G+Y +
Sbjct: 595 VGELPTPVCKNLDTLWKLNATMFSNSTNDILI-------MELKNASLQDQGDYVCLAQDR 647
Query: 71 SGSAESTALLSVQ 83
+ +
Sbjct: 648 KTKKRHCVVRQLT 660
Score = 38.6 bits (89), Expect = 8e-05
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAEST 77
+ V+ F G + + + ++ L I + S Y N G E
Sbjct: 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERV 542
Query: 78 ALLSVQ 83
V
Sbjct: 543 ISFHVT 548
Score = 29.0 bits (64), Expect = 0.19
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 54 SIVLHDSGEYTVRVTNNSGSAESTALLSV 82
S VL + T + + L +
Sbjct: 3 SKVLLAVALWLCVETRAASVGLPSVSLDL 31
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 60.7 bits (147), Expect = 4e-13
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + ++ + + W+ + R + + FK G +L + D+G Y V +
Sbjct: 134 VLLKCKVANI-KKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVIL 190
Query: 68 TNNSGSAESTALLSVQG 84
++ G +S L +
Sbjct: 191 KDDRGKDKSRLKLVDEA 207
Score = 55.3 bits (133), Expect = 4e-11
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFK--FGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ +V++ N + + + G I + + + D G YT ++ + +
Sbjct: 29 LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH 88
Query: 76 STALLSVQGRRE 87
ST +L ++
Sbjct: 89 STVVLVGDVFKK 100
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 61.5 bits (149), Expect = 4e-13
Identities = 14/75 (18%), Positives = 24/75 (32%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P W + S R K + + + D G Y+ VT+ G A
Sbjct: 26 DKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS 85
Query: 76 STALLSVQGRREGEV 90
S + + +R +
Sbjct: 86 SYLIDEEELKRLLAL 100
Score = 60.4 bits (146), Expect = 1e-12
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + ++ + W+ + R + + FK G +L + D+G Y V +
Sbjct: 239 VLLKCKVA-NIKKETHIVWYKDEREISVDEK--HDFKDGICTLLITEFSKKDAGIYEVIL 295
Query: 68 TNNSGSAESTALLSVQG 84
++ G +S L +
Sbjct: 296 KDDRGKDKSRLKLVDEA 312
Score = 59.6 bits (144), Expect = 2e-12
Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTF--KFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+ +V++ N + + + G I + + + D G YT ++ + +
Sbjct: 133 KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN 192
Query: 75 ESTALLSVQGRRE 87
ST +L ++
Sbjct: 193 HSTVVLVGDVFKK 205
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 58.2 bits (141), Expect = 4e-13
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 34 GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 77 TALLSV 82
T L V
Sbjct: 94 TYHLDV 99
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 57.8 bits (140), Expect = 7e-13
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG-----FISLDLLSIVLHDSGEYTVRVTNNSG 72
G+P + WF NG L S T L L + ++G+YT+ N G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 73 SAESTALLSVQGR 85
E G
Sbjct: 87 KDEKQISAHFMGW 99
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 58.3 bits (141), Expect = 7e-13
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 9 HFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF----KFGFISLDLLSIVLHDSGEYT 64
E + G+P + W NG+PL S + + L +++G YT
Sbjct: 24 CIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 65 VRVTNNSGSAESTALLSVQGR 85
+ N G+A T
Sbjct: 82 LIAKNPLGTANQTINGHFLKE 102
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 60.2 bits (146), Expect = 1e-12
Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
VG P V W L G L + DS YT ++ G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDD----MPVG--RNVLELTDVKDSANYTCVAMSSLGVI 281
Query: 75 ESTALLSVQGR 85
E+ A ++V+
Sbjct: 282 EAVAQITVKSL 292
Score = 52.5 bits (126), Expect = 7e-10
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSI----VLHDSGEY 63
F + GDP RV W G+ + + T F + +L I D Y
Sbjct: 24 ASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDES--AGAVLRIQPLRTPRDENVY 79
Query: 64 TVRVTNNSGSAESTALLSVQGRRE 87
N+ G A L+V +
Sbjct: 80 ECVAQNSVGEITVHAKLTVLREDQ 103
Score = 44.8 bits (106), Expect = 4e-07
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G+P + WF + P+ S+ + +L + S D G+Y TN++G
Sbjct: 131 AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVR 190
Query: 75 ES-TALLSVQGRRE 87
S A L V+ +
Sbjct: 191 YSSPANLYVRVQNV 204
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 60.0 bits (145), Expect = 2e-12
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRAT-TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P+ + W NGR R + SL + S+V D G YT V N GS
Sbjct: 149 GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208
Query: 77 TALLSVQGR 85
T L V R
Sbjct: 209 TYTLDVLER 217
Score = 46.1 bits (109), Expect = 2e-07
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 13/82 (15%)
Query: 15 EPVGDPSMRVDWF----INGRPLPASSR---------ATTTFKFGFISLDLLSIVLHDSG 61
+ D + W +NG + T L L ++ D+G
Sbjct: 245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304
Query: 62 EYTVRVTNNSGSAESTALLSVQ 83
EYT N+ G + +A L V
Sbjct: 305 EYTCLAGNSIGFSHHSAWLVVL 326
Score = 45.0 bits (106), Expect = 3e-07
Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P G P W +G L S R G L +L+ DSG Y+ R
Sbjct: 33 PGGGPMGPTVWVKDGTGLVPSER----VLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLC 88
Query: 76 STALLSVQGRREGE 89
++ G+
Sbjct: 89 HFSVRVTDAPSSGD 102
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 57.0 bits (138), Expect = 2e-12
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+++ + G P +V W G PL +SR + DSGEY +
Sbjct: 41 QLNLVVPFQ--GKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELS 97
Query: 67 VTNNSGSAESTALLSVQGR 85
V + +T + V +
Sbjct: 98 VQIENMKDTATIRIRVVEK 116
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 56.6 bits (137), Expect = 2e-12
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
FE + S W + G+ + +SSR T + L + D+GE
Sbjct: 25 SCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS 83
Query: 67 VTNNSGSAESTALLSVQGR 85
V + A L V+ R
Sbjct: 84 VRGLTSKAS----LIVRER 98
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 59.8 bits (145), Expect = 2e-12
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Query: 13 RIEPVGDPSMRVDWFINGRPLPASS--RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
+ +P + W + LPA + T + L++ +D G Y TN+
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 71 SGSAESTALLSVQGR 85
G+ +L++
Sbjct: 181 IGTRFQEYILALADV 195
Score = 48.3 bits (115), Expect = 2e-08
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 7/76 (9%)
Query: 15 EPVGDPSMRVDWFINGRPLPASS-------RATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ G+P + W + R + G SL + + L DSG Y
Sbjct: 23 DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 82
Query: 68 TNNSGSAESTALLSVQ 83
+ G + + L ++
Sbjct: 83 ASRIGGHQKSMYLDIE 98
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 59.4 bits (144), Expect = 2e-12
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLS-IVLHDSGEYTV 65
+ + G P + W + + F SL + + D+G Y V
Sbjct: 121 VVSIKIPF--SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 66 RVTNNSGSAESTALLSVQGR 85
N G + T L V
Sbjct: 179 CAKNRFGIDQKTVELDVADV 198
Score = 52.1 bits (125), Expect = 1e-09
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSR--ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
+ G P V W+ G+ + A FK G+ L + S+ D+ Y VR TN G
Sbjct: 27 KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG 86
Query: 73 SAESTALLSVQ 83
S TA L V+
Sbjct: 87 SVSGTASLEVE 97
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 59.5 bits (144), Expect = 3e-12
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69
F R+ P V W + R L S + + L + + D GEYTVR N
Sbjct: 502 FYCRVIASSPPV--VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN 559
Query: 70 NSGSAESTALLSV 82
+ G+ E L+V
Sbjct: 560 SYGTKEEIVFLNV 572
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 58.2 bits (141), Expect = 3e-12
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 10 FEARIEPVGDPSMRVDWFINGRPLPASSRAT--TTFKFGFISLDLLSIVLHDSGEYTVRV 67
++ G P V W+ G+ + A FK G+ L + S+ D+ Y VR
Sbjct: 24 LVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA 81
Query: 68 TNNSGSAESTALLSVQ 83
TN GS TA L V+
Sbjct: 82 TNQGGSVSGTASLEVE 97
Score = 56.3 bits (136), Expect = 2e-11
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 13 RIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNS 71
+I G P + W + + F SL + V D+G Y V N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 72 GSAESTALLSVQ 83
G + T L V
Sbjct: 185 GIDQKTVELDVA 196
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 55.9 bits (135), Expect = 4e-12
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ D ++W +G L S+R + +++ V DSG Y ++ SGS
Sbjct: 26 RLRDDVQSINWLRDGVQLAESNR----TRITGEEVEVQDSVPADSGLYACVTSSPSGSDT 81
Query: 76 STALLSVQ 83
+ ++V
Sbjct: 82 TYFSVNVS 89
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 55.4 bits (134), Expect = 5e-12
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
VG P WF N PL ++ + + L G Y V N+ S +S
Sbjct: 28 VGSPIPHYQWFKNELPLTHETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQDS 78
Query: 77 T-ALLSVQ 83
+ +
Sbjct: 79 KKVEIIID 86
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 55.8 bits (135), Expect = 5e-12
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+K F + P+ V W L AS + + + + L + ++ DS
Sbjct: 21 EEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDT 77
Query: 63 YTVRVTNNSGSAESTALLSVQGRREG 88
YT + G A+S A L VQGRR G
Sbjct: 78 YTCDI----GQAQSRAQLLVQGRRSG 99
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 57.3 bits (138), Expect = 8e-12
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI-------SLDLLSIVLHDSGEYTVRV 67
E G P WF +G +P + ++T F L + D+GEY+
Sbjct: 131 EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEA 190
Query: 68 TNNSGSAESTALLSVQGR 85
N G+ ++ + ++
Sbjct: 191 RNGYGTPMTSNAVRMEAV 208
Score = 37.6 bits (87), Expect = 1e-04
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--------SLDLLSIVLHDSGEYTVRVTN 69
G S RV+W + + + S+ D+G YT V+
Sbjct: 30 GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE 89
Query: 70 NSGSAESTALLSVQ 83
G++ + +
Sbjct: 90 EGGNSYGEVKVKLI 103
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 54.8 bits (132), Expect = 8e-12
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ D ++W +G L S+R T + +++ + DSG Y ++ SGS
Sbjct: 32 RLRDDVQSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDT 87
Query: 76 STALLSV 82
+ ++V
Sbjct: 88 TYFSVNV 94
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 57.9 bits (140), Expect = 1e-11
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G P + WF NG+ + + + L + +I+ D G Y R TN +G
Sbjct: 217 RASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGED 274
Query: 75 ESTALLSVQGR 85
E A L V +
Sbjct: 275 EKQAFLQVFVQ 285
Score = 46.3 bits (110), Expect = 1e-07
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+G+P + G + ++ R + L + + + D+G Y + T+ G
Sbjct: 27 TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 86
Query: 75 ES-TALLSVQ 83
+ T +L +
Sbjct: 87 QEATVVLEIY 96
Score = 40.2 bits (94), Expect = 2e-05
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS-GSAES 76
P+ V W + + S +L +L+I D G Y + G +
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDF 182
Query: 77 TALLSV 82
++ +
Sbjct: 183 RDIIVI 188
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 57.1 bits (138), Expect = 1e-11
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 14 IEPVGDPSMRVDWFINGRPLPASSRATTTFKF--GFISLDLLSIVLHDSGEYTVRVTNNS 71
E PS + WF +G+ LP+S+ + L++ +D G Y N
Sbjct: 40 CEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRI 99
Query: 72 GSAESTALLSVQGR 85
G +L
Sbjct: 100 GQESLEFILVQADT 113
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 54.6 bits (132), Expect = 1e-11
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
HFE + +P + W + G+PL AS L L + L +GE + +
Sbjct: 22 TAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQ 78
Query: 67 VTNNSGSAESTALLSVQ 83
N +A L V+
Sbjct: 79 AANTKSAAN----LKVK 91
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 54.7 bits (132), Expect = 1e-11
