RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16905
(68 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 80.4 bits (199), Expect = 8e-20
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
M YL+ VIKE+LRL P VP + R +++DT YL+P GT + V ++ +HR P+ FP P
Sbjct: 320 MPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYLIPKGTLVIVNLYALHRDPEVFPNP 379
Query: 60 NSFNPDN 66
F+P+
Sbjct: 380 EEFDPER 386
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 74.0 bits (182), Expect = 1e-17
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 2 KYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNS 61
LE V++E+LRL+P VP RV +ED + G Y +PAGT + + I +R P+ FP+P+
Sbjct: 280 PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDE 339
Query: 62 FNPD 65
F+P+
Sbjct: 340 FDPE 343
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 57.6 bits (139), Expect = 9e-12
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
+KY RVI ESLRL+P P + R E+ G Y + G I + ++++HR P + +
Sbjct: 449 LKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAE 508
Query: 61 SFNPD 65
FNP+
Sbjct: 509 KFNPE 513
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 56.0 bits (135), Expect = 3e-11
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ YL+ VIKE+ RL PS P + R+ +E+ + Y +P G + V ++ + R P+Q+P+P
Sbjct: 356 LTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDP 415
Query: 60 NSFNPD 65
F PD
Sbjct: 416 LEFRPD 421
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 54.4 bits (131), Expect = 1e-10
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 1 MKYLERVIKESLRLFPSVP-FIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCP------ 53
+KYL R I ES+RL+P P I R ED G Y V AG I + ++++HR P
Sbjct: 336 LKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERA 395
Query: 54 DQFPEPNSFNPDN 66
++F P F+ D
Sbjct: 396 EEF-VPERFDLDG 407
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 54.4 bits (131), Expect = 1e-10
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPFI-GRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ YL V E+LR + VP + R + EDT G Y +PAGT I + I+ + ++ P
Sbjct: 320 LPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENP 379
Query: 60 NSFNPD 65
++P+
Sbjct: 380 EEWDPE 385
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 52.4 bits (126), Expect = 6e-10
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M+YL +VI E+LRL + R D + Y +P G + VH P+ +P P
Sbjct: 350 MEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPK 409
Query: 61 SFNPD 65
F+P
Sbjct: 410 EFDPS 414
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 49.1 bits (117), Expect = 9e-09
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ YL+ + KES R PS P + RV ++ + Y +P T ++V I+ + R PD + P
Sbjct: 348 LPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENP 407
Query: 60 NSFNPD 65
F P+
Sbjct: 408 EEFRPE 413
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 48.7 bits (116), Expect = 1e-08
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
+ YL+ +KE+LRL P +P + +ED + Y +P + + + + + R + + +P+
Sbjct: 363 LTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPD 422
Query: 61 SFNP 64
+F P
Sbjct: 423 TFKP 426
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 46.3 bits (109), Expect = 1e-07
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PE 58
+ Y ++KE+LR+ P +P I R +DT+ Y +PAGT +NV + V R ++ P
Sbjct: 350 LPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPN 409
Query: 59 PNSFNPD 65
P+ F P+
Sbjct: 410 PDEFRPE 416
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 45.7 bits (108), Expect = 2e-07
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M RVI+E+LR+ + F R ED ++ YL+P G + ++H D F +P
Sbjct: 326 MPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPG 385
Query: 61 SFNP 64
F+P
Sbjct: 386 KFDP 389
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 43.6 bits (103), Expect = 7e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 4 LERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSF 62
L VI ESLRL+P + R+ ED + G +P G I + + +H + + + N F
Sbjct: 377 LNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEF 436
Query: 63 NPD 65
NPD
Sbjct: 437 NPD 439
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 42.9 bits (101), Expect = 2e-06
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ YL V++E+ R+ P+ PF I T Y +PA T + + + R + +
Sbjct: 355 LNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDV 414
Query: 60 NSFNPD 65
F P+
Sbjct: 415 EEFRPE 420
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 42.0 bits (98), Expect = 4e-06
