BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16906
         (120 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
           With Cholesterol-3-Sulphate
 pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
 pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
 pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
 pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
 pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
 pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
 pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
 pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
 pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
           Fluvoxamine Bound
 pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
           Bound
          Length = 456

 Score = 30.8 bits (68), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 14  FVDVFVEKCQILVDKLGDKCDGKA-FDVYPFITRCAMDIICETAMGIE 60
            ++ F EK + LV+ L  K DG+    +   +T  AMDI+ + A G+E
Sbjct: 105 LMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGME 152


>pdb|3C9A|A Chain A, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3C9A|B Chain B, High Resolution Crystal Structure Of Argos Bound To The
           Egf Domain Of Spitz
 pdb|3CGU|A Chain A, Crystal Structure Of Unliganded Argos
 pdb|3CGU|B Chain B, Crystal Structure Of Unliganded Argos
          Length = 223

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 46  RCAMDIICETAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYAST 105
           RC     C +++G+E       K+ + +    + +L + +  R + W             
Sbjct: 51  RCPDGRTCPSSLGVEDGHTIADKTRHYKMCQPVHKLPVCKHFRDYTWTLTTAAELNVTEQ 110

Query: 106 IHLPCRVPSNSV 117
           I + CR P NSV
Sbjct: 111 I-VHCRCPRNSV 121


>pdb|3BN7|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-like Protein
           (cc_2267) From Caulobacter Crescentus Cb15 At 1.64 A
           Resolution
          Length = 120

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 30  GDKCDGKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEISELTIVRSL-- 87
           GDK D     +       A+D+I +  +G+    +   K D V   Y++SEL + +S+  
Sbjct: 33  GDKADRDKL-IAGLKALKAIDVIQQLHVGVPAATE---KRDVVDNSYDVSELXVFKSVED 88

Query: 88  -RPWLWHPLVFKWTKYASTIHLPCRV 112
            + +  HPL+ K+   A   HL  +V
Sbjct: 89  QKRYRDHPLLQKFV--ADCSHLWSKV 112


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,537,308
Number of Sequences: 62578
Number of extensions: 121318
Number of successful extensions: 283
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 5
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)