Query psy16906
Match_columns 120
No_of_seqs 133 out of 1126
Neff 11.1
Searched_HMMs 46136
Date Fri Aug 16 16:43:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157|consensus 99.3 1.8E-11 3.9E-16 83.9 7.8 115 1-117 135-250 (497)
2 PLN02169 fatty acid (omega-1)- 99.2 5.1E-11 1.1E-15 81.7 5.3 89 2-90 134-227 (500)
3 KOG0158|consensus 99.2 1.9E-10 4.2E-15 78.2 8.0 81 1-81 132-213 (499)
4 PLN02738 carotene beta-ring hy 99.1 2.3E-10 5.1E-15 80.4 7.8 80 1-81 228-308 (633)
5 PLN03234 cytochrome P450 83B1; 99.1 6.9E-11 1.5E-15 80.9 4.6 78 2-79 130-208 (499)
6 PLN02936 epsilon-ring hydroxyl 99.1 6.9E-10 1.5E-14 76.0 8.3 80 1-81 113-194 (489)
7 PLN02426 cytochrome P450, fami 99.1 4.7E-10 1E-14 77.1 7.2 82 2-83 138-226 (502)
8 PLN02966 cytochrome P450 83A1 99.0 1.6E-09 3.4E-14 74.5 6.4 77 2-78 131-208 (502)
9 PLN02687 flavonoid 3'-monooxyg 98.9 1.9E-09 4.1E-14 74.3 5.5 78 4-81 137-216 (517)
10 KOG0159|consensus 98.9 5.2E-09 1.1E-13 70.9 7.0 110 5-117 161-278 (519)
11 PLN03195 fatty acid omega-hydr 98.9 8.5E-09 1.8E-13 71.1 7.5 79 1-79 129-211 (516)
12 PLN02290 cytokinin trans-hydro 98.9 1.4E-08 2.9E-13 70.1 7.6 62 1-62 158-221 (516)
13 PLN00110 flavonoid 3',5'-hydro 98.7 2.8E-08 6E-13 68.5 5.8 78 4-81 134-213 (504)
14 PLN03112 cytochrome P450 famil 98.7 1.2E-08 2.6E-13 70.3 3.9 60 3-62 134-194 (514)
15 PTZ00404 cytochrome P450; Prov 98.7 1.6E-08 3.4E-13 69.2 4.1 80 2-81 127-211 (482)
16 KOG0156|consensus 98.7 1.4E-08 3.1E-13 69.5 3.8 88 3-91 130-219 (489)
17 PF00067 p450: Cytochrome P450 98.6 1.3E-08 2.8E-13 68.2 1.3 80 2-82 102-184 (463)
18 PLN00168 Cytochrome P450; Prov 98.6 8E-08 1.7E-12 66.4 4.7 61 2-62 139-200 (519)
19 PLN02183 ferulate 5-hydroxylas 98.5 1.2E-07 2.5E-12 65.6 4.2 74 2-80 137-210 (516)
20 PLN02971 tryptophan N-hydroxyl 98.4 1E-06 2.3E-11 61.3 6.5 59 4-62 163-222 (543)
21 PLN02394 trans-cinnamate 4-mon 98.4 4.1E-06 8.8E-11 57.8 8.4 61 4-64 134-196 (503)
22 PLN02655 ent-kaurene oxidase 98.2 1.7E-06 3.8E-11 59.1 4.2 62 3-64 102-166 (466)
23 PLN02648 allene oxide synthase 98.2 1.1E-06 2.3E-11 60.5 2.7 61 2-63 133-194 (480)
24 PLN02500 cytochrome P450 90B1 98.1 9.8E-06 2.1E-10 55.8 6.6 58 2-62 140-198 (490)
25 PLN03018 homomethionine N-hydr 98.1 3E-05 6.6E-10 54.1 7.6 62 2-63 143-206 (534)
26 PLN02302 ent-kaurenoic acid ox 97.9 3.4E-05 7.4E-10 53.1 6.1 58 2-62 145-203 (490)
27 PLN02196 abscisic acid 8'-hydr 97.9 2.8E-05 6.1E-10 53.3 4.6 56 2-61 133-188 (463)
28 COG2124 CypX Cytochrome P450 [ 97.8 6E-05 1.3E-09 51.1 5.4 58 1-62 105-162 (411)
29 PLN02774 brassinosteroid-6-oxi 97.5 0.00022 4.8E-09 49.0 4.7 57 2-61 128-185 (463)
30 PLN03141 3-epi-6-deoxocathaste 97.4 0.00059 1.3E-08 46.7 6.0 57 2-61 109-166 (452)
31 PLN02987 Cytochrome P450, fami 94.5 0.11 2.4E-06 36.2 5.0 27 36-62 162-188 (472)
32 PRK15117 ABC transporter perip 46.2 74 0.0016 20.0 5.6 68 16-83 29-105 (211)
33 KOG0684|consensus 37.6 89 0.0019 22.5 4.2 54 5-61 134-188 (486)
34 PF01707 Peptidase_C9: Peptida 36.2 40 0.00088 20.9 2.2 22 42-63 83-104 (202)
35 smart00576 BTP Bromodomain tra 32.4 77 0.0017 16.2 3.3 27 6-32 24-50 (77)
36 PF15370 DUF4598: Domain of un 29.1 1.1E+02 0.0025 17.2 3.7 23 9-31 4-26 (112)
37 PF07524 Bromo_TP: Bromodomain 27.8 94 0.002 15.8 2.6 24 7-30 25-48 (77)
38 PF07830 PP2C_C: Protein serin 27.4 1.1E+02 0.0023 16.2 4.4 49 3-52 10-59 (81)
39 PRK12333 nucleoside triphospha 26.4 1.8E+02 0.0038 18.4 7.2 48 10-60 24-71 (204)
40 PF15630 CENP-S: Kinetochore c 25.3 1.1E+02 0.0024 15.8 3.6 37 6-42 26-65 (76)
41 cd08780 Death_TRADD Death Doma 24.6 1.3E+02 0.0028 16.3 3.1 52 6-58 30-89 (90)
42 PF13711 DUF4160: Domain of un 23.0 1.1E+02 0.0025 15.0 3.7 27 4-30 40-66 (66)
43 PF06377 Adipokin_hormo: Adipo 22.6 1E+02 0.0023 14.5 3.0 22 7-28 25-46 (48)
44 PF00325 Crp: Bacterial regula 22.4 83 0.0018 13.3 2.4 26 6-31 3-28 (32)
45 PF09452 Mvb12: ESCRT-I subuni 22.1 73 0.0016 17.2 1.4 27 13-39 38-65 (91)
No 1
>KOG0157|consensus
Probab=99.29 E-value=1.8e-11 Score=83.85 Aligned_cols=115 Identities=30% Similarity=0.500 Sum_probs=88.9
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccc-cccCCCccHHHHHHHHHH
Q psy16906 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEI-NAQRDSKSDYVRAVYEIS 79 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~-~~~~~~~~~~~~~~~~~~ 79 (120)
+++|+|+.+.++++.+.+.+++..+...+.....++.+|+.+.+.++|+|++|.++||... +.......++.+++..+.
