Query psy16911
Match_columns 194
No_of_seqs 103 out of 247
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 16:50:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p32_A Mitochondrial matrix pr 100.0 2.8E-54 9.6E-59 357.0 23.2 193 1-194 6-208 (209)
2 3jv1_A P22 protein; MAM33 fami 100.0 4.5E-51 1.5E-55 331.4 17.3 165 1-193 4-182 (182)
3 1yqf_A Hypothetical protein LM 100.0 1.8E-48 6E-53 321.0 18.6 165 1-193 24-203 (203)
4 3qv0_A Mitochondrial acidic pr 100.0 1.7E-46 5.9E-51 312.8 12.7 183 2-193 12-227 (227)
5 1t5q_A Gastric inhibitory poly 74.0 3.8 0.00013 23.0 3.2 24 164-187 5-28 (30)
6 1jrj_A Exendin-4; Trp-CAGE, GL 66.8 3.8 0.00013 24.4 2.2 24 165-188 6-29 (39)
7 3c5t_B Exendin-4, exenatide; l 62.9 5.8 0.0002 22.4 2.4 20 170-189 3-22 (31)
8 2g49_C Glucagon preproprotein; 62.8 6.1 0.00021 21.9 2.5 23 165-187 6-28 (29)
9 2l63_A GLP-2, glucagon-like pe 61.3 4.7 0.00016 23.1 1.9 23 165-187 6-28 (33)
10 3vcf_A Probable integrase; cat 57.3 15 0.0005 28.5 4.7 46 143-188 103-163 (163)
11 3iol_B Glucagon; receptor-liga 55.5 7.8 0.00027 21.7 2.1 23 165-187 6-28 (31)
12 1ci4_A Protein (barrier-TO-aut 48.2 19 0.00064 25.2 3.6 33 153-188 31-66 (89)
13 2k9i_A Plasmid PRN1, complete 38.9 51 0.0017 19.5 4.3 29 143-173 15-43 (55)
14 2rrh_A VIP peptides; peptide h 38.9 48 0.0017 18.1 4.1 20 168-187 6-28 (29)
15 2ouf_A Hypothetical protein; s 34.9 89 0.003 21.9 5.4 41 148-188 40-89 (94)
16 2b4n_A Gastric inhibitory poly 33.4 4.9 0.00017 24.3 -1.2 22 168-189 9-30 (42)
17 2z2v_A Hypothetical protein PH 27.7 37 0.0013 28.9 3.0 33 128-162 328-361 (365)
18 2lep_A Rhomboid protease GLPG 32.9 13 0.00046 24.3 0.0 21 146-166 10-30 (69)
19 2i9x_A Putative septation prot 26.0 96 0.0033 21.3 4.3 34 87-130 8-43 (87)
20 2i9z_A Putative septation prot 25.5 96 0.0033 22.1 4.4 34 87-130 8-43 (105)
21 3fiq_A OBP1, RCG36470, odorant 25.2 96 0.0033 22.7 4.6 27 139-165 119-145 (157)
22 2ia9_A Putative septation prot 24.9 99 0.0034 21.8 4.3 34 87-130 8-43 (100)
23 2zop_A Putative uncharacterize 23.1 1E+02 0.0036 21.9 4.3 24 146-170 60-83 (114)
24 3mlg_A Putative uncharacterize 23.0 1.5E+02 0.0051 23.4 5.4 41 148-188 40-89 (189)
25 2wvi_A Mitotic checkpoint seri 22.6 43 0.0015 25.7 2.2 30 150-179 80-109 (164)
26 1dtc_A Acetyl-delta-toxin; NMR 21.9 56 0.0019 17.3 1.8 15 180-194 11-26 (26)
27 2k6x_A Sigma-A, RNA polymerase 21.7 93 0.0032 20.1 3.5 19 144-162 40-58 (72)
28 3mlg_A Putative uncharacterize 21.7 1.5E+02 0.0052 23.3 5.2 42 148-189 129-179 (189)
29 1e5p_A Aphrodisin; lipocalin, 20.8 79 0.0027 22.6 3.3 25 140-164 114-138 (151)
30 2cpg_A REPA protein, transcrip 20.0 55 0.0019 18.6 1.9 21 143-163 8-28 (45)
No 1
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=100.00 E-value=2.8e-54 Score=356.96 Aligned_cols=193 Identities=36% Similarity=0.624 Sum_probs=157.9
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEEeCCCEEEEEEeeCCeEEEEEEEeCCCCCCCCCC--CCCCCCC--Cc
Q psy16911 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLDGPEVSLEKTVGSEKIEIHFNVNHSVDADAEP--QIDPNMD--EP 76 (194)
Q Consensus 1 ~~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~v~~~g~~v~L~r~~~~E~I~V~f~v~~~~~~~~~~--e~~~~~~--~~ 76 (194)
+++|+++|++||++|++++.+..+|+.++||+|+.+|++|+|+|+||+|+|+|+|++++++++...+ +.+.+++ +.