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
V V W+ +G+ L +SS+ L + ++GEY+ G +
Sbjct: 35 VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEA----GGQQL 90
Query: 77 TALLSVQGRREG 88
+ L V G+ G
Sbjct: 91 SFRLQVAGQCFG 102
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 55.9 bits (135), Expect = 2e-11
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G P + WF NG+ + + + L + +I+ D G Y R TN +G
Sbjct: 121 RASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGED 178
Query: 75 ESTALLSVQ 83
E A L V
Sbjct: 179 EKQAFLQVF 187
Score = 37.5 bits (87), Expect = 1e-04
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P+ V W + + S +L +L+I D G Y +
Sbjct: 28 SSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDF 86
Query: 78 ALLSV 82
+ V
Sbjct: 87 RDIIV 91
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 56.5 bits (136), Expect = 2e-11
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
G+P+ + W NGR R + SL + S+V D G YT V N GS
Sbjct: 38 PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS 97
Query: 74 AESTALLSVQGR 85
T L V R
Sbjct: 98 IRQTYTLDVLER 109
Score = 49.6 bits (118), Expect = 8e-09
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 12/85 (14%)
Query: 15 EPVGDPSMRVDWF-----------INGRPLPASSRATTTFKF-GFISLDLLSIVLHDSGE 62
+ D + W +G P ++ + + L L ++ D GE
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 63 YTVRVTNNSGSAESTALLSVQGRRE 87
Y R TN G AE LSV G R
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRA 221
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 56.4 bits (136), Expect = 2e-11
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
G+P + W NG+ R + SL + S+V D G YT V N GS
Sbjct: 42 PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS 101
Query: 74 AESTALLSVQGR 85
T L V R
Sbjct: 102 INHTYHLDVVER 113
Score = 50.3 bits (120), Expect = 4e-09
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 15 EPVGDPSMRVDWF-----------INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
+ D + W +G P + + L L ++ D+GEY
Sbjct: 141 KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEY 200
Query: 64 TVRVTNNSGSAESTALLSVQGRRE 87
+V+N G A +A L+V +++
Sbjct: 201 ICKVSNYIGQANQSAWLTVLPKQQ 224
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 57.0 bits (137), Expect = 2e-11
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65
+ F R + P +R W + + P + S+ H GEY
Sbjct: 342 EEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGLDNGY----SISKFCNHKHQPGEYIF 395
Query: 66 RVTNNSGSAESTALLSVQ 83
N+ L+++
Sbjct: 396 HAENDDAQFTKMFTLNIR 413
Score = 49.7 bits (118), Expect = 8e-09
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
++ W L G +S+ +L + +GEY + + + + +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132
Query: 78 ALLSVQGR 85
+S++
Sbjct: 133 FTVSIRNT 140
Score = 42.0 bits (98), Expect = 4e-06
Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG------FISLDLLSIVLHDSGEYTVRVTNNS 71
+ + W + + L + + + + S+ +D+G YT + +
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHP 313
Query: 72 GSAESTALLSVQGR 85
+AL+++ +
Sbjct: 314 S---QSALVTIVEK 324
Score = 39.3 bits (91), Expect = 4e-05
Identities = 11/78 (14%), Positives = 18/78 (23%), Gaps = 11/78 (14%)
Query: 18 GDPSMRVDWF-------INGRPLPASSRATTTFKFGFISLDLLSIV----LHDSGEYTVR 66
G P W + + F S +
Sbjct: 433 GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCC 492
Query: 67 VTNNSGSAESTALLSVQG 84
N+ G++ T LL+ G
Sbjct: 493 AYNSLGTSCETILLNSPG 510
Score = 37.8 bits (87), Expect = 2e-04
Identities = 5/65 (7%), Positives = 13/65 (20%), Gaps = 4/65 (6%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P V+W + + + + + + N G
Sbjct: 163 SESVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGREC 218
Query: 76 STALL 80
+
Sbjct: 219 TRLFT 223
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 56.0 bits (135), Expect = 3e-11
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 15 EPVGDPSMRVDWFINGRPLPASS---RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71
G+P + WF + P+ S+ R +L + D G+Y TN++
Sbjct: 131 AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Query: 72 GSAES-TALLSVQGRRE 87
G+ S A L V+G +
Sbjct: 191 GTRYSAPANLYVRGTKH 207
Score = 55.2 bits (133), Expect = 4e-11
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSI----VLHDSGEYTVRVTNNSGS 73
GDP ++ W G+ + F G S +L I D Y +NN G
Sbjct: 32 GDPRPKIVWNKKGKKVSNQRFEVIEFDDG--SGSVLRIQPLRTPRDEAIYECVASNNVGE 89
Query: 74 AESTALLSVQGRRE 87
+ L+V +
Sbjct: 90 ISVSTRLTVLREDQ 103
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 56.5 bits (136), Expect = 4e-11
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSR-----ATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69
G+P+ + W ++G+ + + R T L++ S+ +D G Y +
Sbjct: 452 VAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKS 511
Query: 70 NSGSAESTALLSVQGR 85
G AE +A L+V G
Sbjct: 512 KVGVAEHSAKLNVYGL 527
Score = 54.9 bits (132), Expect = 1e-10
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 15 EPVGDPS-MRVDWFINGRPLPASSRATTTFKFGFIS-LDLLSIVLHDSGEYTVRVTNNSG 72
G + +DW ++G+ + TT+ S L + ++ +G +T N +G
Sbjct: 642 SVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 73 SAESTALLSVQ 83
+ T L+V
Sbjct: 702 HQQFTTPLNVY 712
Score = 54.9 bits (132), Expect = 1e-10
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI---SLDLLSIVLHDSGEYTVRVTNNSGSA 74
G P +V W P + + +L + +I + G Y N GS
Sbjct: 740 GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSG 799
Query: 75 ESTA-LLSVQG 84
S ++SVQ
Sbjct: 800 LSAVIMISVQA 810
Score = 53.8 bits (129), Expect = 3e-10
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 369 GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEAS 418
Query: 78 ALLSVQGRRE 87
A L + GR +
Sbjct: 419 AELKLGGRFD 428
Score = 51.1 bits (122), Expect = 2e-09
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G P W+ + + +L + V+ DSG+Y V N+ G
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333
Query: 76 STALLSVQ 83
+L+V
Sbjct: 334 VETVLTVT 341
Score = 49.2 bits (117), Expect = 1e-08
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVL-HDSGEYTVRVTNNSG-SAE 75
G P + W + R LP + + G +L + ++ D YT N G SA
Sbjct: 552 GYPIDSIVWERDNRALPINRKQKVFPN-G--TLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 76 STALLSVQG 84
+ + V
Sbjct: 609 GSLEVQVMV 617
Score = 36.5 bits (84), Expect = 4e-04
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 12/83 (14%)
Query: 8 IHFEARIEPVGDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHD------S 60
E + G+P + W +G + G L D +
Sbjct: 57 AEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHA 112
Query: 61 GEYTVRVTNNSGSAES-TALLSV 82
Y N GS S +
Sbjct: 113 QVYACLARNQFGSIISRDVHVRA 135
Score = 33.0 bits (75), Expect = 0.007
Identities = 11/77 (14%), Positives = 16/77 (20%), Gaps = 10/77 (12%)
Query: 17 VGDPSMRVDWFINGRPLPASSRAT----TTFKFGFISLDLLSIVLHDS-GEYTVRVTNNS 71
V D V W + G L + + D Y R +
Sbjct: 166 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRL 223
Query: 72 GSAE---STALLSVQGR 85
+T V
Sbjct: 224 TGETRLSATKGRLVITE 240
Score = 26.8 bits (59), Expect = 0.87
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 50 LDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
+++ + L + GS A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAA 29
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 56.2 bits (135), Expect = 4e-11
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
Q + F R + P +R W + + P + S+ H GEY
Sbjct: 340 QYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEY 393
Query: 64 TVRVTNNSGSAESTALLSVQGR 85
N+ L+++
Sbjct: 394 IFHAENDDAQFTKMFTLNIRSG 415
Score = 50.4 bits (120), Expect = 4e-09
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
++ W L G +S+ +L + +GEY + + + + +
Sbjct: 74 APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTIL 132
Query: 78 ALLSVQGR 85
+S++
Sbjct: 133 FTVSIRNT 140
Score = 47.4 bits (112), Expect = 6e-08
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 18 GDPSMRVDWFINGRPLPASSRA------TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71
+ + W + + L + T + + S+ +D+G YT +
Sbjct: 254 VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK-- 311
Query: 72 GSAESTALLSVQGR 85
+AL+++ +
Sbjct: 312 -HPSQSALVTIVEK 324
Score = 39.7 bits (92), Expect = 3e-05
Identities = 5/65 (7%), Positives = 13/65 (20%), Gaps = 4/65 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P V+W + + + + + + N G +
Sbjct: 165 SVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220
Query: 78 ALLSV 82
Sbjct: 221 LFTID 225
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 56.0 bits (135), Expect = 5e-11
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P V W +G+PL + +R + L +VL DSG Y N G+ ++
Sbjct: 320 GKPRPAVRWLRDGQPLASQNR----IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYAS 375
Query: 78 ALLSVQG 84
A L+VQ
Sbjct: 376 AELTVQA 382
Score = 47.5 bits (113), Expect = 4e-08
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P ++ W + ++ L + ++ D G Y N G
Sbjct: 233 GNPVPQIKWRKLDGSQTSKWLSSEP------LLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Query: 78 ALLSVQ 83
+ +
Sbjct: 287 GRIIIH 292
Score = 41.4 bits (97), Expect = 8e-06
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAES 76
+P W +NG L + G L + + V D+G Y TN G+ S
Sbjct: 33 ANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCVATNARGTVVS 90
Query: 77 -TALLSVQGRRE 87
A L +E
Sbjct: 91 REASLRFGFLQE 102
Score = 38.7 bits (90), Expect = 6e-05
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 16 PVGDPSMRVDWFINGRP--LPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
P P++ W +N P +PA R + G +L + D G Y+ T++
Sbjct: 126 PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDF 183
Query: 74 AESTALLSV 82
+
Sbjct: 184 ITKSVFSKF 192
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 53.2 bits (128), Expect = 6e-11
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
+ ++ + P V W +G + S + L L ++ L DSGEY
Sbjct: 27 RLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 64 TVRVTNNSGSAESTALLSVQGR 85
+ ++ ++V
Sbjct: 84 LCEI----DDESASFTVTVTEP 101
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 54.4 bits (131), Expect = 7e-11
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G P + WF NG+ + + + L + +I+ D G Y R TN +G
Sbjct: 27 RASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGED 84
Query: 75 ESTALLSVQGR 85
E A L V +
Sbjct: 85 EKQAFLQVFVQ 95
Score = 51.0 bits (122), Expect = 2e-09
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 18 GDPSMRVDWFINGRPLPAS-------SRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
G+P + W + R + G SL + + L DSG Y +
Sbjct: 120 GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASR 179
Query: 71 SGSAESTALLSVQ 83
G + + L ++
Sbjct: 180 IGGHQKSMYLDIE 192
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 52.8 bits (127), Expect = 7e-11
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
GDP + W G P T + G +L + ++ + D+G YT T++SG
Sbjct: 33 TGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSW 90
Query: 77 TALLSVQG 84
+A+L V
Sbjct: 91 SAVLDVTE 98
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 55.3 bits (133), Expect = 9e-11
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+PS + W ING P + L + I +++G Y V+N + ++
Sbjct: 585 SNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYACFVSNLATGRNNS 633
Query: 78 ALLSVQ 83
+ S+
Sbjct: 634 IVKSIT 639
Score = 51.1 bits (122), Expect = 3e-09
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+P + W I+G + L + +I +SG YT + N++ T
Sbjct: 407 SNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRT 455
Query: 78 ALLSVQGRRE 87
+ ++ E
Sbjct: 456 TVKTITVSAE 465
Score = 48.4 bits (115), Expect = 2e-08
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 26 WFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES-TALLSVQ 83
W++NG+ LP S R + +L L ++ +D+ Y + N+ + S L V
Sbjct: 500 WWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVL 556
Score = 46.1 bits (109), Expect = 2e-07
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+P + WF+NG ++ L + +I +++SG YT + N+
