Query psy16905
Match_columns 68
No_of_seqs 140 out of 1266
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 16:41:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156|consensus 100.0 1E-30 2.2E-35 149.8 6.3 68 1-68 345-413 (489)
2 PLN02500 cytochrome P450 90B1 100.0 4.8E-29 1E-33 142.7 6.4 68 1-68 343-410 (490)
3 KOG0158|consensus 100.0 1.3E-28 2.7E-33 141.1 6.1 68 1-68 353-421 (499)
4 PLN02971 tryptophan N-hydroxyl 100.0 2.8E-28 6E-33 141.1 6.9 68 1-68 386-454 (543)
5 PLN02183 ferulate 5-hydroxylas 99.9 4.7E-28 1E-32 139.4 6.6 68 1-68 363-430 (516)
6 PTZ00404 cytochrome P450; Prov 99.9 5.9E-28 1.3E-32 137.9 6.7 68 1-68 342-411 (482)
7 PLN02290 cytokinin trans-hydro 99.9 5.7E-28 1.2E-32 138.9 6.1 68 1-68 374-442 (516)
8 PLN02774 brassinosteroid-6-oxi 99.9 7.9E-28 1.7E-32 137.1 6.4 68 1-68 326-393 (463)
9 PLN03141 3-epi-6-deoxocathaste 99.9 8.9E-28 1.9E-32 136.5 6.6 68 1-68 314-381 (452)
10 PLN02394 trans-cinnamate 4-mon 99.9 9.2E-28 2E-32 137.7 6.6 68 1-68 352-420 (503)
11 PLN02738 carotene beta-ring hy 99.9 1.1E-27 2.4E-32 140.6 7.0 68 1-68 449-516 (633)
12 PF00067 p450: Cytochrome P450 99.9 8.6E-28 1.9E-32 134.3 5.9 68 1-68 321-389 (463)
13 PLN00168 Cytochrome P450; Prov 99.9 2.9E-27 6.2E-32 136.2 6.5 68 1-68 366-434 (519)
14 PLN00110 flavonoid 3',5'-hydro 99.9 3.4E-27 7.4E-32 135.7 6.7 68 1-68 348-416 (504)
15 PLN02169 fatty acid (omega-1)- 99.9 3.7E-27 8E-32 135.5 6.4 68 1-68 354-423 (500)
16 PLN03234 cytochrome P450 83B1; 99.9 4.3E-27 9.3E-32 134.8 6.3 68 1-68 347-416 (499)
17 PLN02966 cytochrome P450 83A1 99.9 2.7E-27 5.8E-32 135.9 5.3 68 1-68 350-419 (502)
18 PLN02196 abscisic acid 8'-hydr 99.9 7.7E-27 1.7E-31 133.1 5.7 68 1-68 326-393 (463)
19 PLN02687 flavonoid 3'-monooxyg 99.9 1.6E-26 3.4E-31 133.2 6.7 68 1-68 356-424 (517)
20 PLN03195 fatty acid omega-hydr 99.9 5E-27 1.1E-31 135.1 4.5 68 1-68 371-440 (516)
21 PLN02655 ent-kaurene oxidase 99.9 1.5E-26 3.3E-31 131.9 6.4 68 1-68 320-388 (466)
22 PLN03018 homomethionine N-hydr 99.9 2.7E-26 5.8E-31 132.8 7.1 68 1-68 373-441 (534)
23 PLN02302 ent-kaurenoic acid ox 99.9 1.9E-26 4.1E-31 131.7 6.3 68 1-68 350-417 (490)
24 PLN02426 cytochrome P450, fami 99.9 1.6E-26 3.6E-31 132.9 5.9 68 1-68 353-422 (502)
25 KOG0157|consensus 99.9 1.4E-26 3.1E-31 133.1 5.4 68 1-68 351-420 (497)
26 PLN03112 cytochrome P450 famil 99.9 3.6E-26 7.9E-31 131.4 6.6 68 1-68 355-423 (514)
27 KOG0159|consensus 99.9 1.6E-26 3.4E-31 131.9 4.3 68 1-68 376-443 (519)
28 PLN02987 Cytochrome P450, fami 99.9 7.9E-26 1.7E-30 129.4 7.0 68 1-68 329-396 (472)
29 PLN02936 epsilon-ring hydroxyl 99.9 1.8E-25 3.9E-30 128.2 5.9 68 1-68 336-404 (489)
30 PLN02648 allene oxide synthase 99.9 9.1E-25 2E-29 125.4 6.8 68 1-68 333-404 (480)
31 COG2124 CypX Cytochrome P450 [ 99.9 1.3E-23 2.9E-28 118.8 5.8 67 2-68 280-346 (411)
32 KOG0684|consensus 99.8 9.7E-22 2.1E-26 111.2 4.0 68 1-68 333-404 (486)
33 PF08492 SRP72: SRP72 RNA-bind 88.6 0.45 9.8E-06 20.7 1.7 6 63-68 44-49 (59)
34 PF12508 DUF3714: Protein of u 85.2 1.7 3.7E-05 23.5 3.0 21 24-44 74-94 (200)
35 PRK14759 potassium-transportin 83.3 0.51 1.1E-05 17.5 0.4 6 62-67 24-29 (29)
36 PF09604 Potass_KdpF: F subuni 82.3 0.59 1.3E-05 16.8 0.4 6 62-67 20-25 (25)
37 PF15300 INT_SG_DDX_CT_C: INTS 75.0 1.9 4E-05 19.2 0.9 13 3-15 42-54 (65)
38 TIGR02115 potass_kdpF K+-trans 71.7 0.77 1.7E-05 16.6 -0.6 6 62-67 19-24 (26)
39 PF11138 DUF2911: Protein of u 66.8 11 0.00023 19.5 2.7 21 24-44 51-71 (145)
40 PF11227 DUF3025: Protein of u 66.3 4.4 9.5E-05 22.2 1.3 18 49-66 194-211 (212)
41 TIGR03779 Bac_Flav_CT_M Bacter 66.1 9.8 0.00021 23.1 2.8 22 24-45 277-298 (410)
42 cd00250 CAS_like Clavaminic ac 53.4 26 0.00056 19.4 3.0 34 33-68 221-254 (262)
43 PF14550 Peptidase_U35_2: Puta 52.0 15 0.00032 18.5 1.7 21 24-44 72-92 (122)
44 PRK06789 flagellar motor switc 49.8 27 0.00058 16.0 3.0 39 7-45 21-62 (74)
