RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16903
(421 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 281 bits (720), Expect = 9e-91
Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 41/256 (16%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKA-FD----------- 201
+WH R++I F L ++ F EK + LV+ L K DG+
Sbjct: 83 YERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMD 142
Query: 202 ----TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCL 257
A G+E + ++ +AV + E + + K R + +
Sbjct: 143 ILAKAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTLAKF---LPGKRKQLREVRESI 199
Query: 258 SVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
L ++ R++ L+ G++ L +L+A E
Sbjct: 200 RFLRQVGRDWVQRRREALKR-----------------GEEVPADILTQILKAEE---GAQ 239
Query: 318 TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMR 377
D + + TF GH+T+ + +++ L P ++ AE+D + R +
Sbjct: 240 DDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGS--KRYLDFE 297
Query: 378 DLNDMKYLERVIKEDL 393
DL ++YL +V+KE L
Sbjct: 298 DLGRLQYLSQVLKESL 313
Score = 86.5 bits (215), Expect = 1e-18
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
A G+E + ++ +AV + E + + K R + + L
Sbjct: 148 AFGMETSMLLGAQKPLSQAVKLMLEGITASRNTLAKF---LPGKRKQLREVRESIRFLRQ 204
Query: 62 FTNKVIKERKQLLEEKKNIGGD--------KPDTTEDEDLVE 95
++ R++ L+ + + D + +DE L++
Sbjct: 205 VGRDWVQRRREALKRGEEVPADILTQILKAEEGAQDDEGLLD 246
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 267 bits (685), Expect = 4e-85
Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 45/256 (17%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFD----------- 201
W + R L V V E + +D+L + + D
Sbjct: 138 PELWKTTRPFFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLD 197
Query: 202 ----TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCL 257
+ I ++ V + + ++P ++ FK + ++Y + +
Sbjct: 198 TSNTLFLRIPLDES-----AIVVKIQGYFDAWQALLIKPDIF----FKISWLYKKYEKSV 248
Query: 258 SVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
L +I E+++ + ++ ++ M F L+ A + L
Sbjct: 249 KDLKDAIEVLIAEKRRRISTEE---------------KLEECMDFATELILAEKRG--DL 291
Query: 318 TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMR 377
T + + + + DT + + + LFL+ HP+ ++ + E+ T+ +R I +
Sbjct: 292 TRENVNQCILEMLIAAPDTMSVSLFFMLFLIAKHPNVEEAIIKEIQTVI---GERDIKID 348
Query: 378 DLNDMKYLERVIKEDL 393
D+ +K +E I E +
Sbjct: 349 DIQKLKVMENFIYESM 364
Score = 70.5 bits (173), Expect = 3e-13
Identities = 9/78 (11%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
+ I ++ V + + ++P ++ FK + ++Y + + L
Sbjct: 203 FLRIPLDES-----AIVVKIQGYFDAWQALLIKPDIF----FKISWLYKKYEKSVKDLKD 253
Query: 62 FTNKVIKERKQLLEEKKN 79
+I E+++ + ++
Sbjct: 254 AIEVLIAEKRRRISTEEK 271
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 231 bits (591), Expect = 2e-71
Identities = 49/293 (16%), Positives = 104/293 (35%), Gaps = 52/293 (17%)
Query: 123 QILVDKLGDKCDGKAFDVYPFITRCA-----MDIICGAKWHSHRKMITPTFHFKILDVFV 177
+ + DK +A F+ A W ++ P+F + + +
Sbjct: 60 EACDESRFDKNLSQA---LKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFSQQAMKGYH 116
Query: 178 DVFVEKCQILVDKLGDKCDGKAFD---------------TAMGIEINAQ-RDSKSDYVRA 221
+ V+ LV K + + N+ RD ++ +
Sbjct: 117 AMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITS 176
Query: 222 VYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNI 281
+ + + + R P + + R++ + + V++ +K+I +RK E+ +
Sbjct: 177 MVRALDEAMNKLQRAN---PDDPAYDENKRQFQEDIKVMNDLVDKIIADRKASGEQSDD- 232
Query: 282 GGDKPDTTEDEDLGKKKRMAFLDLLLEASEHAS-TPLTDVEIREEVDTFMFEGHDTTTAG 340
L +L + + PL D IR ++ TF+ GH+TT+
Sbjct: 233 --------------------LLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGL 272
Query: 341 ICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
+ ++L+ L +PH K E + D + + + +KY+ V+ E L
Sbjct: 273 LSFALYFLVKNPHVLQKAAEEAARVLV---DPVPSYKQVKQLKYVGMVLNEAL 322
Score = 69.2 bits (170), Expect = 5e-13
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 2 AMGIEINAQ-RDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLH 60
N+ RD ++ ++ + + + R P + + R++ + + V++
Sbjct: 157 GFNYRFNSFYRDQPHPFITSMVRALDEAMNKLQRAN---PDDPAYDENKRQFQEDIKVMN 213
Query: 61 GFTNKVIKERKQLLEEKKN-----IGGDKPDTTE---DEDLVENSPFSVIT 103
+K+I +RK E+ + + G P+T E DE++ +IT
Sbjct: 214 DLVDKIIADRKASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQ----IIT 260
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 221 bits (564), Expect = 2e-67
Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 46/255 (18%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFD------------ 201
G R+ I P F + + + E+ L ++ GK D
Sbjct: 109 GPLHRRQRRTIQPAFRLDAIPAYGPIMEEEAHALTERWQP---GKTVDATSESFRVAVRV 165
Query: 202 ---TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLS 258
+ + +R A+ + R + P L RR+N L+
Sbjct: 166 AARCLLRGQYMDERAE--RLCVALATVFRGMYRRMVVPLGP--LYRLPLPANRRFNDALA 221
Query: 259 VLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
LH +++I ER+ ++ D L LLEA + P+
Sbjct: 222 DLHLLVDEIIAERRASGQK----PDD-----------------LLTALLEAKDDNGDPIG 260
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRD 378
+ EI ++V + G +T + I W L L HP + D++ E++ + R + D
Sbjct: 261 EQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHADRIRDEVEAVTG---GRPVAFED 317
Query: 379 LNDMKYLERVIKEDL 393
+ +++ VI E +
Sbjct: 318 VRKLRHTGNVIVEAM 332
Score = 57.3 bits (139), Expect = 4e-09
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
+ + +R A+ + R + P L RR+N L+ LH
Sbjct: 170 LLRGQYMDERAE--RLCVALATVFRGMYRRMVVPLGP--LYRLPLPANRRFNDALADLHL 225
Query: 62 FTNKVIKERKQLLEE 76
+++I ER+ ++
Sbjct: 226 LVDEIIAERRASGQK 240
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 207 bits (530), Expect = 9e-63
Identities = 36/257 (14%), Positives = 82/257 (31%), Gaps = 43/257 (16%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFD------------ 201
+ + FV + + + DK D +
Sbjct: 93 YPRMREQLNFLAEELTIAKFQNFVPAIQHEVRKFMAANWDK-DEGEINLLEDCSTMIINT 151
Query: 202 ---TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLS 258
G ++ + D+ + + + ++ I ++ + L R ++ +
Sbjct: 152 ACQCLFGEDLRKRLDA-RRFAQLLAKMESSLIPAAVFLPILLKL---PLPQSARCHEART 207
Query: 259 VLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
L +++I RK+ K + D L LL A TP++
Sbjct: 208 ELQKILSEIIIARKEEEVNKDSSTSD-----------------LLSGLLSAVYRDGTPMS 250
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPH--YQDKVCAELDTIFAEDPDRKITM 376
E+ + MF G T++ WS+ L + + + + E++ A+
Sbjct: 251 LHEVCGMIVAAMFAGQHTSSITTTWSMLHLMHPANVKHLEALRKEIEEFPAQLN----YN 306
Query: 377 RDLNDMKYLERVIKEDL 393
+++M + ER +E +
Sbjct: 307 NVMDEMPFAERCARESI 323
Score = 61.9 bits (151), Expect = 1e-10
Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
