RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16903
(421 letters)
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 73.9 bits (180), Expect = 7e-15
Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 35/285 (12%)
Query: 123 QILVDKLGDKCDGKAFDVYPFITRCAMDIIC-GAKWHSHRKMITPTFH-FKILDVFVDVF 180
+ LVD+ V I + I G +W + R+ T F + V+
Sbjct: 59 EALVDQAEAFSGRGKIAVVDPIFQGYGVIFANGERWRALRRFSLATMRDFGMGKRSVEER 118
Query: 181 VEKCQILVDKLGDKCDGKAFD---------------TAMGIEINAQRDSKSDYVRAV-YE 224
+++ + + K G D G + + +
Sbjct: 119 IQEEARCLVEELRKSKGALLDNTLLFHSITSNIICSIVFGKRFDYKDPVFLRLLDLFFQS 178
Query: 225 ISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGD 284
S ++ S L+ + + R+ + L ++ F + +++ + L+
Sbjct: 179 FSLISSFSSQVFELFSGFLKHFPGTHRQIYRNLQEINTFIGQSVEKHRATLDPSNP---- 234
Query: 285 KPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWS 344
+ +L + + S+ + V + F G +TT+ + +
Sbjct: 235 -----------RDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYG 283
Query: 345 LFLLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVI 389
L+ +PH ++V E++ + R + D M Y + VI
Sbjct: 284 FLLMLKYPHVTERVQKEIEQVIG--SHRPPALDDRAKMPYTDAVI 326
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 61.2 bits (147), Expect = 7e-11
Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 30/289 (10%)
Query: 123 QILVDKLGDKCDGKAFDVYPFITRCAMDIICGAKWHSHRKMITPTFHFKILDVFVDVFVE 182
+LV + + + A+ I +W R +++PTF L V + +
Sbjct: 65 TVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQ 124
Query: 183 KCQILVDKLGDKCDGKA----------------FDTAMGIEINAQRDSKSDYVRAVYEIS 226
+LV L + + T+ G+ I++ + + +V ++
Sbjct: 125 YGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLL 184
Query: 227 ELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKP 286
+ + + F K +K K+ E
Sbjct: 185 RFDFLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLE--------- 235
Query: 287 DTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLF 346
+ + +D + L+D+E+ + F+F G++TT++ + + ++
Sbjct: 236 ---DTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMY 292
Query: 347 LLGSHPHYQDKVCAELDTIFAEDPDRKITMRDLNDMKYLERVIKEDLIP 395
L +HP Q K+ E+D + + M+YL+ V+ E L
Sbjct: 293 ELATHPDVQQKLQEEIDAVLPNKAPPTYDT--VLQMEYLDMVVNETLRL 339
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 55.5 bits (132), Expect = 5e-09
Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 34/255 (13%)
Query: 154 GAKWHSHRKMITPTFH-FKILDVFVDVFVEKCQILVDKLGDKCDGKAFD----------- 201
G W HR++ +F F + + + + + G+ FD
Sbjct: 91 GRGWVDHRRLAVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSN 150
Query: 202 ----TAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHP-LVFKWTKYGRRYNQC 256
G + + E EL S+ + P + ++ +
Sbjct: 151 ITNLIIFGERFTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGILPFGKHQQLFRN 210
Query: 257 LSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTP 316
+V++ F +++I++ L + A+LD + + S+
Sbjct: 211 AAVVYDFLSRLIEKASV---------------NRKPQLPQHFVDAYLDEMDQGKNDPSST 255
Query: 317 LTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDTIFAEDPDRKITM 376
+ + V + G +TTT + W++ + +P+ Q +V E+D I P+ K +
Sbjct: 256 FSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIM--GPNGKPSW 313
Query: 377 RDLNDMKYLERVIKE 391
D M Y E V+ E
Sbjct: 314 DDKCKMPYTEAVLHE 328
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 43.9 bits (102), Expect = 3e-05
Identities = 36/269 (13%), Positives = 85/269 (31%), Gaps = 5/269 (1%)
