RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16903
(421 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 174 bits (443), Expect = 1e-49
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 43/276 (15%)
Query: 153 CGAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKA------------- 199
G +W R+ +TPTF F E+ + LV+KL
Sbjct: 91 NGPRWRQLRRFLTPTFTSFGKLSFEPRVEEEARDLVEKLRKTAGEPGVIDITDLLFRAAL 150
Query: 200 ---FDTAMGIEINAQRDSK-SDYVRAVYEISELTIVRSLRPWLWHPLV-FKWTKYGRRYN 254
G + D K + V+AV E+S L S + P++ + +GR+
Sbjct: 151 NVICSILFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLK 210
Query: 255 QCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHAS 314
+ + +K+I+ER++ L D KK FLD LL A E
Sbjct: 211 RARKKIKDLLDKLIEERRETL-----------------DSAKKSPRDFLDALLLAKEEED 253
Query: 315 -TPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRK 373
+ LTD E+R V F G DTT++ + W+L+ L HP Q+K+ E+D + + R
Sbjct: 254 GSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKHPEVQEKLREEIDEVIGD--KRS 311
Query: 374 ITMRDLNDMKYLERVIKE-----DLIPTIRTKYALN 404
T DL +M YL+ VIKE ++P + +
Sbjct: 312 PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTK 347
Score = 51.1 bits (123), Expect = 6e-07
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 2 AMGIEINAQRDSK-SDYVRAVYEISELTIVRSLRPWLWHPLV-FKWTKYGRRYNQCLSVL 59
G + D K + V+AV E+S L S + P++ + +GR+ + +
Sbjct: 157 LFGERFGSLEDPKFLELVKAVQELSSLLSSPSPQLLDLFPILKYFPGPHGRKLKRARKKI 216
Query: 60 HGFTNKVIKERKQLLEEKKNI 80
+K+I+ER++ L+ K
Sbjct: 217 KDLLDKLIEERRETLDSAKKS 237
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 75.6 bits (186), Expect = 1e-14
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 32/258 (12%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVD-VFVEKCQILVDKL-GDKCDGKAFDT--------- 202
G W + R+ + P+ H + L V VD VF + + LV+KL G+A +
Sbjct: 104 GELWTARRRAVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTL 163
Query: 203 -AMGIEI-NAQRDS---KSDYVRAVYEISELTIVRS--LRPWLWHPLVFKWTKYGRRYNQ 255
+G+ + N DS S ++AVY + RS L P+ + K + + +
Sbjct: 164 DVIGLSVFNYNFDSLTTDSPVIQAVYTALKEAETRSTDLLPYWKVDFLCKISPRQIKAEK 223
Query: 256 CLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHAST 315
++V+ ++ + K+++E + + E E+ + L LL + E S+
Sbjct: 224 AVTVIRETVEDLVDKCKEIVEAEGEVI-------EGEEYVNDSDPSVLRFLLASREEVSS 276
Query: 316 PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKIT 375
V++R+++ + + GH+TT + + W+L+LL +P K ELD + R T
Sbjct: 277 ----VQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQ---GRPPT 329
Query: 376 MRDLNDMKYLERVIKEDL 393
D+ ++KYL R I E +
Sbjct: 330 YEDIKELKYLTRCINESM 347
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 73.2 bits (180), Expect = 3e-14
Identities = 54/249 (21%), Positives = 83/249 (33%), Gaps = 67/249 (26%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTA---------- 203
G + RK++ P F + L + + E L+D L D A
Sbjct: 96 GPEHTRLRKLLAPAFTPRALRGYRPLIREIADRLLDDLWQGGADLVLDFAAELTLRVIAE 155
Query: 204 -MGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 262
+G+ + R ++ L P L + RR L
Sbjct: 156 LLGVPLED---------RPQLLRWSDALLLRLDPDLGPEEPW------RRARAARRELDA 200
Query: 263 FTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEI 322
+ +I ER+ +DL L LLL A + L+D EI
Sbjct: 201 YLRALIAERR---------------AAPRDDL--------LSLLLSAEDDGGGRLSDDEI 237