45 PRK05933 type III secretion sy 48.8 33 0.00072 20.5 2.9 41 5-45 318-362 (372)
46 smart00426 TEA TEA domain. 47.6 19 0.00041 16.2 1.5 19 2-20 8-26 (68)
47 PF14510 ABC_trans_N: ABC-tran 43.2 4.9 0.00011 18.4 -0.7 18 51-68 23-40 (85)
48 PF11059 DUF2860: Protein of u 41.3 34 0.00073 19.9 2.3 33 34-66 81-113 (297)
49 PF01629 DUF22: Domain of unkn 40.2 42 0.00092 16.6 2.2 24 32-55 60-83 (112)
50 KOG3768|consensus 38.7 20 0.00044 23.2 1.2 13 54-66 284-296 (888)
51 PF08105 Antimicrobial10: Metc 38.1 37 0.0008 14.2 1.7 19 47-65 25-44 (52)
52 PF09556 RE_HaeIII: HaeIII res 34.2 22 0.00049 20.6 0.9 14 2-15 173-186 (300)
53 PF01109 GM_CSF: Granulocyte-m 32.5 24 0.00052 17.7 0.7 13 3-16 15-27 (122)
54 PF11297 DUF3098: Protein of u 31.7 32 0.0007 15.5 1.0 12 56-67 30-41 (69)
55 smart00040 CSF2 Granulocyte-ma 31.3 27 0.00058 17.3 0.7 14 3-17 15-28 (121)
56 PF13953 PapC_C: PapC C-termin 25.5 74 0.0016 13.8 1.6 13 32-44 7-19 (68)
57 PF05489 Phage_tail_X: Phage T 24.5 51 0.0011 14.2 1.0 13 33-45 40-52 (60)
58 PF06249 EutQ: Ethanolamine ut 24.4 73 0.0016 16.7 1.7 13 34-46 123-135 (152)
59 COG5138 Uncharacterized conser 23.5 70 0.0015 16.8 1.5 19 32-50 33-51 (168)
60 KOG3841|consensus 23.3 65 0.0014 19.7 1.5 17 3-19 82-98 (455)
61 PF13765 PRY: SPRY-associated 22.8 37 0.00079 13.7 0.3 7 38-44 17-23 (49)
62 cd01669 TGS_Ygr210_C TGS_Ygr21 22.5 21 0.00045 16.2 -0.5 20 33-52 24-43 (76)
63 PF08783 DWNN: DWNN domain; I 22.3 68 0.0015 14.6 1.2 14 32-45 58-71 (74)
64 COG2098 Uncharacterized protei 22.1 92 0.002 15.5 1.6 19 2-20 40-58 (116)
65 KOG2882|consensus 21.8 18 0.00039 21.1 -0.8 30 32-61 197-227 (306)
66 PRK13724 conjugal transfer pro 21.4 42 0.00091 14.6 0.4 11 56-66 37-47 (65)
67 PRK08158 type III secretion sy 21.4 1.7E+02 0.0036 17.4 2.8 40 6-45 243-285 (303)
68 COG2521 Predicted archaeal met 21.3 78 0.0017 18.3 1.5 37 3-39 223-260 (287)
69 PF10894 DUF2689: Protein of u 21.3 41 0.0009 14.5 0.4 11 56-66 37-47 (61)
70 smart00511 ORANGE Orange domai 20.6 53 0.0011 13.0 0.6 13 5-17 8-20 (45)
71 COG5620 Uncharacterized conser 20.5 30 0.00064 18.7 -0.2 15 50-64 58-73 (200)
72 PF07145 PAM2: Ataxin-2 C-term 20.5 57 0.0012 10.6 0.8 9 57-65 8-16 (18)
73 KOG2376|consensus 20.4 60 0.0013 21.1 1.0 14 51-64 575-588 (652)
74 PF11649 T4_neck-protein: Viru 20.0 1.2E+02 0.0026 17.2 2.0 30 3-32 23-54 (230)
No 1
>KOG0156|consensus
Probab=99.97 E-value=1e-30 Score=149.79 Aligned_cols=68 Identities=40% Similarity=0.790 Sum_probs=66.4
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++|+|+|++|++|++|. ++|.+++|+.++||.||+||.|.++.|++|+||++|++|++|+||||+
T Consensus 345 lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl 413 (489)
T KOG0156|consen 345 LPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFL 413 (489)
T ss_pred CHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhc
Confidence 69999999999999999997 799999999999999999999999999999999999999999999996
No 2
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=4.8e-29 Score=142.70 Aligned_cols=68 Identities=31% Similarity=0.441 Sum_probs=65.9
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++.+.|.+.+|+.++|+.||||+.|.++.+++|+|+++|++|++|+||||+
T Consensus 343 lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl 410 (490)
T PLN02500 343 MEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQ 410 (490)
T ss_pred CHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhcc
Confidence 68999999999999999998889999999999999999999999999999999999999999999995
No 3
>KOG0158|consensus
Probab=99.95 E-value=1.3e-28 Score=141.07 Aligned_cols=68 Identities=37% Similarity=0.824 Sum_probs=66.4
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeec-CEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFG-QYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~-~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|+++||+|+||+||+++.+.|.+.+|..+. ++.|++|+.|.++.+++|+||++|++|++|+||||.
