RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16911
(194 letters)
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP:
d.25.1.1 PDB: 3rpx_A
Length = 209
Score = 143 bits (362), Expect = 1e-43
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 9/202 (4%)
Query: 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLDGPEVSLEKTVGSEKIEIHFNVNHS 60
+K +FLS+EI+ E+KIQK K++P G++++L+G E L + V EKI + FN+N+S
Sbjct: 6 DKAFVDFLSDEIKEERKIQKHKTLPKMSGGWELELNGTEAKLVRKVAGEKITVTFNINNS 65
Query: 61 V----DADAEPQIDPNMDEPEIEMKSKPSFEVNFIK---GNKTLGFTCSFIPPESEPSED 113
+ D + EP ++E E E+ S P+F V IK G K L C + E ++
Sbjct: 66 IPPTFDGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDE 125
Query: 114 GYNDLFSIDEVDTYERENG--KTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLSN 171
+D+FSI EV K T + LD LYD LM++L ++G+ N F D+L
Sbjct: 126 AESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMDFLADRGVDNTFADELVE 185
Query: 172 LSTGYEHASYINLLSEIQKFTS 193
LST EH YI L +++ F
Sbjct: 186 LSTALEHQEYITFLEDLKSFVK 207
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium, SGPP; 2.30A {Leishmania major}
SCOP: d.25.1.1
Length = 203
Score = 103 bits (259), Expect = 3e-28
Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 19/196 (9%)
Query: 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLD--GPEVSLEKTVGSEKIEIHFNVN 58
+ L + E++ E P+ G+QV L K+ E + + ++ N
Sbjct: 24 DAALADATRRELEEEMGRSDKPEQPTPPAGWQVVRKPGTCTFDLTKSFEGEDLVVRYSTN 83
Query: 59 HSVDADAEPQIDPNMDEPEIEMKSKPSFEVNFIKGNKTLGFTCSFIPPE-SEPSEDGYND 117
D I + + +T+ S E + Y++
Sbjct: 84 QDSDKANSHNIFVYITQK----------------NGQTMQADLSIEEGELVLNNIRFYDE 127
Query: 118 LFSIDEVDTYERENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYE 177
+ L LD L + +M YLE++G+ + + + S E
Sbjct: 128 AALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAE 187
Query: 178 HASYINLLSEIQKFTS 193
Y L+ + KF S
Sbjct: 188 QQDYEAWLTTMNKFAS 203
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Length = 182
Score = 99.6 bits (248), Expect = 8e-27
Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 20/196 (10%)
Query: 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLD--GPEVSLEKTVGSEKIEIHFNVN 58
++ L E E++ E++ P +G+ + ++ K+ G E+I +
Sbjct: 4 DQRLSEATLRELEDERQRAGLPEKPEIPEGWTIDRKPGVTHFTMRKSHGDEEIILQLTGE 63
Query: 59 HSVDADAEPQIDPNMDEPEIEMKSKPSFEVNFIKGNKTLGFTCSFIPPESEPSEDGYNDL 118
+ + + +V + G K L F S E + +
Sbjct: 64 DRSNEE-----------------ITRTLDVLVVNGGKALVFGMSVEDGEFVINNVCFRHD 106
Query: 119 FSIDEVDTYERENGKTTTIACLE-EVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYE 177
+ + E + K+ + L+ L D +YL +G+++ + + S E
Sbjct: 107 GKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSE 166
Query: 178 HASYINLLSEIQKFTS 193
A Y LS I KF S
Sbjct: 167 QADYEEWLSSINKFVS 182
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure,
mitochondrial oxidative phosphorylati protein binding;
2.10A {Saccharomyces cerevisiae}
Length = 227
Score = 86.6 bits (214), Expect = 2e-21
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 24/215 (11%)
Query: 1 EKELFEFLSEEIQAEKKIQKSKSIPSEIDGFQVKLD--------GPEVSLEK-TVGSEKI 51
+ + + L E++ EK+ + + F K E + + T E +
Sbjct: 11 TQRVGDILQSELKIEKETLPESTSLDSFNDFLNKYKFSLVETPGKNEAEIVRRTESGETV 70
Query: 52 EIHFNVNHSVDADAEPQIDPNMDE-----PEIEMKSKPSFEVNF-------IKGNKTLGF 99
+ F+V + +D N ++ E + + N + F
Sbjct: 71 HVFFDVAQIANLPYNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSF 130
Query: 100 TCSFIPPESEPSEDG--YNDLFSIDEVDTYERENGKTTTIACLE-EVLDGPLYDLLMNYL 156
E D + E E + LD L + L YL
Sbjct: 131 ELLMNLQEGSFYVDSATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQESLEAYL 190