Sbjct: 226 HAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 75 ESTALLSVQ 83
T + ++
Sbjct: 275 NRTTVTTIT 283
Score = 43.8 bits (103), Expect = 1e-06
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
EP + W++N + LP S R + +L LLS+ +D G Y + N
Sbjct: 312 EPEIQNT-TYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVD 368
Query: 75 ES-TALLSVQ 83
S +L+V
Sbjct: 369 HSDPVILNVL 378
Score = 41.9 bits (98), Expect = 6e-06
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 26 WFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES-TALLSVQ 83
W++N + LP S R + +L L ++ +D+ Y N + S + +L+V
Sbjct: 144 WWVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
V P PA S + SL + +I+ +D+G YT+ V + E
Sbjct: 49 VIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDLVNEE 99
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 55.2 bits (133), Expect = 9e-11
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P W NG PL R + +L++ + L D+G Y N G S+
Sbjct: 321 GRPKPTYRWLKNGDPLLTRDR----IQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Query: 78 ALLSVQG 84
A LSV
Sbjct: 377 AELSVIA 383
Score = 48.3 bits (115), Expect = 2e-08
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 18 GDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+P + W +G+P+ +R + L++ + D+G Y N+ G +
Sbjct: 231 GNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 77 TALLSVQ 83
L+
Sbjct: 287 KGQLTFY 293
Score = 43.7 bits (103), Expect = 9e-07
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P + W N P +R + + G +L + + D G YT VTN + +
Sbjct: 127 PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKSDVGNYTCVVTNTVTNHK 184
Query: 76 STA 78
Sbjct: 185 VLG 187
Score = 42.5 bits (100), Expect = 3e-06
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAES 76
G+P + W +NG + + G SL + + D+G Y TN+ G+ S
Sbjct: 34 GNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQCIATNSFGTIVS 91
Query: 77 -TALLSVQGRRE 87
A L
Sbjct: 92 REAKLQFAYLEN 103
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 55.2 bits (133), Expect = 9e-11
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P W + S+ + +L + ++ DSG YT VT + + ++
Sbjct: 247 GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISAS 304
Query: 78 ALLSVQ 83
A L+V
Sbjct: 305 AELTVL 310
Score = 54.8 bits (132), Expect = 1e-10
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ I FE + G P V+W NG + S +L +L +V D G
Sbjct: 325 YESMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVGG-S--NLRILGVVKSDEGF 379
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
Y N +G+A+S+A L V
Sbjct: 380 YQCVAENEAGNAQSSAQLIVP 400
Score = 40.6 bits (95), Expect = 1e-05
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 15 EPVGDPSMRVDWFINGRPL---PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71
E +GDP + W N + L P SR G +L + + DSG Y N +
Sbjct: 144 EVIGDPMPTIHWQKNQQDLNPIPGDSRVVV-LPSG--ALQISRLQPGDSGVYRCSARNPA 200
Query: 72 GSAES-TALLSVQGR 85
+ A + +
Sbjct: 201 STRTGNEAEVRILSD 215
Score = 38.3 bits (89), Expect = 9e-05
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFG----FISLDLLSIVLHDSGEYTVRVTNNS-GSA 74
+ W +G L ++ D G Y + GS
Sbjct: 50 GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSI 109
Query: 75 ES-TALLSVQG 84
S TA + V G
Sbjct: 110 ISRTAKVMVAG 120
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 53.0 bits (127), Expect = 9e-11
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLH-------DSGEYTVRVTNN 70
G P+ + W NG L +S T F + + L ++G YT+ N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 71 SGSAESTALLSVQGR 85
G A ++ + +
Sbjct: 86 FGQASASIMAAFMDN 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 52.4 bits (126), Expect = 1e-10
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFG-FISLDLLSIVLHDSGE 62
+ F RI V WF++ PL A+ + G + L L + L DSG
Sbjct: 27 EGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
G ++A L V
Sbjct: 85 IYFEA----GDQRASAALRVT 101
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 52.1 bits (125), Expect = 2e-10
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G P + W +G + + G L + L D+G YT + SG A
Sbjct: 33 TGSPVPTILWRKDGVLVSTQDSRIKQLENG--VLQIRYAKLGDTGRYTCIASTPSGEATW 90
Query: 77 TALLSVQGR 85
+A + VQ
Sbjct: 91 SAYIEVQEF 99
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 52.0 bits (125), Expect = 2e-10
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ F+ V D + W+ NG + S R T + F L + + D G+
Sbjct: 21 KAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGD 77
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
YT + S +A L+
Sbjct: 78 YTFVPDGYALSL--SAKLNFL 96
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 51.9 bits (125), Expect = 2e-10
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ + V P V W L + + + + L + ++ DSG
Sbjct: 21 LEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGR 77
Query: 63 YTVRVTNNSGSAESTALLSVQGRREG 88
Y+ G ++A L+V G
Sbjct: 78 YSCSF----GDQTTSATLTVTALPSG 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 51.6 bits (124), Expect = 2e-10
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+ DP + V W+ NG+ + S++ K L + + + D EY V G +
Sbjct: 32 LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA----GDEKC 87
Query: 77 TALLSVQ 83
+ L V+
Sbjct: 88 STELFVR 94
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 53.4 bits (128), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P + W P+P+++ +T+ L + +I L D G Y N G +
Sbjct: 139 GNPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQ 194
Query: 78 ALLSVQG 84
A + VQ
Sbjct: 195 ARIYVQA 201
Score = 35.2 bits (81), Expect = 0.001
Identities = 9/63 (14%), Positives = 22/63 (34%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+ W +N P+ + +L + ++ D G Y+ V++ S + +
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 80 LSV 82
Sbjct: 98 FIP 100
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 53.3 bits (128), Expect = 3e-10
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+ +G+P+ + W N + S+ + G L + + D G+Y N+ G+
Sbjct: 133 KAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTE 189
Query: 75 ESTA-LLSVQGRREG 88
S A L V+ RR G
Sbjct: 190 HSKATNLYVKVRRVG 204
Score = 42.1 bits (99), Expect = 3e-06
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSI----VLHDSGEYTVRVTNNSGS 73
GDP + W NG+ + + T + + +L I D Y N G
Sbjct: 32 GDPPPSIVWRKNGKKVSGTQSRYTVLEQPG-GISILRIEPVRAGRDDAPYECVAENGVGD 90
Query: 74 AES-TALLSVQGRRE 87
A S A L++ +
Sbjct: 91 AVSADATLTIYEGDK 105
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 53.6 bits (128), Expect = 3e-10
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFK-------FGFISLDLLSIVLHDSGEYTVRVTNN 70
G P+ + W NG L +S T F L L ++G YT+ N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 71 SGSAESTALLSVQ 83
G A ++ + +
Sbjct: 332 FGQASASIMAAFM 344
Score = 42.0 bits (98), Expect = 4e-06
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAES 76
G + W + A+ + L L ++ + T N+ G AE
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSL--GLTLANVTSDLNRKNVTCWAENDVGRAEV 241
Query: 77 TALLSVQ 83
+ ++V
Sbjct: 242 SVQVNVS 248
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 53.0 bits (127), Expect = 4e-10
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
VG P WF N PL ++ + + L G Y V N+ S
Sbjct: 141 VAVGSPIPHYQWFKNELPLTHETKKL---------YMVPYVDLEHQGTYWCHVYNDRDSQ 191
Query: 75 ESTALLSVQ 83
+S + +
Sbjct: 192 DSKKVEIII 200
Score = 50.7 bits (121), Expect = 3e-09
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES- 76
G P ++ WF + +P + + L ++ + D+G Y RV NN S
Sbjct: 44 GHPFVQYQWFKMNKEIPNGNTSE---------LIFNAVHVKDAGFYVCRVNNNFTFEFSQ 94
Query: 77 TALLSVQGRRE 87
+ L V E
Sbjct: 95 WSQLDVCDIPE 105
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 50.8 bits (122), Expect = 4e-10
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 5 KRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKF----GFISLDLLSIVLHDS 60
++ V + +V W NG L ++F L +V D
Sbjct: 23 GDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDR 79
Query: 61 GEYTVRVTNNSGSAESTALLSVQGRR 86
G Y V AE L V+ ++
Sbjct: 80 GRYQVITNGGQCEAE----LIVEEKQ 101
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 52.4 bits (126), Expect = 4e-10
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+G+P V W L +SR G SL + ++ D+G+Y N+ G+A
Sbjct: 123 TTMGNPKPSVSWIKGDSALRENSRIAVLES-G--SLRIHNVQKEDAGQYRCVAKNSLGTA 179
Query: 75 EST-ALLSVQ 83
S L V+
Sbjct: 180 YSKLVKLEVE 189
Score = 42.4 bits (100), Expect = 2e-06
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
P + W N + + + G L +LS+ D G Y N G A
Sbjct: 30 AVESYPQPEISWTRNKILIKLFDTRYSIRENGQ-LLTILSVEDSDDGIYCCTANNGVGGA 88
Query: 75 -ESTALLSVQGR 85
ES L V+ +
Sbjct: 89 VESCGALQVKMK 100
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 50.8 bits (122), Expect = 4e-10
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ + + V V+W L R + L + + + D+GE
Sbjct: 21 SEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 63 YTVRVTNNSGSAESTALLSVQGR 85
Y+ G ++A L+V+
Sbjct: 77 YSCMC----GQERTSATLTVRAL 95
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 50.4 bits (121), Expect = 4e-10
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
FEA ++V W G + AS++ + +L + + D G
Sbjct: 21 AAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGS 77
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
Y V GS++ L V
Sbjct: 78 YAVIA----GSSKVKFDLKVI 94
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 53.2 bits (127), Expect = 6e-10
Identities = 15/70 (21%), Positives = 22/70 (31%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P + + W N T +L LL + DSG Y N S + +
Sbjct: 51 VSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS 110
Query: 78 ALLSVQGRRE 87
L V +
Sbjct: 111 IELRVFENTD 120
Score = 47.8 bits (113), Expect = 4e-08
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+++ W+ + L + G L + + L D+G Y +T
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQ 206
Query: 75 ESTALLSVQ 83
+ S++
Sbjct: 207 QYNITRSIE 215
Score = 32.7 bits (74), Expect = 0.009
Identities = 9/78 (11%), Positives = 17/78 (21%), Gaps = 14/78 (17%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFG-------------FISLDLLSIVLHDSG-E 62
G P + W+ S+ G + L + D +
Sbjct: 254 TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMD 313
Query: 63 YTVRVTNNSGSAESTALL 80
+ V N +
Sbjct: 314 FKCVVHNTLSFQTLRTTV 331
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 49.7 bits (119), Expect = 1e-09
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI-SLDLLSIVLHDSG 61
+ KI + D V W NG+ + S G +L + L D
Sbjct: 29 SKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDA 85
Query: 62 EYTVRVTNNSGSAESTALLSVQ 83
Y V S E L V+
Sbjct: 86 AYQCVVGGEKCSTE----LFVK 103
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 50.9 bits (122), Expect = 1e-09
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+G+P + G + ++ R + L + + + D+G Y + T+ G
Sbjct: 25 TAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 84
Query: 75 ES-TALLSVQ 83
+ T +L +
Sbjct: 85 QEATVVLEIY 94
Score = 46.3 bits (110), Expect = 7e-08
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI---SLDLLSIVLHDSGEYTVRVTNNS 71
P+ V W + + S +F + +L +L+I D G Y +
Sbjct: 119 RVSSSPAPAVSWLYHNEEVTTISD----NRFAMLANNNLQILNINKSDEGIYRCEGRVEA 174
Query: 72 GSAESTALLSV 82
+ V
Sbjct: 175 RGEIDFRDIIV 185
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 51.8 bits (124), Expect = 1e-09
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P+ + W+ G LP+ F+ +L + ++ DSGEY +N GS T
Sbjct: 248 GVPTPDIAWYKKGGDLPSDK---AKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 78 ALLSVQ 83
+ V+
Sbjct: 305 ISVRVK 310
Score = 49.1 bits (117), Expect = 1e-08
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +NG PL ++ + ++ + Y +N G +
Sbjct: 338 GNPKPTVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLAN 396
Query: 78 ALLSVQ 83
A +SV
Sbjct: 397 AFVSVL 402
Score = 42.2 bits (99), Expect = 4e-06
Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 5/72 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFG----FISLDLLSIVLHDSGEYTVRVTNNSGS 73