G ++ + D+ + + + ++ I ++ + L R ++ + L
Sbjct: 156 LFGEDLRKRLDA-RRFAQLLAKMESSLIPAAVFLPILLKL---PLPQSARCHEARTELQK 211
Query: 62 FTNKVIKERKQLLEEKKNIGGD 83
+++I RK+ K + D
Sbjct: 212 ILSEIIIARKEEEVNKDSSTSD 233
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 200 bits (511), Expect = 9e-60
Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 47/255 (18%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFD------------ 201
+ +KM+ + V + ++ + + G+ +
Sbjct: 101 NPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGE---SGEKNVFEALSELIILT 157
Query: 202 ---TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLS 258
G EI +Q + + V +Y + W + RR ++
Sbjct: 158 ASHCLHGKEIRSQLN---EKVAQLYAD----LDGGFSHAAWLLPGWLPLPSFRRRDRAHR 210
Query: 259 VLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
+ K I++R+Q ++K L LL+A+ PLT
Sbjct: 211 EIKDIFYKAIQKRRQ---------------------SQEKIDDILQTLLDATYKDGRPLT 249
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRD 378
D E+ + + G T++ W F L Q K E T+ E+ +T
Sbjct: 250 DDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGEN-LPPLTYDQ 308
Query: 379 LNDMKYLERVIKEDL 393
L D+ L+R IKE L
Sbjct: 309 LKDLNLLDRCIKETL 323
Score = 44.6 bits (106), Expect = 4e-05
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
G EI +Q + + V +Y + W + RR ++ +
Sbjct: 162 LHGKEIRSQLN---EKVAQLYAD----LDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKD 214
Query: 62 FTNKVIKERKQ 72
K I++R+Q
Sbjct: 215 IFYKAIQKRRQ 225
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 184 bits (470), Expect = 7e-54
Identities = 46/287 (16%), Positives = 88/287 (30%), Gaps = 52/287 (18%)
Query: 123 QILVDKLGDKCDGKAFDVYPFITRCAMD--IICGAKWHSHRKMITPTFHFKILDVFVDVF 180
D YPF+T + + + + + +
Sbjct: 61 FFFRAGDDDLDQA---KAYPFMTPIFGEGVVFDASPERRKEMLHNAALRGEQMKGHAATI 117
Query: 181 VEKCQILVDKLGDKCDGKAFD---------------TAMGIEINAQRDSKSDYVRAVYEI 225
++ + ++ G+ D +G + Q D + +Y
Sbjct: 118 EDQVRRMIADWGE---AGEIDLLDFFAELTIYTSSACLIGKKFRDQLDGR---FAKLYH- 170
Query: 226 SELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDK 285
+ R P + + RR ++ + L ++ R +
Sbjct: 171 ---ELERGTDPLAYVDPYLPIESF-RRRDEARNGLVALVADIMNGRIA----------NP 216
Query: 286 PDTTEDEDLGKKKRMAFLDLLLEAS-EHASTPLTDVEIREEVDTFMFEGHDTTTAGICWS 344
P D D+ LD+L+ E + + EI + MF GH T++ W+
Sbjct: 217 PTDKSDRDM--------LDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWT 268
Query: 345 LFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE 391
L L H V ELD ++ + R ++ L + LE V+KE
Sbjct: 269 LIELMRHRDAYAAVIDELDELYGD--GRSVSFHALRQIPQLENVLKE 313
Score = 41.1 bits (97), Expect = 5e-04
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHG 61
+G + Q D + +Y + R P + + RR ++ + L
Sbjct: 152 LIGKKFRDQLDGR---FAKLYH----ELERGTDPLAYVDPYLPIESF-RRRDEARNGLVA 203
Query: 62 FTNKVIKERKQ 72
++ R
Sbjct: 204 LVADIMNGRIA 214
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 165 bits (421), Expect = 1e-46
Identities = 34/260 (13%), Positives = 76/260 (29%), Gaps = 50/260 (19%)
Query: 154 GAKWHSHRKMITPTFH-FKILDVFVDVFVEKCQILVDKLGDKCDGK-------------- 198
G +W R + E ++++ + CD +
Sbjct: 120 GQEWQRVRSAFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWS 179
Query: 199 -------AFDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGR 251
++ G+ + ++ A+ + + P H + TK +
Sbjct: 180 FESICLVLYEKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLN--TKVWQ 237
Query: 252 RYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASE 311
+ + I R + ++ FL + +
Sbjct: 238 AHTLAWDTIFKSVKPCIDNRL-------------------QRYSQQPGADFLCDIYQQDH 278
Query: 312 HASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPD 371
L+ E+ V +TT + W L+ L +P Q ++ E+ ++ +
Sbjct: 279 -----LSKKELYAAVTELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLP--DN 331
Query: 372 RKITMRDLNDMKYLERVIKE 391
+ DL +M YL+ +KE
Sbjct: 332 QTPRAEDLRNMPYLKACLKE 351
Score = 52.3 bits (126), Expect = 2e-07
Identities = 9/79 (11%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 3 MGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGF 62
G+ + ++ A+ + + P H + TK + + +
Sbjct: 192 FGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLN--TKVWQAHTLAWDTIFKS 249
Query: 63 TNKVIKERKQLLEEKKNIG 81
I R Q ++
Sbjct: 250 VKPCIDNRLQRYSQQPGAD 268
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 154 bits (390), Expect = 3e-42
Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 48/263 (18%)
Query: 154 GAKWHSHRKMITPT-FHFKILDVFVDVFVEKCQILVDKLGDKCD-----GKAFD------ 201
A W R + + F+ + + V L + + D
Sbjct: 104 SAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLF 163
Query: 202 ---------TAMGIEINAQRDSKSD----YVRAVYEISELTIVRSLRPWLWHPLVFKWTK 248
G + + ++ A+Y++ ++ P L TK
Sbjct: 164 RFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFR--TK 221
Query: 249 YGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLE 308
+ + V+ + + L +K ++ D + +L
Sbjct: 222 TWKDHVAAWDVIFSKADIYTQNFYWELRQKGSVHHD-----------------YRGILYR 264
Query: 309 ASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAE 368
+ ++ +I+ V + G DTT+ + W L+ + + QD + AE+ +
Sbjct: 265 LLGDSK--MSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQDMLRAEVLAARHQ 322
Query: 369 DPDRKITMRDLNDMKYLERVIKE 391
+ L + L+ IKE
Sbjct: 323 --AQGDMATMLQLVPLLKASIKE 343
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 148 bits (377), Expect = 1e-40
Identities = 47/253 (18%), Positives = 96/253 (37%), Gaps = 55/253 (21%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFD------------ 201
G S RK++ F + LD ++ Q +++ G
Sbjct: 98 GEIHRSRRKILYQAFLPRTLDSYLPKMDGIVQGYLEQWGK---ANEVIWYPQLRRMTFDV 154
Query: 202 ---TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLS 258
MG +++ + + + + P T + + + +
Sbjct: 155 AATLFMGEKVSQNPQLFPWFETYIQGL--------FSLPIPLP----NTLF-GKSQRARA 201
Query: 259 VLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
+L K+IK R+Q +P + ED L +LL A + + PL+
Sbjct: 202 LLLAELEKIIKARQQ-----------QPPSEED----------ALGILLAARDDNNQPLS 240
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRD 378
E+++++ +F GH+T T+ + LLG H +++V E + + +++T
Sbjct: 241 LPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQEQNKL---QLSQELTAET 297
Query: 379 LNDMKYLERVIKE 391
L M YL++V++E
Sbjct: 298 LKKMPYLDQVLQE 310
Score = 30.7 bits (70), Expect = 0.90
Identities = 10/80 (12%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 1 MAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLH 60
+ MG +++ + + + + P T + + + ++L
Sbjct: 158 LFMGEKVSQNPQLFPWFETYIQGL--------FSLPIPLP----NTLF-GKSQRARALLL 204
Query: 61 GFTNKVIKERKQLLEEKKNI 80
K+IK R+Q +++
Sbjct: 205 AELEKIIKARQQQPPSEEDA 224
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 127 bits (322), Expect = 3e-33