T Consensus 353 L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~ 421 (499)
T KOG0158|consen 353 LKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFE 421 (499)
T ss_pred CcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCC
Confidence 78999999999999999999999999999999 999999999999999999999999999999999995
No 4
>PLN02971 tryptophan N-hydroxylase
Probab=99.95 E-value=2.8e-28 Score=141.07 Aligned_cols=68 Identities=28% Similarity=0.628 Sum_probs=65.7
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++|+++|++|++|+++. ++|.+.+|+.++|+.||||+.|.++.+++|+|+++|+||++|+||||+
T Consensus 386 LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl 454 (543)
T PLN02971 386 LNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHL 454 (543)
T ss_pred CHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCC
Confidence 68999999999999999987 789999999999999999999999999999999999999999999995
No 5
>PLN02183 ferulate 5-hydroxylase
Probab=99.95 E-value=4.7e-28 Score=139.38 Aligned_cols=68 Identities=25% Similarity=0.607 Sum_probs=65.8
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++||++|++|++|+++...|.+.+|+.++|+.||||+.|.++.+++|+|+++|++|++|+||||+
T Consensus 363 L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl 430 (516)
T PLN02183 363 LTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFL 430 (516)
T ss_pred ChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhC
Confidence 68999999999999999998779999999999999999999999999999999999999999999995
No 6
>PTZ00404 cytochrome P450; Provisional
Probab=99.95 E-value=5.9e-28 Score=137.93 Aligned_cols=68 Identities=29% Similarity=0.527 Sum_probs=65.5
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeee-cCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQF-GQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~-~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++. ++|.+.+|+.+ +|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 342 L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl 411 (482)
T PTZ00404 342 TPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFL 411 (482)
T ss_pred ChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccC
Confidence 68999999999999999996 78999999999 9999999999999999999999999999999999995
No 7
>PLN02290 cytokinin trans-hydroxylase
Probab=99.95 E-value=5.7e-28 Score=138.89 Aligned_cols=68 Identities=32% Similarity=0.634 Sum_probs=65.7
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|||++|||+|++|++|+++.++|.+.+|+.++|+.||+|+.|.++.+++|+|+++| ++|++|+||||+
T Consensus 374 lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl 442 (516)
T PLN02290 374 LTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFA 442 (516)
T ss_pred ChHHHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccC
Confidence 68999999999999999988899999999999999999999999999999999999 899999999995
No 8
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=7.9e-28 Score=137.06 Aligned_cols=68 Identities=29% Similarity=0.406 Sum_probs=65.6
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++.+.|.+.+|+.++|+.||||+.|.++.+.+|+|+++|++|++|+||||+
T Consensus 326 lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl 393 (463)
T PLN02774 326 MRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWL 393 (463)
T ss_pred CcHHHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcC
Confidence 68999999999999999988789999999999999999999999999999999999999999999995
No 9
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=8.9e-28 Score=136.51 Aligned_cols=68 Identities=25% Similarity=0.382 Sum_probs=65.6
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|||+|++|++|+++.++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 314 lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl 381 (452)
T PLN03141 314 LPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQ 381 (452)
T ss_pred cHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCccccc
Confidence 68999999999999999888889999999999999999999999999999999999999999999995
No 10
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.95 E-value=9.2e-28 Score=137.65 Aligned_cols=68 Identities=31% Similarity=0.620 Sum_probs=65.0
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++||++|++|++|+++. .+|.+.+|+.++|+.||+||.|.++.+++|+|+++|++|++|+||||+
T Consensus 352 lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl 420 (503)
T PLN02394 352 LPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFL 420 (503)
T ss_pred CHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccC
Confidence 68999999999999999997 578888999999999999999999999999999999999999999995
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=99.95 E-value=1.1e-27 Score=140.62 Aligned_cols=68 Identities=35% Similarity=0.690 Sum_probs=65.6
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++|||+|+||++|+++.+.|.+.+|..++|+.||+||.|.++.+.+|+|+++|++|++|+||||+
T Consensus 449 LPYL~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl 516 (633)
T PLN02738 449 LKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWP 516 (633)
T ss_pred CHHHHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCC
Confidence 79999999999999999998779899999999999999999999999999999999999999999995
No 12
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.95 E-value=8.6e-28 Score=134.31 Aligned_cols=68 Identities=46% Similarity=0.938 Sum_probs=63.8
Q ss_pred ChhHHHHHHhhhcCCCCCc-ccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVP-FIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~-~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++||++|++|++|+++ .++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+|+||+
T Consensus 321 l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~ 389 (463)
T PF00067_consen 321 LPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFL 389 (463)
T ss_dssp GHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGB
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999 6889999999999999999999999999999999999999999999995
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=99.94 E-value=2.9e-27 Score=136.22 Aligned_cols=68 Identities=31% Similarity=0.566 Sum_probs=65.3
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++||++|++|++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 366 lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~ 434 (519)
T PLN00168 366 MPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFL 434 (519)
T ss_pred ChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCC
Confidence 68999999999999999987 589999999999999999999999999999999999999999999995
No 14
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.94 E-value=3.4e-27 Score=135.70 Aligned_cols=68 Identities=32% Similarity=0.657 Sum_probs=65.6
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|+++|++|++|++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 348 lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl 416 (504)
T PLN00110 348 LPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFL 416 (504)
T ss_pred ChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCccccc
Confidence 68999999999999999987 789999999999999999999999999999999999999999999995
No 15
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.94 E-value=3.7e-27 Score=135.50 Aligned_cols=68 Identities=24% Similarity=0.406 Sum_probs=62.6
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCee-ecCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQ-FGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~-~~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|+|++|+++|+||++|+++.+.|.+.+|.. ++|+.||+|+.|.++.+++|+|+++| ++|++|+||||+
T Consensus 354 L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl 423 (500)
T PLN02169 354 LVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWI 423 (500)
T ss_pred CHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccC
Confidence 689999999999999999987777666655 58999999999999999999999999 899999999995
No 16
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.94 E-value=4.3e-27 Score=134.82 Aligned_cols=68 Identities=40% Similarity=0.641 Sum_probs=64.9
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++. +.|.+.+|+.++|+.||+||.|.++.+.+|+|+++| ++|++|+||||+
T Consensus 347 l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l 416 (499)
T PLN03234 347 LPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFM 416 (499)
T ss_pred ChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhc
Confidence 68999999999999999997 578999999999999999999999999999999999 899999999995
No 17
>PLN02966 cytochrome P450 83A1
Probab=99.94 E-value=2.7e-27 Score=135.91 Aligned_cols=68 Identities=35% Similarity=0.710 Sum_probs=65.4
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++. +.|.+.+|+.++|+.||+||.|.++.+++|+|+++| ++|++|+||||+
T Consensus 350 lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl 419 (502)
T PLN02966 350 LPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFL 419 (502)
T ss_pred CcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhc
Confidence 68999999999999999997 689999999999999999999999999999999999 999999999995
No 18
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.94 E-value=7.7e-27 Score=133.10 Aligned_cols=68 Identities=31% Similarity=0.534 Sum_probs=65.3
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++...|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 326 l~yl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl 393 (463)
T PLN02196 326 MPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFE 393 (463)
T ss_pred ChHHHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhc
Confidence 57999999999999999988779999999999999999999999999999999999999999999995
No 19
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.94 E-value=1.6e-26 Score=133.15 Aligned_cols=68 Identities=37% Similarity=0.775 Sum_probs=65.6
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++|+++|++|++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 356 lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl 424 (517)
T PLN02687 356 LTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFL 424 (517)
T ss_pred CHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcC
Confidence 68999999999999999996 789999999999999999999999999999999999999999999995
No 20
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.94 E-value=5e-27 Score=135.05 Aligned_cols=68 Identities=31% Similarity=0.517 Sum_probs=62.5