G+P+ W N R + + + I GEY N G+
Sbjct: 43 GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGT 102
Query: 74 AES-TALLSVQG 84
A S L V
Sbjct: 103 ALSNRIRLQVSK 114
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDS-GEYTVRVTNNSGSA 74
P G PS + W + + + G L +++L D +Y+ +
Sbjct: 141 PPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHT 198
Query: 75 EST 77
Sbjct: 199 IQQ 201
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 49.3 bits (118), Expect = 1e-09
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E PS ++ W +G PLP L L I D G Y+ T++S
Sbjct: 33 EVPAQPSPQIHWMKDGVPLPLPPSPV---------LILPEIGPQDQGTYSCVATHSSHGP 83
Query: 75 ESTALLSVQ 83
+ + +S+
Sbjct: 84 QESRAVSIS 92
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 48.9 bits (117), Expect = 2e-09
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
++I + I + W NG P+ S R K L + + + D G+
Sbjct: 20 NLGKEICLKCEIS--ENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
Query: 63 YTVRVTNNSGSAESTALLSVQ 83
Y + A + V
Sbjct: 76 YVFAPDA--YNVTLPAKVHVI 94
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 51.4 bits (123), Expect = 2e-09
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G P + W +G P+ F L + ++ +D EY N +G +
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 76 STALLSVQGR 85
++ L V +
Sbjct: 282 ASIHLKVFAK 291
Score = 41.8 bits (98), Expect = 5e-06
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 1/66 (1%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ W GR + L + I D G Y + +
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARGEINF 184
Query: 78 ALLSVQ 83
+ V
Sbjct: 185 KDIQVI 190
Score = 33.7 bits (77), Expect = 0.003
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 15 EPVGDP-SMRVDWF-INGRPLPASSRATTTFKFGFIS--LDLLSIVLHDSGEYTVRVTNN 70
+ GD + WF NG L + + + S L + + + D+G Y VT
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84
Query: 71 SGSAES-TALLSVQ 83
G+ T + +
Sbjct: 85 DGTQSEATVNVKIF 98
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 51.5 bits (123), Expect = 2e-09
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P V W +G+ + S L + S+ D G Y V N+ SAE++
Sbjct: 333 GNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEAS 382
Query: 78 ALLSV 82
A L +
Sbjct: 383 AELKL 387
Score = 47.6 bits (113), Expect = 5e-08
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G P+ W+ + + +L + V+ DSG+Y V N+ G
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297
Query: 76 STALLSVQ 83
+L+V
Sbjct: 298 VETVLTVT 305
Score = 31.4 bits (71), Expect = 0.025
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 10/73 (13%)
Query: 18 GDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHD------SGEYTVRVTNN 70
G+P + W +G + G L D + Y N
Sbjct: 30 GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQ 87
Query: 71 SGSAES-TALLSV 82
GS S +
Sbjct: 88 FGSIISRDVHVRA 100
Score = 28.4 bits (63), Expect = 0.26
Identities = 11/80 (13%), Positives = 16/80 (20%), Gaps = 6/80 (7%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDL--LSIVLHDS-GEYTVRVTNNSGS 73
V D V W + S +L + D Y R +
Sbjct: 131 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 190
Query: 74 AE---STALLSVQGRREGEV 90
+T V
Sbjct: 191 ETRLSATKGRLVITEPISSS 210
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 49.9 bits (119), Expect = 4e-09
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI-----SLDLLSIVLHDSGEYTVRVTN 69
P G P + W +G PL + +L + ++ D G Y N
Sbjct: 132 PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQN 191
Query: 70 NSGSAES-TALLSVQGRRE 87
G+ ES A L VQ +
Sbjct: 192 LVGTRESSYAKLIVQVKAA 210
Score = 43.7 bits (103), Expect = 1e-06
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF----GFISLDLLSIVLHDSGEYTVRVTNNSGS 73
G P ++WF +G P+ + + + +F F + D GEY N G
Sbjct: 35 GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Query: 74 AES-TALLSVQ 83
A S A L +
Sbjct: 95 AVSRHASLQIA 105
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 48.5 bits (116), Expect = 4e-09
Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
+ + V+W+ L R + L + +V D+GEY
Sbjct: 33 EGATAVLRCELS--KMAP--VEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEY 88
Query: 64 TVRVTNNSGSAESTALLSVQGR 85
G ++A+L+V+
Sbjct: 89 LCMC----GKERTSAMLTVRAM 106
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 50.0 bits (119), Expect = 5e-09
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI--------SLDLLSIVLHDSGEYTVR 66
E G P WF +G + + T L + DSGEY +
Sbjct: 128 EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQ 187
Query: 67 VTNNSGSAESTALLSVQ 83
N G+A + +
Sbjct: 188 AQNGYGTAMRSEAAHMD 204
Score = 33.8 bits (77), Expect = 0.003
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 18 GDPSMRVDW-FINGRPLPA-------SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTN 69
G S RV+W F+ G ++ F + S+ D+GEYT V+
Sbjct: 27 GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE 86
Query: 70 NSGSAESTALLSVQ 83
G + +
Sbjct: 87 EGGQNYGEVSIHLT 100
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 50.3 bits (120), Expect = 5e-09
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 18 GDPSMRVDWFINGRPLPASS--RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+P ++F NG+ + + R T + L + + D G YT V N G +
Sbjct: 238 SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Query: 76 S-TALLSVQ 83
+ L+V
Sbjct: 298 KHSLKLTVV 306
Score = 48.8 bits (116), Expect = 2e-08
Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P+ V W N +PL T L + + D G Y R TN G
Sbjct: 335 GLPAPNVVWSHNAKPLSGGRA---TVTDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFE 389
Query: 78 ALLSV 82
L+ V
Sbjct: 390 TLVQV 394
Score = 41.0 bits (96), Expect = 8e-06
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 3/72 (4%)
Query: 18 GDPS-MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
G+ ++ W +G+ + SL L D G Y +G A S
Sbjct: 32 GNDQGVKYSWKKDGKSYNWQEH-NAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASS 90
Query: 77 -TALLSVQGRRE 87
Sbjct: 91 RVISFRKTYLIA 102
Score = 36.8 bits (85), Expect = 3e-04
Identities = 10/83 (12%), Positives = 19/83 (22%), Gaps = 8/83 (9%)
Query: 16 PVGDPSMRVDWFINGRPLPAS-------SRATTTFKFGFISLDLLSIVLHDSGEYTVRVT 68
P P + W + R T + + D +Y
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 69 NNSGSAEST-ALLSVQGRREGEV 90
N + E ++G +
Sbjct: 185 NAAVDEEVVLVEYEIKGVTKDNS 207
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 49.7 bits (118), Expect = 9e-09
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI-----SLDLLSIVLHDSGEYTVRVTNNSG 72
S+ W + + F +L + S ++DSG + N G
Sbjct: 238 VSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFG 297
Query: 73 SAESTALLSVQGR 85
SA T L V +
Sbjct: 298 SANVTTTLEVVDK 310
Score = 45.8 bits (108), Expect = 2e-07
Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 6/72 (8%)
Query: 18 GDPS-MRVDWFINGRPLPASSRATTTFKFGFI-----SLDLLSIVLHDSGEYTVRVTNNS 71
P W R + L L + + G YT V+N+
Sbjct: 339 AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD 398
Query: 72 GSAESTALLSVQ 83
+A + V
Sbjct: 399 VNAAIAFNVYVN 410
Score = 39.3 bits (91), Expect = 4e-05
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 18 GDPSMRVDWFING----------RPLPASSRATTTFKFG--FISLDLLSIVLHDSGEYTV 65
G P +DW+ P+ + ++ FG + + S +G
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491
Query: 66 RVTNNSGSAESTALLSVQGR 85
+ N+ G + + +G
Sbjct: 492 KAYNDVGKTSAYFNFAFKGN 511
Score = 35.4 bits (81), Expect = 9e-04
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 16 PVGDPSMRVDWF--INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
P+ DP + G+PLP R K G + + + V S
Sbjct: 137 PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRA--YHRLCLHCSVDQEGKS 194
Query: 74 AESTAL 79
S
Sbjct: 195 VLSEKF 200
Score = 27.3 bits (60), Expect = 0.58
Identities = 5/51 (9%), Positives = 13/51 (25%), Gaps = 8/51 (15%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
V W ++ ++G+YT + ++
Sbjct: 64 VKWTFEILDETNENKQNE--------WITEKAEATNTGKYTCTNKHGLSNS 106
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 47.0 bits (112), Expect = 1e-08
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+ W+ +G+ + S L L + DSGE+ R S
Sbjct: 34 LSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSAFFG- 92
Query: 77 TALLSVQ 83
++VQ
Sbjct: 93 ---VTVQ 96
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 46.9 bits (112), Expect = 1e-08
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
+ + G P V W + + + S + + L + L D+GE
Sbjct: 21 APGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 63 YTVRVTNNSGSAESTALLSVQGR 85
YT V + +A L V+ +
Sbjct: 78 YTCEVEASKSTAS----LHVEEK 96
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 47.9 bits (114), Expect = 2e-08
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 6 RKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65
+ + + M W NG L A+ + + + DSGEY
Sbjct: 19 LPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-----EYRINKPRAEDSGEYHC 73
Query: 66 RVTNNSGSAESTALLSVQG 84
V + + ++ A + V+
Sbjct: 74 -VYHFVSAPKANATIEVKA 91
Score = 47.2 bits (112), Expect = 4e-08
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 18 GDPSMRVDWFINGRPLP-----ASSRATTTFKFGFISLDLLSIVL-HDSGEYTVRVTNNS 71
G P W + +S R K + L+++++ + D GEY TN+
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSI 177
Query: 72 GSAESTALLSVQ 83
GSA + +L V+
Sbjct: 178 GSASVSTVLRVR 189
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 47.6 bits (113), Expect = 3e-08
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFI---------SLDLLSIVLHDSGEYTVR 66
V V W +G+ L + T G L + S+ L D+G+Y
Sbjct: 27 QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCL 86
Query: 67 VTNNSGSAES-TALLSVQG 84
V + S + ++G
Sbjct: 87 VFLGHQTFVSQPGYVGLEG 105
Score = 43.4 bits (102), Expect = 1e-06
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 15 EPVGDPS-MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSG 72
+ G P + + W + PL + L + L+ + ++ N G
Sbjct: 129 QAQGPPEPVDLLWLQDAVPLATAPGHGPQRS--------LHVPGLNKTSSFSCEAHNAKG 180
Query: 73 SAES-TALLSVQGRR 86
S TA ++V ++
Sbjct: 181 VTTSRTATITVLPQQ 195
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 46.2 bits (110), Expect = 3e-08
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 17 VGDPSMRVDWFINGRPLP--ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
V + V WF NG + SR + L + D+ EY+V T SA
Sbjct: 31 VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSA 90
Query: 75 ESTALLSVQGR 85
+ LSV +
Sbjct: 91 K----LSVDLK 97
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 47.5 bits (113), Expect = 3e-08
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P G P + W +G PL T G L + D+G+Y TN G E
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERE 192
Query: 76 S-TALLSVQGR 85
S A L+V R
Sbjct: 193 SEVAELTVLER 203
Score = 40.9 bits (96), Expect = 9e-06
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVL-------HDSGEYTVRVTNN 70
G P+ ++W+ G + + + S L + + D G Y N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 71 SGSAES-TALLSVQGRR 86
G A S A L V R
Sbjct: 95 LGEAVSHDASLEVAILR 111
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 47.9 bits (113), Expect = 3e-08
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ W+ N + L + +L + + L DSG Y V + ++
Sbjct: 155 AKHYNNITWYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211
Query: 78 ALLSVQ 83
++S
Sbjct: 212 IVVSRC 217
Score = 37.9 bits (87), Expect = 1e-04
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 11 EARIEPVGDPSMRVDWFINGRPLPAS-----SRATTTFKFGFISLDLLSIVLHDSGE-YT 64
A + + +DW + S T++ +L ++ G YT
Sbjct: 251 TAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYT 310
Query: 65 VRVTNNSGSAESTALLSVQ 83
R N T + ++
Sbjct: 311 CRGHNYYFDKTLTTTVVLE 329
Score = 31.0 bits (69), Expect = 0.036
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE-YTVRVTNNSGSA 74
D V+W G+ +R K G L + + +DS Y VT +G
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNR---RVKNG--DLWIANYTSNDSHRRYLCTVTTKNGDC 116
Query: 75 ESTALLSV 82
+ S
Sbjct: 117 VQGIVRSH 124