T Consensus 135 ~~~~~f~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~tld~i~~~~~G~~~~~~~~~~~~~~~~a~~~~~ 214 (497)
T KOG0157|consen 135 LLTPAFHFEILKSFVPVFIESSLILLLLLELAASGEEVDLQDLLKRLTLDIICKTAMGPESLDAEGPELFEYVQAFDDLT 214 (497)
T ss_pred hccHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEcHHHHHHHHHHHHHHHHhcCCccccccCCcccHHHHHHHHHH
Confidence 4789999999999999999999998888877443444999999999999999999999332 222223468999999998
Q ss_pred HHHHHhhcccccchHHHHhcChhhhhhcccccCCCccc
Q psy16906 80 ELTIVRSLRPWLWHPLVFKWTKYASTIHLPCRVPSNSV 117 (120)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 117 (120)
..+..+...|+ ...+++.+. .++++.++.+.+++.+
T Consensus 215 ~~~~~~~~~p~-~~~~~~~~~-~~~~~~~a~~~~~~~~ 250 (497)
T KOG0157|consen 215 ELISKRINLPL-GTKFLYGLK-SERKLKKARKILHDFL 250 (497)
T ss_pred HHHHHHHcCch-hhhHHhhcc-hHHHHHHHHHHHHHHH
Confidence 88888888886 444444443 6677777776666543
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.17 E-value=5.1e-11 Score=81.71 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=66.3
Q ss_pred CCCCCChHhHHHH--HHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCC--CccHHHHHHH
Q psy16906 2 ITPTFHFKILDVF--VDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRD--SKSDYVRAVY 76 (120)
Q Consensus 2 l~p~fs~~~l~~~--~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~--~~~~~~~~~~ 76 (120)
++|+|+...++.+ .+.+.++++.+++.+++... |+++|+.+.+.++|+|+|++++||.+.+..+. ...++.+++.
T Consensus 134 l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~ 213 (500)
T PLN02169 134 NHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHENIIIDLQDVFMRFMFDTSSILMTGYDPMSLSIEMLEVEFGEAAD 213 (500)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEeHHHHHHHHHHHHHHhheeCCCccccCCCCCCCHHHHHHH
Confidence 5799999988753 47788888999999976543 67899999999999999999999998754432 2346777666
Q ss_pred HHHHHHHHhhcccc
Q psy16906 77 EISELTIVRSLRPW 90 (120)
Q Consensus 77 ~~~~~~~~~~~~~~ 90 (120)
.+......+...|+
T Consensus 214 ~~~~~~~~~~~~p~ 227 (500)
T PLN02169 214 IGEEAIYYRHFKPV 227 (500)
T ss_pred HHHHHHHhHHhccH
Confidence 65554444455554
No 3
>KOG0158|consensus
Probab=99.17 E-value=1.9e-10 Score=78.21 Aligned_cols=81 Identities=26% Similarity=0.360 Sum_probs=69.1
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHHH
Q psy16906 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEIS 79 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~ 79 (120)
.++|.||..+++.+.|.+++.++++++.++++.. +..+++.+.+.++|.|||++|+||.+.+++.+...++......+.
T Consensus 132 ~lsP~Fts~kmk~m~~t~~~~~~~l~~~l~~~~~~~~~~~~~dl~~~yT~DVI~~~AfG~~~~s~~d~~~~F~~~~~~~~ 211 (499)
T KOG0158|consen 132 KLSPTFTSGKLKKMFPTMEEVGDELVRHLRRKSEGGQEGEIKDLCARYTTDVIGSCAFGLDANSLRDPKAEFRRMGRRAF 211 (499)
T ss_pred hhccccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHhHhhcccchhhhcCchHHHHHhhHHHH
Confidence 3789999999999999999999999999998654 458999999999999999999999999988766667766555544
Q ss_pred HH
Q psy16906 80 EL 81 (120)
Q Consensus 80 ~~ 81 (120)
..
T Consensus 212 ~~ 213 (499)
T KOG0158|consen 212 FL 213 (499)
T ss_pred HH
Confidence 43
No 4
>PLN02738 carotene beta-ring hydroxylase
Probab=99.15 E-value=2.3e-10 Score=80.37 Aligned_cols=80 Identities=21% Similarity=0.432 Sum_probs=65.7
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHHH
Q psy16906 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEIS 79 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~ 79 (120)
+++|.|+.+.++.+.+++.+.+++++++|++... |+++|+...+..+++|+|++++||.+++.... +..+.+.+...+
T Consensus 228 ~l~p~Fs~~~v~~l~~~i~~~v~~L~~~L~~~~~~g~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~-~~~~~~~~~~~~ 306 (633)
T PLN02738 228 AIVPALHQKYVAAMISLFGQASDRLCQKLDAAASDGEDVEMESLFSRLTLDIIGKAVFNYDFDSLSN-DTGIVEAVYTVL 306 (633)
T ss_pred hccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHHHHHHHHHHHhCCCcccccc-chHHHHHHHHHH
Confidence 3789999999999999999999999999987544 78999999999999999999999999876543 234555555544
Q ss_pred HH
Q psy16906 80 EL 81 (120)
Q Consensus 80 ~~ 81 (120)
..
T Consensus 307 ~~ 308 (633)
T PLN02738 307 RE 308 (633)
T ss_pred HH
Confidence 43
No 5
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.13 E-value=6.9e-11 Score=80.93 Aligned_cols=78 Identities=21% Similarity=0.367 Sum_probs=63.4
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHHH
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEIS 79 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~ 79 (120)
++|.|++++++.+.+.+.++++++++.|.+... ++++|+.+.+..+++|++++++||.+++..+.+..++.+++.+..