Query: 323 REEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDM 382
R+E+ T + GH+TT + W+L+ L HP K+ AE D
Sbjct: 238 RDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAEP------------------DR 279
Query: 383 KYLERVIKE 391
LE V++E
Sbjct: 280 PLLEAVVEE 288
Score = 28.2 bits (63), Expect = 8.6
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 100 SVITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
++ P F + L + + E L+D L G A V F + +I
Sbjct: 104 KLLAPAFTPRALRGYRPLIREIADRLLDDLWQ---GGADLVLDFAAELTLRVIA 154
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 69.2 bits (169), Expect = 1e-12
Identities = 63/258 (24%), Positives = 113/258 (43%), Gaps = 34/258 (13%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAM-------GI 206
G W R+ I P H K + + +F + L KL D D M +
Sbjct: 219 GEIWRVRRRAIVPALHQKYVAAMISLFGQASDRLCQKL-DAAASDGEDVEMESLFSRLTL 277
Query: 207 EI------NAQRDSKSD---YVRAVYEISELTIVRSLRPW-LWH-PLVFKWTKYGRRYNQ 255
+I N DS S+ V AVY + RS+ P +W P+ + R+ +
Sbjct: 278 DIIGKAVFNYDFDSLSNDTGIVEAVYTVLREAEDRSVSPIPVWEIPIWKDISPRQRKVAE 337
Query: 256 CLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHAST 315
L +++ + +I K+++EE+ + E+ ++ + L LL + + S+
Sbjct: 338 ALKLINDTLDDLIAICKRMVEEE--------ELQFHEEYMNERDPSILHFLLASGDDVSS 389
Query: 316 PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKIT 375
++R+++ T + GH+T+ A + W+ +LL P K+ E+D++ DR T
Sbjct: 390 K----QLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLG---DRFPT 442
Query: 376 MRDLNDMKYLERVIKEDL 393
+ D+ +KY RVI E L
Sbjct: 443 IEDMKKLKYTTRVINESL 460
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 68.2 bits (167), Expect = 2e-12
Identities = 41/137 (29%), Positives = 73/137 (53%), Gaps = 5/137 (3%)
Query: 260 LHGFT-NKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
L GF ++ +K RK+L+ ++I ++ ++ + +KK M LDLLL+A + L
Sbjct: 227 LPGFAYHRALKARKKLVALFQSIVDERRNSRKQNISPRKKDM--LDLLLDAEDENGRKLD 284
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDP--DRKITM 376
D EI + + ++ GH+++ W+ L HP K AE + I + P + +T+
Sbjct: 285 DEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTL 344
Query: 377 RDLNDMKYLERVIKEDL 393
+D+ M+YL +VI E L
Sbjct: 345 KDVRKMEYLSQVIDETL 361
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 56.4 bits (136), Expect = 1e-08
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 322 IREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLND 381
I +E TF F GH+TT + W+L LL S+P +QDKV AE+ + + ++ L+
Sbjct: 317 IMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGETP---SVDHLSK 373
Query: 382 MKYLERVIKEDL 393
+ L VI E L
Sbjct: 374 LTLLNMVINESL 385
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 53.6 bits (129), Expect = 1e-07
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 255 QCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHAS 314
+ + V+ FT VI+ RK ++E + G KK + L +E E
Sbjct: 239 KSIKVVDDFTYSVIRRRKAEMDEARKSG-------------KKVKHDILSRFIELGEDPD 285
Query: 315 TPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKI 374
+ TD +R+ V F+ G DTT + W ++++ +PH +K+ +EL ++ ++
Sbjct: 286 SNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKA-LEKERAKEE 344
Query: 375 TMRDLNDMKYLERVIKE 391
D D + + + +
Sbjct: 345 ---DPEDSQSFNQRVTQ 358
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 52.5 bits (126), Expect = 3e-07