Identities = 31/229 (13%), Positives = 58/229 (25%), Gaps = 71/229 (31%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFD------------ 201
G W RK + F K + + + E+ + + G+ D
Sbjct: 84 GESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEW----RGEERDLDHEMLALSLRL 139
Query: 202 ---TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLS 258
G ++ + + + ++ P R+
Sbjct: 140 LGRALFGKPLSPSLA------EHALKALDRIMAQTRSPLALLD-----LAAEARFR---- 184
Query: 259 VLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLT 318
K+R L E L++ + L
Sbjct: 185 ----------KDRGALYRE------------------------AEALIVHPPL---SHLP 207
Query: 319 DVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFA 367
E T + GH+T + + WS LL P +Q +V + A
Sbjct: 208 RERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALA 256
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 126 bits (317), Expect = 6e-32
Identities = 33/266 (12%), Positives = 65/266 (24%), Gaps = 56/266 (21%)
Query: 157 WHSHRKMITPTFHFKILDVFVDVFVEKCQ-ILVDKLGDKCDGK----------------A 199
+ + T + L + +L+ + G
Sbjct: 107 PSDEKARMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAG 166
Query: 200 FDTAMGIEINAQRDSKSDYVRAVYE--ISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCL 257
+ T GIE + R + L P L + K
Sbjct: 167 YLTLYGIEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVGDK--DHMCSVK 224
Query: 258 SVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
S L + R+ R +L+ L E +
Sbjct: 225 SRLWKLLSPARLARR------------------------AHRSKWLESYLLHLEE--MGV 258
Query: 318 TDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAED-----PDR 372
++ + ++ W L L +P V EL++I +
Sbjct: 259 SEEMQARALVLQLWATQGNMGPAAFWLLLFLLKNPEALAAVRGELESILWQAEQPVSQTT 318
Query: 373 KITMRDLNDMKYLERVIKEDLIPTIR 398
+ + L+ L+ V+ E ++R
Sbjct: 319 TLPQKVLDSTPVLDSVLSE----SLR 340
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 122 bits (308), Expect = 9e-31
Identities = 44/332 (13%), Positives = 93/332 (28%), Gaps = 69/332 (20%)
Query: 104 PTFHFKILDVFVDVFV---EKC-QILV-DKLGDKCDGKAFDVYPFITRCAMDIICGAKWH 158
F K++ +V F+ ++L K D ++D + G
Sbjct: 48 HVFTCKLMGKYV-HFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTE 106
Query: 159 SHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGK-------------------A 199
+ T L+ + +E Q ++
Sbjct: 107 NINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAG 166
Query: 200 FDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSV 259
+ T G ++ + K+ + + + + P L L +
Sbjct: 167 YLTIFGRDLTRRDTQKAHILNNLDNFKQFD---KVFPALVAGLP--IHMFRTA------- 214
Query: 260 LHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTD 319
R++L E ++ K ++ + + L + ++ S D
Sbjct: 215 --------HNAREKLAESLRHENLQKRESISE----------LISLRMFLNDTLS-TFDD 255
Query: 320 VEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAED--------PD 371
+E + ++ T WSLF + +P E+
Sbjct: 256 LEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNP 315
Query: 372 RKITMRDLNDMKYLERVIKEDL-----IPTIR 398
++ +LND+ L+ +IKE L IR
Sbjct: 316 ICLSQAELNDLPVLDSIIKESLRLSSASLNIR 347
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 105 bits (264), Expect = 5e-25
Identities = 25/245 (10%), Positives = 65/245 (26%), Gaps = 44/245 (17%)
Query: 157 WHSHRKMITPTFHF---KILDVFVDVFVEKCQILVDKLGDKCDGKAFD----TAMGIEIN 209
+ + P F ++ + + + + +G++ AF
Sbjct: 130 LKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQA---AFRFLGRAYFNSNPE 186
Query: 210 AQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIK 269
+ + + ++ +L P L L + + +LH F
Sbjct: 187 ETK-----LGTSAPTLISSWVLFNLAPTLDLGLPWFLQEP---------LLHTFRLPAFL 232
Query: 270 ERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTF 329
+ L + ++ +A + D + +
Sbjct: 233 IKS-----------------TYNKLYDYFQSVATPVMEQAEKL--GVPKDEAVHNILFAV 273
Query: 330 MFEGHDTTTAGICWSLFLLG-SHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERV 388
F +L +G + + ++ E+ D +T+ + M + V
Sbjct: 274 CFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSV 333
Query: 389 IKEDL 393
+ E L
Sbjct: 334 VYESL 338
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 105 bits (262), Expect = 1e-24
Identities = 31/261 (11%), Positives = 66/261 (25%), Gaps = 59/261 (22%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGK------------AFD 201
H K + + F L D L + K AF+
Sbjct: 133 SEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFN 192
Query: 202 ----TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCL 257
G + + ++ +L P L L +
Sbjct: 193 FLARAFYGTNPADTK-----LKADAPGLITKWVLFNLHPLLSIGLPRVIEEP-------- 239
Query: 258 SVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPL 317
++H F+ + ++ FL+ E A
Sbjct: 240 -LIHTFSLPPALVKSDY---------------------QRLYEFFLESAGEILVEADK-- 275
Query: 318 TDVEIREEVDTFMFEGHDTTTAGICWSLFLL-----GSHPHYQDKVCAELDTIFAEDPDR 372
+ E +F T G+ + + +++ E+ ++ +
Sbjct: 276 LGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIRSVIKSN-GG 334
Query: 373 KITMRDLNDMKYLERVIKEDL 393
++TM + M+ + V+ E L
Sbjct: 335 ELTMGAIEKMELTKSVVYECL 355
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 96.1 bits (240), Expect = 9e-22
Identities = 48/281 (17%), Positives = 103/281 (36%), Gaps = 69/281 (24%)
Query: 154 GAKWHSHRKMITPTF-------HFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFD---- 201
+W R +++PTF I+ + +LV L + + GK
Sbjct: 101 DEEWKRLRSLLSPTFTSGKLKEMVPII-------AQYGDVLVRNLRREAETGKPVTLKDV 153
Query: 202 -----------TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLR------PWLWHPLVF 244
T+ G+ I++ + + +V ++ + P+L +
Sbjct: 154 FGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFL--IPIL 211
Query: 245 KWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLD 304
+ + + L ++ + R E + D FL
Sbjct: 212 EVLNICVFPREVTNFLRKSVKRMKESR----LEDTQKH--RVD--------------FLQ 251
Query: 305 LLLEASEHAST----PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
L++++ T L+D+E+ + F+F G++TT++ + + ++ L +HP Q K+
Sbjct: 252 LMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQE 311
Query: 361 ELDTIFAEDPDRKITMRDLNDMKYLERVIKEDLIPTIRTKY 401
E+D + T + M+YL+ V+ E T+R +
Sbjct: 312 EIDAVLPN--KAPPTYDTVLQMEYLDMVVNE----TLR-LF 345
Score = 30.6 bits (70), Expect = 0.98
Identities = 11/114 (9%), Positives = 37/114 (32%), Gaps = 20/114 (17%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLR------PWLWHPLVFKWTKYGRRYNQC 55
+ G+ I++ + + +V ++ + P+L + + +
Sbjct: 166 SFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFL--IPILEVLNICVFPREV 223
Query: 56 LSVLHGFTNKVIKERKQ------------LLEEKKNIGGDKPDTTEDEDLVENS 97
+ L ++ + R + +++ + + + D +LV S
Sbjct: 224 TNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQS 277
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 91.6 bits (228), Expect = 3e-20