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeee-cCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQF-GQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~-~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|||++|||+|+||++|+++...|.+.+|..+ +|+.||+|+.|.++.+++|+|+++| ++|++|+||||+
T Consensus 371 Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl 440 (516)
T PLN03195 371 LQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWI 440 (516)
T ss_pred CHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccC
Confidence 6899999999999999999877767666555 8999999999999999999999999 999999999995
No 21
>PLN02655 ent-kaurene oxidase
Probab=99.94 E-value=1.5e-26 Score=131.93 Aligned_cols=68 Identities=32% Similarity=0.645 Sum_probs=65.1
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++++++|++|++|+++. .+|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 320 l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~ 388 (466)
T PLN02655 320 LPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFL 388 (466)
T ss_pred ChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccC
Confidence 68999999999999999987 479999999999999999999999999999999999999999999995
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=99.93 E-value=2.7e-26 Score=132.83 Aligned_cols=68 Identities=28% Similarity=0.610 Sum_probs=65.1
Q ss_pred ChhHHHHHHhhhcCCCCCccc-ceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFI-GRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~-~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++||++|++|++|+++.. .|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 373 lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl 441 (534)
T PLN03018 373 LNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHL 441 (534)
T ss_pred CHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCC
Confidence 689999999999999999974 68899999999999999999999999999999999999999999995
No 23
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.93 E-value=1.9e-26 Score=131.70 Aligned_cols=68 Identities=31% Similarity=0.515 Sum_probs=65.4
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++++++|++|++|+++...|.+.+|+.++|+.||+|+.|.++.+++|+|+++|+||++|+||||+
T Consensus 350 lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~ 417 (490)
T PLN02302 350 MEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWD 417 (490)
T ss_pred ChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcC
Confidence 68999999999999999988789999999999999999999999999999999999999999999995
No 24
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.93 E-value=1.6e-26 Score=132.94 Aligned_cols=68 Identities=29% Similarity=0.512 Sum_probs=64.3
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeee-cCEEeCCCCEEEEchhHHhcCCCCC-CCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQF-GQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~-~~~~ip~g~~v~~~~~~~~~~~~~~-~~p~~f~p~rf~ 68 (68)
|||++||++|++|++|+++...|.+.+|..+ +|+.||+|+.|.++.+++|+|+++| ++|++|+||||+
T Consensus 353 LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl 422 (502)
T PLN02426 353 MHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWL 422 (502)
T ss_pred ChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccC
Confidence 6899999999999999999877888888777 8999999999999999999999999 999999999995
No 25
>KOG0157|consensus
Probab=99.93 E-value=1.4e-26 Score=133.15 Aligned_cols=68 Identities=43% Similarity=0.829 Sum_probs=65.5
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeec-CEEeCCCCEEEEchhHHhcCCCCCC-CCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFG-QYLVPAGTYINVEIFHVHRCPDQFP-EPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~-~~~ip~g~~v~~~~~~~~~~~~~~~-~p~~f~p~rf~ 68 (68)
|+|+++||+|+||+||+++...|.+.+|+.++ |+.||+|+.|.++.+++|||+++|+ ||++|+||||.
T Consensus 351 m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~ 420 (497)
T KOG0157|consen 351 MKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFL 420 (497)
T ss_pred hHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccC
Confidence 68999999999999999999999999999995 8999999999999999999999997 99999999995
No 26
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.93 E-value=3.6e-26 Score=131.43 Aligned_cols=68 Identities=25% Similarity=0.508 Sum_probs=65.0
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 355 L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~ 423 (514)
T PLN03112 355 LNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHW 423 (514)
T ss_pred CcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccC
Confidence 68999999999999999996 689999999999999999999999999999999999999999999973
No 27
>KOG0159|consensus
Probab=99.93 E-value=1.6e-26 Score=131.92 Aligned_cols=68 Identities=44% Similarity=0.762 Sum_probs=66.4
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
||||+|||||++|+||.++...|...+|..++||.|||||.|.++.+.+.+|+++|++|++|+||||+
T Consensus 376 ~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL 443 (519)
T KOG0159|consen 376 MPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWL 443 (519)
T ss_pred CHHHHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999996
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.93 E-value=7.9e-26 Score=129.43 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=65.4
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++|+++|++|++|+++.+.|.+.+|+.++|+.||+|+.|.++.+.+|+|+++|++|++|+||||+
T Consensus 329 lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl 396 (472)
T PLN02987 329 MPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQ 396 (472)
T ss_pred ChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCC
Confidence 68999999999999999987789999999999999999999999999999999999999999999995
No 29
>PLN02936 epsilon-ring hydroxylase
Probab=99.92 E-value=1.8e-25 Score=128.18 Aligned_cols=68 Identities=38% Similarity=0.710 Sum_probs=62.4
Q ss_pred ChhHHHHHHhhhcCCCCCcc-cceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~-~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|||++||++|++|++|+++. ..|.+..++.++|+.||+|+.|.++.+++|+|+++|++|++|+||||+
T Consensus 336 lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl 404 (489)
T PLN02936 336 LKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFD 404 (489)
T ss_pred CHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccC
Confidence 68999999999999999886 455556777789999999999999999999999999999999999995
No 30
>PLN02648 allene oxide synthase
Probab=99.92 E-value=9.1e-25 Score=125.40 Aligned_cols=68 Identities=29% Similarity=0.390 Sum_probs=64.6
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeec----CEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFG----QYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~----~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+|++++++|++|++|+++...|.+.+|+.+. |+.||+|+.|.++.+.+|+|+++|++|++|+|+||+
T Consensus 333 l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~ 404 (480)
T PLN02648 333 MPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFM 404 (480)
T ss_pred CHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCC
Confidence 68999999999999999998788899999996 799999999999999999999999999999999995
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=1.3e-23 Score=118.83 Aligned_cols=67 Identities=42% Similarity=0.819 Sum_probs=64.2
Q ss_pred hhHHHHHHhhhcCCCCCcccceeeCCCeeecCEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 2 KYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 2 ~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
+|+.++++|+||++|+++.+.|.+.+|+.++|+.||+|+.|.++++++|+|+++|++|++|+|+||.
T Consensus 280 ~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~ 346 (411)
T COG2124 280 PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN 346 (411)
T ss_pred HHHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC
Confidence 4788999999999999999889999999999999999999999999999999999999999999984
No 32
>KOG0684|consensus
Probab=99.85 E-value=9.7e-22 Score=111.24 Aligned_cols=68 Identities=35% Similarity=0.678 Sum_probs=64.7
Q ss_pred ChhHHHHHHhhhcCCCCCcccceeeCCCeeecC----EEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQ----YLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 1 l~~l~~~i~E~lRl~~~~~~~~~~~~~~~~~~~----~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
|+.++.||+|++||+++.+.+.|.+.+|..+.+ |.||+|..|.++....|+||++|++|+.|+|+||+
T Consensus 333 lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~ 404 (486)
T KOG0684|consen 333 LPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFL 404 (486)
T ss_pred chHHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhcc
Confidence 578999999999999999999999999998876 99999999999999999999999999999999995
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=88.60 E-value=0.45 Score=20.70 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=4.5
Q ss_pred CCCCCC
Q psy16905 63 NPDNKR 68 (68)
Q Consensus 63 ~p~rf~ 68 (68)
||||||
T Consensus 44 DPERWL 49 (59)
T PF08492_consen 44 DPERWL 49 (59)
T ss_pred CccccC
Confidence 778876
No 34
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=85.25 E-value=1.7 Score=23.53 Aligned_cols=21 Identities=48% Similarity=0.722 Sum_probs=17.0
Q ss_pred eeCCCeeecCEEeCCCCEEEE
Q psy16905 24 VLSEDTQFGQYLVPAGTYINV 44 (68)
Q Consensus 24 ~~~~~~~~~~~~ip~g~~v~~ 44 (68)
+..+|+.++|..||+|+.+.-
T Consensus 74 RLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 74 RLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EEcCceEECCEEeCCCCEEEE
Confidence 456788889999999997654
No 35
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=83.30 E-value=0.51 Score=17.54 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=3.6
Q ss_pred CCCCCC
Q psy16905 62 FNPDNK 67 (68)
Q Consensus 62 f~p~rf 67 (68)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 36
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=82.27 E-value=0.59 Score=16.77 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=3.4
Q ss_pred CCCCCC
Q psy16905 62 FNPDNK 67 (68)
Q Consensus 62 f~p~rf 67 (68)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 456665
No 37
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=75.04 E-value=1.9 Score=19.19 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.7
Q ss_pred hHHHHHHhhhcCC
Q psy16905 3 YLERVIKESLRLF 15 (68)
Q Consensus 3 ~l~~~i~E~lRl~ 15 (68)
+++.+|+|++|+.