T Consensus 130 ~~~~f~~~~l~~~~~~i~~~~~~ll~~l~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~ 208 (499)
T PLN03234 130 MVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGTVDLSELLLSFTNCVVCRQAFGKRYNEYGTEMKRFIDILYETQ 208 (499)
T ss_pred HHHhcCHHHHHHhHHHHHHHHHHHHHHHHHhccCCCeEEHHHHHHHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence 358999999999999999999999999976544 678999999999999999999999988654322345555555443
No 6
>PLN02936 epsilon-ring hydroxylase
Probab=99.10 E-value=6.9e-10 Score=75.99 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=64.7
Q ss_pred CCCCCCChHhHHHHHH-HHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHH
Q psy16906 1 MITPTFHFKILDVFVD-VFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEI 78 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~-~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~ 78 (120)
+++|.|+.++++.+.+ ++.++++++++.|.+... |+++|+.+++..+++|+++.++||.+++..+. +.++.+++...
T Consensus 113 ~l~~~f~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~-~~~~~~~~~~~ 191 (489)
T PLN02936 113 AVVPSLHRRYLSVMVDRVFCKCAERLVEKLEPVALSGEAVNMEAKFSQLTLDVIGLSVFNYNFDSLTT-DSPVIQAVYTA 191 (489)
T ss_pred hhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHcCCCcccccc-CcHHHHHHHHH
Confidence 4789999999998765 889999999999987654 67899999999999999999999999876543 24566666554
Q ss_pred HHH
Q psy16906 79 SEL 81 (120)
Q Consensus 79 ~~~ 81 (120)
+..
T Consensus 192 ~~~ 194 (489)
T PLN02936 192 LKE 194 (489)
T ss_pred HHH
Confidence 443
No 7
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.09 E-value=4.7e-10 Score=77.06 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=64.7
Q ss_pred CCCCCChHhHHHHH--HHHHHHHHHHHHHHhhhcC---CCceehhHHHHHHHHHHHHHHhhcccccccCC--CccHHHHH
Q psy16906 2 ITPTFHFKILDVFV--DVFVEKCQILVDKLGDKCD---GKAFDVYPFITRCAMDIICETAMGIEINAQRD--SKSDYVRA 74 (120)
Q Consensus 2 l~p~fs~~~l~~~~--~~~~~~~~~l~~~l~~~~~---~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~--~~~~~~~~ 74 (120)
++|.|+.+.++.+. +++.+.++.+++.|.+..+ |.++|+.+++.++++|+|++++||.+++.++. +..++.++
T Consensus 138 l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~l~~~~~~~~~~~~ 217 (502)
T PLN02426 138 ASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADDGEGAVLDLQDVFRRFSFDNICKFSFGLDPGCLELSLPISEFADA 217 (502)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEcHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccHHHHH
Confidence 67999999999874 6788888899998876432 36799999999999999999999999876543 23567777
Q ss_pred HHHHHHHHH
Q psy16906 75 VYEISELTI 83 (120)
Q Consensus 75 ~~~~~~~~~ 83 (120)
+..+.....
T Consensus 218 ~~~~~~~~~ 226 (502)
T PLN02426 218 FDTASKLSA 226 (502)
T ss_pred HHHHHHHHH
Confidence 776655443
No 8
>PLN02966 cytochrome P450 83A1
Probab=98.98 E-value=1.6e-09 Score=74.45 Aligned_cols=77 Identities=17% Similarity=0.394 Sum_probs=62.4
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHH
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEI 78 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~ 78 (120)
++|+|++++++.+.+.+.++++++++.|.+... ++++|+.+.+..+++|++++++||.+++..+.+..++.+++...
T Consensus 131 ~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vdl~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~ 208 (502)
T PLN02966 131 MNHLFSPTRVATFKHVREEEARRMMDKINKAADKSEVVDISELMLTFTNSVVCRQAFGKKYNEDGEEMKRFIKILYGT 208 (502)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeHHHHHHHHHHHHHHHHHhCCccCccchHHHHHHHHHHHH
Confidence 568999999999999999999999999976544 67899999999999999999999998865432223444444443
No 9
>PLN02687 flavonoid 3'-monooxygenase
Probab=98.94 E-value=1.9e-09 Score=74.34 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=62.9
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccccccCC--CccHHHHHHHHHHHH
Q psy16906 4 PTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEINAQRD--SKSDYVRAVYEISEL 81 (120)
Q Consensus 4 p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~--~~~~~~~~~~~~~~~ 81 (120)
|+|+.++++.+.+.+.++++++++.|.+..+++++|+.+.+..+++|+|+.++||.++...+. ....+.+.+..++..
T Consensus 137 ~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (517)
T PLN02687 137 HLFSAKALDDFRHVREEEVALLVRELARQHGTAPVNLGQLVNVCTTNALGRAMVGRRVFAGDGDEKAREFKEMVVELMQL 216 (517)
T ss_pred HhCCHHHHHHhHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHHhCccccccCCcchHHHHHHHHHHHHHH
Confidence 789999999999999999999999997643367899999999999999999999998754332 124566666655543
No 10
>KOG0159|consensus
Probab=98.93 E-value=5.2e-09 Score=70.93 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=90.0
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHHHhhhcC----CCceehhHHHHHHHHHHHHHHhhcccccccCCC----ccHHHHHHH
Q psy16906 5 TFHFKILDVFVDVFVEKCQILVDKLGDKCD----GKAFDVYPFITRCAMDIICETAMGIEINAQRDS----KSDYVRAVY 76 (120)
Q Consensus 5 ~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~----~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~----~~~~~~~~~ 76 (120)
..++++++.|.|.+++.++.++++++...+ +.+.|+.+.+.+++++.||.++||.+.+.+... ...+.++++
T Consensus 161 ll~P~~v~~yl~~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~ 240 (519)
T KOG0159|consen 161 LLQPQAVRRYLPQLNAVSDDFVERLRAQRDPERGELVPDFAQELYRWSLESICLVLLGTRLGLLGESPPSEAQQFIDAIK 240 (519)
T ss_pred hcCHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHH
Confidence 467899999999999999999999987654 246899999999999999999999999887642 257899999
Q ss_pred HHHHHHHHhhcccccchHHHHhcChhhhhhcccccCCCccc
Q psy16906 77 EISELTIVRSLRPWLWHPLVFKWTKYASTIHLPCRVPSNSV 117 (120)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 117 (120)
.++..+......|.+|. |..++.+|++.++.+.+.+++
T Consensus 241 ~~F~~s~~l~~~p~l~r---~~~t~~wk~~~~~~D~i~~~~ 278 (519)
T KOG0159|consen 241 KMFESSAQLMLMPSLWR---YFPTKVWKDFVRAWDQIFDVG 278 (519)
T ss_pred HHHHhHHHHHhcchHHH---hCCChHHHHHHHHHHHHHHHH
Confidence 99998888888873322 446888999988887766543
No 11
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=98.90 E-value=8.5e-09 Score=71.10 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCCCCChHhHHHHHHHH-HHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCC--ccHHHHHHH
Q psy16906 1 MITPTFHFKILDVFVDVF-VEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDS--KSDYVRAVY 76 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~-~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~--~~~~~~~~~ 76 (120)
+++|+|+.++++.+.+.+ .+.++.+++.+++... |+++|+.+++..+++|+|++++||.+++..+.+ ...+.+++.
