RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16906
         (120 letters)



>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 463

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 13/99 (13%), Positives = 27/99 (27%)

Query: 1   MITPTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIE 60
            +    +F       +  + +     +   +   G+ FD    IT    +I      G  
Sbjct: 101 AVNSFRYFGYGQKSFESKILEETKFFNDAIETYKGRPFDFKQLITNAVSNITNLIIFGER 160

Query: 61  INAQRDSKSDYVRAVYEISELTIVRSLRPWLWHPLVFKW 99
              +       +    E  EL    S+  +   P +   
Sbjct: 161 FTYEDTDFQHMIELFSENVELAASASVFLYNAFPWIGIL 199


>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
          [TaxId: 562]}
          Length = 223

 Score = 26.5 bits (57), Expect = 0.75
 Identities = 18/83 (21%), Positives = 31/83 (37%)

Query: 4  PTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMDIICETAMGIEINA 63
            F FK  D++V   V+    +  +L    + K  D    I       +     GI I  
Sbjct: 11 VPFEFKQGDLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITD 70

Query: 64 QRDSKSDYVRAVYEISELTIVRS 86
          +R    D+    Y+   L +V++
Sbjct: 71 ERKKAIDFSDGYYKSGLLVMVKA 93


>d1m4ua_ g.17.1.7 (A:) Noggin {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 49  MDIICETAMGIEINAQRDSKSDYVRAVYEISELTIVRSLRPWLWH----PLVFKW 99
           +      AM  EI     S+         +S+  + R L+ WLW     P+++ W
Sbjct: 82  LRQRPSGAMPSEIKGLEFSEGLAQGKKQRLSK-KLRRKLQMWLWSQTFCPVLYAW 135


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 25.5 bits (55), Expect = 1.9
 Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 4   PTFHFKILDVFVDVFVEKCQILVDKLGDKCDGKAFDVYPFITRCAMD-IICETAMGIEIN 62
           P     +LD             V+KL  +    A        +   +  I   A  +  N
Sbjct: 455 PPGVLALLDEECWFPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYN 514

Query: 63  AQ------RDSKSDYVRAVYEISELTIVRSL 87
           A        D  +D V ++   S    V  L
Sbjct: 515 ASAWLTKNMDPLNDNVTSLLNQSSDKFVADL 545


>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG,
          phenylalanine-repressible {Mycobacterium tuberculosis
          [TaxId: 1773]}
          Length = 462

 Score = 24.1 bits (52), Expect = 5.4
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 17 VFVEKCQILVDKLGDKCDGKAF 38
              +   L ++L     G+AF
Sbjct: 59 TVPSEIVRLQEQLAQVAKGEAF 80


>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase
          {Streptomyces hydrogenans [TaxId: 1905]}
          Length = 254

 Score = 23.4 bits (50), Expect = 8.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 13 VFVDVFVEKCQILVDKLGDKCDGKAFDV 40
          V  DV  E+      +LGD    +  DV
Sbjct: 33 VLADVLDEEGAATARELGDAARYQHLDV 60


>d1txka2 b.30.5.9 (A:23-396) Glucans biosynthesis protein G (MdoG,
           OpgG), N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 374

 Score = 23.5 bits (51), Expect = 8.9
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 64  QRDSKSDYVRAVYEISELTIVRSLRPWLWHPL 95
           Q    ++Y   +++ + L+I      W+W PL
Sbjct: 238 QPSPANNYRPELHDSNGLSIHAGNGEWIWRPL 269


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.457 

Gapped
Lambda     K      H
   0.267   0.0393    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 485,204
Number of extensions: 20169
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.8 bits)