T Consensus 6 d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~F~v~~~g~~v~L~r~~~~E~I~V~f~v~~~~~~~~~~~~e~~~~~~~~ee 85 (209)
T 1p32_A 6 DKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNSIPPTFDGEEEPSQGQKVEEQ 85 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCCCCTTCCEEEEETTEEEEEEEETTEEEEEEEECTTCCC------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCCCCCcEEEECCCEEEEEEecCCcEEEEEEEccCCCCcccccccccccccccccc
Confidence 4789999999999999998777788888999999778999999999999999999999877653211 1111111 11
Q ss_pred ccccCCCCceEEEEEeC---CceEEEEEEecCCCCCCCCCCCCCceEEeeeeee---cCCCCCcccccCCCCCCCHHHHH
Q psy16911 77 EIEMKSKPSFEVNFIKG---NKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTY---ERENGKTTTIACLEEVLDGPLYD 150 (194)
Q Consensus 77 e~~~~~~~~f~V~I~K~---~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~---e~~~~~~~~Y~g~~~~LDe~Lq~ 150 (194)
+.+++++|+|+|+|+|+ +++|.|+|++++++..+++++.++.|.|++|+++ +++|+++ .|.|+|++||++||+
T Consensus 86 ~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e~~~~~~-~Y~g~f~~LDe~Lq~ 164 (209)
T 1p32_A 86 EPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDT-NYTLNTDSLDWALYD 164 (209)
T ss_dssp ---CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTT-SCEEESTTCCHHHHH
T ss_pred cccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcccccccc-ccccccccCCHHHHH
Confidence 23667899999999995 4799999999998732234456788999999999 5779887 899999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Q psy16911 151 LLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTSQ 194 (194)
Q Consensus 151 ~~~~yLeeRGId~ela~fl~~y~~~kEq~EYi~wL~~vk~Fv~~ 194 (194)
+|++||++||||++||+||++||++|||++||+||++|++||++
T Consensus 165 ~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~ 208 (209)
T 1p32_A 165 HLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKS 208 (209)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999974
No 2
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=100.00 E-value=4.5e-51 Score=331.38 Aligned_cols=165 Identities=22% Similarity=0.305 Sum_probs=147.1
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEE-e-CCCEEEEEEeeCCeEEEEEEEeCCCCCCCCCCCCCCCCCCccc
Q psy16911 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVK-L-DGPEVSLEKTVGSEKIEIHFNVNHSVDADAEPQIDPNMDEPEI 78 (194)
Q Consensus 1 ~~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~v~-~-~g~~v~L~r~~~~E~I~V~f~v~~~~~~~~~~e~~~~~~~~e~ 78 (194)
|++|+++|++||++|++++.++..|+...||+|. . |+++|+|+|+||+|+|+|+|++++. +
T Consensus 4 d~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~i~d~pG~~~v~L~r~~~~E~I~V~f~~~~e---d-------------- 66 (182)
T 3jv1_A 4 DQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGVTHFTMRKSHGDEEIILQLTGEDR---S-------------- 66 (182)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCCCCCCCTTCEEECCTTCCSCEEEEEETTEEEEEEEEEECS---S--------------
T ss_pred hHHHHHHHHHHHHHHHhcccccCCCCCCCCCEEEecCCCcEEEEEEEeCCcEEEEEEecCCc---c--------------
Confidence 4789999999999999998776777777899998 3 4589999999999999999999951 0
Q ss_pred ccCCCCceEEEEEeCCceEEEEEEecCCCCCCCCCCCCCceEEeeeeeec-----------CCCCCcccccCC-CCCCCH
Q psy16911 79 EMKSKPSFEVNFIKGNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTYE-----------RENGKTTTIACL-EEVLDG 146 (194)
Q Consensus 79 ~~~~~~~f~V~I~K~~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~e-----------~~~~~~~~Y~g~-~~~LDe 146 (194)
+..+.++|+|.|+||+++|.|+|++++ +.|.|++|+++. ++|.++..|.|| |++||+
T Consensus 67 d~~~~~~~~V~I~K~~~~L~f~c~~~~-----------~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe 135 (182)