Identities = 31/273 (11%), Positives = 62/273 (22%), Gaps = 54/273 (19%)
Query: 140 VYPFITRCAMDIICGAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKA 199
+ R I+ S +K F L + ++L+
Sbjct: 89 AQVLMKRIFNMILPSHNPESEKKRAEMHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSE 148
Query: 200 --------------FDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFK 245
F T A+ ++ + + E L P L
Sbjct: 149 WKKDGLFNLCYSLLFKTGYLTVFGAENNNSAALTQIYEEFRRFD---KLLPKLA------ 199
Query: 246 WTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDL 305
T + Q S K + K + ++L
Sbjct: 200 RTTVNKEEKQIASAAREKLWKWLTPSGLD--------------------RKPREQSWLGS 239
Query: 306 LLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTI 365
++ + + R + ++ W + L +HP V E+
Sbjct: 240 YVKQLQDEG--IDAEMQRRAMLLQLWVTQGNAGPAAFWVMGYLLTHPEALRAVREEIQ-- 295
Query: 366 FAEDPDRKITMRDLNDMKYLERVIKEDLIPTIR 398
+ + V+ E T+R
Sbjct: 296 ---GGKHLRLEERQKNTPVFDSVLWE----TLR 321
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 87.4 bits (217), Expect = 6e-19
Identities = 19/246 (7%), Positives = 61/246 (24%), Gaps = 56/246 (22%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGI--EINAQ 211
G+ + + ++ E+ + V + + F+ A I +
Sbjct: 89 GSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACY 148
Query: 212 ----RDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKV 267
+++ + ++ V + + + + +
Sbjct: 149 WAGVPLKETEVKERADDFIDM--VDAFGAVGPRH---------WKGRRARPRAEEWIEVM 197
Query: 268 IKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVD 327
I++ + T L + ++ + L E+
Sbjct: 198 IEDARA-----------GLLKTTSGTA--------LHEMAFHTQEDGSQLDSRMAAIEL- 237
Query: 328 TFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLER 387
+ + + +S L HP Y++ + + + + E
Sbjct: 238 INVLRPIVAISYFLVFSALALHEHPKYKEWLRSG-------------------NSREREM 278
Query: 388 VIKEDL 393
++E
Sbjct: 279 FVQEVR 284
Score = 33.9 bits (78), Expect = 0.10
Identities = 3/52 (5%), Positives = 11/52 (21%), Gaps = 3/52 (5%)
Query: 102 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
++ E+ + V + ++ + C
Sbjct: 99 FLSLMTPPHQKRLAELMTEEWKAAVTRWEK---ADEVVLFEEAKEILCRVAC 147
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 79.4 bits (196), Expect = 3e-16
Identities = 21/250 (8%), Positives = 59/250 (23%), Gaps = 69/250 (27%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAM--------- 204
G ++M + + +F + + V K + +D
Sbjct: 88 GETHRHRKQMFMGLMTPERVRALAQLFEAEWRRAVPGWTRKGEIVFYDELHEPLTRAVCA 147
Query: 205 ---GIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLH 261
+ + +++ +RA+++ S P W++ RR +
Sbjct: 148 WAGVPLPDDEAGNRAGELRALFDA-----AGSASPRHL------WSRLARRR------VD 190
Query: 262 GFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVE 321
+ ++I+ + + + + L+
Sbjct: 191 AWAKRIIEGIRA-----------GSIGSGSGTA--------AYAIAWHRDRHDDLLSPHV 231
Query: 322 IREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLND 381
E+ + I + L + + +
Sbjct: 232 AAVEL-VNVLRPTVAIAVYITFVAHALQTCSGIRA--------------------ALVQQ 270
Query: 382 MKYLERVIKE 391
Y E ++E
Sbjct: 271 PDYAELFVQE 280
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 66.1 bits (162), Expect = 6e-12
Identities = 38/272 (13%), Positives = 77/272 (28%), Gaps = 54/272 (19%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIE------ 207
W +H+K+ + Q +++ G
Sbjct: 114 SLLWKAHKKLTRSALLLGTRSSMEPWVDQLTQEFCERM-RVQAGAPVTIQKEFSLLTCSI 172
Query: 208 INA----QRDSKSD--YVRAVYEISELTIVRSLR-----PWLWH-PLVFKWTKYGRRYNQ 255
I ++ + V ++ + S++ P+L P R Q
Sbjct: 173 ICYLTFGNKEDTLVHAFHDCVQDLMKTWDHWSIQILDMVPFLRFFP-----NPGLWRLKQ 227
Query: 256 CLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLL-----EAS 310
+ K ++ K+ + D D +L +
Sbjct: 228 AIENRDHMVEKQLRRHKESMV---------AGQWRD----------MTDYMLQGVGRQRV 268
Query: 311 EHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDT-IFAED 369
E L + + V G +TT + + W++ L HP Q ++ ELD +
Sbjct: 269 EEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGA 328
Query: 370 PDRKITMRDLNDMKYLERVIKE-----DLIPT 396
++T +D + L I E ++P
Sbjct: 329 SCSRVTYKDRARLPLLNATIAEVLRLRPVVPL 360
Score = 28.3 bits (64), Expect = 5.3
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
+ Q +++ G + + IIC
Sbjct: 142 QLTQEFCERM-RVQAGAPVTIQKEFSLLTCSIIC 174
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 65.6 bits (161), Expect = 8e-12
Identities = 57/300 (19%), Positives = 96/300 (32%), Gaps = 82/300 (27%)
Query: 143 FITRCAMDII---CGAKWHSHRKMITPTF-HF---------KILDVFVDVFVEKCQILVD 189
+ I GA W HR++ TF F I ++ L D
Sbjct: 86 IASNNRKGIAFADSGAHWQLHRRLAMATFALFKDGDQKLEKIIC--------QEISTLCD 137
Query: 190 KLGDKCDGKAFDTAMGIE------INA----QRDSKSD-----YVRAVYEISELTIVRSL 234
L +G++ D + + I+ D I + SL
Sbjct: 138 ML-ATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSL 196
Query: 235 R---PWLWH-PLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTE 290
PWL P K + + + + NK+++ K+ D+
Sbjct: 197 VDLVPWLKIFP-----NKTLEKLKSHVKIRNDLLNKILENYKEKFR---------SDSIT 242
Query: 291 DEDLGKKKRMAFLDLLLEA----------SEHASTPLTDVEIREEVDTFMFEGHDTTTAG 340
+ LD L++A + S L+D I + G +TTT+
Sbjct: 243 N----------MLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSV 292
Query: 341 ICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
+ W+L L +P + K+ E+D R T+ D N + LE I+E + P
Sbjct: 293 VKWTLAFLLHNPQVKKKLYEEIDQNV--GFSRTPTISDRNRLLLLEATIREVLRLRPVAP 350
Score = 29.8 bits (68), Expect = 2.0
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
++ L D L +G++ D+ + ++I
Sbjct: 130 QEISTLCDML-ATHNGQSIDISFPVFVAVTNVIS 162
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 64.2 bits (157), Expect = 3e-11
Identities = 47/280 (16%), Positives = 71/280 (25%), Gaps = 59/280 (21%)
Query: 154 GAKWHSHRKMITPTF-HFKILDVFVDVFVEK-----CQILVDKLGDKC-DGKAFDTAMGI 206
W R+ +F +E + LV L DG D
Sbjct: 98 SEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLT 157
Query: 207 E------INA----QRDSKSD-----YVRAVYEISELTIVRSLR---PWLWHPLVFKWTK 248
++A R S D + E SL PWL +
Sbjct: 158 VVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEFGRTVGAGSLVDVMPWLQY-FPNPVRT 216
Query: 249 YGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLL- 307
R + Q F + L D +D +
Sbjct: 217 VFREFEQLNRNFSNFILDKFLRHCESL--------RPGAAPRD----------MMDAFIL 258
Query: 308 -------EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
S L + + DT + + W L L +P Q +V A
Sbjct: 259 SAEKKAAGDSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQA 318
Query: 361 ELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
ELD + DR M D ++ Y+ + E +P
Sbjct: 319 ELDQVV--GRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVP 356
Score = 27.6 bits (62), Expect = 8.7