T Consensus 129 ~l~~~fs~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~ 208 (516)
T PLN03195 129 TASFEFASKNLRDFSTVVFREYSLKLSSILSQASFANQVVDMQDLFMRMTLDSICKVGFGVEIGTLSPSLPENPFAQAFD 208 (516)
T ss_pred hcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEcHHHHHHHHHHHHHHHHHhCCCccccccCCCccHHHHHHH
Confidence 468999999999999976 6667888888875433 678999999999999999999999988755432 235666555
Q ss_pred HHH
Q psy16906 77 EIS 79 (120)
Q Consensus 77 ~~~ 79 (120)
...
T Consensus 209 ~~~ 211 (516)
T PLN03195 209 TAN 211 (516)
T ss_pred HHH
Confidence 443
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=98.87 E-value=1.4e-08 Score=70.08 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=55.5
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-C-CceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-G-KAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~-~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
+++|+|+.++++.+.+.+.++++++++.|.+... + .++|+.+.+..+++|++++++||.+++
T Consensus 158 ~~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~ 221 (516)
T PLN02290 158 IAAPAFMGDRLKGYAGHMVECTKQMLQSLQKAVESGQTEVEIGEYMTRLTADIISRTEFDSSYE 221 (516)
T ss_pred hcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEhHHHHHHHHHHHHHHHHcCCccc
Confidence 3689999999999999999999999999986533 3 589999999999999999999998874
No 13
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=98.73 E-value=2.8e-08 Score=68.47 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=61.8
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhccccc-ccCCCccHHHHHHHHHHHH
Q psy16906 4 PTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEIN-AQRDSKSDYVRAVYEISEL 81 (120)
Q Consensus 4 p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~-~~~~~~~~~~~~~~~~~~~ 81 (120)
+.|++++++.+.+.+.++++.+++.+.+... |+++|+.+++..+++|+|++++||.++. ..+.+.+++.+++..++..
T Consensus 134 ~~f~~~~l~~~~~~i~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~vi~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~ 213 (504)
T PLN00110 134 HMLGGKALEDWSQVRTVELGHMLRAMLELSQRGEPVVVPEMLTFSMANMIGQVILSRRVFETKGSESNEFKDMVVELMTT 213 (504)
T ss_pred HhCCHHHHHHhhHHHHHHHHHHHHHHHHhccCCCcEeHHHHHHHHHHHHHHHHHhCCcccccCchhHHHHHHHHHHHHHH
Confidence 4799999999999999999999999976444 7789999999999999999999998762 2222235677777665543
No 14
>PLN03112 cytochrome P450 family protein; Provisional
Probab=98.73 E-value=1.2e-08 Score=70.35 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=53.5
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 3 TPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 3 ~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
+|.|+.++++.+.+.+.++++.+++.+.+... |+++|+.+.+..+++|++++++||.++.
T Consensus 134 ~~~f~~~~l~~~~~~~~~~~~~lv~~l~~~~~~~~~vd~~~~~~~~~~~vi~~~~fG~~~~ 194 (514)
T PLN03112 134 EHLLTTKRLESFAKHRAEEARHLIQDVWEAAQTGKPVNLREVLGAFSMNNVTRMLLGKQYF 194 (514)
T ss_pred HHhcCHHHHHHhhHHHHHHHHHHHHHHHHhhccCCeeeHHHHHHHHHHHHHHHHHcCCccc
Confidence 57899999999999999999999998765433 6789999999999999999999998874
No 15
>PTZ00404 cytochrome P450; Provisional
Probab=98.72 E-value=1.6e-08 Score=69.21 Aligned_cols=80 Identities=11% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCC----CccHHHHHHH
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRD----SKSDYVRAVY 76 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~----~~~~~~~~~~ 76 (120)
++|+|+.+.++++.+.+.++++.+++.|.+... |+++|+...+.++++|++++++||.+++..+. ...++...+.
T Consensus 127 ~~~~f~~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~ 206 (482)
T PTZ00404 127 VGKAMRKTNLKHIYDLLDDQVDVLIESMKKIESSGETFEPRYYLTKFTMSAMFKYIFNEDISFDEDIHNGKLAELMGPME 206 (482)
T ss_pred HHHHHhhhccccHHHHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHH
Confidence 578999999999999999999999999976543 67899999999999999999999998764321 1135566665
Q ss_pred HHHHH
Q psy16906 77 EISEL 81 (120)
Q Consensus 77 ~~~~~ 81 (120)
.++..