T 3jv1_A 67 NEEITRTLDVLVVNGGKALVFGMSVED-----------GEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLED 135 (182)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEEEET-----------TEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCH
T ss_pred ccccCccEEEEEEECCcEEEEEEEecC-----------CEEEEEEEEEeccchhhccccccccccccccccCCCccccCH
Confidence 013678999999998899999999965 359999999983 457777799996 999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Q psy16911 147 PLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTS 193 (194)
Q Consensus 147 ~Lq~~~~~yLeeRGId~ela~fl~~y~~~kEq~EYi~wL~~vk~Fv~ 193 (194)
+||++|++||++||||++||+||++||++|||+||++||++|++||+
T Consensus 136 ~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs 182 (182)
T 3jv1_A 136 HLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182 (182)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999985
No 3
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=100.00 E-value=1.8e-48 Score=321.00 Aligned_cols=165 Identities=20% Similarity=0.283 Sum_probs=142.2
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCcEEE-e-CCCEEEEEEeeCCeEEEEEEEeCCCCCCCCCCCCCCCCCCccc
Q psy16911 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVK-L-DGPEVSLEKTVGSEKIEIHFNVNHSVDADAEPQIDPNMDEPEI 78 (194)
Q Consensus 1 ~~~L~~~L~~EI~~E~~~~~~~~~p~~~~~f~v~-~-~g~~v~L~r~~~~E~I~V~f~v~~~~~~~~~~e~~~~~~~~e~ 78 (194)
+++|+++|++||++|++++..+..|+.++||+|. . |+++|+|+|+||+|+|+|.|++++.++. + +
T Consensus 24 d~~L~~~L~~EI~~E~~~~~~~~~~~~p~~F~i~d~pG~~~v~L~R~~~~E~I~V~f~~~~~~~~----------d--e- 90 (203)
T 1yqf_A 24 DAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTNQDSDK----------A--N- 90 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCCCCCCTTCEEEECTTSSEEEEEEEETTEEEEEEEESCCCSSC----------S--S-
T ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCCCCCcEEEecCCCcEEEEEEecCCeEEEEEEEcCCCCCC----------C--C-
Confidence 4689999999999999987533333344699998 3 4589999999999999999999976531 0 1
Q ss_pred ccCCCCceEEEEEe-CCceEEEEEEecCCCCCCCCCCCCCceEEeeeeee-----------cCCCCCcccccCC-CCCCC
Q psy16911 79 EMKSKPSFEVNFIK-GNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTY-----------ERENGKTTTIACL-EEVLD 145 (194)
Q Consensus 79 ~~~~~~~f~V~I~K-~~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~-----------e~~~~~~~~Y~g~-~~~LD 145 (194)
.+ +|+|+|+| ++++|.|+|++++ +.|.|++|+++ +++|.++..|.|| |++||
T Consensus 91 --~s--~~~V~I~K~~~~~L~f~C~~~~-----------~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LD 155 (203)
T 1yqf_A 91 --SH--NIFVYITQKNGQTMQADLSIEE-----------GELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELD 155 (203)
T ss_dssp --CE--EEEEEEECTTSCEEEEEEEEET-----------TEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSB
T ss_pred --cc--eEEEEEEeCCCCEEEEEEEecC-----------CEEEEEEEEEeccccccccccccccccccccccCCCcccCC
Confidence 13 99999999 5799999999965 34999999998 3567776799996 89999
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Q psy16911 146 GPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTS 193 (194)
Q Consensus 146 e~Lq~~~~~yLeeRGId~ela~fl~~y~~~kEq~EYi~wL~~vk~Fv~ 193 (194)
++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus 156 e~Lq~~l~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~ 203 (203)
T 1yqf_A 156 YDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203 (203)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999985
No 4