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 263 FTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLE-ASEHASTPLTDVE 321
F +K+I E ++ K G D M F+D+LL E+ + DVE
Sbjct: 252 FHDKIIDEHRRARSGKLPGGKD---------------MDFVDVLLSLPGENGKEHMDDVE 296
Query: 322 IREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLND 381
I+ + + DT+ W++ + +P K+ ELD++ +R + DL
Sbjct: 297 IKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVG--RNRMVQESDLVH 354
Query: 382 MKYLERVIKE 391
+ YL V++E
Sbjct: 355 LNYLRCVVRE 364
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 50.5 bits (121), Expect = 9e-07
Identities = 49/170 (28%), Positives = 72/170 (42%), Gaps = 45/170 (26%)
Query: 234 LRPWLWHPLVFKWTKYGRRY-NQCLSV----LHGFTNKVIKERKQLLEEKKNIGGDKPDT 288
LRP+L R Y C V L F + + ERK+L+ K G DK
Sbjct: 229 LRPFL------------RGYLKICQDVKERRLALFKDYFVDERKKLMSAK---GMDK--- 270
Query: 289 TEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREE-----VDTFMFEGHDTTTAGICW 343
+ + A +D +LEA + EI E+ V+ +TT I W
Sbjct: 271 -------EGLKCA-IDHILEAQKKG-------EINEDNVLYIVENINVAAIETTLWSIEW 315
Query: 344 SLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
+ L +HP Q K+ ELDT+ P ++T D + + YL+ V+KE L
Sbjct: 316 GIAELVNHPEIQKKLRDELDTVLG--PGNQVTEPDTHKLPYLQAVVKETL 363
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 49.9 bits (119), Expect = 1e-06
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 276 EEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHD 335
E K ++G ++ LD+ L E LTD EI F+ G D
Sbjct: 263 EYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLP--EDGDRALTDDEIVNLCSEFLNAGTD 320
Query: 336 TTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
TT+ + W + L +P Q K+ E+ D +++ D++ M YL+ V+ E L
Sbjct: 321 TTSTALQWIMAELVKNPSIQSKLHDEIKAK-TGDDQEEVSEEDVHKMPYLKAVVLEGL 377
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 49.7 bits (119), Expect = 2e-06
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 297 KKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQD 356
++R +LD LL + H LTD ++ V + E DTT W+++ L +P Q+
Sbjct: 242 EERDCYLDFLLSEATH----LTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQE 297
Query: 357 KVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL-----IPTIRTKYA 402
++ E+ + D ++T DL ++ YL V E L +P + ++
Sbjct: 298 RLYREIREVCG---DERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFV 345
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 48.7 bits (116), Expect = 3e-06
Identities = 68/271 (25%), Positives = 107/271 (39%), Gaps = 62/271 (22%)
Query: 154 GAKWHSHRKMIT-PTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIEIN--- 209
G +W + RK+ F K LD F V E+ +LV +L + G A +G +N
Sbjct: 124 GPRWRALRKICAVHLFSAKALDDFRHVREEEVALLVRELA-RQHGTA-PVNLGQLVNVCT 181
Query: 210 ---------------AQRDSKSDYVRA-VYEISELT-------IVRSLRPWL-WHPLVFK 245
D K+ + V E+ +L V +LR WL +V K
Sbjct: 182 TNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQLAGVFNVGDFVPALR-WLDLQGVVGK 240
Query: 246 WTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDL 305
+ RR++ N +I+E K + + E +DL L
Sbjct: 241 MKRLHRRFDA-------MMNGIIEEHKA---------AGQTGSEEHKDL--------LST 276
Query: 306 LL-----EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
LL + ++ +TD EI+ + G DTT++ + W++ L HP K
Sbjct: 277 LLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQE 336
Query: 361 ELDTIFAEDPDRKITMRDLNDMKYLERVIKE 391