T Consensus 207 ~~~~~ 211 (482)
T PTZ00404 207 QVFKD 211 (482)
T ss_pred HHHHH
Confidence 55543
No 16
>KOG0156|consensus
Probab=98.71 E-value=1.4e-08 Score=69.52 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=69.6
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCCc-cHHHHHHHHHHH
Q psy16906 3 TPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSK-SDYVRAVYEISE 80 (120)
Q Consensus 3 ~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~-~~~~~~~~~~~~ 80 (120)
+..|+...++++...+.++++.+++.+.+ .. ++++|+...+..++.++|++++||.+++..+.+. .++...+.+..+
T Consensus 130 ~~L~~~~~~~~~~~~R~~E~~~l~~~l~~-~~~~~~vdl~~~l~~~~~nvI~~~~fG~rf~~~~~~~~~~~~~l~~~~~~ 208 (489)
T KOG0156|consen 130 TELRSFGRGKSFMEIREEEVDELVKKLSK-SKKGEPVDLSELLDLLVGNVICRMLFGRRFEEEDEEEFLELKELVEESLE 208 (489)
T ss_pred HHhcChhhhhhhHHHHHHHHHHHHHHHHh-cCCCceeeHHHHHHHHHHHHHHHHHhCCccccCCchHHHHHHHHHHHHHH
Confidence 45688999999999999999999999987 33 4799999999999999999999999997653222 457777777777
Q ss_pred HHHHhhccccc
Q psy16906 81 LTIVRSLRPWL 91 (120)
Q Consensus 81 ~~~~~~~~~~~ 91 (120)
..+......++
T Consensus 209 ~~~~~~~~d~~ 219 (489)
T KOG0156|consen 209 LLGSFNLSDYF 219 (489)
T ss_pred HhCCccHHHHh
Confidence 76654444333
No 17
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=98.61 E-value=1.3e-08 Score=68.19 Aligned_cols=80 Identities=26% Similarity=0.480 Sum_probs=62.7
Q ss_pred CCCCCChH-hHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccccCCC-ccHHHHHHHHH
Q psy16906 2 ITPTFHFK-ILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDS-KSDYVRAVYEI 78 (120)
Q Consensus 2 l~p~fs~~-~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~-~~~~~~~~~~~ 78 (120)
++|.|+.. .+ .+.+.+.+.++.+++.|.+... ++++|+.+++..+++|++++++||.+++..+.+ ..++.+.+..+
T Consensus 102 ~~~~~~~~~~~-~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~d~i~~~~fG~~~~~~~~~~~~~~~~~~~~~ 180 (463)
T PF00067_consen 102 LAPAFSSKKIL-KLEPLIDEEAEELIDQLRKKAGSSGPVDLFDWLRRFALDVIGRVLFGKDFGSLDDEDFEEFLEAFDEL 180 (463)
T ss_dssp HHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHTTTSESEEEHHHHHHHHHHHHHHHHHHSSHHHGTTHHHHHHHHHHHHHH
T ss_pred ccccccccccc-ccccccccccccccccccccccccceeeeecccccccccccccccccceeeecccccccccccccccc
Confidence 35677777 56 8999999999999999998654 347999999999999999999999998755432 23566666666
Q ss_pred HHHH
Q psy16906 79 SELT 82 (120)
Q Consensus 79 ~~~~ 82 (120)
....
T Consensus 181 ~~~~ 184 (463)
T PF00067_consen 181 FELL 184 (463)
T ss_dssp HHHH
T ss_pred cccc
Confidence 5533
No 18
>PLN00168 Cytochrome P450; Provisional
Probab=98.59 E-value=8e-08 Score=66.41 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=54.9
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
++|+|+.++++.+.+.+.++++.+++.|.+... ++++|+...+..+++++++.++||.+++
T Consensus 139 ~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~ 200 (519)
T PLN00168 139 VAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLD 200 (519)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcC
Confidence 579999999999999999999999999986543 4578999999999999999999998875
No 19
>PLN02183 ferulate 5-hydroxylase
Probab=98.53 E-value=1.2e-07 Score=65.60 Aligned_cols=74 Identities=18% Similarity=0.315 Sum_probs=58.0
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccccccCCCccHHHHHHHHHHH
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYEISE 80 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~~~~~~~~~~~~~~~~~ 80 (120)
++|+|+.+.++.+.+++ ++++.+++.|.+. .|+++|+.+.+..+++|++++++||.+.+.. .+++.+.+..+..
T Consensus 137 ~~~~f~~~~l~~~~~~~-~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~vi~~~~fG~~~~~~---~~~~~~~~~~~~~ 210 (516)
T PLN02183 137 VMKLFSRKRAESWASVR-DEVDSMVRSVSSN-IGKPVNIGELIFTLTRNITYRAAFGSSSNEG---QDEFIKILQEFSK 210 (516)
T ss_pred HHHhcCHHHHHHHHHHH-HHHHHHHHHHHhc-CCCcEeHHHHHHHHHHHHHHhHhhcCcccch---HHHHHHHHHHHHH
Confidence 46899999999988865 6789999999642 2778999999999999999999999876431 2456666555443
No 20
>PLN02971 tryptophan N-hydroxylase
Probab=98.41 E-value=1e-06 Score=61.34 Aligned_cols=59 Identities=12% Similarity=-0.027 Sum_probs=50.4
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 4 PTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 4 p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
+.|++..++.+.+++.++++.+++.+.+... ++++|+...+.++++|++++++||.++.
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~ 222 (543)
T PLN02971 163 EIVCPARHRWLHDNRAEETDHLTAWLYNMVKNSEPVDLRFVTRHYCGNAIKRLMFGTRTF 222 (543)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHhCCccc
Confidence 4567777888889999999999998876443 6689999999999999999999998863
No 21
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=98.36 E-value=4.1e-06 Score=57.82 Aligned_cols=61 Identities=10% Similarity=0.215 Sum_probs=54.0
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHhhhcC--CCceehhHHHHHHHHHHHHHHhhccccccc
Q psy16906 4 PTFHFKILDVFVDVFVEKCQILVDKLGDKCD--GKAFDVYPFITRCAMDIICETAMGIEINAQ 64 (120)
Q Consensus 4 p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~--~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~ 64 (120)
|.|++++++.+.+.++++++++++.|.+... ++.+|+.+.+..+++|++++++||.+++..
T Consensus 134 ~~f~~~~l~~~~~~i~~~v~~lv~~l~~~~~~~~~~v~~~~~~~~~~~dvi~~~~fG~~~~~~ 196 (503)
T PLN02394 134 PFFTNKVVQQYRYGWEEEADLVVEDVRANPEAATEGVVIRRRLQLMMYNIMYRMMFDRRFESE 196 (503)
T ss_pred HhcChHHHHHhhHHHHHHHHHHHHHHHHhhhccCCcEecHHHHHHHHHHHHHHHHhCCCcccc
Confidence 8899999999999999999999999976432 456999999999999999999999988653
No 22
>PLN02655 ent-kaurene oxidase
Probab=98.22 E-value=1.7e-06 Score=59.13 Aligned_cols=62 Identities=8% Similarity=0.031 Sum_probs=52.5
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC---CCceehhHHHHHHHHHHHHHHhhccccccc
Q psy16906 3 TPTFHFKILDVFVDVFVEKCQILVDKLGDKCD---GKAFDVYPFITRCAMDIICETAMGIEINAQ 64 (120)
Q Consensus 3 ~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~---~~~vd~~~~~~~~~~dvi~~~~fg~~~~~~ 64 (120)
+|.|+...++.+.+.+++.++.+++.+.+... ++++|+...+..+++|+++.++||.+++..