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 120 EKCQILVDKLGDKC-DGKAFDVYPFITRCAMDIIC 153
+ + LV L DG D P +++
Sbjct: 132 SEARELVALLVRGSADGAFLDPRPLTVVAVANVMS 166
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 64.1 bits (157), Expect = 3e-11
Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 34/169 (20%)
Query: 236 PWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLG 295
P L + L + R+ F K ++E Q + ++ D
Sbjct: 216 PILRY-LPNPALQ---RFKAFNQRFLWFLQKTVQEHYQDFD---------KNSVRD---- 258
Query: 296 KKKRMAFLDLLLEASEHA----STPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSH 351
L + S+ + +I V+ G DT T I WSL L +
Sbjct: 259 ------ITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTK 312
Query: 352 PHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
P Q K+ ELDT+ +R+ + D + YLE I E +P
Sbjct: 313 PEIQRKIQKELDTVI--GRERRPRLSDRPQLPYLEAFILETFRHSSFLP 359
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 61.0 bits (149), Expect = 2e-10
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 34/169 (20%)
Query: 236 PWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLG 295
PW+ K ++ + +V++ F +++I++ + P +
Sbjct: 207 PWIGILPFGKH----QQLFRNAAVVYDFLSRLIEKASVNRK---------PQLPQH---- 249
Query: 296 KKKRMAFLDLLL----EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSH 351
F+D L + S+ + + V + G +TTT + W++ + +
Sbjct: 250 ------FVDAYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALY 303
Query: 352 PHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
P+ Q +V E+D I P+ K + D M Y E V+ E +++P
Sbjct: 304 PNIQGQVQKEIDLIM--GPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVP 350
Score = 27.9 bits (63), Expect = 6.5
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
E+ + D + + G+ FD IT +I
Sbjct: 134 EETKFFNDAI-ETYKGRPFDFKQLITNAVSNITN 166
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 60.3 bits (147), Expect = 4e-10
Identities = 34/170 (20%), Positives = 56/170 (32%), Gaps = 36/170 (21%)
Query: 236 PWLWH-PLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDL 294
P L H P + + + ++++ E + D D
Sbjct: 206 PVLLHIPALAG------KVLRFQKAFLTQLDELLTEHRMTW--------DPAQPPRD--- 248
Query: 295 GKKKRMAFLDLLL----EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGS 350
+ L +A + + D +R V G TT+ + W L L+
Sbjct: 249 -------LTEAFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMIL 301
Query: 351 HPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
HP Q +V E+D + R+ M D M Y VI E D++P
Sbjct: 302 HPDVQRRVQQEIDDVI--GQVRRPEMGDQAHMPYTTAVIHEVQRFGDIVP 349
Score = 28.7 bits (65), Expect = 4.3
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
E+ L G+ F + + ++I
Sbjct: 133 EEAACLCAAF-ANHSGRPFRPNGLLDKAVSNVIA 165
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 55.6 bits (135), Expect = 1e-08
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 30/154 (19%)
Query: 251 RRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLL--- 307
R+ + ++ + + ++ +KE Q L+ P+ D D LL
Sbjct: 212 RKVIKNVAEVKEYVSERVKEHHQSLD---------PNCPRD----------LTDCLLVEM 252
Query: 308 -EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIF 366
+ A T I V F G +TT+ + + L +L +P ++K+ E+D +
Sbjct: 253 EKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVI 312
Query: 367 AEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
P R ++D +M Y++ V+ E L+P
Sbjct: 313 --GPSRIPAIKDRQEMPYMDAVVHEIQRFITLVP 344
Score = 28.3 bits (64), Expect = 6.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
+ L++ L K G+ FD I ++I
Sbjct: 128 REAHFLLEAL-RKTQGQPFDPTFLIGCAPCNVIA 160
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 55.3 bits (134), Expect = 2e-08
Identities = 30/170 (17%), Positives = 65/170 (38%), Gaps = 37/170 (21%)
Query: 236 PWLWH-PLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDL 294
P + + P + + ++ + + + +KE ++ ++ + +D
Sbjct: 204 PIIDYFPGTHN------KLLKNVAFMKSYILEKVKEHQESMD---------MNNPQD--- 245
Query: 295 GKKKRMAFLDLLL----EASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGS 350
F+D L + + + T + G +TT+ + ++L LL
Sbjct: 246 -------FIDCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLK 298
Query: 351 HPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
HP KV E++ + +R M+D + M Y + V+ E DL+P
Sbjct: 299 HPEVTAKVQEEIERVI--GRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLP 346
Score = 27.9 bits (63), Expect = 7.4
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
E+ + LV++L K D + ++IC
Sbjct: 130 EEARCLVEEL-RKTKASPCDPTFILGCAPCNVIC 162
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 54.9 bits (133), Expect = 2e-08
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 301 AFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
+L + + S+ + V + F G +TT+ + + L+ +PH ++V
Sbjct: 248 VYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQK 307
Query: 361 ELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
E++ + R + D M Y + VI E DLIP
Sbjct: 308 EIEQVI--GSHRPPALDDRAKMPYTDAVIHEIQRLGDLIP 345
Score = 28.7 bits (65), Expect = 4.5
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
E+ + LV++L K G D +IIC
Sbjct: 129 EEARCLVEEL-RKSKGALLDNTLLFHSITSNIIC 161
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 54.9 bits (133), Expect = 2e-08
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 301 AFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCA 360
+FL + E ++ +T + G +T + + + LL HP + KV
Sbjct: 248 SFLIRMQEEEKNPNTEFYLKNLVMTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHE 307
Query: 361 ELDTIFAEDPDRKITMRDLNDMKYLERVIKE-----DLIP 395
E+D + +R+ D M Y+E VI E D+IP
Sbjct: 308 EIDRVI--GKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIP 345
Score = 28.3 bits (64), Expect = 4.9
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 120 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 153
E+ L+D L G D F++R ++I
Sbjct: 129 EEAGFLIDAL-RGTGGANIDPTFFLSRTVSNVIS 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 1e-07
Identities = 59/444 (13%), Positives = 115/444 (25%), Gaps = 145/444 (32%)
Query: 42 VFKWTKYGR--RYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDE-----DLV 94
+F W L +L ++ + NI L+
Sbjct: 184 IF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLL 238
Query: 95 ENSPF--SVITPTFHFKILD-V----FVDVFVEKCQILV---DK-LGDKCDGKAFDVYP- 142
++ P+ ++ +L V + F C+IL+ K + D
Sbjct: 239 KSKPYENCLL-------VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 143 ------FITRCAMDIICGAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLG--DK 194
++ K+ R P + + E + +
Sbjct: 292 DHHSMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 195 CDGKAFDTAMGIEINAQRDSKSDYVRAVYE----------ISELTIVRSLRPWLWHP--- 241
+ T + +N + R +++ I + + +W
