RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16905
(68 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 57.0 bits (136), Expect = 4e-12
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
M+YL+ V+ E+LRLFP + RV +D + +P G + + + +HR P + EP
Sbjct: 326 MEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPE 385
Query: 61 SFNPD 65
F P+
Sbjct: 386 KFLPE 390
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 46.7 bits (109), Expect = 2e-08
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPF-IGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
M Y E V+ E LR VP I SED Y +P GT + ++ VH + +P
Sbjct: 319 MPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDP 378
Query: 60 NSFNPD 65
F+P+
Sbjct: 379 EVFHPE 384
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 43.5 bits (101), Expect = 2e-07
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MKYLERVIKESLRLFPSVPFIGR-VLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEP 59
M Y + VI E RL +PF +++DTQF Y++P T + + P F P
Sbjct: 319 MPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETP 378
Query: 60 NSFNPD 65
N+FNP
Sbjct: 379 NTFNPG 384
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 37.1 bits (84), Expect = 4e-05
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 29 TQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
T+ + G I + +R + F P+ F+
Sbjct: 325 TEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDIT 361
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 34.8 bits (78), Expect = 2e-04
Identities = 8/55 (14%), Positives = 17/55 (30%)
Query: 14 LFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68
L R+ ED + G + + +R P P+ + + +
Sbjct: 276 LTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTREP 330
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 34.4 bits (77), Expect = 3e-04
Identities = 6/51 (11%), Positives = 16/51 (31%)
Query: 15 FPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
+ +++ + G I +R PD + ++F+
Sbjct: 282 AVKHLPLRYAVTDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDAT 332
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 33.5 bits (75), Expect = 9e-04
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
+ E ++E R +P PF+G ++ +D + GT + ++++ + P + P+
Sbjct: 268 SREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPD 327
Query: 61 SFNPD 65
F P+
Sbjct: 328 EFRPE 332
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 32.8 bits (73), Expect = 0.001
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 28 DTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
D +F YL+P GT I + + V +FP P F+P
Sbjct: 348 DIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPH 385
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 32.5 bits (72), Expect = 0.002
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 12 LRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
LR R +E+ + G +P + + V +R P QFP+P+ F+
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVT 333
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 31.7 bits (70), Expect = 0.004
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 23 RVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68
R ED G LV A I +R + F P+ FN + K
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKW 333
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 31.3 bits (69), Expect = 0.004
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 29 TQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68
+ + AG + V +R P+ FP+P+ + +
Sbjct: 294 VEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFERSP 333
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 30.2 bits (66), Expect = 0.011
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 13 RLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQF-PEPNSFNPD 65
P+ + R +ED G ++PAG + V + R P + F+
Sbjct: 278 FSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLT 331
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 30.1 bits (66), Expect = 0.013
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 30 QFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68
+F + G I + + P + ++
Sbjct: 296 EFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSRQK 334
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 29.5 bits (64), Expect = 0.021
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 27 EDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
+ + + + G + +R P+ FP+P+ F P
Sbjct: 326 GEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPA 364
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 28.6 bits (62), Expect = 0.041
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
K V + L P R+ +D L+ AG Y+ I +R P+P+
Sbjct: 273 EKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPD 332
Query: 61 SFNPDNKR 68
+ +
Sbjct: 333 VLDANRAA 340
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 28.3 bits (61), Expect = 0.059
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 28 DTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPDNKR 68
D ++ + G + + I R F P+ F+
Sbjct: 297 DLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRDT 337
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 26.3 bits (56), Expect = 0.26
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 1 MKYLERVIKESLRLFPSVPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPN 60
K + ++E+LR P V RV E + ++ G + V I +R + F +P+
Sbjct: 237 EKGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPD 296
Query: 61 SFNPD 65
SF PD
Sbjct: 297 SFIPD 301
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 25.9 bits (55), Expect = 0.37
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 18 VPFIGRVLSEDTQFGQYLVPAGTYINVEIFHVHRCPDQFPEPNSFNPD 65
+ R+ + D Q G LV G + V + + P+ FP P S D
Sbjct: 280 ADGLPRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELD 327
>d2ftsa2 b.103.1.1 (A:318-498) Gephyrin, domains 3 and 4 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 23.6 bits (50), Expect = 2.2
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 23 RVLSEDTQFGQYLVPAGTYIN 43
R + D + G+ ++ GT++
Sbjct: 141 RPIGHDIKRGECVLAKGTHMG 161
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 117
Score = 23.2 bits (49), Expect = 3.0
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 16 PSVPFIGRVLSEDTQFGQYLVP------AGTYINVEIFHVHRCPDQF 56
P+ F R+L VP G YI +E+ +
Sbjct: 1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTK 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.143 0.442
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,477
Number of extensions: 10414
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 21
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)