RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16910
(82 letters)
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 46.8 bits (110), Expect = 6e-08
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV 62
+GDRHL+N L+ TKTG+ IDFGY G P P P +L ++
Sbjct: 476 VGDRHLDNLLL-TKTGKLFHIDFGYILGRD----PKPLPPPMKLNKEMVEG 521
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 46.0 bits (108), Expect = 1e-07
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAVNEPYGSQE 70
IGDRH +N ++ ++G+ IDFG+ G I E +PF LT + V + +
Sbjct: 787 IGDRHSDNIMI-RESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNN 845
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 45.6 bits (107), Expect = 2e-07
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAV 62
+GDRHL+N L+ T G+ IDFGY G P P P +L+ ++
Sbjct: 550 VGDRHLDNLLL-TTNGKLFHIDFGYILGRD----PKPMPPPMKLSKEMVEA 595
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 45.6 bits (107), Expect = 2e-07
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAV 62
IGDRH +N ++ ++TG IDFG+ G L I E +PF LTP L V
Sbjct: 803 IGDRHNDNIMI-SETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFV 853
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 45.3 bits (106), Expect = 3e-07
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPIP-ELMPFRLTPHILAVNEPYGSQE 70
IGDRH +N +V KTG+ IDFG+ G I E +PF LT + V + +
Sbjct: 939 IGDRHSDNIMV-KKTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGN 997
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1,
phosphatidilynositol 3,4,5- triphosphate, wortmannin,
H1047R, ATP-binding, disease mutation, kinase; HET: KWT;
2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 43.7 bits (102), Expect = 8e-07
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 12 IGDRHLENTLVCTKTGRCVGIDFGYSFGVA-TQLLPIPELMPFRLTPHILAV 62
IGDRH N +V G+ IDFG+ + E +PF LT L V
Sbjct: 936 IGDRHNSNIMV-KDDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIV 986
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 31.9 bits (72), Expect = 0.013
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 6 LLLEYSIG-DRHLENTLVCTKTGRCVGI---DFGYSFGVATQLLPIPELMPFRLTPHILA 61
L++E+ I + H +N ++ K G V I DF L P H
Sbjct: 428 LVVEHGIALESHGQNMILVHKEGLPVRIALKDFHEGLEFYRPFLKEMNKCPDFTKMHKTY 487
Query: 62 VNEPYGSQEVALSSEVGFQ 80
N E +
Sbjct: 488 ANGKMNDFFEMDRIECLQE 506
>2x0q_A ALCC, alcaligin biosynthesis protein; adenylation, siderophores,
iron ACQU biosynthetic protein; HET: ATP; 1.96A
{Bordetella bronchiseptica} PDB: 2x0o_A* 2x0p_A*
Length = 618
Score = 28.4 bits (63), Expect = 0.21
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 6 LLLEYSIG-DRHLENTLVCTKTGRCVGI---DFGYSFGVATQLLPIPELMP 52
+ + H EN ++ + G V D + + +P+
Sbjct: 438 CFYAHDLVFMPHGENVILVIQDGVPVRAFMKDIAEESSILNPQVRLPQAAQ 488
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase,
aminoglycoside, phosphorylation, transferase-antibiotic
complex; HET: TOY; 1.80A {Enterococcus casseliflavus}
PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A*
3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A*
4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Length = 304
Score = 27.9 bits (62), Expect = 0.31
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 13 GDRHLENTLVCTKTGRCVG-IDFG 35
D ++ L T+ G IDFG
Sbjct: 196 NDFSSDHILFDTEKNTICGIIDFG 219
>2fuj_A Conserved hypothetical protein; structural genomics, conserved
hypot protein, hot DOG domain, acyl-COA thioesterase,
hydrolase; 1.70A {Xanthomonas campestris PV} SCOP:
d.38.1.1
Length = 137
Score = 24.2 bits (53), Expect = 4.9
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 1 MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDF 34
+ +SS+ + + I D+ E L V ID
Sbjct: 87 LGSSSVTIGHRILDQKDEGVLYSDGNVVVVWIDT 120
>2ali_A Hypothetical protein PA2801; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.75A {Pseudomonas aeruginosa} SCOP:
d.38.1.1 PDB: 3qy3_A
Length = 158
Score = 23.9 bits (52), Expect = 6.9
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 1 MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDFGYSFGVATQ-LLPIPE 49
+ SSL+LE+ + + V + A P+P+
Sbjct: 106 LGTSSLVLEHRLHTLEDPQGTYGEGHCKLVWVRH------AENRSTPVPD 149
>2x3j_A ACSD; alcaligin biosynthesis, ligase, ALCC, adenylation, sideropho
iron acquisition; HET: ATP X3J; 2.00A {Erwinia
chrysanthemi} PDB: 2w03_A* 2w04_A* 2w02_A* 2x3k_A*
3ffe_A
Length = 620
Score = 23.9 bits (51), Expect = 9.9
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 6 LLLEYSIG-DRHLENTLVCTKTGRCVGI---DFG-----YSFGVATQLLPIPELMPFRLT 56
L + + + HL+N+++ + GR + DF G+ I + L
Sbjct: 433 LFFNHGVVMEPHLQNSVLVHQQGRPQQVLLRDFEGVKLTDDLGIRYIDDDIHPRVRQSLL 492
Query: 57 PHILAVNE 64
Sbjct: 493 YSREQGWN 500
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0560 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,161,453
Number of extensions: 54651
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 12
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)