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 47.1 bits (112), Expect = 3e-08
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 15 EPVGDPS-MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
E VG P + + W+ + + + + + S ++ N G
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSPSVLN---------VTGVTQSTMFSCEAHNLKGL 171
Query: 74 AES-TALLSVQ 83
A S TA + +Q
Sbjct: 172 ASSRTATVHLQ 182
Score = 44.4 bits (105), Expect = 4e-07
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
G + W +G + + L L S+ D+G Y +V + +
Sbjct: 28 GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI 87
Query: 76 S-TALLSVQG 84
S L+V+G
Sbjct: 88 SQPVWLTVEG 97
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 47.4 bits (112), Expect = 3e-08
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G ++ +W + + + + SG Y+ V N GS +
Sbjct: 148 GSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCM 205
Query: 78 ALLSVQG 84
L V
Sbjct: 206 LRLDVVP 212
Score = 39.7 bits (92), Expect = 2e-05
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 24/98 (24%)
Query: 12 ARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI----------------------- 48
+ P + ++W I+ + + I
Sbjct: 24 FTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGD 83
Query: 49 -SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGR 85
S+++ ++ L D G Y +V G A LL+V +
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 47.0 bits (111), Expect = 5e-08
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
D + W N + L + R T L + I D+GEY ++N
Sbjct: 132 CLSNDIGANIQWLFNSQSLQLTERM--TLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189
Query: 75 ES-TALLSVQ 83
S + L +
Sbjct: 190 RSNSIKLDII 199
Score = 29.6 bits (66), Expect = 0.093
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 32 PLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
A S + G SL I + D G YT+ +T+ + +
Sbjct: 57 TGQAYSGREIIYSNG--SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFH 105
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 46.7 bits (111), Expect = 5e-08
Identities = 11/72 (15%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI---SLDLLSIVLHDSGEYTVRVTNNS 71
+ V + W GR + +F + L + I D G Y +
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKD----VRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA 178
Query: 72 GSAESTALLSVQ 83
+ + V
Sbjct: 179 RGEINFKDIQVI 190
Score = 37.1 bits (86), Expect = 2e-04
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 15 EPVGDP-SMRVDWF-INGRPLPASSRATTTFKFGFISLDLL--SIVLHDSGEYTVRVTNN 70
+ GD + WF NG L + + + S L + + D+G Y VT
Sbjct: 25 QVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE 84
Query: 71 SGSAES-TALLSVQ 83
G+ T + +
Sbjct: 85 DGTQSEATVNVKIF 98
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 47.2 bits (111), Expect = 5e-08
Identities = 8/68 (11%), Positives = 14/68 (20%)
Query: 12 ARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS 71
+ P + W N + + L SG Y +
Sbjct: 131 VILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 72 GSAESTAL 79
+ L
Sbjct: 191 PEDANFYL 198
Score = 43.3 bits (101), Expect = 1e-06
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ + WF +G+ + + + G + D G Y + + N
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-------PRGMYQCKGSQNKSKPLQV 78
Query: 78 ALLSVQG 84
Sbjct: 79 YYRMGSA 85
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold,
transmembrane, glycoprotein, signal, complex
(immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 47.0 bits (111), Expect = 6e-08
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ + W+ + P S+ + L + + DSG Y V N+S
Sbjct: 32 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91
Query: 78 ALLSVQGR 85
Sbjct: 92 ISAKFVEN 99
Score = 46.3 bits (109), Expect = 1e-07
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+ + ++ W+ + +PL + F L ++++ G YT +
Sbjct: 132 KNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGK 188
Query: 75 ESTALLSVQ 83
+ ++
Sbjct: 189 QYPITRVIE 197
Score = 37.8 bits (87), Expect = 1e-04
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 13/78 (16%)
Query: 18 GDPSMRVDWFINGRPLPASSRA---------TTTFKFGFISLDLLSI----VLHDSGEYT 64
G S W NG + K + +L+I +T
Sbjct: 235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294
Query: 65 VRVTNNSGSAESTALLSV 82
N G + L
Sbjct: 295 CFAKNTHGIDAAYIQLIY 312
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 45.4 bits (107), Expect = 7e-08
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 14/88 (15%)
Query: 8 IHFEARIEPVGDPSMR---VDWF---------INGRPLPASSRATTTFKFGFISLDLLSI 55
I F AR+ G ++ V WF G+ L K L +
Sbjct: 22 ITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79
Query: 56 VLHDSGEYTVRVTNNSGSAESTALLSVQ 83
+G Y V+ S L+V
Sbjct: 80 QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 45.8 bits (108), Expect = 8e-08
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 17 VGDPSMRVDWFINGRPLPASSRA-------------TTTFKFGFISLDLLSIVLHDSGEY 63
VG P + W+ G+ T + ++ + ++V D+G Y
Sbjct: 46 VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTY 105
Query: 64 TVRVTNNSGSAESTALLSVQGRR 86
R +N+ T V+ R
Sbjct: 106 ECRASNDPDRNHLTRAPRVKWVR 128
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 45.0 bits (106), Expect = 1e-07
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 14/94 (14%)
Query: 8 IHFEARIEPVGDPSM---RVDWF---------INGRPLPASSRATTTFKFGFISLDLLSI 55
I F A+++ + + + WF G+ L + + ++
Sbjct: 25 ITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKA 82
Query: 56 VLHDSGEYTVRVTNNSGSAESTALLSVQGRREGE 89
+ +G Y VT + L V
Sbjct: 83 KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 43.6 bits (103), Expect = 2e-07
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 18 GDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
P+ + W ++ LP+ + L + ++ D+G Y +N +
Sbjct: 37 KSPAYTLVWTRLHNGKLPSRAMDFNG------ILTIRNVQPSDAGTYVCTGSNMFAMDQG 90
Query: 77 TALLSVQ 83
TA L VQ
Sbjct: 91 TATLHVQ 97
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 44.6 bits (105), Expect = 3e-07
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 10/67 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
S V + +L + + L DSG +T V N E
Sbjct: 123 PGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 78 ALLSVQG 84
+ V
Sbjct: 173 IDIVVLA 179
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 45.1 bits (106), Expect = 3e-07
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+W PLP + A L + + + VTN G+ ++
Sbjct: 246 EPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKPINTTLICNVTNALGARQAELT 299
Query: 80 LSV 82
+ V
Sbjct: 300 VQV 302
Score = 38.9 bits (90), Expect = 5e-05
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVL---HDSGEYTVRVTNNSG-- 72
G P ++ W + +P +S+ L +V D T +V + S
Sbjct: 144 GRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEK 203
Query: 73 SAESTALLSVQ 83
T L+V
Sbjct: 204 PQLLTVNLTVY 214
Score = 29.3 bits (65), Expect = 0.12
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN-SGSA 74
V + + + R ++R + SL + + + D G YT GS
Sbjct: 49 AVFHQTQGPSYSESKRLEFVAARLGAELRNA--SLRMFGLRVEDEGNYTCLFVTFPQGSR 106
Query: 75 ESTALLSVQ 83
L V
Sbjct: 107 SVDIWLRVL 115
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 45.1 bits (106), Expect = 4e-07
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVRVTNNSGSAESTA 78
P+ W LP A +L + +G Y TN G+
Sbjct: 261 PATEYHWTTLNGSLPKGVEAQNR------TLFFKGPINYSLAGTYICEATNPIGTRSGQV 314
Query: 79 LLSVQ 83
+++
Sbjct: 315 EVNIT 319
Score = 39.3 bits (91), Expect = 3e-05
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 4/69 (5%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV---LHDSGEYTVRVTNNSGSA 74
G P V W + + +V V +
Sbjct: 162 GKPPSVVSWETRLKGEAEYQ-EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF 220
Query: 75 ESTALLSVQ 83
+ + L+VQ
Sbjct: 221 KESLTLNVQ 229
Score = 28.2 bits (62), Expect = 0.33
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 49 SLDLLSIVLHDSGEYTVRV-TNNSGSAESTALLSV 82
++ L + L D G Y T +G+ ES L+V
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTV 127
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 44.5 bits (105), Expect = 5e-07
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
V ++ NG+ + L +L + +G Y +
Sbjct: 109 DKLVYNVLYYRNGKAFKFFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAG 160
Query: 78 ALLSVQGR 85
++V+
Sbjct: 161 ISVTVKEL 168
Score = 36.8 bits (85), Expect = 2e-04
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
S WF+NG S+ S + S ++DSGEY + + S
Sbjct: 30 GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQRGLSGRSDP 75
Score = 33.7 bits (77), Expect = 0.004
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 11/69 (15%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
+ +++ + L + ++ +L+ DSG Y G+ +
Sbjct: 202 GLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCEAATEDGNVLKRS 253
Query: 79 L---LSVQG 84
L V G
Sbjct: 254 PELELQVLG 262
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 43.7 bits (103), Expect = 7e-07
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P ++V +F NG+ S T + SG+Y S
Sbjct: 112 DKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQANHSHSGDYHCTGNIGYTLFSSK 163
Query: 78 AL-LSVQ 83
+ ++VQ
Sbjct: 164 PVTITVQ 170
Score = 39.0 bits (91), Expect = 3e-05
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 12/64 (18%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
S + WF NG +P ++ +DSGEYT + S S
Sbjct: 33 ESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTGQTSLSDPVH-- 80
Query: 80 LSVQ 83
L+V
Sbjct: 81 LTVL 84
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 42.9 bits (101), Expect = 1e-06
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 9/67 (13%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+V + NG+ + + L DSG Y R S + S
Sbjct: 115 NTALHKVTYLQNGKDRKYFHHNSD--------FHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 78 AL-LSVQ 83
+ +++
Sbjct: 167 TVNITIT 173
Score = 36.0 bits (83), Expect = 4e-04
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
WF N + + + S + + ++DSGEY + ++ S
Sbjct: 36 EDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQTNLSTLS 79
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 43.3 bits (101), Expect = 1e-06
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLD-----LLSIVLHDSGEYTVRVTN 69
+ + W+ + IS + +L+D+G YT + N
Sbjct: 41 STAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRN 100
Query: 70 NSGSAESTALLSVQ 83
+ ++ L V
Sbjct: 101 TTYCSKVAFPLEVV 114
Score = 40.2 bits (93), Expect = 2e-05
Identities = 9/84 (10%), Positives = 19/84 (22%), Gaps = 11/84 (13%)
Query: 11 EARIEPVGDPSMRVDWFINGRPL---PASSRATTTFKFGFISLDLLSIVL--------HD 59
+ D V W I+G+ + + + +L
Sbjct: 249 TVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDL 308
Query: 60 SGEYTVRVTNNSGSAESTALLSVQ 83
Y + G A + +
Sbjct: 309 KRSYVCHARSAKGEVAKAAKVKQK 332
Score = 37.2 bits (85), Expect = 2e-04
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNS----GS 73
+ W++ + + +L L ++ ++G YT VT
Sbjct: 151 SSVKPTITWYMGCYKIQNFNNVIPEGM----NLSFLIALISNNGNYTCVVTYPENGRTFH 206
Query: 74 AESTALLSVQGR 85
T + V G
Sbjct: 207 LTRTLTVKVVGS 218
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 42.5 bits (99), Expect = 2e-06
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P + + W + + + + +G YTV+V S +
Sbjct: 124 PADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVYTVKVWGESEDSA 172
Query: 76 STALLSVQ 83
++A +
Sbjct: 173 ASASTKIM 180
Score = 39.0 bits (90), Expect = 4e-05
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 10/57 (17%)
Query: 26 WFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
W + +P T T L + ++G Y V V + + + +
Sbjct: 40 WTKDDQPHEN---NTAT-------LTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86
Score = 24.8 bits (53), Expect = 5.6
Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 16 PVGDPSMRVDWFING----RPLPASSRATTTFKFGFIS----LDLLSIVLHDSGEYTVRV 67
+ + +++ +W++ P S + I+ L S D+ ++
Sbjct: 218 GMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVA 277
Query: 68 TNNSGSAESTALLSV 82