Query: 157 EEKGISNEFVDKLSNLSTGYEHASYINLLSEIQKF 191
E +G++ E +S S E+ YI+ L +++KF
Sbjct: 191 ESRGVNEELASFISAYSEFKENNEYISWLEKMKKF 225
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 9e-06
Identities = 32/202 (15%), Positives = 72/202 (35%), Gaps = 49/202 (24%)
Query: 18 IQKSKSIPSEI--------DGFQVKLDGPEVSLEKTVGSE---KIE-----IHFNVNHSV 61
++ +P+ + F L PE + E E + + V+ V
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKIL--PEPTEGFAADDEPTTPAELVGKFLGY-VSSLV 72
Query: 62 DADAEPQIDPNMDEPEIEMKSKPSFEVNFIKGNKTLGFTCSFIPPESEPSEDGYNDLFSI 121
+ Q D ++ FE +++GN E++ + +L
Sbjct: 73 EPSKVGQFD------QVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTTLVKTKEL--- 122
Query: 122 DEVDTY-------ERENGKTTTIACLEEVLDG--PLYDLLMNYLEEKGISNEFVDKLSNL 172
+ Y +R K + A V +G L + +G ++++ ++L +L
Sbjct: 123 --IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFG---GQGNTDDYFEELRDL 176
Query: 173 STGYEHASYINLLSEIQKFTSQ 194
Y+ +Y L+ ++ KF+++
Sbjct: 177 ---YQ--TYHVLVGDLIKFSAE 193
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.18
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 15/40 (37%)
Query: 11 EIQAEKKIQKSKSIPSEIDGFQVKL---D-GPEVSLEKTV 46
E QA KK+Q S +KL D P ++++ T+
Sbjct: 18 EKQALKKLQAS-----------LKLYADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.43
Identities = 41/285 (14%), Positives = 73/285 (25%), Gaps = 111/285 (38%)
Query: 5 FEFLSEEIQAEKKIQKSK------------------------SIPSEIDGFQVKL----D 36
++FL I+ E++ Q S S + L
Sbjct: 91 YKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 37 GPEVSLE------KTV------GSEKIEIHFNVN---------HSVDADAEP------QI 69
V ++ KT S K++ + +S + E QI
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 70 DPNMDEPEIEMKSKPSFEVNFIKGNKTLGFTCSFIPPESEPSEDGYNDLFSIDEV----- 124
DPN + S ++ I+ S+ N L + V
Sbjct: 210 DPNWTS-RSDHSSNIKLRIHSIQAELRRLLK----------SKPYENCLLVLLNVQNAKA 258
Query: 125 ----D--------TYERE-----NGKTTTIACLEEVLDGPLY-----DLLMNYL------ 156
+ T ++ + TTT L+ L LL+ YL
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQD 317
Query: 157 ---EEKGIS-------NEFVDKLSNLSTGYEHASYINLLSEIQKF 191
E + E + ++H + L + I+
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 28.1 bits (63), Expect = 0.82
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 53 IHFNVNHSVDADAEPQIDPNMDEPEIEMKSKPSFEVNFIKGNKTLGFT 100
+H + +HS D + P+ + +G LGF+
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMPQC-------KSITLERGPDGLGFS 41
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 28.0 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 132 GKTTTIACLEEVLDGPLYD---LLMNYLEEKGIS 162
GKT T L L G + + MN +E+GI
Sbjct: 50 GKTATAIALARDLFGENWRDNFIEMNASDERGID 83
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 26.5 bits (59), Expect = 2.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 85 SFEVNFIKGNKTLGFT 100
S K ++ GFT
Sbjct: 1 SIHTKLRKSSRGFGFT 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 27.7 bits (62), Expect = 2.7
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 132 GKTTTIACLEEVLDGPLYD---LLMNYLEEKGISN 163
GKT T L L G + + MN +E+GI
Sbjct: 50 GKTATAIALARDLFGENWRDNFIEMNASDERGIDV 84
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 26.6 bits (59), Expect = 5.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 132 GKTTTIACLEEVLDGPLYD---LLMNYLEEKGIS 162
GKTT L L G + L +N +E+GI+
Sbjct: 58 GKTTAALALARELFGENWRHNFLELNASDERGIN 91
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 26.6 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 141 EEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