Sbjct: 350 VNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSL-----IWFDVIK 401
Query: 242 --------------LVFKWTKYGRRYNQCLSVLHG----FTNKVIKER---KQLLEE--- 277
LV K K + K+ E + +++
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 278 -KKNIGGDKPDTTEDE-------------DLGKKK---RMAFLDL-LLEASEHASTPLTD 319
K D D+ + ++ RM FLD LE
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ---------- 505
Query: 320 VEIREEVDTFMFEGHDTTTAGICWSLF-LLGSHPHYQDKVCAELDTIFAEDPDRKITMRD 378
+IR HD+T S+ L Y+ I DP + +
Sbjct: 506 -KIR----------HDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNA 547
Query: 379 LNDMKYLERVIKEDLIPTIRTKYA 402
+ + +L + I+E+L I +KY
Sbjct: 548 I--LDFLPK-IEENL---ICSKYT 565
Score = 41.4 bits (96), Expect = 6e-04
Identities = 45/283 (15%), Positives = 76/283 (26%), Gaps = 95/283 (33%)
Query: 106 FHFK-ILDVFVDVFVE--KCQILVDKLGDKCDGKAFDVYPFITRCAMDIICGAKWHSHRK 162
+ +K IL VF D FV+ C+ + D +++ +D I +K
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMP-----------KSILSKEEIDHIIMSK---DAV 61
Query: 163 MITPTFHFKILDVF-------VDVFVEKC-----QILVDKLGDKCDGKAFDTAMGIEINA 210
T ++ V FVE+ + L+ + + + T M IE
Sbjct: 62 SGT----LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE--- 114
Query: 211 QRDSKSDYVRAV--YEISELTIVRSLRPWLW----HPLVF--------K----------- 245
QRD + + Y +S L LR L V K
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 246 -----------WTKYGR--RYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDE 292
W L +L ++ + NI
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----KLRIHSI 230
Query: 293 DLGKKKRMAFLD------LLLEASEHASTPLTDVEIREEVDTF 329
+ R LL+ L +V+ + + F
Sbjct: 231 Q--AELRRLLKSKPYENCLLV---------LLNVQNAKAWNAF 262
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 71/441 (16%), Positives = 124/441 (28%), Gaps = 151/441 (34%)
Query: 16 DYV---RAVYEISELTIVRSL----RPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIK 68
DY R +Y+ +V L L L+ + + Q L++L
Sbjct: 168 DYFEELRDLYQTYH-VLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNIL--------- 216
Query: 69 ERKQLLEEKKNIGGDKPDTTEDEDLVENSPFSV----ITPTFHFKILDVFVDVFVEKCQI 124
+ LE P T D+D + + P S + H+ + ++
Sbjct: 217 ---EWLEN--------PSNTPDKDYLLSIPISCPLIGVIQLAHYVVT----------AKL 255
Query: 125 LVDKLGDKCDGKAFDVYPFITRCAMDIICGA------KWHSHRKMITPTFHFKILDVFVD 178
L G+ T + ++ W S F
Sbjct: 256 L-----GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES----------------FFV 294
Query: 179 VFVEKCQILVDKLGDKCDGKAFDTAMGIEINAQRDSKSDYVRAVYEISE------LTIVR 232
+ +L +G +C +A+ + + DS E +E L+ +
Sbjct: 295 SVRKAITVLF-FIGVRCY-EAYPN-TSLPPSILEDSL--------ENNEGVPSPMLS-IS 342
Query: 233 SLRPWLWHPLVFKWTKYGRRYNQ-CLSVLHGFTNKVI--------KERKQLLEEKKNIGG 283
+L V K + Q +S+++G N V+ L + K G
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 284 DKPDTTEDEDLGKKKR--MAFL--------DLLLEASEHASTPLTDVEIREEVDTFMFEG 333
D+ E +K + FL LL+ AS+ + L + F
Sbjct: 403 DQSRIPFSE---RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVS-------FNA 452
Query: 334 HDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDL 393
D I P Y DT D +R L+ I E +
Sbjct: 453 KD---IQI----------PVY--------DTFDGSD------LRVLSGS------ISERI 479
Query: 394 IPTIRTKYALNWTRSLPKTQT 414
+ I + W + T
Sbjct: 480 VDCIIRL-PVKWETTTQFKAT 499
Score = 35.4 bits (81), Expect = 0.042
Identities = 46/254 (18%), Positives = 71/254 (27%), Gaps = 108/254 (42%)
Query: 59 LHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLVENSPFSVITPTFHFKILDVFVDVF 118
L+G + RK K + D+ + PFS F + L V
Sbjct: 386 LYGLNLTL---RKA-----------KAPSGLDQSRI---PFSERKLKFSNRFLPVAS--- 425
Query: 119 VEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICGAKWHSHRKMITPTFHFKILDVF-- 176
PF HSH ++ P D+
Sbjct: 426 -----------------------PF--------------HSH--LLVPASDLINKDLVKN 446
Query: 177 -VDVFVEKCQILVDKLGDKCDGKAFDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLR 235
V + QI V +DT G ++ R + + I+R
Sbjct: 447 NVSFNAKDIQIPV-----------YDTFDGSDL---RVLSGSISERIVD----CIIRL-- 486
Query: 236 PWLW---------HPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERK--QLLEEKKNIGGD 284
P W H L F G L VL T++ K+ +++ + G
Sbjct: 487 PVKWETTTQFKATHILDF-----GPGGASGLGVL---THR-NKDGTGVRVI-----VAGT 532
Query: 285 KPDTTEDEDLGKKK 298
D D+D G K+
Sbjct: 533 -LDINPDDDYGFKQ 545
Score = 31.6 bits (71), Expect = 0.59
Identities = 23/143 (16%), Positives = 38/143 (26%), Gaps = 65/143 (45%)
Query: 204 MGIEINAQRDSKSDYVRAV-----------YEISELTIVRSLRPWLWHPLVFKWTKYGRR 252
MG+++ + S + V Y S L IV +
Sbjct: 1631 MGMDL---YKT-SKAAQDVWNRADNHFKDTYGFSILDIVIN------------------- 1667
Query: 253 YNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEH 312
N +H F GG+K GK+ R + ++ E
Sbjct: 1668 -NPVNLTIH-F------------------GGEK---------GKRIRENYSAMIFETIVD 1698
Query: 313 ASTPLTDV--EIREEVDTFMFEG 333
+ EI E ++ F
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRS 1721
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 38.4 bits (90), Expect = 0.003
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
D + + + P+T E + + G DT + +S+ L P ++ ++
Sbjct: 219 DAISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIER 278
Query: 362 LDTI 365
+ I
Sbjct: 279 PERI 282
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 37.3 bits (87), Expect = 0.007
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
DL+ L SE+ L+D +I + + + + ++ L ++P + V A+
Sbjct: 239 DLISILCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLAD 298
Query: 362 LDTI 365
+
Sbjct: 299 RSLV 302
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 37.3 bits (87), Expect = 0.008
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
DL+ + E P+ D V + G DT + + + L HP ++ E
Sbjct: 226 DLITRILNVEIDGKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRRE 285
Query: 362 LDTI 365
+
Sbjct: 286 PLKL 289
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 36.8 bits (86), Expect = 0.009
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D++ + S+ L++ ++ + G D T + + L
Sbjct: 202 DIMSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDI 252
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 36.9 bits (86), Expect = 0.011
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
DL+ + SE + + + + + G DT + + + L HP ++ ++
Sbjct: 225 DLITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSD 284
Query: 362 LDTI 365
+
Sbjct: 285 PLKL 288
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 36.8 bits (86), Expect = 0.012
Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
DL + + P T E R +F G DT A I L HP Q +
Sbjct: 204 DLFSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLRER 263
Query: 362 LDTI 365
D I
Sbjct: 264 PDLI 267
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 35.3 bits (82), Expect = 0.029