+ T ++
Sbjct: 278 KLYQQIEDETVEVAA 292
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 42.2 bits (99), Expect = 3e-06
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 18 GDPSMRVDWFINGR---PLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G +P +S + +L L ++ D+G Y+ +N+ G+
Sbjct: 212 NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR 271
Query: 75 ESTALLSVQ 83
+T V
Sbjct: 272 TATMNFQVV 280
Score = 35.7 bits (82), Expect = 7e-04
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 5/62 (8%)
Query: 23 RVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
V+W P + +L + ++G Y + + +T L V
Sbjct: 31 SVEWDGPISPYWTLDPESPGS-----TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Query: 83 QG 84
+
Sbjct: 86 KD 87
Score = 33.0 bits (75), Expect = 0.006
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 3/67 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
V G + + + DS Y + N + ST
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTST 173
Query: 78 AL-LSVQ 83
+ L V
Sbjct: 174 GIWLKVN 180
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 41.8 bits (98), Expect = 3e-06
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 11/71 (15%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E + ++ + +G+ L S R S ++ N
Sbjct: 123 EVMNGTDPELNLYQDGKHLKLSQRVI-----------THKWTTSLSAKFKCTAGNKVSKE 171
Query: 75 ESTALLSVQGR 85
S +S +
Sbjct: 172 SSVEPVSCPEK 182
Score = 33.3 bits (76), Expect = 0.004
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
++ F + FK G +L + + D Y V + + G
Sbjct: 38 TSDKKKIAQFRKEKETFKEKDTYKLFKNG--TLKIKHLKTDDQDIYKVSIYDTKGKNVLE 95
Query: 78 ALLSVQ 83
+ ++
Sbjct: 96 KIFDLK 101
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 42.0 bits (98), Expect = 3e-06
Identities = 13/75 (17%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLH-------DSGEYTVRVTNN 70
S+ W ++ L DSG + N
Sbjct: 215 VSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNT 274
Query: 71 SGSAESTALLSVQGR 85
GSA T L V +
Sbjct: 275 FGSANVTTTLKVVEK 289
Score = 30.5 bits (68), Expect = 0.042
Identities = 8/73 (10%), Positives = 16/73 (21%), Gaps = 4/73 (5%)
Query: 18 GDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+ +G+ LP K G + + + S
Sbjct: 117 DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKN--VKRAYHRLCVRCAAQRDGTWLHS 174
Query: 77 TAL-LSVQGRREG 88
L V+ +
Sbjct: 175 DKFTLKVREAIKA 187
Score = 25.1 bits (54), Expect = 4.3
Identities = 7/52 (13%), Positives = 10/52 (19%), Gaps = 7/52 (13%)
Query: 23 RVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
V W +G YT +N S+
Sbjct: 39 FVRWTFKTYFNEMVENKKNE-------WIQEKAEATRTGTYTCSNSNGLTSS 83
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 41.8 bits (98), Expect = 3e-06
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES- 76
+V ++ +G L + + + + DSG Y ES
Sbjct: 112 NWDVYKVIYYKDGEALKYWYENHN--------ISITNATVEDSGTYYCTGKVWQLDYESE 163
Query: 77 TALLSVQ 83
++V
Sbjct: 164 PLNITVI 170
Score = 36.8 bits (85), Expect = 2e-04
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
WF NG ++ SL++++ DSGEY + + S
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEP 78
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 42.1 bits (98), Expect = 4e-06
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
S V + +L + + L DSG +T V N E
Sbjct: 122 PGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 78 ALLSVQGR 85
+ V
Sbjct: 172 IDIVVLAF 179
Score = 35.2 bits (80), Expect = 0.001
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDL-LSIVLH--- 58
++ ++A + D + ++ + L L L L
Sbjct: 208 TGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYA 267
Query: 59 DSGEYTVRVTNNSGSAESTALLSVQ 83
SG T+ + +G L V
Sbjct: 268 GSGNLTLALEAKTGKLHQEVNLVVM 292
Score = 30.1 bits (67), Expect = 0.061
Identities = 7/64 (10%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
P + + + + S R + ++ ++G + + ++SG +
Sbjct: 310 SPKLMLSLKLENKEAKVSKREK-----------AVWVLNPEAGMWQCLL-SDSGQVLLES 357
Query: 79 LLSV 82
+ V
Sbjct: 358 NIKV 361
Score = 27.5 bits (60), Expect = 0.63
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 17/82 (20%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKF-----------------GFISLDLLSIVL 57
S++ W + + ++ + K G L + ++ +
Sbjct: 17 TASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKI 76
Query: 58 HDSGEYTVRVTNNSGSAESTAL 79
DS Y V + +
Sbjct: 77 EDSDTYICEVEDQKEEVQLLVF 98
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 42.2 bits (98), Expect = 4e-06
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 13/67 (19%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P + +G + +++ G Y R + G
Sbjct: 396 GNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTRE 442
Query: 78 ALLSVQG 84
++V
Sbjct: 443 VTVNVLS 449
Score = 29.8 bits (66), Expect = 0.080
Identities = 5/71 (7%), Positives = 17/71 (23%), Gaps = 3/71 (4%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
++ V + L ++ +L H ++ R +
Sbjct: 117 ANLTVVLLRGEKELKREPAVGEP---AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 80 LSVQGRREGEV 90
+ + +
Sbjct: 174 ENTSAPYQLQT 184
Score = 25.6 bits (55), Expect = 2.4
Identities = 4/66 (6%), Positives = 14/66 (21%), Gaps = 12/66 (18%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ ++ P + L L + + ++ T
Sbjct: 309 PRAKVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSCSATLEVAGQLIH 356
Query: 78 ALLSVQ 83
+ +
Sbjct: 357 KNQTRE 362
Score = 24.4 bits (52), Expect = 5.9
Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+ ++ + + L + LS V + + G + +
Sbjct: 29 MLLGIETPLPKKELLLPGNNRKVY--------ELSNV-QEDSQPMCYSNCPDGQSTAKTF 79
Query: 80 LSVQGRRE 87
L+V E
Sbjct: 80 LTVYWTPE 87
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 41.6 bits (98), Expect = 5e-06
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 18 GDPSMRVDWFI-NGRPLPASSRA-TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
GDP + W + A S T F G +L++ + D+G Y N G+
Sbjct: 411 GDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDS 468
Query: 76 STALLSVQ 83
A L V+
Sbjct: 469 MPAHLHVR 476
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 41.6 bits (97), Expect = 5e-06
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI-----SLDLLSIVLHDSGEYTVRVTNNSG 72
G+ + +W + T F L + S L DSG YT VT +
Sbjct: 207 GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266
Query: 73 SAESTALLSVQ 83
+ +++
Sbjct: 267 DHQDEKAINIT 277
Score = 35.1 bits (80), Expect = 0.001
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 21 SMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
S V W + P F + L L ++ D+GEY ++ G
Sbjct: 25 SAPVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDER 81
Score = 31.6 bits (71), Expect = 0.018
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 17 VGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
V DP + V + + GF + + Y + T +S
Sbjct: 119 VTDPQLVVTLHEKKGDVA--LPVPYDHQRGFSGI-------FEDRSYICKTTIGDREVDS 169
Query: 77 TALLSVQ 83
A +
Sbjct: 170 DAYYVYR 176
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 41.7 bits (98), Expect = 6e-06
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 16 PVGDPSMRVDWFI-NGRPLPASSRA--TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
V W NG + + G +L+ ++ + D+G YT V+N+ G
Sbjct: 364 RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSNSVG 421
Query: 73 SAESTALLSVQG 84
+ ++A L+V G
Sbjct: 422 NTTASATLNVTG 433
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 41.5 bits (97), Expect = 6e-06
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
D + V N L ++ +L+L + +G Y+ +N G
Sbjct: 213 VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHS 272
Query: 76 STALLSVQ 83
++ V
Sbjct: 273 TSMFFRVV 280
Score = 36.5 bits (84), Expect = 4e-04
Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 18 GDPSMRVDWF-INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
V + GRPL + + + GF + S +Y S
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT---IHRAKFIQSQDYQCSALMGGRKVMS 172
Query: 77 -TALLSVQGR 85
+ L VQ
Sbjct: 173 ISIRLKVQKV 182
Score = 33.0 bits (75), Expect = 0.007
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 23 RVDWFINGRPLPASSRATTTFKFGFIS-LDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81
V+W +G P P + + G S L + ++G Y + + L
Sbjct: 31 SVEW--DGPPSPHWTL----YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84
Query: 82 VQ 83
V+
Sbjct: 85 VK 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 41.0 bits (96), Expect = 9e-06
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 18 GDPSMRVDWFINGRPL-PASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+V + + S + + + G L + + D G YT + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNG--DLFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 77 TALLSVQG 84
+ L V
Sbjct: 330 SVELKVYN 337
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 39.7 bits (92), Expect = 9e-06
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTT--------FKFGFISLDLLSIVLHD 59
+ F D M W + L + L L ++
Sbjct: 28 VSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87
Query: 60 SGEYTVRVTNNSGSAEST-ALLSV 82
G Y ++N+ GS+ S A L++
Sbjct: 88 EGXYQCVISNHFGSSYSVXAXLTI 111
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 40.9 bits (95), Expect = 1e-05
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 18 GDPSMRVD--WFINGRPLP--------ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ ++ +D W +++ + K +L + + D G YT
Sbjct: 131 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 190
Query: 68 TNNSGSAESTALLSVQGR 85
++ + +++ + V
Sbjct: 191 SSGLMTKKNSTFVRVHED 208
Score = 34.8 bits (79), Expect = 0.002
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 17 VGDPSMRVDW---FINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
++ V + R +P +R + K GF + S ++ +G N S
Sbjct: 33 GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDES 89
Query: 74 AESTALLSV 82
+S + V
Sbjct: 90 YQSIMYIVV 98
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 40.8 bits (95), Expect = 1e-05
Identities = 8/67 (11%), Positives = 17/67 (25%), Gaps = 13/67 (19%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G+P + +G +++ G Y R + G
Sbjct: 211 GNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTRE 257
Query: 78 ALLSVQG 84
++V
Sbjct: 258 VTVNVLS 264
Score = 32.3 bits (73), Expect = 0.010
Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+V + + L + S+ ++ + T V + S E+
Sbjct: 34 SEAQVHLALGDQRLNPTVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQT 92
Query: 80 LSVQ 83
+++
Sbjct: 93 VTIY 96
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 40.6 bits (95), Expect = 1e-05
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 9/68 (13%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+V + NG+ + + L DSG Y R S + S
Sbjct: 115 NTALHKVTYLQNGKGRKYFHHNSD--------FYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Query: 78 AL-LSVQG 84
+ +++
Sbjct: 167 TVQITITQ 174
Score = 34.5 bits (79), Expect = 0.001
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
WF N + + + S + + + DSGEY + ++ S
Sbjct: 36 EDQSTQWFHNESLISSQAS----------SYFIDAATVDDSGEYRCQTQLSTLS 79
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 40.5 bits (94), Expect = 2e-05
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 17 VGDPSMRVDWFI---NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
+G ++ + R P T+ + S ++++ D+G+Y + G
Sbjct: 189 IGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV 248
Query: 74 AESTALLSVQ 83
S V
Sbjct: 249 GISNYAELVV 258
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 39.0 bits (91), Expect = 2e-05
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVL-----HDSGEYTVRVTNN 70
G P+ ++W+ G + + + SL L IV D G Y N
Sbjct: 35 GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNY 94
Query: 71 SGSAES-TALLSVQG 84
G A S A L V
Sbjct: 95 LGEAVSHDASLEVAA 109
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 39.3 bits (91), Expect = 2e-05
Identities = 9/78 (11%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 18 GDPSMRVD--WFINGRPLP--------ASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ ++ +D W +++ + K +L + + D G YT
