RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16910
         (82 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 53.5 bits (128), Expect = 1e-10
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 12  IGDRHLENTLVCTKTGRCVGIDFGYSFGVATQLLPI-PELMPFRLTPHILAVNEPYGSQE 70
           IGDRH +N ++  +TG    IDFG+  G     L I  E +PF LTP  L V    G + 
Sbjct: 219 IGDRHNDNIMIS-ETGNLFHIDFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKT 277


>d2v4ja2 d.58.36.2 (A:2-167) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 166

 Score = 28.6 bits (64), Expect = 0.062
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 25  KTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 67
           K G  VG+ FGY  GV  +    PE  P     H + V +P G
Sbjct: 65  KHGGIVGV-FGYGGGVIGRYCDQPEKFPGVAHFHTVRVAQPSG 106


>d3c7ba2 d.58.36.2 (A:1-166) Dissimilatory sulfite reductase subunit
           alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 166

 Score = 28.2 bits (63), Expect = 0.077
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 25  KTGRCVGIDFGYSFGVATQLLPIPELMPFRLTPHILAVNEPYG 67
           K G  V +  GY  GV  +   + E +P     H + +N+P G
Sbjct: 63  KHGGIVSV-VGYGGGVIGRYSDLGEQIPEVEHFHTMRINQPSG 104


>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX)
          {Escherichia coli [TaxId: 562]}
          Length = 138

 Score = 23.5 bits (50), Expect = 3.1
 Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)

Query: 26 TGRCVGIDFG-YSFGVA 41
          +G  +  DFG  S GVA
Sbjct: 2  SGTLMAFDFGTKSIGVA 18


>d2ciwa2 a.39.3.1 (A:120-298) Cloroperoxidase {Fungus (Caldariomyces
           fumago) [TaxId: 5474]}
          Length = 179

 Score = 23.6 bits (50), Expect = 3.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 47  IPELMPFRLTPHILAVNEPYGSQEVAL 73
           +P      +TP +LA N PY +Q+  L
Sbjct: 149 VPLSFASTMTPFLLATNAPYYAQDPTL 175


>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147
           {Xanthomonas campestris pv. campestris [TaxId: 340]}
          Length = 118

 Score = 23.5 bits (50), Expect = 3.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 1   MNNSSLLLEYSIGDRHLENTLVCTKTGRCVGIDF 34
           + +SS+ + + I D+  E  L        V ID 
Sbjct: 80  LGSSSVTIGHRILDQKDEGVLYSDGNVVVVWIDT 113


>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
          {Escherichia coli [TaxId: 562]}
          Length = 152

 Score = 22.9 bits (49), Expect = 6.3
 Identities = 7/27 (25%), Positives = 11/27 (40%)

Query: 15 RHLENTLVCTKTGRCVGIDFGYSFGVA 41
          R++   +V         I   Y+ GVA
Sbjct: 48 RYVAKNIVAAGLADRCEIQVSYAIGVA 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.410 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,192
Number of extensions: 10232
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 8
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)