T Consensus 42 fv~~~IkEA~RFk 54 (65)
T PF15300_consen 42 FVEMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 5778999999974
No 38
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=71.65 E-value=0.77 Score=16.64 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=3.4
Q ss_pred CCCCCC
Q psy16905 62 FNPDNK 67 (68)
Q Consensus 62 f~p~rf 67 (68)
++||||
T Consensus 19 l~PErF 24 (26)
T TIGR02115 19 LRPERF 24 (26)
T ss_pred hCHHhc
Confidence 456665
No 39
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=66.79 E-value=11 Score=19.50 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=16.7
Q ss_pred eeCCCeeecCEEeCCCCEEEE
Q psy16905 24 VLSEDTQFGQYLVPAGTYINV 44 (68)
Q Consensus 24 ~~~~~~~~~~~~ip~g~~v~~ 44 (68)
...+|+.++|..+|+|+.-+.
T Consensus 51 ~f~~dv~igGk~l~AG~Ysl~ 71 (145)
T PF11138_consen 51 TFSKDVTIGGKKLKAGTYSLF 71 (145)
T ss_pred EECCCeEECCEEcCCeeEEEE
Confidence 446789999999999986444
No 40
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=66.34 E-value=4.4 Score=22.25 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=16.0
Q ss_pred HhcCCCCCCCCCCCCCCC
Q psy16905 49 VHRCPDQFPEPNSFNPDN 66 (68)
Q Consensus 49 ~~~~~~~~~~p~~f~p~r 66 (68)
-+.|+..|.|.+.|+|.|
T Consensus 194 ~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 194 DNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCcccccCccccCCCC
Confidence 378999999999999987
No 41
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=66.13 E-value=9.8 Score=23.07 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=16.8
Q ss_pred eeCCCeeecCEEeCCCCEEEEc
Q psy16905 24 VLSEDTQFGQYLVPAGTYINVE 45 (68)
Q Consensus 24 ~~~~~~~~~~~~ip~g~~v~~~ 45 (68)
+..+|+.++|..||+||.+.-.
T Consensus 277 RLle~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 277 RLLEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred EEcCceeeCCEEecCCCEEEEE
Confidence 3456788899999999976543
No 42
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=53.42 E-value=26 Score=19.39 Aligned_cols=34 Identities=12% Similarity=0.043 Sum_probs=24.5
Q ss_pred CEEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCCCC
Q psy16905 33 QYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 33 ~~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~rf~ 68 (68)
.+.+.+|..++++.+.+.+...-|.+.. ...||+
T Consensus 221 ~~~l~~Gdivi~DN~r~lHgR~~f~~~~--~~~R~L 254 (262)
T cd00250 221 TVKLEPGDLLIFDNRRVLHGRTAFSPRY--GGDRWL 254 (262)
T ss_pred EEEcCCCCEEEEechhhhcCCCCCCCCC--CCceEE
Confidence 4567899999999999988877775432 334653
No 43
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=52.02 E-value=15 Score=18.47 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=16.5
Q ss_pred eeCCCeeecCEEeCCCCEEEE
Q psy16905 24 VLSEDTQFGQYLVPAGTYINV 44 (68)
Q Consensus 24 ~~~~~~~~~~~~ip~g~~v~~ 44 (68)
.+..|..+.|-.+|+|+.+..
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred ecCCCcccCCeeecceEEEEE
Confidence 445688888999999998743
No 44
>PRK06789 flagellar motor switch protein; Validated
Probab=49.84 E-value=27 Score=15.96 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHhhhcCCCCCcc-cceeeCCC--eeecCEEeCCCCEEEEc
Q psy16905 7 VIKESLRLFPSVPF-IGRVLSED--TQFGQYLVPAGTYINVE 45 (68)
Q Consensus 7 ~i~E~lRl~~~~~~-~~~~~~~~--~~~~~~~ip~g~~v~~~ 45 (68)
-++|.+.+.+.... +-+.+..+ ..+.|..+.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 36778888776554 66666554 45579999999887664
No 45
>PRK05933 type III secretion system protein; Validated
Probab=48.82 E-value=33 Score=20.47 Aligned_cols=41 Identities=22% Similarity=0.189 Sum_probs=30.0
Q ss_pred HHHHHhhhcCCCCCcc-cceee-CC--CeeecCEEeCCCCEEEEc
Q psy16905 5 ERVIKESLRLFPSVPF-IGRVL-SE--DTQFGQYLVPAGTYINVE 45 (68)
Q Consensus 5 ~~~i~E~lRl~~~~~~-~~~~~-~~--~~~~~~~~ip~g~~v~~~ 45 (68)
...|+|.++|.+.... +-+.+ .+ |+.++|..|.+|..|.++
T Consensus 318 ~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd 362 (372)
T PRK05933 318 SLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG 362 (372)
T ss_pred cccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence 4568899999877654 54554 23 567789999999988775
No 46
>smart00426 TEA TEA domain.
Probab=47.59 E-value=19 Score=16.22 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.0
Q ss_pred hhHHHHHHhhhcCCCCCcc
Q psy16905 2 KYLERVIKESLRLFPSVPF 20 (68)
Q Consensus 2 ~~l~~~i~E~lRl~~~~~~ 20 (68)
+.++..+.|+|+++++...
