BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16911
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|B Chain B, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|C Chain C, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
Length = 209
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 113/201 (56%), Gaps = 11/201 (5%)
Query: 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLDGPEVSLEKTVGSEKIEIHFNVNHS 60
+K +FLS+EI+ E+KIQK K++P G++++L+G E L + V EKI + FN+N+S
Sbjct: 6 DKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNS 65
Query: 61 V----DADAEPQIDPNMDEPEIEMKSKPSFEVNFIK---GNKTLGFTCSFIPPESEPSED 113
+ D + EP ++E E E+ S P+F V IK G K L C + E ++
Sbjct: 66 IPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDE 125
Query: 114 GYNDLFSIDEV---DTYERENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLS 170
+D+FSI EV T E E K T + LD LYD LM++L ++G+ N F D+L
Sbjct: 126 AESDIFSIREVSFQSTGESE-WKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELV 184
Query: 171 NLSTGYEHASYINLLSEIQKF 191
LST EH YI L +++ F
Sbjct: 185 ELSTALEHQEYITFLEDLKSF 205
>pdb|3RPX|A Chain A, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|B Chain B, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|C Chain C, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
Length = 194
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 11/184 (5%)
Query: 18 IQKSKSIPSEIDGFQVKLDGPEVSLEKTVGSEKIEIHFNVNHSV----DADAEPQIDPNM 73
IQK K++P G++++L+G E L + V EKI + FN+N+S+ D + EP +
Sbjct: 1 IQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKV 60
Query: 74 DEPEIEMKSKPSFEVNFIK---GNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVD---TY 127
+E E E+ S P+F V IK G K L C + E ++ +D+FSI EV T
Sbjct: 61 EEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTG 120
Query: 128 ERENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSE 187
E E K T + LD LYD LM++L ++G+ N F D+L LST EH YI L +
Sbjct: 121 ESE-WKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLED 179
Query: 188 IQKF 191
++ F
Sbjct: 180 LKSF 183
>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein
Length = 182
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 144 LDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTS 193
L+ L D +YL +G+++ + + S E A Y LS I KF S
Sbjct: 133 LEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182
>pdb|1W36|B Chain B, Recbcd:dna Complex
pdb|1W36|E Chain E, Recbcd:dna Complex
pdb|3K70|B Chain B, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
pdb|3K70|E Chain E, Crystal Structure Of The Complete Initiation Complex Of
Recbcd
Length = 1180
Score = 30.4 bits (67), Expect = 0.68, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 129 RENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFV 166
R N IACL E D PLY+ L+ +++K + +++
Sbjct: 77 RSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWL 114
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 144 LDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKF 191
LD L + L YLE +G++ E +S S E+ YI+ L +++KF
Sbjct: 178 LDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKF 225
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 142 EVLDGPL-----YDLL---MNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTS 193
E+ GPL YDLL M YLE++G+ + + + S E Y L+ + KF S
Sbjct: 144 ELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203
>pdb|2YWV|A Chain A, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
pdb|2YWV|B Chain B, Crystal Structure Of Saicar Synthetase From Geobacillus
Kaustophilus
Length = 244
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 117 DLFSIDEVDTYERENG-KTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLS 170
D+ ++ D+ NG K TIA + L+ + LL L E GI+N F++KLS
Sbjct: 25 DVLWVEYKDSATAFNGEKKATIAG-KGRLNNEISSLLFLKLREAGIANHFIEKLS 78
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 124 VDTYER---ENGKTTTIACLEEVLDGPLYDLLMNYLEEKGI 161
VDT +R E+G+ + DG +D+L+N +E+ G+
Sbjct: 118 VDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGV 158
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 124 VDTYER---ENGKTTTIACLEEVLDGPLYDLLMNYLEEKGI 161
VDT +R E+G+ + DG +D+L+N +E+ G+
Sbjct: 118 VDTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,082,295
Number of Sequences: 62578
Number of extensions: 268502
Number of successful extensions: 486
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 14
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.5 bits)