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 1 MKYLERVIKESLRLFPSVP-FIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPE- 58
+ YL+ VIKESLRL P +P + R D + G Y +PA T I V + V R + +
Sbjct: 347 LPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDN 406
Query: 59 PNSFNPD 65
PN F P+
Sbjct: 407 PNEFIPE 413
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 41.4 bits (97), Expect = 5e-06
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M++ + VI E+LRL V F+ R +D ++ Y +P+G + I VH + +P
Sbjct: 343 MEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQ 402
Query: 61 SFNP 64
FNP
Sbjct: 403 LFNP 406
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 38.8 bits (90), Expect = 5e-05
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPFI-GRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ YL+ +E+ R+ PS ++ V +DT G Y +P G++I+V + R P + +P
Sbjct: 373 LNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDP 432
Query: 60 NSFNPD 65
+ P+
Sbjct: 433 LVYEPE 438
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 38.6 bits (90), Expect = 5e-05
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M++ VI E+ RL V + R ++D + Y++P G I V ++ P +P+P
Sbjct: 326 MRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPM 385
Query: 61 SFNP 64
+FNP
Sbjct: 386 TFNP 389
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 37.6 bits (87), Expect = 1e-04
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLS----EDTQFGQYLVPAGTYINVEIFHVHRCPDQF 56
M YL+ V+ E LR P F VL ED + G YL+P G +N + + R ++
Sbjct: 366 MPYLKAVVLEGLRKHPPAHF---VLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREW 422
Query: 57 PEPNSFNPD 65
P F P+
Sbjct: 423 ERPMEFVPE 431
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 36.6 bits (84), Expect = 2e-04
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
+ Y++ +I+E+ RL P F + V DT Y +P G+ + + + + R P + +P
Sbjct: 386 LNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDP 445
Query: 60 NSFNPD 65
SF P+
Sbjct: 446 LSFKPE 451
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 36.6 bits (85), Expect = 3e-04
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 3 YLERVIKESLRLFPSVPF-IGRVLSED-TQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
Y +IKE+LR P PF + R S D G + +P I + + + R F P
Sbjct: 344 YTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPE 403
Query: 61 SFNP 64
F+P
Sbjct: 404 QFDP 407
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 34.7 bits (80), Expect = 0.001
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQY--LVPAGTYIN 43
M YL + ES+RLFP V F D++F ++P GT++
Sbjct: 353 MHYLHAALYESMRLFPPVQF-------DSKFAAEDDVLPDGTFVA 390
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 32.4 bits (74), Expect = 0.008
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 3 YLERVIKESLRLFPSVPFIGRVLS-EDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNS 61
YL+ V+KE+LRL ++P + ++ ED + G Y +PA + I V + + P+ + P
Sbjct: 354 YLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEE 413
Query: 62 FNPD 65
F P+
Sbjct: 414 FRPE 417
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 30.7 bits (69), Expect = 0.033
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M + + V+ E+LR+ + I R D + Y +P G + VH + F +
Sbjct: 329 MPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDAR 388
Query: 61 SFNP 64
+FNP
Sbjct: 389 TFNP 392
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 29.4 bits (66), Expect = 0.10
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 1 MKYLERVIKESLRLFPSVP 19
++YL VI E+LRL+P+VP
Sbjct: 371 LQYLHAVITETLRLYPAVP 389
>gnl|CDD|225233 COG2358, Imp, TRAP-type uncharacterized transport system,
periplasmic component [General function prediction
only].
Length = 321
Score = 27.3 bits (61), Expect = 0.47
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 12 LRLFP-SVPFIGRVLSEDTQFGQYLVPAGTYINVE 45
+ L P S I ++ + + + +PAGTY ++
Sbjct: 210 IVLVPISGEEIDKLEEKYPYYAKATIPAGTYPGID 244
>gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 27.0 bits (61), Expect = 0.67
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 21 IGRVLSED---TQFGQYLVPAGTYINVEI 46
+GRVL+ED + G+ +VPAGT I+ EI
Sbjct: 807 LGRVLAEDVVDPETGEVIVPAGTLIDEEI 835
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 26.1 bits (58), Expect = 1.1
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 4/23 (17%)
Query: 22 GRVLS----EDTQFGQYLVPAGT 40
GRV E QYLVPAG
Sbjct: 160 GRVYDAQEGERLGLAQYLVPAGE 182
>gnl|CDD|235070 PRK02797, PRK02797, 4-alpha-L-fucosyltransferase; Provisional.