T Consensus 102 ~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~~ 166 (466)
T PLN02655 102 NNLLGANAQKRFRDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLIQALGEDVESV 166 (466)
T ss_pred HHhcCchHHHHhHHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHHHHhccccccc
Confidence 46678888888999999999999998875422 578999999999999999999999887654
No 23
>PLN02648 allene oxide synthase
Probab=98.20 E-value=1.1e-06 Score=60.49 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=52.3
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccc
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINA 63 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~ 63 (120)
+.|+|+ ..++.+.|.|.+.++.+++.|..... +.++|+.+.+..+++|++++++||.+.+.
T Consensus 133 l~~~f~-~~~~~~~~~m~~~~~~~~~~w~~~~~~~~~vdv~~~~~~lt~~vi~~~lfG~~~~~ 194 (480)
T PLN02648 133 LFELLK-SRHRRFIPEFRAAFAELFDTWEAELAKKGKAEFNDPLDQMAFNFLCKALTGKDPSE 194 (480)
T ss_pred HHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHhhCCCccccchHHHHHHHHHHHHHcCCCcch
Confidence 568898 57788999999999999999965422 56799999999999999999999987654
No 24
>PLN02500 cytochrome P450 90B1
Probab=98.15 E-value=9.8e-06 Score=55.82 Aligned_cols=58 Identities=7% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCCCCChHhHHH-HHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 2 ITPTFHFKILDV-FVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 2 l~p~fs~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
++|.|++.+++. +.+.+.+.+..+++.|.+ ++++|+.+.+..+++|++++++||.+.+
T Consensus 140 ~~~~f~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vd~~~~~~~~~~~vi~~~~fg~~~~ 198 (490)
T PLN02500 140 SLNFLSHARLRTHLLKEVERHTLLVLDSWKE---NSTFSAQDEAKKFTFNLMAKHIMSMDPG 198 (490)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEehHHHHHHHHHHHHHHHhCCCCC
Confidence 468899999987 567888888888888754 5679999999999999999999998753
No 25
>PLN03018 homomethionine N-hydroxylase
Probab=98.06 E-value=3e-05 Score=54.12 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=47.5
Q ss_pred CCCCCC-hHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHHHHHhhcccccc
Q psy16906 2 ITPTFH-FKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINA 63 (120)
Q Consensus 2 l~p~fs-~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi~~~~fg~~~~~ 63 (120)
++|.|. .+..+.+.+++..+++++++.|.+... ++++|+.+.+.++++|++++++||.+++.
T Consensus 143 l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~t~~vi~~~~fG~~~~~ 206 (534)
T PLN03018 143 ITTEIMSVKTLNMLEAARTIEADNLIAYIHSMYQRSETVDVRELSRVYGYAVTMRMLFGRRHVT 206 (534)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeHHHHHHHHHHHHHHHHHhCCcccc
Confidence 345554 444444556666778999999986433 56799999999999999999999998754
No 26
>PLN02302 ent-kaurenoic acid oxidase
Probab=97.94 E-value=3.4e-05 Score=53.06 Aligned_cols=58 Identities=10% Similarity=0.138 Sum_probs=50.7
Q ss_pred CCCCC-ChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 2 ITPTF-HFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 2 l~p~f-s~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
++|.| ++++++.+.+.+.+.++++++.|.. ++.+|+.+.+..+++|++++++||.+.+
T Consensus 145 ~~~~f~~~~~l~~~~~~i~~~v~~~~~~~~~---~~~v~~~~~~~~~~~~vi~~~~~G~~~~ 203 (490)
T PLN02302 145 TAAPVNGPEALSTYIPYIEENVKSCLEKWSK---MGEIEFLTELRKLTFKIIMYIFLSSESE 203 (490)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHhcC---CCCEehHHHHHHHHHHHHHHHHcCCCCh
Confidence 56888 4789999999999999999999854 4469999999999999999999998753
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=97.86 E-value=2.8e-05 Score=53.30 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=50.6
Q ss_pred CCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccc
Q psy16906 2 ITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEI 61 (120)
Q Consensus 2 l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~ 61 (120)
++|.|++++++.+.+.+.+.++++++.|. +.++|+.+.+..+++|+++.++||.+.
T Consensus 133 l~~~f~~~~l~~~~~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~v~~~~~fG~~~ 188 (463)
T PLN02196 133 VLRAFMPDAIRNMVPDIESIAQESLNSWE----GTQINTYQEMKTYTFNVALLSIFGKDE 188 (463)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHcCC----CCeEEeHHHHHHHHHHHHHHHHcCCCC
Confidence 56889999999999999999999998884 457999999999999999999999874
No 28
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.80 E-value=6e-05 Score=51.05 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=52.1
Q ss_pred CCCCCCChHhHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 1 ~l~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
+++|+|+++.++.+.|.+.+.++++++.+ .. ++..++.+.+..+++++|+ .+||.+.+
T Consensus 105 l~~~~F~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~v~~~a~~l~~~vi~-~l~Gv~~~ 162 (411)
T COG2124 105 LLAPAFTPRALRGYRPLIREIADRLLDDL-WQ--GGADLVLDFAAELTLRVIA-ELLGVPLE 162 (411)
T ss_pred HhccccCHHHHHHHHHHHHHHHHHHHHhc-cc--CCchhHHHHhhhhhHHHHH-HHhCCCHH
Confidence 47899999999999999999999999998 32 4688999999999999999 99998764
No 29
>PLN02774 brassinosteroid-6-oxidase
Probab=97.50 E-value=0.00022 Score=48.96 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=49.3
Q ss_pred CCCCCChHhHHH-HHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccc
Q psy16906 2 ITPTFHFKILDV-FVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEI 61 (120)
Q Consensus 2 l~p~fs~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~ 61 (120)
++|+|+++.++. +.+.+.+.++++++.|.. ++++|+.+.+..++++++++++||.+.
