RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16902
(90 letters)
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 55.2 bits (132), Expect = 3e-12
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 7 KIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+ ++ G + W + + S L +L+ G YT+
Sbjct: 17 SVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLL 74
Query: 67 VTNNSGSAESTALLSVQGR 85
V N GS ++ L+V +
Sbjct: 75 VENKLGSRQAQVNLTVVDK 93
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 51.7 bits (123), Expect = 5e-11
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSR-ATTTFKFGFISLDLLSIVLHDSGEYTVR 66
+ F G+P + W NG+ R + SL + S+V D G YT
Sbjct: 23 VKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 80
Query: 67 VTNNSGSAESTALLSV 82
V N GS T L V
Sbjct: 81 VENEYGSINHTYHLDV 96
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 49.9 bits (118), Expect = 4e-10
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+F R+ V W + R L S + + L + + D GEYTVR
Sbjct: 19 ANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRA 76
Query: 68 TNNSGSAESTALLSVQGRRE 87
N+ G+ E L+V E
Sbjct: 77 KNSYGTKEEIVFLNVTRHSE 96
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 48.7 bits (115), Expect = 9e-10
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIV-LHDSGEYTVR 66
HF R+ G P +W+ NG + S R + + ++ V DS V+
Sbjct: 22 AHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79
Query: 67 VTNNSGSAESTALLSVQGR 85
N +G S A L VQ +
Sbjct: 80 AINIAGETSSHAFLLVQAK 98
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 48.3 bits (114), Expect = 1e-09
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
F + G+P V W G+ L S+R T + ++ S+ D G Y+V V
Sbjct: 17 ARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVV 74
Query: 68 TNNSGSAESTALLSVQ 83
N+ G E+ L++Q
Sbjct: 75 ENSEGKQEAEFTLTIQ 90
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 46.3 bits (109), Expect = 6e-09
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ ++ G P+ V W N +PL L + + D G Y R
Sbjct: 21 VTIPCKVT--GLPAPNVVWSHNAKPLSGGR-----ATVTDSGLVIKGVKNGDKGYYGCRA 73
Query: 68 TNNSGSAESTALLSV 82
TN G L+ V
Sbjct: 74 TNEHGDKYFETLVQV 88
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 44.9 bits (105), Expect = 3e-08
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRP--LPASSRATTTFKFGFISLDLLSIVLHDSGEYTV 65
+ + G P + W +G P F L + ++ +D EY
Sbjct: 23 VTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80
Query: 66 RVTNNSGSAESTALLSVQGR 85
N +G +++ L V +
Sbjct: 81 IAENKAGEQDASIHLKVFAK 100
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId:
9103]}
Length = 102
Score = 43.7 bits (102), Expect = 1e-07
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
F+ ++E DP + N + + G SL + + D +YT +
Sbjct: 26 ARFDCKVEGYPDPEVMWFKDDNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 84
Query: 68 TNNSGSAESTALLSVQ 83
N+ G A TA L V+
Sbjct: 85 VNSLGEATCTAELLVE 100
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.1 bits (98), Expect = 3e-07
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 17 VGDPSMRVDWFINGRPLPASSRA--TTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
V + V WF NG + ++ + L + D+ EY+V T SA
Sbjct: 24 VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSA 83
Query: 75 ESTALLSVQGR 85
+ LSV +
Sbjct: 84 K----LSVDLK 90
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 41.9 bits (97), Expect = 4e-07
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 3 PQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE 62
Q + + +E + +P ++ + + L L S+ D+G
Sbjct: 9 SQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68
Query: 63 YTVRVTNNSGSAES-TALLSVQG 84
Y +V + + S L+V+G
Sbjct: 69 YWCQVEDGGETEISQPVWLTVEG 91
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.9 bits (97), Expect = 5e-07
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLD-------LLSIVLHDSGEYTVRVTNN 70
G P WF +G +P + ++T F L+ + D+GEY+ N
Sbjct: 29 GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNG 88
Query: 71 SGSAESTALLSVQ 83
G+ ++ + ++
Sbjct: 89 YGTPMTSNAVRME 101
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 41.6 bits (96), Expect = 9e-07
Identities = 11/61 (18%), Positives = 14/61 (22%)
Query: 22 MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLS 81
F R + D G YTV V N G + +
Sbjct: 68 SDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
Query: 82 V 82
V
Sbjct: 128 V 128
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 41.1 bits (95), Expect = 9e-07
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 16 PVGDPSMRVDWFINGRPLPASS--------RATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
G P WF +G + + ++ T L + DSGEY +
Sbjct: 27 HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQA 86
Query: 68 TNNSGSAESTALLSVQ 83
N G+A + +
Sbjct: 87 QNGYGTAMRSEAAHMD 102
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 40.6 bits (94), Expect = 1e-06