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL+ L +E L D E + GH TTT + + L HP
Sbjct: 211 DLISRLVLAEVDGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHP 261
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 35.3 bits (82), Expect = 0.030
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 304 DL---LLEASEHAST-PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D L+ A A + I T + G+DT T + S+ LL P
Sbjct: 218 DAISHLVAAGVGADGDTAGTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRP 270
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 35.3 bits (82), Expect = 0.033
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 306 LLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
+ A +T E V + + G DTT GI +++ L P
Sbjct: 226 CIHAFSDTG-EITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFP 271
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 35.0 bits (81), Expect = 0.042
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 18/101 (17%)
Query: 281 IGGDKPDTTEDEDLGKKKRMAFL----------------DLL--LEASEHASTPLTDVEI 322
+G PD D D + DL L +E L+ EI
Sbjct: 205 LGFGDPDLATDFDEFMQVSADIGAYATALAEDRRVNHHDDLTSSLVEAEVDGERLSSREI 264
Query: 323 REEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELD 363
+ G++TT I + L +P +D+ ++ D
Sbjct: 265 ASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSDFD 305
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 34.5 bits (80), Expect = 0.054
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
++ L S + LT E + + + G++TTT I + ++ +P
Sbjct: 158 GIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENP 208
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 33.4 bits (77), Expect = 0.12
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DLL L + +PL+ I + GH+TTT + ++ L +H
Sbjct: 224 DLLTLLVRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHR 274
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 33.4 bits (77), Expect = 0.13
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL+ L +SE L+D E+ E + G +TT + L +
Sbjct: 200 DLVSVLVSSEVDGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNR 250
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 32.5 bits (75), Expect = 0.22
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 304 DLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQ 355
DL + A++ L+++E M G++TTT I ++ + +
Sbjct: 185 DLT---GKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWD 233
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 32.6 bits (75), Expect = 0.23
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAE 361
DL+ L A E + LT+ EI + + GH+TT I + + P + A+
Sbjct: 226 DLMSGLVAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAAD 285
Query: 362 LDTI 365
Sbjct: 286 GSRA 289
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 32.6 bits (75), Expect = 0.24
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D+L L +E + L+ E+ V + G DTT I +++ L P
Sbjct: 224 DVLTMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSP 274
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 32.3 bits (74), Expect = 0.27
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D++ L S+ + D I GHDTT++ ++ L +P
Sbjct: 237 DVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNP 287
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 32.2 bits (74), Expect = 0.30
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 316 PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
+T E V + G+DTT + + L +P
Sbjct: 249 NMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNP 285
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 31.9 bits (73), Expect = 0.44
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D+ + + P++D + GHDTT+A + L P
Sbjct: 259 DVATVIANAVVDGEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDP 309
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 31.5 bits (72), Expect = 0.52
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D++ L ++ L+D E V G++TT I + HP
Sbjct: 238 DIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHP 288
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 31.5 bits (72), Expect = 0.54
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 316 PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTI 365
LT ++ D + G++TT I ++ L + P + +
Sbjct: 238 DLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRDGSADV 287
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 31.1 bits (71), Expect = 0.66
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 317 LTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
+T+ E + F GH I + L P
Sbjct: 218 ITESEAIATILVFYAVGHMAIGYLIASGIELFARRP 253
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 31.1 bits (71), Expect = 0.75
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 304 DLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
+L + A + ++D TF G +T + + +L L P
Sbjct: 205 ELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRP 253
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 31.1 bits (71), Expect = 0.78
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 304 DL---LLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
L LL S+ L+ E+ + GH+TT I + L +HP
Sbjct: 205 ALLSSLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHP 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.93
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 182 EKCQILVDKLGDKCDGKAF--DTAMGIEINAQ 211
EK + KL K + D+A + I A
Sbjct: 18 EKQAL--KKLQASL--KLYADDSAPALAIKAT 45
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 30.7 bits (70), Expect = 0.98
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 303 LDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
L L+ S+ + LT E+ + GH+TT I ++ L SHP
Sbjct: 234 LSALVRTSDEDGSRLTSEELLGMAHILLVAGHETTVNLIANGMYALLSHP 283
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 303 LDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
L L+ + L+ E+ + G + + + I +LL +HP
Sbjct: 212 LSALIRVQDDDDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHP 261
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 287 DTTEDEDLGKKKRMAFLDLLLEASEHAS-----------TPLTDVEIREEVDTFMFEGHD 335
+ +L+L+ +H + + L+D+E + + G++
Sbjct: 153 FRLGKPGEIFELGKKYLELIGYVKDHLNSGTEVVSRVVNSNLSDIEKLGYIILLLIAGNE 212
Query: 336 TTTAGICWSLFLLGSHPHYQ 355
TTT I S+ +Q
Sbjct: 213 TTTNLISNSVIDFTRFNLWQ 232
>1dkq_A Phytase; histidine acid phosphatase fold, hydrolase; HET: IHP;
2.05A {Escherichia coli} SCOP: c.60.1.2 PDB: 1dkp_A*
1dkm_A 1dkn_A 1dko_A 1dkl_A
Length = 410
Score = 30.3 bits (67), Expect = 1.3
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 2/96 (2%)