ELD + DR ++ DL + YL+ VIKE
Sbjct: 337 ELDAVVGR--DRLVSESDLPQLTYLQAVIKE 365
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 43.6 bits (103), Expect = 1e-04
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 33/162 (20%)
Query: 241 PLVFKWTKY-GRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKR 299
PL +++ ++ + + + K IKE+ E K I + P DL
Sbjct: 226 PLYYQYLEHTDKNFKKIK--------KFIKEK--YHEHLKTIDPEVP-----RDL----- 265
Query: 300 MAFLDLLLEASEHASTPLTDV-EIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKV 358
LDLL+ E+ + D+ I + F G DT+ + W + +L ++P Q+K
Sbjct: 266 ---LDLLI--KEYGTNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKA 320
Query: 359 CAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDLIPTIRTK 400
E+ + K+ + D Y +IKE T+R K
Sbjct: 321 YNEIKSTVNGRN--KVLLSDRQSTPYTVAIIKE----TLRYK 356
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 42.5 bits (100), Expect = 3e-04
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 265 NKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIRE 324
+++ +QL++E++ G T + LG L E LTD EI +
Sbjct: 223 KNIVRMLRQLIQERRASG-----ETHTDMLGY----------LMRKEGNRYKLTDEEIID 267
Query: 325 EVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE-LDTIFAEDPDRKITMRDLNDMK 383
++ T ++ G++T + ++ L HP ++ E L + P+ I D M+
Sbjct: 268 QIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMR 327
Query: 384 YLERVIKE 391
+ VI E
Sbjct: 328 FTRAVIFE 335
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 41.2 bits (96), Expect = 8e-04
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 287 DTTEDEDLGKKKRMAFLDLLLE--ASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWS 344
D T D + K++ +F+DLL++ + S T ++ + + G DT A + W+
Sbjct: 252 DETLDPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWA 311
Query: 345 LFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
+ L +P K E+ + + ++ D+ ++ YL+ VIKE L
Sbjct: 312 MTYLIKYPEAMKKAQDEVRNVIGDKG--YVSEEDIPNLPYLKAVIKESL 358
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 41.1 bits (96), Expect = 0.001
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 316 PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKIT 375
P D IR+ + + + G DTT++ + W +LL HP K+ E++T F D +
Sbjct: 296 PKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKF--DNE---- 349
Query: 376 MRDLNDMKYLERVIKEDL 393
DL + YL + E +
Sbjct: 350 --DLEKLVYLHAALSESM 365
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 39.1 bits (91), Expect = 0.004
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 265 NKVIKERKQL-------LEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
+K +K RK+L L +++ G D L + E L
Sbjct: 219 HKSMKARKELAQILAKILSKRRQNGSSHND--------------LLGSFMGDKEG----L 260
Query: 318 TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRK-ITM 376
TD +I + + +F DTT + + W L L +P + V E I + + + +T
Sbjct: 261 TDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTW 320
Query: 377 RDLNDMKYLERVIKEDLIPTIRTKYALNWT 406
D M RVI+E T+R L++T
Sbjct: 321 EDTKKMPLTSRVIQE----TLRVASILSFT 346
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 38.7 bits (90), Expect = 0.005
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 27/210 (12%)
Query: 199 AFDTAMGIEINAQRDSKS-----DYVRAVYEISELT---IVRSLRPWLWHPLVFKWTK-- 248
F I A S S ++++ + E S+L V PWL W