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + G P V W +G+PL + +R + S +VL DSG Y
Sbjct: 19 LRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGGELRFS----KLVLEDSGMYQCVA 72
Query: 68 TNNSGSAESTALLSVQ 83
N G+ ++A L+VQ
Sbjct: 73 ENKHGTVYASAELTVQ 88
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 40.7 bits (94), Expect = 1e-06
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPAS-------------SRATTTFKFGFISLDLLS 54
+ F ++ D + W + + + T L + +
Sbjct: 23 VEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80
Query: 55 IVLHDSGEYTVRVTNNSGSAESTALLSV 82
+ D+GEYT N+ G + +A L+V
Sbjct: 81 VTFEDAGEYTCLAGNSIGISFHSAWLTV 108
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 39.8 bits (92), Expect = 3e-06
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 20/96 (20%)
Query: 4 QKRKIHFEARIEP---------------VGDPSMRVDWFINGRPLPASSRATTTFKFGFI 48
+K+ F+ ++EP + D V W NG+ + S G
Sbjct: 2 EKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 61
Query: 49 -SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
+L + L D Y V S E L V+
Sbjct: 62 RTLTISQCSLADDAAYQCVVGGEKCSTE----LFVK 93
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 39.4 bits (91), Expect = 4e-06
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ E G+P ++ W + + L + ++ D G Y
Sbjct: 23 VTLECFAF--GNPVPQIKWRKLDGSQT------SKWLSSEPLLHIQNVDFEDEGTYECEA 74
Query: 68 TNNSGSAESTALLSVQ 83
N G + +
Sbjct: 75 ENIKGRDTYQGRIIIH 90
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 39.6 bits (91), Expect = 4e-06
Identities = 10/64 (15%), Positives = 15/64 (23%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
G+ L K L + +G Y V+ S
Sbjct: 44 GKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFN 103
Query: 80 LSVQ 83
L+V
Sbjct: 104 LTVH 107
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 39.6 bits (91), Expect = 5e-06
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 43 FKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
G ++L + ++ D G YT ++S E+ L V+
Sbjct: 76 IGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 116
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 39.2 bits (90), Expect = 5e-06
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 18 GDPSMRVDWFINGRPLPASSRAT-----TTFKFGFISLDLLSIVLHDSGEYTVRVTNNSG 72
G+P + WF NG L S T L L + ++G+YT+ N G
Sbjct: 27 GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG 86
Query: 73 SAESTALLSVQGR 85
E G
Sbjct: 87 KDEKQISAHFMGW 99
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.1 bits (90), Expect = 5e-06
Identities = 11/71 (15%), Positives = 20/71 (28%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
+ + W+ + P S+ + L + + DSG Y V N+S
Sbjct: 29 NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88
Query: 78 ALLSVQGRREG 88
Sbjct: 89 ISAKFVENEPN 99
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 39.2 bits (90), Expect = 5e-06
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 18 GDPSMRVDWFINGRPLPASSR-------ATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
G P+ + W NG L +S L L ++G YT+ N
Sbjct: 26 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85
Query: 71 SGSAESTALLSVQGR 85
G A ++ + +
Sbjct: 86 FGQASASIMAAFMDN 100
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 38.9 bits (89), Expect = 7e-06
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 18 GDPSMRVDWF---INGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
G + I+ R P T+ + S ++++ D+G+Y + G
Sbjct: 27 GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86
Query: 75 ES-TALLSVQ 83
S A L V+
Sbjct: 87 ISNYAELVVK 96
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 37.3 bits (85), Expect = 2e-05
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAEST 77
P+ + W S L + ++ D+G Y +N + T
Sbjct: 29 KSPAYTLVWTRLHNGKLPSR-----AMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 83
Query: 78 ALLSVQ 83
A L VQ
Sbjct: 84 ATLHVQ 89
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 37.3 bits (85), Expect = 3e-05
Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ E G P W + + K S+ S DSG Y ++V
Sbjct: 20 HNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKV 77
Query: 68 TNNSGSAESTALLSVQ 83
N G E+ + VQ
Sbjct: 78 KNELGEDEAIFEVIVQ 93
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 36.1 bits (82), Expect = 6e-05
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 10/67 (14%)
Query: 18 GDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAES- 76
+ + W+ + + + + + S ++ N G A S
Sbjct: 28 PPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV---------TQSTMFSCEAHNLKGLASSR 78
Query: 77 TALLSVQ 83
TA + +Q
Sbjct: 79 TATVHLQ 85
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 35.4 bits (80), Expect = 2e-04
Identities = 6/52 (11%), Positives = 13/52 (25%)
Query: 36 SSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQGRRE 87
+ + ++ + +G Y VT + L V
Sbjct: 56 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG 107