E L G YD + +YLE K + + + N EH
Sbjct: 224 EVAL-GVTYDNIDDYLEGKNVPQQVARTIENWYLKTEH 260
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 26.7 bits (60), Expect = 6.0
Identities = 7/33 (21%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1 EKELFEFLSEEIQAE-KKIQKSKSIPSEIDGFQ 32
E+E+F + E + + + ++++ I +E+D +
Sbjct: 499 EEEVFLEVRERAKRQAEALREAARILAELDVYA 531
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 25.4 bits (56), Expect = 6.1
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 74 DEPEIEMKSKPSFEVNFIKGNKTLGFT 100
E+ + S V +K K LGF+
Sbjct: 5 SSGELALWSPEVKIVELVKDCKGLGFS 31
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 26.7 bits (60), Expect = 6.4
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 1 EKELFEFLSEEIQAE-KKIQKSKSIPSEIDGFQ 32
EK+L+E L + + + +Q+S S +E+D
Sbjct: 524 EKQLYEELFDLLLPHLEALQQSASALAELDVLV 556
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 25.4 bits (56), Expect = 7.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 72 NMDEPEIEMKSKPSFEVNFIKGNKTLGFT 100
++ + +S E+ KG K LGF+
Sbjct: 12 DLGTENLYFQSMTVVEIKLFKGPKGLGFS 40
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 26.4 bits (59), Expect = 7.0
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 149 YDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
Y + ++L+ K +S + +++++ H
Sbjct: 210 YQEIDDFLDGKQVSAKALERINFWHNRSHH 239
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei}
Length = 285
Score = 26.2 bits (58), Expect = 7.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 141 EEVLDGPLYDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
E G Y+ + ++LE K + + + + H
Sbjct: 233 EHAY-GITYEQIDDFLEGKPMDDAVAETVLRFYDATRH 269
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR
domain, endocytosis/exocytosis complex; 2.31A {Bos
taurus} SCOP: b.1.10.3 d.105.1.2
Length = 322
Score = 26.1 bits (57), Expect = 7.5
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 96 TLGFT-CSFIPPESEPSEDGYNDLFSIDEVD 125
+ FT P E ++GY D + +++++
Sbjct: 175 VMKFTVKDCDPTTGEADDEGYEDEYVLEDLE 205
>2ebf_X Dermonecrotic toxin; pasteurella multocida toxin, trojan horse-like
fold; HET: TRE; 1.90A {Pasteurella multocida} SCOP:
a.296.1.1 c.150.1.2 d.3.1.17 PDB: 2ec5_A 2ebh_X*
Length = 746
Score = 26.4 bits (57), Expect = 7.5
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 111 SEDGYNDLFSIDEVDTYERENGKTTTIACLEEVLDGPLYDLLMNYLEEKGISNEFVDKLS 170
+ F ++ + T+ I+ L + +L+ L
Sbjct: 376 QNSSKSIDFFLNNLTTFIDNGLTEIAISDLPYDIVQQEIS---QFLQGSNEWKTLDAMLF 432
Query: 171 NLSTGYEHASYINLLSEIQK 190
NL G + ++ LL +
Sbjct: 433 NLDKGDINGAFRKLLQSAKD 452
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 26.4 bits (59), Expect = 7.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 131 NGKTTTIACLEEVL 144
NGK TT LE +L
Sbjct: 61 NGKGTTCCTLEAIL 74
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 26.3 bits (59), Expect = 8.1
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 131 NGKTTTIACLEEVL 144
NGK TT LE +L
Sbjct: 58 NGKGTTCRTLESIL 71
>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 25.6 bits (57), Expect = 9.9
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 149 YDLLMNYLEEKGISNEFVDKLSNLSTGYEH 178
YD + +YLE K +S + + L + EH
Sbjct: 228 YDEIDDYLEGKEVSAKVSEALEKRYSMTEH 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.132 0.362
Gapped
Lambda K H
0.267 0.0542 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,915,462
Number of extensions: 171062
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 35
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.4 bits)