Query: 123 QILVDKLGDKCDGKAFDVYPFITRCAMDIIC-GAKWHSHRKMITPTF-HFKILDVFVDVF 180
+ L+D + F + R + G KW R+ T +F + ++
Sbjct: 60 EALIDLGEEFSGRGIFPLAERANRGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDR 119
Query: 181 VEKCQILVDKLGDKCDGKAFDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH 240
V++ + + K D + S ++ + + + +
Sbjct: 120 VQEEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLNLMEKLNEN 179
Query: 241 PLVFKWTKYGRRYN-QCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKR 299
+ N + T+ + + ++ + + D + +
Sbjct: 180 IKILSSPWIQICNNFSPIIDYFPGTHNKLLKNVAFMKSYILEKVKEHQESMDMNNPQDFI 239
Query: 300 MAFLDLLLEASEHASTPLTDVEIREEVDTFMFEGHDTTTAGICWSLFLLGSHPHYQDKVC 359
FL + + + + T + G +TT+ + ++L LL HP KV
Sbjct: 240 DCFLMKMEKEKHNQPSEFTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQ 299
Query: 360 AELDTIFAEDPDRKITMRDLNDMKYLERV 388
E++ + + M+D + M Y + V
Sbjct: 300 EEIERVIGRNRS--PCMQDRSHMPYTDAV 326
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 33.6 bits (75), Expect = 0.037
Identities = 23/207 (11%), Positives = 53/207 (25%), Gaps = 35/207 (16%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIEINAQRD 213
+ RKM+TP F + + +D + +G + D
Sbjct: 99 PPEHTRLRKMLTPEFTVRRIRRMEPAIQSLIDDRLDL--LEAEGPSADLQG--------- 147
Query: 214 SKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQ 273
+ L+ R + + + + +
Sbjct: 148 ---------------LFADPVGAHALCELLGIPRDDQREFVRRIRRNADLSRGLKARAAD 192
Query: 274 LLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMFEG 333
+ + D L +++ LL +TD E++ + G
Sbjct: 193 SAAFNRYL---------DNLLARQRADPDDGLLGMIVRDHGDNVTDEELKGLCTALILGG 243
Query: 334 HDTTTAGICWSLFLLGSHPHYQDKVCA 360
+T I + + L +P + +
Sbjct: 244 VETVAGMIGFGVLALLDNPGQIELLFE 270
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/208 (9%), Positives = 54/208 (25%), Gaps = 29/208 (13%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGI--EINAQ 211
G+ + + ++ E+ + V + + F+ A I +
Sbjct: 84 GSAHIHRKMLFLSLMTPPHQKRLAELMTEEWKAAVTRWEKADEVVLFEEAKEILCRVACY 143
Query: 212 RDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKER 271
V E ++ + + + + R + +I++
Sbjct: 144 WAGVPLKETEVKERAD-DFIDMVDAFGAVGPRHWKGRRARPR------AEEWIEVMIEDA 196
Query: 272 KQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEASEHASTPLTDVEIREEVDTFMF 331
+ L K L + ++ + L E+ +
Sbjct: 197 RA-------------------GLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELI-NVL 236
Query: 332 EGHDTTTAGICWSLFLLGSHPHYQDKVC 359
+ + +S L HP Y++ +
Sbjct: 237 RPIVAISYFLVFSALALHEHPKYKEWLR 264
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Halothiobacillus neapolitanus
[TaxId: 927]}
Length = 108
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 13/70 (18%)
Query: 316 PLTDVEIREEVD-----------TFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDT 364
P+ IR ++ + + W L G D V AE++
Sbjct: 19 PMNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKLPFFGE--QNVDNVLAEIEA 76
Query: 365 IFAEDPDRKI 374
+ P ++
Sbjct: 77 CRSAYPTHQV 86
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 28.2 bits (61), Expect = 2.3
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 6/126 (4%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIEINAQRD 213
++R + F + + Q V +L D F T +
Sbjct: 107 PPTHTAYRGLTLNWFQPASIRKLEENIRRIAQASVQRLLDFDGECDFMTDCALYYPLHVV 166
Query: 214 SKSDYVRAVYEISELTIVRSLRPWLWHPLV------FKWTKYGRRYNQCLSVLHGFTNKV 267
+ V E L + + + RR+++ ++ + + N
Sbjct: 167 MTALGVPEDDEPLMLKLTQDFFGVHEPDEQAVAAPRQSADEAARRFHETIATFYDYFNGF 226