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 34.2 bits (77), Expect = 3e-04
Identities = 8/69 (11%), Positives = 18/69 (26%), Gaps = 13/69 (18%)
Query: 15 EPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA 74
+ G+P + F + +++ G Y R + G
Sbjct: 27 QAWGNPLPELKC-------------LKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEV 73
Query: 75 ESTALLSVQ 83
++V
Sbjct: 74 TREVTVNVL 82
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 33.9 bits (77), Expect = 5e-04
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 1 MDPQKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDS 60
M ++ +E V F S A G L + ++ DS
Sbjct: 22 MTDDIDEVRWERGS-------TLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDS 72
Query: 61 GEYTVRVTNNSGSAESTALLSVQ 83
G Y V V + +G+ L ++
Sbjct: 73 GTYNVTVYSTNGTRILNKALDLR 95
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 33.6 bits (76), Expect = 5e-04
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
HFE + +P + W + G+PL AS L L + L +GE + +
Sbjct: 19 AHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA 75
Query: 68 TNNSGSAESTALLSVQ 83
N +A L V+
Sbjct: 76 ANAKSAAN----LKVK 87
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 33.3 bits (75), Expect = 8e-04
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 4 QKRKIHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEY 63
+ K+ R +P W +NG L + + + D+G Y
Sbjct: 21 AEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSY 77
Query: 64 TVRVTNNSGSAES-TALL 80
TN G+ S A L
Sbjct: 78 QCVATNARGTVVSREASL 95
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 32.7 bits (73), Expect = 0.001
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 22 MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHD-SGEYTVRVTNNSGSAESTALL 80
D + SR + G L + ++ + G+Y T++ GS ++ L
Sbjct: 39 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98
Query: 81 SV 82
V
Sbjct: 99 RV 100
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 32.3 bits (72), Expect = 0.002
Identities = 9/61 (14%), Positives = 14/61 (22%)
Query: 19 DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTA 78
+ + + SL L D G Y +G A S
Sbjct: 29 NDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV 88
Query: 79 L 79
+
Sbjct: 89 I 89
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 32.0 bits (71), Expect = 0.002
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 5/67 (7%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
D V W G L + + L +G + + +
Sbjct: 28 ACADRGASVQWRGLDTS-----LGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQ 82
Query: 76 STALLSV 82
T L V
Sbjct: 83 HTVQLLV 89
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 32.0 bits (71), Expect = 0.003
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 58 HDSGEYTVRVTNNSGSAESTALLSVQGR 85
Y N+ GS L QG
Sbjct: 80 DFQTIYNCTAWNSFGSDTEIIRLKEQGS 107
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.0 bits (69), Expect = 0.006
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 22 MRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ + +S + SL + ++ D EY + N + + +
Sbjct: 34 KVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK 87
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 30.3 bits (67), Expect = 0.010
Identities = 8/75 (10%), Positives = 15/75 (20%), Gaps = 3/75 (4%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
+ + W GR + + I D G Y
Sbjct: 19 AVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKTDEGTYRCEG 75
Query: 68 TNNSGSAESTALLSV 82
+ + + V
Sbjct: 76 RILARGEINFKDIQV 90
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 30.2 bits (67), Expect = 0.011
Identities = 6/79 (7%), Positives = 21/79 (26%), Gaps = 4/79 (5%)
Query: 6 RKIHFEARIEPVG-DPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYT 64
+++ ++E + V + L ++ +L H +++
Sbjct: 20 KQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEP---AEVTTTVLVRRDHHGAQFS 76
Query: 65 VRVTNNSGSAESTALLSVQ 83
R + +
Sbjct: 77 CRTELDLRPQGLELFENTS 95
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 30.0 bits (66), Expect = 0.012
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 58 HDSGEYTVRVTNNSGSAESTALLSVQGRRE 87
DSG +T V N E + V ++
Sbjct: 55 QDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 84
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor
receptor TrkA, different domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 29.7 bits (65), Expect = 0.017
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAESTAL 79
+ W + A+ + ++L + T N+ G AE +
Sbjct: 30 GLEQAGWILTELEQSATVMKSGGLPSLGLTL-ANVTSDLNRKNVTCWAENDVGRAEVSVQ 88
Query: 80 LSV 82
++V
Sbjct: 89 VNV 91
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 29.3 bits (65), Expect = 0.024
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 45 FGFISLDLLSIVLHDSGEYTVRVTN-NSGSAESTALLSV 82
+ SL I + D G YT+ +T+ N ++T V