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-46 Score=312.76 Aligned_cols=183 Identities=20% Similarity=0.296 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCC------CCcEEE-eCC-CEE-EEEEeeCCeEEEEEEEeCCCCCCCCCC----C
Q psy16911 2 KELFEFLSEEIQAEKKIQKSKSIPSEI------DGFQVK-LDG-PEV-SLEKTVGSEKIEIHFNVNHSVDADAEP----Q 68 (194)
Q Consensus 2 ~~L~~~L~~EI~~E~~~~~~~~~p~~~------~~f~v~-~~g-~~v-~L~r~~~~E~I~V~f~v~~~~~~~~~~----e 68 (194)
..|+++|++||++|+++.+....|+.+ .+|+|. ++| .+| .|+|+||+|+|+|.|+|++..+.+.++ +
T Consensus 12 ~~l~~~L~~Ei~~E~~~~~~e~~p~~~~~Fl~~~~f~i~d~~G~~~V~llkr~~g~EkI~V~F~i~d~~~~p~e~~~~e~ 91 (227)
T 3qv0_A 12 QRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGKNEAEIVRRTESGETVHVFFDVAQIANLPYNNAMDEN 91 (227)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHTTCEEECCTTCSEEEEEEECTTSCEEEEEEEHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhccccccCchHHHHHHhcCCcEEEecCCCceEEEEEeecCCcEEEEEEEccccccCCcccccccc
Confidence 469999999999999987665556533 789987 666 688 789999999999999998643321111 1
Q ss_pred CCC---CCCCcc-cccCC-CCceEEEEEeCC---ceEEEEEEecCCCCCCCCCCCCCceEEeeeeee-----------cC
Q psy16911 69 IDP---NMDEPE-IEMKS-KPSFEVNFIKGN---KTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTY-----------ER 129 (194)
Q Consensus 69 ~~~---~~~~~e-~~~~~-~~~f~V~I~K~~---~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~-----------e~ 129 (194)
.++ .+++++ .++.+ .++|+|+|+|++ ++|.|+|++... ++.|.|++|+++ ++
T Consensus 92 ~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~~~---------eg~f~Id~V~~~~d~~~a~~~s~e~ 162 (227)
T 3qv0_A 92 TEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMNLQ---------EGSFYVDSATPYPSVDAALNQSAEA 162 (227)
T ss_dssp -------------------CEEEEEEEEC---CCCEEEEEEEEETT---------TTEEEEEEEEEESSHHHHHCCSHHH
T ss_pred cccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEeecC---------CCcEEEEEEEEecchHhhhcccccc
Confidence 000 001111 12223 368999999964 899999995321 345999999998 35
Q ss_pred CCCCcccccCC-CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhc
Q psy16911 130 ENGKTTTIACL-EEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKFTS 193 (194)
Q Consensus 130 ~~~~~~~Y~g~-~~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~kEq~EYi~wL~~vk~Fv~ 193 (194)
+|+|+..|.|| |++||++||++|++||++||||++||+||++||.+|||++|++||++|++||+
T Consensus 163 ~~~r~~~Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~ 227 (227)
T 3qv0_A 163 EITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH 227 (227)
T ss_dssp HHHHHHSCCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78888899996 99999999999999999999999999999999999999999999999999984
No 5
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=74.00 E-value=3.8 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy16911 164 EFVDKLSNLSTGYEHASYINLLSE 187 (194)
Q Consensus 164 ela~fl~~y~~~kEq~EYi~wL~~ 187 (194)
.|.+-.+.|....-.+.|++||-+
T Consensus 5 tFTsdySk~l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 5 TFISDYSIAMDKIHQQDFVNWLLA 28 (30)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc
Confidence 466667777788888999999976
No 6
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=66.82 E-value=3.8 Score=24.40 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q psy16911 165 FVDKLSNLSTGYEHASYINLLSEI 188 (194)
Q Consensus 165 la~fl~~y~~~kEq~EYi~wL~~v 188 (194)
|.+-+..|...+--++||.||.+=
T Consensus 6 FTsdyS~~l~~~aak~fv~wL~~~ 29 (39)
T 1jrj_A 6 FTSDLSKQMEEEAVRLFIEWLKNG 29 (39)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC
Confidence 455566677777778999999863
No 7
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=62.87 E-value=5.8 Score=22.42 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=15.1