Query: 268 IKERKQ 273
+R+
Sbjct: 227 TVDRRS 232
>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
Length = 206
Score = 27.3 bits (60), Expect = 3.5
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 200 FDTAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKWTKYGRRY 253
AM EI S+ +S+ + R L+ WLW P+++ W G R+
Sbjct: 86 PSGAMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAWNDLGSRF 142
Score = 26.1 bits (57), Expect = 6.5
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 2 AMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKWTKYGRRY 52
AM EI S+ +S+ + R L+ WLW P+++ W G R+
Sbjct: 89 AMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAWNDLGSRF 142
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 27.4 bits (60), Expect = 4.5
Identities = 14/100 (14%), Positives = 25/100 (25%)
Query: 53 NQCLSVLHGFTNKVIKERKQLLEEKKNIGGDKPDTTEDEDLVENSPFSVITPTFHFKILD 112
N L N + +Q +++ I + D D P +LD
Sbjct: 404 NYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLD 463
Query: 113 VFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDII 152
V+KL + A + +
Sbjct: 464 EECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFC 503
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 26.7 bits (57), Expect = 5.7
Identities = 18/141 (12%), Positives = 35/141 (24%)
Query: 154 GAKWHSHRKMITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDTAMGIEINAQRD 213
G R+++ P F + +D LVD+L + G+ D +
Sbjct: 86 GPNHRKLRRLVAPAFSARRVDAMRPAVEAMVTGLVDRLAELPAGEPVDLRQELAYPLPIA 145
Query: 214 SKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYGRRYNQCLSVLHGFTNKVIKERKQ 273
+ + + + + R + L L +
Sbjct: 146 VIGHLMGVPQDRRDGFRALVDGVFDTTLDQAEAQANTARLYEVLDQLIAAKRATPGDDMT 205
Query: 274 LLEEKKNIGGDKPDTTEDEDL 294
L D E+L
Sbjct: 206 SLLIAARDDEGDGDRLSPEEL 226
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 457
Score = 26.5 bits (58), Expect = 7.5
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 266 KVIKERKQLLEEKKNIGGDKPDTTEDEDLGKKKRMAFLDLLLEA-----SEHASTPLTDV 320
I + L++K + D+D+ +K A ++LLE H T+
Sbjct: 29 MKIPMKAMELKQKYGLDFKGEFIPTDKDMMEKLFKAGFEMLLECGIYCTDTHRIVKYTED 88
Query: 321 EIREEVDT 328
EI + ++
Sbjct: 89 EIWDAINN 96
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 25.6 bits (56), Expect = 8.0
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 316 PLTDVEIREEVD-----------TFMFEGHDTTTAGICWSLFLLGSHPHYQDKVCAELDT 364
LTD +I ++++ + + H T + L + + E++
Sbjct: 13 ELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDA--AGILMEINN 70
Query: 365 IFAEDPDRKI 374
P+ I
Sbjct: 71 ARNTFPNHYI 80
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 138
Score = 25.6 bits (56), Expect = 8.4
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 316 PLTDVEIREEVDTFMFEG-----------HDTTTAGICWSLFLLGSHPHYQDKVCAELDT 364
LTD +I++++D + + H W L L V E++
Sbjct: 13 DLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDP--AAVLFEINA 70
Query: 365 IFAEDPDRKI 374
+ I
Sbjct: 71 CRKARSNFYI 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.428
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,702,366
Number of extensions: 84193
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 19
Length of query: 421
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 333
Effective length of database: 1,199,356
Effective search space: 399385548
Effective search space used: 399385548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.5 bits)