T Consensus 8 ~~lE~Af~~aL~~~~~~g~ 26 (68)
T smart00426 8 PDIEQAFQEALAIYPPCGR 26 (68)
T ss_pred HHHHHHHHHHHHHcCccCc
Confidence 4678889999999987553
No 47
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=43.17 E-value=4.9 Score=18.41 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=12.6
Q ss_pred cCCCCCCCCCCCCCCCCC
Q psy16905 51 RCPDQFPEPNSFNPDNKR 68 (68)
Q Consensus 51 ~~~~~~~~p~~f~p~rf~ 68 (68)
.|+.+-++.+.|+.++|+
T Consensus 23 ~d~~ldp~s~~Fdl~~~l 40 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWL 40 (85)
T ss_pred CCCCCCCCCccccHHHHH
Confidence 456666777788888774
No 48
>PF11059 DUF2860: Protein of unknown function (DUF2860); InterPro: IPR016896 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.28 E-value=34 Score=19.93 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=24.9
Q ss_pred EEeCCCCEEEEchhHHhcCCCCCCCCCCCCCCC
Q psy16905 34 YLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDN 66 (68)
Q Consensus 34 ~~ip~g~~v~~~~~~~~~~~~~~~~p~~f~p~r 66 (68)
+.+..|+.+.++....-...+.|.||..-+-.|
T Consensus 81 ~~l~~~~~~~~s~lpti~~~e~W~DPY~~~~~R 113 (297)
T PF11059_consen 81 QQLGSGTVVDFSYLPTIMSGEVWEDPYLTGQAR 113 (297)
T ss_pred eeccCCcEEEEEEeccCCCCccccCccccCCcc
Confidence 577888888888777667799999996654433
No 49
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=40.18 E-value=42 Score=16.61 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=18.7
Q ss_pred cCEEeCCCCEEEEchhHHhcCCCC
Q psy16905 32 GQYLVPAGTYINVEIFHVHRCPDQ 55 (68)
Q Consensus 32 ~~~~ip~g~~v~~~~~~~~~~~~~ 55 (68)
....+|++|.+..+.+.-|.-..+
T Consensus 60 k~I~iP~~tIv~p~~~~rha~G~v 83 (112)
T PF01629_consen 60 KKIEIPPNTIVMPCAYMRHALGSV 83 (112)
T ss_pred EEEecCCCCEEEEchHhhccCccE
Confidence 457899999999998887765443
No 50
>KOG3768|consensus
Probab=38.71 E-value=20 Score=23.23 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q psy16905 54 DQFPEPNSFNPDN 66 (68)
Q Consensus 54 ~~~~~p~~f~p~r 66 (68)
-+||-|+.|+|+|
T Consensus 284 ghWPiPEsfwPd~ 296 (888)
T KOG3768|consen 284 GHWPIPESFWPDR 296 (888)
T ss_pred ccCCCCcccCCcc
Confidence 3799999999987
No 51
>PF08105 Antimicrobial10: Metchnikowin family; InterPro: IPR012513 This family consists of the metchnikowin family of antimicrobial peptides from Drosophila. metchnikowin is a proline-rich peptide whose expression is immune-inducible. Induction of the metchnikowin gene expression can be mediated either by the TOLL pathway or by the imd gene product. The metchnikowin peptide is unique among the Drosophila antimicrobial peptides in that it is active against both bacteria and fungi [].
Probab=38.12 E-value=37 Score=14.25 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=12.1
Q ss_pred hHHhcCCCCC-CCCCCCCCC
Q psy16905 47 FHVHRCPDQF-PEPNSFNPD 65 (68)
Q Consensus 47 ~~~~~~~~~~-~~p~~f~p~ 65 (68)
.+.+++..+| ..|.-|+|.
T Consensus 25 e~~r~qgpiFDTRPSPFNPN 44 (52)
T PF08105_consen 25 EAHRRQGPIFDTRPSPFNPN 44 (52)
T ss_pred chhhccCCCCCCCCCCCCCC
Confidence 3455667777 466777764
No 52
>PF09556 RE_HaeIII: HaeIII restriction endonuclease; InterPro: IPR019059 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the restriction endonuclease HaeIII, which recognises and cleaves the double-stranded sequence GG^CC.
Probab=34.19 E-value=22 Score=20.62 Aligned_cols=14 Identities=36% Similarity=0.505 Sum_probs=12.9
Q ss_pred hhHHHHHHhhhcCC
Q psy16905 2 KYLERVIKESLRLF 15 (68)
Q Consensus 2 ~~l~~~i~E~lRl~ 15 (68)
|+|+|++.|..|++
T Consensus 173 PLL~AF~~Ei~r~~ 186 (300)
T PF09556_consen 173 PLLKAFIDEINRLY 186 (300)
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999999996
No 53
>PF01109 GM_CSF: Granulocyte-macrophage colony-stimulating factor; InterPro: IPR000773 Granulocyte-macrophage colony-stimulating factor (GMCSF) is a cytokine that acts in hematopoiesis to stimulate growth and differentiation of hematopoietic precursor cells from various lineages including granulocytes, macrophages, eosinophils and erythrocytes [, ]. GMCSF is a glycoprotein of ~120 residues that contains 4 conserved cysteines that participate in disulphide bond formation. The crystal structure of recombinant human GMCSF has been determined []. There are two molecules in the asymmetric unit, which are related by an approximate non-crystallographic 2-fold axis. The overall structure, which is highly compact and globular with a predominantly hydrophobic core, is characterised by a 4-alpha-helix bundle. The helices are arranged in a left-handed anti-parallel fashion, with two overhand connections. Within the connections is a two-stranded anti-parallel beta-sheet. The tertiary structure has a topology similar to that of Sus scrofa (pig) growth factor and interferon-beta. Most of the proposed critical regions for receptor binding are located on a continuous surface at one end of the molecule that includes the C terminus [].; GO: 0005129 granulocyte macrophage colony-stimulating factor receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3CXE_B 1CSG_A 2GMF_B.
Probab=32.47 E-value=24 Score=17.69 Aligned_cols=13 Identities=38% Similarity=0.577 Sum_probs=9.0
Q ss_pred hHHHHHHhhhcCCC
Q psy16905 3 YLERVIKESLRLFP 16 (68)
Q Consensus 3 ~l~~~i~E~lRl~~ 16 (68)
.++| |+|+++|-.