Sbjct: 177 IFTLTRNITYRAAFGSSSNEGQDEFIKILQEFSKLFGAFNVADFIPWL------GWIDPQ 230
Query: 249 -YGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFL--DL 305
+R + L GF + +I + ++++KN D + D+ +AF +
Sbjct: 231 GLNKRLVKARKSLDGFIDDIIDDH---IQKRKNQNADNDSEEAETDM-VDDLLAFYSEEA 286
Query: 306 LLEASE--HASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELD 363
+ S+ S LT I+ + MF G +T + I W++ L P +V EL
Sbjct: 287 KVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELA 346
Query: 364 TIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
+ +R++ DL + YL+ +KE L
Sbjct: 347 DVVGL--NRRVEESDLEKLTYLKCTLKETL 374
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 36.6 bits (84), Expect = 0.021
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Query: 272 KQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHA--STPLTDVEIREEVDTF 329
K+ E + + + T D K + + +DLL+E + ++ T ++ +
Sbjct: 238 KECFERQDTYIQEVVNETLDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDI 297
Query: 330 MFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVI 389
+ G DT A + W + L +P K AE+ E +T D+ ++ Y ++
Sbjct: 298 VVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALV 357
Query: 390 KEDL 393
KE L
Sbjct: 358 KETL 361
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 35.8 bits (82), Expect = 0.043
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 258 SVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
+++ + + +I ER ++ E K T+ ED FLD+ + + A PL
Sbjct: 279 AIMDKYHDPIIDERIKMWREGKR--------TQIED--------FLDIFISIKDEAGQPL 322
Query: 318 -TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITM 376
T EI+ + + D + + W++ + + P K E+D + + +R +
Sbjct: 323 LTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVGK--ERFVQE 380
Query: 377 RDLNDMKYLERVIKE 391
D+ + Y++ +I+E
Sbjct: 381 SDIPKLNYVKAIIRE 395
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 35.2 bits (81), Expect = 0.066
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 289 TEDEDLGKKKRMAFLDLLLEASEHAS-TPLTDVEIREEVDTFMFEGHDTTTAGICWSLFL 347
+ E G FLD+++ E+++ LT I+ + G DT+++ I WSL
Sbjct: 259 SAHERKGNPD---FLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAE 315
Query: 348 LGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
+ +P + E+D + +R++ DL + YL+ + KE
Sbjct: 316 MLKNPSILKRAHEEMDQVIGR--NRRLVESDLPKLPYLQAICKESF 359
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 34.7 bits (80), Expect = 0.093
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRD 378
D +R+ V +F+ G DT + + +LL HP + E D + + + +
Sbjct: 291 DKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREEADRVMGPN-QEAASFEE 349
Query: 379 LNDMKYLERVIKEDL 393
+ +M YL + E +
Sbjct: 350 MKEMHYLHAALYESM 364
>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
Staphylococcus aureus plasmid proteins with no
characterized function.
Length = 229
Score = 33.8 bits (77), Expect = 0.11
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 23/99 (23%)
Query: 268 IKERKQLLE-EKKNIGGDKPDTTED-EDLGKKKRMAFLDLLLEASEHASTPLTDVE---- 321
IKE + + E E K I + + TED +D GKK F+DLL E +H + E
Sbjct: 61 IKENQDIREKELKAIKSELKEATEDFQDKGKKIHNDFVDLLQEKLKHVDAEDIEDELGKD 120
Query: 322 ---IREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDK 357
+REE+D + E + SH HYQ +
Sbjct: 121 IYGVREEIDRMLQE--------------VKQSHEHYQKR 145
>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional.