Q ss_pred HHhhhhHHHHHHHHHHHHHh
Q psy16911 170 SNLSTGYEHASYINLLSEIQ 189 (194)
Q Consensus 170 ~~y~~~kEq~EYi~wL~~vk 189 (194)
+.|...+--++||.||.+-+
T Consensus 3 SkyLe~~aakdFv~WL~ngk 22 (31)
T 3c5t_B 3 SKQMEEEAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 45666677789999998754
No 8
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=62.76 E-value=6.1 Score=21.95 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=14.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy16911 165 FVDKLSNLSTGYEHASYINLLSE 187 (194)
Q Consensus 165 la~fl~~y~~~kEq~EYi~wL~~ 187 (194)
|.+-...|....--+.|++||.+
T Consensus 6 FTsdysk~l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 6 FTSDYSKYLDSRRAQDFVQWLMN 28 (29)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555666889999964
No 9
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=61.35 E-value=4.7 Score=23.09 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy16911 165 FVDKLSNLSTGYEHASYINLLSE 187 (194)
Q Consensus 165 la~fl~~y~~~kEq~EYi~wL~~ 187 (194)
|.+-+..|...+--++|+.||.+
T Consensus 6 FTsd~s~~l~~~aak~fl~wL~~ 28 (33)
T 2l63_A 6 FSDEMNTILDNLAARDFINWLIQ 28 (33)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHc
Confidence 44444555566667899999976
No 10
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=57.32 E-value=15 Score=28.52 Aligned_cols=46 Identities=9% Similarity=0.139 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---------------hhhHHHHHHHHHHHHH
Q psy16911 143 VLDGPLYDLLMNYLEEKGISNEFVDKLSNL---------------STGYEHASYINLLSEI 188 (194)
Q Consensus 143 ~LDe~Lq~~~~~yLeeRGId~ela~fl~~y---------------~~~kEq~EYi~wL~~v 188 (194)
...-.|-.-+.++|.+.||+.++++||..= -.+++-..|..||+++
T Consensus 103 v~~~~iRk~~~t~m~~~gvp~~vi~fiqGR~~~~vl~~hYl~l~~~a~~~Y~k~~~~l~~~ 163 (163)
T 3vcf_A 103 IAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV 163 (163)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHTTCCCSSSSCSCCSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678888899999999999999999642 2456667788888763
No 11
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=55.51 E-value=7.8 Score=21.75 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy16911 165 FVDKLSNLSTGYEHASYINLLSE 187 (194)
Q Consensus 165 la~fl~~y~~~kEq~EYi~wL~~ 187 (194)
|..-+..|...+--++|+.||.+
T Consensus 6 ftsD~s~~L~~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 6 FTSDVSSYLEGQAAKEFIAWLVK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHc
Confidence 34445566677778999999964
No 12
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=48.18 E-value=19 Score=25.20 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHcCCCHH---HHHHHHHhhhhHHHHHHHHHHHHH
Q psy16911 153 MNYLEEKGISNE---FVDKLSNLSTGYEHASYINLLSEI 188 (194)
Q Consensus 153 ~~yLeeRGId~e---la~fl~~y~~~kEq~EYi~wL~~v 188 (194)
-.=|+++||+.. |+.|| +..|....+..||++.
T Consensus 31 ~~~L~~~Gf~kAy~lLGqFL---~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 31 GKKLEERGFDKAYVVLGQFL---VLKKDEDLFREWLKDT 66 (89)
T ss_dssp HHHHHHTTCCSHHHHHHHHH---HTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHH---HcCCCHHHHHHHHHHH
Confidence 344566888875 34443 4566677888888765
No 13
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=38.93 E-value=51 Score=19.54 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Q psy16911 143 VLDGPLYDLLMNYLEEKGISNEFVDKLSNLS 173 (194)
Q Consensus 143 ~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~ 173 (194)
.||++|...|..|-+..|+ ....+|....
