RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16906
(120 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 128 bits (324), Expect = 9e-37
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKA-FDVYPFITRCAMDIICETAMGI 59
+I F L ++ F EK + LV+ L K DG+ + +T AMDI+ + A G+
Sbjct: 92 VIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGM 151
Query: 60 EINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFK 98
E + ++ +AV + E + P K
Sbjct: 152 ETSMLLGAQKPLSQAVKLMLEGITASRNTLAKFLPGKRK 190
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 112 bits (282), Expect = 1e-30
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGI 59
L V V E + +D+L + + DV + R +D + I
Sbjct: 147 FFMKALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTSNTLFLRI 206
Query: 60 EINAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKY 102
++ V + + ++P ++ FK +
Sbjct: 207 PLDES-----AIVVKIQGYFDAWQALLIKPDIF----FKISWL 240
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 106 bits (266), Expect = 2e-28
Identities = 15/112 (13%), Positives = 41/112 (36%), Gaps = 5/112 (4%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
++ P+F + + + + V+ LV K + +V +TR +D I
Sbjct: 102 ILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYR 161
Query: 61 INAQ-RDSKSDYVRAVYEISELTIVRSLRP----WLWHPLVFKWTKYASTIH 107
N+ RD ++ ++ + + + R + ++ + ++
Sbjct: 162 FNSFYRDQPHPFITSMVRALDEAMNKLQRANPDDPAYDENKRQFQEDIKVMN 213
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 94.3 bits (235), Expect = 4e-24
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
I P F + + + E+ L ++ GK D R A+ + + +
Sbjct: 118 TIQPAFRLDAIPAYGPIMEEEAHALTERWQP---GKTVDATSESFRVAVRVAARCLLRGQ 174
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLW 92
+R A+ + R + P
Sbjct: 175 YMDERA--ERLCVALATVFRGMYRRMVVPLGP 204
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 86.9 bits (216), Expect = 1e-21
Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
+ FV + + + DK D ++ + ++ C+ G +
Sbjct: 102 FLAEELTIAKFQNFVPAIQHEVRKFMAANWDK-DEGEINLLEDCSTMIINTACQCLFGED 160
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPL 95
+ + D+ + + + ++ I ++ + L
Sbjct: 161 LRKRLDA-RRFAQLLAKMESSLIPAAVFLPILLKL 194
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 80.4 bits (199), Expect = 3e-19
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 3/107 (2%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
M+ + V + ++ + + G+ +V+ ++ + G E
Sbjct: 110 MLKSGLNIAHFKQHVSIIEKETKEYFESWGE---SGEKNVFEALSELIILTASHCLHGKE 166
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKYASTIH 107
I +Q + K + A + L WL P + + I
Sbjct: 167 IRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIK 213
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 74.6 bits (184), Expect = 4e-17
Identities = 9/102 (8%), Positives = 27/102 (26%), Gaps = 10/102 (9%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
+ + + ++ + ++ G+ D+ F + +G +
Sbjct: 100 LHNAALRGEQMKGHAATIEDQVRRMIADWGE---AGEIDLLDFFAELTIYTSSACLIGKK 156
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTKY 102
Q D + +Y + R P + +
Sbjct: 157 FRDQLDGR---FAKLYH----ELERGTDPLAYVDPYLPIESF 191
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 74.2 bits (183), Expect = 4e-17
Identities = 8/95 (8%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
+ F K + + + E+ + + G+ D+ + ++ ++ G
Sbjct: 93 ALKDPFLPKNVRGYREAMEEEARAFFGEW----RGEERDLDHEMLALSLRLLGRALFGKP 148
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPL 95
++ + + + ++ P L
Sbjct: 149 LSPSLA------EHALKALDRIMAQTRSPLALLDL 177
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 68.5 bits (168), Expect = 5e-15
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 1 MITPT-FHFKILDVFVDVFVEKCQILVDKLGDKCD-----GKAFDVYPFITRCAMDIICE 54
+ + F+ + + V L + + D+ + R A + I
Sbjct: 113 ALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITN 172
Query: 55 TAMGIEINAQRDSKSD----YVRAVYEISELTIVRS-LRPWLWHPLVFK-WTKY 102
G + + ++ A+Y++ ++ L P L+ K W +
Sbjct: 173 VIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTWKDH 226
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 67.3 bits (165), Expect = 1e-14
Identities = 12/111 (10%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 1 MITPTFH-FKILDVFVDVFVEKCQILVDKLGDKCD--GKAFDVYPFITRCAMDIICETAM 57