Sbjct: 34 TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA 93
Query: 68 TNNSGSAESTALLSVQGR 85
++ + +++ + V +
Sbjct: 94 SSGLMTKKNSTFVRVHEK 111
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 39.7 bits (93), Expect = 3e-05
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 19 DPSMRVDWFI-NGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P V W + NG L +SR +L+ ++L D+G YT VTN +G++ ++
Sbjct: 377 PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS 436
Query: 78 ALLSVQG 84
A L+V
Sbjct: 437 AYLNVST 443
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 37.9 bits (88), Expect = 4e-05
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 18 GDPSM-RVDWFINGRPLPASSRATTTFKFGFISLDLLSIVL-------HDSGEYTVRVTN 69
P R+ W L + + T + ++S + Y N
Sbjct: 39 STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWN 98
Query: 70 NSGSAESTALLSVQG 84
+ GS L QG
Sbjct: 99 SFGSDTEIIRLKEQG 113
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 38.9 bits (90), Expect = 5e-05
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKF------GFISLDLLSIVL-HDSGEYTVRVTNNSG 72
P W+ + + +F G L + ++ + D G+Y T++ G
Sbjct: 112 PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG 171
Query: 73 SAESTALLSVQ 83
S ++ L V+
Sbjct: 172 SDQAIITLRVR 182
Score = 35.8 bits (82), Expect = 6e-04
Identities = 10/77 (12%), Positives = 16/77 (20%), Gaps = 10/77 (12%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
I + W G L + + GEY+
Sbjct: 16 ILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ-------KTEFKVDSDDQWGEYSCVF 68
Query: 68 TNNSGSAESTALLSVQG 84
TA + + G
Sbjct: 69 LPEPM---GTANIQLHG 82
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 37.0 bits (85), Expect = 1e-04
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASS-RATTTFKFGFISLDLLSIVLHDS 60
Q K + D +W + + L + R + D
Sbjct: 56 ITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDE 115
Query: 61 GEYTVRVTNNSGSAESTALLSV 82
G YTV V N G + + V
Sbjct: 116 GVYTVTVKNPVGEDQVNLTVKV 137
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 37.3 bits (86), Expect = 1e-04
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G P V W P S T + S+ L + S ++ N ++
Sbjct: 129 GYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSV--LRLKPQPSRNFSCMFWNAHMKELTS 186
Query: 78 ALLSVQGRRE 87
A++ R E
Sbjct: 187 AIIDPLSRME 196
Score = 35.8 bits (82), Expect = 5e-04
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 9/75 (12%)
Query: 18 GDPSMRVDWFINGRPLPASSRAT---------TTFKFGFISLDLLSIVLHDSGEYTVRVT 68
++ + + G + S+ + DSG+Y V
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 69 NNSGSAESTALLSVQ 83
+ + V+
Sbjct: 88 CGAAWDYKYLTVKVK 102
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 36.5 bits (84), Expect = 3e-04
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 17/83 (20%)
Query: 18 GDPSMRVDWFINGRPL-----------------PASSRATTTFKFGFISLDLLSIVLHDS 60
P + V WF G P L + + +
Sbjct: 20 LGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 79
Query: 61 GEYTVRVTNNSGSAESTALLSVQ 83
G Y R+ LSV
Sbjct: 80 GNYLCRMKLGETEVTKQEHLSVV 102
Score = 32.3 bits (73), Expect = 0.011
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 4/63 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF----GFISLDLLSIVLHDSGEYTVRVTNNSGS 73
P V W + PA + A LS+ T N+
Sbjct: 130 AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 74 AES 76
A
Sbjct: 190 AHG 192
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 35.6 bits (81), Expect = 7e-04
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
G + W +G + + T +L + G Y + + +
Sbjct: 130 GLTDKTIKWLKDGSIISPLNATKNT-------WNLGNNAKDPRGTYQCQGAKETSN 178
Score = 31.8 bits (71), Expect = 0.016
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
D + W NG+ LP + L S V DSG Y ++ +
Sbjct: 24 DSDENLKWEKNGQELPQKHD-------KHLVLQDFSEV-EDSGYYVCYTPASNKN 70
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.8 bits (79), Expect = 0.001
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 8 IHFEARIEPVGDP-SMRVDWFINGRPLPASSRATTTFKF----------GFISLDLLSIV 56
A++ P + WF G+ L S++ F F + L + +V
Sbjct: 30 AVVVAKVNGKELPDKPTIKWF-KGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVV 88
Query: 57 LHDSGEYTVRVTNNSGSAESTALLSVQGRR 86
L D G Y + V + V+ R
Sbjct: 89 LGDRGYYRLEVKAKDTCDSCGFNIDVEAPR 118
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 34.8 bits (79), Expect = 0.002
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ + V W + + L L S+ LHDSG Y+ +G T
Sbjct: 33 PEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYR---AGRPAGT 86
Query: 78 ALLSVQ 83
L V
Sbjct: 87 VHLLVD 92
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 34.4 bits (78), Expect = 0.002
Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
G S W + + T + +L + + + Y T S E
Sbjct: 27 GCESPFFSWR---TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKG 83
Query: 78 ALLSVQGRR 86
+ +
Sbjct: 84 IQVEIYSFP 92
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 34.2 bits (78), Expect = 0.002
Identities = 4/68 (5%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E + + + + L + + T ++++ + + + N
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NLRAPFKCKAVNRVSQE 166
Query: 75 ESTALLSV 82
+++
Sbjct: 167 SEMEVVNC 174
Score = 34.2 bits (78), Expect = 0.002
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI-------SLDLLSIVLHDS 60
I+ + D V W + R F L + ++ DS
Sbjct: 14 INLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDS 73
Query: 61 GEYTVRVTNNSGSAESTALLSVQ 83
G Y V V + +G+ L ++
Sbjct: 74 GTYNVTVYSTNGTRILNKALDLR 96
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 34.1 bits (77), Expect = 0.002
Identities = 7/86 (8%), Positives = 19/86 (22%), Gaps = 21/86 (24%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI---------------------SLDLLSIV 56
+ V W+ T +L + +
Sbjct: 162 DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAK 221
Query: 57 LHDSGEYTVRVTNNSGSAESTALLSV 82
+ D+G + G ++ ++
Sbjct: 222 ITDAGRVWCELATGQGELDADRSSTI 247
Score = 29.5 bits (65), Expect = 0.11
Identities = 13/104 (12%), Positives = 23/104 (22%), Gaps = 34/104 (32%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKF-----------------------------G 46
+ W P ++ + +
Sbjct: 29 ANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA 88
Query: 47 FISLDLLSIVLHDSGEYTVRVTNNS-----GSAESTALLSVQGR 85
+L L + D G Y +V S G + +L V G
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGH 132
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 32.8 bits (74), Expect = 0.003
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 29 NGRPLPASSRATTTFKFGFISLDLL--SIVLHDSGEYTVRVTNNSGS 73
N P ++ + + F + L S L DSG Y + +TN G
Sbjct: 54 NDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGK 100
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 32.7 bits (74), Expect = 0.006
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTF--KFGFISLDLLSIVLHDSG 61
+K ++ F + E + + +V + N + + + G I + + + D G
Sbjct: 51 EKGQVRFWMQAEKLS-SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 109
Query: 62 EYTVRVTNNSGSAESTALL 80
YT ++ + + ST +L
Sbjct: 110 TYTFQIQDGKATGHSTLVL 128
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 33.1 bits (75), Expect = 0.006
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 3/70 (4%)
Query: 18 GDPSMRVDWFIN-GRPLPASSRATTTFKFG--FISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G P V W + + L + T + + F L I + +
Sbjct: 142 GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE 201
Query: 75 ESTALLSVQG 84
TA L +
Sbjct: 202 NHTAELVIPE 211
Score = 27.3 bits (60), Expect = 0.60
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
G +L + + L D+G Y + + G+ + V
Sbjct: 78 GNAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVN 114
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 32.5 bits (73), Expect = 0.008
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 2 DPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI--------SLDLL 53
+ + K+++ + + + N R S + S+ L
Sbjct: 147 EKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ 206
Query: 54 SIVLHDSGEYTVRVTNNSGSAESTALLSVQGRR 86
++ D G YT + + T +L V
Sbjct: 207 TVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Score = 28.7 bits (63), Expect = 0.20
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 20/88 (22%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFI--------------------SLDLLSI 55
RVDW + AS + + SL L +
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 56 VLHDSGEYTVRVTNNSGSAESTALLSVQ 83
D G YT + + S + +
Sbjct: 92 QKADEGIYTCEIRLKNESMVMKKPVELW 119
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 32.7 bits (74), Expect = 0.008
Identities = 6/70 (8%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 14 IEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGS 73
++ + + W N +P T S+ + + + T +
Sbjct: 32 MDYFHVNANYIVWKTNHFTIPKEQY--TIINRTASSVTFTD-IASLNIQLTCNILTFGQL 88
Query: 74 AESTALLSVQ 83
++ +++
Sbjct: 89 EQNVYGITII 98
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 31.9 bits (72), Expect = 0.010
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFI----------SLDLLSIVLHDSGEYTVRVTNNSGS 73
WF+NG L ++ L L ++ DSG V +
Sbjct: 38 GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPG 94
Query: 74 AESTALLSVQG 84
+ +A L++Q
Sbjct: 95 VQDSAALTIQE 105
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 31.4 bits (71), Expect = 0.015
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 18 GDPSMRVDWFINGRPLPA------SSRATT---TFKFGFISLDLLSIVLHDSGEYTVRVT 68
S V + NG+ A R + G ++L + ++ D G YT
Sbjct: 46 SPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFR 105
Query: 69 NNSGSAESTALLSVQG 84
++S E+ L V+
Sbjct: 106 DHSYQEEAAVELKVED 121
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 31.5 bits (70), Expect = 0.026
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF-------GFISLDLLSIVLHDSGEYTVRVTNN 70
W G S + F +SL L + D G Y V
Sbjct: 472 SYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531
Query: 71 SGSAESTAL-LSVQGR 85
E+ A+ ++V+ R
Sbjct: 532 HFYGETAAVYVAVEER 547
Score = 31.1 bits (69), Expect = 0.028
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 18 GDPSMRVDWFINGRPLPASS---RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+ V G+ PA K G S+ + + D+G Y ++
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 75 ESTALLSVQ 83
E + + + Q
Sbjct: 317 EGSPIQAWQ 325
Score = 27.7 bits (60), Expect = 0.46
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKF---GFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G + V + R + S+ + + L D+G+Y + ++S S
Sbjct: 152 GLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN 211
Query: 75 ESTALLSV 82
+ A L V
Sbjct: 212 KKNADLQV 219
Score = 25.7 bits (55), Expect = 2.6
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
G +++ + DSG Y + NS
Sbjct: 73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDV 105
Score = 24.2 bits (51), Expect = 8.4
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
G ++ L + D+G Y ++ + +
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEI 437
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 31.0 bits (70), Expect = 0.030
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFI--SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+++F NG+ S +L + ++ D G+Y +R+ + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM-LHETEDQ 95
Query: 76 STALLSVQ 83
+ V
Sbjct: 96 WKITMEVY 103
Score = 29.1 bits (65), Expect = 0.11
Identities = 3/68 (4%), Positives = 16/68 (23%), Gaps = 11/68 (16%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E + + + + L + + + + + + N
Sbjct: 123 EVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQE 171
Query: 75 ESTALLSV 82
+++
Sbjct: 172 SEMEVVNC 179
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 29.9 bits (67), Expect = 0.060
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAES 76
+L + + D+ Y +RV +G+ +
Sbjct: 74 ALYISKVQKEDNSTYIMRVLKKTGNEQE 101
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 29.8 bits (67), Expect = 0.064