T Consensus 15 rl~~el~~~l~~~a~~~g~--s~s~~ir~ai 43 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNL--TLSDVCRLAI 43 (55)
T ss_dssp EECHHHHHHHHHHHHHHTC--CHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence 4899999999999999999 4556665544
No 14
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=38.87 E-value=48 Score=18.09 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=12.4
Q ss_pred HHHHhhhhHHH---HHHHHHHHH
Q psy16911 168 KLSNLSTGYEH---ASYINLLSE 187 (194)
Q Consensus 168 fl~~y~~~kEq---~EYi~wL~~ 187 (194)
|-.+|+...+| +.|+.||-+
T Consensus 6 FTsdysk~l~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 6 FTDNYTRLRKQMAVKKYLNSILN 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555554 678888864
No 15
>2ouf_A Hypothetical protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Helicobacter pylori} SCOP: a.292.1.1 PDB: 2bo3_A 3mli_A
Probab=34.92 E-value=89 Score=21.90 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhh---------hHHHHHHHHHHHHH
Q psy16911 148 LYDLLMNYLEEKGISNEFVDKLSNLST---------GYEHASYINLLSEI 188 (194)
Q Consensus 148 Lq~~~~~yLeeRGId~ela~fl~~y~~---------~kEq~EYi~wL~~v 188 (194)
.+.++...|+++|++..|-..|..|.. .+-+..||....++
T Consensus 40 rlaamE~llEe~G~~e~~e~~ik~~~~~~~~~d~i~~~~~dL~Ie~mg~I 89 (94)
T 2ouf_A 40 LLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANI 89 (94)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHhhhhHHHHHHHccchHHHHHHHH
Confidence 456778899999999555555555444 44566677666554
No 16
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=33.37 E-value=4.9 Score=24.29 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=15.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHh
Q psy16911 168 KLSNLSTGYEHASYINLLSEIQ 189 (194)
Q Consensus 168 fl~~y~~~kEq~EYi~wL~~vk 189 (194)
-++.|.+.+-.++||+||-+-+
T Consensus 9 DySk~Ld~~~akdFv~WL~~~k 30 (42)
T 2b4n_A 9 DYSIAMDKIHQQDFVNWLLAQK 30 (42)
T ss_dssp CCCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3445667777889999997643
No 17
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=27.72 E-value=37 Score=28.95 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=27.2
Q ss_pred cCCCCCcccccCC-CCCCCHHHHHHHHHHHHHcCCC
Q psy16911 128 ERENGKTTTIACL-EEVLDGPLYDLLMNYLEEKGIS 162 (194)
Q Consensus 128 e~~~~~~~~Y~g~-~~~LDe~Lq~~~~~yLeeRGId 162 (194)
+|.| .++.+... + .++..|++-|++-|++|||.
T Consensus 328 ~G~~-~~Gv~~pE~~-~~~~~~~~~~l~~L~~~Gi~ 361 (365)
T 2z2v_A 328 ENTC-TFGVIPPEIL-GMREDTFRRIIDELKERGIS 361 (365)
T ss_dssp TTCS-CSEEECGGGG-TSSHHHHHHHHHHHHHTTCC
T ss_pred CCCc-ccceecHHHc-CCchhHHHHHHHHHHHCCCc
Confidence 8889 66677653 4 37899999999999999995
No 18
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=32.87 E-value=13 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCCHHHH
Q psy16911 146 GPLYDLLMNYLEEKGISNEFV 166 (194)
Q Consensus 146 e~Lq~~~~~yLeeRGId~ela 166 (194)
..+-.+|.+||+.+||...+-
T Consensus 10 ~~~Aq~f~dyL~s~gI~~~v~ 30 (69)
T 2lep_A 10 PRVAQAFVDYMATQGVILTIQ 30 (69)