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~g~~~ 185 (463)
T PLN02774 128 LLSLISPTMIRDHLLPKIDEFMRSHLSGWDG---LKTIDIQEKTKEMALLSALKQIAGTLS 185 (463)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhhCC---CCCEEeeHHHHHHHHHHHHHHHcCCCC
Confidence 468899999986 789999999999888854 567999999999999999999999764
No 30
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=97.42 E-value=0.00059 Score=46.72 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=44.1
Q ss_pred CCCCCChHhHHH-HHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhcccc
Q psy16906 2 ITPTFHFKILDV-FVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEI 61 (120)
Q Consensus 2 l~p~fs~~~l~~-~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~ 61 (120)
++|.|+..++.. ..+.+.+.+.++++.|.. ++++|+.+.+..++++++++++||.+.
T Consensus 109 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vi~~~~~G~~~ 166 (452)
T PLN03141 109 IGAFLKSPHLKAQITRDMERYVSESLDSWRD---DPPVLVQDETKKIAFEVLVKALISLEP 166 (452)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHhccC---CCCEEhHHHHHHHHHHHHHHHHcCCCc
Confidence 457787777765 356666777666666642 678999999999999999999999764
No 31
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=94.53 E-value=0.11 Score=36.17 Aligned_cols=27 Identities=4% Similarity=0.089 Sum_probs=24.0
Q ss_pred CceehhHHHHHHHHHHHHHHhhccccc
Q psy16906 36 KAFDVYPFITRCAMDIICETAMGIEIN 62 (120)
Q Consensus 36 ~~vd~~~~~~~~~~dvi~~~~fg~~~~ 62 (120)
+++++.+.+.++++|++++++||.+.+
T Consensus 162 ~~v~~~~~~~~~t~~vi~~~~fg~~~~ 188 (472)
T PLN02987 162 SRVLLMEEAKKITFELTVKQLMSFDPG 188 (472)
T ss_pred cceehHHHHHHHHHHHHHHHHcCCCCh
Confidence 469999999999999999999997653
No 32
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=46.21 E-value=74 Score=20.00 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhhhcC---CCceehhHHHHHH-----HHHHHHHHhhcccccccCCCc-cHHHHHHHHHHHHHH
Q psy16906 16 DVFVEKCQILVDKLGDKCD---GKAFDVYPFITRC-----AMDIICETAMGIEINAQRDSK-SDYVRAVYEISELTI 83 (120)
Q Consensus 16 ~~~~~~~~~l~~~l~~~~~---~~~vd~~~~~~~~-----~~dvi~~~~fg~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (120)
..+.+.++++++.+.+... +.+-.+...+... -++-|++.++|......+.++ .+|.+++.+++....
T Consensus 29 ~~V~~~~~~vl~~l~~~~~~~~~~~~~~~~~v~~~l~p~~Df~~~s~~vLG~~wr~as~eQr~~F~~~F~~~Lv~tY 105 (211)
T PRK15117 29 KLMDEAAQKTFDRLKNEQPKIRANPDYLRTIVDQELLPYVQVKYAGALVLGRYYKDATPAQREAYFAAFREYLKQAY 105 (211)
T ss_pred HHHHHHHHHHHHHHHhCHHhhccCHHHHHHHHHHHccccCCHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888876321 2233333333332 467889999998876654332 578888877665443
No 33
>KOG0684|consensus
Probab=37.65 E-value=89 Score=22.50 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHH-HhhhcCCCceehhHHHHHHHHHHHHHHhhcccc
Q psy16906 5 TFHFKILDVFVDVFVEKCQILVDK-LGDKCDGKAFDVYPFITRCAMDIICETAMGIEI 61 (120)
Q Consensus 5 ~fs~~~l~~~~~~~~~~~~~l~~~-l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~~ 61 (120)
++....++++.+.|.++..+.++. |.+ +...|....+...+.=.++.+..|...
T Consensus 134 ~L~~~~lk~~~e~m~~el~~~f~~~~~~---s~~~d~l~~~~~~ii~tAs~~ll~~e~ 188 (486)
T KOG0684|consen 134 ALGGVALKSLVELMLEELHAYFETSLGE---SGETDGLYTFCRLIIFTASRLLLGGEV 188 (486)
T ss_pred HhchhhHHHHHHHHHHHHHHHHhccccc---ccchhHhhhhhHHHhhhhHHHhhhhhh
Confidence 345567888888888888877766 433 234455555555555555666665443
No 34
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=36.22 E-value=40 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.634 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc
Q psy16906 42 PFITRCAMDIICETAMGIEINA 63 (120)
Q Consensus 42 ~~~~~~~~dvi~~~~fg~~~~~ 63 (120)
.+.-.+++|.||--+||.|.++
T Consensus 83 a~S~e~ALn~ictr~fG~DLdS 104 (202)
T PF01707_consen 83 AYSPEVALNEICTRFFGVDLDS 104 (202)
T ss_dssp ---HHHHHHHHHHHHHSS-GGG
T ss_pred ccCHHHHHHHHHHHHhccccCc
Confidence 3446789999999999998853
No 35
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=32.36 E-value=77 Score=16.20 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=15.7
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHhhh
Q psy16906 6 FHFKILDVFVDVFVEKCQILVDKLGDK 32 (120)
Q Consensus 6 fs~~~l~~~~~~~~~~~~~l~~~l~~~ 32 (120)
.++..++.+..+..+...++.+...+.
T Consensus 24 ~~~sale~ltdi~~~yl~~l~~~~~~~ 50 (77)
T smart00576 24 FQESALETLTDILQSYIQELGRTAHSY 50 (77)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665555443
No 36
>PF15370 DUF4598: Domain of unknown function (DUF4598)
Probab=29.11 E-value=1.1e+02 Score=17.16 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Q psy16906 9 KILDVFVDVFVEKCQILVDKLGD 31 (120)
Q Consensus 9 ~~l~~~~~~~~~~~~~l~~~l~~ 31 (120)
.+++.|.|.|.+.-++|-+.+..
T Consensus 4 ~rl~~FLPqm~~ANe~L~~~~aa 26 (112)
T PF15370_consen 4 SRLQAFLPQMKAANEKLEKEIAA 26 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999998865
No 37
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=27.78 E-value=94 Score=15.76 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=11.1
Q ss_pred ChHhHHHHHHHHHHHHHHHHHHHh
Q psy16906 7 HFKILDVFVDVFVEKCQILVDKLG 30 (120)
Q Consensus 7 s~~~l~~~~~~~~~~~~~l~~~l~ 30 (120)
++..++.+..+..+...++.+...