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
S+++ ++ L D G Y +V G A L V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 29.5 bits (66), Expect = 0.064
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 49 SLDLLSIVLHDSGEYTVRV-TNNSGSAESTALLSVQG 84
L L S+ ++D+GEY T G+ L V
Sbjct: 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 29.9 bits (67), Expect = 0.075
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 16/80 (20%)
Query: 16 PVGDPSMRVDWFINGRPL------------PASSRATTTFKFGFISLDLLSIVLHDSGEY 63
P P V W + +R G SL + ++ D EY
Sbjct: 18 PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEY 75
Query: 64 TVRVTNNSGSAESTALLSVQ 83
+ N + + + L V
Sbjct: 76 EMESPNITDTMKFF--LYVL 93
Score = 24.5 bits (53), Expect = 5.5
Identities = 4/68 (5%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
E + + + + L + + T ++++ + + + N
Sbjct: 113 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQW-----------TNLRAPFKCKAVNRVSQE 161
Query: 75 ESTALLSV 82
+++
Sbjct: 162 SEMEVVNC 169
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 29.2 bits (65), Expect = 0.13
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALL 80
SL L ++ + D+G Y +++ + + S+ L
Sbjct: 71 SLQLSNLKMEDTGSYRAQISTKTSAKLSSYTL 102
Score = 28.4 bits (63), Expect = 0.20
Identities = 8/65 (12%), Positives = 16/65 (24%), Gaps = 10/65 (15%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
D ++ W G L + T + + +YT N + +
Sbjct: 136 ADDNVSFRWEALGNTLSSQPNLTVS----------WDPRISSEQDYTCIAENAVSNLSFS 185
Query: 78 ALLSV 82
Sbjct: 186 VSAQK 190
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 28.6 bits (63), Expect = 0.14
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 17/86 (19%)
Query: 14 IEPVGDPSMRVDWFINGRPL----PASSRATTTFKF------------GFISLDLLSI-V 56
+E + V W GR + A +++T F G SL +
Sbjct: 28 MEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDA 87
Query: 57 LHDSGEYTVRVTNNSGSAESTALLSV 82
+ +G YT VT + E+ L
Sbjct: 88 VSHTGNYTCEVTELTREGETIIELKY 113
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 27.6 bits (61), Expect = 0.28
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 49 SLDLLSIVLHDSGEYTVRVTN-NSGSAESTALLSV 82
SL + +I+ +D+G YT+ V + + E+T V
Sbjct: 73 SLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 28.1 bits (62), Expect = 0.32
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 2 DPQKRKIHFEARIEPVGDPSMRVDW----FINGRPLPASSRATTTF 43
+P R + + S+RV+ +NG+P +SS+A+ T
Sbjct: 422 EPNLRHHQIRHKGKDYSFSSVRVETPLLLVVNGKPQNSSSQASATV 467
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin;
HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1
b.1.2.1
Length = 313
Score = 28.0 bits (61), Expect = 0.35
Identities = 8/66 (12%), Positives = 16/66 (24%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
DP ++ W + P + + + L + + NS
Sbjct: 31 LDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQ 90
Query: 78 ALLSVQ 83
L
Sbjct: 91 VELRAG 96
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 27.5 bits (60), Expect = 0.54
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG--SAE 75
P + W N S T + ++L T ++ + E
Sbjct: 153 AGPPLTFSWTGNAL----SPLDPETTRSSELTLTPRP--EDHGTNLTCQMKRQGAQVTTE 206
Query: 76 STALLSV 82
T L+V
Sbjct: 207 RTVQLNV 213
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 27.5 bits (60), Expect = 0.64
Identities = 5/73 (6%), Positives = 17/73 (23%), Gaps = 1/73 (1%)
Query: 11 EARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
E ++ + + W N +P ++ ++ L+ +
Sbjct: 30 EKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIAS-LNIQLTCNILTFGQ 88
Query: 71 SGSAESTALLSVQ 83
+
Sbjct: 89 LEQNVYGITIISG 101
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.1 bits (59), Expect = 0.65
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 61 GEYTVRVT--NNSGSAESTALLSVQG 84
G Y V V N +G E+ + V G
Sbjct: 94 GIYRVSVRAENTAGHDEAVLFVQVSG 119
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 26.9 bits (59), Expect = 0.68
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 18 GDPSMRVDW--------FINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVRVT 68
+ + W F+N P+ +S+ +S+ + ++ L D G Y
Sbjct: 27 LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY 86
Query: 69 NNSGSAESTALLSVQGRREGEV 90
++S S + V +GE
Sbjct: 87 SDSVS-TKEVKVIVLATMKGEF 107
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.1 bits (59), Expect = 0.79
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLD----------LLSIVL---HDSGEYT 64
G+P+ ++ W+ NG+ L ++ L + L +
Sbjct: 146 GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFH 205
Query: 65 VRVTNNSGSAESTALLSVQ 83
+ L S
Sbjct: 206 CAAHYSLPEGRHGRLDSPT 224
Score = 26.3 bits (57), Expect = 1.4
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 13 RIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFI-----SLDLLSIVLHDSGEYTVRV 67
+ G + G L + T + L L + D +Y V
Sbjct: 37 LTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVV 96
Query: 68 -TNNSGSAESTALLSVQG 84
+G+AE+TA L+V
Sbjct: 97 RAGAAGTAEATARLNVFA 114
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 27.0 bits (59), Expect = 0.89
Identities = 17/73 (23%), Positives = 19/73 (26%), Gaps = 6/73 (8%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLH-----DSGEYTVRV-TNNS 71
SM V G S R L S+ + D G YT T
Sbjct: 43 ESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQ 102
Query: 72 GSAESTALLSVQG 84
GS L V
Sbjct: 103 GSRSVDIWLRVLA 115
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 26.5 bits (58), Expect = 1.3
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 2/66 (3%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFG--FISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P + W NG L A + + + L + + + + T
Sbjct: 135 PEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQT 194
Query: 78 ALLSVQ 83
+
Sbjct: 195 FNWNTA 200
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 26.0 bits (56), Expect = 1.3
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 29 NGRPLPASSRATTTFK----FGFISLDLLSIVLHDSGEYTVRVTNNSGSAES 76
PL + T+++ L I L D+G Y+ NS S
Sbjct: 56 IWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINS 107
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 26.0 bits (57), Expect = 1.3
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 38 RATTTFKFGFISLDLLSIVLHDSGEYTVRV-TNNSGSAESTALLSVQ 83
T+F +L L ++ + D G Y + ++ +
Sbjct: 59 MGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX,
paired domain, DNA-binding protein, gene regulation/DNA
complex; HET: DNA; 2.50A {Drosophila melanogaster}
SCOP: a.4.1.5
Length = 128
Score = 25.8 bits (56), Expect = 1.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 27 FINGRPLPASSR 38
FINGRPLP + R
Sbjct: 12 FINGRPLPNNIR 23
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 25.3 bits (55), Expect = 2.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
G +SL + + V+ D G Y V +L V+
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVK 109
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription
factor, transcription/DNA complex; 2.25A {Homo sapiens}
SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Length = 149
Score = 25.5 bits (55), Expect = 2.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 27 FINGRPLPASSR 38
F+NGRPLP R
Sbjct: 27 FVNGRPLPDVVR 38
>2k27_A Paired box protein PAX-8; paired domain, solution structure,
triple frequency, 3D NMR, induced FIT, alternative
splicing, developmental protein; NMR {Homo sapiens}
Length = 159
Score = 25.2 bits (54), Expect = 2.7
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 27 FINGRPLPASSR 38
F+NGRPLP R
Sbjct: 20 FVNGRPLPEVVR 31
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 24.9 bits (54), Expect = 2.9
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+L + + + D+G+Y + + +T
Sbjct: 73 NLVISDLRMEDAGDYKADINTQADPYTTT 101
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 3.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 5 KRKIHFEARIEPVGDP 20
+RK+ F R PV P
Sbjct: 411 ERKLKFSNRFLPVASP 426
Score = 25.0 bits (54), Expect = 4.0
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 21 SMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYT-VRV----TNNSGSAE 75
+ V W +AT FG L ++ H + + T VRV T + +
Sbjct: 485 RLPVKW-----ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 24.2 bits (52), Expect = 8.9
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 22/75 (29%)
Query: 25 DW--FINGRPLPASSRATTT-FKFG------FISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
W F + +A T F G + + L +L DS + NN G
Sbjct: 288 SWESFFV-----SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS------LENNEGVP- 335
Query: 76 STALLSVQGRREGEV 90
+ +LS+ + +V
Sbjct: 336 -SPMLSISNLTQEQV 349
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 25.4 bits (55), Expect = 3.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDL 52
P+ ++ F+ GR +F G DL
Sbjct: 419 PAQKIGDFLKGRDPSQLGDVEPSFTPGIKLTDL 451
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 24.8 bits (54), Expect = 3.3
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+L + ++ D G Y +RV + + L
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETENELKITL 104
>3b7k_A Acyl-coenzyme A thioesterase 12; hotdog fold, structural genomics,
structural genomics consor SGC, fatty acid metabolism,
hydrolase; HET: COA; 2.70A {Homo sapiens}
Length = 333
Score = 25.1 bits (55), Expect = 3.4
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 8 IHFEARIEPVGDPSM----RVDWFINGRPLPASSRATTTFKFGFISLD 51
+ F A + + RV+ F R + + + D
Sbjct: 262 LVFTAIVNNTFQTCVEVGVRVEAFDCQEWAEGRGRHINSAFLIYNAAD 309
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome,
unknown function; 1.72A {Clostridium thermocellum} PDB:
3pdg_A
Length = 190
Score = 24.9 bits (54), Expect = 4.3
Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 12/63 (19%)
Query: 23 RVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYT--VRVTNNSGSAESTALL 80
+V+++ + + + A T I G Y + G + +
Sbjct: 33 KVEFYNGDTLISSDTTAPYTA----------KITGAAVGAYNLKAVAVLSDGRRIESPVT 82
Query: 81 SVQ 83
V
Sbjct: 83 PVL 85
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 24.0 bits (51), Expect = 7.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+L L + D G Y +V S E
Sbjct: 93 TLRLTHVHPQDGGRYWCQVAQWSIRTE 119
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 23.8 bits (51), Expect = 7.4
Identities = 7/38 (18%), Positives = 17/38 (44%)
Query: 46 GFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
S+ + ++ D+G +T V N T+ +++
Sbjct: 79 KDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLY 116
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain,
beta barrel, collagen RECO domain, hydrolase; 1.18A
{Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Length = 85
Score = 23.4 bits (51), Expect = 7.6
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 59 DSGEYTVR--VTNNSGSAEST 77
+G Y V VT++ G+ +
Sbjct: 57 KAGTYNVTLKVTDDKGATATE 77
>1ny7_2 Cowpea mosaic virus, large (L) subunit; comovirus, viral coat
protein, cowpea mosaic virus (CPMV), icosahedral virus;
3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 b.121.4.2
PDB: 2bfu_L
Length = 369
Score = 24.0 bits (51), Expect = 8.5
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 16 PVGDPSMRVDWFINGRPLPAS 36
P D ++DW I +
Sbjct: 160 PTTDVIAKLDWSIVNEKCEPT 180
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase;
1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Length = 923
Score = 24.0 bits (51), Expect = 9.6
Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 6/49 (12%)
Query: 44 KFGFISLDLLSIVL------HDSGEYTVRVTNNSGSAESTALLSVQGRR 86
++ +++ + L R N S LS+
Sbjct: 843 EYSYLTGTNDQVALTAFKRRLADNALITRSYNLSNDKTCDFSLSLPNYN 891
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0574 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,328,546
Number of extensions: 65347
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 558
Number of HSP's successfully gapped: 342
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)