Confidence 345668999999999998873
No 19
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.00 E-value=96 Score=21.29 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.4
Q ss_pred EEEEEe--CCceEEEEEEecCCCCCCCCCCCCCceEEeeeeeecCC
Q psy16911 87 EVNFIK--GNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTYERE 130 (194)
Q Consensus 87 ~V~I~K--~~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~e~~ 130 (194)
.|.|.+ +++.|.--|+.. .++.|.|.+|.+.+|+
T Consensus 8 dVri~~~~~~g~lka~asVt----------~dd~fvI~~ikVieg~ 43 (87)
T 2i9x_A 8 DVRLRKIQTDGRMKALVSIT----------LDEAFVIHDLRVIEGN 43 (87)
T ss_dssp EEEEEECCSSSSEEEEEEEE----------ETTTEEEEEEEEEEET
T ss_pred EEEEEEcCCCCCEEEEEEEE----------ECCEEEEeeEEEEECC
Confidence 456666 457777777773 3456999999998775
No 20
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.52 E-value=96 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred EEEEEe--CCceEEEEEEecCCCCCCCCCCCCCceEEeeeeeecCC
Q psy16911 87 EVNFIK--GNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTYERE 130 (194)
Q Consensus 87 ~V~I~K--~~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~e~~ 130 (194)
.|.|.+ +++.|.--|+.. .++.|.|.+|.+.+|+
T Consensus 8 dVri~~i~~~gklkA~aSVt----------~dd~FvI~dIKViEg~ 43 (105)
T 2i9z_A 8 DVRLRKIQTDGRMKALVSIT----------LDEAFVIHDLRVIEGN 43 (105)
T ss_dssp EEEEEECCSCSSEEEEEEEE----------ETTTEEEEEEEEEEET
T ss_pred EEEEEEeCCCCCEEEEEEEE----------ECCEEEEeeEEEEECC
Confidence 366766 457777777773 3456999999998775
No 21
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=25.23 E-value=96 Score=22.67 Aligned_cols=27 Identities=30% Similarity=0.161 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHH
Q psy16911 139 CLEEVLDGPLYDLLMNYLEEKGISNEF 165 (194)
Q Consensus 139 g~~~~LDe~Lq~~~~~yLeeRGId~el 165 (194)
|....|.+++.+.|.++...+||..+-
T Consensus 119 gR~~~~s~e~~e~F~~~~~~~Gl~~en 145 (157)
T 3fiq_A 119 GKREDLNKAQKQELRKLAEEYNIPNEN 145 (157)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 344579999999999999999999864
No 22
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=24.90 E-value=99 Score=21.81 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=24.6
Q ss_pred EEEEEe--CCceEEEEEEecCCCCCCCCCCCCCceEEeeeeeecCC
Q psy16911 87 EVNFIK--GNKTLGFTCSFIPPESEPSEDGYNDLFSIDEVDTYERE 130 (194)
Q Consensus 87 ~V~I~K--~~~~L~f~c~~~~~e~~~~e~~~~d~f~I~~v~~~e~~ 130 (194)
.|.|.+ +++.|.--||.. .+|.|.|.+|.+.+|+
T Consensus 8 dVri~~i~~~gklkA~aSVt----------~dd~fvI~dIkVieg~ 43 (100)
T 2ia9_A 8 DVRLRRVNTDGRMRAIASIT----------LDHEFVVHDIRVIDGN 43 (100)
T ss_dssp EEEEEECCSSSSEEEEEEEE----------ETTTEEEEEEEEEEET
T ss_pred EEEEEEcCCCCCEEEEEEEE----------ECCEEEEeeEEEEECC
Confidence 466766 457777777773 3456999999998775
No 23
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=23.08 E-value=1e+02 Score=21.92 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Q psy16911 146 GPLYDLLMNYLEEKGISNEFVDKLS 170 (194)
Q Consensus 146 e~Lq~~~~~yLeeRGId~ela~fl~ 170 (194)
..|+.++..+|..++ .++|...|.