+ E ++++ + CD G+ D+Y + + + + IC
Sbjct: 129 AFQKKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKWSFESICLVLY 188
Query: 58 GIEINAQRDSKSD----YVRAVYEISELTIVRSLRPWLWHPLVF--KWTKY 102
+ + ++ A+ + + P H + W +
Sbjct: 189 EKRFGLLQKETEEEALTFITAIKTMMSTFGKMMVTPVELHKRLNTKVWQAH 239
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 63.4 bits (154), Expect = 3e-13
Identities = 11/94 (11%), Positives = 20/94 (21%), Gaps = 6/94 (6%)
Query: 3 TPTFHFKILDVFVDVFVEKCQILVDKLGDKC-DGKAFDVYPFITRCAMDIICETAMGIEI 61
+ F L D L + D A + + G
Sbjct: 144 LFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNP 203
Query: 62 NAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPL 95
+ + ++ +L P L L
Sbjct: 204 ADTK-----LKADAPGLITKWVLFNLHPLLSIGL 232
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 58.3 bits (141), Expect = 2e-11
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQ-ILVDKLGDKC-DGKAFDVYPFITRCAMDIICETAMG 58
+ T + L + +L+ + + F + T G
Sbjct: 113 RMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTLYG 172
Query: 59 IEINAQRDSKSDYVRAVYE--ISELTIVRSLRPWLWHPLVFKWTK 101
IE + R + L P L + K
Sbjct: 173 IEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVGDK 217
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 56.1 bits (136), Expect = 1e-10
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
++ F + LD ++ Q +++ G YP + R D+ MG +
Sbjct: 107 ILYQAFLPRTLDSYLPKMDGIVQGYLEQWGK---ANEVIWYPQLRRMTFDVAATLFMGEK 163
Query: 61 INAQRDSKSDYVRAV 75
++ + +
Sbjct: 164 VSQNPQLFPWFETYI 178
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 46.8 bits (111), Expect = 2e-07
Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 10/101 (9%)
Query: 6 FHFKIL----DVFVDVFVEKCQILVDKLGDKC-DGKAFDVYPFITRCAMDIICETAMGIE 60
F +L + + F L + L + + A +
Sbjct: 125 LLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSN 184
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKWTK 101
+ + + ++ +L P L L + +
Sbjct: 185 PEETK-----LGTSAPTLISSWVLFNLAPTLDLGLPWFLQE 220
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 45.3 bits (108), Expect = 7e-07
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 19 VEKCQILVDKLGDKCD-GKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRAVYE 77
+ +LV L + + GK + +MD+I T+ G+ I++ + + +V +
Sbjct: 128 AQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKK 187
Query: 78 ISELTIVRSLR 88
+ +
Sbjct: 188 LLRFDFLDPFF 198
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 40.0 bits (94), Expect = 4e-05
Identities = 4/66 (6%), Positives = 14/66 (21%), Gaps = 3/66 (4%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
+ ++ E+ + V + ++ + C A
Sbjct: 98 LFLSLMTPPHQKRLAELMTEEWKAAVTRWEK---ADEVVLFEEAKEILCRVACYWAGVPL 154
Query: 61 INAQRD 66
+
Sbjct: 155 KETEVK 160
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 40.1 bits (94), Expect = 4e-05
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 1 MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
M + + +F + + V Y + +C A
Sbjct: 97 MFMGLMTPERVRALAQLFEAEWRRAVPGWTR---KGEIVFYDELHEPLTRAVCAWAGVPL 153
Query: 61 INAQRDSKSDYVRAVYEISELTIVRSLRPWL 91
+ + +++ +RA+++ + R L L
Sbjct: 154 PDDEAGNRAGELRALFDAAGSASPRHLWSRL 184
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 29.4 bits (67), Expect = 0.21
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 53
++ L D L +G++ D+ + ++I
Sbjct: 130 QEISTLCDML-ATHNGQSIDISFPVFVAVTNVIS 162
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 29.1 bits (66), Expect = 0.34
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMG 58
E+ L+D L G D F++R ++I G
Sbjct: 129 EEAGFLIDAL-RGTGGANIDPTFFLSRTVSNVISSIVFG 166
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 29.1 bits (66), Expect = 0.35
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMG 58
E+ + LV++L K G D +IIC G
Sbjct: 129 EEARCLVEEL-RKSKGALLDNTLLFHSITSNIICSIVFG 166
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 29.1 bits (66), Expect = 0.36
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMG 58
E+ L G+ F + + ++I G
Sbjct: 133 EEAACLCAAF-ANHSGRPFRPNGLLDKAVSNVIASLTCG 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.1 bits (64), Expect = 0.36
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 34/131 (25%)