Length = 1060
Score = 34.5 bits (79), Expect = 0.13
Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 263 FTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEI 322
K+ + QL+ + +I T + L + LL EA+ + +
Sbjct: 230 DQTKLELDLSQLVVGRHSIAESLFTQTVLDSLDYDSYE-YNGLLQEAAISSGKGIFAESK 288
Query: 323 REEVDTFMFEGHDTTTAG 340
REE+ TF E +
Sbjct: 289 REELYTFYEEKQSRAKSS 306
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 33.3 bits (76), Expect = 0.26
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 24/156 (15%)
Query: 241 PLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRM 300
PL F T Y R+ + + + F + ++ER + L+E+ D + +ED
Sbjct: 220 PLNFPGTAY-RKALKSRATILKFIERKMEERIEKLKEE--------DESVEED------- 263
Query: 301 AFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
DLL +H++ L+ +I + + + +F GH+T++ I ++F L P ++
Sbjct: 264 ---DLLGWVLKHSN--LSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELRE 318
Query: 361 ELDTIFAEDPDR---KITMRDLNDMKYLERVIKEDL 393
E I ++ D M++ + VI E L
Sbjct: 319 EHLEIARAKKQSGESELNWEDYKKMEFTQCVINETL 354
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 30.7 bits (69), Expect = 1.5
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 18/142 (12%)
Query: 251 RRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEAS 310
R ++++ + N +I ER +L EK GK +LD +
Sbjct: 258 ERAKVNVNLVRSYNNPIIDERVELWREKG---------------GKAAVEDWLDTFITLK 302
Query: 311 EHASTPL-TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAED 369
+ L T EI+ + F D + W+L + +P K ELD + +
Sbjct: 303 DQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGK- 361
Query: 370 PDRKITMRDLNDMKYLERVIKE 391
DR + D+ ++ YL+ +E
Sbjct: 362 -DRLVQESDIPNLNYLKACCRE 382
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 30.6 bits (69), Expect = 2.0
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 351 HPH-YQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDLIPTIRTKYALNWT-RS 408
HP + V A D + E P +T++ D K E + ED++ R + W +S
Sbjct: 475 HPAVLEASVVARPDERWGESPCAFVTLKPGVD-KSDEAALAEDIMKFCRERLPAYWVPKS 533
Query: 409 -----LPKTQTGK 416
LPKT TGK
Sbjct: 534 VVFGPLPKTATGK 546
>gnl|CDD|236962 PRK11718, PRK11718, anti-RNA polymerase sigma 70 factor;
Provisional.
Length = 161
Score = 29.1 bits (66), Expect = 2.5
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 265 NKVI----KERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLL 307
NK+I ER+QLL + G KP +K F LL+
Sbjct: 16 NKLIDRWLHERQQLLVAYCKLAGIKPGKESLSLPNEKALDDFCQLLV 62
Score = 28.7 bits (65), Expect = 3.2
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 24/68 (35%)
Query: 64 NKVI----KERKQLLEEKKNIGGDKPDTTEDEDLVENSPFSVITPTFHFKILDVFVDVFV 119
NK+I ER+QLL + G KP E + LD F
Sbjct: 16 NKLIDRWLHERQQLLVAYCKLAGIKPGKESLSLPNEKA-------------LDDF----- 57
Query: 120 EKCQILVD 127
CQ+LVD
Sbjct: 58 --CQLLVD 63
>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent
benzaldehyde dehydrogenase II, vanillin dehydrogenase,
p-hydroxybenzaldehyde dehydrogenase and related
proteins. ALDH subfamily which includes the
NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC,
BenzADH, EC=1.2.1.28) involved in the oxidation of
benzyl alcohol to benzoate; p-hydroxybenzaldehyde
dehydrogenase (PchA, HBenzADH) which catalyzes the
oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic
acid; vanillin dehydrogenase (Vdh, VaniDH) involved in
the metabolism of ferulic acid as seen in Pseudomonas
putida KT2440; and other related sequences.
Length = 431
Score = 29.0 bits (66), Expect = 4.8
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 169 HFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIEINA-QRDSKSDYVRA 221
H + D FV+ V K + L +GD D DT +G IN Q D V
Sbjct: 251 HESVYDEFVEKLVAKAKAL--PVGDPRDP---DTVIGPLINERQVDRVHAIVED 299
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,963,321
Number of extensions: 2168244
Number of successful extensions: 1836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1813
Number of HSP's successfully gapped: 42
Length of query: 421
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 322
Effective length of database: 6,546,556
Effective search space: 2107991032
Effective search space used: 2107991032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)