T Consensus 60 ~~l~~~l~~wl~~~~-~~~l~~~l~ 83 (114)
T 2zop_A 60 KALGNDLAQVLGYRD-LRELAEAAR 83 (114)
T ss_dssp HHHHHHHHHHTTCSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-HHHHHHHHH
Confidence 358889999999884 455555543
No 24
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized protein; knot, designed protein, fusion protein, chimera protein; 2.29A {Helicobacter pylori}
Probab=23.05 E-value=1.5e+02 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHh---------hhhHHHHHHHHHHHHH
Q psy16911 148 LYDLLMNYLEEKGISNEFVDKLSNL---------STGYEHASYINLLSEI 188 (194)
Q Consensus 148 Lq~~~~~yLeeRGId~ela~fl~~y---------~~~kEq~EYi~wL~~v 188 (194)
-+.++...|+++|+++.+-..+..+ ...+-+..||....++
T Consensus 40 rlAamE~llEe~g~eE~~~~~~~~~~~d~e~~d~I~~~~~dL~Ie~mg~I 89 (189)
T 3mlg_A 40 LLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANI 89 (189)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhhHhhHHHHHHHccchHHHHHHHH
Confidence 3556678899999998876666665 5567788888877664
No 25
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.65 E-value=43 Score=25.72 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhhhhHHHH
Q psy16911 150 DLLMNYLEEKGISNEFVDKLSNLSTGYEHA 179 (194)
Q Consensus 150 ~~~~~yLeeRGId~ela~fl~~y~~~kEq~ 179 (194)
..+..||..+||-..+|.|=..|+...|..
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~ 109 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHc
Confidence 347899999999999999999998877654
No 26
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=21.92 E-value=56 Score=17.33 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=11.0
Q ss_pred HHHHHH-HHHhhhhcC
Q psy16911 180 SYINLL-SEIQKFTSQ 194 (194)
Q Consensus 180 EYi~wL-~~vk~Fv~~ 194 (194)
++++|+ +.|++|.+|
T Consensus 11 dfvKlI~~TV~KFtkk 26 (26)
T 1dtc_A 11 DLVKWIIDTVNKFTKK 26 (26)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 567785 569999875
No 27
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=21.67 E-value=93 Score=20.07 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q psy16911 144 LDGPLYDLLMNYLEEKGIS 162 (194)
Q Consensus 144 LDe~Lq~~~~~yLeeRGId 162 (194)
||.+--+.++.+|++.||+
T Consensus 40 ld~e~id~i~~~L~~~gI~ 58 (72)
T 2k6x_A 40 FDTNLIERIHEELEKHGIN 58 (72)
T ss_dssp CCHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 8999999999999999995
No 28
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized protein; knot, designed protein, fusion protein, chimera protein; 2.29A {Helicobacter pylori}
Probab=21.66 E-value=1.5e+02 Score=23.33 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHH---------hhhhHHHHHHHHHHHHHh
Q psy16911 148 LYDLLMNYLEEKGISNEFVDKLSN---------LSTGYEHASYINLLSEIQ 189 (194)
Q Consensus 148 Lq~~~~~yLeeRGId~ela~fl~~---------y~~~kEq~EYi~wL~~vk 189 (194)
.+.++...||++|++..+-.++.. -...+-+.-||....++=
T Consensus 129 r~Aame~lLE~~gl~E~~~~~~~~~~~~~e~~~~I~~~k~dL~IesmanI~ 179 (189)
T 3mlg_A 129 LLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANIL 179 (189)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 355566779999999999877655 455566778888777753
No 29
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.83 E-value=79 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCHH
Q psy16911 140 LEEVLDGPLYDLLMNYLEEKGISNE 164 (194)
Q Consensus 140 ~~~~LDe~Lq~~~~~yLeeRGId~e 164 (194)
....|++++.+.|.+++..+||+.+
T Consensus 114 R~~~l~~e~~~~f~~~~~~~G~~~~ 138 (151)
T 1e5p_A 114 KGNALTPEENEILVQFAHEKKIPVE 138 (151)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 3457999999999999999999976
No 30
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=20.03 E-value=55 Score=18.58 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCH
Q psy16911 143 VLDGPLYDLLMNYLEEKGISN 163 (194)
Q Consensus 143 ~LDe~Lq~~~~~yLeeRGId~ 163 (194)
.||++|...|..+-+.+|++-
T Consensus 8 ~l~~~l~~~Ld~~a~~~g~sr 28 (45)
T 2cpg_A 8 TLSESVLENLEKMAREMGLSK 28 (45)
T ss_dssp EEEHHHHHHHHHHHHHHTCCH
T ss_pred ecCHHHHHHHHHHHHHHCcCH
Confidence 489999999999999999963
Done!