Query: 6 FHFK-ILDVFVDVFVE--KCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEIN 62
+ +K IL VF D FV+ C+ + D +++ +D I +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMP-----------KSILSKEEIDHIIMS------- 57
Query: 63 AQRDSKSDYVRAVYEISELTIVR-----SLRP---WLWHPL--VFKWTKYASTIHLPCRV 112
S + + + +V+ LR +L P+ + + +++ R
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 113 P---SNSVFSK 120
N VF+K
Sbjct: 118 RLYNDNQVFAK 128
Score = 27.5 bits (60), Expect = 1.4
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 5/22 (22%)
Query: 10 ILD-V----FVDVFVEKCQILV 26
+L V + F C+IL+
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILL 270
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 28.7 bits (65), Expect = 0.43
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMG 58
+ L++ L K G+ FD I ++I +
Sbjct: 128 REAHFLLEAL-RKTQGQPFDPTFLIGCAPCNVIADILFR 165
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 28.0 bits (63), Expect = 0.69
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 53
+ Q +++ G + + IIC
Sbjct: 142 QLTQEFCERM-RVQAGAPVTIQKEFSLLTCSIIC 174
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 27.9 bits (63), Expect = 0.77
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 53
E+ + D + + G+ FD IT +I
Sbjct: 134 EETKFFNDAI-ETYKGRPFDFKQLITNAVSNITN 166
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 27.9 bits (63), Expect = 0.90
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 20 EKCQILVDKLGDKCDGKAFDVYPFITRCAMDIIC 53
E+ + LV++L K D + ++IC
Sbjct: 130 EEARCLVEEL-RKTKASPCDPTFILGCAPCNVIC 162
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 27.6 bits (62), Expect = 0.95
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 20 EKCQILVDKLGDKC-DGKAFDVYPFITRCAMDIICETAMG 58
+ + LV L DG D P +++ G
Sbjct: 132 SEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFG 171
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 3.0
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 15/40 (37%)
Query: 57 MGIEINAQRDSKSDYVRAV-----------YEISELTIVR 85
MG+++ + S + V Y S L IV
Sbjct: 1631 MGMDL---YKT-SKAAQDVWNRADNHFKDTYGFSILDIVI 1666
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 4.1
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 19/46 (41%)
Query: 20 EKCQILVDKLGDKCDGKAFDVY-PFITRCAMDIICETAMGIEINAQ 64
EK + K K + +Y ++A + I A
Sbjct: 18 EKQAL---K---KLQA-SLKLYAD-----------DSAPALAIKAT 45
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor
complex; 2.50A {Pseudomonas aeruginosa} PDB: 4fgi_B
Length = 192
Score = 25.5 bits (55), Expect = 4.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 28 KLGDKCDGKAFDVYPFITRCAMDIICETA 56
+LG KC G++ D I + ++ C+TA
Sbjct: 162 RLGQKCSGESVDSCAKIVKRSLAPFCQTA 190
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 25.3 bits (56), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 20 EKCQILVDKLG-DKC-DGKAFDV 40
EKC +L +LG D + K +V
Sbjct: 197 EKCILLTSELGFDAAINYKKDNV 219
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase,
nucleus, phosphoprotein, PR proteasome, threonine
protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 25.5 bits (55), Expect = 6.1
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 15 VDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEINAQRDSKSDYVRA 74
+E + D LG V +I + I + +N Q+ K+DY
Sbjct: 674 PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYR 733
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 24.8 bits (55), Expect = 8.7
Identities = 6/15 (40%), Positives = 7/15 (46%), Gaps = 1/15 (6%)
Query: 20 EKCQILVDKLG-DKC 33
EK +L K G D
Sbjct: 191 EKVDLLKTKFGFDDA 205
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot,
hormone-growth factor complex; HET: NAG; 2.42A {Homo
sapiens} SCOP: g.17.1.7
Length = 206
Score = 24.7 bits (53), Expect = 8.8
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 54 ETAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKW 99
AM EI S+ +S+ + R L+ WLW P+++ W
Sbjct: 87 SGAMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAW 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.457
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,907,618
Number of extensions: 99931
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 39
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.0 bits)