Sbjct: 68 YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 29.2 bits (64), Expect = 0.042
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
S+++ ++ L D G Y +V G A L V
Sbjct: 89 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 28.3 bits (62), Expect = 0.051
Identities = 12/76 (15%), Positives = 18/76 (23%), Gaps = 1/76 (1%)
Query: 8 IHFEARIEPVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRV 67
R T + L + + D G YT V
Sbjct: 21 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 80
Query: 68 TNNSGSAES-TALLSV 82
N G + + L+V
Sbjct: 81 DNGVGKPQKHSLKLTV 96
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 28.5 bits (62), Expect = 0.063
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
+ S+ D+GEYT V+ G + +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 28.1 bits (61), Expect = 0.088
Identities = 10/67 (14%), Positives = 20/67 (29%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
P P++ W +N P + +L + D G Y+ T++
Sbjct: 29 PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 88
Query: 76 STALLSV 82
+
Sbjct: 89 KSVFSKF 95
>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 26.1 bits (57), Expect = 0.38
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 4/53 (7%)
Query: 20 PSMRVDWFINGRPLPASSRATTTF----KFGFISLDLLSIVLHDSGEYTVRVT 68
++ + W + +P+ A + L++ + YT +V
Sbjct: 30 QNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVE 82
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 25.5 bits (54), Expect = 0.65
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 50 LDLLSIVLHDSGEYTVRVTNNSGSAESTALLSVQ 83
+ S+ D+G YT V+ G++ + +
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103
>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DR group [TaxId:
9606]}
Length = 98
Score = 25.4 bits (55), Expect = 0.72
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE---YTVRVT 68
S+ V WF NG+ +T + G + L ++ YT +V
Sbjct: 33 GSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVE 84
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 24.4 bits (52), Expect = 1.7
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 38 RATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSA-----ESTALLSV 82
T+F +L L ++ + D G Y + + + + + LSV
Sbjct: 59 MGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSV 108
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 24.2 bits (52), Expect = 1.8
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 58 HDSGEYTVR--VTNNSGSAESTALLSVQ 83
G Y V + +GSA + V+
Sbjct: 52 VLPGRYHVTAVLALGAGSALLGTDVQVE 79
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.7 bits (51), Expect = 2.2
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE---YTVRVT 68
+ + W +NG L T G + + V+ G+ YT V
Sbjct: 30 ADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVY 81
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 24.1 bits (51), Expect = 2.2
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 16 PVGDPSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNNSGSAE 75
+ + V W + + L L S+ LHDSG Y+
Sbjct: 31 VEPEDNATVHWVLRKPAAGSHPSRWA---GMGRRLLLRSVQLHDSGNYSCYRAG---RPA 84
Query: 76 STALLSVQ 83
T L V
Sbjct: 85 GTVHLLVD 92
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.0 bits (50), Expect = 2.7
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 49 SLDLLSIVLHDSGEYTVRVTNNSGSAESTALLSV 82
+L + + + Y T S E + +
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 23.4 bits (50), Expect = 3.4
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 20 PSMRVDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGE---YTVRVT 68
++V WF N + A +T + G + +L ++ YT V
Sbjct: 31 GQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVE 82
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 22.7 bits (49), Expect = 4.3
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 27 FINGRPLPASSR 38
F+NGRPLP R
Sbjct: 9 FVNGRPLPDVVR 20
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 123
Score = 23.0 bits (49), Expect = 5.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 27 FINGRPLPASSR 38
FINGRPLP + R
Sbjct: 11 FINGRPLPNNIR 22
>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
bicolor) [TaxId: 4558]}
Length = 425
Score = 22.8 bits (48), Expect = 7.9
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 27 FINGRPLPA 35
F+ G P+PA
Sbjct: 416 FLKGEPMPA 424
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 22.5 bits (47), Expect = 10.0
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 9/47 (19%)
Query: 24 VDWFINGRPLPASSRATTTFKFGFISLDLLSIVLHDSGEYTVRVTNN 70
V W I + SS F+ S++ + G+ V + +N
Sbjct: 205 VTWIICKESISVSSEQLAQFR---------SLLSNVEGDNAVPMQHN 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.387
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 322,154
Number of extensions: 12478
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 62
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.5 bits)