T Consensus 15 hvda-ikeal~ll~ 27 (122)
T PF01109_consen 15 HVDA-IKEALSLLN 27 (122)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHHh
Confidence 3455 899998743
No 54
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=31.66 E-value=32 Score=15.51 Aligned_cols=12 Identities=50% Similarity=0.739 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q psy16905 56 FPEPNSFNPDNK 67 (68)
Q Consensus 56 ~~~p~~f~p~rf 67 (68)
-.+|..||||=|
T Consensus 30 s~dp~~fn~~If 41 (69)
T PF11297_consen 30 SDDPNVFNPDIF 41 (69)
T ss_pred CCCccccCcccc
Confidence 345666666633
No 55
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=31.27 E-value=27 Score=17.28 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=9.5
Q ss_pred hHHHHHHhhhcCCCC
Q psy16905 3 YLERVIKESLRLFPS 17 (68)
Q Consensus 3 ~l~~~i~E~lRl~~~ 17 (68)
.++| |+|+++|-.-
T Consensus 15 HVdA-IkEAlsLLn~ 28 (121)
T smart00040 15 HVDA-IKEALSLLND 28 (121)
T ss_pred HHHH-HHHHHHHHhc
Confidence 3555 8999887543
No 56
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=25.50 E-value=74 Score=13.80 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=7.3
Q ss_pred cCEEeCCCCEEEE
Q psy16905 32 GQYLVPAGTYINV 44 (68)
Q Consensus 32 ~~~~ip~g~~v~~ 44 (68)
.|..+|.|+.|.-
T Consensus 7 ~G~~lPfGA~v~~ 19 (68)
T PF13953_consen 7 DGKPLPFGASVSD 19 (68)
T ss_dssp TSEE--TT-EEEE
T ss_pred CCCcCCCCcEEEc
Confidence 4778888988864
No 57
>PF05489 Phage_tail_X: Phage Tail Protein X; InterPro: IPR008861 This entry is represented by Bacteriophage P2, GpX. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family is found in a family of phage tail proteins. Sequence analysis suggests that they are related to IPR002482 from INTERPRO which suggests a general peptidoglycan binding function.
Probab=24.52 E-value=51 Score=14.23 Aligned_cols=13 Identities=38% Similarity=0.513 Sum_probs=9.8
Q ss_pred CEEeCCCCEEEEc
Q psy16905 33 QYLVPAGTYINVE 45 (68)
Q Consensus 33 ~~~ip~g~~v~~~ 45 (68)
|-.+|+|+.|.++
T Consensus 40 ~~~lpaG~~I~lP 52 (60)
T PF05489_consen 40 GPVLPAGTVIILP 52 (60)
T ss_pred CCcCCCCCEEECC
Confidence 4578899988765
No 58
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=24.41 E-value=73 Score=16.71 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=8.4
Q ss_pred EEeCCCCEEEEch
Q psy16905 34 YLVPAGTYINVEI 46 (68)
Q Consensus 34 ~~ip~g~~v~~~~ 46 (68)
..||+|+.|.++.
T Consensus 123 i~iPkGs~I~fst 135 (152)
T PF06249_consen 123 IFIPKGSTITFST 135 (152)
T ss_dssp EEE-TT-EEEEEE
T ss_pred EEECCCCEEEEec
Confidence 5789999888763
No 59
>COG5138 Uncharacterized conserved protein [Function unknown]
Probab=23.47 E-value=70 Score=16.79 Aligned_cols=19 Identities=5% Similarity=0.225 Sum_probs=15.6
Q ss_pred cCEEeCCCCEEEEchhHHh
Q psy16905 32 GQYLVPAGTYINVEIFHVH 50 (68)
Q Consensus 32 ~~~~ip~g~~v~~~~~~~~ 50 (68)
.|..+|+|+.|.++.|.+.
T Consensus 33 ~gr~~p~n~kvelP~wLa~ 51 (168)
T COG5138 33 RGRILPENRKVELPYWLAS 51 (168)
T ss_pred CCcccCCCCeeechHHHHH
Confidence 4788999999999888554
No 60
>KOG3841|consensus
Probab=23.33 E-value=65 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.569 Sum_probs=13.0
Q ss_pred hHHHHHHhhhcCCCCCc
Q psy16905 3 YLERVIKESLRLFPSVP 19 (68)
Q Consensus 3 ~l~~~i~E~lRl~~~~~ 19 (68)
-++..+.|+|++||+..
T Consensus 82 dIEqsFqEALaiyppcG 98 (455)
T KOG3841|consen 82 DIEQSFQEALAIYPPCG 98 (455)
T ss_pred hHHHHHHHHHhhcCCCC
Confidence 45677889999998754
No 61
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=22.79 E-value=37 Score=13.75 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=3.5
Q ss_pred CCCEEEE
Q psy16905 38 AGTYINV 44 (68)
Q Consensus 38 ~g~~v~~ 44 (68)
.+..|..
T Consensus 17 d~k~v~~ 23 (49)
T PF13765_consen 17 DGKSVRY 23 (49)
T ss_dssp TSSEEEE
T ss_pred CCeEEEE
Confidence 4555544
No 62
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.53 E-value=21 Score=16.21 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.9
Q ss_pred CEEeCCCCEEEEchhHHhcC
Q psy16905 33 QYLVPAGTYINVEIFHVHRC 52 (68)
Q Consensus 33 ~~~ip~g~~v~~~~~~~~~~ 52 (68)
.+.+|+|+.+.-....+|.|
T Consensus 24 ~~~l~~GaTv~D~A~~IHtd 43 (76)
T cd01669 24 AFLLPKGSTARDLAYAIHTD 43 (76)
T ss_pred eEEECCCCCHHHHHHHHHHH
Confidence 46789999887767777764
No 63
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=22.31 E-value=68 Score=14.62 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.4
Q ss_pred cCEEeCCCCEEEEc
Q psy16905 32 GQYLVPAGTYINVE 45 (68)
Q Consensus 32 ~~~~ip~g~~v~~~ 45 (68)
.+..||+++.|++.
T Consensus 58 d~~~IprnssVivr 71 (74)
T PF08783_consen 58 DNELIPRNSSVIVR 71 (74)
T ss_dssp TT-EEETT--EEEE
T ss_pred CCeEEeCCCEEEEE
Confidence 36789999988763
No 64
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.15 E-value=92 Score=15.53 Aligned_cols=19 Identities=37% Similarity=0.503 Sum_probs=15.1
Q ss_pred hhHHHHHHhhhcCCCCCcc
Q psy16905 2 KYLERVIKESLRLFPSVPF 20 (68)
Q Consensus 2 ~~l~~~i~E~lRl~~~~~~ 20 (68)
..+..+|.|+.++-|.+-.
T Consensus 40 ~~le~aI~esi~~QP~v~d 58 (116)
T COG2098 40 ESLEKAIEESIKVQPFVED 58 (116)
T ss_pred HHHHHHHHHHHhcCCceee
Confidence 3578899999999887543
No 65
>KOG2882|consensus
Probab=21.81 E-value=18 Score=21.10 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=23.6
Q ss_pred cCEEeC-CCCEEEEchhHHhcCCCCCCCCCC
Q psy16905 32 GQYLVP-AGTYINVEIFHVHRCPDQFPEPNS 61 (68)
Q Consensus 32 ~~~~ip-~g~~v~~~~~~~~~~~~~~~~p~~ 61 (68)
.|..+| .|..+.....+.+|+|.+...|..