Query: 262 GFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVE 321
G+ + L N T + + + + LDL+ A
Sbjct: 233 GWGRITDSHQWNTLLSLHNAQFYLLQRTPE--VARSRATPLLDLIKTALTPHPPQKQAYG 290
Query: 322 IREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDK 357
+ GHDT A + +L L + P D
Sbjct: 291 VTLPTSVLFIAGHDTNLANLGGALELNWTLPGQPDN 326
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot,
hormone-growth factor complex; HET: NAG; 2.42A {Homo
sapiens} SCOP: g.17.1.7
Length = 206
Score = 29.0 bits (64), Expect = 2.2
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 193 DKCDGKAFDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKWTK 248
D+ + AM EI S+ +S+ + R L+ WLW P+++ W
Sbjct: 79 DQLLRQRPSGAMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAWND 137
Query: 249 YGRRY 253
G R+
Sbjct: 138 LGSRF 142
Score = 28.6 bits (63), Expect = 3.5
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKWTKYGRRY 52
AM EI S+ +S+ + R L+ WLW P+++ W G R+
Sbjct: 89 AMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAWNDLGSRF 142
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 29.5 bits (67), Expect = 2.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL L + LTD EI + + GH+TT + I ++ L +HP
Sbjct: 212 DLTSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHP 262
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 29.5 bits (67), Expect = 2.4
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL+ L + L++ E+ + + G+++TT I ++LL + P
Sbjct: 224 DLVSALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRP 274
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 29.5 bits (67), Expect = 2.5
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 303 LDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
L L+L+A + ++ EI V TF+F GH+T + + ++ L +HP
Sbjct: 206 LALMLDAHDRG--LMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLLAHP 253
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 29.1 bits (66), Expect = 2.7
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D++ L + + + + + G+ T I + L HP
Sbjct: 210 DIISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHP 260
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 29.1 bits (66), Expect = 3.2
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL + + H L D E+R V T + G++TT + +++ HP
Sbjct: 224 DLTSDIVRAFHDG-VLDDYELRTLVATVLVAGYETTNHQLALAMYDFAQHP 273
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 28.4 bits (64), Expect = 4.7
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
L+ L A + A+ + E+ + GH+TT + S+ L HP
Sbjct: 214 GLVGALVADQLANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHP 264
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.3 bits (64), Expect = 5.0
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL+ L +E + D+ + T + HDTT I LL P
Sbjct: 207 DLISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSP 257
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.4 bits (64), Expect = 5.2
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
D++ L E LT+ + +F G D+ + + + LL +HP
Sbjct: 216 DIISRLNDGE-----LTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHP 261
>2p7v_A Regulator of sigma D; RSD, regulator of sigma 70, sigma 70 domain
4, transcription, regulation, helix-turn-helix; 2.60A
{Escherichia coli}
Length = 158
Score = 27.5 bits (61), Expect = 5.5
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 262 GFTNKVI----KERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLL 307
+NK++ RK LL N+ G KP L +K F L+
Sbjct: 13 RGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLV 62
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 28.0 bits (63), Expect = 6.1
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
LL L A + L E+ + GH+TT I L HP
Sbjct: 213 GLLDELIARQLEEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHP 263
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 28.0 bits (63), Expect = 6.5
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 303 LDLLLEASEHAST--PLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
LL+ A + L+ E+R+ + + G++TT I ++ L + P
Sbjct: 211 TSLLIAARDDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTRP 262
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.0 bits (63), Expect = 7.4
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL+ L +T ++ + + G +TTT+ I S LL P
Sbjct: 219 DLISKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRP 269
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 27.6 bits (62), Expect = 7.6
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 303 LDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
+ +LL+ E LT+ E GH+TT I S+ L HP
Sbjct: 207 ISMLLKGREKDK--LTEEEAASTCILLAIAGHETTVNLISNSVLCLLQHP 254
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 27.6 bits (62), Expect = 7.6
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 304 DLL--LEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
DL A + L + + GH+TT I + L SHP
Sbjct: 215 DLFSRQIARQRQEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHP 265
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI
cobalt, magnesium, metal-binding, nucleotide-binding,
one-C metabolism; 2.35A {Burkholderia pseudomallei}
Length = 399
Score = 27.4 bits (62), Expect = 8.6
Identities = 11/26 (42%), Positives = 12/26 (46%), Gaps = 8/26 (30%)
Query: 351 HPHYQDKVC-----AELDTIFAEDPD 371
HP DKV A LD I A+D
Sbjct: 20 HP---DKVADQISDAILDAILAQDKY 42
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM
ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1
d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A*
1rg9_A* 1xra_A 1xrb_A 1xrc_A
Length = 383
Score = 27.4 bits (62), Expect = 9.7
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 8/26 (30%)
Query: 351 HPHYQDKVC-----AELDTIFAEDPD 371
HP DK+ A LD I +DP
Sbjct: 14 HP---DKIADQISDAVLDAILEQDPK 36
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 27.2 bits (61), Expect = 9.8
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 317 LTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHP 352
TD E+R M G D + I + + HP
Sbjct: 221 ATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHP 256
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,819,055
Number of extensions: 423769
Number of successful extensions: 948
Number of sequences better than 10.0: 1
Number of HSP's gapped: 854
Number of HSP's successfully gapped: 127
Length of query: 421
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 325
Effective length of database: 4,021,377
Effective search space: 1306947525
Effective search space used: 1306947525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)