Length = 322
Score = 26.0 bits (58), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 2 KYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYL 35
Y+E V + L LF + F ++L+E F YL
Sbjct: 190 AYIEEVRQAGLALFGAENF--QILTEKLPFDDYL 221
>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC).
superoxide dismutases (SODs) catalyze the conversion of
superoxide radicals to hydrogen peroxide and molecular
oxygen. Three evolutionarily distinct families of SODs
are known, of which the copper/zinc-binding family is
one. Defects in the human SOD1 gene cause familial
amyotrophic lateral sclerosis (Lou Gehrig's disease).
Structure is an eight-stranded beta sandwich, similar
to the immunoglobulin fold.
Length = 140
Score = 26.1 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 39 GTYINVEI---------FHVHRCPDQFPEPNS----FNPDNK 67
G + V++ FH+H D P S FNPD K
Sbjct: 25 GVLVTVDLSGLPPGKHGFHIHEFGDCSPGCTSAGGHFNPDGK 66
>gnl|CDD|226382 COG3864, COG3864, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 396
Score = 26.0 bits (57), Expect = 1.6
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPA 38
MK+ E K+ LR F +++ED F +L+
Sbjct: 1 MKFTEEFRKKFLRFIEESNF--DLMNEDNFFALFLIQI 36
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 25.7 bits (56), Expect = 1.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 3 YLERVIKESLRLFPSVPF 20
YL + ES+RL+P +PF
Sbjct: 356 YLHAALSESMRLYPPLPF 373
>gnl|CDD|238775 cd01517, PAP_phosphatase, PAP-phosphatase_like domains.
PAP-phosphatase is a member of the inositol
monophosphatase family, and catalyses the hydrolysis of
3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In
Saccharomyces cerevisiae, HAL2 (MET22) is involved in
methionine biosynthesis and provides increased salt
tolerance when over-expressed. Bacterial members of
this domain family may differ in their substrate
specificity and dephosphorylate different targets, as
the substrate binding site does not appear to be
conserved in that sub-set.
Length = 274
Score = 25.4 bits (56), Expect = 2.3
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 5 ERVIKESL-RLFPSVPFIG 22
+ +I +L RLFPS P +G
Sbjct: 46 QALITAALARLFPSDPIVG 64
>gnl|CDD|116050 pfam07429, Glyco_transf_56, 4-alpha-L-fucosyltransferase glycosyl
transferase group 56. This family contains the
bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc
transferase) (EC 2.4.1.-) (approximately 360 residues
long). This catalyzes the synthesis of
Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the
biosynthetic pathway of enterobacterial common antigen
(ECA), a polysaccharide comprised of the trisaccharide
repeat unit Fuc4NAc-ManNAcA-GlcNAc.
Length = 361
Score = 25.0 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 3 YLERVIKESLRLFPSVPFIGRVLSEDTQFGQYL 35
Y+E+V + L LFP+ ++L+E F YL
Sbjct: 230 YIEQVRQAGLALFPAENL--QILTEKLAFDDYL 260
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 24.1 bits (53), Expect = 7.7
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 1 MKYLERVIKESLRLFPSVPFI-GR------VLSEDTQF----GQYLVPAGTYINVEIFHV 49
M ++ V+ E+LR+ P VPF GR + S D F G+ L Y + V
Sbjct: 333 MPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEML---FGYQPL----V 385
Query: 50 HRCPDQFPEPNSFNPD 65
R P F P F PD
Sbjct: 386 TRDPKVFDRPEEFVPD 401
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.442
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,617,176
Number of extensions: 262767
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 34
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)