T Consensus 197 ~~~~ipG~G~~v~av~~~t~R~P~v~GKP~~ 227 (306)
T KOG2882|consen 197 PGVEIPGAGSFVAAVKFATGRQPIVLGKPST 227 (306)
T ss_pred CCeeccCCccHHHHHHHHhcCCCeecCCCCH
Confidence 477777 788888888899999988866643
No 66
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=21.42 E-value=42 Score=14.63 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q psy16905 56 FPEPNSFNPDN 66 (68)
Q Consensus 56 ~~~p~~f~p~r 66 (68)
.+.|.+|.+|+
T Consensus 37 L~ap~ef~~es 47 (65)
T PRK13724 37 LPAPKEFSSES 47 (65)
T ss_pred ecCccccCccc
Confidence 35666676654
No 67
>PRK08158 type III secretion system protein SpaO; Validated
Probab=21.42 E-value=1.7e+02 Score=17.36 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHhhhcCCCCCcc-cceeeCCC--eeecCEEeCCCCEEEEc
Q psy16905 6 RVIKESLRLFPSVPF-IGRVLSED--TQFGQYLVPAGTYINVE 45 (68)
Q Consensus 6 ~~i~E~lRl~~~~~~-~~~~~~~~--~~~~~~~ip~g~~v~~~ 45 (68)
..++|.+++.+.... +.+.+.+. +.++|..+-+|..|.+.
T Consensus 243 ~tl~eL~~L~~GsVl~L~~~~~~~V~I~vNg~lva~GELV~v~ 285 (303)
T PRK08158 243 VTLAELEELCQQQLLSLPTNAELNVEIRANGALLGNGELVQMD 285 (303)
T ss_pred eeHHHHhhcCCCCEEECCCCCCCceEEEECCEEEEEEEEEEEC
Confidence 346788888877664 55555544 45578888888877664
No 68
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=21.27 E-value=78 Score=18.29 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=26.4
Q ss_pred hHHHHHHhhhcCCCCCcccceeeCCC-eeecCEEeCCC
Q psy16905 3 YLERVIKESLRLFPSVPFIGRVLSED-TQFGQYLVPAG 39 (68)
Q Consensus 3 ~l~~~i~E~lRl~~~~~~~~~~~~~~-~~~~~~~ip~g 39 (68)
|...+..|..|+--....+.|.+..+ ....|..+|+|
T Consensus 223 YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~g 260 (287)
T COG2521 223 YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKG 260 (287)
T ss_pred hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHH
Confidence 56678888888877677677877554 46667777765
No 69
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=21.26 E-value=41 Score=14.50 Aligned_cols=11 Identities=27% Similarity=0.911 Sum_probs=6.8
Q ss_pred CCCCCCCCCCC
Q psy16905 56 FPEPNSFNPDN 66 (68)
Q Consensus 56 ~~~p~~f~p~r 66 (68)
.+.|.+|.+|+
T Consensus 37 Lpa~~ef~~es 47 (61)
T PF10894_consen 37 LPAPKEFSSES 47 (61)
T ss_pred ecCccccCccc
Confidence 35666676664
No 70
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=20.61 E-value=53 Score=12.97 Aligned_cols=13 Identities=15% Similarity=0.273 Sum_probs=9.4
Q ss_pred HHHHHhhhcCCCC
Q psy16905 5 ERVIKESLRLFPS 17 (68)
Q Consensus 5 ~~~i~E~lRl~~~ 17 (68)
..|+.|+.|+-..
T Consensus 8 ~~C~~Ev~~fLs~ 20 (45)
T smart00511 8 RECANEVSRFLSQ 20 (45)
T ss_pred HHHHHHHHHHHhc
Confidence 4688899887443
No 71
>COG5620 Uncharacterized conserved protein [Function unknown]
Probab=20.52 E-value=30 Score=18.70 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=10.6
Q ss_pred hcCCCCC-CCCCCCCC
Q psy16905 50 HRCPDQF-PEPNSFNP 64 (68)
Q Consensus 50 ~~~~~~~-~~p~~f~p 64 (68)
..|..+| -+|+.|+|
T Consensus 58 ~~dg~~wi~~P~~f~p 73 (200)
T COG5620 58 WSDGQYWICDPSIFQP 73 (200)
T ss_pred eccceEEecCccccch
Confidence 3567777 67888876
No 72
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=20.48 E-value=57 Score=10.62 Aligned_cols=9 Identities=33% Similarity=0.778 Sum_probs=5.3
Q ss_pred CCCCCCCCC
Q psy16905 57 PEPNSFNPD 65 (68)
Q Consensus 57 ~~p~~f~p~ 65 (68)
+++.+|.|.
T Consensus 8 p~A~eFvP~ 16 (18)
T PF07145_consen 8 PNAPEFVPS 16 (18)
T ss_dssp TTSSSS-TT
T ss_pred CCCccccCC
Confidence 666777763
No 73
>KOG2376|consensus
Probab=20.36 E-value=60 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=5.9
Q ss_pred cCCCCCCCCCCCCC
Q psy16905 51 RCPDQFPEPNSFNP 64 (68)
Q Consensus 51 ~~~~~~~~p~~f~p 64 (68)
+|+..-|||+.|-|
T Consensus 575 yn~~~tPDPERWLP 588 (652)
T KOG2376|consen 575 YNPKVTPDPERWLP 588 (652)
T ss_pred CCCCCCCChhhccc
Confidence 34444444443333
No 74
>PF11649 T4_neck-protein: Virus neck protein; InterPro: IPR021674 This family of protein is represented by bacteriophage T4 Gp14, a major component of the neck along with Gp13. When added to completed heads, Gp13 and Gp14 structural proteins activate the heads for tail joining in vitro complementation mixtures. Gp14 is rich is beta-sheets. The formation of the neck to the head of the bacteriophage is crucial for the tail attachment [].
Probab=20.03 E-value=1.2e+02 Score=17.20 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=21.7
Q ss_pred hHHHHHHhhhcCCCCCcc-ccee-eCCCeeec
Q psy16905 3 YLERVIKESLRLFPSVPF-IGRV-LSEDTQFG 32 (68)
Q Consensus 3 ~l~~~i~E~lRl~~~~~~-~~~~-~~~~~~~~ 32 (68)
+.++.+.|+++++..-.. ++|. +..|..++
T Consensus 23 L~~~LV~EsIqm~G~dvyYipRe~v~~D~if~ 54 (230)
T PF11649_consen 23 LIDDLVAESIQMYGVDVYYIPREYVNRDLIFG 54 (230)
T ss_pred HHHHHHHHHHHccCceEEEeeeEeeccccccc
Confidence 467899999999987554 7774 45666554
Done!