T Consensus 25 ~~~al~~Ltdi~~~yl~~l~~~~~ 48 (77)
T PF07524_consen 25 SPSALDTLTDILQRYLQELGRTAK 48 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 38
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=27.40 E-value=1.1e+02 Score=16.22 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=18.2
Q ss_pred CCCCChHhHHHHHHHHHHHHHHHHHHHhhhcC-CCceehhHHHHHHHHHHH
Q psy16906 3 TPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDII 52 (120)
Q Consensus 3 ~p~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~vd~~~~~~~~~~dvi 52 (120)
+|--+...+++ ..-+.+..++.++.+-+... ....|+...++.++.+.|
T Consensus 10 APkvs~EAv~~-E~eLd~~l~~rv~ei~~~~~~~~~~~l~~V~~~L~~e~i 59 (81)
T PF07830_consen 10 APKVSEEAVKK-EAELDKYLEQRVEEIIEKSSEEENPDLVYVMRTLASEDI 59 (81)
T ss_dssp S----HHHHHH-HHHHHHHHHHHHHHHT----------HHHHHHHHHHTT-
T ss_pred CCCCCHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHhccC
Confidence 45556666665 33334444444433332222 345677666666665543
No 39
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=26.37 E-value=1.8e+02 Score=18.45 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCceehhHHHHHHHHHHHHHHhhccc
Q psy16906 10 ILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60 (120)
Q Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~vd~~~~~~~~~~dvi~~~~fg~~ 60 (120)
.-.++.|.+.+++..+++.++. |..-++...+..+.+.|+..+..+..
T Consensus 24 T~~SL~~yllEE~yEv~dAI~~---~d~~~l~EELGDlLlqVvfha~iaee 71 (204)
T PRK12333 24 THESLRPYLLEEAAEAVDALSE---GDPQELAEELGDVLLQVAFHSVIAEE 71 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999876 56667777777777777666666544
No 40
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=25.30 E-value=1.1e+02 Score=15.83 Aligned_cols=37 Identities=8% Similarity=0.192 Sum_probs=19.0
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHhhhcC--C-CceehhH
Q psy16906 6 FHFKILDVFVDVFVEKCQILVDKLGDKCD--G-KAFDVYP 42 (120)
Q Consensus 6 fs~~~l~~~~~~~~~~~~~l~~~l~~~~~--~-~~vd~~~ 42 (120)
+|+..+..+..+..+.+..+.+.++..+. | ..|++.+
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dD 65 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDD 65 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHH
Confidence 56666666666666666666655554332 2 3455443
No 41
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=24.64 E-value=1.3e+02 Score=16.27 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=29.4
Q ss_pred CChHhHHHHHH-----HHHHHHHHHHHHHhhhcCCC---ceehhHHHHHHHHHHHHHHhhc
Q psy16906 6 FHFKILDVFVD-----VFVEKCQILVDKLGDKCDGK---AFDVYPFITRCAMDIICETAMG 58 (120)
Q Consensus 6 fs~~~l~~~~~-----~~~~~~~~l~~~l~~~~~~~---~vd~~~~~~~~~~dvi~~~~fg 58 (120)
++-..|+.... -+.+.+.+++.+|.... |. .-.+.+.+..+-++.+..-++|
T Consensus 30 l~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~e-g~~Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 30 LRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSE-GKKATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred cchhHHHHHHhhcccccHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHccchHHHHHHhc
Confidence 44455555431 26777888888887643 32 2345555566666665554443
No 42
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=22.96 E-value=1.1e+02 Score=15.01 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=20.7
Q ss_pred CCCChHhHHHHHHHHHHHHHHHHHHHh
Q psy16906 4 PTFHFKILDVFVDVFVEKCQILVDKLG 30 (120)
Q Consensus 4 p~fs~~~l~~~~~~~~~~~~~l~~~l~ 30 (120)
..++++.++.....+.+..+.+++.|.
T Consensus 40 G~l~~k~l~~i~~~i~~~~~~l~~~W~ 66 (66)
T PF13711_consen 40 GFLPRKELRKILEWIEENQEELLEEWN 66 (66)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 346778888888888888888887773
No 43
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=22.60 E-value=1e+02 Score=14.47 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=16.5
Q ss_pred ChHhHHHHHHHHHHHHHHHHHH
Q psy16906 7 HFKILDVFVDVFVEKCQILVDK 28 (120)
Q Consensus 7 s~~~l~~~~~~~~~~~~~l~~~ 28 (120)
+.+.|...+.++..++++++++
T Consensus 25 s~e~l~~iy~~iQ~EAqkl~~C 46 (48)
T PF06377_consen 25 SVESLLHIYKLIQNEAQKLLDC 46 (48)
T ss_pred cHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777788888888888764
No 44
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=22.43 E-value=83 Score=13.28 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=18.0
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHHhh
Q psy16906 6 FHFKILDVFVDVFVEKCQILVDKLGD 31 (120)
Q Consensus 6 fs~~~l~~~~~~~~~~~~~l~~~l~~ 31 (120)
.++.-|..+.+.-.+.+.+.+.++++
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~ 28 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLER 28 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35667777888878888888888765
No 45
>PF09452 Mvb12: ESCRT-I subunit Mvb12; InterPro: IPR019014 The endosomal sorting complex required for transport (ESCRT) complexes play a critical role in receptor down-regulation and retroviral budding. A new component of the ESCRT-I complex was identified [], multivesicular body sorting factor of 12 kDa (Mvb12), which binds to the coiled-coil domain of the ESCRT-I subunit vacuolar protein sorting 23 (Vps23) []. ; PDB: 2P22_D.
Probab=22.11 E-value=73 Score=17.22 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-CCcee
Q psy16906 13 VFVDVFVEKCQILVDKLGDKCD-GKAFD 39 (120)
Q Consensus 13 ~~~~~~~~~~~~l~~~l~~~~~-~~~vd 39 (120)
.+.....++++++++.++.+.. ++.+|
T Consensus 38 em~~~W~~ECd~i~~~~~~hd~~~k~Fd 65 (91)
T PF09452_consen 38 EMFQPWYEECDQIVESCEQHDKSSKEFD 65 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3455566777777777766543 34444
Done!